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diff README @ 10:b138c5569231 draft

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author david-hoover
date Wed, 12 Sep 2012 12:38:51 -0400
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children 432aafa6830a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Wed Sep 12 12:38:51 2012 -0400
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+The gatk2_sorted_picard_index.loc and gatk2_annotations.txt files must be
+copied into the tool-data directory.  The file tool_data_table_conf.xml must
+be edited to include references to these two new files.  
+
+Additionally, copies of or links to the GenomeAnalysisTK.jar and key file
+must be made within the directory tool-data/shared/jars/gatk2.
+
+  ${GALAXY_DATA_INDEX_DIR}/shared/jars/gatk2/GenomeAnalysisTK.jar
+  ${GALAXY_DATA_INDEX_DIR}/shared/jars/gatk2/gatk2_key_file