Mercurial > repos > david-hoover > garbage1

changeset 9:07d3765a50ad draft

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Uploaded
author david-hoover
date Wed, 12 Sep 2012 12:13:25 -0400
parents f60178b1a3dd
children b138c5569231
files unified_genotyper.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/unified_genotyper.xml	Wed Sep 12 11:58:11 2012 -0400
+++ b/unified_genotyper.xml	Wed Sep 12 12:13:25 2012 -0400
@@ -466,7 +466,7 @@
         <param name="doContextDependentGapPenalties" type="boolean" truevalue="--doContextDependentGapPenalties" falsevalue="" label="Vary gap penalties by context" help="--doContextDependentGapPenalties" />
         <param name="annotation" type="select" multiple="True" display="checkboxes" label="Annotation Types" help="-A,--annotation &amp;lt;annotation&amp;gt;">
           <!-- load the available annotations from an external configuration file, since additional ones can be added to local installs -->
-          <options from_data_table="gatk_annotations">
+          <options from_data_table="gatk2_annotations">
             <filter type="multiple_splitter" column="tools_valid_for" separator=","/>
             <filter type="static_value" value="UnifiedGenotyper" column="tools_valid_for"/>
           </options>
@@ -499,7 +499,7 @@
     <!--     <param name="family_string" type="text" value="" label="Family String"/> -->
         <param name="exclude_annotations" type="select" multiple="True" display="checkboxes" label="Annotations to exclude" help="-XA,--excludeAnnotation &amp;lt;excludeAnnotation&amp;gt;" >
           <!-- load the available annotations from an external configuration file, since additional ones can be added to local installs -->
-          <options from_data_table="gatk_annotations">
+          <options from_data_table="gatk2_annotations">
             <filter type="multiple_splitter" column="tools_valid_for" separator=","/>
             <filter type="static_value" value="UnifiedGenotyper" column="tools_valid_for"/>
           </options>