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view README @ 10:b138c5569231 draft

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author david-hoover
date Wed, 12 Sep 2012 12:38:51 -0400
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The gatk2_sorted_picard_index.loc and gatk2_annotations.txt files must be
copied into the tool-data directory.  The file tool_data_table_conf.xml must
be edited to include references to these two new files.  

Additionally, copies of or links to the GenomeAnalysisTK.jar and key file
must be made within the directory tool-data/shared/jars/gatk2.

  ${GALAXY_DATA_INDEX_DIR}/shared/jars/gatk2/GenomeAnalysisTK.jar
  ${GALAXY_DATA_INDEX_DIR}/shared/jars/gatk2/gatk2_key_file