Mercurial > repos > david-hoover > annovar
changeset 0:6b2775a4709b draft
Uploaded
| author | david-hoover |
|---|---|
| date | Thu, 04 Oct 2012 17:44:54 -0400 |
| parents | |
| children | c1696d58c43f |
| files | convertvcf4toannovar/convertvcf4toannovar.py convertvcf4toannovar/convertvcf4toannovar.xml convertvcf4toannovar/test-data/convertvcf4toannovar_test1_input.xls convertvcf4toannovar/test-data/convertvcf4toannovar_test1_output.xls |
| diffstat | 4 files changed, 20581 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/convertvcf4toannovar/convertvcf4toannovar.py Thu Oct 04 17:44:54 2012 -0400 @@ -0,0 +1,543 @@ +# convertvcf4toannovar.py - a self annotated version of rgToolFactory.py generated by running rgToolFactory.py +# to make a new Galaxy tool called convertvcf4toannovar +# User hooverdm@helix.nih.gov at 04/10/2012 17:41:19 +# rgToolFactory.py +# see https://bitbucket.org/fubar/galaxytoolfactory/wiki/Home +# +# copyright ross lazarus (ross stop lazarus at gmail stop com) May 2012 +# +# all rights reserved +# Licensed under the LGPL +# suggestions for improvement and bug fixes welcome at https://bitbucket.org/fubar/galaxytoolfactory/wiki/Home + +# August 11 2012 +# changed to use shell=False and cl as a sequence + +# This is a Galaxy tool factory for simple scripts in python, R or whatever ails ye. +# It also serves as the wrapper for the new tool. +# +# you paste and run your script +# Only works for simple scripts that read one input from the history. +# Optionally can write one new history dataset, +# and optionally collect any number of outputs into links on an autogenerated HTML page. + +# DO NOT install on a public or important site - please. + +# installed generated tools are fine if the script is safe. +# They just run normally and their user cannot do anything unusually insecure +# but please, practice safe toolshed. +# Read the fucking code before you install any tool +# especially this one + +# After you get the script working on some test data, you can +# optionally generate a toolshed compatible gzip file +# containing your script safely wrapped as an ordinary Galaxy script in your local toolshed for +# safe and largely automated installation in a production Galaxy. + +# If you opt for an HTML output, you get all the script outputs arranged +# as a single Html history item - all output files are linked, thumbnails for all the pdfs. +# Ugly but really inexpensive. +# +# Patches appreciated please. +# +# +# long route to June 2012 product +# Behold the awesome power of Galaxy and the toolshed with the tool factory binds to bind them +# derived from an integrated script model +# called rgBaseScriptWrapper.py +# Note to the unwary: +# This tool allows arbitrary scripting on your Galaxy as the Galaxy user +# There is nothing stopping a malicious user doing whatever they choose +# Extremely dangerous!! +# Totally insecure. So, trusted users only +# +# preferred model is a developer using their throw away workstation instance - ie a private site. +# no real risk. The universe_wsgi.ini admin_users string is checked - only admin users are permitted to run this tool. +# + +import sys +import shutil +import subprocess +import os +import time +import tempfile +import optparse +import tarfile +import re +import shutil +import math + +progname = os.path.split(sys.argv[0])[1] +myversion = 'V000.2 June 2012' +verbose = False +debug = False +toolFactoryURL = 'https://bitbucket.org/fubar/galaxytoolfactory' + +def timenow(): + """return current time as a string + """ + return time.strftime('%d/%m/%Y %H:%M:%S', time.localtime(time.time())) + + +class ScriptRunner: + """class is a wrapper for an arbitrary script + """ + + def __init__(self,opts=None,treatbashSpecial=True): + """ + cleanup inputs, setup some outputs + + """ + self.treatbashSpecial = treatbashSpecial + if opts.output_dir: # simplify for the tool tarball + os.chdir(opts.output_dir) + self.thumbformat = 'jpg' + self.opts = opts + self.toolname = re.sub('[^a-zA-Z0-9_]+', '', opts.tool_name) # a sanitizer now does this but.. + self.toolid = self.toolname + self.myname = sys.argv[0] # get our name because we write ourselves out as a tool later + self.pyfile = self.myname # crude but efficient - the cruft won't hurt much + self.xmlfile = '%s.xml' % self.toolname + s = open(self.opts.script_path,'r').readlines() + s = [x.rstrip() for x in s] # remove pesky dos line endings if needed + self.script = '\n'.join(s) + fhandle,self.sfile = tempfile.mkstemp(prefix=self.toolname,suffix=".%s" % (opts.interpreter)) + tscript = open(self.sfile,'w') # use self.sfile as script source for Popen + tscript.write(self.script) + tscript.close() + self.indentedScript = ''.join([' %s' % x for x in s]) # for restructured text in help + if opts.output_dir: # may not want these complexities + self.tlog = os.path.join(opts.output_dir,"%s_runner.log" % self.toolname) + art = '%s.%s' % (self.toolname,opts.interpreter) + artpath = os.path.join(self.opts.output_dir,art) # need full path + artifact = open(artpath,'w') # use self.sfile as script source for Popen + artifact.write(self.script) + artifact.close() + self.cl = [] + self.html = [] + a = self.cl.append + a(opts.interpreter) + if self.treatbashSpecial and opts.interpreter in ['bash','sh']: + a(self.sfile) + else: + a('-') # stdin + a(opts.input_tab) + a(opts.output_tab) + self.outFormats = 'tabular' # TODO make this an option at tool generation time + self.inputFormats = 'tabular' # TODO make this an option at tool generation time + self.test1Input = '%s_test1_input.xls' % self.toolname + self.test1Output = '%s_test1_output.xls' % self.toolname + self.test1HTML = '%s_test1_output.html' % self.toolname + + def makeXML(self): + """ + Create a Galaxy xml tool wrapper for the new script as a string to write out + fixme - use templating or something less fugly than this example of what we produce + + <tool id="reverse" name="reverse" version="0.01"> + <description>a tabular file</description> + <command interpreter="python"> + reverse.py --script_path "$runMe" --interpreter "python" + --tool_name "reverse" --input_tab "$input1" --output_tab "$tab_file" + </command> + <inputs> + <param name="input1" type="data" format="tabular" label="Select a suitable input file from your history"/><param name="job_name" type="text" label="Supply a name for the outputs to remind you what they contain" value="reverse"/> + + </inputs> + <outputs> + <data format="tabular" name="tab_file" label="${job_name}"/> + + </outputs> + <help> + +**What it Does** + +Reverse the columns in a tabular file + + </help> + <configfiles> + <configfile name="runMe"> + +# reverse order of columns in a tabular file +import sys +inp = sys.argv[1] +outp = sys.argv[2] +i = open(inp,'r') +o = open(outp,'w') +for row in i: + rs = row.rstrip().split('\t') + rs.reverse() + o.write('\t'.join(rs)) + o.write('\n') +i.close() +o.close() + + + </configfile> + </configfiles> + </tool> + + """ + newXML="""<tool id="%(toolid)s" name="%(toolname)s" version="%(tool_version)s"> + %(tooldesc)s + %(command)s + <inputs> + %(inputs)s + </inputs> + <outputs> + %(outputs)s + </outputs> + <configfiles> + <configfile name="runMe"> + %(script)s + </configfile> + </configfiles> + %(tooltests)s + <help> + %(help)s + </help> + </tool>""" # needs a dict with toolname, toolid, interpreter, scriptname, command, inputs as a multi line string ready to write, outputs ditto, help ditto + + newCommand="""<command interpreter="python"> + %(toolname)s.py --script_path "$runMe" --interpreter "%(interpreter)s" + --tool_name "%(toolname)s" %(command_inputs)s %(command_outputs)s + </command>""" # may NOT be an input or htmlout + tooltestsTabOnly = """<tests><test> + <param name="input1" value="%(test1Input)s" ftype="tabular"/> + <param name="job_name" value="test1"/> + <param name="runMe" value="$runMe"/> + <output name="tab_file" file="%(test1Output)s" ftype="tabular"/> + </test></tests>""" + tooltestsHTMLOnly = """<tests><test> + <param name="input1" value="%(test1Input)s" ftype="tabular"/> + <param name="job_name" value="test1"/> + <param name="runMe" value="$runMe"/> + <output name="html_file" file="%(test1HTML)s" ftype="html" lines_diff="5"/> + </test></tests>""" + tooltestsBoth = """<tests><test> + <param name="input1" value="%(test1Input)s" ftype="tabular"/> + <param name="job_name" value="test1"/> + <param name="runMe" value="$runMe"/> + <output name="tab_file" file="%(test1Output)s" ftype="tabular" /> + <output name="html_file" file="%(test1HTML)s" ftype="html" lines_diff="10"/> + </test></tests>""" + xdict = {} + xdict['tool_version'] = self.opts.tool_version + xdict['test1Input'] = self.test1Input + xdict['test1HTML'] = self.test1HTML + xdict['test1Output'] = self.test1Output + if self.opts.make_HTML and self.opts.output_tab <> 'None': + xdict['tooltests'] = tooltestsBoth % xdict + elif self.opts.make_HTML: + xdict['tooltests'] = tooltestsHTMLOnly % xdict + else: + xdict['tooltests'] = tooltestsTabOnly % xdict + xdict['script'] = self.script # configfile is least painful way to embed script to avoid external dependencies + if self.opts.help_text: + xdict['help'] = open(self.opts.help_text,'r').read() + else: + xdict['help'] = 'Please ask the tool author for help as none was supplied at tool generation' + coda = ['**Script**','Pressing execute will run the following code over your input file and generate some outputs in your history::'] + coda.append(self.indentedScript) + coda.append('**Attribution** This Galaxy tool was created by %s at %s\nusing the Galaxy Tool Factory.' % (self.opts.user_email,timenow())) + coda.append('See %s for details of that project' % (toolFactoryURL)) + xdict['help'] = '%s\n%s' % (xdict['help'],'\n'.join(coda)) + if self.opts.tool_desc: + xdict['tooldesc'] = '<description>%s</description>' % self.opts.tool_desc + else: + xdict['tooldesc'] = '' + xdict['command_outputs'] = '' + xdict['outputs'] = '' + if self.opts.input_tab <> 'None': + xdict['command_inputs'] = '--input_tab "$input1" ' # the space may matter a lot if we append something + xdict['inputs'] = '<param name="input1" type="data" format="%s" label="Select a suitable input file from your history"/> \n' % self.inputFormats + else: + xdict['command_inputs'] = '' # assume no input - eg a random data generator + xdict['inputs'] = '' + xdict['inputs'] += '<param name="job_name" type="text" label="Supply a name for the outputs to remind you what they contain" value="%s"/> \n' % self.toolname + xdict['toolname'] = self.toolname + xdict['toolid'] = self.toolid + xdict['interpreter'] = self.opts.interpreter + xdict['scriptname'] = self.sfile + if self.opts.make_HTML: + xdict['command_outputs'] += ' --output_dir "$html_file.files_path" --output_html "$html_file" --make_HTML "yes" ' + xdict['outputs'] += ' <data format="html" name="html_file" label="${job_name}.html"/>\n' + if self.opts.output_tab <> 'None': + xdict['command_outputs'] += ' --output_tab "$tab_file"' + xdict['outputs'] += ' <data format="%s" name="tab_file" label="${job_name}"/>\n' % self.outFormats + xdict['command'] = newCommand % xdict + xmls = newXML % xdict + xf = open(self.xmlfile,'w') + xf.write(xmls) + xf.write('\n') + xf.close() + # ready for the tarball + + + def makeTooltar(self): + """ + a tool is a gz tarball with eg + /toolname/tool.xml /toolname/tool.py /toolname/test-data/test1_in.foo ... + """ + retval = self.run() + if retval: + print >> sys.stderr,'## Run failed. Cannot build yet. Please fix and retry' + sys.exit(1) + self.makeXML() + tdir = self.toolname + os.mkdir(tdir) + if self.opts.input_tab <> 'None': # no reproducible test otherwise? TODO: maybe.. + testdir = os.path.join(tdir,'test-data') + os.mkdir(testdir) # make tests directory + shutil.copyfile(self.opts.input_tab,os.path.join(testdir,self.test1Input)) + if self.opts.output_tab <> 'None': + shutil.copyfile(self.opts.output_tab,os.path.join(testdir,self.test1Output)) + if self.opts.make_HTML: + shutil.copyfile(self.opts.output_html,os.path.join(testdir,self.test1HTML)) + if self.opts.output_dir: + shutil.copyfile(self.tlog,os.path.join(testdir,'test1_out.log')) + op = '%s.py' % self.toolname # new name + outpiname = os.path.join(tdir,op) # path for the tool tarball + pyin = os.path.basename(self.pyfile) # our name - we rewrite ourselves (TM) + notes = ['# %s - a self annotated version of %s generated by running %s\n' % (op,pyin,pyin),] + notes.append('# to make a new Galaxy tool called %s\n' % self.toolname) + notes.append('# User %s at %s\n' % (self.opts.user_email,timenow())) + pi = open(self.pyfile,'r').readlines() # our code becomes new tool wrapper (!) - first Galaxy worm + notes += pi + outpi = open(outpiname,'w') + outpi.write(''.join(notes)) + outpi.write('\n') + outpi.close() + stname = os.path.join(tdir,self.sfile) + if not os.path.exists(stname): + shutil.copyfile(self.sfile, stname) + xtname = os.path.join(tdir,self.xmlfile) + if not os.path.exists(xtname): + shutil.copyfile(self.xmlfile,xtname) + tarpath = "%s.gz" % self.toolname + tar = tarfile.open(tarpath, "w:gz") + tar.add(tdir,arcname=self.toolname) + tar.close() + shutil.copyfile(tarpath,self.opts.new_tool) + shutil.rmtree(tdir) + ## TODO: replace with optional direct upload to local toolshed? + return retval + + def compressPDF(self,inpdf=None,thumbformat='png'): + """need absolute path to pdf + """ + assert os.path.isfile(inpdf), "## Input %s supplied to %s compressPDF not found" % (inpdf,self.myName) + hf,hlog = tempfile.mkstemp(suffix="%s.log" % self.toolname) + sto = open(hlog,'w') + outpdf = '%s_compressed' % inpdf + cl = ["gs", "-sDEVICE=pdfwrite", "-dNOPAUSE", "-dBATCH", "-sOutputFile=%s" % outpdf,inpdf] + x = subprocess.Popen(cl,stdout=sto,stderr=sto,cwd=self.opts.output_dir) + retval1 = x.wait() + if retval1 == 0: + os.unlink(inpdf) + shutil.move(outpdf,inpdf) + outpng = '%s.%s' % (os.path.splitext(inpdf)[0],thumbformat) + cl2 = ['convert', inpdf, outpng] + x = subprocess.Popen(cl2,stdout=sto,stderr=sto,cwd=self.opts.output_dir) + retval2 = x.wait() + sto.close() + retval = retval1 or retval2 + return retval + + + def getfSize(self,fpath,outpath): + """ + format a nice file size string + """ + size = '' + fp = os.path.join(outpath,fpath) + if os.path.isfile(fp): + size = '0 B' + n = float(os.path.getsize(fp)) + if n > 2**20: + size = '%1.1f MB' % (n/2**20) + elif n > 2**10: + size = '%1.1f KB)' % (n/2**10) + elif n > 0: + size = '%d B' % (int(n)) + return size + + def makeHtml(self): + """ Create an HTML file content to list all the artifacts found in the output_dir + """ + + galhtmlprefix = """<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> + <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> + <head> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> + <meta name="generator" content="Galaxy %s tool output - see http://g2.trac.bx.psu.edu/" /> + <title></title> + <link rel="stylesheet" href="/static/style/base.css" type="text/css" /> + </head> + <body> + <div class="toolFormBody"> + """ + galhtmlattr = """<hr/><div class="infomessage">This tool (%s) was generated by the <a href="https://bitbucket.org/fubar/galaxytoolfactory/overview">Galaxy Tool Factory</a></div><br/>""" + galhtmlpostfix = """</div></body></html>\n""" + + flist = os.listdir(self.opts.output_dir) + flist = [x for x in flist if x <> 'Rplots.pdf'] + flist.sort() + html = [] + html.append(galhtmlprefix % progname) + html.append('<div class="infomessage">Galaxy Tool "%s" run at %s</div><br/>' % (self.toolname,timenow())) + fhtml = [] + if len(flist) > 0: + pdflist = [] + npdf = len([x for x in flist if os.path.splitext(x)[-1].lower() == '.pdf']) + nacross = 1 + if npdf > 0: + nacross = int(round(math.log(npdf,2))) + nacross = max(1,nacross) + width = min(400,int(1200/nacross)) + for rownum,fname in enumerate(flist): + dname,e = os.path.splitext(fname) + sfsize = self.getfSize(fname,self.opts.output_dir) + if e.lower() == '.pdf' : # compress and make a thumbnail + thumb = '%s.%s' % (dname,self.thumbformat) + pdff = os.path.join(self.opts.output_dir,fname) + retval = self.compressPDF(inpdf=pdff,thumbformat=self.thumbformat) + if retval == 0: + pdflist.append((fname,thumb)) + if (rownum+1) % 2 == 0: + fhtml.append('<tr class="odd_row"><td><a href="%s">%s</a></td><td>%s</td></tr>' % (fname,fname,sfsize)) + else: + fhtml.append('<tr><td><a href="%s">%s</a></td><td>%s</td></tr>' % (fname,fname,sfsize)) + ntogo = nacross # counter for table row padding with empty cells + if len(pdflist) > 0: + html.append('<div><table class="simple" cellpadding="2" cellspacing="2">\n<tr>') + for i,paths in enumerate(pdflist): + fname,thumb = paths + s= """<td><a href="%s"><img src="%s" title="Click to download a PDF of %s" hspace="5" width="%d" + alt="Image called %s"/></a></td>\n""" % (fname,thumb,fname,width,fname) + if ((i+1) % nacross == 0): + s += '</tr>\n' + ntogo = 0 + if i < (npdf - 1): # more to come + s += '<tr>' + ntogo = nacross + else: + ntogo -= 1 + html.append(s) + if html[-1].strip().endswith('</tr>'): + html.append('</table></div>\n') + else: + if ntogo > 0: # pad + html.append('<td> </td>'*ntogo) + html.append('</tr></table></div>\n') + if len(fhtml) > 0: + fhtml.insert(0,'<div><table class="colored" cellpadding="3" cellspacing="3"><tr><th>Output File Name (click to view)</th><th>Size</th></tr>\n') + fhtml.append('</table></div><br/>') + html += fhtml # add all non-pdf files to the end of the display + else: + html.append('<div class="warningmessagelarge">### Error - %s returned no files - please confirm that parameters are sane</div>' % self.opts.interpreter) + rlog = open(self.tlog,'r').readlines() + rlog = [x for x in rlog if x.strip() > ''] + if len(rlog) > 1: + html.append('<div class="toolFormTitle">%s log</div><pre>\n' % self.opts.interpreter) + html += rlog + html.append('</pre>\n') + html.append(galhtmlattr % (self.toolname)) + html.append(galhtmlpostfix) + htmlf = file(self.opts.output_html,'w') + htmlf.write('\n'.join(html)) + htmlf.write('\n') + htmlf.close() + self.html = html + + + def run(self): + """ + scripts must be small enough not to fill the pipe! + """ + if self.treatbashSpecial and self.opts.interpreter in ['bash','sh']: + retval = self.runBash() + else: + if self.opts.output_dir: + sto = open(self.tlog,'w') + sto.write('## Toolfactory generated command line = %s\n' % ' '.join(self.cl)) + sto.flush() + p = subprocess.Popen(self.cl,shell=False,stdout=sto,stderr=sto,stdin=subprocess.PIPE,cwd=self.opts.output_dir) + else: + p = subprocess.Popen(self.cl,shell=False,stdin=subprocess.PIPE) + p.stdin.write(self.script) + p.stdin.close() + retval = p.wait() + if self.opts.output_dir: + sto.close() + if self.opts.make_HTML: + self.makeHtml() + return retval + + def runBash(self): + """ + cannot use - for bash so use self.sfile + """ + if self.opts.output_dir: + s = '## Toolfactory generated command line = %s\n' % ' '.join(self.cl) + sto = open(self.tlog,'w') + sto.write(s) + sto.flush() + p = subprocess.Popen(self.cl,shell=False,stdout=sto,stderr=sto,cwd=self.opts.output_dir) + else: + p = subprocess.Popen(self.cl,shell=False) + retval = p.wait() + if self.opts.output_dir: + sto.close() + if self.opts.make_HTML: + self.makeHtml() + return retval + + +def main(): + u = """ + This is a Galaxy wrapper. It expects to be called by a special purpose tool.xml as: + <command interpreter="python">rgBaseScriptWrapper.py --script_path "$scriptPath" --tool_name "foo" --interpreter "Rscript" + </command> + """ + op = optparse.OptionParser() + a = op.add_option + a('--script_path',default=None) + a('--tool_name',default=None) + a('--interpreter',default=None) + a('--output_dir',default=None) + a('--output_html',default=None) + a('--input_tab',default="None") + a('--output_tab',default="None") + a('--user_email',default='Unknown') + a('--bad_user',default=None) + a('--make_Tool',default=None) + a('--make_HTML',default=None) + a('--help_text',default=None) + a('--tool_desc',default=None) + a('--new_tool',default=None) + a('--tool_version',default=None) + opts, args = op.parse_args() + assert not opts.bad_user,'UNAUTHORISED: %s is NOT authorized to use this tool until Galaxy admin adds %s to admin_users in universe_wsgi.ini' % (opts.bad_user,opts.bad_user) + assert opts.tool_name,'## Tool Factory expects a tool name - eg --tool_name=DESeq' + assert opts.interpreter,'## Tool Factory wrapper expects an interpreter - eg --interpreter=Rscript' + assert os.path.isfile(opts.script_path),'## Tool Factory wrapper expects a script path - eg --script_path=foo.R' + if opts.output_dir: + try: + os.makedirs(opts.output_dir) + except: + pass + r = ScriptRunner(opts) + if opts.make_Tool: + retcode = r.makeTooltar() + else: + retcode = r.run() + os.unlink(r.sfile) + if retcode: + sys.exit(retcode) # indicate failure to job runner + + +if __name__ == "__main__": + main() + + +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/convertvcf4toannovar/convertvcf4toannovar.xml Thu Oct 04 17:44:54 2012 -0400 @@ -0,0 +1,40 @@ +<tool id="convertvcf4toannovar" name="convertvcf4toannovar" version="0.01"> + <description>Convert VCF4 file to ANNOVAR input format</description> + <command interpreter="python"> + convertvcf4toannovar.py --script_path "$runMe" --interpreter "sh" + --tool_name "convertvcf4toannovar" --input_tab "$input1" --output_tab "$tab_file" + </command> + <inputs> + <param name="input1" type="data" format="tabular" label="Select a suitable input file from your history"/> +<param name="job_name" type="text" label="Supply a name for the outputs to remind you what they contain" value="convertvcf4toannovar"/> + + </inputs> + <outputs> + <data format="tabular" name="tab_file" label="${job_name}"/> + + </outputs> + <configfiles> + <configfile name="runMe"> + /usr/local/annovar/convert2annovar.pl $1 --format vcf4 > $2 2> /dev/null + </configfile> + </configfiles> + <tests><test> + <param name="input1" value="convertvcf4toannovar_test1_input.xls" ftype="tabular"/> + <param name="job_name" value="test1"/> + <param name="runMe" value="$runMe"/> + <output name="tab_file" file="convertvcf4toannovar_test1_output.xls" ftype="tabular"/> + </test></tests> + <help> + +**What it Does** + +This tool takes a VCF v4 formatted variant file and converts it to ANNOVAR input format. See http://www.openbioinformatics.org/annovar/annovar_input.html#conversion for more information. + +**Script** +Pressing execute will run the following code over your input file and generate some outputs in your history:: + /usr/local/annovar/convert2annovar.pl $1 --format vcf4 > $2 2> /dev/null +**Attribution** This Galaxy tool was created by hooverdm@helix.nih.gov at 04/10/2012 17:41:19 +using the Galaxy Tool Factory. +See https://bitbucket.org/fubar/galaxytoolfactory for details of that project + </help> + </tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/convertvcf4toannovar/test-data/convertvcf4toannovar_test1_input.xls Thu Oct 04 17:44:54 2012 -0400 @@ -0,0 +1,10000 @@ +##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed"> +##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed"> +chr1 882006 . C T 121.68 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.775;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=5.5312;MLEAC=5;MLEAF=0.625;MQ=22.77;MQ0=0;MQRankSum=1.431;QD=3.58;ReadPosRankSum=-0.596;SB=1.99 GT:AD:DP:GQ:PL 0/1:5,1:6:17:17,0,19 0/1:2,2:5:20:27,0,20 1/1:5,4:9:9:83,9,0 0/1:11,2:13:39:39,0,90 +chr1 887958 . C A 100.42 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.112;DP=84;Dels=0.00;FS=2.401;HaplotypeScore=1.6375;MLEAC=3;MLEAF=0.375;MQ=20.70;MQ0=0;MQRankSum=3.495;QD=1.59;ReadPosRankSum=-3.135;SB=1.43 GT:AD:DP:GQ:PL 0/1:16,1:17:33:35,0,33 0/1:19,2:21:46:46,0,57 0/1:23,2:25:20:62,0,20 0/0:21,0:21:9:0,9,94 +chr1 906029 . T G 172.78 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.958;DP=95;Dels=0.00;FS=72.053;HaplotypeScore=3.3747;MLEAC=3;MLEAF=0.375;MQ=28.10;MQ0=0;MQRankSum=-0.841;QD=2.30;ReadPosRankSum=-1.406;SB=-2.131e+00 GT:AD:DP:GQ:PL 0/0:17,3:20:16:0,16,444 0/1:20,5:25:99:120,0,326 0/1:27,2:29:2:2,0,606 0/1:17,4:21:91:91,0,250 +chr1 907456 . G C 32.63 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.157;DP=52;Dels=0.02;FS=12.063;HaplotypeScore=7.8645;MLEAC=3;MLEAF=0.500;MQ=20.05;MQ0=0;MQRankSum=0.972;QD=0.86;ReadPosRankSum=0.324;SB=-2.658e-01 GT:AD:DP:GQ:PL ./. 0/1:9,1:10:13:13,0,65 0/1:10,1:11:16:16,0,17 0/1:13,3:17:42:42,0,69 +chr1 1147443 . G A 42.09 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.515;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=3;MLEAF=0.375;MQ=22.99;MQ0=0;MQRankSum=0.596;QD=1.62;ReadPosRankSum=-1.892;SB=-1.106e-01 GT:AD:DP:GQ:PL 0/1:7,3:10:46:46,0,87 0/0:7,0:7:6:0,6,58 0/1:9,2:11:18:18,0,153 0/1:4,1:5:20:20,0,90 +chr1 1249829 . C T 70.01 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.380;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.4805;MLEAC=3;MLEAF=0.750;MQ=26.09;MQ0=0;MQRankSum=0.720;QD=10.00;ReadPosRankSum=-0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:2,2:4:26:44,0,26 ./. 1/1:1,2:3:6:62,6,0 +chr1 1254841 rs10907179 C G 1531.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.307;DB;DP=68;Dels=0.03;FS=30.951;HaplotypeScore=5.1761;MLEAC=8;MLEAF=1.00;MQ=29.99;MQ0=0;MQRankSum=3.236;QD=22.53;ReadPosRankSum=0.876;SB=-3.401e+01 GT:AD:DP:GQ:PL 1/1:5,13:18:39:480,39,0 1/1:6,12:18:36:423,36,0 1/1:8,10:18:27:307,27,0 1/1:1,11:12:30:361,30,0 +chr1 1262552 . G C 101.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.131;DP=38;Dels=0.00;FS=8.766;HaplotypeScore=6.2668;MLEAC=3;MLEAF=0.375;MQ=18.29;MQ0=0;MQRankSum=1.703;QD=2.91;ReadPosRankSum=-0.767;SB=-2.092e+00 GT:AD:DP:GQ:PL 0/1:10,2:12:19:19,0,62 0/1:7,6:13:23:55,0,23 0/1:6,4:10:61:69,0,61 0/0:3,0:3:3:0,3,26 +chr1 1263144 rs307350 G A 499.63 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.339;DB;DP=38;Dels=0.00;FS=6.262;HaplotypeScore=2.6383;MLEAC=6;MLEAF=0.750;MQ=30.15;MQ0=0;MQRankSum=2.937;QD=13.15;ReadPosRankSum=-0.527;SB=-2.298e+02 GT:AD:DP:GQ:PL 0/1:3,4:7:39:127,0,39 1/1:6,4:10:9:113,9,0 0/1:5,7:12:28:238,0,28 1/1:7,2:9:6:66,6,0 +chr1 1268135 rs142726401 T G 38.30 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.652;DB;DP=21;Dels=0.05;FS=13.570;HaplotypeScore=0.2496;MLEAC=2;MLEAF=0.250;MQ=27.48;MQ0=0;MQRankSum=-1.709;QD=2.39;ReadPosRankSum=-0.295;SB=-8.775e-03 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,31 0/1:5,3:8:25:25,0,158 0/1:5,3:8:52:52,0,59 0/0:3,0:3:3:0,3,33 +chr1 1289197 . G T 47.44 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.752;DP=39;Dels=0.00;FS=8.096;HaplotypeScore=1.5924;MLEAC=3;MLEAF=0.375;MQ=26.50;MQ0=0;MQRankSum=-0.026;QD=1.53;ReadPosRankSum=1.892;SB=-1.221e-01 GT:AD:DP:GQ:PL 0/0:8,0:8:15:0,15,162 1/1:4,1:5:3:29,3,0 0/1:8,1:10:11:11,0,157 0/1:12,4:16:51:51,0,65 +chr1 1500052 . T A 286.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.924;DP=225;Dels=0.00;FS=129.381;HaplotypeScore=7.1471;MLEAC=3;MLEAF=0.375;MQ=30.03;MQ0=0;MQRankSum=-3.545;QD=1.65;ReadPosRankSum=3.654;SB=0.892 GT:AD:DP:GQ:PL 0/1:43,11:54:99:131,0,941 0/1:56,12:68:99:109,0,1276 0/1:45,7:52:90:90,0,838 0/0:45,5:50:39:0,39,977 +chr1 1653021 . G C 53.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.198;DP=103;Dels=0.01;FS=4.330;HaplotypeScore=3.5037;MLEAC=3;MLEAF=0.375;MQ=12.08;MQ0=0;MQRankSum=2.406;QD=1.16;ReadPosRankSum=-0.332;SB=19.74 GT:AD:DP:GQ:PL 1/1:17,2:19:6:62,6,0 0/0:32,1:33:6:0,6,47 0/1:25,2:27:34:34,0,59 0/0:22,0:23:3:0,3,23 +chr1 1887245 rs28575980 G A 601.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.388;DB;DP=76;Dels=0.00;FS=2.119;HaplotypeScore=5.0039;MLEAC=4;MLEAF=0.500;MQ=32.43;MQ0=0;MQRankSum=-1.711;QD=7.92;ReadPosRankSum=0.927;SB=-2.202e+02 GT:AD:DP:GQ:PL 0/1:13,7:20:99:161,0,393 0/1:12,5:17:99:108,0,265 0/1:14,10:24:99:251,0,411 0/1:11,4:15:99:124,0,115 +chr1 2106612 . G T 68.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.771;DP=59;Dels=0.02;FS=2.465;HaplotypeScore=3.4282;MLEAC=3;MLEAF=0.375;MQ=27.84;MQ0=0;MQRankSum=-1.555;QD=1.62;ReadPosRankSum=-0.933;SB=-1.048e+00 GT:AD:DP:GQ:PL 0/1:10,1:11:2:2,0,229 0/1:13,3:16:52:52,0,257 0/0:16,1:17:1:0,1,254 0/1:9,4:14:52:52,0,198 +chr1 2317410 . C T 62 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.974;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9160;MLEAC=3;MLEAF=0.375;MQ=29.98;MQ0=0;MQRankSum=-2.199;QD=1.13;ReadPosRankSum=1.618;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,1:20:6:0,6,318 0/1:14,3:17:59:59,0,173 0/1:16,2:18:22:22,0,333 0/1:18,2:20:23:23,0,285 +chr1 2436124 . C A 68.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.109;DP=108;Dels=0.00;FS=44.292;HaplotypeScore=3.9194;MLEAC=2;MLEAF=0.250;MQ=28.25;MQ0=0;MQRankSum=-1.753;QD=1.12;ReadPosRankSum=2.062;SB=2.11 GT:AD:DP:GQ:PL 0/0:18,1:19:39:0,39,487 0/1:23,5:28:37:37,0,255 0/1:28,5:33:73:73,0,615 0/0:28,0:28:42:0,42,492 +chr1 2444470 rs114254488 C T 1134.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.638;DB;DP=141;Dels=0.01;FS=12.975;HaplotypeScore=3.6203;MLEAC=3;MLEAF=0.375;MQ=34.45;MQ0=0;MQRankSum=0.728;QD=10.81;ReadPosRankSum=0.189;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:20,13:33:99:370,0,542 0/0:36,0:36:99:0,108,1322 0/1:16,15:31:99:467,0,421 0/1:27,12:40:99:341,0,853 +chr1 2451747 . C T 39.99 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.342;DP=58;Dels=0.03;FS=37.371;HaplotypeScore=9.3595;MLEAC=4;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=0.212;QD=0.69;ReadPosRankSum=-2.006;SB=0.488 GT:AD:DP:GQ:PL 0/1:17,2:19:25:25,0,322 0/1:14,1:15:15:15,0,144 0/1:8,2:10:31:31,0,117 0/1:11,1:12:11:11,0,164 +chr1 2519930 . T G 48.37 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.968;DP=155;Dels=0.01;FS=36.022;HaplotypeScore=28.8108;MLEAC=1;MLEAF=0.125;MQ=24.73;MQ0=0;MQRankSum=-2.735;QD=0.68;ReadPosRankSum=2.559;SB=-1.453e+01 GT:AD:DP:GQ:PL 0/1:33,5:39:1:1,0,577 0/1:23,8:31:83:83,0,224 0/0:39,5:47:16:0,16,721 0/0:34,2:36:24:0,24,409 +chr1 2525237 . A C 112.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.520;DP=33;Dels=0.00;FS=21.924;HaplotypeScore=4.1932;MLEAC=4;MLEAF=0.500;MQ=24.20;MQ0=0;MQRankSum=0.751;QD=3.40;ReadPosRankSum=0.520;SB=-7.401e-01 GT:AD:DP:GQ:PL 0/1:5,1:6:23:23,0,61 0/1:5,1:7:24:24,0,50 0/1:11,1:12:3:3,0,172 0/1:4,4:8:10:103,0,10 +chr1 2526859 . G T 47.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.585;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.0852;MLEAC=2;MLEAF=0.250;MQ=26.99;MQ0=0;MQRankSum=0.847;QD=1.06;ReadPosRankSum=-2.326;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:36:0,36,362 0/0:16,0:16:30:0,30,273 0/1:20,3:23:62:62,0,231 0/1:20,2:22:27:27,0,206 +chr1 2983963 rs2297828 G A 114.24 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.517;DB;DP=8;Dels=0.00;FS=4.260;HaplotypeScore=0.2416;MLEAC=7;MLEAF=0.875;MQ=29.26;MQ0=0;MQRankSum=0.684;QD=14.28;ReadPosRankSum=1.517;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:41,3,0 0/1:1,1:2:26:26,0,37 1/1:0,1:1:3:38,3,0 1/1:2,2:4:6:50,6,0 +chr1 2985690 . G C 101.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.027;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=3.8035;MLEAC=3;MLEAF=0.375;MQ=24.77;MQ0=0;MQRankSum=1.427;QD=2.82;ReadPosRankSum=0.511;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:28:28,0,92 0/0:12,0:12:9:0,9,111 0/1:10,4:14:70:86,0,70 1/1:10,1:11:3:31,3,0 +chr1 3342704 . G C 278.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.616;DP=97;Dels=0.00;FS=77.465;HaplotypeScore=12.3981;MLEAC=4;MLEAF=0.500;MQ=26.84;MQ0=0;MQRankSum=-0.294;QD=2.87;ReadPosRankSum=-1.083;SB=9.328e-04 GT:AD:DP:GQ:PL 0/1:19,2:22:40:40,0,218 0/1:22,4:26:38:38,0,342 0/1:21,8:29:99:134,0,414 0/1:12,8:20:99:109,0,205 +chr1 3385015 rs7554513 G A 38.77 . AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=0;QD=19.38;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6:70,6,0 ./. ./. +chr1 3407616 . G A 49.02 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.406;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.9083;MLEAC=5;MLEAF=0.833;MQ=24.35;MQ0=0;MQRankSum=1.537;QD=9.80;ReadPosRankSum=-0.988;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,2:3:6:64,6,0 1/1:1,1:2:3:24,3,0 0/0:2,0:2:3:0,3,32 +chr1 3555428 rs3818330 G T 661.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.512;DB;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3931;MLEAC=3;MLEAF=0.375;MQ=29.04;MQ0=0;MQRankSum=-0.104;QD=9.07;ReadPosRankSum=2.417;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,0:23:60:0,60,680 0/1:14,11:25:99:280,0,307 0/1:15,8:23:99:189,0,315 0/1:15,10:25:99:236,0,274 +chr1 3746583 rs2275828 G T 886.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.469;DB;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=0.7330;MLEAC=4;MLEAF=0.500;MQ=30.78;MQ0=0;MQRankSum=-3.230;QD=15.29;ReadPosRankSum=0.489;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,0:21:63:0,63,747 1/1:0,19:19:51:582,51,0 0/1:12,8:20:99:208,0,335 0/1:11,7:18:99:145,0,366 +chr1 3750729 rs6677381 A G 111.46 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.264;DB;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.8453;MLEAC=3;MLEAF=0.500;MQ=30.31;MQ0=0;MQRankSum=1.001;QD=12.38;ReadPosRankSum=-0.896;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:15:0,15,204 1/1:1,2:3:6:82,6,0 0/1:3,3:6:61:71,0,61 ./. +chr1 3797919 rs116294018 T C 35.01 . AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=29.61;MQ0=0;QD=17.51;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,1:1:3:32,3,0 ./. 1/1:0,1:1:3:36,3,0 ./. +chr1 5910277 . G C 43.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=17.18;MQ0=0;MQRankSum=0.736;QD=8.60;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,1:3:3:36,3,0 ./. 1/1:1,1:2:3:40,3,0 +chr1 6133685 . G T 44.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.018;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.8212;MLEAC=3;MLEAF=0.375;MQ=24.64;MQ0=0;MQRankSum=0.333;QD=1.23;ReadPosRankSum=-0.999;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:6:6,0,135 0/1:12,2:14:40:40,0,156 0/0:15,0:15:27:0,27,269 0/1:9,3:12:40:40,0,132 +chr1 6151483 . T G 152.88 . AC=4;AF=0.667;AN=6;BaseQRankSum=2.401;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.0624;MLEAC=4;MLEAF=0.667;MQ=16.69;MQ0=0;MQRankSum=1.330;QD=3.82;ReadPosRankSum=-0.060;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:23:23,0,43 1/1:8,8:16:2:151,2,0 0/1:10,4:14:17:17,0,37 ./. +chr1 6202132 . C A 30.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.019;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=4.6766;MLEAC=2;MLEAF=0.250;MQ=31.95;MQ0=0;MQRankSum=-0.615;QD=0.46;ReadPosRankSum=-2.578;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:41,1:42:42:0,42,854 0/1:30,3:34:27:27,0,753 0/0:33,0:33:78:0,78,937 0/1:28,4:32:45:45,0,736 +chr1 6228180 rs58385986 A C 139.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.735;DB;DP=151;Dels=0.03;FS=2.185;HaplotypeScore=7.7490;MLEAC=1;MLEAF=0.125;MQ=31.15;MQ0=0;MQRankSum=-3.131;QD=4.37;ReadPosRankSum=1.889;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,102,1249 0/1:18,10:28:99:176,0,461 0/0:42,0:42:99:0,102,1258 0/0:39,0:39:78:0,78,817 +chr1 6314479 rs12740426 C T 732.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.955;DB;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=31.24;MQ0=0;MQRankSum=-4.621;QD=14.09;ReadPosRankSum=0.878;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:51:566,51,0 0/1:9,3:12:57:57,0,316 0/1:10,5:15:52:52,0,325 0/1:2,4:6:53:103,0,53 +chr1 6504578 . C T 31.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.302;DP=102;Dels=0.01;FS=17.297;HaplotypeScore=9.6688;MLEAC=3;MLEAF=0.375;MQ=27.79;MQ0=0;MQRankSum=0.685;QD=0.41;ReadPosRankSum=-2.054;SB=-2.914e+00 GT:AD:DP:GQ:PL 0/1:14,2:16:1:1,0,243 0/1:27,3:30:58:58,0,363 0/1:29,2:31:11:11,0,375 0/0:23,1:24:10:0,10,370 +chr1 6527833 . C A 73.31 . AC=6;AF=0.750;AN=8;BaseQRankSum=-2.383;DP=20;Dels=0.00;FS=3.979;HaplotypeScore=1.7013;MLEAC=6;MLEAF=0.750;MQ=24.14;MQ0=0;MQRankSum=-1.133;QD=3.67;ReadPosRankSum=0.365;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:31,3,0 1/1:3,2:5:6:50,6,0 0/1:5,2:7:14:14,0,67 0/1:4,1:5:21:21,0,35 +chr1 6533016 . G A 182.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.435;DP=52;Dels=0.00;FS=13.696;HaplotypeScore=3.1030;MLEAC=4;MLEAF=0.500;MQ=27.94;MQ0=0;MQRankSum=-1.170;QD=3.51;ReadPosRankSum=0.979;SB=0.074 GT:AD:DP:GQ:PL 0/1:8,5:13:99:102,0,111 0/1:7,3:10:78:78,0,106 0/1:15,3:18:29:29,0,244 0/1:9,2:11:16:16,0,142 +chr1 6585898 . A T 41.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.042;DP=145;Dels=0.00;FS=6.807;HaplotypeScore=9.0065;MLEAC=1;MLEAF=0.125;MQ=34.68;MQ0=0;MQRankSum=-3.185;QD=2.28;ReadPosRankSum=-1.323;SB=0.034 GT:AD:DP:GQ:PL 0/0:33,2:35:19:0,19,780 0/0:45,3:48:69:0,69,1312 0/0:44,0:44:99:0,99,1269 0/1:14,4:18:77:77,0,263 +chr1 6636603 . C G 423.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.301;DP=212;Dels=0.00;FS=75.798;HaplotypeScore=9.7184;MLEAC=4;MLEAF=0.500;MQ=35.26;MQ0=0;MQRankSum=-3.295;QD=2.00;ReadPosRankSum=0.297;SB=-2.090e-02 GT:AD:DP:GQ:PL 0/1:43,7:50:99:107,0,1271 0/1:50,5:55:26:26,0,1413 0/1:53,10:63:99:174,0,1501 0/1:35,9:44:99:159,0,867 +chr1 6649164 . C T 87.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.034;DP=73;Dels=0.00;FS=107.332;HaplotypeScore=3.1633;MLEAC=4;MLEAF=0.500;MQ=24.70;MQ0=0;MQRankSum=-0.474;QD=1.20;ReadPosRankSum=1.039;SB=-2.352e+00 GT:AD:DP:GQ:PL 0/1:19,2:21:23:23,0,366 0/1:16,5:21:80:80,0,270 0/1:14,3:17:22:22,0,271 0/1:12,2:14:4:4,0,142 +chr1 6705874 rs200454 G C 4390.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.884;DB;DP=232;Dels=0.00;FS=3.554;HaplotypeScore=7.5452;MLEAC=6;MLEAF=0.750;MQ=33.78;MQ0=0;MQRankSum=-5.508;QD=18.92;ReadPosRankSum=1.187;SB=-1.584e+03 GT:AD:DP:GQ:PL 0/1:34,18:52:99:474,0,789 0/1:39,21:60:99:637,0,1274 1/1:5,48:53:99:1737,138,0 1/1:16,50:66:91:1542,91,0 +chr1 7527996 rs1201529 T C 1643.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.005;DB;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.4580;MLEAC=5;MLEAF=0.625;MQ=34.50;MQ0=0;MQRankSum=-4.123;QD=11.03;ReadPosRankSum=-0.089;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:5,27:32:81:930,81,0 0/1:32,14:46:99:335,0,1045 0/1:29,13:42:99:352,0,925 0/1:24,5:29:72:72,0,763 +chr1 7725191 . G C 127.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.097;DP=60;Dels=0.00;FS=22.576;HaplotypeScore=6.9580;MLEAC=4;MLEAF=0.500;MQ=27.43;MQ0=0;MQRankSum=-0.395;QD=2.13;ReadPosRankSum=0.731;SB=-1.192e+00 GT:AD:DP:GQ:PL 0/1:13,2:15:32:32,0,182 0/1:12,1:13:4:4,0,172 0/1:13,3:16:32:32,0,249 0/1:11,5:16:99:101,0,207 +chr1 7861214 . C A 61.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.521;DP=146;Dels=0.01;FS=54.386;HaplotypeScore=5.0562;MLEAC=2;MLEAF=0.250;MQ=27.34;MQ0=0;MQRankSum=-2.198;QD=0.66;ReadPosRankSum=1.130;SB=4.41 GT:AD:DP:GQ:PL 0/0:33,2:35:39:0,39,685 0/1:42,9:51:68:68,0,741 0/1:37,6:43:35:35,0,693 0/0:15,0:15:18:0,18,216 +chr1 7880469 rs228691 A G 423.52 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.747;DB;DP=39;Dels=0.03;FS=7.636;HaplotypeScore=0.9304;MLEAC=4;MLEAF=0.500;MQ=33.08;MQ0=0;MQRankSum=-1.184;QD=12.10;ReadPosRankSum=-0.929;SB=-8.283e+01 GT:AD:DP:GQ:PL 0/1:6,3:9:85:85,0,166 1/1:3,6:9:18:234,18,0 0/1:11,5:16:99:151,0,395 0/0:4,0:4:6:0,6,60 +chr1 7887493 rs228696 T C 1866.56 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.131;DB;DP=103;Dels=0.05;FS=20.729;HaplotypeScore=9.7267;MLEAC=8;MLEAF=1.00;MQ=26.16;MQ0=0;MQRankSum=3.588;QD=18.12;ReadPosRankSum=1.564;SB=-2.635e+02 GT:AD:DP:GQ:PL 1/1:7,18:25:54:605,54,0 1/1:12,15:27:3:422,3,0 1/1:8,20:28:48:548,48,0 1/1:5,13:18:30:330,30,0 +chr1 7889804 rs228701 C G 241.72 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.370;DB;DP=54;Dels=0.00;FS=6.451;HaplotypeScore=0.4138;MLEAC=7;MLEAF=0.875;MQ=15.55;MQ0=0;MQRankSum=1.477;QD=4.48;ReadPosRankSum=-0.414;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,10:23:74:74,0,83 1/1:0,10:10:3:22,3,0 1/1:0,11:11:6:46,6,0 1/1:0,10:10:15:142,15,0 +chr1 8385955 . A C 314.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.142;DP=119;Dels=0.00;FS=45.458;HaplotypeScore=3.6611;MLEAC=4;MLEAF=0.500;MQ=31.98;MQ0=0;MQRankSum=-2.942;QD=2.64;ReadPosRankSum=2.184;SB=-1.227e-02 GT:AD:DP:GQ:PL 0/1:18,8:27:99:143,0,470 0/1:30,5:35:76:76,0,729 0/1:27,5:32:39:39,0,825 0/1:20,5:25:99:99,0,449 +chr1 8397803 rs7520373 C T 84.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.955;DB;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.4894;MLEAC=1;MLEAF=0.125;MQ=33.81;MQ0=0;MQRankSum=-1.612;QD=3.86;ReadPosRankSum=-0.924;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,6:22:99:121,0,502 0/0:23,0:23:69:0,69,865 0/0:21,0:21:63:0,63,762 0/0:25,0:25:72:0,72,823 +chr1 8415290 rs1889853 C A 196 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.976;DB;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.4689;MLEAC=3;MLEAF=0.375;MQ=32.49;MQ0=0;MQRankSum=0.168;QD=7.26;ReadPosRankSum=0.922;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:15:0,15,168 0/1:7,5:12:99:163,0,146 0/1:5,1:6:21:21,0,180 0/1:6,3:9:55:55,0,95 +chr1 8555042 . C T 1261.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.673;DP=177;Dels=0.00;FS=2.519;HaplotypeScore=1.8709;MLEAC=3;MLEAF=0.375;MQ=35.59;MQ0=0;MQRankSum=-3.376;QD=9.42;ReadPosRankSum=-1.382;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,18:51:99:490,0,1045 0/0:42,0:43:99:0,123,1586 0/1:38,15:53:99:372,0,1307 0/1:14,16:30:99:443,0,410 +chr1 8923231 . C T 83.58 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.905;DP=58;Dels=0.02;FS=2.460;HaplotypeScore=7.0613;MLEAC=3;MLEAF=0.375;MQ=20.99;MQ0=0;MQRankSum=1.737;QD=1.94;ReadPosRankSum=-0.490;SB=-3.690e-01 GT:AD:DP:GQ:PL 0/1:11,4:16:73:73,0,120 0/1:12,1:13:9:9,0,116 0/0:13,1:14:21:0,21,189 0/1:12,2:14:37:44,0,37 +chr1 9011586 rs3765968 T G 4406.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.438;DB;DP=194;Dels=0.02;FS=4.059;HaplotypeScore=2.1912;MLEAC=6;MLEAF=0.750;MQ=34.04;MQ0=0;MQRankSum=-4.098;QD=22.71;ReadPosRankSum=1.348;SB=-2.087e+03 GT:AD:DP:GQ:PL 0/1:22,22:44:99:707,0,676 0/1:25,18:43:99:445,0,656 1/1:6,55:61:99:1941,153,0 1/1:5,38:43:87:1313,87,0 +chr1 9211611 . G A 61.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.063;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=12.2187;MLEAC=2;MLEAF=0.250;MQ=27.05;MQ0=0;MQRankSum=-0.489;QD=1.76;ReadPosRankSum=1.994;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:33:33,0,112 0/0:23,1:25:42:0,42,430 0/0:23,0:24:27:0,27,277 0/1:14,3:17:70:70,0,186 +chr1 9323457 rs731183 G C 99.23 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.159;DB;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.4453;MLEAC=1;MLEAF=0.125;MQ=21.25;MQ0=0;MQRankSum=1.814;QD=9.92;ReadPosRankSum=0.907;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,5:10:25:135,0,25 0/0:10,0:10:9:0,9,90 0/0:14,0:14:30:0,30,304 0/0:11,0:11:12:0,12,129 +chr1 9714271 . A G 86.06 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.260;DP=134;Dels=0.01;FS=43.323;HaplotypeScore=31.1858;MLEAC=4;MLEAF=0.500;MQ=26.39;MQ0=0;MQRankSum=-2.153;QD=0.64;ReadPosRankSum=1.121;SB=-4.733e-01 GT:AD:DP:GQ:PL 0/1:33,2:36:11:11,0,453 0/1:28,3:32:15:15,0,313 0/1:29,2:32:17:17,0,329 0/1:28,4:32:85:85,0,135 +chr1 9816521 . G A,T 36.22 . AC=2,1;AF=0.250,0.125;AN=8;BaseQRankSum=-1.648;DP=90;Dels=0.02;FS=1.736;HaplotypeScore=1.9501;MLEAC=2,1;MLEAF=0.250,0.125;MQ=25.58;MQ0=0;MQRankSum=-0.857;QD=0.45;ReadPosRankSum=3.550;SB=-1.233e+00 GT:AD:DP:GQ:PL 0/2:22,0,2:24:36:36,57,252,0,195,189 0/1:16,5,0:21:62:62,0,213,86,222,308 0/1:31,4,0:35:9:9,0,285,42,291,334 0/0:7,1,0:8:3:0,3,33,3,33,33 +chr1 10093618 . A T 142.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.250;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=4.3838;MLEAC=4;MLEAF=0.500;MQ=32.31;MQ0=0;MQRankSum=-1.517;QD=1.90;ReadPosRankSum=1.750;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,2:21:45:45,0,160 0/1:14,4:19:88:88,0,240 0/1:15,1:18:11:11,0,178 0/1:13,2:16:41:41,0,86 +chr1 10382024 . T A 53.07 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.100;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7449;MLEAC=3;MLEAF=0.375;MQ=24.17;MQ0=0;MQRankSum=-0.433;QD=1.90;ReadPosRankSum=0.633;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:17:17,0,54 0/0:10,0:10:6:0,6,64 0/1:13,2:15:32:32,0,131 0/1:3,2:5:19:46,0,19 +chr1 10386506 rs12135774 T C 554.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.353;DB;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.0704;MLEAC=3;MLEAF=0.375;MQ=37.01;MQ0=0;MQRankSum=-3.237;QD=6.93;ReadPosRankSum=3.362;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:72:0,72,980 0/1:17,9:26:99:262,0,440 0/1:25,4:29:67:67,0,835 0/1:16,9:25:99:269,0,292 +chr1 10421868 . C G 158.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.706;DP=144;Dels=0.00;FS=63.724;HaplotypeScore=12.9932;MLEAC=4;MLEAF=0.500;MQ=34.37;MQ0=0;MQRankSum=-4.907;QD=1.10;ReadPosRankSum=2.093;SB=-1.208e-02 GT:AD:DP:GQ:PL 0/1:37,4:41:43:43,0,850 0/1:28,5:33:53:53,0,751 0/1:37,7:44:48:48,0,977 0/1:22,4:26:57:57,0,400 +chr1 10479630 . C G 129.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.857;DP=99;Dels=0.00;FS=27.374;HaplotypeScore=13.3280;MLEAC=4;MLEAF=0.500;MQ=25.39;MQ0=0;MQRankSum=1.469;QD=1.31;ReadPosRankSum=0.435;SB=-1.794e-02 GT:AD:DP:GQ:PL 0/1:23,3:26:48:48,0,277 0/1:21,2:23:29:29,0,280 0/1:23,3:26:33:33,0,390 0/1:21,3:24:62:62,0,176 +chr1 10521794 . C G 89.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.616;DP=83;Dels=0.02;FS=0.000;HaplotypeScore=3.5186;MLEAC=4;MLEAF=0.500;MQ=24.93;MQ0=0;MQRankSum=-2.155;QD=1.08;ReadPosRankSum=2.623;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,2:22:23:23,0,202 0/1:16,2:18:20:20,0,183 0/1:16,4:20:42:42,0,200 0/1:17,3:21:47:47,0,164 +chr1 10703203 . G GC 390.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.243;DP=65;FS=3.017;HaplotypeScore=19.5612;MLEAC=3;MLEAF=0.375;MQ=25.45;MQ0=0;MQRankSum=-1.615;QD=7.97;ReadPosRankSum=2.521;SB=-1.030e+02 GT:AD:DP:GQ:PL 0/0:16,0:13:39:0,39,523 0/1:12,5:12:99:235,0,213 0/1:15,4:18:99:128,0,525 0/1:10,3:7:80:80,0,99 +chr1 10707903 . T G 58.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.025;DP=86;Dels=0.00;FS=11.192;HaplotypeScore=6.7039;MLEAC=2;MLEAF=0.250;MQ=31.40;MQ0=0;MQRankSum=0.068;QD=1.47;ReadPosRankSum=0.518;SB=-2.436e-02 GT:AD:DP:GQ:PL 0/0:16,0:17:36:0,36,451 0/1:14,2:16:24:24,0,288 0/0:29,0:29:66:0,66,749 0/1:20,4:24:76:76,0,357 +chr1 10720445 . G T 57.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.776;DP=47;Dels=0.02;FS=12.305;HaplotypeScore=3.0289;MLEAC=3;MLEAF=0.375;MQ=30.10;MQ0=0;MQRankSum=0.555;QD=1.50;ReadPosRankSum=-2.921;SB=16.82 GT:AD:DP:GQ:PL 0/0:8,0:9:15:0,15,173 0/1:12,2:14:28:28,0,139 0/1:13,2:15:27:27,0,288 0/1:6,2:8:45:45,0,113 +chr1 10725498 rs284322 G A 158.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.295;DB;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4574;MLEAC=3;MLEAF=0.375;MQ=25.75;MQ0=0;MQRankSum=1.237;QD=5.10;ReadPosRankSum=0.648;SB=-6.189e+01 GT:AD:DP:GQ:PL 0/0:10,0:10:21:0,21,226 0/1:11,1:12:15:15,0,93 0/1:6,6:12:65:171,0,65 0/1:6,1:7:15:15,0,45 +chr1 11008006 . T C 60.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.490;DP=52;Dels=0.00;FS=33.075;HaplotypeScore=3.9983;MLEAC=3;MLEAF=0.375;MQ=30.53;MQ0=0;MQRankSum=-0.543;QD=1.56;ReadPosRankSum=0.578;SB=-1.556e+00 GT:AD:DP:GQ:PL 0/0:12,0:13:21:0,21,233 0/1:12,3:15:64:64,0,226 0/1:11,2:13:34:34,0,219 0/1:10,1:11:4:4,0,265 +chr1 11022020 rs6685896 C T 37.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=20.24;MQ0=0;MQRankSum=0.736;QD=12.34;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:40,3,0 ./. 1/1:0,1:1:3:30,3,0 +chr1 11116015 . G C 30.30 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.326;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=5.5618;MLEAC=2;MLEAF=0.333;MQ=19.34;MQ0=0;MQRankSum=0.979;QD=2.33;ReadPosRankSum=-1.501;SB=-2.646e+00 GT:AD:DP:GQ:PL ./. 0/0:8,1:9:6:0,6,45 0/1:3,2:6:34:42,0,34 0/1:6,1:7:16:26,0,16 +chr1 11128629 . G T 57.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.149;DP=89;Dels=0.04;FS=0.000;HaplotypeScore=10.3572;MLEAC=4;MLEAF=0.500;MQ=26.18;MQ0=0;MQRankSum=0.697;QD=0.65;ReadPosRankSum=0.855;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,2:19:2:2,0,290 0/1:16,2:19:17:17,0,215 0/1:21,3:24:61:61,0,262 0/1:21,1:23:18:18,0,134 +chr1 11217157 . A T 73.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.770;DP=105;Dels=0.02;FS=0.000;HaplotypeScore=28.6900;MLEAC=3;MLEAF=0.375;MQ=17.48;MQ0=0;MQRankSum=2.791;QD=0.82;ReadPosRankSum=-2.841;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:6:0,6,52 0/1:28,3:32:38:38,0,117 0/1:25,3:28:53:55,0,53 0/1:27,1:29:23:23,0,51 +chr1 11288633 rs4845986 G C 317.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.272;DB;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=35.23;MQ0=0;MQRankSum=-3.236;QD=4.67;ReadPosRankSum=1.576;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:28:28,0,495 0/1:11,2:13:44:44,0,194 0/1:13,10:23:99:254,0,415 0/1:12,2:14:34:34,0,293 +chr1 11291276 . A T 586.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.054;DP=262;Dels=0.00;FS=35.208;HaplotypeScore=7.0622;MLEAC=4;MLEAF=0.500;MQ=33.85;MQ0=0;MQRankSum=-6.432;QD=2.24;ReadPosRankSum=-1.375;SB=-1.247e-01 GT:AD:DP:GQ:PL 0/1:48,10:58:99:169,0,1116 0/1:72,6:78:15:15,0,1616 0/1:51,11:63:99:148,0,1129 0/1:43,19:62:99:297,0,927 +chr1 11294256 . G T 32.71 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.392;DP=151;Dels=0.03;FS=72.798;HaplotypeScore=25.8788;MLEAC=2;MLEAF=0.250;MQ=29.15;MQ0=0;MQRankSum=-2.886;QD=0.48;ReadPosRankSum=1.515;SB=-1.052e+00 GT:AD:DP:GQ:PL 0/0:31,3:34:19:0,19,559 0/1:34,4:38:50:50,0,550 0/0:41,5:46:17:0,17,838 0/1:27,2:29:24:24,0,300 +chr1 11333789 . G C 34.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.326;DP=79;Dels=0.00;FS=12.677;HaplotypeScore=5.9624;MLEAC=2;MLEAF=0.250;MQ=25.36;MQ0=0;MQRankSum=-0.259;QD=0.83;ReadPosRankSum=1.843;SB=0.737 GT:AD:DP:GQ:PL 0/1:19,3:23:49:49,0,259 0/0:17,0:17:27:0,27,280 0/1:17,2:19:27:27,0,203 0/0:20,0:20:15:0,15,139 +chr1 11346114 . C T 311.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.095;DP=265;Dels=0.00;FS=118.002;HaplotypeScore=4.3782;MLEAC=4;MLEAF=0.500;MQ=29.40;MQ0=0;MQRankSum=0.170;QD=1.18;ReadPosRankSum=3.956;SB=-1.760e-02 GT:AD:DP:GQ:PL 0/1:55,9:64:99:161,0,926 0/1:54,6:61:49:49,0,1017 0/1:69,8:77:28:28,0,1385 0/1:54,9:63:99:116,0,874 +chr1 11575375 rs2594318 T A 338.03 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.953;DB;DP=30;Dels=0.03;FS=4.803;HaplotypeScore=2.3007;MLEAC=6;MLEAF=0.750;MQ=24.37;MQ0=0;MQRankSum=1.953;QD=11.27;ReadPosRankSum=0.315;SB=25.45 GT:AD:DP:GQ:PL 1/1:1,3:4:9:116,9,0 1/1:5,4:10:12:114,12,0 1/1:2,4:6:12:113,12,0 0/1:6,3:9:18:38,0,18 +chr1 11595293 rs2235661 A G 40.31 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.540;DB;DP=17;Dels=0.00;FS=2.667;HaplotypeScore=0.9159;MLEAC=4;MLEAF=0.667;MQ=17.69;MQ0=0;MQRankSum=1.620;QD=3.10;ReadPosRankSum=0.077;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,1:2:22:22,0,34 ./. 1/1:3,1:4:3:34,3,0 0/1:5,2:7:23:23,0,47 +chr1 11718864 . C A 91.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.006;DP=83;Dels=0.00;FS=20.572;HaplotypeScore=3.7159;MLEAC=2;MLEAF=0.250;MQ=29.65;MQ0=0;MQRankSum=0.231;QD=1.95;ReadPosRankSum=1.449;SB=0.345 GT:AD:DP:GQ:PL 0/1:16,3:20:52:52,0,328 0/0:13,0:13:27:0,27,293 0/1:23,4:27:81:81,0,290 0/0:22,1:23:36:0,36,380 +chr1 11735843 . G T 64.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.363;DP=61;Dels=0.03;FS=2.631;HaplotypeScore=11.6220;MLEAC=3;MLEAF=0.375;MQ=21.07;MQ0=0;MQRankSum=-1.966;QD=1.34;ReadPosRankSum=0.238;SB=-7.383e-03 GT:AD:DP:GQ:PL 0/1:14,5:19:35:35,0,107 0/0:13,0:13:30:0,30,289 0/1:7,4:11:66:66,0,164 0/1:12,4:16:5:5,0,111 +chr1 11779762 rs12117076 C T 235.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.462;DB;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7366;MLEAC=3;MLEAF=0.375;MQ=31.87;MQ0=0;MQRankSum=-0.892;QD=7.86;ReadPosRankSum=-0.123;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,3:6:29:108,0,29 0/0:11,0:11:21:0,21,269 0/1:9,5:14:84:84,0,246 0/1:5,5:10:87:87,0,155 +chr1 11851170 . C A 30.20 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.130;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.3894;MLEAC=1;MLEAF=0.125;MQ=24.06;MQ0=0;MQRankSum=0.635;QD=2.32;ReadPosRankSum=-0.127;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:13:38:66,0,38 0/0:23,1:24:27:0,27,284 0/0:20,1:21:14:0,14,355 0/0:12,0:12:9:0,9,87 +chr1 12172029 . G C 46.57 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.404;DP=57;Dels=0.00;FS=39.411;HaplotypeScore=6.3204;MLEAC=3;MLEAF=0.375;MQ=32.55;MQ0=0;MQRankSum=-0.951;QD=1.11;ReadPosRankSum=0.336;SB=0.066 GT:AD:DP:GQ:PL 0/1:12,2:14:30:30,0,249 0/1:11,2:13:28:28,0,318 0/1:13,2:15:31:31,0,323 0/0:14,1:15:8:0,8,380 +chr1 12248774 . A G 63.43 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.814;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0945;MLEAC=3;MLEAF=0.375;MQ=24.49;MQ0=0;MQRankSum=1.386;QD=1.24;ReadPosRankSum=-0.786;SB=-1.155e+00 GT:AD:DP:GQ:PL 0/1:11,1:12:2:2,0,149 0/1:20,2:22:36:36,0,150 0/0:19,1:20:7:0,7,247 0/1:14,3:17:65:65,0,110 +chr1 12403143 rs180901875 G C 242.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.596;DB;DP=52;Dels=0.00;FS=2.507;HaplotypeScore=1.5055;MLEAC=4;MLEAF=0.500;MQ=22.49;MQ0=0;MQRankSum=3.795;QD=4.67;ReadPosRankSum=-2.277;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:39:39,0,75 0/1:12,3:15:38:77,0,38 0/1:11,5:16:97:148,0,97 0/1:10,1:11:21:21,0,86 +chr1 12461698 . T C 71.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.207;DP=100;Dels=0.02;FS=25.005;HaplotypeScore=18.6517;MLEAC=4;MLEAF=0.500;MQ=24.99;MQ0=0;MQRankSum=-2.593;QD=0.72;ReadPosRankSum=0.525;SB=-1.918e+00 GT:AD:DP:GQ:PL 0/1:16,2:18:47:47,0,74 0/1:30,5:35:48:48,0,224 0/1:28,5:34:7:7,0,153 0/1:10,1:11:11:11,0,86 +chr1 12640570 . G A 74.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.373;DP=90;Dels=0.02;FS=31.705;HaplotypeScore=21.7262;MLEAC=3;MLEAF=0.375;MQ=24.16;MQ0=0;MQRankSum=-0.099;QD=0.83;ReadPosRankSum=-0.326;SB=5.44 GT:AD:DP:GQ:PL 0/1:15,4:20:56:56,0,217 0/1:18,2:22:44:44,0,149 0/1:23,1:26:10:10,0,142 0/1:19,1:20:6:6,0,158 +chr1 12785248 . CCA C 612.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.155;DP=79;FS=27.066;HaplotypeScore=62.9246;MLEAC=4;MLEAF=0.500;MQ=22.08;MQ0=0;MQRankSum=-1.475;QD=7.75;ReadPosRankSum=-1.110;SB=-1.799e+01 GT:AD:DP:GQ:PL 0/1:12,6:15:99:270,0,176 0/1:16,6:14:86:191,0,86 0/1:12,4:13:55:55,0,153 0/1:10,4:13:99:148,0,146 +chr1 12887739 rs78582467 C T 133.64 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.090;DB;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=1.5604;MLEAC=5;MLEAF=0.625;MQ=9.15;MQ0=0;MQRankSum=2.154;QD=1.04;ReadPosRankSum=-1.572;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:27,5:32:9:81,9,0 0/1:30,1:32:20:20,0,76 0/1:30,5:35:22:48,0,22 0/1:24,5:29:19:29,0,19 +chr1 12921316 . C T 74.29 . AC=5;AF=0.625;AN=8;BaseQRankSum=-4.019;DP=179;Dels=0.00;FS=26.151;HaplotypeScore=3.4364;MLEAC=4;MLEAF=0.500;MQ=7.88;MQ0=0;MQRankSum=1.096;QD=0.52;ReadPosRankSum=2.969;SB=2.04 GT:AD:DP:GQ:PL 1/1:34,5:39:3:23,3,0 1/1:51,4:55:3:29,3,0 0/1:44,4:48:19:66,0,19 0/0:34,3:37:9:0,9,96 +chr1 13142746 . C T 161.43 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.099;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.3847;MLEAC=4;MLEAF=0.500;MQ=21.62;MQ0=0;MQRankSum=-1.772;QD=1.72;ReadPosRankSum=2.457;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,3:26:24:24,0,171 0/1:15,9:24:91:91,0,145 0/1:22,2:24:2:2,0,178 0/1:16,4:20:85:85,0,120 +chr1 13171847 rs57674869 A G 176.46 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.589;DB;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.4947;MLEAC=3;MLEAF=0.375;MQ=13.39;MQ0=0;MQRankSum=-0.857;QD=1.82;ReadPosRankSum=-2.382;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,9:36:9:0,9,115 0/1:24,9:33:24:98,0,24 0/1:22,14:36:14:66,0,14 0/1:16,12:28:55:55,0,58 +chr1 13172503 rs61780789 C T 392.17 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.478;DB;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.2495;MLEAC=6;MLEAF=0.750;MQ=12.76;MQ0=0;MQRankSum=2.361;QD=3.32;ReadPosRankSum=1.617;SB=-2.926e+01 GT:AD:DP:GQ:PL 1/1:18,8:26:9:116,9,0 1/1:26,8:36:6:72,6,0 0/1:18,11:29:22:123,0,22 0/1:21,5:27:10:125,0,10 +chr1 13942427 . T G 48.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.426;DP=184;Dels=0.00;FS=9.148;HaplotypeScore=2.6679;MLEAC=1;MLEAF=0.125;MQ=34.99;MQ0=0;MQRankSum=0.097;QD=0.92;ReadPosRankSum=-1.274;SB=-2.211e+00 GT:AD:DP:GQ:PL 0/0:36,1:37:42:0,42,736 0/0:39,1:40:65:0,65,1067 0/0:51,4:55:19:0,19,1203 0/1:47,5:52:84:84,0,696 +chr1 14105139 rs2076324 T A 260.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.696;DB;DP=88;Dels=0.01;FS=12.529;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=21.13;MQ0=0;MQRankSum=-2.428;QD=2.96;ReadPosRankSum=0.761;SB=-6.300e+01 GT:AD:DP:GQ:PL 0/1:1,16:17:11:113,0,11 0/1:14,10:24:45:45,0,186 0/1:16,13:29:73:73,0,377 0/1:10,7:17:72:72,0,81 +chr1 14142935 . T G 299.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.055;DP=203;Dels=0.03;FS=151.966;HaplotypeScore=15.8089;MLEAC=3;MLEAF=0.375;MQ=36.02;MQ0=0;MQRankSum=-6.672;QD=1.97;ReadPosRankSum=1.479;SB=0.728 GT:AD:DP:GQ:PL 0/1:32,5:38:58:58,0,1075 0/0:43,6:49:20:0,20,1335 0/1:52,11:63:99:157,0,1651 0/1:37,9:46:99:128,0,1031 +chr1 15382739 rs71631706 C G 429.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.238;DB;DP=102;Dels=0.00;FS=47.573;HaplotypeScore=5.2740;MLEAC=4;MLEAF=0.500;MQ=28.48;MQ0=0;MQRankSum=-4.589;QD=4.21;ReadPosRankSum=1.406;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:16,7:23:83:83,0,368 0/1:21,7:28:68:68,0,513 0/1:19,10:29:99:139,0,478 0/1:12,10:22:99:182,0,213 +chr1 15386888 . T C 140.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.493;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.4762;MLEAC=2;MLEAF=0.250;MQ=33.97;MQ0=0;MQRankSum=-3.135;QD=2.81;ReadPosRankSum=1.332;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:21:98:98,0,167 0/1:23,6:29:84:84,0,482 0/0:24,1:25:33:0,33,625 0/0:28,1:29:35:0,35,665 +chr1 15767089 . G T 215.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.447;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=4;MLEAF=0.500;MQ=33.37;MQ0=0;MQRankSum=-0.459;QD=2.40;ReadPosRankSum=0.084;SB=-1.193e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:36:36,0,389 0/1:18,6:24:99:124,0,444 0/1:19,4:23:56:56,0,429 0/1:18,3:21:42:42,0,172 +chr1 15769139 rs3765373 G A 1353.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.353;DB;DP=70;Dels=0.01;FS=4.901;HaplotypeScore=4.1557;MLEAC=5;MLEAF=0.625;MQ=30.69;MQ0=0;MQRankSum=0.413;QD=19.34;ReadPosRankSum=-0.544;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:57:692,57,0 0/1:7,5:12:99:144,0,144 0/1:4,10:14:99:274,0,102 0/1:12,12:24:99:289,0,276 +chr1 15809927 . G A 40.26 . AC=6;AF=1.00;AN=6;BaseQRankSum=-0.361;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.6299;MLEAC=6;MLEAF=1.00;MQ=15.32;MQ0=0;MQRankSum=1.881;QD=1.75;ReadPosRankSum=-0.729;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:6,1:7:3:27,3,0 1/1:8,1:9:3:25,3,0 1/1:5,2:7:3:23,3,0 +chr1 15831193 . C A 99.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.792;DP=139;Dels=0.00;FS=180.338;HaplotypeScore=4.4899;MLEAC=3;MLEAF=0.375;MQ=34.57;MQ0=0;MQRankSum=-2.241;QD=0.91;ReadPosRankSum=-0.462;SB=2.87 GT:AD:DP:GQ:PL 0/0:28,1:29:78:0,78,980 0/1:29,5:34:79:79,0,826 0/1:33,6:39:59:59,0,1054 0/1:32,5:37:2:2,0,976 +chr1 15833323 . G C 30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.164;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.1422;MLEAC=3;MLEAF=0.375;MQ=26.04;MQ0=0;MQRankSum=-1.418;QD=0.59;ReadPosRankSum=0.672;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:24:0,24,280 0/1:13,1:14:6:6,0,139 0/1:19,3:22:58:58,0,202 0/1:13,2:15:6:6,0,144 +chr1 15873386 rs7515244 A G 1228.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.483;DB;DP=79;Dels=0.00;FS=6.826;HaplotypeScore=0.1972;MLEAC=5;MLEAF=0.625;MQ=34.61;MQ0=0;MQRankSum=-0.103;QD=15.55;ReadPosRankSum=0.244;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,19:20:51:676,51,0 0/1:14,8:22:99:267,0,325 0/1:17,9:26:99:229,0,543 0/1:7,4:11:75:102,0,75 +chr1 15983211 . T A 113.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.310;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.0186;MLEAC=3;MLEAF=0.375;MQ=39.76;MQ0=0;MQRankSum=-4.891;QD=0.74;ReadPosRankSum=-0.391;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:42,8:50:99:128,0,1209 0/0:45,2:47:55:0,55,1528 0/1:60,6:66:20:20,0,1662 0/1:32,3:36:7:7,0,940 +chr1 16054370 . G C 39.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.942;DP=25;Dels=0.04;FS=2.769;HaplotypeScore=1.1350;MLEAC=2;MLEAF=0.250;MQ=25.81;MQ0=0;MQRankSum=0.673;QD=3.63;ReadPosRankSum=0.269;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,1:6:3:23,3,0 0/0:2,0:2:6:0,6,70 0/0:12,0:12:12:0,12,140 0/1:2,2:4:26:59,0,26 +chr1 16065888 rs111308421 A C 147.24 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.359;DB;DP=57;Dels=0.00;FS=11.429;HaplotypeScore=13.9524;MLEAC=4;MLEAF=0.500;MQ=23.51;MQ0=0;MQRankSum=1.115;QD=3.78;ReadPosRankSum=-1.417;SB=25.77 GT:AD:DP:GQ:PL 1/1:5,2:7:6:57,6,0 0/1:12,5:18:65:91,0,65 0/1:12,2:14:44:44,0,85 0/0:15,1:18:9:0,9,102 +chr1 16069503 . C T 33.13 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.566;DP=106;Dels=0.03;FS=1.318;HaplotypeScore=1.2276;MLEAC=2;MLEAF=0.250;MQ=32.69;MQ0=0;MQRankSum=-2.728;QD=0.72;ReadPosRankSum=0.694;SB=-2.575e+01 GT:AD:DP:GQ:PL 0/1:23,3:26:14:14,0,583 0/0:27,1:28:25:0,25,642 0/0:27,2:29:37:0,37,685 0/1:16,4:20:60:60,0,233 +chr1 16330816 rs1763617 C T 47.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.002;DB;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7830;MLEAC=1;MLEAF=0.125;MQ=33.29;MQ0=0;MQRankSum=-0.554;QD=5.33;ReadPosRankSum=1.150;SB=-1.596e+01 GT:AD:DP:GQ:PL 0/1:6,3:9:84:84,0,139 0/0:15,0:15:39:0,39,518 0/0:13,0:13:27:0,27,326 0/0:13,0:13:36:0,36,434 +chr1 16332503 . G C 33.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.303;DP=222;Dels=0.00;FS=28.931;HaplotypeScore=16.1142;MLEAC=1;MLEAF=0.125;MQ=30.52;MQ0=0;MQRankSum=-3.080;QD=0.65;ReadPosRankSum=0.692;SB=-5.257e+00 GT:AD:DP:GQ:PL 0/0:53,3:56:12:0,12,1044 0/0:62,0:62:99:0,99,1210 0/0:50,3:53:35:0,35,971 0/1:45,6:51:69:69,0,793 +chr1 16459745 rs10907223 G A 373.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.233;DB;DP=133;Dels=0.01;FS=4.710;HaplotypeScore=2.7909;MLEAC=1;MLEAF=0.125;MQ=34.51;MQ0=0;MQRankSum=0.400;QD=12.06;ReadPosRankSum=1.120;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:17,13:30:99:410,0,405 0/0:32,0:32:69:0,69,884 0/0:41,0:41:99:0,111,1477 0/0:29,0:29:63:0,63,766 +chr1 16461746 . C A 87.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.200;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=13.9173;MLEAC=3;MLEAF=0.375;MQ=25.57;MQ0=0;MQRankSum=-1.688;QD=1.99;ReadPosRankSum=-1.802;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:21:0,21,226 0/1:13,7:20:99:100,0,153 0/1:13,3:16:19:19,0,194 0/1:7,1:8:11:11,0,67 +chr1 16531245 . C T 34.36 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.586;DP=53;Dels=0.00;FS=8.502;HaplotypeScore=7.9729;MLEAC=3;MLEAF=0.375;MQ=23.77;MQ0=0;MQRankSum=0.780;QD=0.82;ReadPosRankSum=-2.391;SB=-7.477e-01 GT:AD:DP:GQ:PL 0/1:17,1:18:11:11,0,169 0/1:11,1:12:23:24,0,23 0/1:10,2:12:42:42,0,124 0/0:11,0:11:21:0,21,218 +chr1 16847832 rs277462 T C 40.01 . AC=4;AF=1.00;AN=4;DB;DP=7;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=20.11;MQ0=0;QD=13.34;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:3:41,3,0 ./. ./. 1/1:0,1:1:3:32,3,0 +chr1 16891003 rs653454 C A 1578.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.994;DB;DP=171;Dels=0.00;FS=5.867;HaplotypeScore=10.3377;MLEAC=4;MLEAF=0.500;MQ=23.39;MQ0=0;MQRankSum=2.579;QD=9.23;ReadPosRankSum=2.100;SB=-5.450e+02 GT:AD:DP:GQ:PL 0/1:29,15:44:99:345,0,390 0/1:17,29:46:74:658,0,74 0/1:32,16:48:99:432,0,239 0/1:22,11:33:99:186,0,126 +chr1 16891333 rs3872309 C T 165.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.981;DB;DP=580;Dels=0.00;FS=2.166;HaplotypeScore=42.8548;MLEAC=1;MLEAF=0.125;MQ=16.06;MQ0=0;MQRankSum=1.563;QD=0.91;ReadPosRankSum=5.837;SB=-6.644e-03 GT:AD:DP:GQ:PL 0/0:162,0:162:99:0,207,2000 0/1:145,37:183:99:202,0,750 0/0:157,5:162:97:0,97,1078 0/0:70,1:71:51:0,51,517 +chr1 16893140 . A C 563.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.908;DP=237;Dels=0.00;FS=85.858;HaplotypeScore=3.5941;MLEAC=4;MLEAF=0.500;MQ=22.04;MQ0=0;MQRankSum=4.927;QD=2.38;ReadPosRankSum=4.341;SB=-4.353e-02 GT:AD:DP:GQ:PL 0/1:53,8:61:99:125,0,592 0/1:48,11:59:99:216,0,405 0/1:56,4:61:20:20,0,596 0/1:45,11:56:99:245,0,220 +chr1 16903026 rs3897291 C A 67.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.975;DB;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.1371;MLEAC=3;MLEAF=0.375;MQ=15.30;MQ0=0;MQRankSum=2.299;QD=0.85;ReadPosRankSum=-1.770;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:15:0,15,157 0/1:23,3:27:26:26,0,50 0/1:27,2:29:57:57,0,136 0/1:21,3:24:26:28,0,26 +chr1 16973057 rs57585017 G A 63.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.014;DB;DP=209;Dels=0.00;FS=2.573;HaplotypeScore=1.1125;MLEAC=2;MLEAF=0.250;MQ=9.31;MQ0=0;MQRankSum=-0.382;QD=0.72;ReadPosRankSum=1.142;SB=-2.488e+01 GT:AD:DP:GQ:PL 0/1:27,9:36:19:26,0,19 0/0:58,0:58:6:0,6,63 0/0:47,16:63:9:0,9,89 0/1:46,6:52:78:78,0,105 +chr1 17038811 rs1736696 C G 37.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=5;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=20.37;MQ0=0;MQRankSum=1.026;QD=9.25;ReadPosRankSum=1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:38,3,0 ./. ./. 1/1:1,1:2:3:32,3,0 +chr1 17183281 rs150144028 T G 42.08 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.289;DB;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.6635;MLEAC=2;MLEAF=0.333;MQ=19.00;MQ0=0;MQRankSum=0.825;QD=3.83;ReadPosRankSum=2.637;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:18:53,0,18 ./. 0/1:4,2:6:22:26,0,22 0/0:3,0:3:3:0,3,35 +chr1 17249221 . G T 87.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.730;DP=123;Dels=0.00;FS=78.317;HaplotypeScore=16.4645;MLEAC=3;MLEAF=0.375;MQ=25.47;MQ0=0;MQRankSum=-2.992;QD=0.94;ReadPosRankSum=-1.217;SB=0.543 GT:AD:DP:GQ:PL 0/1:26,5:31:34:34,0,369 0/1:23,6:29:64:64,0,326 0/1:28,5:33:32:32,0,341 0/0:26,3:30:10:0,10,458 +chr1 17292123 . T A 255.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.504;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.8461;MLEAC=4;MLEAF=0.500;MQ=26.14;MQ0=0;MQRankSum=0.437;QD=2.64;ReadPosRankSum=3.888;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,9:28:99:165,0,236 0/1:16,5:21:72:72,0,158 0/1:22,3:25:40:40,0,306 0/1:19,3:23:21:21,0,226 +chr1 17297289 rs9435656 C T 216.43 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.456;DB;DP=37;Dels=0.00;FS=2.098;HaplotypeScore=2.5134;MLEAC=7;MLEAF=0.875;MQ=28.08;MQ0=0;MQRankSum=0.912;QD=5.85;ReadPosRankSum=0.532;SB=-8.093e+01 GT:AD:DP:GQ:PL 1/1:2,2:4:6:66,6,0 0/1:15,1:16:15:15,0,245 1/1:6,2:8:6:74,6,0 1/1:5,4:9:9:104,9,0 +chr1 17322519 . T C 250.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.363;DP=121;Dels=0.01;FS=25.846;HaplotypeScore=6.6775;MLEAC=3;MLEAF=0.375;MQ=27.40;MQ0=0;MQRankSum=0.079;QD=2.73;ReadPosRankSum=0.842;SB=-1.190e-02 GT:AD:DP:GQ:PL 0/1:25,8:33:99:137,0,423 0/0:27,2:29:16:0,16,341 0/1:29,6:35:99:108,0,427 0/1:20,3:23:49:49,0,318 +chr1 17405916 rs2057095 C T 591.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.845;DB;DP=127;Dels=0.00;FS=2.278;HaplotypeScore=0.4999;MLEAC=1;MLEAF=0.125;MQ=38.92;MQ0=0;MQRankSum=2.172;QD=19.10;ReadPosRankSum=1.039;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,0:34:96:0,96,1283 0/1:14,17:31:99:628,0,363 0/0:29,0:29:87:0,87,1145 0/0:33,0:33:90:0,90,1207 +chr1 17409241 rs2235925 G A 1180.57 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.443;DB;DP=47;Dels=0.04;FS=5.517;HaplotypeScore=2.0384;MLEAC=7;MLEAF=0.875;MQ=32.10;MQ0=0;MQRankSum=1.193;QD=25.12;ReadPosRankSum=1.761;SB=-4.001e+01 GT:AD:DP:GQ:PL 1/1:2,8:10:21:253,21,0 0/1:6,4:10:75:137,0,75 1/1:1,13:14:39:495,39,0 1/1:2,9:11:27:340,27,0 +chr1 17521235 . C G 44.26 . AC=6;AF=1.00;AN=6;BaseQRankSum=-0.573;DP=27;Dels=0.04;FS=14.150;HaplotypeScore=2.3610;MLEAC=6;MLEAF=1.00;MQ=17.67;MQ0=0;MQRankSum=2.054;QD=2.33;ReadPosRankSum=0.573;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:5,3:8:3:23,3,0 1/1:5,2:7:3:25,3,0 1/1:2,1:3:3:31,3,0 +chr1 17609505 rs187360175 G T 220.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.117;DB;DP=109;Dels=0.01;FS=54.497;HaplotypeScore=11.5540;MLEAC=4;MLEAF=0.500;MQ=28.63;MQ0=0;MQRankSum=-0.210;QD=2.03;ReadPosRankSum=1.524;SB=0.114 GT:AD:DP:GQ:PL 0/1:24,2:27:10:10,0,524 0/1:22,6:28:93:93,0,339 0/1:21,5:26:99:108,0,197 0/1:23,3:27:52:52,0,190 +chr1 17662662 rs1748033 T C 552.40 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.865;DB;DP=87;Dels=0.01;FS=4.837;HaplotypeScore=4.2255;MLEAC=4;MLEAF=0.500;MQ=37.03;MQ0=0;MQRankSum=0.102;QD=9.69;ReadPosRankSum=1.619;SB=-3.146e-01 GT:AD:DP:GQ:PL 1/1:6,13:19:17:494,17,0 0/0:30,0:30:69:0,69,892 0/1:22,4:26:98:98,0,405 0/1:10,1:11:8:8,0,267 +chr1 17718671 rs10709483 AG A 267.15 . AC=5;AF=0.833;AN=6;BaseQRankSum=-0.751;DB;DP=21;FS=9.542;HaplotypeScore=2.2351;MLEAC=6;MLEAF=1.00;MQ=32.46;MQ0=0;MQRankSum=0.751;QD=19.08;RPA=3,2;RU=G;ReadPosRankSum=0.751;SB=-1.756e+00;STR GT:AD:DP:GQ:PL 1/1:0,3:3:9:122,9,0 ./. 0/1:3,4:6:0:148,0,0 1/1:3,1:2:3:41,3,0 +chr1 17720382 . A T 616.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.002;DP=101;Dels=0.02;FS=3.012;HaplotypeScore=13.0882;MLEAC=4;MLEAF=0.500;MQ=27.82;MQ0=0;MQRankSum=-1.910;QD=6.10;ReadPosRankSum=4.274;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,13:23:99:259,0,214 0/1:17,8:25:99:138,0,239 0/1:18,6:24:94:94,0,224 0/1:17,10:27:99:168,0,265 +chr1 17914953 . C T 144.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.069;DP=98;Dels=0.01;FS=56.107;HaplotypeScore=14.4213;MLEAC=3;MLEAF=0.375;MQ=25.06;MQ0=0;MQRankSum=2.093;QD=1.85;ReadPosRankSum=-0.506;SB=-1.379e+00 GT:AD:DP:GQ:PL 0/1:20,2:23:32:32,0,214 0/0:17,1:20:12:0,12,115 0/1:29,2:33:29:29,0,280 0/1:15,5:21:99:126,0,168 +chr1 18809192 . T A 37.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.563;DP=47;Dels=0.00;FS=47.520;HaplotypeScore=0.4916;MLEAC=3;MLEAF=0.375;MQ=33.57;MQ0=0;MQRankSum=-2.278;QD=0.98;ReadPosRankSum=0.961;SB=2.88 GT:AD:DP:GQ:PL 0/1:7,1:8:10:10,0,232 0/0:8,1:9:21:0,21,262 0/1:14,4:18:63:63,0,268 0/1:11,1:12:5:5,0,216 +chr1 18809586 . A C 70.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.625;DP=50;Dels=0.02;FS=26.325;HaplotypeScore=18.7778;MLEAC=1;MLEAF=0.125;MQ=25.57;MQ0=0;MQRankSum=0.125;QD=2.62;ReadPosRankSum=0.025;SB=10.87 GT:AD:DP:GQ:PL 0/0:9,0:10:15:0,15,188 0/0:13,0:13:12:0,12,144 0/1:7,4:16:63:63,0,94 0/1:6,2:10:49:49,0,109 +chr1 19184077 rs68081213 A G 1434.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.618;DB;DP=133;Dels=0.01;FS=0.996;HaplotypeScore=1.0778;MLEAC=4;MLEAF=0.500;MQ=38.16;MQ0=0;MQRankSum=-4.475;QD=10.79;ReadPosRankSum=0.874;SB=-1.630e+02 GT:AD:DP:GQ:PL 0/1:20,10:30:99:315,0,599 0/1:21,15:36:99:454,0,603 0/1:23,15:38:99:429,0,786 0/1:19,9:28:99:279,0,498 +chr1 19200895 rs35657817 C T 1200.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.882;DB;DP=187;Dels=0.00;FS=2.811;HaplotypeScore=0.7482;MLEAC=3;MLEAF=0.375;MQ=38.14;MQ0=0;MQRankSum=-0.262;QD=8.40;ReadPosRankSum=-0.691;SB=-1.740e+02 GT:AD:DP:GQ:PL 0/1:40,11:51:99:297,0,1294 0/0:44,0:44:99:0,111,1496 0/1:33,24:57:99:754,0,1062 0/1:28,7:35:99:193,0,851 +chr1 19200908 rs28529092 G C 3118.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=6.157;DB;DP=191;Dels=0.00;FS=1.153;HaplotypeScore=1.7457;MLEAC=4;MLEAF=0.500;MQ=37.05;MQ0=0;MQRankSum=-1.074;QD=21.66;ReadPosRankSum=1.025;SB=-1.140e+03 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,138,1771 1/1:6,40:46:38:1419,38,0 0/1:28,29:57:99:958,0,806 0/1:16,25:41:99:790,0,381 +chr1 19407829 . A G 52.58 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.293;DP=84;Dels=0.02;FS=0.000;HaplotypeScore=13.9935;MLEAC=3;MLEAF=0.375;MQ=18.78;MQ0=0;MQRankSum=2.787;QD=0.81;ReadPosRankSum=-2.155;SB=-1.159e-01 GT:AD:DP:GQ:PL 0/1:18,1:20:19:19,0,67 0/0:18,0:18:9:0,9,67 0/1:15,3:18:58:58,0,75 0/1:24,1:26:18:18,0,61 +chr1 19433244 . G C 51.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.489;DP=216;Dels=0.00;FS=25.350;HaplotypeScore=3.5957;MLEAC=2;MLEAF=0.250;MQ=32.29;MQ0=0;MQRankSum=-0.090;QD=0.49;ReadPosRankSum=1.484;SB=-9.243e-02 GT:AD:DP:GQ:PL 0/1:48,5:53:56:56,0,953 0/0:52,3:56:36:0,36,1245 0/1:49,4:53:37:37,0,858 0/0:51,3:54:21:0,21,963 +chr1 19440107 rs9661719 A G 1590.76 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.064;DB;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.5476;MLEAC=7;MLEAF=0.875;MQ=28.48;MQ0=0;MQRankSum=-1.279;QD=16.07;ReadPosRankSum=1.713;SB=-3.680e+01 GT:AD:DP:GQ:PL 1/1:3,18:21:48:528,48,0 0/1:28,7:35:99:137,0,648 1/1:2,20:22:54:583,54,0 1/1:3,18:21:11:387,11,0 +chr1 19446734 . A C 187.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.267;DP=270;Dels=0.01;FS=117.160;HaplotypeScore=1.9650;MLEAC=4;MLEAF=0.500;MQ=40.48;MQ0=0;MQRankSum=-4.052;QD=0.70;ReadPosRankSum=0.620;SB=-2.346e-01 GT:AD:DP:GQ:PL 0/1:54,6:60:44:44,0,1718 0/1:53,5:58:12:12,0,1669 0/1:70,7:78:47:47,0,2029 0/1:63,8:71:99:127,0,1742 +chr1 19448608 rs7535738 C G 1375.55 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.548;DB;DP=51;Dels=0.02;FS=7.959;HaplotypeScore=0.2500;MLEAC=7;MLEAF=0.875;MQ=30.63;MQ0=0;MQRankSum=3.109;QD=26.97;ReadPosRankSum=1.786;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:51:597,51,0 0/1:8,3:11:92:92,0,150 1/1:0,10:10:30:370,30,0 1/1:0,11:11:30:361,30,0 +chr1 19484256 . A T 42.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.269;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.2290;MLEAC=1;MLEAF=0.125;MQ=36.41;MQ0=0;MQRankSum=-3.427;QD=2.69;ReadPosRankSum=-1.042;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,1:28:49:0,49,893 0/0:26,2:28:38:0,38,969 0/0:19,0:19:45:0,45,600 0/1:12,4:16:79:79,0,293 +chr1 19494600 . A C 30.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.532;DP=171;Dels=0.00;FS=141.449;HaplotypeScore=7.5646;MLEAC=2;MLEAF=0.250;MQ=32.93;MQ0=0;MQRankSum=-6.020;QD=0.41;ReadPosRankSum=0.703;SB=-1.010e+00 GT:AD:DP:GQ:PL 0/1:37,7:44:25:25,0,1109 0/0:40,3:43:40:0,40,807 0/0:49,5:54:52:0,52,1354 0/1:24,6:30:47:47,0,501 +chr1 19504306 rs12138892 C G 636.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.775;DB;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9964;MLEAC=3;MLEAF=0.375;MQ=38.77;MQ0=0;MQRankSum=-0.283;QD=11.79;ReadPosRankSum=0.208;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,11:28:99:325,0,618 0/0:19,0:19:57:0,57,778 0/1:9,9:20:99:324,0,311 0/1:5,1:6:31:31,0,112 +chr1 19595126 . G C 32.87 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.645;DP=82;Dels=0.01;FS=15.135;HaplotypeScore=5.4174;MLEAC=2;MLEAF=0.250;MQ=19.39;MQ0=0;MQRankSum=1.289;QD=0.84;ReadPosRankSum=-1.141;SB=0.256 GT:AD:DP:GQ:PL 0/1:10,1:11:19:19,0,104 0/0:23,0:23:15:0,15,152 0/1:23,3:28:55:55,0,104 0/0:19,0:19:18:0,18,201 +chr1 19611410 rs1968022 C G 762.72 . AC=6;AF=0.750;AN=8;BaseQRankSum=4.916;DB;DP=82;Dels=0.04;FS=4.611;HaplotypeScore=17.0744;MLEAC=6;MLEAF=0.750;MQ=20.33;MQ0=0;MQRankSum=4.119;QD=9.30;ReadPosRankSum=0.268;SB=-6.625e+01 GT:AD:DP:GQ:PL 0/1:6,6:12:56:107,0,56 1/1:15,10:25:1:194,1,0 0/1:10,11:22:19:248,0,19 1/1:9,11:20:8:256,8,0 +chr1 20007420 rs1883564 T C 49.01 . AC=4;AF=1.00;AN=4;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=24.46;MQ0=0;QD=16.34;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3:41,3,0 1/1:1,1:2:3:41,3,0 +chr1 20020993 rs4370779 A G 1070.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.184;DB;DP=83;Dels=0.04;FS=27.725;HaplotypeScore=13.3280;MLEAC=4;MLEAF=0.500;MQ=31.20;MQ0=0;MQRankSum=2.711;QD=17.00;ReadPosRankSum=0.979;SB=-3.933e+01 GT:AD:DP:GQ:PL 0/0:20,0:20:39:0,39,426 0/1:7,15:23:14:461,0,14 0/1:12,8:20:14:269,0,14 1/1:5,11:17:30:389,30,0 +chr1 20517966 . T G 280.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.176;DP=83;Dels=0.01;FS=2.617;HaplotypeScore=11.2475;MLEAC=3;MLEAF=0.375;MQ=31.34;MQ0=0;MQRankSum=-3.572;QD=4.39;ReadPosRankSum=3.093;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,5:16:99:107,0,173 0/1:14,6:20:99:139,0,261 0/0:18,1:19:27:0,27,290 0/1:19,7:27:78:78,0,395 +chr1 20674727 . C A 42.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.854;DP=161;Dels=0.01;FS=40.527;HaplotypeScore=5.5846;MLEAC=1;MLEAF=0.125;MQ=38.17;MQ0=0;MQRankSum=-4.459;QD=1.05;ReadPosRankSum=-2.574;SB=0.378 GT:AD:DP:GQ:PL 0/0:38,1:39:63:0,63,1157 0/0:42,2:45:76:0,76,1454 0/0:35,1:36:79:0,79,1315 0/1:33,7:40:79:79,0,1018 +chr1 20944954 . A C 89.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.148;DP=72;Dels=0.00;FS=5.037;HaplotypeScore=2.5300;MLEAC=3;MLEAF=0.375;MQ=35.88;MQ0=0;MQRankSum=-1.332;QD=1.76;ReadPosRankSum=0.543;SB=-1.938e+00 GT:AD:DP:GQ:PL 0/0:20,0:21:21:0,21,245 0/1:18,2:20:30:30,0,203 0/1:13,1:15:2:2,0,152 0/1:12,4:16:98:98,0,124 +chr1 21011614 . T G 56.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.831;DP=118;Dels=0.00;FS=3.955;HaplotypeScore=2.6155;MLEAC=2;MLEAF=0.250;MQ=34.33;MQ0=0;MQRankSum=-0.142;QD=1.11;ReadPosRankSum=-1.909;SB=-2.269e-02 GT:AD:DP:GQ:PL 0/0:29,1:30:39:0,39,721 0/1:16,3:19:67:67,0,464 0/0:37,0:37:84:0,84,1000 0/1:30,2:32:31:31,0,374 +chr1 21053545 . G A 297.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.052;DP=128;Dels=0.01;FS=37.939;HaplotypeScore=8.3176;MLEAC=3;MLEAF=0.375;MQ=31.46;MQ0=0;MQRankSum=-3.107;QD=2.95;ReadPosRankSum=0.380;SB=0.129 GT:AD:DP:GQ:PL 0/0:26,1:27:24:0,24,534 0/1:22,7:29:99:124,0,479 0/1:36,6:42:90:90,0,877 0/1:21,7:29:99:127,0,422 +chr1 21174429 rs17449243 T C 470.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.405;DB;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=1.2162;MLEAC=1;MLEAF=0.125;MQ=41.43;MQ0=0;MQRankSum=-3.239;QD=12.08;ReadPosRankSum=0.591;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,17:39:99:507,0,748 0/0:27,0:27:81:0,81,1146 0/0:33,0:33:87:0,87,1216 0/0:10,0:10:30:0,30,418 +chr1 21180250 rs7543140 G A 57.62 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.427;DB;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=36.23;MQ0=0;MQRankSum=-1.111;QD=7.20;ReadPosRankSum=0.199;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,1:11:6:0,6,312 0/1:5,3:8:93:93,0,166 0/0:11,0:11:33:0,33,421 0/0:3,0:3:6:0,6,83 +chr1 21191001 . T C 801.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.480;DP=241;Dels=0.00;FS=191.931;HaplotypeScore=14.7804;MLEAC=4;MLEAF=0.500;MQ=28.12;MQ0=0;MQRankSum=-0.340;QD=3.33;ReadPosRankSum=3.258;SB=-1.045e-02 GT:AD:DP:GQ:PL 0/1:47,9:56:99:168,0,776 0/1:49,11:60:99:161,0,827 0/1:62,17:79:99:319,0,1078 0/1:33,12:45:99:196,0,458 +chr1 21751068 rs71512975 C G 49.78 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.876;DB;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.4355;MLEAC=3;MLEAF=0.500;MQ=20.65;MQ0=0;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-1.159;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,43 1/1:6,3:9:6:71,6,0 0/1:7,2:9:18:18,0,45 ./. +chr1 21751283 . T G 102.14 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.622;DP=187;Dels=0.01;FS=4.514;HaplotypeScore=10.6276;MLEAC=4;MLEAF=0.500;MQ=15.40;MQ0=0;MQRankSum=2.345;QD=0.55;ReadPosRankSum=4.693;SB=-5.737e+01 GT:AD:DP:GQ:PL 0/1:30,6:36:26:26,0,98 0/1:35,14:49:8:8,0,127 0/1:40,12:53:83:83,0,127 0/1:36,12:48:27:27,0,122 +chr1 21752387 . T C 115.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.347;DP=166;Dels=0.00;FS=113.281;HaplotypeScore=5.7998;MLEAC=4;MLEAF=0.500;MQ=10.21;MQ0=0;MQRankSum=1.136;QD=0.70;ReadPosRankSum=1.394;SB=-2.045e+01 GT:AD:DP:GQ:PL 0/1:29,13:42:14:78,0,14 0/1:34,12:46:19:44,0,19 0/1:31,17:48:16:19,0,16 0/1:24,6:30:17:17,0,100 +chr1 21753487 . T G 204.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.956;DP=132;Dels=0.00;FS=26.406;HaplotypeScore=3.6953;MLEAC=4;MLEAF=0.500;MQ=17.42;MQ0=0;MQRankSum=-1.010;QD=1.55;ReadPosRankSum=2.417;SB=-1.130e+02 GT:AD:DP:GQ:PL 0/1:14,16:30:45:45,0,81 0/1:22,15:37:73:73,0,258 0/1:23,19:42:87:87,0,223 0/1:6,17:23:35:42,0,35 +chr1 21753506 . CAA C 1766.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.580;DP=156;FS=22.752;HaplotypeScore=56.1038;MLEAC=4;MLEAF=0.500;MQ=18.27;MQ0=0;MQRankSum=-2.993;QD=11.32;RPA=3,1;RU=A;ReadPosRankSum=-0.367;SB=-8.305e+02;STR GT:AD:DP:GQ:PL 0/1:17,20:13:99:402,0,169 0/1:23,13:19:99:545,0,255 0/1:37,10:19:99:384,0,414 0/1:17,15:18:99:487,0,157 +chr1 21792297 . T G 118.33 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.735;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5176;MLEAC=6;MLEAF=0.750;MQ=14.02;MQ0=0;MQRankSum=2.172;QD=2.19;ReadPosRankSum=0.667;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:11,1:12:3:26,3,0 0/1:12,3:15:23:53,0,23 0/1:19,3:22:20:50,0,20 1/1:2,3:5:3:31,3,0 +chr1 21806943 . C G 39.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.666;DP=18;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=15.33;MQ0=0;MQRankSum=-0.222;QD=4.34;ReadPosRankSum=0.044;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,3:5:22:47,0,22 0/0:2,1:3:3:0,3,23 0/0:3,3:6:3:0,3,33 1/1:1,3:4:3:32,3,0 +chr1 21807609 . A G 268.96 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.888;DP=98;Dels=0.00;FS=9.727;HaplotypeScore=3.4355;MLEAC=4;MLEAF=0.667;MQ=18.17;MQ0=0;MQRankSum=1.427;QD=3.49;ReadPosRankSum=0.781;SB=-2.915e+01 GT:AD:DP:GQ:PL ./. 1/1:14,4:19:3:25,3,0 0/1:21,12:33:11:170,0,11 0/1:18,7:25:9:112,0,9 +chr1 21808303 . T C 911.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.174;DP=177;Dels=0.00;FS=31.283;HaplotypeScore=12.7864;MLEAC=4;MLEAF=0.500;MQ=14.51;MQ0=0;MQRankSum=7.907;QD=5.15;ReadPosRankSum=-1.962;SB=-3.111e+02 GT:AD:DP:GQ:PL 0/1:22,22:44:13:354,0,13 0/1:23,13:36:53:149,0,53 0/1:43,19:62:77:354,0,77 0/1:24,11:35:11:97,0,11 +chr1 21808647 . G A 586.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.901;DP=158;Dels=0.03;FS=0.780;HaplotypeScore=2.5563;MLEAC=4;MLEAF=0.500;MQ=14.42;MQ0=0;MQRankSum=5.329;QD=3.71;ReadPosRankSum=-2.819;SB=-2.980e+02 GT:AD:DP:GQ:PL 0/1:20,12:32:30:204,0,30 0/1:34,16:50:44:147,0,44 0/1:31,18:49:58:195,0,58 0/1:17,6:23:50:83,0,50 +chr1 21935357 . A C 108.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.681;DP=161;Dels=0.00;FS=44.625;HaplotypeScore=4.2832;MLEAC=3;MLEAF=0.375;MQ=35.33;MQ0=0;MQRankSum=-4.842;QD=0.89;ReadPosRankSum=0.157;SB=-1.491e-01 GT:AD:DP:GQ:PL 0/1:35,5:40:50:50,0,755 0/1:43,5:48:42:42,0,1028 0/0:36,3:39:7:0,7,726 0/1:29,5:34:59:59,0,703 +chr1 21945532 . G C 32.38 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.322;DP=12;Dels=0.00;FS=7.068;HaplotypeScore=1.6211;MLEAC=4;MLEAF=0.500;MQ=27.65;MQ0=0;MQRankSum=0.322;QD=3.60;ReadPosRankSum=0.956;SB=2.98 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,26 0/1:3,1:4:17:20,0,17 0/1:2,1:4:23:23,0,71 1/1:0,1:1:3:31,3,0 +chr1 22050649 rs2275668 C A 878.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.762;DB;DP=64;Dels=0.02;FS=3.630;HaplotypeScore=0.7391;MLEAC=3;MLEAF=0.375;MQ=34.70;MQ0=0;MQRankSum=0.392;QD=22.53;ReadPosRankSum=0.064;SB=-2.719e+02 GT:AD:DP:GQ:PL 0/0:18,0:18:54:0,54,670 1/1:1,18:19:54:692,54,0 0/1:11,8:19:99:236,0,337 0/0:7,0:7:21:0,21,256 +chr1 22079189 . C T 52.53 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.158;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=7.4316;MLEAC=3;MLEAF=0.500;MQ=27.82;MQ0=0;MQRankSum=-2.460;QD=0.82;ReadPosRankSum=1.241;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:19:19,0,107 0/1:22,5:27:66:66,0,278 0/1:19,1:20:5:5,0,124 ./. +chr1 22150257 rs3736357 C T 619.18 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.837;DB;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=2.8236;MLEAC=3;MLEAF=0.375;MQ=24.15;MQ0=0;MQRankSum=-0.928;QD=11.68;ReadPosRankSum=1.198;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,12:15:1:258,1,0 0/0:20,0:20:45:0,45,463 0/1:11,13:24:99:273,0,151 0/1:7,7:14:99:131,0,99 +chr1 22157689 rs3736355 G A 274.41 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.042;DB;DP=25;Dels=0.00;FS=17.129;HaplotypeScore=1.6681;MLEAC=8;MLEAF=1.00;MQ=22.31;MQ0=0;MQRankSum=3.433;QD=10.98;ReadPosRankSum=1.119;SB=-7.226e+01 GT:AD:DP:GQ:PL 1/1:1,2:3:6:76,6,0 1/1:3,5:8:12:135,12,0 1/1:4,2:6:3:31,3,0 1/1:5,3:8:6:70,6,0 +chr1 22199821 rs2454290 G A 5298.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.479;DB;DP=164;Dels=0.02;FS=23.000;HaplotypeScore=4.2682;MLEAC=8;MLEAF=1.00;MQ=35.89;MQ0=0;MQRankSum=2.947;QD=32.30;ReadPosRankSum=3.847;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:8,32:40:96:1258,96,0 1/1:4,39:43:94:1499,94,0 1/1:5,37:42:99:1429,111,0 1/1:6,29:35:87:1112,87,0 +chr1 22204739 . C G 53.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.680;DP=54;Dels=0.00;FS=18.206;HaplotypeScore=3.1919;MLEAC=2;MLEAF=0.250;MQ=30.43;MQ0=0;MQRankSum=-1.419;QD=1.99;ReadPosRankSum=-2.039;SB=-2.271e+01 GT:AD:DP:GQ:PL 0/1:9,1:10:22:22,0,160 0/1:12,5:17:73:73,0,175 0/0:17,0:17:39:0,39,482 0/0:10,0:10:18:0,18,226 +chr1 22214279 rs114537356 C A 719.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.740;DB;DP=79;Dels=0.00;FS=11.411;HaplotypeScore=0.4828;MLEAC=3;MLEAF=0.375;MQ=31.59;MQ0=0;MQRankSum=-0.865;QD=12.41;ReadPosRankSum=-0.539;SB=-3.790e+02 GT:AD:DP:GQ:PL 0/0:21,0:21:51:0,51,600 0/1:7,13:20:99:378,0,147 0/1:10,11:21:99:329,0,292 0/1:14,3:17:56:56,0,320 +chr1 22838340 . C A 36.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.910;DP=156;Dels=0.00;FS=24.188;HaplotypeScore=6.5943;MLEAC=3;MLEAF=0.375;MQ=29.32;MQ0=0;MQRankSum=-0.029;QD=0.31;ReadPosRankSum=-1.766;SB=-5.111e-01 GT:AD:DP:GQ:PL 0/1:27,2:29:4:4,0,588 0/1:44,3:47:12:12,0,677 0/1:36,4:40:61:61,0,491 0/0:37,3:40:30:0,30,755 +chr1 22902772 rs56218493 C T 2109.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.693;DB;DP=218;Dels=0.00;FS=4.570;HaplotypeScore=1.6412;MLEAC=3;MLEAF=0.375;MQ=36.70;MQ0=0;MQRankSum=-1.943;QD=13.27;ReadPosRankSum=1.664;SB=-4.390e+02 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,172,2206 0/1:25,30:55:99:959,0,643 0/1:32,21:53:99:674,0,1033 0/1:33,18:51:99:520,0,868 +chr1 23219344 rs2746331 A G 200.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.447;DB;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=1.7295;MLEAC=1;MLEAF=0.125;MQ=34.40;MQ0=0;MQRankSum=-2.370;QD=5.74;ReadPosRankSum=1.616;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:25,10:35:99:237,0,787 0/0:54,0:54:99:0,159,1938 0/0:50,0:50:99:0,144,1770 0/0:54,0:54:99:0,156,1916 +chr1 23221886 . G A 65.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.437;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.9369;MLEAC=3;MLEAF=0.375;MQ=27.63;MQ0=0;MQRankSum=0.557;QD=1.19;ReadPosRankSum=-0.255;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,2:19:14:14,0,287 0/1:18,3:21:26:26,0,234 0/0:19,1:20:15:0,15,360 0/1:12,3:15:68:68,0,133 +chr1 23232400 rs309502 C T 373.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.794;DB;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.0812;MLEAC=3;MLEAF=0.375;MQ=29.89;MQ0=0;MQRankSum=1.351;QD=8.13;ReadPosRankSum=-3.608;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,1:13:24:0,24,301 0/1:9,2:11:50:50,0,239 0/1:12,5:17:99:153,0,285 0/1:11,7:18:99:214,0,106 +chr1 23236826 rs309497 C T 359.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.993;DB;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=10.0112;MLEAC=4;MLEAF=0.500;MQ=25.61;MQ0=0;MQRankSum=1.503;QD=6.20;ReadPosRankSum=-2.057;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,4:16:97:97,0,222 0/1:5,4:9:88:106,0,88 0/1:18,6:24:99:135,0,322 0/1:7,2:9:64:64,0,68 +chr1 23408938 . T A 79.67 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.652;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=4.9895;MLEAC=6;MLEAF=1.00;MQ=17.62;MQ0=0;MQRankSum=1.652;QD=4.98;ReadPosRankSum=-0.361;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,1:4:3:30,3,0 ./. 1/1:4,1:5:3:31,3,0 1/1:4,3:7:6:54,6,0 +chr1 23420708 . A C 234.82 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.727;DP=190;Dels=0.02;FS=100.150;HaplotypeScore=13.8157;MLEAC=4;MLEAF=0.500;MQ=34.83;MQ0=0;MQRankSum=1.243;QD=1.24;ReadPosRankSum=0.160;SB=-2.483e-01 GT:AD:DP:GQ:PL 0/1:44,7:52:99:155,0,919 0/1:37,4:41:13:13,0,638 0/1:45,6:52:91:91,0,947 0/1:39,3:42:18:18,0,953 +chr1 24083465 . A G 50.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.638;DP=376;Dels=0.00;FS=140.988;HaplotypeScore=11.7964;MLEAC=2;MLEAF=0.250;MQ=37.50;MQ0=0;MQRankSum=-3.953;QD=0.27;ReadPosRankSum=-1.991;SB=-1.437e+00 GT:AD:DP:GQ:PL 0/0:98,7:105:63:0,63,3030 0/0:85,3:88:99:0,105,2565 0/1:88,10:98:76:76,0,2759 0/1:76,9:85:15:15,0,2096 +chr1 24137112 . G C 82.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.372;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.6533;MLEAC=3;MLEAF=0.375;MQ=24.96;MQ0=0;MQRankSum=-0.568;QD=3.74;ReadPosRankSum=1.637;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:43:43,0,107 0/1:6,1:7:17:17,0,35 0/1:5,3:8:22:65,0,22 0/0:7,0:7:12:0,12,125 +chr1 24228359 rs4649136 A G 43.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.644;DB;DP=82;Dels=0.00;FS=41.385;HaplotypeScore=1.7023;MLEAC=4;MLEAF=1.00;MQ=10.32;MQ0=0;MQRankSum=-1.022;QD=0.93;ReadPosRankSum=1.377;SB=-3.500e+01 GT:AD:DP:GQ:PL 1/1:5,21:26:3:38,3,0 ./. 1/1:3,17:20:3:38,3,0 ./. +chr1 24229237 . C A 40.07 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.537;DP=15;Dels=0.00;FS=3.332;HaplotypeScore=2.8894;MLEAC=3;MLEAF=0.750;MQ=14.57;MQ0=0;MQRankSum=1.537;QD=4.45;ReadPosRankSum=-0.406;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:2,1:3:19:26,0,19 1/1:4,2:6:6:50,6,0 ./. +chr1 24408431 . T A 36.41 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.602;DP=41;Dels=0.02;FS=2.016;HaplotypeScore=8.9729;MLEAC=3;MLEAF=0.500;MQ=17.70;MQ0=0;MQRankSum=0.417;QD=1.14;ReadPosRankSum=1.250;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:38:38,0,63 0/1:13,1:14:16:16,0,48 0/1:6,2:8:21:21,0,36 ./. +chr1 24421474 rs6678540 G A 1217.88 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.549;DB;DP=43;Dels=0.00;FS=7.667;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=36.91;MQ0=0;MQRankSum=2.232;QD=28.32;ReadPosRankSum=1.208;SB=-7.510e+01 GT:AD:DP:GQ:PL 1/1:3,7:10:1:259,1,0 1/1:2,8:10:24:331,24,0 1/1:1,9:10:27:373,27,0 1/1:5,8:13:24:293,24,0 +chr1 24424241 rs3885698 T C 126.35 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.339;DB;DP=18;Dels=0.00;FS=15.911;HaplotypeScore=1.6294;MLEAC=6;MLEAF=1.00;MQ=17.45;MQ0=0;MQRankSum=2.654;QD=8.42;ReadPosRankSum=0.201;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,3:6:9:105,9,0 1/1:3,2:5:3:27,3,0 1/1:2,2:4:3:30,3,0 ./. +chr1 24432365 . T G 55.36 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.012;DP=84;Dels=0.01;FS=103.052;HaplotypeScore=7.5995;MLEAC=2;MLEAF=0.250;MQ=34.52;MQ0=0;MQRankSum=-4.234;QD=1.23;ReadPosRankSum=-0.232;SB=-1.373e-01 GT:AD:DP:GQ:PL 0/1:14,2:16:10:10,0,458 0/0:20,3:23:11:0,11,657 0/1:22,6:28:85:85,0,616 0/0:15,1:16:9:0,9,395 +chr1 24469534 . C T 45.15 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.331;DP=37;Dels=0.00;FS=22.658;HaplotypeScore=2.5532;MLEAC=3;MLEAF=0.375;MQ=34.80;MQ0=0;MQRankSum=-1.180;QD=1.61;ReadPosRankSum=-0.527;SB=0.795 GT:AD:DP:GQ:PL 0/1:4,1:5:24:24,0,77 0/1:12,2:15:39:39,0,344 0/1:7,1:8:25:25,0,182 0/0:8,1:9:12:0,12,148 +chr1 25611035 rs2301153 G C 66.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.292;DB;DP=47;Dels=0.04;FS=28.921;HaplotypeScore=0.6073;MLEAC=6;MLEAF=1.00;MQ=8.77;MQ0=0;MQRankSum=-0.281;QD=1.84;ReadPosRankSum=0.362;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,8:11:3:32,3,0 1/1:1,12:13:3:39,3,0 ./. 1/1:1,9:10:3:30,3,0 +chr1 26153107 . A C 547.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.581;DP=230;Dels=0.00;FS=179.486;HaplotypeScore=1.2332;MLEAC=3;MLEAF=0.375;MQ=37.29;MQ0=0;MQRankSum=-4.456;QD=3.09;ReadPosRankSum=-0.875;SB=0.767 GT:AD:DP:GQ:PL 0/1:46,13:59:99:259,0,1406 0/0:50,3:53:26:0,26,1359 0/1:54,10:64:99:181,0,1636 0/1:44,10:54:99:151,0,1372 +chr1 26361663 . G C 154.64 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.015;DP=52;Dels=0.00;FS=46.481;HaplotypeScore=6.6436;MLEAC=5;MLEAF=0.625;MQ=21.76;MQ0=0;MQRankSum=2.117;QD=2.97;ReadPosRankSum=-1.091;SB=-5.599e-02 GT:AD:DP:GQ:PL 1/1:6,3:9:3:36,3,0 0/1:17,2:19:18:18,0,200 0/1:12,3:15:73:73,0,135 0/1:5,4:9:24:70,0,24 +chr1 26383822 . C G 42.92 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.168;DP=68;Dels=0.00;FS=27.191;HaplotypeScore=6.5194;MLEAC=4;MLEAF=0.500;MQ=18.49;MQ0=0;MQRankSum=-1.209;QD=0.63;ReadPosRankSum=-0.775;SB=-2.584e-01 GT:AD:DP:GQ:PL 0/1:13,2:15:11:11,0,93 0/1:11,4:15:19:19,0,84 0/1:16,6:22:27:27,0,181 0/1:13,3:16:28:28,0,89 +chr1 26448849 rs17356867 T C 774.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.763;DB;DP=115;Dels=0.01;FS=31.382;HaplotypeScore=3.6926;MLEAC=3;MLEAF=0.375;MQ=28.06;MQ0=0;MQRankSum=1.007;QD=9.01;ReadPosRankSum=-0.046;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/0:29,0:29:81:0,81,881 0/1:23,13:38:99:284,0,427 0/1:18,12:30:99:335,0,416 0/1:7,8:17:99:199,0,109 +chr1 26514700 . T C 33.44 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.123;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.3640;MLEAC=4;MLEAF=0.500;MQ=27.56;MQ0=0;MQRankSum=-1.277;QD=0.60;ReadPosRankSum=-1.277;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,1:10:8:8,0,120 0/1:12,2:14:27:27,0,221 0/1:11,2:13:11:11,0,183 0/1:16,3:19:29:29,0,156 +chr1 26527953 . C T 68.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.131;DP=140;Dels=0.00;FS=34.358;HaplotypeScore=9.2381;MLEAC=2;MLEAF=0.250;MQ=31.88;MQ0=0;MQRankSum=-0.303;QD=1.12;ReadPosRankSum=-0.155;SB=2.17 GT:AD:DP:GQ:PL 0/1:26,3:29:68:68,0,356 0/0:32,1:33:44:0,44,698 0/0:44,2:46:74:0,74,1100 0/1:29,3:32:42:42,0,614 +chr1 26528024 . C A 63.57 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.136;DP=144;Dels=0.00;FS=2.185;HaplotypeScore=2.3819;MLEAC=3;MLEAF=0.375;MQ=33.98;MQ0=0;MQRankSum=-2.594;QD=0.63;ReadPosRankSum=-2.140;SB=0.118 GT:AD:DP:GQ:PL 0/1:26,4:30:40:40,0,605 0/1:33,3:36:9:9,0,811 0/0:41,2:43:23:0,23,813 0/1:30,5:35:57:57,0,666 +chr1 26589698 rs12142535 T A 129.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.301;DB;DP=66;Dels=0.00;FS=2.343;HaplotypeScore=1.2165;MLEAC=1;MLEAF=0.125;MQ=29.95;MQ0=0;MQRankSum=0.667;QD=5.61;ReadPosRankSum=1.555;SB=0.067 GT:AD:DP:GQ:PL 0/0:10,0:10:15:0,15,176 0/1:16,7:23:99:165,0,213 0/0:22,0:22:36:0,36,465 0/0:11,0:11:15:0,15,198 +chr1 26595131 . C T 78.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.346;DP=76;Dels=0.00;FS=36.534;HaplotypeScore=16.3347;MLEAC=3;MLEAF=0.375;MQ=29.14;MQ0=0;MQRankSum=-1.983;QD=1.32;ReadPosRankSum=-1.621;SB=0.853 GT:AD:DP:GQ:PL 0/1:13,2:15:29:29,0,243 0/1:16,2:18:14:14,0,297 0/1:21,5:26:78:78,0,396 0/0:17,0:17:18:0,18,211 +chr1 26620573 . T C 489.89 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.737;DP=43;Dels=0.05;FS=0.000;HaplotypeScore=7.6634;MLEAC=5;MLEAF=0.625;MQ=22.13;MQ0=0;MQRankSum=2.665;QD=11.39;ReadPosRankSum=-0.321;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,8:10:4:199,4,0 0/1:4,5:9:29:98,0,29 0/1:5,4:9:16:96,0,16 0/1:6,7:13:6:139,0,6 +chr1 26646726 rs1071849 A G 2344.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.611;DB;DP=109;Dels=0.00;FS=6.142;HaplotypeScore=5.2722;MLEAC=7;MLEAF=0.875;MQ=29.18;MQ0=0;MQRankSum=1.338;QD=21.51;ReadPosRankSum=2.944;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:4,15:19:45:504,45,0 0/1:22,9:31:99:223,0,485 1/1:4,27:31:81:935,81,0 1/1:5,23:28:46:727,46,0 +chr1 26648551 rs11247913 G C 302.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.998;DB;DP=78;Dels=0.01;FS=8.087;HaplotypeScore=17.1187;MLEAC=4;MLEAF=0.500;MQ=22.70;MQ0=0;MQRankSum=1.101;QD=3.88;ReadPosRankSum=1.862;SB=-4.188e+01 GT:AD:DP:GQ:PL 0/1:12,4:16:49:52,0,49 0/1:23,2:25:32:32,0,138 0/1:14,10:24:11:177,0,11 0/1:6,6:12:13:84,0,13 +chr1 26793726 . G T 87.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.393;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9739;MLEAC=3;MLEAF=0.375;MQ=36.29;MQ0=0;MQRankSum=-1.387;QD=1.20;ReadPosRankSum=-1.483;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,4:26:74:74,0,694 0/1:26,2:28:17:17,0,606 0/0:27,0:27:39:0,39,459 0/1:17,2:19:40:40,0,366 +chr1 26881565 rs111711611 AG A 249.96 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.647;DB;DP=33;FS=0.000;HaplotypeScore=5.8521;MLEAC=2;MLEAF=0.250;MQ=27.21;MQ0=0;MQRankSum=1.024;QD=12.50;RPA=4,3;RU=G;ReadPosRankSum=2.048;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:7,0:6:15:0,15,197 0/0:6,0:3:9:0,9,118 0/1:4,5:8:94:172,0,94 0/1:7,4:11:99:128,0,203 +chr1 26887140 . C T 181.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.065;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8842;MLEAC=3;MLEAF=0.375;MQ=25.74;MQ0=0;MQRankSum=1.177;QD=3.08;ReadPosRankSum=-1.975;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:18:0,18,206 0/1:15,3:18:67:67,0,156 0/1:21,4:25:66:66,0,241 0/1:12,4:16:92:92,0,187 +chr1 26900708 rs2229714 G A 155.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.841;DB;DP=59;Dels=0.02;FS=1.553;HaplotypeScore=2.7023;MLEAC=1;MLEAF=0.125;MQ=30.53;MQ0=0;MQRankSum=-2.038;QD=11.93;ReadPosRankSum=0.161;SB=-5.453e+01 GT:AD:DP:GQ:PL 0/0:10,0:10:21:0,21,260 0/1:6,7:13:81:191,0,81 0/0:18,0:18:45:0,45,500 0/0:15,2:17:17:0,17,412 +chr1 27087542 . G C 118.78 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.003;DP=165;Dels=0.01;FS=28.878;HaplotypeScore=5.4377;MLEAC=4;MLEAF=0.500;MQ=31.17;MQ0=0;MQRankSum=-0.147;QD=0.72;ReadPosRankSum=-0.226;SB=-2.118e-01 GT:AD:DP:GQ:PL 0/1:25,5:30:97:97,0,602 0/1:37,3:40:24:24,0,767 0/1:43,5:48:27:27,0,1059 0/1:42,3:45:13:13,0,835 +chr1 27106106 rs41303631 G A 1233.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.053;DB;DP=253;Dels=0.00;FS=4.817;HaplotypeScore=2.5693;MLEAC=3;MLEAF=0.375;MQ=35.45;MQ0=0;MQRankSum=-5.816;QD=6.46;ReadPosRankSum=0.800;SB=-4.410e+02 GT:AD:DP:GQ:PL 0/1:40,23:63:99:497,0,1239 0/0:62,0:62:99:0,171,2212 0/1:46,17:63:99:390,0,1344 0/1:44,20:64:99:390,0,1314 +chr1 27106589 . T A 58.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.526;DP=172;Dels=0.01;FS=93.784;HaplotypeScore=12.7160;MLEAC=2;MLEAF=0.250;MQ=32.05;MQ0=0;MQRankSum=-2.974;QD=0.70;ReadPosRankSum=2.606;SB=-4.952e-02 GT:AD:DP:GQ:PL 0/1:38,6:44:49:49,0,823 0/1:35,5:40:51:51,0,727 0/0:42,1:44:54:0,54,907 0/0:40,3:43:43:0,43,797 +chr1 27107113 . G A 40.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.031;DP=67;Dels=0.01;FS=26.904;HaplotypeScore=10.8645;MLEAC=3;MLEAF=0.375;MQ=19.10;MQ0=0;MQRankSum=-0.307;QD=0.80;ReadPosRankSum=0.981;SB=0.084 GT:AD:DP:GQ:PL 0/0:16,1:17:24:0,24,212 0/1:12,4:17:29:29,0,115 0/1:16,1:17:13:13,0,99 0/1:11,3:15:41:41,0,46 +chr1 27124230 . T C 62.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.178;DP=131;Dels=0.00;FS=118.538;HaplotypeScore=9.7299;MLEAC=1;MLEAF=0.125;MQ=33.43;MQ0=0;MQRankSum=-5.140;QD=2.14;ReadPosRankSum=-0.380;SB=-9.201e+00 GT:AD:DP:GQ:PL 0/0:33,3:36:18:0,18,988 0/0:29,4:33:13:0,13,764 0/0:28,5:33:47:0,47,876 0/1:22,7:29:98:98,0,491 +chr1 27180364 . C G 48.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.647;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1873;MLEAC=3;MLEAF=0.375;MQ=27.85;MQ0=0;MQRankSum=1.009;QD=0.57;ReadPosRankSum=-2.200;SB=-3.531e-01 GT:AD:DP:GQ:PL 0/1:29,3:32:61:61,0,270 0/0:27,0:27:36:0,36,402 0/1:28,2:30:10:10,0,385 0/1:21,2:23:20:20,0,257 +chr1 27224015 . T A 152.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.608;DP=150;Dels=0.00;FS=16.592;HaplotypeScore=9.7126;MLEAC=4;MLEAF=0.500;MQ=33.17;MQ0=0;MQRankSum=-0.872;QD=1.02;ReadPosRankSum=-1.725;SB=-1.236e+00 GT:AD:DP:GQ:PL 0/1:26,5:31:89:89,0,447 0/1:37,3:40:4:4,0,767 0/1:44,6:50:69:69,0,960 0/1:25,4:29:32:32,0,418 +chr1 27238270 . G A 365.11 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.748;DP=58;Dels=0.00;FS=16.148;HaplotypeScore=5.1931;MLEAC=5;MLEAF=0.625;MQ=22.64;MQ0=0;MQRankSum=3.194;QD=6.29;ReadPosRankSum=2.134;SB=1.16 GT:AD:DP:GQ:PL 0/1:7,4:11:72:110,0,72 1/1:10,5:15:12:121,12,0 0/1:14,2:16:45:45,0,99 0/1:9,7:16:22:134,0,22 +chr1 27276452 . G A 33.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.850;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7475;MLEAC=3;MLEAF=0.375;MQ=30.87;MQ0=0;MQRankSum=-1.273;QD=1.99;ReadPosRankSum=2.122;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:14:14,0,65 0/1:6,1:7:16:16,0,144 0/0:4,0:4:9:0,9,104 0/1:2,2:5:30:46,0,30 +chr1 27332935 . G A 86.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.839;DP=56;Dels=0.00;FS=20.908;HaplotypeScore=1.8980;MLEAC=2;MLEAF=0.250;MQ=29.47;MQ0=0;MQRankSum=-1.794;QD=3.21;ReadPosRankSum=-0.736;SB=-1.750e-01 GT:AD:DP:GQ:PL 0/0:15,2:17:18:0,18,478 0/0:12,0:12:12:0,12,131 0/1:13,3:16:71:71,0,162 0/1:7,4:11:57:57,0,187 +chr1 27428197 rs76797378 A G 63.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.096;DB;DP=39;Dels=0.03;FS=2.538;HaplotypeScore=2.4348;MLEAC=4;MLEAF=0.500;MQ=26.13;MQ0=0;MQRankSum=-1.096;QD=1.63;ReadPosRankSum=-0.892;SB=-4.756e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:17:17,0,73 0/1:6,1:7:22:22,0,62 0/1:9,3:12:30:30,0,222 0/1:10,2:12:37:37,0,69 +chr1 27436141 . A C 32.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.302;DP=217;Dels=0.02;FS=13.772;HaplotypeScore=2.6922;MLEAC=2;MLEAF=0.250;MQ=34.72;MQ0=0;MQRankSum=-5.038;QD=0.30;ReadPosRankSum=-2.363;SB=-1.553e+00 GT:AD:DP:GQ:PL 0/0:37,1:38:62:0,62,1037 0/1:47,6:53:46:46,0,1276 0/0:62,5:67:24:0,24,1637 0/1:49,6:55:28:28,0,1069 +chr1 27660340 rs12758154 T C 96.42 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.580;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.8675;MLEAC=5;MLEAF=0.625;MQ=30.29;MQ0=0;MQRankSum=-0.158;QD=5.67;ReadPosRankSum=-0.158;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:20:20,0,143 1/1:0,2:2:6:78,6,0 0/1:3,1:4:24:24,0,103 0/1:4,1:5:18:18,0,32 +chr1 27679885 . T G 95.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.837;DP=30;Dels=0.00;FS=8.671;HaplotypeScore=1.8513;MLEAC=3;MLEAF=0.375;MQ=31.13;MQ0=0;MQRankSum=-0.904;QD=4.13;ReadPosRankSum=-1.662;SB=0.936 GT:AD:DP:GQ:PL 0/1:6,3:9:74:74,0,147 0/0:7,0:7:15:0,15,171 0/1:4,1:5:20:20,0,104 0/1:7,2:9:44:44,0,93 +chr1 27687747 . G C 42.41 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.318;DP=57;Dels=0.00;FS=10.439;HaplotypeScore=0.9740;MLEAC=2;MLEAF=0.250;MQ=31.59;MQ0=0;MQRankSum=-2.137;QD=1.77;ReadPosRankSum=-1.082;SB=-1.520e+00 GT:AD:DP:GQ:PL 0/0:12,1:13:1:0,1,338 0/1:12,2:14:32:32,0,234 0/0:19,1:20:28:0,28,519 0/1:7,3:10:50:50,0,219 +chr1 27721017 . T A 81.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.179;DP=93;Dels=0.01;FS=35.292;HaplotypeScore=3.2566;MLEAC=4;MLEAF=0.500;MQ=22.83;MQ0=0;MQRankSum=-1.356;QD=0.88;ReadPosRankSum=0.918;SB=-9.868e-01 GT:AD:DP:GQ:PL 0/1:22,3:25:6:6,0,417 0/1:21,5:26:66:66,0,191 0/1:19,2:21:12:12,0,216 0/1:14,6:20:39:39,0,96 +chr1 27741512 . T A 32.52 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.017;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1810;MLEAC=4;MLEAF=0.500;MQ=30.98;MQ0=0;MQRankSum=0.301;QD=0.49;ReadPosRankSum=-1.847;SB=-6.240e-01 GT:AD:DP:GQ:PL 0/1:13,1:14:17:17,0,218 0/1:21,2:23:23:23,0,385 0/1:20,2:22:6:6,0,339 0/1:7,1:8:27:28,0,27 +chr1 27876150 . G A 35.59 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.710;DP=123;Dels=0.00;FS=31.792;HaplotypeScore=4.5323;MLEAC=1;MLEAF=0.125;MQ=30.57;MQ0=0;MQRankSum=0.188;QD=1.87;ReadPosRankSum=0.419;SB=-7.322e+00 GT:AD:DP:GQ:PL 0/0:28,1:29:19:0,19,438 0/1:15,4:19:71:71,0,215 0/0:42,0:42:99:0,99,1133 0/0:31,2:33:3:0,3,623 +chr1 28087048 . A C 44.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.808;DP=89;Dels=0.04;FS=26.849;HaplotypeScore=1.6561;MLEAC=3;MLEAF=0.375;MQ=33.01;MQ0=0;MQRankSum=-0.066;QD=0.69;ReadPosRankSum=-3.157;SB=-9.032e-01 GT:AD:DP:GQ:PL 0/1:22,2:25:32:32,0,430 0/1:23,4:27:47:47,0,602 0/0:22,0:22:48:0,48,611 0/1:10,1:11:8:8,0,213 +chr1 28146223 . C G 46.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.246;DP=111;Dels=0.02;FS=7.190;HaplotypeScore=1.9715;MLEAC=2;MLEAF=0.250;MQ=38.20;MQ0=0;MQRankSum=-1.351;QD=0.90;ReadPosRankSum=0.791;SB=-8.675e-03 GT:AD:DP:GQ:PL 0/1:26,3:29:45:45,0,665 0/1:18,3:21:43:43,0,282 0/0:31,1:32:42:0,42,807 0/0:27,0:27:51:0,51,648 +chr1 28202978 . T G 223.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.661;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.7023;MLEAC=4;MLEAF=0.500;MQ=27.94;MQ0=0;MQRankSum=0.526;QD=3.19;ReadPosRankSum=0.505;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,1:14:9:9,0,233 0/1:11,3:14:64:64,0,147 0/1:18,4:22:59:59,0,326 0/1:13,6:20:99:133,0,154 +chr1 28206522 . C G 99.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.671;DP=56;Dels=0.00;FS=28.685;HaplotypeScore=1.5681;MLEAC=2;MLEAF=0.250;MQ=31.65;MQ0=0;MQRankSum=0.843;QD=3.68;ReadPosRankSum=0.271;SB=-2.654e+00 GT:AD:DP:GQ:PL 0/0:14,1:15:6:0,6,373 0/1:12,2:14:41:41,0,271 0/0:14,0:14:30:0,30,333 0/1:9,4:13:99:99,0,167 +chr1 28818187 . A G 332.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.350;DP=214;Dels=0.00;FS=183.383;HaplotypeScore=3.4410;MLEAC=3;MLEAF=0.375;MQ=39.22;MQ0=0;MQRankSum=-4.789;QD=2.12;ReadPosRankSum=-0.030;SB=0.722 GT:AD:DP:GQ:PL 0/1:39,4:43:23:23,0,1083 0/0:53,4:57:23:0,23,1559 0/1:48,10:58:99:178,0,1520 0/1:44,12:56:99:175,0,1276 +chr1 28861536 . A T 86.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.713;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.2656;MLEAC=2;MLEAF=0.250;MQ=23.60;MQ0=0;MQRankSum=-1.662;QD=2.11;ReadPosRankSum=0.420;SB=-6.073e-03 GT:AD:DP:GQ:PL 0/0:15,0:15:27:0,27,286 0/1:12,5:17:65:65,0,192 0/1:18,6:24:63:63,0,314 0/0:16,0:16:24:0,24,278 +chr1 29345027 rs2985334 T G 1289.14 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.784;DB;DP=64;Dels=0.00;FS=24.579;HaplotypeScore=2.8783;MLEAC=8;MLEAF=1.00;MQ=30.03;MQ0=0;MQRankSum=2.833;QD=20.14;ReadPosRankSum=1.465;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,10:18:30:365,30,0 1/1:8,13:21:33:386,33,0 1/1:5,13:18:39:471,39,0 1/1:4,3:7:9:106,9,0 +chr1 29641865 rs35918836 G A 80.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.047;DB;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8913;MLEAC=1;MLEAF=0.125;MQ=34.36;MQ0=0;MQRankSum=-1.149;QD=4.05;ReadPosRankSum=-0.551;SB=-1.166e-02 GT:AD:DP:GQ:PL 0/1:15,5:20:99:117,0,498 0/0:16,0:16:39:0,39,492 0/0:23,0:23:60:0,60,750 0/0:27,0:27:75:0,75,929 +chr1 29647333 . C T 385.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.878;DP=87;Dels=0.01;FS=103.481;HaplotypeScore=11.2458;MLEAC=4;MLEAF=0.500;MQ=25.03;MQ0=0;MQRankSum=2.402;QD=4.43;ReadPosRankSum=0.149;SB=-2.383e+00 GT:AD:DP:GQ:PL 0/1:12,1:13:5:5,0,149 0/1:17,3:22:76:76,0,200 0/1:23,7:31:99:183,0,177 0/1:11,8:20:99:163,0,178 +chr1 31188721 . C T 32.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.823;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5887;MLEAC=2;MLEAF=0.250;MQ=29.26;MQ0=0;MQRankSum=0.788;QD=1.16;ReadPosRankSum=-1.524;SB=-9.538e-03 GT:AD:DP:GQ:PL 0/0:14,0:14:24:0,24,292 0/1:12,2:14:33:33,0,205 0/0:15,0:15:30:0,30,336 0/1:12,2:14:41:41,0,266 +chr1 31437452 . G C 125.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.055;DP=144;Dels=0.00;FS=2.316;HaplotypeScore=8.2875;MLEAC=4;MLEAF=0.500;MQ=32.44;MQ0=0;MQRankSum=-3.664;QD=0.87;ReadPosRankSum=4.445;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,5:40:51:51,0,700 0/1:35,5:42:34:34,0,713 0/1:36,5:42:68:68,0,666 0/1:18,2:20:15:15,0,422 +chr1 31440187 . A G 56.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.375;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.6493;MLEAC=2;MLEAF=0.250;MQ=34.73;MQ0=0;MQRankSum=-1.079;QD=1.11;ReadPosRankSum=-0.872;SB=-6.132e-01 GT:AD:DP:GQ:PL 0/0:20,0:20:54:0,54,701 0/1:26,2:28:10:10,0,570 0/0:35,0:35:81:0,81,932 0/1:19,4:23:87:87,0,393 +chr1 31736424 . A G 64.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.903;DP=68;Dels=0.00;FS=5.043;HaplotypeScore=0.9446;MLEAC=2;MLEAF=0.250;MQ=23.07;MQ0=0;MQRankSum=-2.417;QD=1.33;ReadPosRankSum=1.900;SB=-8.114e-01 GT:AD:DP:GQ:PL 0/0:16,0:16:36:0,36,394 0/1:14,6:20:95:95,0,166 0/1:17,11:28:8:8,0,256 0/0:4,0:4:6:0,6,44 +chr1 31761989 rs1532859 G A 797.05 . AC=8;AF=1.00;AN=8;DB;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=0.2416;MLEAC=8;MLEAF=1.00;MQ=27.65;MQ0=0;QD=27.48;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,6:6:18:179,18,0 1/1:0,5:5:15:176,15,0 1/1:0,8:9:21:242,21,0 1/1:0,8:8:24:239,24,0 +chr1 31769630 . GAC G 47.98 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.388;DP=32;FS=4.260;HaplotypeScore=32.6743;MLEAC=2;MLEAF=0.250;MQ=19.89;MQ0=0;MQRankSum=-1.653;QD=3.00;ReadPosRankSum=1.653;SB=0.554 GT:AD:DP:GQ:PL 0/0:6,0:4:7:0,7,71 0/1:7,2:5:22:70,0,22 0/0:5,2:6:5:0,5,65 0/1:4,1:4:27:27,0,74 +chr1 32090672 . T C 338.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.186;DP=73;Dels=0.00;FS=11.355;HaplotypeScore=7.3249;MLEAC=4;MLEAF=0.500;MQ=27.71;MQ0=0;MQRankSum=-0.354;QD=4.64;ReadPosRankSum=0.970;SB=-2.509e+00 GT:AD:DP:GQ:PL 0/1:16,7:23:99:111,0,175 0/1:12,4:16:29:111,0,29 0/1:12,4:16:57:57,0,127 0/1:12,6:18:99:102,0,138 +chr1 32158341 . G T 43.43 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.536;DP=99;Dels=0.01;FS=37.197;HaplotypeScore=0.8507;MLEAC=3;MLEAF=0.375;MQ=32.43;MQ0=0;MQRankSum=-1.827;QD=0.54;ReadPosRankSum=0.793;SB=-1.857e+00 GT:AD:DP:GQ:PL 0/1:27,2:29:6:6,0,523 0/1:17,4:21:47:47,0,394 0/1:25,4:29:31:31,0,578 0/0:18,1:19:5:0,5,433 +chr1 32158659 . A C 55.47 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.685;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.8971;MLEAC=2;MLEAF=0.250;MQ=25.57;MQ0=0;MQRankSum=-0.685;QD=3.08;ReadPosRankSum=-3.095;SB=0.011 GT:AD:DP:GQ:PL 0/0:6,0:6:9:0,9,87 0/1:9,2:11:14:14,0,155 0/1:3,4:7:67:82,0,67 0/0:10,1:11:21:0,21,199 +chr1 32279941 . C A 89.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.141;DP=27;Dels=0.00;FS=5.518;HaplotypeScore=1.0138;MLEAC=3;MLEAF=0.375;MQ=26.46;MQ0=0;MQRankSum=1.362;QD=4.50;ReadPosRankSum=-1.207;SB=-1.172e-02 GT:AD:DP:GQ:PL 0/1:3,1:4:28:28,0,57 0/1:4,3:8:49:49,0,77 0/1:6,2:8:55:55,0,117 0/0:7,0:7:6:0,6,50 +chr1 32280430 . C G 810.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.317;DP=214;Dels=0.01;FS=239.933;HaplotypeScore=11.5172;MLEAC=4;MLEAF=0.500;MQ=30.79;MQ0=0;MQRankSum=-5.754;QD=3.79;ReadPosRankSum=1.729;SB=-6.368e-03 GT:AD:DP:GQ:PL 0/1:36,13:49:99:231,0,959 0/1:41,8:49:84:84,0,952 0/1:46,19:65:99:411,0,1091 0/1:41,8:49:99:127,0,893 +chr1 32687559 . T G 55.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.203;DP=76;Dels=0.00;FS=16.166;HaplotypeScore=4.7454;MLEAC=2;MLEAF=0.250;MQ=22.69;MQ0=0;MQRankSum=-4.432;QD=1.43;ReadPosRankSum=3.787;SB=0.022 GT:AD:DP:GQ:PL 0/1:7,7:14:64:64,0,146 0/0:18,1:19:21:0,21,230 0/1:18,7:25:33:33,0,293 0/0:13,5:18:27:0,27,261 +chr1 32841945 . C T 132.90 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.374;DP=178;Dels=0.01;FS=94.499;HaplotypeScore=5.2874;MLEAC=4;MLEAF=0.500;MQ=30.00;MQ0=0;MQRankSum=-4.444;QD=0.75;ReadPosRankSum=1.603;SB=-1.329e+00 GT:AD:DP:GQ:PL 0/1:35,8:43:99:124,0,842 0/1:40,6:46:6:6,0,954 0/1:34,6:40:9:9,0,768 0/1:41,6:48:35:35,0,735 +chr1 33060834 rs11327743 AT A 479.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.769;DB;DP=127;FS=0.000;HaplotypeScore=25.6340;MLEAC=3;MLEAF=0.375;MQ=30.34;MQ0=0;MQRankSum=-2.141;QD=5.33;RPA=8,7;RU=T;ReadPosRankSum=0.717;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:23,9:31:99:271,0,289 0/0:37,0:34:72:0,72,776 0/1:29,6:33:99:133,0,480 0/1:15,6:16:99:128,0,207 +chr1 33138516 rs607202 A C 2186.17 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.517;DB;DP=89;Dels=0.00;FS=11.563;HaplotypeScore=0.9697;MLEAC=7;MLEAF=0.875;MQ=30.48;MQ0=0;MQRankSum=0.805;QD=24.56;ReadPosRankSum=2.246;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,27:30:16:735,16,0 1/1:2,20:22:51:629,51,0 1/1:2,24:26:54:667,54,0 0/1:2,9:11:14:199,0,14 +chr1 33376657 . T G 238.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.908;DP=197;Dels=0.01;FS=18.059;HaplotypeScore=1.7284;MLEAC=2;MLEAF=0.250;MQ=38.34;MQ0=0;MQRankSum=-1.835;QD=3.18;ReadPosRankSum=2.371;SB=-4.508e-01 GT:AD:DP:GQ:PL 0/1:39,9:48:99:191,0,991 0/0:56,5:61:10:0,10,1538 0/0:57,4:61:23:0,23,1646 0/1:21,5:26:89:89,0,474 +chr1 33560208 . C T 37.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.272;DP=177;Dels=0.00;FS=72.891;HaplotypeScore=11.7726;MLEAC=3;MLEAF=0.375;MQ=33.14;MQ0=0;MQRankSum=-0.743;QD=0.28;ReadPosRankSum=1.087;SB=-4.875e-02 GT:AD:DP:GQ:PL 0/0:40,4:44:11:0,11,1036 0/1:31,4:35:47:47,0,766 0/1:47,4:51:12:12,0,1180 0/1:43,4:47:21:21,0,801 +chr1 33562518 . G C 201.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.073;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=3.8440;MLEAC=3;MLEAF=0.375;MQ=32.54;MQ0=0;MQRankSum=-0.581;QD=3.15;ReadPosRankSum=0.121;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:33:0,33,343 0/1:14,4:18:91:91,0,169 0/1:19,2:22:44:44,0,123 0/1:18,5:23:99:110,0,149 +chr1 34066632 . C A 86.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.684;DP=142;Dels=0.00;FS=2.244;HaplotypeScore=6.8358;MLEAC=2;MLEAF=0.250;MQ=37.48;MQ0=0;MQRankSum=-4.470;QD=1.17;ReadPosRankSum=-1.635;SB=-1.203e-02 GT:AD:DP:GQ:PL 0/0:33,1:34:69:0,69,906 0/1:36,6:42:83:83,0,964 0/0:33,1:34:51:0,51,1036 0/1:27,4:32:45:45,0,784 +chr1 34166365 . T G 417.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.253;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.3508;MLEAC=4;MLEAF=0.500;MQ=28.82;MQ0=0;MQRankSum=2.523;QD=4.53;ReadPosRankSum=2.370;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,6:26:99:117,0,154 0/1:20,7:27:90:153,0,90 0/1:15,2:17:38:38,0,111 0/1:14,7:22:5:151,0,5 +chr1 34667863 rs12746310 C A 168.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.057;DB;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=7.4653;MLEAC=1;MLEAF=0.125;MQ=33.30;MQ0=0;MQRankSum=0.710;QD=6.04;ReadPosRankSum=0.089;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:20,8:28:99:205,0,509 0/0:32,0:33:75:0,75,906 0/0:42,0:42:99:0,102,1234 0/0:27,0:28:54:0,54,647 +chr1 35259150 rs1629527 A G 36.25 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.231;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.2774;MLEAC=4;MLEAF=0.667;MQ=26.43;MQ0=0;MQRankSum=1.231;QD=12.08;ReadPosRankSum=-1.231;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:35,3,0 0/0:2,0:2:3:0,3,32 1/1:1,1:2:3:39,3,0 ./. +chr1 36030897 . T C 90.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.344;DP=125;Dels=0.00;FS=21.147;HaplotypeScore=1.6718;MLEAC=3;MLEAF=0.375;MQ=31.13;MQ0=0;MQRankSum=-2.637;QD=0.96;ReadPosRankSum=1.582;SB=-1.377e+00 GT:AD:DP:GQ:PL 0/1:34,5:39:61:61,0,605 0/0:30,1:31:51:0,51,577 0/1:31,3:34:6:6,0,643 0/1:16,4:21:65:65,0,172 +chr1 36479202 . G A 40.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.656;DP=165;Dels=0.00;FS=9.438;HaplotypeScore=1.3668;MLEAC=1;MLEAF=0.125;MQ=36.00;MQ0=0;MQRankSum=-2.888;QD=2.16;ReadPosRankSum=-2.712;SB=-1.176e-02 GT:AD:DP:GQ:PL 0/0:42,1:43:73:0,73,1226 0/0:47,2:49:99:0,101,1529 0/0:52,2:54:99:0,104,1492 0/1:15,4:19:77:77,0,394 +chr1 36520708 . T A 76.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.446;DP=56;Dels=0.00;FS=7.609;HaplotypeScore=2.5549;MLEAC=3;MLEAF=0.375;MQ=29.48;MQ0=0;MQRankSum=-2.149;QD=2.02;ReadPosRankSum=2.014;SB=-8.765e-01 GT:AD:DP:GQ:PL 0/0:17,1:18:3:0,3,324 0/1:11,3:14:19:19,0,241 0/1:12,3:15:65:65,0,274 0/1:7,2:9:34:34,0,123 +chr1 36552700 . C G 75.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.034;DP=99;Dels=0.01;FS=17.413;HaplotypeScore=4.7882;MLEAC=4;MLEAF=0.500;MQ=31.20;MQ0=0;MQRankSum=-3.000;QD=1.01;ReadPosRankSum=1.186;SB=-2.238e+00 GT:AD:DP:GQ:PL 0/1:25,2:27:13:13,0,562 0/0:21,3:24:1:0,1,512 0/1:20,4:24:74:74,0,451 0/1:18,5:23:29:29,0,441 +chr1 36785189 . C A 63.33 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.050;DP=29;Dels=0.00;FS=2.754;HaplotypeScore=1.3995;MLEAC=4;MLEAF=0.500;MQ=25.01;MQ0=0;MQRankSum=0.950;QD=2.53;ReadPosRankSum=-0.150;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:26:61,0,26 0/1:11,1:12:21:21,0,82 1/1:5,1:7:3:23,3,0 0/0:4,0:4:3:0,3,37 +chr1 36859655 . C T 297.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.011;DP=149;Dels=0.00;FS=47.046;HaplotypeScore=6.8466;MLEAC=3;MLEAF=0.375;MQ=32.12;MQ0=0;MQRankSum=-1.505;QD=2.66;ReadPosRankSum=-2.806;SB=-1.174e-02 GT:AD:DP:GQ:PL 0/1:25,9:35:99:198,0,725 0/1:34,5:39:69:69,0,835 0/0:37,0:37:93:0,93,1092 0/1:33,5:38:74:74,0,847 +chr1 36887702 rs2236565 C T 4105.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.545;DB;DP=161;Dels=0.00;FS=3.702;HaplotypeScore=1.6323;MLEAC=7;MLEAF=0.875;MQ=33.61;MQ0=0;MQRankSum=-4.638;QD=25.50;ReadPosRankSum=0.535;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:33,12:45:99:322,0,1071 1/1:1,34:35:70:1237,70,0 1/1:4,43:47:99:1586,129,0 1/1:7,27:34:59:960,59,0 +chr1 36888462 rs1416840 A G 806.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.282;DB;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.1796;MLEAC=3;MLEAF=0.375;MQ=34.33;MQ0=0;MQRankSum=-2.590;QD=9.84;ReadPosRankSum=0.922;SB=-3.840e+02 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,120,1531 0/1:18,22:40:99:622,0,534 0/1:29,6:35:99:135,0,847 0/1:3,4:7:64:93,0,64 +chr1 36939135 . G A 46.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.280;DP=155;Dels=0.01;FS=30.850;HaplotypeScore=5.5420;MLEAC=4;MLEAF=0.500;MQ=34.26;MQ0=0;MQRankSum=-4.552;QD=0.39;ReadPosRankSum=2.961;SB=-3.043e+00 GT:AD:DP:GQ:PL 0/1:33,4:37:31:31,0,792 0/0:31,4:35:1:0,1,834 0/1:37,4:41:7:7,0,1128 0/1:35,6:41:48:48,0,773 +chr1 37285306 . G T 47.03 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.873;DP=35;Dels=0.03;FS=9.368;HaplotypeScore=7.3707;MLEAC=2;MLEAF=0.333;MQ=25.01;MQ0=0;MQRankSum=-0.698;QD=1.74;ReadPosRankSum=0.524;SB=-1.475e-02 GT:AD:DP:GQ:PL 0/0:2,1:4:3:0,3,34 ./. 0/1:11,2:14:50:50,0,63 0/1:10,2:12:34:34,0,247 +chr1 37584681 rs215766 G A 44.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.380;DB;DP=10;Dels=0.00;FS=14.771;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=16.32;MQ0=0;MQRankSum=1.380;QD=7.33;ReadPosRankSum=0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,1:4:3:38,3,0 ./. 1/1:1,1:2:3:39,3,0 ./. +chr1 37959308 . A T 82.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.498;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=7.6855;MLEAC=3;MLEAF=0.375;MQ=18.73;MQ0=0;MQRankSum=1.200;QD=1.69;ReadPosRankSum=2.957;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:23:23,0,37 0/1:12,2:14:30:37,0,30 0/1:17,6:23:12:64,0,12 0/0:2,0:2:3:0,3,40 +chr1 38033346 . C T 45.57 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.985;DP=133;Dels=0.00;FS=4.500;HaplotypeScore=4.1738;MLEAC=3;MLEAF=0.375;MQ=32.24;MQ0=0;MQRankSum=-1.811;QD=0.48;ReadPosRankSum=1.072;SB=-3.442e-01 GT:AD:DP:GQ:PL 0/1:33,4:37:36:36,0,519 0/1:39,4:43:9:9,0,659 0/0:38,1:39:23:0,23,572 0/1:12,2:14:43:43,0,179 +chr1 38082197 . C T 235.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.497;DP=72;Dels=0.04;FS=22.975;HaplotypeScore=12.4448;MLEAC=4;MLEAF=0.500;MQ=24.91;MQ0=0;MQRankSum=0.976;QD=3.27;ReadPosRankSum=-1.161;SB=-2.421e+00 GT:AD:DP:GQ:PL 0/1:13,3:17:36:52,0,36 0/1:14,4:18:44:97,0,44 0/1:15,3:18:53:53,0,124 0/1:13,3:16:52:76,0,52 +chr1 38185098 . G C 178.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.019;DP=67;Dels=0.00;FS=22.892;HaplotypeScore=2.3942;MLEAC=4;MLEAF=0.500;MQ=27.88;MQ0=0;MQRankSum=-2.212;QD=2.67;ReadPosRankSum=1.613;SB=-2.631e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:25:25,0,316 0/1:14,2:16:29:29,0,246 0/1:14,5:19:78:78,0,331 0/1:8,4:12:89:89,0,110 +chr1 38226942 . C T 299.10 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.663;DP=101;Dels=0.01;FS=28.694;HaplotypeScore=9.5594;MLEAC=5;MLEAF=0.625;MQ=26.35;MQ0=0;MQRankSum=1.448;QD=2.96;ReadPosRankSum=1.719;SB=1.11 GT:AD:DP:GQ:PL 0/1:12,2:14:26:28,0,26 0/1:29,5:35:99:101,0,198 0/1:27,4:31:98:98,0,140 1/1:16,4:20:12:117,12,0 +chr1 38272660 rs2291297 G A 1592.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.399;DB;DP=162;Dels=0.01;FS=11.558;HaplotypeScore=1.3608;MLEAC=4;MLEAF=0.500;MQ=37.45;MQ0=0;MQRankSum=-3.045;QD=9.83;ReadPosRankSum=0.536;SB=-2.550e+02 GT:AD:DP:GQ:PL 0/1:25,11:36:99:318,0,705 0/1:32,11:43:99:290,0,1064 0/1:29,18:47:99:580,0,879 0/1:21,14:35:99:447,0,623 +chr1 38306712 . G A 32.26 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.244;DP=39;Dels=0.03;FS=42.264;HaplotypeScore=0.7691;MLEAC=4;MLEAF=0.500;MQ=16.19;MQ0=0;MQRankSum=-0.421;QD=1.24;ReadPosRankSum=0.908;SB=6.04 GT:AD:DP:GQ:PL 0/1:5,2:7:19:19,0,35 1/1:2,5:7:6:44,6,0 0/1:7,4:11:14:14,0,73 0/0:12,1:13:9:0,9,81 +chr1 38484959 . A C 84.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.508;DP=231;Dels=0.00;FS=78.959;HaplotypeScore=6.0354;MLEAC=1;MLEAF=0.125;MQ=37.41;MQ0=0;MQRankSum=-3.809;QD=2.36;ReadPosRankSum=-0.038;SB=-6.216e+00 GT:AD:DP:GQ:PL 0/0:57,2:60:70:0,70,1445 0/0:59,3:62:67:0,67,1749 0/0:69,3:72:91:0,91,1992 0/1:30,6:36:99:121,0,452 +chr1 39175198 . A G 110.36 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.955;DP=87;Dels=0.00;FS=60.067;HaplotypeScore=6.7859;MLEAC=3;MLEAF=0.375;MQ=16.48;MQ0=0;MQRankSum=2.558;QD=1.67;ReadPosRankSum=1.942;SB=1.45 GT:AD:DP:GQ:PL 0/1:15,2:17:20:24,0,20 0/1:19,9:28:8:96,0,8 0/0:18,3:21:12:0,12,120 0/1:16,5:21:33:33,0,98 +chr1 39352083 rs4491033 T G 1190.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.442;DB;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7085;MLEAC=5;MLEAF=0.625;MQ=33.93;MQ0=0;MQRankSum=-0.929;QD=23.81;ReadPosRankSum=-0.133;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,18:19:54:668,54,0 0/1:4,4:8:98:112,0,98 0/1:4,13:17:99:402,0,109 0/1:4,2:6:54:54,0,101 +chr1 39758993 rs6688708 C G 1952.56 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.904;DB;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.0759;MLEAC=7;MLEAF=0.875;MQ=36.74;MQ0=0;MQRankSum=-3.301;QD=23.81;ReadPosRankSum=-0.304;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,19:21:57:756,57,0 0/1:20,10:30:99:279,0,717 1/1:2,20:22:57:714,57,0 1/1:1,8:9:21:248,21,0 +chr1 39827379 . T A 114.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.757;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=1.6291;MLEAC=2;MLEAF=0.250;MQ=35.44;MQ0=0;MQRankSum=-3.613;QD=1.66;ReadPosRankSum=-0.938;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:72:0,72,926 0/1:30,7:37:99:127,0,877 0/0:34,2:36:61:0,61,1099 0/1:28,4:32:29:29,0,709 +chr1 40313018 rs75996803 C G 712.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.686;DB;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6777;MLEAC=3;MLEAF=0.375;MQ=35.16;MQ0=0;MQRankSum=-0.821;QD=10.48;ReadPosRankSum=1.676;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,8:26:99:257,0,356 0/0:28,0:28:75:0,75,979 0/1:19,12:31:99:363,0,467 0/1:7,4:11:99:136,0,176 +chr1 40661327 . A T 32.45 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.554;DP=92;Dels=0.00;FS=19.304;HaplotypeScore=1.4448;MLEAC=1;MLEAF=0.125;MQ=31.08;MQ0=0;MQRankSum=3.014;QD=1.05;ReadPosRankSum=-0.085;SB=-5.514e+00 GT:AD:DP:GQ:PL 0/0:21,1:22:10:0,10,474 0/0:29,2:31:7:0,7,776 0/1:27,4:31:68:68,0,522 0/0:8,0:8:12:0,12,114 +chr1 40735837 . T G 30.19 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.096;DP=67;Dels=0.03;FS=2.585;HaplotypeScore=13.6784;MLEAC=3;MLEAF=0.500;MQ=20.42;MQ0=0;MQRankSum=-0.229;QD=0.52;ReadPosRankSum=2.676;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:16:16,0,96 0/1:17,3:20:3:3,0,145 0/1:21,2:23:48:48,0,65 ./. +chr1 40776775 . T C 47.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.367;DP=108;Dels=0.05;FS=58.313;HaplotypeScore=12.4189;MLEAC=3;MLEAF=0.375;MQ=31.63;MQ0=0;MQRankSum=-1.958;QD=0.65;ReadPosRankSum=0.006;SB=-5.360e+00 GT:AD:DP:GQ:PL 0/1:22,2:24:11:11,0,541 0/1:17,4:21:72:72,0,377 0/0:32,2:34:6:0,6,784 0/1:21,2:24:4:4,0,517 +chr1 40981460 . T G 81 . AC=3;AF=0.750;AN=4;BaseQRankSum=-0.736;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.4998;MLEAC=3;MLEAF=0.750;MQ=22.00;MQ0=0;MQRankSum=-0.736;QD=10.13;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,3:5:6:58,6,0 0/1:1,2:3:30:59,0,30 ./. ./. +chr1 41098785 . G T 32.15 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.249;DP=205;Dels=0.01;FS=34.418;HaplotypeScore=17.6704;MLEAC=2;MLEAF=0.250;MQ=33.21;MQ0=0;MQRankSum=-4.000;QD=0.35;ReadPosRankSum=0.600;SB=-3.303e+00 GT:AD:DP:GQ:PL 0/1:44,4:49:9:9,0,1161 0/1:36,6:42:63:63,0,855 0/0:52,2:54:80:0,80,1572 0/0:52,5:57:23:0,23,1351 +chr1 41107558 . A G 93.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.821;DP=82;Dels=0.01;FS=18.465;HaplotypeScore=3.5310;MLEAC=3;MLEAF=0.375;MQ=28.16;MQ0=0;MQRankSum=0.673;QD=1.41;ReadPosRankSum=-0.537;SB=-3.222e+00 GT:AD:DP:GQ:PL 0/1:12,2:15:25:25,0,235 0/0:14,1:15:1:0,1,295 0/1:25,2:27:2:2,0,591 0/1:19,5:24:99:104,0,186 +chr1 41236488 . G T 63.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.372;DP=101;Dels=0.02;FS=5.786;HaplotypeScore=12.8029;MLEAC=3;MLEAF=0.375;MQ=23.65;MQ0=0;MQRankSum=-1.743;QD=0.89;ReadPosRankSum=1.423;SB=-6.339e-02 GT:AD:DP:GQ:PL 0/1:15,5:20:47:47,0,181 0/0:27,2:29:36:0,36,386 0/1:27,4:31:19:19,0,301 0/1:14,3:19:41:41,0,62 +chr1 41284252 . T C 54.02 . AC=4;AF=0.667;AN=6;BaseQRankSum=2.113;DP=25;Dels=0.00;FS=10.620;HaplotypeScore=3.0919;MLEAC=5;MLEAF=0.833;MQ=16.29;MQ0=0;MQRankSum=2.282;QD=4.16;ReadPosRankSum=-1.437;SB=5.19 GT:AD:DP:GQ:PL ./. 0/0:4,0:5:3:0,3,26 1/1:5,1:6:3:33,3,0 1/1:5,2:7:6:60,6,0 +chr1 41298752 . T C 50.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.866;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=4.6531;MLEAC=1;MLEAF=0.125;MQ=36.98;MQ0=0;MQRankSum=0.996;QD=1.76;ReadPosRankSum=-2.494;SB=-9.047e-03 GT:AD:DP:GQ:PL 0/0:28,1:29:36:0,36,815 0/0:28,1:29:27:0,27,650 0/0:32,1:33:39:0,39,817 0/1:24,5:29:87:87,0,738 +chr1 41404596 rs12043667 T C 252.36 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.473;DB;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.2500;MLEAC=3;MLEAF=0.375;MQ=34.88;MQ0=0;MQRankSum=0.473;QD=25.24;ReadPosRankSum=0.578;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,4:4:12:168,12,0 0/0:4,0:4:12:0,12,136 0/1:2,4:6:55:130,0,55 0/0:2,0:2:3:0,3,43 +chr1 41475784 . A C 326.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.409;DP=105;Dels=0.03;FS=2.458;HaplotypeScore=1.0395;MLEAC=4;MLEAF=0.500;MQ=32.20;MQ0=0;MQRankSum=-2.072;QD=3.11;ReadPosRankSum=5.319;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,5:24:94:94,0,320 0/1:22,4:26:78:78,0,241 0/1:27,5:32:85:85,0,429 0/1:15,5:20:99:112,0,181 +chr1 41627206 rs11209604 C T 155.29 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.193;DB;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=0.2416;MLEAC=1;MLEAF=0.125;MQ=33.35;MQ0=0;MQRankSum=-1.337;QD=6.75;ReadPosRankSum=-0.167;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,7:21:99:191,0,322 0/0:18,0:18:42:0,42,564 0/0:19,0:19:48:0,48,630 0/0:2,0:2:6:0,6,74 +chr1 42045302 rs2810564 G A 1244.04 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.990;DB;DP=47;Dels=0.04;FS=34.168;HaplotypeScore=3.3385;MLEAC=8;MLEAF=1.00;MQ=33.14;MQ0=0;MQRankSum=3.844;QD=26.47;ReadPosRankSum=-0.142;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,14:16:42:568,42,0 1/1:5,7:12:21:275,21,0 1/1:3,5:8:15:205,15,0 1/1:2,7:9:21:235,21,0 +chr1 42049140 rs2475842 C G 1191 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.840;DB;DP=50;Dels=0.02;FS=2.675;HaplotypeScore=1.1132;MLEAC=8;MLEAF=1.00;MQ=28.12;MQ0=0;MQRankSum=1.443;QD=23.82;ReadPosRankSum=2.188;SB=-5.568e+02 GT:AD:DP:GQ:PL 1/1:2,14:16:39:477,39,0 1/1:3,9:12:24:256,24,0 1/1:1,9:10:24:263,24,0 1/1:2,9:11:21:234,21,0 +chr1 42049728 . T G 214.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.776;DP=130;Dels=0.00;FS=51.526;HaplotypeScore=2.1263;MLEAC=4;MLEAF=0.500;MQ=37.05;MQ0=0;MQRankSum=2.103;QD=1.65;ReadPosRankSum=-1.009;SB=-1.296e-02 GT:AD:DP:GQ:PL 0/1:26,4:30:71:71,0,721 0/1:30,4:34:85:85,0,602 0/1:37,4:41:66:66,0,841 0/1:21,2:25:35:35,0,487 +chr1 42506578 . C T 52.28 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.071;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=28.14;MQ0=0;MQRankSum=-0.495;QD=3.49;ReadPosRankSum=0.778;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,1:4:21:21,0,29 0/1:6,1:7:13:13,0,52 1/1:2,2:4:6:63,6,0 0/0:5,0:5:9:0,9,93 +chr1 42657157 . A T 100.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.144;DP=143;Dels=0.01;FS=14.148;HaplotypeScore=5.1221;MLEAC=2;MLEAF=0.250;MQ=35.18;MQ0=0;MQRankSum=-4.254;QD=1.57;ReadPosRankSum=2.288;SB=0.339 GT:AD:DP:GQ:PL 0/1:24,6:30:97:97,0,588 0/0:39,1:40:55:0,55,970 0/0:36,2:38:39:0,39,1100 0/1:28,5:33:45:45,0,663 +chr1 42896569 . G C 88.52 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.312;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.5592;MLEAC=3;MLEAF=0.375;MQ=29.14;MQ0=0;MQRankSum=1.137;QD=2.68;ReadPosRankSum=2.362;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:47:47,0,158 0/0:10,0:10:9:0,9,97 0/1:11,3:14:67:67,0,143 0/1:4,1:5:17:17,0,54 +chr1 43111741 rs16829824 G A 157.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.184;DB;DP=111;Dels=0.00;FS=6.294;HaplotypeScore=1.1406;MLEAC=1;MLEAF=0.125;MQ=38.78;MQ0=0;MQRankSum=-2.371;QD=7.18;ReadPosRankSum=1.173;SB=-1.594e+01 GT:AD:DP:GQ:PL 0/1:15,7:22:99:194,0,421 0/0:40,0:40:99:0,114,1489 0/0:38,0:38:99:0,111,1484 0/0:11,0:11:30:0,30,388 +chr1 43132217 . G A 175.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.052;DP=97;Dels=0.01;FS=39.552;HaplotypeScore=13.4529;MLEAC=3;MLEAF=0.375;MQ=26.53;MQ0=0;MQRankSum=-1.537;QD=2.07;ReadPosRankSum=1.930;SB=0.437 GT:AD:DP:GQ:PL 0/1:23,6:29:45:45,0,283 0/1:24,6:30:98:98,0,421 0/1:21,4:26:76:76,0,341 0/0:11,0:11:15:0,15,164 +chr1 43689772 . A G 674.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.260;DP=170;Dels=0.00;FS=82.494;HaplotypeScore=4.4448;MLEAC=4;MLEAF=0.500;MQ=35.78;MQ0=0;MQRankSum=1.756;QD=3.97;ReadPosRankSum=2.426;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,9:41:99:198,0,637 0/1:43,9:52:99:165,0,853 0/1:31,9:40:99:213,0,512 0/1:30,7:37:99:141,0,460 +chr1 43779024 . T G 92.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.915;DP=141;Dels=0.00;FS=13.231;HaplotypeScore=23.1039;MLEAC=3;MLEAF=0.375;MQ=31.63;MQ0=0;MQRankSum=-2.640;QD=0.95;ReadPosRankSum=1.635;SB=-1.743e+01 GT:AD:DP:GQ:PL 0/1:27,6:33:54:54,0,540 0/1:29,4:33:58:58,0,636 0/0:37,6:43:61:0,61,918 0/1:29,3:32:24:24,0,391 +chr1 43829534 . C A 667.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.019;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5162;MLEAC=4;MLEAF=0.500;MQ=29.47;MQ0=0;MQRankSum=-0.586;QD=8.34;ReadPosRankSum=1.127;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,6:15:99:167,0,137 0/1:13,7:20:99:128,0,119 0/1:14,7:21:99:158,0,178 0/1:14,10:24:99:257,0,164 +chr1 43852031 . A G 182.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.390;DP=61;Dels=0.02;FS=2.518;HaplotypeScore=5.8553;MLEAC=4;MLEAF=0.500;MQ=27.71;MQ0=0;MQRankSum=1.338;QD=2.99;ReadPosRankSum=1.588;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:65:65,0,247 0/1:12,4:16:69:69,0,83 0/1:9,3:12:53:53,0,156 0/1:12,2:14:38:38,0,194 +chr1 43907311 . C T 43.10 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.600;DP=193;Dels=0.01;FS=58.793;HaplotypeScore=8.6503;MLEAC=2;MLEAF=0.250;MQ=31.51;MQ0=0;MQRankSum=-2.579;QD=0.46;ReadPosRankSum=1.144;SB=-2.530e+00 GT:AD:DP:GQ:PL 0/1:41,7:48:56:56,0,1045 0/1:38,6:44:27:27,0,955 0/0:50,3:53:49:0,49,1479 0/0:44,3:47:2:0,2,934 +chr1 43916984 . T A 83.72 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.236;DP=219;Dels=0.01;FS=106.265;HaplotypeScore=17.3405;MLEAC=2;MLEAF=0.250;MQ=31.82;MQ0=0;MQRankSum=-0.602;QD=0.83;ReadPosRankSum=-1.606;SB=-2.146e+00 GT:AD:DP:GQ:PL 0/0:49,3:52:60:0,60,1476 0/1:48,4:52:11:11,0,1083 0/0:61,4:65:14:0,14,1594 0/1:41,6:47:99:113,0,831 +chr1 44086831 rs1143702 C T 419.87 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.762;DB;DP=51;Dels=0.02;FS=9.232;HaplotypeScore=8.0206;MLEAC=6;MLEAF=0.750;MQ=27.05;MQ0=0;MQRankSum=2.846;QD=11.05;ReadPosRankSum=-1.214;SB=-5.661e+01 GT:AD:DP:GQ:PL 0/0:13,0:13:9:0,9,123 1/1:8,5:13:15:182,15,0 1/1:9,4:13:12:147,12,0 1/1:7,4:11:12:140,12,0 +chr1 44386445 rs80055718 G A 709.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.960;DB;DP=116;Dels=0.01;FS=0.981;HaplotypeScore=4.0922;MLEAC=3;MLEAF=0.375;MQ=35.37;MQ0=0;MQRankSum=-2.676;QD=8.55;ReadPosRankSum=-0.736;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:19,10:29:99:294,0,515 0/0:33,0:33:93:0,93,1153 0/1:19,6:26:99:177,0,552 0/1:17,10:27:99:282,0,312 +chr1 44426948 rs2906596 G A 4525.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.843;DB;DP=172;Dels=0.00;FS=11.259;HaplotypeScore=0.6620;MLEAC=7;MLEAF=0.875;MQ=31.32;MQ0=0;MQRankSum=0.892;QD=26.31;ReadPosRankSum=1.211;SB=-9.201e+01 GT:AD:DP:GQ:PL 0/1:26,19:45:99:518,0,683 1/1:3,43:46:99:1524,129,0 1/1:3,39:42:59:1274,59,0 1/1:1,38:39:99:1209,108,0 +chr1 44461581 . A T 139.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.590;DP=192;Dels=0.01;FS=61.319;HaplotypeScore=9.6365;MLEAC=2;MLEAF=0.250;MQ=30.85;MQ0=0;MQRankSum=-2.816;QD=1.57;ReadPosRankSum=2.442;SB=-1.663e+00 GT:AD:DP:GQ:PL 0/0:46,2:48:71:0,71,1035 0/0:52,3:55:42:0,42,977 0/1:40,5:46:64:64,0,984 0/1:35,7:42:99:117,0,681 +chr1 44461732 . A C 281.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.173;DP=69;Dels=0.00;FS=7.939;HaplotypeScore=6.8877;MLEAC=4;MLEAF=0.500;MQ=27.90;MQ0=0;MQRankSum=0.372;QD=4.08;ReadPosRankSum=3.110;SB=-7.901e-02 GT:AD:DP:GQ:PL 0/1:12,6:18:99:156,0,138 0/1:15,4:19:82:82,0,192 0/1:18,2:20:16:16,0,434 0/1:7,5:12:70:70,0,84 +chr1 44685128 . T C 59.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.495;DP=77;Dels=0.03;FS=62.384;HaplotypeScore=7.0373;MLEAC=2;MLEAF=0.250;MQ=28.88;MQ0=0;MQRankSum=-2.344;QD=1.42;ReadPosRankSum=1.629;SB=-3.971e+00 GT:AD:DP:GQ:PL 0/0:11,1:12:1:0,1,267 0/1:16,3:19:48:48,0,202 0/0:17,4:22:13:0,13,404 0/1:18,4:22:51:51,0,329 +chr1 44685217 . C T 36.17 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.879;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=6.4421;MLEAC=4;MLEAF=0.500;MQ=28.55;MQ0=0;MQRankSum=-1.488;QD=0.88;ReadPosRankSum=2.123;SB=-1.295e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:33:33,0,247 0/1:6,3:9:15:15,0,62 0/1:14,2:16:9:9,0,168 0/1:3,1:4:21:21,0,53 +chr1 44685494 . C T 233.38 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.457;DP=225;Dels=0.02;FS=249.839;HaplotypeScore=29.3100;MLEAC=4;MLEAF=0.500;MQ=27.27;MQ0=0;MQRankSum=-4.686;QD=1.04;ReadPosRankSum=-0.594;SB=-1.811e+00 GT:AD:DP:GQ:PL 0/1:44,11:55:99:140,0,816 0/1:40,13:53:99:113,0,612 0/1:51,7:58:7:7,0,1049 0/1:42,12:54:15:15,0,790 +chr1 45120789 . C T 54.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.092;DP=117;Dels=0.01;FS=95.549;HaplotypeScore=14.0585;MLEAC=2;MLEAF=0.250;MQ=29.84;MQ0=0;MQRankSum=-3.091;QD=0.91;ReadPosRankSum=1.378;SB=2.86 GT:AD:DP:GQ:PL 0/1:23,4:27:46:46,0,571 0/1:28,4:32:50:50,0,641 0/0:28,4:33:26:0,26,777 0/0:21,3:24:36:0,36,419 +chr1 45163967 . C G 39.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.463;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=40.9127;MLEAC=3;MLEAF=0.375;MQ=23.67;MQ0=0;MQRankSum=0.016;QD=0.35;ReadPosRankSum=0.482;SB=-7.486e-02 GT:AD:DP:GQ:PL 0/0:22,1:23:18:0,18,194 0/1:36,3:40:17:17,0,267 0/1:42,3:46:31:31,0,321 0/1:20,2:23:34:34,0,115 +chr1 45213425 . T C 71.29 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.359;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.9387;MLEAC=5;MLEAF=0.625;MQ=23.37;MQ0=0;MQRankSum=-0.600;QD=5.94;ReadPosRankSum=-0.289;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:3:32,3,0 0/1:3,3:6:47:52,0,47 0/0:3,1:4:3:0,3,26 1/1:0,2:2:3:29,3,0 +chr1 45227667 . T G 456.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.161;DP=89;Dels=0.01;FS=13.629;HaplotypeScore=20.1328;MLEAC=4;MLEAF=0.500;MQ=28.26;MQ0=0;MQRankSum=-1.290;QD=5.13;ReadPosRankSum=1.662;SB=-1.191e-02 GT:AD:DP:GQ:PL 0/1:13,7:20:99:177,0,198 0/1:18,4:22:45:45,0,259 0/1:17,7:24:99:178,0,124 0/1:16,6:22:99:99,0,241 +chr1 45228043 . G T 317.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.403;DP=105;Dels=0.01;FS=144.870;HaplotypeScore=24.1489;MLEAC=3;MLEAF=0.375;MQ=25.25;MQ0=0;MQRankSum=-1.874;QD=3.88;ReadPosRankSum=-0.134;SB=0.082 GT:AD:DP:GQ:PL 0/1:18,8:27:99:132,0,302 0/0:20,2:23:3:0,3,314 0/1:23,10:33:99:137,0,490 0/1:12,9:21:90:90,0,146 +chr1 45241777 . A C 103.74 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.490;DP=43;Dels=0.00;FS=2.547;HaplotypeScore=2.1463;MLEAC=7;MLEAF=0.875;MQ=14.14;MQ0=0;MQRankSum=2.731;QD=2.96;ReadPosRankSum=-1.610;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:11,1:12:3:32,3,0 1/1:7,4:11:9:82,9,0 1/1:11,1:12:3:32,3,0 0/0:8,0:8:3:0,3,24 +chr1 45250534 . G A 55.39 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.300;DP=119;Dels=0.01;FS=26.004;HaplotypeScore=12.4455;MLEAC=3;MLEAF=0.375;MQ=25.41;MQ0=0;MQRankSum=0.755;QD=0.60;ReadPosRankSum=-2.715;SB=-2.733e+00 GT:AD:DP:GQ:PL 0/1:25,3:28:31:31,0,481 0/0:25,1:26:5:0,5,341 0/1:34,2:36:3:3,0,446 0/1:25,3:28:61:61,0,285 +chr1 45250925 . T C 43.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.341;DP=105;Dels=0.03;FS=13.341;HaplotypeScore=6.8511;MLEAC=2;MLEAF=0.250;MQ=25.64;MQ0=0;MQRankSum=0.144;QD=0.73;ReadPosRankSum=1.186;SB=1.15 GT:AD:DP:GQ:PL 0/0:25,0:25:33:0,33,309 0/1:20,3:23:21:21,0,282 0/1:31,4:35:64:64,0,402 0/0:19,0:19:24:0,24,284 +chr1 45297529 . T G 493.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.148;DP=81;Dels=0.02;FS=3.168;HaplotypeScore=6.0522;MLEAC=4;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=0.246;QD=6.09;ReadPosRankSum=5.067;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,7:17:81:153,0,81 0/1:13,8:21:99:145,0,194 0/1:15,7:22:66:146,0,66 0/1:12,7:19:63:92,0,63 +chr1 45795174 . T C 68.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.447;DP=153;Dels=0.05;FS=0.000;HaplotypeScore=16.7385;MLEAC=3;MLEAF=0.375;MQ=23.17;MQ0=0;MQRankSum=-0.678;QD=0.57;ReadPosRankSum=0.529;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,4:35:46:46,0,333 0/0:31,0:32:24:0,24,261 0/1:42,2:44:7:7,0,383 0/1:30,3:35:58:58,0,226 +chr1 45887288 rs3790582 T C 1571.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.762;DB;DP=94;Dels=0.02;FS=3.062;HaplotypeScore=1.4649;MLEAC=4;MLEAF=0.500;MQ=38.32;MQ0=0;MQRankSum=-1.393;QD=23.11;ReadPosRankSum=-0.347;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,0:26:57:0,57,742 1/1:0,25:25:75:1035,75,0 0/1:17,13:30:99:424,0,466 0/1:6,5:11:99:161,0,139 +chr1 45960742 . T C 95.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.420;DP=92;Dels=0.00;FS=7.649;HaplotypeScore=28.5148;MLEAC=4;MLEAF=0.500;MQ=19.61;MQ0=0;MQRankSum=2.205;QD=1.04;ReadPosRankSum=-2.637;SB=0.067 GT:AD:DP:GQ:PL 0/1:15,2:20:28:28,0,46 0/1:24,2:27:36:36,0,76 0/1:20,1:23:17:17,0,58 0/1:18,3:22:32:57,0,32 +chr1 45962379 . A G 41.46 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.047;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.4726;MLEAC=3;MLEAF=0.500;MQ=20.93;MQ0=0;MQRankSum=0.609;QD=1.97;ReadPosRankSum=0.234;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:22:22,0,71 0/1:4,2:6:44:44,0,54 0/1:3,2:5:14:14,0,51 ./. +chr1 45962409 rs11211124 T C 40.03 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.754;DB;DP=10;Dels=0.00;FS=3.522;HaplotypeScore=0.3263;MLEAC=5;MLEAF=0.833;MQ=17.05;MQ0=0;MQRankSum=0.937;QD=8.01;ReadPosRankSum=-0.550;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,31 1/1:1,2:3:6:56,6,0 1/1:1,1:2:3:23,3,0 ./. +chr1 45980714 . A C 134.66 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.444;DP=224;Dels=0.00;FS=4.345;HaplotypeScore=6.8715;MLEAC=3;MLEAF=0.375;MQ=28.64;MQ0=0;MQRankSum=-0.227;QD=0.81;ReadPosRankSum=3.785;SB=0.147 GT:AD:DP:GQ:PL 0/1:55,4:59:12:12,0,994 0/1:54,5:59:70:70,0,757 0/0:54,3:57:10:0,10,658 0/1:42,7:49:95:95,0,494 +chr1 45996653 . T G 167.80 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.485;DP=43;Dels=0.00;FS=21.239;HaplotypeScore=4.6601;MLEAC=5;MLEAF=0.625;MQ=28.76;MQ0=0;MQRankSum=0.036;QD=3.90;ReadPosRankSum=-0.036;SB=-3.137e+00 GT:AD:DP:GQ:PL 1/1:7,2:9:6:67,6,0 1/1:7,3:11:9:84,9,0 0/1:9,2:12:48:48,0,138 0/1:9,1:11:13:13,0,86 +chr1 46086449 . C G 114.27 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.596;DP=174;Dels=0.00;FS=141.714;HaplotypeScore=7.1379;MLEAC=3;MLEAF=0.375;MQ=38.22;MQ0=0;MQRankSum=-4.898;QD=0.87;ReadPosRankSum=2.743;SB=-1.695e+00 GT:AD:DP:GQ:PL 0/1:29,6:35:96:96,0,932 0/1:45,4:49:3:3,0,1386 0/0:39,3:42:20:0,20,1313 0/1:41,6:48:56:56,0,1391 +chr1 46247500 . T C 94.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.921;DP=55;Dels=0.00;FS=5.965;HaplotypeScore=2.4852;MLEAC=3;MLEAF=0.500;MQ=17.50;MQ0=0;MQRankSum=1.389;QD=2.14;ReadPosRankSum=-0.328;SB=-4.895e+01 GT:AD:DP:GQ:PL 0/1:12,3:15:43:43,0,103 0/1:8,3:11:34:50,0,34 0/1:16,2:18:40:40,0,116 ./. +chr1 46425195 . A G 186.27 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.119;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3935;MLEAC=1;MLEAF=0.125;MQ=32.81;MQ0=0;MQRankSum=-1.636;QD=12.42;ReadPosRankSum=0.250;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,1:20:7:0,7,401 0/0:22,1:23:15:0,15,486 0/0:23,1:24:51:0,51,611 0/1:8,7:15:67:222,0,67 +chr1 46663450 . G T 197.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.852;DP=140;Dels=0.01;FS=27.340;HaplotypeScore=7.3818;MLEAC=3;MLEAF=0.375;MQ=33.46;MQ0=0;MQRankSum=-0.910;QD=1.94;ReadPosRankSum=-1.677;SB=2.61 GT:AD:DP:GQ:PL 0/1:33,5:38:99:108,0,606 0/0:37,1:38:34:0,34,668 0/1:32,4:36:63:63,0,634 0/1:23,4:27:70:70,0,413 +chr1 46685629 . C A 362.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.964;DP=83;Dels=0.01;FS=135.330;HaplotypeScore=6.9387;MLEAC=4;MLEAF=0.500;MQ=30.40;MQ0=0;MQRankSum=-4.619;QD=4.37;ReadPosRankSum=-0.337;SB=-2.463e+00 GT:AD:DP:GQ:PL 0/1:10,7:17:91:91,0,323 0/1:16,7:23:99:124,0,444 0/1:10,7:17:99:150,0,261 0/1:19,6:25:40:40,0,353 +chr1 46715921 . G T 190.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.807;DP=62;Dels=0.02;FS=2.612;HaplotypeScore=1.0267;MLEAC=4;MLEAF=0.500;MQ=31.94;MQ0=0;MQRankSum=-3.400;QD=3.08;ReadPosRankSum=2.400;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,5:20:95:95,0,387 0/1:9,5:14:72:72,0,221 0/1:12,4:16:61:61,0,337 0/1:9,2:11:4:4,0,214 +chr1 46751019 . C G 123.74 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.024;DP=69;Dels=0.00;FS=2.407;HaplotypeScore=2.2375;MLEAC=4;MLEAF=0.500;MQ=28.46;MQ0=0;MQRankSum=1.621;QD=2.47;ReadPosRankSum=1.717;SB=-2.019e-02 GT:AD:DP:GQ:PL 0/1:12,5:17:99:113,0,134 0/1:19,2:21:22:22,0,220 0/1:11,1:12:29:29,0,55 0/0:18,1:19:1:0,1,298 +chr1 46810784 . C A 32.09 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.298;DP=137;Dels=0.01;FS=77.235;HaplotypeScore=8.9614;MLEAC=1;MLEAF=0.125;MQ=29.14;MQ0=0;MQRankSum=-0.967;QD=1.00;ReadPosRankSum=0.124;SB=-6.499e+00 GT:AD:DP:GQ:PL 0/0:38,2:40:28:0,28,756 0/0:35,2:37:46:0,46,737 0/1:25,6:31:67:67,0,566 0/0:25,3:28:0:0,0,520 +chr1 46874708 . G T 86.15 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.851;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.8054;MLEAC=2;MLEAF=0.250;MQ=29.63;MQ0=0;MQRankSum=0.851;QD=3.59;ReadPosRankSum=-0.703;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:27:0,27,290 0/0:14,0:14:27:0,27,285 0/1:13,1:14:9:9,0,184 0/1:6,4:10:99:117,0,134 +chr1 47013364 rs1258041 T C 141.54 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.736;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.4963;MLEAC=8;MLEAF=1.00;MQ=25.00;MQ0=0;MQRankSum=0.736;QD=12.87;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:34,3,0 1/1:1,1:2:3:34,3,0 1/1:1,2:3:6:70,6,0 1/1:2,1:3:3:40,3,0 +chr1 47037689 . A G 49.10 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.633;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.1923;MLEAC=5;MLEAF=0.625;MQ=21.82;MQ0=0;MQRankSum=0.741;QD=1.29;ReadPosRankSum=1.133;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:10,1:11:3:26,3,0 1/1:12,2:14:6:46,6,0 0/1:11,1:13:20:20,0,23 0/0:9,0:9:3:0,3,23 +chr1 47123725 . G C 215.80 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.250;DP=31;Dels=0.03;FS=12.330;HaplotypeScore=6.0989;MLEAC=7;MLEAF=0.875;MQ=17.29;MQ0=0;MQRankSum=2.176;QD=6.96;ReadPosRankSum=1.620;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,5:8:14:72,0,14 1/1:5,3:8:3:27,3,0 1/1:5,5:10:15:133,15,0 1/1:2,1:3:3:25,3,0 +chr1 47264844 . C T 37.46 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.218;DP=62;Dels=0.02;FS=5.453;HaplotypeScore=5.0787;MLEAC=3;MLEAF=0.375;MQ=32.04;MQ0=0;MQRankSum=0.648;QD=0.78;ReadPosRankSum=-0.648;SB=-5.508e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:25:25,0,158 0/0:13,0:13:9:0,9,85 0/1:18,1:19:23:23,0,150 0/1:15,2:17:32:32,0,246 +chr1 47276919 . A T 79.62 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.475;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=3.5261;MLEAC=1;MLEAF=0.125;MQ=29.91;MQ0=0;MQRankSum=-2.651;QD=2.95;ReadPosRankSum=0.429;SB=-1.620e+00 GT:AD:DP:GQ:PL 0/0:15,0:15:24:0,24,317 0/1:21,6:27:99:115,0,360 0/0:20,1:21:3:0,3,299 0/0:9,2:11:15:0,15,193 +chr1 47496983 rs12041262 C A 208.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.175;DB;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.5897;MLEAC=1;MLEAF=0.125;MQ=26.30;MQ0=0;MQRankSum=-1.448;QD=8.36;ReadPosRankSum=-0.551;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,12:25:99:245,0,330 0/0:17,1:19:36:0,36,404 0/0:23,0:23:48:0,48,526 0/0:19,0:19:27:0,27,264 +chr1 47603127 . G A 69.89 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.156;DP=116;Dels=0.01;FS=4.477;HaplotypeScore=8.0543;MLEAC=4;MLEAF=0.500;MQ=16.20;MQ0=0;MQRankSum=2.908;QD=0.60;ReadPosRankSum=-1.804;SB=-1.196e-02 GT:AD:DP:GQ:PL 0/1:30,1:31:4:4,0,133 0/1:25,4:29:42:42,0,195 0/1:25,3:28:47:47,0,136 0/1:25,2:27:18:18,0,37 +chr1 47728733 . C A 120.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.021;DP=103;Dels=0.01;FS=15.517;HaplotypeScore=9.9135;MLEAC=4;MLEAF=0.500;MQ=28.94;MQ0=0;MQRankSum=-2.193;QD=1.17;ReadPosRankSum=1.195;SB=-1.000e-01 GT:AD:DP:GQ:PL 0/1:24,3:27:46:46,0,281 0/1:27,5:32:67:67,0,352 0/1:28,3:32:37:37,0,273 0/1:10,1:11:13:13,0,72 +chr1 47767914 rs3125630 G A 2237.33 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.146;DB;DP=69;Dels=0.00;FS=7.791;HaplotypeScore=1.6451;MLEAC=8;MLEAF=1.00;MQ=33.31;MQ0=0;MQRankSum=2.555;QD=32.43;ReadPosRankSum=0.963;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:45:529,45,0 1/1:2,16:18:45:566,45,0 1/1:1,24:25:48:858,48,0 0/1:1,10:11:4:325,0,4 +chr1 48690229 rs10788884 C A 41.26 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.358;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=24.99;MQ0=0;MQRankSum=0.358;QD=10.31;ReadPosRankSum=-0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,2:4:6:76,6,0 0/0:1,0:1:3:0,3,43 ./. +chr1 48701334 . C T 42.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.155;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.7327;MLEAC=2;MLEAF=0.250;MQ=29.45;MQ0=0;MQRankSum=-1.901;QD=2.38;ReadPosRankSum=1.304;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:9:0,9,97 0/0:8,0:8:9:0,9,98 0/1:8,1:9:13:13,0,180 0/1:5,4:9:45:70,0,45 +chr1 48713278 . A T 133.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.061;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2227;MLEAC=2;MLEAF=0.250;MQ=34.20;MQ0=0;MQRankSum=-1.415;QD=3.52;ReadPosRankSum=-0.531;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,2:24:12:0,12,657 0/1:13,4:17:84:84,0,326 0/0:26,0:26:54:0,54,640 0/1:16,5:21:91:91,0,360 +chr1 48790908 rs3767612 C A 49.94 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.178;DB;DP=128;Dels=0.00;FS=16.097;HaplotypeScore=2.4167;MLEAC=4;MLEAF=0.500;MQ=30.73;MQ0=0;MQRankSum=1.588;QD=0.39;ReadPosRankSum=2.298;SB=-1.343e+00 GT:AD:DP:GQ:PL 0/1:29,2:31:4:4,0,517 0/1:26,2:29:37:37,0,329 0/1:33,2:35:34:34,0,375 0/1:31,2:33:16:16,0,418 +chr1 49179790 rs12756936 G C 31.02 . AC=4;AF=1.00;AN=4;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=17.55;MQ0=0;QD=6.20;SB=-2.901e+01 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:32,3,0 ./. 1/1:2,1:3:3:32,3,0 +chr1 50957411 . A T 331.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.855;DP=97;Dels=0.00;FS=63.717;HaplotypeScore=1.2476;MLEAC=4;MLEAF=0.500;MQ=37.97;MQ0=0;MQRankSum=0.984;QD=3.42;ReadPosRankSum=1.281;SB=-2.047e+00 GT:AD:DP:GQ:PL 0/1:18,6:24:99:177,0,395 0/1:26,3:29:48:48,0,547 0/1:30,4:34:71:71,0,713 0/1:7,3:10:78:78,0,169 +chr1 51253912 . A G 43.11 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.030;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.4021;MLEAC=3;MLEAF=0.500;MQ=27.65;MQ0=0;MQRankSum=-0.045;QD=1.05;ReadPosRankSum=1.746;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,1:11:21:21,0,22 0/1:14,2:16:53:53,0,73 0/1:13,1:14:7:7,0,117 ./. +chr1 51312472 . A C 50.03 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.896;DP=20;Dels=0.00;FS=6.039;HaplotypeScore=1.4107;MLEAC=2;MLEAF=0.333;MQ=22.49;MQ0=0;MQRankSum=0.791;QD=3.57;ReadPosRankSum=-0.053;SB=-2.335e+00 GT:AD:DP:GQ:PL 0/1:3,2:5:39:39,0,63 0/0:5,0:5:3:0,3,25 0/1:6,3:9:48:48,0,71 ./. +chr1 51774929 . T C 123.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.999;DP=152;Dels=0.00;FS=11.443;HaplotypeScore=5.6997;MLEAC=2;MLEAF=0.250;MQ=36.43;MQ0=0;MQRankSum=-3.078;QD=1.72;ReadPosRankSum=-1.447;SB=-7.886e-03 GT:AD:DP:GQ:PL 0/0:31,1:32:52:0,52,921 0/1:30,5:35:54:54,0,770 0/0:46,2:48:44:0,44,1189 0/1:31,6:37:99:111,0,820 +chr1 52302073 . C A 272.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.092;DP=95;Dels=0.02;FS=88.149;HaplotypeScore=18.6315;MLEAC=4;MLEAF=0.500;MQ=26.90;MQ0=0;MQRankSum=-2.499;QD=2.87;ReadPosRankSum=-1.354;SB=-1.776e+00 GT:AD:DP:GQ:PL 0/1:24,4:28:42:42,0,383 0/1:14,4:18:46:46,0,190 0/1:25,8:34:99:124,0,415 0/1:9,4:13:68:103,0,68 +chr1 52402856 rs10888741 T G 169.29 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.637;DB;DP=13;Dels=0.00;FS=12.175;HaplotypeScore=0.9326;MLEAC=8;MLEAF=1.00;MQ=21.13;MQ0=0;MQRankSum=2.637;QD=13.02;ReadPosRankSum=-0.143;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:9:104,9,0 1/1:3,1:4:3:35,3,0 1/1:3,1:4:3:33,3,0 1/1:1,1:2:3:34,3,0 +chr1 52446578 . T A 591.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.166;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=5.5421;MLEAC=4;MLEAF=0.500;MQ=18.78;MQ0=0;MQRankSum=3.739;QD=5.86;ReadPosRankSum=2.803;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,8:21:19:166,0,19 0/1:19,10:29:37:180,0,37 0/1:16,9:25:25:139,0,25 0/1:18,7:25:19:149,0,19 +chr1 52498841 rs140463476 T C 455.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.874;DB;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.9274;MLEAC=1;MLEAF=0.125;MQ=37.32;MQ0=0;MQRankSum=-1.150;QD=19.83;ReadPosRankSum=0.518;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:8,15:23:99:492,0,255 0/0:41,0:41:99:0,111,1475 0/0:54,0:54:99:0,144,1826 0/0:35,0:35:99:0,102,1309 +chr1 52646257 rs141588622 A C 108.81 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.833;DB;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.3289;MLEAC=2;MLEAF=0.333;MQ=16.80;MQ0=0;MQRankSum=2.444;QD=10.88;ReadPosRankSum=0.175;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,61 1/1:5,5:10:12:149,12,0 0/0:8,0:8:3:0,3,22 ./. +chr1 52820227 . T C 44.87 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.090;DP=112;Dels=0.02;FS=0.000;HaplotypeScore=8.7284;MLEAC=2;MLEAF=0.250;MQ=34.22;MQ0=0;MQRankSum=-4.321;QD=0.75;ReadPosRankSum=-0.842;SB=0.066 GT:AD:DP:GQ:PL 0/0:25,3:28:14:0,14,814 0/1:28,6:34:78:78,0,742 0/1:22,4:26:5:5,0,733 0/0:20,2:22:54:0,54,689 +chr1 53236871 . A C 70.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.837;DP=223;Dels=0.00;FS=71.083;HaplotypeScore=8.1761;MLEAC=1;MLEAF=0.125;MQ=36.74;MQ0=0;MQRankSum=-3.714;QD=1.40;ReadPosRankSum=-0.064;SB=-7.223e+00 GT:AD:DP:GQ:PL 0/0:60,2:62:99:0,108,1974 0/0:54,4:58:57:0,57,1764 0/0:49,4:53:19:0,19,1696 0/1:42,8:50:99:106,0,1181 +chr1 53461255 rs79465524 A C 139 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.533;DB;DP=53;Dels=0.00;FS=1.864;HaplotypeScore=0.2499;MLEAC=1;MLEAF=0.125;MQ=35.70;MQ0=0;MQRankSum=1.537;QD=10.69;ReadPosRankSum=0.046;SB=-3.493e+01 GT:AD:DP:GQ:PL 0/1:8,5:13:99:175,0,243 0/0:17,0:17:33:0,33,423 0/0:13,0:13:33:0,33,428 0/0:10,0:10:24:0,24,336 +chr1 53461314 . T C 36.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.088;DP=88;Dels=0.00;FS=2.355;HaplotypeScore=6.5509;MLEAC=2;MLEAF=0.250;MQ=32.09;MQ0=0;MQRankSum=-0.607;QD=1.05;ReadPosRankSum=0.202;SB=-5.334e-03 GT:AD:DP:GQ:PL 0/1:16,1:17:5:5,0,239 0/0:26,0:26:42:0,42,469 0/0:26,1:27:34:0,34,666 0/1:14,4:18:70:70,0,257 +chr1 53504598 . C A 63.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.742;DP=149;Dels=0.01;FS=46.218;HaplotypeScore=0.5915;MLEAC=4;MLEAF=0.500;MQ=34.49;MQ0=0;MQRankSum=-3.613;QD=0.59;ReadPosRankSum=-2.650;SB=-2.731e+00 GT:AD:DP:GQ:PL 0/1:27,3:30:25:25,0,808 0/0:36,4:40:1:0,1,1086 0/1:47,7:54:69:69,0,1389 0/1:22,2:24:9:9,0,521 +chr1 53547716 . G A 129.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.179;DP=103;Dels=0.01;FS=102.166;HaplotypeScore=8.8070;MLEAC=3;MLEAF=0.375;MQ=33.16;MQ0=0;MQRankSum=-3.931;QD=1.64;ReadPosRankSum=0.544;SB=0.961 GT:AD:DP:GQ:PL 0/1:17,2:19:21:21,0,446 0/0:20,3:23:31:0,31,625 0/1:31,5:37:39:39,0,759 0/1:17,6:23:99:113,0,391 +chr1 54426082 . A C 31.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.195;DP=224;Dels=0.00;FS=15.880;HaplotypeScore=4.1829;MLEAC=1;MLEAF=0.125;MQ=37.44;MQ0=0;MQRankSum=-2.143;QD=1.33;ReadPosRankSum=0.449;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:65,1:66:99:0,148,2093 0/0:61,0:61:99:0,165,2115 0/0:73,0:73:99:0,190,2466 0/1:20,4:24:68:68,0,477 +chr1 54441763 . T C 125.30 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.485;DP=43;Dels=0.02;FS=11.666;HaplotypeScore=2.6975;MLEAC=3;MLEAF=0.500;MQ=23.51;MQ0=0;MQRankSum=0.410;QD=3.58;ReadPosRankSum=1.380;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:7,1:9:21:21,0,58 0/1:11,3:14:62:62,0,75 0/1:8,3:11:43:81,0,43 +chr1 55073524 . G T 33.38 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.021;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=15.0645;MLEAC=1;MLEAF=0.125;MQ=17.67;MQ0=0;MQRankSum=0.496;QD=1.85;ReadPosRankSum=-1.137;SB=11.07 GT:AD:DP:GQ:PL 0/0:7,0:7:3:0,3,28 0/0:12,1:13:6:0,6,60 0/1:13,5:18:25:68,0,25 0/0:8,0:9:6:0,6,58 +chr1 55075067 . A G 62.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.022;DP=98;Dels=0.01;FS=21.537;HaplotypeScore=12.0346;MLEAC=4;MLEAF=0.500;MQ=25.57;MQ0=0;MQRankSum=0.747;QD=0.64;ReadPosRankSum=1.643;SB=-2.957e+00 GT:AD:DP:GQ:PL 0/1:28,2:31:4:4,0,406 0/1:17,3:20:58:58,0,188 0/1:25,1:26:3:3,0,257 0/1:18,2:20:37:37,0,58 +chr1 55076238 rs7535372 C A 93.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.153;DB;DP=66;Dels=0.02;FS=1.635;HaplotypeScore=7.0808;MLEAC=4;MLEAF=0.500;MQ=18.03;MQ0=0;MQRankSum=1.685;QD=1.42;ReadPosRankSum=-0.266;SB=-3.737e+01 GT:AD:DP:GQ:PL 0/1:11,6:17:34:46,0,34 0/1:15,2:18:13:13,0,69 0/1:15,5:20:36:36,0,97 0/1:5,5:10:15:41,0,15 +chr1 55085658 . G T 30.33 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.815;DP=84;Dels=0.00;FS=17.724;HaplotypeScore=10.2634;MLEAC=2;MLEAF=0.250;MQ=24.72;MQ0=0;MQRankSum=-0.344;QD=0.80;ReadPosRankSum=-0.088;SB=-4.259e+00 GT:AD:DP:GQ:PL 0/1:18,2:20:13:13,0,348 0/0:19,3:22:0:0,0,220 0/0:24,0:24:30:0,30,328 0/1:15,3:18:56:56,0,208 +chr1 55139495 . A T 93.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.293;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.4999;MLEAC=2;MLEAF=0.250;MQ=32.36;MQ0=0;MQRankSum=-3.239;QD=1.34;ReadPosRankSum=-1.969;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:37,1:39:70:0,70,1087 0/1:29,6:35:93:93,0,821 0/0:33,2:35:16:0,16,752 0/1:31,4:35:42:42,0,668 +chr1 55161112 . G A 245.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.101;DP=48;Dels=0.00;FS=10.725;HaplotypeScore=1.5331;MLEAC=4;MLEAF=0.500;MQ=31.99;MQ0=0;MQRankSum=-2.208;QD=5.12;ReadPosRankSum=-1.285;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:7,4:11:75:75,0,121 0/1:10,1:11:22:22,0,157 0/1:10,5:15:99:113,0,235 0/1:6,5:11:64:78,0,64 +chr1 55161175 . G C 70.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.483;DP=32;Dels=0.00;FS=8.776;HaplotypeScore=0.9664;MLEAC=4;MLEAF=0.500;MQ=31.09;MQ0=0;MQRankSum=-1.725;QD=2.21;ReadPosRankSum=-0.817;SB=-6.031e-01 GT:AD:DP:GQ:PL 0/1:7,1:8:5:5,0,180 0/1:7,1:8:18:18,0,102 0/1:2,4:6:29:67,0,29 0/1:9,1:10:22:22,0,138 +chr1 55165942 rs2304310 G A 264.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.188;DB;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.6967;MLEAC=4;MLEAF=0.500;MQ=28.27;MQ0=0;MQRankSum=0.632;QD=5.88;ReadPosRankSum=1.451;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:6,3:9:79:79,0,123 0/1:10,2:12:41:41,0,116 0/1:8,4:12:75:75,0,154 0/1:8,4:12:85:112,0,85 +chr1 55523666 . G T 53.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.134;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=8.1765;MLEAC=3;MLEAF=0.375;MQ=24.74;MQ0=0;MQRankSum=-2.916;QD=1.05;ReadPosRankSum=-0.866;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,5:19:52:52,0,216 0/0:8,1:9:21:0,21,221 0/1:16,4:20:2:2,0,210 0/1:9,2:11:40:40,0,134 +chr1 55560796 rs503495 T C 547.37 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.079;DB;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.3319;MLEAC=6;MLEAF=1.00;MQ=25.12;MQ0=0;MQRankSum=2.205;QD=20.27;ReadPosRankSum=-1.575;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,6:6:18:193,18,0 1/1:7,4:11:12:136,12,0 1/1:2,8:10:24:256,24,0 ./. +chr1 57257668 rs2298129 C A 727.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.625;DB;DP=136;Dels=0.01;FS=1.622;HaplotypeScore=0.9000;MLEAC=2;MLEAF=0.250;MQ=36.33;MQ0=0;MQRankSum=-3.428;QD=11.93;ReadPosRankSum=-0.025;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:12,15:27:99:430,0,343 0/1:20,13:33:99:339,0,631 0/0:43,0:43:99:0,117,1518 0/0:32,0:32:90:0,90,1140 +chr1 57349281 . T A 119.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.949;DP=151;Dels=0.00;FS=54.239;HaplotypeScore=4.9705;MLEAC=3;MLEAF=0.375;MQ=36.05;MQ0=0;MQRankSum=0.417;QD=1.04;ReadPosRankSum=-2.396;SB=-1.713e-01 GT:AD:DP:GQ:PL 0/1:40,6:46:99:101,0,1088 0/0:36,0:36:84:0,84,1024 0/1:48,4:52:16:16,0,1154 0/1:15,2:17:46:46,0,327 +chr1 57476964 . A C 66.06 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.068;DP=149;Dels=0.01;FS=106.907;HaplotypeScore=11.2247;MLEAC=1;MLEAF=0.125;MQ=31.35;MQ0=0;MQRankSum=-1.289;QD=1.61;ReadPosRankSum=1.137;SB=-6.455e+00 GT:AD:DP:GQ:PL 0/0:37,2:39:22:0,22,902 0/0:30,2:33:13:0,13,696 0/1:34,7:41:99:102,0,832 0/0:32,1:35:41:0,41,702 +chr1 57756597 . G C 189.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.266;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4259;MLEAC=4;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=-2.963;QD=2.11;ReadPosRankSum=4.119;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,3:26:23:23,0,174 0/1:17,4:21:60:60,0,190 0/1:21,9:30:99:122,0,310 0/1:10,2:13:27:27,0,188 +chr1 58352643 rs1202827 C A 38.01 . AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=26.39;MQ0=0;QD=12.67;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:32,3,0 ./. 1/1:1,1:2:3:39,3,0 ./. +chr1 60563445 rs623241 T C 680.26 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.629;DB;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=1.2156;MLEAC=8;MLEAF=1.00;MQ=24.18;MQ0=0;MQRankSum=3.923;QD=18.90;ReadPosRankSum=2.354;SB=-1.267e+02 GT:AD:DP:GQ:PL 1/1:1,9:10:27:321,27,0 1/1:7,4:11:9:116,9,0 1/1:2,4:6:12:143,12,0 1/1:2,6:8:15:139,15,0 +chr1 62228894 . T A 44.31 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.648;DP=43;Dels=0.00;FS=2.884;HaplotypeScore=4.8494;MLEAC=4;MLEAF=0.667;MQ=20.62;MQ0=0;MQRankSum=1.002;QD=1.30;ReadPosRankSum=1.237;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:22:22,0,29 0/1:10,2:12:38:38,0,56 1/1:10,1:11:3:23,3,0 ./. +chr1 62341157 rs4598521 T C 1283.21 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.369;DB;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8997;MLEAC=7;MLEAF=0.875;MQ=33.30;MQ0=0;MQRankSum=-2.443;QD=25.16;ReadPosRankSum=-0.310;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,16:18:48:566,48,0 0/1:8,8:16:99:250,0,282 1/1:2,13:15:36:440,36,0 1/1:0,2:2:6:71,6,0 +chr1 62739056 . G C 106.62 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.318;DP=44;Dels=0.02;FS=20.002;HaplotypeScore=12.5348;MLEAC=5;MLEAF=0.625;MQ=16.53;MQ0=0;MQRankSum=1.842;QD=2.42;ReadPosRankSum=1.418;SB=0.439 GT:AD:DP:GQ:PL 0/1:6,4:10:32:67,0,32 1/1:8,4:12:3:23,3,0 0/1:11,2:13:36:36,0,38 0/1:6,2:8:23:23,0,41 +chr1 62954714 . T G 440.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.120;DP=87;Dels=0.03;FS=102.695;HaplotypeScore=6.6325;MLEAC=4;MLEAF=0.500;MQ=30.08;MQ0=0;MQRankSum=-1.273;QD=5.06;ReadPosRankSum=2.882;SB=-2.609e+00 GT:AD:DP:GQ:PL 0/1:16,8:24:99:174,0,226 0/1:22,8:30:99:155,0,436 0/1:16,6:22:99:149,0,182 0/1:7,1:8:3:3,0,214 +chr1 63836591 . T G 52.15 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.869;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.1948;MLEAC=3;MLEAF=0.375;MQ=25.65;MQ0=0;MQRankSum=-1.583;QD=0.69;ReadPosRankSum=2.393;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:15:15,0,242 0/1:18,6:24:56:56,0,138 0/1:28,2:30:23:23,0,267 0/0:8,0:8:6:0,6,63 +chr1 63872032 rs35383149 T C 255 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.425;DB;DP=122;Dels=0.00;FS=3.010;HaplotypeScore=0.7420;MLEAC=1;MLEAF=0.125;MQ=39.00;MQ0=0;MQRankSum=-1.156;QD=9.44;ReadPosRankSum=-0.957;SB=-1.067e+02 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,126,1690 0/1:18,9:27:99:291,0,459 0/0:45,0:45:99:0,132,1753 0/0:7,0:7:21:0,21,285 +chr1 63991140 rs9436686 T C 1650.28 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.654;DB;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=36.72;MQ0=0;MQRankSum=1.654;QD=36.67;ReadPosRankSum=-1.417;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,12:13:36:475,36,0 1/1:1,15:16:45:580,45,0 1/1:0,14:14:42:558,42,0 1/1:0,2:2:6:76,6,0 +chr1 64643707 . T G 370.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.014;DP=146;Dels=0.01;FS=14.775;HaplotypeScore=1.9715;MLEAC=4;MLEAF=0.500;MQ=34.84;MQ0=0;MQRankSum=-3.190;QD=2.54;ReadPosRankSum=-0.074;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:25,4:29:60:60,0,374 0/1:39,7:46:99:150,0,864 0/1:34,4:38:34:34,0,673 0/1:25,7:32:99:169,0,339 +chr1 64709891 rs10789152 A G 565.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.495;DB;DP=82;Dels=0.00;FS=2.327;HaplotypeScore=0.4338;MLEAC=2;MLEAF=0.250;MQ=35.42;MQ0=0;MQRankSum=1.484;QD=11.32;ReadPosRankSum=1.583;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,10:27:99:328,0,510 0/0:29,0:29:81:0,81,993 0/1:14,9:23:99:278,0,357 0/0:3,0:3:3:0,3,44 +chr1 65830213 . C G 45.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.029;DP=133;Dels=0.00;FS=20.280;HaplotypeScore=4.9242;MLEAC=2;MLEAF=0.250;MQ=31.62;MQ0=0;MQRankSum=-2.778;QD=0.89;ReadPosRankSum=0.515;SB=-1.068e+00 GT:AD:DP:GQ:PL 0/0:36,1:37:43:0,43,832 0/1:30,3:33:9:9,0,545 0/0:44,1:45:55:0,55,961 0/1:14,4:18:76:76,0,247 +chr1 65830608 rs1570868 T C 539.16 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.849;DB;DP=52;Dels=0.00;FS=5.482;HaplotypeScore=1.1885;MLEAC=6;MLEAF=0.750;MQ=34.43;MQ0=0;MQRankSum=-0.777;QD=10.37;ReadPosRankSum=-1.762;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,5:17:99:142,0,337 0/1:16,2:18:18:18,0,502 1/1:4,7:11:21:266,21,0 1/1:2,4:6:12:159,12,0 +chr1 65878500 . A T 39.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.363;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8951;MLEAC=1;MLEAF=0.125;MQ=33.98;MQ0=0;MQRankSum=-3.443;QD=1.09;ReadPosRankSum=3.554;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:44,2:46:58:0,58,980 0/1:29,6:36:75:75,0,657 0/0:34,0:34:66:0,66,841 0/0:5,0:5:9:0,9,112 +chr1 66074580 . G A 59.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.220;DP=109;Dels=0.00;FS=69.639;HaplotypeScore=2.6337;MLEAC=2;MLEAF=0.250;MQ=33.61;MQ0=0;MQRankSum=-2.883;QD=1.00;ReadPosRankSum=0.867;SB=-8.553e-01 GT:AD:DP:GQ:PL 0/1:26,3:29:40:40,0,650 0/1:25,5:31:61:61,0,732 0/0:30,4:34:11:0,11,781 0/0:15,0:15:33:0,33,379 +chr1 67242087 rs3816989 G A 216.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.541;DB;DP=120;Dels=0.01;FS=3.427;HaplotypeScore=2.1398;MLEAC=1;MLEAF=0.125;MQ=35.33;MQ0=0;MQRankSum=-1.067;QD=7.00;ReadPosRankSum=0.096;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/0:30,0:30:78:0,78,998 0/1:20,10:30:99:253,0,528 0/0:42,0:42:99:0,120,1488 0/0:17,0:17:36:0,36,451 +chr1 67292478 rs36067642 T A 1404.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.270;DB;DP=96;Dels=0.00;FS=6.108;HaplotypeScore=9.9322;MLEAC=4;MLEAF=0.500;MQ=36.54;MQ0=0;MQRankSum=-1.603;QD=21.60;ReadPosRankSum=-0.170;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:31,0:31:87:0,87,1100 1/1:3,25:28:14:902,14,0 0/1:14,12:26:99:369,0,401 0/1:4,7:11:79:181,0,79 +chr1 67508080 rs10543599 CCACT C 1238.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.779;DB;DP=149;FS=0.000;HaplotypeScore=68.3820;MLEAC=3;MLEAF=0.375;MQ=27.84;MQ0=0;MQRankSum=-3.910;QD=13.04;ReadPosRankSum=1.978;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:29,13:40:99:715,0,1660 0/0:50,0:51:99:0,135,3131 0/1:21,14:23:99:486,0,782 0/1:12,4:11:90:90,0,591 +chr1 67633812 rs1884444 G T 2330.55 . AC=7;AF=0.875;AN=8;BaseQRankSum=-2.242;DB;DP=139;Dels=0.01;FS=11.218;HaplotypeScore=5.0467;MLEAC=7;MLEAF=0.875;MQ=32.11;MQ0=0;MQRankSum=-3.553;QD=16.77;ReadPosRankSum=0.834;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:34,11:45:99:199,0,1056 1/1:9,20:29:60:713,60,0 1/1:15,35:50:83:1191,83,0 1/1:5,8:13:24:272,24,0 +chr1 68628349 rs113722484 G A 83 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.830;DB;DP=52;Dels=0.00;FS=19.742;HaplotypeScore=2.7277;MLEAC=3;MLEAF=0.375;MQ=18.85;MQ0=0;MQRankSum=1.546;QD=2.24;ReadPosRankSum=0.014;SB=-1.772e+01 GT:AD:DP:GQ:PL 0/0:13,2:15:18:0,18,168 0/1:9,2:11:14:40,0,14 0/1:8,1:9:19:19,0,59 0/1:13,4:17:56:67,0,56 +chr1 68955044 . A T 53.62 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.453;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.9643;MLEAC=1;MLEAF=0.125;MQ=28.19;MQ0=0;MQRankSum=2.650;QD=3.83;ReadPosRankSum=1.225;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:33:0,33,323 0/1:10,4:14:89:89,0,140 0/0:7,0:7:15:0,15,152 0/0:1,0:1:3:0,3,23 +chr1 71093897 rs1334994 A G 31.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=7;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=15.43;MQ0=0;MQRankSum=1.026;QD=7.75;ReadPosRankSum=1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:2:3:34,3,0 1/1:1,1:2:3:30,3,0 +chr1 71126822 rs2820532 G A 306.40 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.501;DB;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.1680;MLEAC=7;MLEAF=0.875;MQ=21.74;MQ0=0;MQRankSum=2.643;QD=5.67;ReadPosRankSum=2.055;SB=-1.093e+02 GT:AD:DP:GQ:PL 0/1:7,5:12:22:52,0,22 1/1:5,6:12:9:87,9,0 1/1:8,14:22:15:178,15,0 1/1:5,3:8:3:32,3,0 +chr1 72740811 . T A 281.52 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.853;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=2.9344;MLEAC=4;MLEAF=0.667;MQ=19.57;MQ0=0;MQRankSum=2.124;QD=8.28;ReadPosRankSum=2.997;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,8:11:15:138,15,0 0/1:6,5:11:44:123,0,44 0/1:7,4:11:35:62,0,35 ./. +chr1 74701950 rs532221 T A 491.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.700;DB;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.8943;MLEAC=3;MLEAF=0.375;MQ=29.87;MQ0=0;MQRankSum=-0.526;QD=7.12;ReadPosRankSum=0.428;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,6:31:99:126,0,459 0/1:15,5:20:99:127,0,228 0/1:8,10:18:92:281,0,92 0/0:5,0:5:9:0,9,109 +chr1 74801768 . T G 281.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.737;DP=146;Dels=0.00;FS=108.242;HaplotypeScore=3.9291;MLEAC=4;MLEAF=0.500;MQ=35.38;MQ0=0;MQRankSum=-2.829;QD=1.93;ReadPosRankSum=2.168;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:37,9:46:99:124,0,1161 0/1:30,8:38:99:162,0,888 0/1:41,5:46:16:16,0,1190 0/1:14,2:16:22:22,0,297 +chr1 74905202 . T A 300.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.346;DP=183;Dels=0.00;FS=86.343;HaplotypeScore=9.6425;MLEAC=4;MLEAF=0.500;MQ=36.00;MQ0=0;MQRankSum=-3.448;QD=1.64;ReadPosRankSum=-1.350;SB=-2.344e-01 GT:AD:DP:GQ:PL 0/1:38,4:42:12:12,0,1149 0/1:45,7:52:61:61,0,1088 0/1:46,8:55:99:100,0,1388 0/1:25,8:33:99:170,0,627 +chr1 74930224 . A C 46.11 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.973;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.4941;MLEAC=2;MLEAF=0.250;MQ=36.60;MQ0=0;MQRankSum=-2.453;QD=2.20;ReadPosRankSum=2.527;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,1:12:8:0,8,387 0/1:14,4:18:66:66,0,325 0/0:19,0:19:36:0,36,454 0/1:2,1:3:20:21,0,20 +chr1 75708529 rs1856128 A T 679.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.636;DB;DP=92;Dels=0.00;FS=2.904;HaplotypeScore=1.4084;MLEAC=3;MLEAF=0.375;MQ=29.02;MQ0=0;MQRankSum=1.400;QD=10.46;ReadPosRankSum=-1.814;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:14,9:23:99:223,0,327 0/0:27,0:27:63:0,63,702 0/1:22,9:31:99:219,0,471 0/1:2,9:11:27:281,0,27 +chr1 76252011 rs1146634 G A 2946.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.233;DB;DP=126;Dels=0.00;FS=11.185;HaplotypeScore=1.8314;MLEAC=6;MLEAF=0.750;MQ=39.05;MQ0=0;MQRankSum=-1.328;QD=23.39;ReadPosRankSum=2.880;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:24,7:31:99:192,0,840 0/1:14,14:28:99:490,0,330 1/1:3,33:36:43:1250,43,0 1/1:3,27:31:56:1061,56,0 +chr1 78184310 . T C 55.74 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.351;DP=50;Dels=0.00;FS=2.606;HaplotypeScore=10.1184;MLEAC=4;MLEAF=0.500;MQ=18.89;MQ0=0;MQRankSum=0.742;QD=1.43;ReadPosRankSum=0.781;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,1:11:6:0,6,49 1/1:10,5:15:6:49,6,0 0/1:17,2:19:31:31,0,92 0/1:4,1:5:20:20,0,40 +chr1 78392079 . T A 39.58 . AC=1;AF=0.167;AN=6;BaseQRankSum=1.820;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.5641;MLEAC=1;MLEAF=0.167;MQ=26.25;MQ0=0;MQRankSum=0.891;QD=3.96;ReadPosRankSum=-1.201;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:12:0,12,106 0/1:6,4:10:20:74,0,20 0/0:12,0:12:9:0,9,80 ./. +chr1 78401724 . C A 199.64 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.583;DP=78;Dels=0.03;FS=6.009;HaplotypeScore=17.8991;MLEAC=5;MLEAF=0.625;MQ=23.62;MQ0=0;MQRankSum=-1.108;QD=2.56;ReadPosRankSum=1.625;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,6:21:53:53,0,72 0/1:21,7:29:99:147,0,100 0/1:11,4:15:20:20,0,51 1/1:8,3:11:3:22,3,0 +chr1 78420917 . T G 63.25 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.208;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=4.4258;MLEAC=2;MLEAF=0.250;MQ=25.86;MQ0=0;MQRankSum=-1.004;QD=1.71;ReadPosRankSum=-0.852;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:21:0,21,215 0/1:16,3:19:44:44,0,208 0/1:14,3:17:60:60,0,132 0/0:2,0:2:6:0,6,49 +chr1 78430080 . C T 103.37 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.132;DP=57;Dels=0.02;FS=5.295;HaplotypeScore=2.6956;MLEAC=3;MLEAF=0.375;MQ=29.85;MQ0=0;MQRankSum=-3.653;QD=1.95;ReadPosRankSum=1.055;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,1:17:11:11,0,197 0/1:13,5:18:62:62,0,330 0/1:12,6:18:72:72,0,281 0/0:2,1:3:6:0,6,77 +chr1 78585202 . C G 44.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.798;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.4463;MLEAC=2;MLEAF=0.250;MQ=31.73;MQ0=0;MQRankSum=-0.678;QD=0.93;ReadPosRankSum=0.855;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:64:64,0,226 0/1:27,3:30:22:22,0,361 0/0:31,1:32:27:0,27,584 0/0:15,1:16:36:0,36,401 +chr1 84645017 . T G 141.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.222;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.6788;MLEAC=4;MLEAF=0.500;MQ=26.99;MQ0=0;MQRankSum=-1.041;QD=3.73;ReadPosRankSum=2.625;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,4:9:75:106,0,75 0/1:12,1:14:5:5,0,261 0/1:7,3:10:49:49,0,107 0/1:3,1:5:22:23,0,22 +chr1 84988213 . TC T 117.77 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.849;DP=127;FS=5.020;HaplotypeScore=51.4996;MLEAC=3;MLEAF=0.375;MQ=22.15;MQ0=0;MQRankSum=0.159;QD=1.32;ReadPosRankSum=-2.781;SB=-1.458e-03 GT:AD:DP:GQ:PL 0/1:37,4:26:75:75,0,453 0/1:30,6:27:60:60,0,568 0/0:36,1:28:65:0,65,874 0/1:8,2:4:19:35,0,19 +chr1 85589939 rs11356964 GT G 3910 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.952;DB;DP=179;FS=3.570;HaplotypeScore=20.3553;MLEAC=6;MLEAF=0.750;MQ=38.68;MQ0=0;MQRankSum=-3.078;QD=21.84;RPA=2,1;RU=T;ReadPosRankSum=2.264;SB=-7.510e+02;STR GT:AD:DP:GQ:PL 0/1:39,17:57:99:597,0,1348 0/1:32,13:47:99:416,0,1211 1/1:3,36:39:99:1539,111,0 1/1:2,32:35:96:1358,96,0 +chr1 85648620 rs817443 C T 7706.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.731;DB;DP=234;Dels=0.03;FS=5.309;HaplotypeScore=2.5742;MLEAC=8;MLEAF=1.00;MQ=33.96;MQ0=0;MQRankSum=0.915;QD=32.93;ReadPosRankSum=2.740;SB=-3.296e+03 GT:AD:DP:GQ:PL 1/1:3,58:61:99:2005,135,0 1/1:1,68:69:99:2359,167,0 1/1:1,66:67:99:2390,187,0 1/1:4,25:29:75:952,75,0 +chr1 85815943 . A T 63.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.234;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=18.2861;MLEAC=2;MLEAF=0.250;MQ=28.03;MQ0=0;MQRankSum=-4.258;QD=0.99;ReadPosRankSum=5.003;SB=0.619 GT:AD:DP:GQ:PL 0/0:38,5:43:7:0,7,989 0/1:31,8:39:91:91,0,607 0/0:42,6:48:12:0,12,925 0/1:18,5:24:12:12,0,334 +chr1 86249911 rs313725 A G 4584.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.402;DB;DP=141;Dels=0.00;FS=1.851;HaplotypeScore=2.8905;MLEAC=8;MLEAF=1.00;MQ=35.16;MQ0=0;MQRankSum=3.523;QD=32.51;ReadPosRankSum=1.429;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:6,30:36:63:1057,63,0 1/1:5,32:37:90:1187,90,0 1/1:2,42:44:99:1545,123,0 1/1:3,21:24:60:795,60,0 +chr1 86453334 . A T 185.53 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.230;DP=77;Dels=0.01;FS=10.670;HaplotypeScore=7.7678;MLEAC=2;MLEAF=0.333;MQ=27.85;MQ0=0;MQRankSum=0.076;QD=3.20;ReadPosRankSum=1.047;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,4:24:94:94,0,234 0/0:16,0:16:12:0,12,150 0/1:27,6:33:99:130,0,251 ./. +chr1 86591837 rs11161747 G A 3146.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.390;DB;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.4956;MLEAC=7;MLEAF=0.875;MQ=39.83;MQ0=0;MQRankSum=0.405;QD=29.13;ReadPosRankSum=-0.396;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:5,20:25:60:834,60,0 0/1:17,16:33:99:550,0,488 1/1:2,28:30:43:1103,43,0 1/1:3,17:20:51:704,51,0 +chr1 86611702 rs2892908 T C 233.14 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.065;DB;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.2395;MLEAC=1;MLEAF=0.125;MQ=33.81;MQ0=0;MQRankSum=0.063;QD=9.71;ReadPosRankSum=0.407;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:29,0:29:81:0,81,999 0/1:15,9:24:99:269,0,391 0/0:23,0:23:69:0,69,795 0/0:3,0:3:9:0,9,103 +chr1 86820267 rs1182098 C T 2791.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.592;DB;DP=145;Dels=0.01;FS=2.226;HaplotypeScore=0.9910;MLEAC=5;MLEAF=0.625;MQ=38.91;MQ0=0;MQRankSum=-1.084;QD=19.25;ReadPosRankSum=1.862;SB=-1.153e+03 GT:AD:DP:GQ:PL 0/1:22,17:39:99:565,0,666 1/1:3,37:40:82:1435,82,0 0/1:33,22:55:99:702,0,1061 0/1:5,4:10:99:135,0,127 +chr1 87043728 rs181686491 G A 691.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.576;DB;DP=70;Dels=0.00;FS=7.377;HaplotypeScore=0.7391;MLEAC=3;MLEAF=0.375;MQ=37.36;MQ0=0;MQRankSum=-3.080;QD=13.84;ReadPosRankSum=0.271;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:9,9:18:99:288,0,285 0/0:20,0:20:57:0,57,759 0/1:12,7:19:99:184,0,452 0/1:5,8:13:74:263,0,74 +chr1 87101278 . G T 52.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.668;DP=91;Dels=0.00;FS=7.622;HaplotypeScore=0.7439;MLEAC=2;MLEAF=0.250;MQ=31.48;MQ0=0;MQRankSum=-1.910;QD=1.50;ReadPosRankSum=-2.825;SB=0.379 GT:AD:DP:GQ:PL 0/0:26,1:27:17:0,17,517 0/1:25,5:30:63:63,0,352 0/0:29,0:29:42:0,42,460 0/1:4,1:5:31:31,0,33 +chr1 87101375 rs2292830 C G 850.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.496;DB;DP=175;Dels=0.00;FS=11.573;HaplotypeScore=0.2496;MLEAC=2;MLEAF=0.250;MQ=35.09;MQ0=0;MQRankSum=-1.368;QD=9.25;ReadPosRankSum=0.464;SB=-3.519e+02 GT:AD:DP:GQ:PL 0/1:29,15:44:99:412,0,574 0/1:32,16:48:99:480,0,920 0/0:59,0:59:99:0,159,1940 0/0:24,0:24:60:0,60,785 +chr1 87570289 . C A 113.09 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.448;DP=109;Dels=0.02;FS=82.375;HaplotypeScore=5.1695;MLEAC=3;MLEAF=0.375;MQ=32.99;MQ0=0;MQRankSum=-2.560;QD=1.14;ReadPosRankSum=1.786;SB=-2.659e-01 GT:AD:DP:GQ:PL 0/1:26,7:33:67:67,0,556 0/1:23,6:29:83:83,0,437 0/1:32,3:35:4:4,0,840 0/0:9,0:10:12:0,12,123 +chr1 89408578 . A T 256.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.334;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.8810;MLEAC=4;MLEAF=0.500;MQ=27.45;MQ0=0;MQRankSum=-1.831;QD=4.84;ReadPosRankSum=3.675;SB=-4.718e-02 GT:AD:DP:GQ:PL 0/1:13,6:19:99:106,0,249 0/1:13,4:17:87:87,0,203 0/1:7,5:12:67:89,0,67 0/1:4,1:5:17:17,0,76 +chr1 89427162 . T C 536.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.772;DP=162;Dels=0.02;FS=55.450;HaplotypeScore=10.2180;MLEAC=4;MLEAF=0.500;MQ=34.63;MQ0=0;MQRankSum=-3.840;QD=3.31;ReadPosRankSum=2.517;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:36,5:41:72:72,0,874 0/1:38,13:51:99:284,0,830 0/1:41,9:50:99:158,0,993 0/1:13,3:16:65:65,0,234 +chr1 89520636 rs10922555 G A 187.62 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.549;DB;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.3222;MLEAC=4;MLEAF=0.667;MQ=9.90;MQ0=0;MQRankSum=1.844;QD=2.44;ReadPosRankSum=-0.114;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,7:32:24:26,0,24 1/1:1,21:22:9:95,9,0 0/1:4,18:23:10:107,0,10 ./. +chr1 89847372 rs4658359 G T 1127.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.983;DB;DP=171;Dels=0.01;FS=25.620;HaplotypeScore=6.5554;MLEAC=4;MLEAF=0.500;MQ=27.00;MQ0=0;MQRankSum=0.298;QD=8.48;ReadPosRankSum=1.103;SB=-7.799e+01 GT:AD:DP:GQ:PL 1/1:11,21:32:36:397,36,0 0/0:38,0:38:78:0,78,834 0/1:34,20:54:99:418,0,518 0/1:29,16:45:99:361,0,369 +chr1 89887094 rs6665989 A C 52.74 . AC=4;AF=1.00;AN=4;BaseQRankSum=3.944;DB;DP=58;Dels=0.02;FS=5.166;HaplotypeScore=2.4633;MLEAC=5;MLEAF=1.25;MQ=9.27;MQ0=0;MQRankSum=2.623;QD=1.95;ReadPosRankSum=-0.359;SB=22.76 GT:AD:DP:GQ:PL 1/1:1,6:7:6:43,6,0 ./. 1/1:4,16:20:6:44,6,0 ./. +chr1 89887734 . C G 49.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.435;DP=83;Dels=0.00;FS=5.439;HaplotypeScore=1.5938;MLEAC=4;MLEAF=0.500;MQ=15.00;MQ0=0;MQRankSum=2.925;QD=0.60;ReadPosRankSum=0.959;SB=-2.664e+01 GT:AD:DP:GQ:PL 0/1:19,2:21:15:15,0,67 0/1:20,3:23:34:34,0,56 0/1:18,2:20:25:25,0,65 0/1:17,2:19:18:18,0,55 +chr1 90179578 . T C 60 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.233;DP=172;Dels=0.00;FS=35.595;HaplotypeScore=2.2906;MLEAC=3;MLEAF=0.375;MQ=36.45;MQ0=0;MQRankSum=-2.217;QD=0.47;ReadPosRankSum=1.266;SB=-2.055e-01 GT:AD:DP:GQ:PL 0/1:41,5:47:57:57,0,986 0/1:39,5:44:31:31,0,1050 0/0:41,1:43:75:0,75,1158 0/1:34,3:38:15:15,0,942 +chr1 90399128 . C T 61.57 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.786;DP=137;Dels=0.00;FS=31.480;HaplotypeScore=2.6414;MLEAC=3;MLEAF=0.375;MQ=36.58;MQ0=0;MQRankSum=-4.127;QD=0.62;ReadPosRankSum=2.981;SB=-7.878e-01 GT:AD:DP:GQ:PL 0/0:37,0:37:87:0,87,1149 0/1:36,6:42:71:71,0,924 0/1:41,5:46:9:9,0,1096 0/1:9,3:12:24:24,0,224 +chr1 90400261 . A T 147.36 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.544;DP=136;Dels=0.02;FS=67.259;HaplotypeScore=20.7452;MLEAC=3;MLEAF=0.375;MQ=28.55;MQ0=0;MQRankSum=-2.510;QD=1.23;ReadPosRankSum=2.520;SB=23.47 GT:AD:DP:GQ:PL 0/1:29,8:37:72:72,0,511 0/1:32,6:38:73:73,0,409 0/1:35,4:42:45:45,0,527 0/0:13,2:16:12:0,12,140 +chr1 91405096 . C T 414.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.437;DP=162;Dels=0.01;FS=44.011;HaplotypeScore=3.2295;MLEAC=3;MLEAF=0.375;MQ=34.31;MQ0=0;MQRankSum=-3.389;QD=3.64;ReadPosRankSum=-1.469;SB=-1.202e+01 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,141,1753 0/1:35,8:43:99:129,0,993 0/1:40,12:52:99:300,0,1020 0/1:16,2:18:29:29,0,346 +chr1 91818792 . A C 289.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.006;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.9127;MLEAC=1;MLEAF=0.125;MQ=35.74;MQ0=0;MQRankSum=-2.863;QD=7.44;ReadPosRankSum=1.702;SB=-8.001e+01 GT:AD:DP:GQ:PL 0/1:25,14:39:99:326,0,795 0/0:46,0:46:99:0,132,1674 0/0:50,0:50:99:0,150,1903 0/0:12,0:12:27:0,27,338 +chr1 92200634 rs11165377 C T 282.59 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.634;DB;DP=21;Dels=0.05;FS=2.831;HaplotypeScore=0.4159;MLEAC=5;MLEAF=0.625;MQ=27.11;MQ0=0;MQRankSum=-0.872;QD=13.46;ReadPosRankSum=-0.555;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:3,3:6:60:64,0,60 0/1:3,7:10:67:167,0,67 0/1:1,2:3:30:64,0,30 1/1:0,1:1:3:30,3,0 +chr1 92223976 rs284176 A G 178.11 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=7;Dels=0.00;FS=7.782;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=35.62;MQ0=0;MQRankSum=0.736;QD=25.44;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,3:5:9:129,9,0 ./. ./. 1/1:0,2:2:6:84,6,0 +chr1 92285359 rs4658275 G A 119.27 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.380;DB;DP=8;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=6;MLEAF=0.750;MQ=31.02;MQ0=0;MQRankSum=0.720;QD=19.88;ReadPosRankSum=0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:39,3,0 0/0:2,0:2:3:0,3,43 1/1:0,2:2:6:79,6,0 1/1:1,1:2:3:43,3,0 +chr1 92292502 rs2799529 T C 88.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.731;DB;DP=9;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=23.05;MQ0=0;MQRankSum=0.731;QD=11.03;ReadPosRankSum=0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:39,3,0 ./. 1/1:1,2:3:3:42,3,0 1/1:2,1:3:3:42,3,0 +chr1 92430318 . C T 64.70 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.651;DP=97;Dels=0.00;FS=60.935;HaplotypeScore=4.0149;MLEAC=2;MLEAF=0.250;MQ=33.88;MQ0=0;MQRankSum=-3.224;QD=1.47;ReadPosRankSum=-2.105;SB=-2.343e+00 GT:AD:DP:GQ:PL 0/0:20,1:21:13:0,13,453 0/1:29,5:34:58:58,0,782 0/0:30,2:32:25:0,25,780 0/1:8,2:10:48:48,0,102 +chr1 92446398 rs2303967 T A 1645.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.514;DB;DP=115;Dels=0.03;FS=2.637;HaplotypeScore=2.1966;MLEAC=4;MLEAF=0.500;MQ=35.55;MQ0=0;MQRankSum=-0.283;QD=19.36;ReadPosRankSum=0.789;SB=-6.490e+02 GT:AD:DP:GQ:PL 0/0:30,0:30:90:0,90,1027 1/1:4,31:35:74:1143,74,0 0/1:21,14:35:99:430,0,694 0/1:8,4:12:99:121,0,228 +chr1 92591805 . A T 44.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.773;DP=74;Dels=0.00;FS=16.427;HaplotypeScore=0.5339;MLEAC=1;MLEAF=0.125;MQ=28.63;MQ0=0;MQRankSum=-0.023;QD=2.75;ReadPosRankSum=-0.493;SB=0.521 GT:AD:DP:GQ:PL 0/0:17,0:17:30:0,30,349 0/0:21,1:22:23:0,23,582 0/0:19,0:19:21:0,21,254 0/1:12,4:16:80:80,0,205 +chr1 92786179 . A C 61 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.823;DP=95;Dels=0.00;FS=34.958;HaplotypeScore=3.5736;MLEAC=1;MLEAF=0.125;MQ=32.09;MQ0=0;MQRankSum=-1.545;QD=1.97;ReadPosRankSum=-1.404;SB=-1.983e+00 GT:AD:DP:GQ:PL 0/0:27,2:29:22:0,22,559 0/0:20,1:21:28:0,28,589 0/1:25,5:31:97:97,0,462 0/0:14,0:14:39:0,39,481 +chr1 93089823 rs7514716 T C 5340.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.059;DB;DP=165;Dels=0.00;FS=1.098;HaplotypeScore=3.6693;MLEAC=8;MLEAF=1.00;MQ=34.29;MQ0=0;MQRankSum=3.254;QD=32.36;ReadPosRankSum=2.948;SB=-2.457e+03 GT:AD:DP:GQ:PL 1/1:8,39:47:40:1391,40,0 1/1:5,43:48:99:1608,99,0 1/1:4,50:54:99:1787,126,0 1/1:1,15:16:45:554,45,0 +chr1 93113058 rs11164788 A G 40.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.950;DB;DP=134;Dels=0.01;FS=4.457;HaplotypeScore=0.4579;MLEAC=1;MLEAF=0.125;MQ=20.35;MQ0=0;MQRankSum=0.572;QD=1.18;ReadPosRankSum=2.412;SB=-1.135e-02 GT:AD:DP:GQ:PL 0/0:42,0:42:42:0,42,513 0/1:24,10:34:76:76,0,346 0/0:42,0:42:39:0,39,439 0/0:15,0:15:15:0,15,140 +chr1 93128854 rs10747450 A G 87.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.731;DB;DP=7;Dels=0.00;FS=4.771;HaplotypeScore=0.2217;MLEAC=6;MLEAF=1.00;MQ=29.84;MQ0=0;MQRankSum=0.731;QD=14.54;ReadPosRankSum=-0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:42,3,0 1/1:0,1:1:3:39,3,0 1/1:1,2:3:3:41,3,0 ./. +chr1 93160002 rs34202284 G A 316.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.548;DB;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.4864;MLEAC=2;MLEAF=0.250;MQ=35.98;MQ0=0;MQRankSum=-3.224;QD=7.73;ReadPosRankSum=1.266;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,8:20:99:201,0,383 0/0:25,0:25:75:0,75,970 0/1:15,6:21:99:156,0,477 0/0:9,1:10:3:0,3,292 +chr1 93299230 . C G 168.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.493;DP=200;Dels=0.03;FS=7.746;HaplotypeScore=22.0863;MLEAC=4;MLEAF=0.500;MQ=28.08;MQ0=0;MQRankSum=-3.080;QD=0.84;ReadPosRankSum=-0.254;SB=-7.947e+01 GT:AD:DP:GQ:PL 0/1:46,7:57:81:81,0,587 0/1:58,6:65:63:63,0,796 0/1:45,8:56:32:32,0,738 0/1:15,2:17:35:35,0,129 +chr1 93646455 rs115779049 T G 71.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.757;DB;DP=47;Dels=0.00;FS=2.722;HaplotypeScore=3.3076;MLEAC=3;MLEAF=0.375;MQ=29.51;MQ0=0;MQRankSum=-1.120;QD=1.89;ReadPosRankSum=2.270;SB=-1.815e-01 GT:AD:DP:GQ:PL 0/1:9,1:10:11:11,0,95 0/1:10,2:12:44:44,0,50 0/0:9,0:9:9:0,9,125 0/1:12,4:16:41:59,0,41 +chr1 93683543 rs506556 C G 671.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.342;DB;DP=63;Dels=0.00;FS=5.831;HaplotypeScore=0.4547;MLEAC=4;MLEAF=0.500;MQ=34.70;MQ0=0;MQRankSum=-2.115;QD=10.66;ReadPosRankSum=-0.537;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,10:20:99:269,0,297 0/1:6,10:16:99:300,0,166 0/1:15,4:19:89:89,0,506 0/1:6,2:8:56:56,0,175 +chr1 94058016 . T C 245.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.127;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7968;MLEAC=3;MLEAF=0.375;MQ=34.94;MQ0=0;MQRankSum=1.141;QD=4.09;ReadPosRankSum=0.296;SB=-2.033e-01 GT:AD:DP:GQ:PL 0/1:16,4:20:99:104,0,293 0/0:20,0:20:48:0,48,594 0/1:16,2:18:12:12,0,243 0/1:16,6:22:99:172,0,251 +chr1 94362318 . A G 66.30 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.145;DP=209;Dels=0.00;FS=90.474;HaplotypeScore=0.7196;MLEAC=1;MLEAF=0.125;MQ=34.61;MQ0=0;MQRankSum=-0.397;QD=2.29;ReadPosRankSum=-0.127;SB=-6.720e+00 GT:AD:DP:GQ:PL 0/0:59,4:63:6:0,6,1630 0/0:56,2:58:71:0,71,1468 0/0:56,3:59:26:0,26,1280 0/1:24,5:29:99:102,0,577 +chr1 94972069 . A C 171.30 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.602;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9444;MLEAC=4;MLEAF=0.500;MQ=29.91;MQ0=0;MQRankSum=4.081;QD=2.22;ReadPosRankSum=-3.535;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,2:22:19:19,0,176 0/1:20,1:21:7:7,0,253 0/1:18,5:23:99:124,0,334 0/1:9,2:11:63:63,0,92 +chr1 97544771 rs290855 T C 656.02 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.275;DB;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=5.8813;MLEAC=7;MLEAF=0.875;MQ=23.47;MQ0=0;MQRankSum=1.293;QD=18.74;ReadPosRankSum=0.669;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:12:130,12,0 1/1:1,12:13:30:293,30,0 1/1:2,8:10:24:233,24,0 0/1:4,2:6:17:44,0,17 +chr1 100163838 . T A 373.55 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.912;DP=119;Dels=0.00;FS=20.392;HaplotypeScore=6.4132;MLEAC=5;MLEAF=0.625;MQ=16.12;MQ0=0;MQRankSum=4.427;QD=3.14;ReadPosRankSum=2.779;SB=1.30 GT:AD:DP:GQ:PL 0/1:25,4:29:67:96,0,67 0/1:23,10:33:99:127,0,107 0/1:26,10:36:99:116,0,145 1/1:14,7:21:9:79,9,0 +chr1 100163893 . T C 75.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.557;DP=135;Dels=0.00;FS=11.993;HaplotypeScore=1.7870;MLEAC=3;MLEAF=0.375;MQ=13.52;MQ0=0;MQRankSum=3.432;QD=0.78;ReadPosRankSum=-0.923;SB=-2.216e-02 GT:AD:DP:GQ:PL 0/1:41,2:43:37:37,0,70 0/0:36,0:37:3:0,3,37 0/1:34,1:35:18:18,0,74 0/1:18,2:20:17:62,0,17 +chr1 100327183 rs2230305 T C 196.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.349;DB;DP=162;Dels=0.00;FS=2.706;HaplotypeScore=0.4614;MLEAC=1;MLEAF=0.125;MQ=34.79;MQ0=0;MQRankSum=-3.035;QD=4.92;ReadPosRankSum=1.327;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,162,2019 0/1:28,12:40:99:233,0,873 0/0:51,0:51:99:0,150,1827 0/0:15,0:15:45:0,45,564 +chr1 100472604 rs534252 A G 403.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.345;DB;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7466;MLEAC=1;MLEAF=0.125;MQ=34.54;MQ0=0;MQRankSum=-2.680;QD=11.88;ReadPosRankSum=-0.898;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,0:34:90:0,90,1150 0/1:18,16:34:99:440,0,586 0/0:40,0:40:99:0,120,1482 0/0:16,0:16:45:0,45,547 +chr1 100535292 . C G 194.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.941;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=16.8922;MLEAC=3;MLEAF=0.375;MQ=27.73;MQ0=0;MQRankSum=0.426;QD=3.00;ReadPosRankSum=0.448;SB=0.986 GT:AD:DP:GQ:PL 0/1:22,4:26:86:86,0,288 0/0:21,0:22:21:0,21,235 0/1:15,6:22:99:130,0,231 0/1:14,1:16:22:22,0,140 +chr1 100609767 . T G 93.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.090;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6551;MLEAC=3;MLEAF=0.375;MQ=26.60;MQ0=0;MQRankSum=2.031;QD=1.81;ReadPosRankSum=0.737;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:69:69,0,312 0/1:13,2:15:48:48,0,102 0/1:18,1:19:18:18,0,182 0/0:11,0:11:3:0,3,28 +chr1 100731820 rs57327535 G A 842.58 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.681;DB;DP=36;Dels=0.00;FS=6.105;HaplotypeScore=1.5224;MLEAC=8;MLEAF=1.00;MQ=28.78;MQ0=0;MQRankSum=2.917;QD=23.40;ReadPosRankSum=-1.208;SB=-1.338e-02 GT:AD:DP:GQ:PL 1/1:3,4:7:12:134,12,0 0/1:3,8:11:4:253,0,4 1/1:1,11:13:30:360,30,0 1/1:1,4:5:12:136,12,0 +chr1 100746846 . T A 51.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.506;DP=130;Dels=0.00;FS=9.846;HaplotypeScore=7.9264;MLEAC=3;MLEAF=0.375;MQ=29.64;MQ0=0;MQRankSum=-1.417;QD=0.55;ReadPosRankSum=-2.502;SB=-7.911e-01 GT:AD:DP:GQ:PL 0/0:35,2:37:5:0,5,323 0/1:33,3:37:54:54,0,365 0/1:43,3:46:12:12,0,757 0/1:8,1:10:27:27,0,56 +chr1 100756945 . T G 32.87 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.125;DP=106;Dels=0.04;FS=0.000;HaplotypeScore=24.8353;MLEAC=2;MLEAF=0.250;MQ=23.52;MQ0=0;MQRankSum=1.913;QD=0.48;ReadPosRankSum=-0.519;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,0:28:18:0,18,183 0/1:31,2:33:34:34,0,184 0/1:29,2:31:39:39,0,217 0/0:10,0:10:3:0,3,25 +chr1 101437925 . T C 190.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.289;DP=33;Dels=0.00;FS=3.160;HaplotypeScore=4.5745;MLEAC=5;MLEAF=0.625;MQ=25.65;MQ0=0;MQRankSum=1.826;QD=6.35;ReadPosRankSum=-0.437;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,4:9:12:116,12,0 0/1:7,2:9:10:10,0,65 0/1:6,6:12:24:109,0,24 0/0:2,0:3:3:0,3,23 +chr1 103364396 rs1763344 C T 632.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.328;DB;DP=78;Dels=0.00;FS=1.569;HaplotypeScore=0.4850;MLEAC=4;MLEAF=0.500;MQ=29.72;MQ0=0;MQRankSum=-2.276;QD=11.10;ReadPosRankSum=-1.693;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:1,19:20:48:525,48,0 0/0:21,0:21:63:0,63,723 0/1:14,3:17:30:30,0,379 0/1:14,6:20:99:126,0,438 +chr1 103412497 . G T 340.34 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.202;DP=81;Dels=0.01;FS=5.499;HaplotypeScore=5.5207;MLEAC=5;MLEAF=0.625;MQ=24.96;MQ0=0;MQRankSum=1.352;QD=4.20;ReadPosRankSum=1.012;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,6:23:99:140,0,128 0/1:16,6:22:65:107,0,65 0/1:20,3:23:63:63,0,130 1/1:9,3:12:6:74,6,0 +chr1 103445223 rs2622846 G A 91.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.277;DB;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.2333;MLEAC=1;MLEAF=0.125;MQ=35.35;MQ0=0;MQRankSum=-1.089;QD=4.79;ReadPosRankSum=0.351;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,5:19:99:127,0,434 0/0:26,0:26:78:0,78,1013 0/0:35,0:35:99:0,102,1219 0/0:7,0:7:12:0,12,155 +chr1 104116559 . A C 47.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.527;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.4619;MLEAC=3;MLEAF=0.375;MQ=8.39;MQ0=0;MQRankSum=4.123;QD=0.42;ReadPosRankSum=-4.180;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:53,2:55:14:14,0,44 0/0:56,2:58:6:0,6,51 0/1:37,3:40:29:29,0,69 0/1:13,5:18:23:46,0,23 +chr1 104798629 rs4633297 G A 34.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=8;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=15.91;MQ0=0;MQRankSum=1.026;QD=6.80;ReadPosRankSum=-1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,1:3:3:28,3,0 1/1:1,1:2:3:39,3,0 ./. +chr1 106240803 . T C 179.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.844;DP=99;Dels=0.01;FS=77.367;HaplotypeScore=9.9020;MLEAC=3;MLEAF=0.375;MQ=14.61;MQ0=0;MQRankSum=3.391;QD=2.12;ReadPosRankSum=2.727;SB=-1.117e-02 GT:AD:DP:GQ:PL 0/1:21,9:31:49:85,0,49 0/1:15,12:27:58:110,0,58 0/1:18,8:26:21:26,0,21 0/0:10,4:14:3:0,3,34 +chr1 107998206 . A T 32 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.700;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=1.7052;MLEAC=1;MLEAF=0.125;MQ=35.61;MQ0=0;MQRankSum=-3.069;QD=0.91;ReadPosRankSum=-0.907;SB=-4.403e-03 GT:AD:DP:GQ:PL 0/1:29,5:34:68:68,0,623 0/0:30,0:30:75:0,75,941 0/0:46,3:49:28:0,28,1241 0/0:24,1:25:29:0,29,709 +chr1 107998298 rs151001860 G A 185.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.353;DB;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3008;MLEAC=1;MLEAF=0.125;MQ=38.43;MQ0=0;MQRankSum=0.125;QD=8.09;ReadPosRankSum=2.016;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,7:23:99:222,0,483 0/0:31,0:31:84:0,84,1066 0/0:36,0:36:99:0,99,1276 0/0:32,0:34:90:0,90,1197 +chr1 108003121 . A T 401.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.373;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=9.0083;MLEAC=4;MLEAF=0.500;MQ=28.21;MQ0=0;MQRankSum=-0.709;QD=5.14;ReadPosRankSum=5.427;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,5:21:99:115,0,148 0/1:13,5:19:62:80,0,62 0/1:19,8:27:75:240,0,75 0/1:7,3:10:8:8,0,99 +chr1 108507302 . G T 116.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.658;DP=49;Dels=0.04;FS=35.682;HaplotypeScore=2.4518;MLEAC=3;MLEAF=0.375;MQ=28.63;MQ0=0;MQRankSum=-0.349;QD=3.06;ReadPosRankSum=0.553;SB=2.04 GT:AD:DP:GQ:PL 0/1:5,4:9:69:69,0,87 0/1:15,2:17:11:11,0,269 0/0:11,0:11:30:0,30,359 0/1:7,3:10:79:79,0,104 +chr1 108735260 . G T 56.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.803;DP=132;Dels=0.03;FS=2.267;HaplotypeScore=36.5702;MLEAC=3;MLEAF=0.375;MQ=22.17;MQ0=0;MQRankSum=2.949;QD=0.54;ReadPosRankSum=-2.874;SB=-4.579e-01 GT:AD:DP:GQ:PL 0/1:29,3:32:10:10,0,454 0/1:27,3:30:38:38,0,234 0/1:33,4:38:51:51,0,679 0/0:28,0:28:27:0,27,228 +chr1 109261498 . T A 34 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.771;DP=315;Dels=0.00;FS=80.335;HaplotypeScore=4.2332;MLEAC=1;MLEAF=0.125;MQ=37.56;MQ0=0;MQRankSum=-0.440;QD=0.47;ReadPosRankSum=1.102;SB=-5.525e+00 GT:AD:DP:GQ:PL 0/0:89,6:95:25:0,25,2544 0/1:66,7:73:70:70,0,1929 0/0:91,3:94:99:0,157,2848 0/0:50,3:53:26:0,26,1431 +chr1 109309608 . T G 152.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.231;DP=44;Dels=0.00;FS=27.185;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=32.66;MQ0=0;MQRankSum=-0.137;QD=5.43;ReadPosRankSum=-1.504;SB=1.06 GT:AD:DP:GQ:PL 0/1:13,4:17:99:114,0,241 0/0:13,0:13:12:0,12,131 0/1:8,3:11:79:79,0,110 0/0:3,0:3:9:0,9,127 +chr1 109394684 . C T 121.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.246;DP=147;Dels=0.00;FS=11.916;HaplotypeScore=29.0284;MLEAC=4;MLEAF=0.500;MQ=29.41;MQ0=0;MQRankSum=0.346;QD=0.83;ReadPosRankSum=-0.094;SB=-4.312e-02 GT:AD:DP:GQ:PL 0/1:36,4:40:80:80,0,393 0/1:35,3:38:36:36,0,302 0/1:45,4:49:28:28,0,821 0/1:18,2:20:20:20,0,256 +chr1 109704444 . G T 107.36 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.510;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.8520;MLEAC=4;MLEAF=0.500;MQ=30.70;MQ0=0;MQRankSum=-2.467;QD=1.36;ReadPosRankSum=3.030;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,4:30:63:63,0,606 0/1:12,1:13:1:1,0,279 0/1:17,1:18:4:4,0,286 0/1:13,5:18:78:78,0,233 +chr1 109715029 . T G 70.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.703;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9550;MLEAC=3;MLEAF=0.375;MQ=34.00;MQ0=0;MQRankSum=-3.823;QD=1.35;ReadPosRankSum=3.179;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,4:18:42:42,0,397 0/1:14,4:18:50:50,0,260 0/1:14,2:16:21:21,0,357 0/0:6,0:6:9:0,9,93 +chr1 109794690 . T A 43.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.149;DP=206;Dels=0.01;FS=45.210;HaplotypeScore=17.0661;MLEAC=1;MLEAF=0.125;MQ=29.88;MQ0=0;MQRankSum=-0.738;QD=0.83;ReadPosRankSum=0.553;SB=-4.307e+00 GT:AD:DP:GQ:PL 0/0:35,1:37:43:0,43,778 0/1:46,7:53:80:80,0,925 0/0:65,2:67:89:0,89,1604 0/0:43,0:47:90:0,90,942 +chr1 109795318 . G T 97.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.503;DP=181;Dels=0.00;FS=35.688;HaplotypeScore=1.8383;MLEAC=2;MLEAF=0.250;MQ=35.87;MQ0=0;MQRankSum=0.574;QD=1.19;ReadPosRankSum=-1.033;SB=0.216 GT:AD:DP:GQ:PL 0/0:42,1:43:72:0,72,1093 0/1:40,5:45:56:56,0,1027 0/0:54,2:56:77:0,77,1624 0/1:32,5:37:83:83,0,704 +chr1 109813236 . T C 113.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.871;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.7161;MLEAC=3;MLEAF=0.375;MQ=28.71;MQ0=0;MQRankSum=-2.774;QD=3.17;ReadPosRankSum=1.574;SB=-1.309e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:34:34,0,119 0/0:8,2:10:15:0,15,201 0/1:6,4:10:72:72,0,94 0/1:13,4:17:51:51,0,324 +chr1 109837766 . C A 260.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.450;DP=113;Dels=0.00;FS=29.962;HaplotypeScore=8.6696;MLEAC=3;MLEAF=0.375;MQ=33.61;MQ0=0;MQRankSum=1.658;QD=2.90;ReadPosRankSum=1.076;SB=-1.163e-02 GT:AD:DP:GQ:PL 0/1:27,3:30:28:28,0,544 0/1:30,4:34:64:64,0,678 0/0:23,0:23:51:0,51,582 0/1:17,8:26:99:212,0,348 +chr1 109964605 rs17647543 T C 272.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.030;DB;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.1406;MLEAC=3;MLEAF=0.375;MQ=36.82;MQ0=0;MQRankSum=-1.848;QD=8.02;ReadPosRankSum=-0.697;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,5:16:99:143,0,272 0/0:11,0:11:30:0,30,419 0/1:11,5:16:99:136,0,316 0/1:1,1:2:35:37,0,35 +chr1 110020489 . C G 66.74 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.201;DP=145;Dels=0.01;FS=10.068;HaplotypeScore=8.4571;MLEAC=4;MLEAF=0.500;MQ=27.42;MQ0=0;MQRankSum=-1.557;QD=0.46;ReadPosRankSum=-0.275;SB=-1.117e+00 GT:AD:DP:GQ:PL 0/1:33,2:35:8:8,0,503 0/1:32,4:36:21:21,0,261 0/1:40,5:45:71:71,0,347 0/1:25,2:27:8:8,0,393 +chr1 110162879 . A G 155.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.981;DP=108;Dels=0.01;FS=46.072;HaplotypeScore=7.2195;MLEAC=4;MLEAF=0.500;MQ=30.02;MQ0=0;MQRankSum=-2.063;QD=1.44;ReadPosRankSum=0.356;SB=-8.332e-02 GT:AD:DP:GQ:PL 0/1:23,3:26:17:17,0,377 0/1:24,4:29:56:56,0,450 0/1:28,5:33:82:82,0,459 0/1:15,4:19:43:43,0,259 +chr1 110170089 . A T 72.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.723;DP=129;Dels=0.00;FS=42.672;HaplotypeScore=3.3737;MLEAC=2;MLEAF=0.250;MQ=38.78;MQ0=0;MQRankSum=-3.131;QD=1.19;ReadPosRankSum=0.578;SB=0.223 GT:AD:DP:GQ:PL 0/1:30,5:35:70:70,0,713 0/0:28,0:28:66:0,66,841 0/0:39,1:40:64:0,64,1135 0/1:23,3:26:44:44,0,527 +chr1 110210780 rs530021 C G 254.39 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.545;DB;DP=58;Dels=0.02;FS=3.403;HaplotypeScore=5.0810;MLEAC=6;MLEAF=0.750;MQ=16.35;MQ0=0;MQRankSum=-0.233;QD=5.92;ReadPosRankSum=1.300;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,12:15:3:0,3,24 1/1:3,8:11:6:64,6,0 1/1:2,15:17:18:192,18,0 0/1:5,9:14:22:44,0,22 +chr1 110279701 rs7483 C T 589.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.988;DB;DP=126;Dels=0.00;FS=3.371;HaplotypeScore=3.1703;MLEAC=4;MLEAF=0.500;MQ=24.37;MQ0=0;MQRankSum=-2.007;QD=4.68;ReadPosRankSum=0.162;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:21,11:32:99:179,0,267 0/1:20,17:37:99:193,0,196 0/1:22,12:34:94:94,0,297 0/1:10,13:23:85:166,0,85 +chr1 110279728 . T G 219.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.357;DP=163;Dels=0.00;FS=61.990;HaplotypeScore=2.5637;MLEAC=3;MLEAF=0.375;MQ=26.48;MQ0=0;MQRankSum=3.100;QD=1.77;ReadPosRankSum=-0.361;SB=0.911 GT:AD:DP:GQ:PL 0/0:38,1:39:28:0,28,527 0/1:34,5:39:97:97,0,155 0/1:45,4:49:34:34,0,670 0/1:30,5:36:99:132,0,273 +chr1 110282843 . C T 160.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.877;DP=65;Dels=0.03;FS=7.437;HaplotypeScore=1.1582;MLEAC=2;MLEAF=0.250;MQ=40.17;MQ0=0;MQRankSum=-2.300;QD=4.60;ReadPosRankSum=-1.251;SB=-1.595e+00 GT:AD:DP:GQ:PL 0/0:10,0:10:21:0,21,277 0/0:16,2:18:3:0,3,460 0/1:14,2:16:34:34,0,392 0/1:13,6:19:99:167,0,358 +chr1 110302284 . T G 222.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.653;DP=50;Dels=0.00;FS=10.897;HaplotypeScore=3.6368;MLEAC=4;MLEAF=0.500;MQ=29.75;MQ0=0;MQRankSum=-2.547;QD=4.45;ReadPosRankSum=-0.045;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:89:89,0,218 0/1:6,3:9:68:68,0,128 0/1:11,3:14:60:60,0,164 0/1:10,3:13:48:48,0,181 +chr1 110559324 rs138987880 A C 225.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.804;DB;DP=236;Dels=0.00;FS=85.499;HaplotypeScore=2.2280;MLEAC=2;MLEAF=0.250;MQ=37.33;MQ0=0;MQRankSum=-3.044;QD=1.67;ReadPosRankSum=0.055;SB=-6.198e-01 GT:AD:DP:GQ:PL 0/1:55,8:63:99:145,0,1396 0/0:60,6:66:16:0,16,1709 0/1:61,9:72:99:122,0,1740 0/0:32,1:34:54:0,54,1111 +chr1 110604033 . G T 200.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.136;DP=66;Dels=0.02;FS=17.265;HaplotypeScore=5.4316;MLEAC=4;MLEAF=0.500;MQ=25.37;MQ0=0;MQRankSum=0.103;QD=3.04;ReadPosRankSum=1.874;SB=-1.293e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:36:36,0,139 0/1:14,3:17:61:61,0,111 0/1:14,2:16:38:38,0,147 0/1:13,5:19:99:108,0,143 +chr1 110709524 . G C 196.37 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.142;DP=39;Dels=0.00;FS=12.325;HaplotypeScore=1.0892;MLEAC=3;MLEAF=0.375;MQ=27.58;MQ0=0;MQRankSum=0.264;QD=6.55;ReadPosRankSum=1.642;SB=0.842 GT:AD:DP:GQ:PL 0/1:7,2:9:49:49,0,148 0/0:8,1:9:12:0,12,133 0/1:8,4:12:72:72,0,102 0/1:4,5:9:7:118,0,7 +chr1 110884577 . A T 84.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.791;DP=271;Dels=0.00;FS=44.337;HaplotypeScore=4.7727;MLEAC=3;MLEAF=0.375;MQ=20.63;MQ0=0;MQRankSum=2.419;QD=0.40;ReadPosRankSum=0.908;SB=-6.477e-01 GT:AD:DP:GQ:PL 0/0:56,2:58:45:0,45,452 0/1:68,2:70:13:13,0,422 0/1:75,4:79:13:13,0,675 0/1:58,5:63:99:101,0,337 +chr1 110888107 . G T 112.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.026;DP=81;Dels=0.05;FS=0.000;HaplotypeScore=25.0632;MLEAC=4;MLEAF=0.500;MQ=24.85;MQ0=0;MQRankSum=-1.648;QD=1.38;ReadPosRankSum=-0.052;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,1:17:3:3,0,177 0/1:23,3:27:46:46,0,136 0/1:23,5:28:47:47,0,320 0/1:3,2:5:32:57,0,32 +chr1 111702095 . A G 179.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.063;DP=153;Dels=0.01;FS=149.063;HaplotypeScore=17.9739;MLEAC=3;MLEAF=0.375;MQ=27.81;MQ0=0;MQRankSum=-4.874;QD=1.30;ReadPosRankSum=0.751;SB=2.50 GT:AD:DP:GQ:PL 0/1:35,8:43:85:85,0,707 0/1:36,9:46:97:97,0,730 0/1:41,6:48:41:41,0,728 0/0:13,2:15:33:0,33,424 +chr1 111731057 . C T 169.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.388;DP=96;Dels=0.00;FS=2.443;HaplotypeScore=6.7035;MLEAC=4;MLEAF=0.500;MQ=31.51;MQ0=0;MQRankSum=-2.333;QD=1.77;ReadPosRankSum=2.207;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:56:56,0,212 0/1:18,4:23:56:56,0,384 0/1:24,7:32:76:76,0,522 0/1:17,2:19:24:24,0,130 +chr1 111784158 rs78279346 T C 259.47 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.327;DB;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9807;MLEAC=4;MLEAF=0.500;MQ=32.74;MQ0=0;MQRankSum=-1.837;QD=12.36;ReadPosRankSum=1.021;SB=16.93 GT:AD:DP:GQ:PL 1/1:5,1:7:3:31,3,0 0/0:8,0:8:12:0,12,144 1/1:3,6:9:18:221,18,0 0/1:3,2:5:55:55,0,61 +chr1 111824168 . A C 232.88 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.609;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=4.3301;MLEAC=5;MLEAF=0.625;MQ=22.92;MQ0=0;MQRankSum=2.724;QD=4.57;ReadPosRankSum=2.379;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:10:74,0,10 0/1:13,5:18:93:93,0,109 1/1:10,4:14:9:87,9,0 0/1:6,1:7:23:23,0,34 +chr1 111893958 rs1668 A G 865.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.381;DB;DP=99;Dels=0.01;FS=8.082;HaplotypeScore=3.2018;MLEAC=3;MLEAF=0.375;MQ=36.05;MQ0=0;MQRankSum=-1.184;QD=13.12;ReadPosRankSum=1.114;SB=-3.426e+01 GT:AD:DP:GQ:PL 0/1:4,17:21:9:559,0,9 0/0:33,0:33:93:0,93,1148 0/1:21,10:31:99:233,0,713 0/1:7,6:13:99:117,0,196 +chr1 111964136 . GA G 275.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.134;DP=89;FS=48.162;HaplotypeScore=31.7268;MLEAC=4;MLEAF=0.500;MQ=24.14;MQ0=0;MQRankSum=-0.183;QD=3.10;ReadPosRankSum=-1.208;SB=-2.035e+00 GT:AD:DP:GQ:PL 0/1:11,7:14:97:97,0,287 0/1:19,6:20:79:79,0,579 0/1:16,4:12:42:42,0,258 0/1:8,4:8:99:109,0,175 +chr1 111969134 . T G 490.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.614;DP=237;Dels=0.01;FS=17.677;HaplotypeScore=21.2167;MLEAC=4;MLEAF=0.500;MQ=32.64;MQ0=0;MQRankSum=0.778;QD=2.07;ReadPosRankSum=-0.329;SB=-1.272e-02 GT:AD:DP:GQ:PL 0/1:69,7:77:97:97,0,1233 0/1:49,13:64:99:257,0,797 0/1:55,9:64:99:143,0,769 0/1:27,3:30:36:36,0,361 +chr1 112033456 rs34460629 G GA 125.25 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.295;DB;DP=34;FS=0.000;HaplotypeScore=5.9540;MLEAC=1;MLEAF=0.125;MQ=37.82;MQ0=0;MQRankSum=-2.283;QD=11.39;RPA=3,4;RU=A;ReadPosRankSum=2.336;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:10,0:10:30:0,30,392 0/1:6,5:9:99:170,0,130 0/0:11,0:11:30:0,30,367 0/0:2,0:2:6:0,6,79 +chr1 112270061 . C T 48.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.793;DP=153;Dels=0.00;FS=19.564;HaplotypeScore=3.6208;MLEAC=1;MLEAF=0.125;MQ=33.58;MQ0=0;MQRankSum=-1.856;QD=1.40;ReadPosRankSum=2.319;SB=5.082e-04 GT:AD:DP:GQ:PL 0/1:29,6:35:85:85,0,767 0/0:37,0:37:81:0,81,952 0/0:48,0:48:99:0,120,1482 0/0:33,0:33:81:0,81,961 +chr1 113140611 . A C 50.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.979;DP=239;Dels=0.00;FS=17.405;HaplotypeScore=3.9214;MLEAC=1;MLEAF=0.125;MQ=35.03;MQ0=0;MQRankSum=-3.381;QD=2.55;ReadPosRankSum=3.616;SB=11.59 GT:AD:DP:GQ:PL 0/0:64,1:71:67:0,67,1219 0/0:68,3:71:42:0,42,1368 0/0:72,4:77:40:0,40,1522 0/1:14,4:19:87:87,0,211 +chr1 113232137 . A C 132.40 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.583;DP=222;Dels=0.00;FS=23.457;HaplotypeScore=13.3457;MLEAC=2;MLEAF=0.250;MQ=32.93;MQ0=0;MQRankSum=-0.964;QD=1.26;ReadPosRankSum=-1.775;SB=-2.685e+00 GT:AD:DP:GQ:PL 0/0:43,2:45:40:0,40,1205 0/1:49,6:55:59:59,0,870 0/0:67,5:72:1:0,1,1516 0/1:42,7:49:99:113,0,928 +chr1 113344496 rs11799500 G A 34.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=20.08;MQ0=0;MQRankSum=1.231;QD=6.95;ReadPosRankSum=-1.231;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:3,2:5:6:66,6,0 +chr1 113460358 . T G 265.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.740;DP=139;Dels=0.01;FS=137.293;HaplotypeScore=17.9289;MLEAC=4;MLEAF=0.500;MQ=32.06;MQ0=0;MQRankSum=-4.151;QD=1.91;ReadPosRankSum=-0.849;SB=-7.123e-01 GT:AD:DP:GQ:PL 0/1:35,9:45:64:64,0,824 0/1:28,3:31:49:49,0,550 0/1:32,10:42:99:189,0,697 0/1:18,2:20:5:5,0,550 +chr1 113641350 . C T 149.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.987;DP=82;Dels=0.02;FS=12.320;HaplotypeScore=11.3445;MLEAC=3;MLEAF=0.375;MQ=31.08;MQ0=0;MQRankSum=-0.446;QD=2.49;ReadPosRankSum=0.311;SB=0.990 GT:AD:DP:GQ:PL 0/1:18,3:21:80:80,0,143 0/1:23,4:27:82:82,0,198 0/0:21,1:22:9:0,9,324 0/1:8,1:10:30:30,0,111 +chr1 114281438 . C A 35.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.424;DP=151;Dels=0.02;FS=5.057;HaplotypeScore=6.9412;MLEAC=3;MLEAF=0.375;MQ=20.27;MQ0=0;MQRankSum=-3.695;QD=0.33;ReadPosRankSum=2.887;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:41,3:44:10:10,0,279 0/1:37,7:45:23:23,0,178 0/0:36,5:41:33:0,33,335 0/1:13,5:18:20:45,0,20 +chr1 114438435 . T G 56.18 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.252;DP=143;Dels=0.00;FS=1.380;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=40.35;MQ0=0;MQRankSum=-2.940;QD=1.81;ReadPosRankSum=-1.381;SB=-1.262e+01 GT:AD:DP:GQ:PL 0/0:29,2:31:8:0,8,933 0/0:38,1:39:59:0,59,1035 0/0:42,0:42:99:0,108,1466 0/1:26,5:31:92:92,0,716 +chr1 114506101 . A T 59.28 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.387;DP=50;Dels=0.02;FS=19.737;HaplotypeScore=16.5579;MLEAC=4;MLEAF=0.500;MQ=13.55;MQ0=0;MQRankSum=1.894;QD=1.69;ReadPosRankSum=3.056;SB=3.10 GT:AD:DP:GQ:PL 1/1:5,2:7:3:30,3,0 0/0:13,2:15:3:0,3,23 0/1:7,3:10:32:38,0,32 0/1:13,4:17:33:33,0,36 +chr1 114514620 . T C 49.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.412;DP=92;Dels=0.00;FS=12.703;HaplotypeScore=0.9796;MLEAC=2;MLEAF=0.250;MQ=32.91;MQ0=0;MQRankSum=-1.212;QD=1.15;ReadPosRankSum=0.242;SB=0.213 GT:AD:DP:GQ:PL 0/0:24,0:24:48:0,48,629 0/0:25,0:25:42:0,42,529 0/1:19,2:21:43:43,0,220 0/1:19,3:22:48:48,0,312 +chr1 114522185 . C G 34.40 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.766;DP=169;Dels=0.00;FS=64.554;HaplotypeScore=0.7474;MLEAC=1;MLEAF=0.125;MQ=35.79;MQ0=0;MQRankSum=-3.605;QD=0.80;ReadPosRankSum=-2.675;SB=-6.825e+00 GT:AD:DP:GQ:PL 0/0:39,3:42:5:0,5,1197 0/0:39,2:41:48:0,48,1257 0/1:37,6:43:70:70,0,1085 0/0:39,3:43:16:0,16,1158 +chr1 114641685 rs2774285 A G 2638.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.722;DB;DP=120;Dels=0.00;FS=7.739;HaplotypeScore=2.6808;MLEAC=7;MLEAF=0.875;MQ=30.43;MQ0=0;MQRankSum=-0.150;QD=21.99;ReadPosRankSum=0.059;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,12:28:99:334,0,371 1/1:8,21:29:54:632,54,0 1/1:7,28:35:59:1006,59,0 1/1:5,23:28:63:711,63,0 +chr1 114841811 rs10858042 C T 37.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.380;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=15.51;MQ0=0;MQRankSum=1.380;QD=5.29;ReadPosRankSum=-1.380;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:4,1:5:3:43,3,0 ./. 1/1:1,1:2:3:27,3,0 +chr1 114940495 . G C 60.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.843;DP=172;Dels=0.01;FS=96.178;HaplotypeScore=10.6935;MLEAC=3;MLEAF=0.375;MQ=33.09;MQ0=0;MQRankSum=-4.654;QD=0.41;ReadPosRankSum=2.444;SB=4.44 GT:AD:DP:GQ:PL 0/1:40,4:47:35:35,0,909 0/1:43,5:49:42:42,0,649 0/1:42,7:53:27:27,0,860 0/0:20,2:22:33:0,33,445 +chr1 115168097 rs12136548 T C 2452.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.865;DB;DP=166;Dels=0.01;FS=8.137;HaplotypeScore=1.2579;MLEAC=4;MLEAF=0.500;MQ=36.10;MQ0=0;MQRankSum=-1.304;QD=21.90;ReadPosRankSum=0.685;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:3,48:51:99:1794,115,0 0/0:54,0:54:99:0,156,1968 0/1:25,19:44:99:539,0,751 0/1:10,5:15:99:168,0,249 +chr1 115235995 . A T 239.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.396;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=13.1848;MLEAC=4;MLEAF=0.500;MQ=21.50;MQ0=0;MQRankSum=0.155;QD=4.28;ReadPosRankSum=-0.633;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,5:15:41:73,0,41 0/1:17,2:19:43:43,0,173 0/1:7,8:15:28:142,0,28 0/1:3,3:6:19:24,0,19 +chr1 115576023 rs10776792 A G 5636.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.398;DB;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=1.2961;MLEAC=8;MLEAF=1.00;MQ=39.61;MQ0=0;MQRankSum=0.784;QD=35.23;ReadPosRankSum=3.373;SB=-1.849e+03 GT:AD:DP:GQ:PL 1/1:4,40:44:99:1631,120,0 1/1:7,42:49:99:1701,126,0 1/1:5,41:46:97:1672,97,0 1/1:3,17:20:48:632,48,0 +chr1 115615611 . G A 45.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.074;DP=121;Dels=0.00;FS=2.405;HaplotypeScore=1.3913;MLEAC=1;MLEAF=0.125;MQ=37.17;MQ0=0;MQRankSum=-1.681;QD=1.84;ReadPosRankSum=0.401;SB=-1.150e-02 GT:AD:DP:GQ:PL 0/0:26,0:26:60:0,60,776 0/0:30,0:30:75:0,75,985 0/0:40,0:40:99:0,99,1209 0/1:21,4:25:82:82,0,376 +chr1 116107866 . A T 120.91 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.333;DP=159;Dels=0.00;FS=34.919;HaplotypeScore=1.3601;MLEAC=2;MLEAF=0.250;MQ=17.41;MQ0=0;MQRankSum=4.016;QD=1.73;ReadPosRankSum=-2.043;SB=1.10 GT:AD:DP:GQ:PL 0/0:36,1:37:9:0,9,101 0/0:49,3:52:27:0,27,302 0/1:41,6:47:99:124,0,101 0/1:21,2:23:38:38,0,172 +chr1 116333111 rs12039739 C T 181.45 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.749;DB;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=36.54;MQ0=0;MQRankSum=-0.717;QD=18.15;ReadPosRankSum=0.825;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:67:67,0,75 0/0:2,0:2:6:0,6,83 1/1:0,2:2:6:84,6,0 1/1:2,2:4:6:76,6,0 +chr1 116569530 rs2488429 G C 7826.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.826;DB;DP=338;Dels=0.00;FS=0.000;HaplotypeScore=1.8968;MLEAC=8;MLEAF=1.00;MQ=29.98;MQ0=0;MQRankSum=3.149;QD=23.15;ReadPosRankSum=4.826;SB=-3.364e+03 GT:AD:DP:GQ:PL 1/1:6,66:72:89:1397,89,0 1/1:9,85:94:99:2410,160,0 1/1:5,84:89:99:2252,171,0 1/1:14,68:82:99:1767,118,0 +chr1 116675901 . T G 160.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.270;DP=210;Dels=0.00;FS=123.280;HaplotypeScore=2.6854;MLEAC=3;MLEAF=0.375;MQ=39.57;MQ0=0;MQRankSum=-4.267;QD=1.00;ReadPosRankSum=1.576;SB=0.738 GT:AD:DP:GQ:PL 0/1:45,6:51:79:79,0,1242 0/0:46,3:49:21:0,21,1348 0/1:51,8:59:83:83,0,1474 0/1:46,5:51:42:42,0,1209 +chr1 117618263 rs146799971 G A 42.92 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.385;DB;DP=84;Dels=0.01;FS=22.682;HaplotypeScore=6.6431;MLEAC=1;MLEAF=0.125;MQ=30.51;MQ0=0;MQRankSum=-2.187;QD=2.04;ReadPosRankSum=-1.448;SB=-1.580e+01 GT:AD:DP:GQ:PL 0/0:20,1:21:1:0,1,359 0/0:16,2:18:16:0,16,420 0/1:17,4:21:78:78,0,389 0/0:22,1:23:42:0,42,515 +chr1 117699162 . T G 30.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.112;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.5373;MLEAC=3;MLEAF=0.375;MQ=30.27;MQ0=0;MQRankSum=-1.133;QD=0.75;ReadPosRankSum=0.901;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:11:11,0,200 0/0:22,1:23:17:0,17,517 0/1:16,3:19:47:47,0,372 0/1:8,2:10:15:15,0,89 +chr1 119427921 . C A 195.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.185;DP=127;Dels=0.02;FS=70.731;HaplotypeScore=4.6714;MLEAC=3;MLEAF=0.375;MQ=36.70;MQ0=0;MQRankSum=-0.540;QD=2.04;ReadPosRankSum=2.488;SB=0.872 GT:AD:DP:GQ:PL 0/1:28,6:34:99:134,0,700 0/1:23,4:27:46:46,0,620 0/1:29,4:33:59:59,0,735 0/0:30,1:31:24:0,24,682 +chr1 119683167 . T C 46.36 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.995;DP=50;Dels=0.00;FS=2.488;HaplotypeScore=1.2025;MLEAC=1;MLEAF=0.125;MQ=30.49;MQ0=0;MQRankSum=-2.611;QD=1.72;ReadPosRankSum=2.418;SB=0.035 GT:AD:DP:GQ:PL 0/1:9,2:11:1:1,0,211 0/0:10,1:11:18:0,18,216 0/1:12,4:16:81:81,0,275 0/0:11,1:12:24:0,24,282 +chr1 119934693 . A G 36.35 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.931;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=1.9559;MLEAC=1;MLEAF=0.125;MQ=35.81;MQ0=0;MQRankSum=-1.800;QD=1.35;ReadPosRankSum=1.428;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,4:15:71:71,0,325 0/1:10,1:11:1:1,0,279 0/0:20,0:20:33:0,33,438 0/0:12,0:12:18:0,18,197 +chr1 120087990 . A T 30.50 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.380;DP=59;Dels=0.00;FS=13.979;HaplotypeScore=3.4037;MLEAC=2;MLEAF=0.250;MQ=37.10;MQ0=0;MQRankSum=-0.545;QD=1.27;ReadPosRankSum=-0.512;SB=-4.481e+00 GT:AD:DP:GQ:PL 0/1:11,1:12:6:6,0,338 0/0:16,0:16:39:0,39,502 0/0:18,1:19:10:0,10,527 0/1:10,2:12:63:63,0,118 +chr1 120101640 . G T 54 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.644;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.2487;MLEAC=2;MLEAF=0.250;MQ=23.59;MQ0=0;MQRankSum=1.088;QD=2.57;ReadPosRankSum=-1.444;SB=0.618 GT:AD:DP:GQ:PL 0/1:10,3:13:64:68,0,64 0/0:7,0:7:6:0,6,62 0/0:10,0:10:6:0,6,68 0/1:6,2:8:26:26,0,125 +chr1 120150949 rs10923875 T C 114.84 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.371;DB;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=2.5190;MLEAC=4;MLEAF=0.500;MQ=19.25;MQ0=0;MQRankSum=1.654;QD=4.25;ReadPosRankSum=1.991;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,0:17:33:0,33,341 0/1:10,1:11:25:33,0,25 1/1:3,5:8:9:93,9,0 1/1:6,1:7:3:36,3,0 +chr1 120295827 . G T 83.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.121;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=0.6150;MLEAC=3;MLEAF=0.375;MQ=37.90;MQ0=0;MQRankSum=-0.402;QD=1.71;ReadPosRankSum=2.251;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,3:17:61:61,0,406 0/1:16,3:19:59:59,0,427 0/0:19,1:20:12:0,12,469 0/1:11,1:12:5:5,0,270 +chr1 120342533 . A C 122.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.408;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=7.5604;MLEAC=2;MLEAF=0.250;MQ=33.02;MQ0=0;MQRankSum=-3.321;QD=1.78;ReadPosRankSum=0.891;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,6:36:99:113,0,405 0/0:37,0:37:60:0,60,675 0/0:35,0:37:54:0,54,604 0/1:28,5:33:51:51,0,410 +chr1 120342534 . C G 151.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.820;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.0758;MLEAC=3;MLEAF=0.375;MQ=32.28;MQ0=0;MQRankSum=-2.784;QD=1.34;ReadPosRankSum=-0.804;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,4:37:50:50,0,634 0/1:32,7:39:99:131,0,594 0/1:34,3:37:13:13,0,718 0/0:31,2:34:15:0,15,468 +chr1 120466563 . T A 31.09 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.072;DP=113;Dels=0.02;FS=7.546;HaplotypeScore=2.4409;MLEAC=1;MLEAF=0.125;MQ=32.38;MQ0=0;MQRankSum=-1.368;QD=1.41;ReadPosRankSum=0.023;SB=-3.249e+00 GT:AD:DP:GQ:PL 0/0:30,2:32:11:0,11,712 0/0:29,0:29:57:0,57,683 0/0:29,0:29:60:0,60,705 0/1:16,4:20:67:67,0,409 +chr1 120484204 . G T 101.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.275;DP=99;Dels=0.04;FS=18.826;HaplotypeScore=8.5936;MLEAC=4;MLEAF=0.500;MQ=26.23;MQ0=0;MQRankSum=-0.263;QD=1.03;ReadPosRankSum=0.418;SB=-6.929e-02 GT:AD:DP:GQ:PL 0/1:24,3:27:23:23,0,368 0/1:19,3:23:60:60,0,289 0/1:24,2:26:19:19,0,240 0/1:16,3:19:42:42,0,153 +chr1 120543906 . C T 77.98 . AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.33;MQ0=0;QD=19.49;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,3:4:9:110,9,0 ./. +chr1 120904830 rs61804021 C T 56.29 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.246;DB;DP=19;Dels=0.00;FS=6.803;HaplotypeScore=0.9532;MLEAC=6;MLEAF=0.750;MQ=13.44;MQ0=0;MQRankSum=2.491;QD=4.02;ReadPosRankSum=-0.467;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,23 1/1:5,1:6:3:32,3,0 1/1:2,1:3:3:32,3,0 1/1:4,1:5:3:33,3,0 +chr1 121485071 rs77401738 C A 34.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.115;DB;DP=45;Dels=0.02;FS=3.722;HaplotypeScore=1.3512;MLEAC=4;MLEAF=1.00;MQ=12.16;MQ0=0;MQRankSum=1.362;QD=1.21;ReadPosRankSum=-1.197;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:6,6:12:3:35,3,0 1/1:11,5:16:3:32,3,0 ./. ./. +chr1 142828938 . C A 88.28 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.785;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.6191;MLEAC=4;MLEAF=0.500;MQ=16.38;MQ0=0;MQRankSum=2.483;QD=2.94;ReadPosRankSum=-0.743;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,3:9:53:54,0,53 0/0:11,0:11:3:0,3,22 0/1:14,2:16:40:40,0,75 1/1:4,1:5:3:36,3,0 +chr1 143744160 rs61823125 G A 288.55 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.630;DB;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3922;MLEAC=5;MLEAF=0.625;MQ=14.45;MQ0=0;MQRankSum=0.322;QD=2.47;ReadPosRankSum=0.936;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:12,16:28:9:108,9,0 0/1:18,14:32:70:70,0,115 0/1:16,17:33:34:76,0,34 0/1:16,8:24:73:79,0,73 +chr1 144014068 rs1884146 T C 2684.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.118;DB;DP=177;Dels=0.00;FS=10.317;HaplotypeScore=1.4813;MLEAC=4;MLEAF=0.500;MQ=34.57;MQ0=0;MQRankSum=-4.581;QD=15.17;ReadPosRankSum=0.814;SB=-7.350e+02 GT:AD:DP:GQ:PL 0/1:24,21:45:99:598,0,722 0/1:22,24:46:99:708,0,602 0/1:23,18:41:99:516,0,674 0/1:15,30:45:99:905,0,430 +chr1 144679945 rs138059150 C T 32.01 . AC=2;AF=0.500;AN=4;BaseQRankSum=-1.906;DB;DP=106;Dels=0.00;FS=46.560;HaplotypeScore=4.3335;MLEAC=3;MLEAF=0.750;MQ=10.46;MQ0=0;MQRankSum=2.963;QD=1.03;ReadPosRankSum=-0.336;SB=3.95 GT:AD:DP:GQ:PL 0/0:26,1:27:3:0,3,30 1/1:23,7:31:9:68,9,0 ./. ./. +chr1 144854491 rs2798856 T G 32.39 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.935;DB;DP=62;Dels=0.00;FS=1.556;HaplotypeScore=1.4717;MLEAC=4;MLEAF=0.500;MQ=9.77;MQ0=0;MQRankSum=1.018;QD=0.79;ReadPosRankSum=-1.329;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,9:13:22:26,0,22 0/1:11,3:14:17:17,0,73 0/0:13,8:21:3:0,3,23 1/1:11,3:14:3:31,3,0 +chr1 144866662 rs1064044 T C 52.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-6.568;DB;DP=560;Dels=0.00;FS=9.660;HaplotypeScore=5.9593;MLEAC=2;MLEAF=0.250;MQ=15.10;MQ0=0;MQRankSum=-7.348;QD=0.19;ReadPosRankSum=4.148;SB=-2.743e+01 GT:AD:DP:GQ:PL 0/0:90,37:127:39:0,39,445 0/0:110,40:150:72:0,72,749 0/1:109,41:150:18:18,0,312 0/1:95,37:132:76:76,0,323 +chr1 144882823 rs1698647 C T 3385.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.354;DB;DP=339;Dels=0.02;FS=17.713;HaplotypeScore=6.3615;MLEAC=4;MLEAF=0.500;MQ=32.28;MQ0=0;MQRankSum=-1.860;QD=9.99;ReadPosRankSum=3.539;SB=-1.166e+03 GT:AD:DP:GQ:PL 0/1:56,24:80:99:659,0,1378 0/1:50,40:90:99:987,0,1039 0/1:53,34:87:99:825,0,1499 0/1:44,32:76:99:914,0,864 +chr1 144882912 rs1698646 G T 354.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.896;DB;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=0.4666;MLEAC=4;MLEAF=0.500;MQ=30.21;MQ0=0;MQRankSum=-0.251;QD=2.04;ReadPosRankSum=-0.730;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,8:40:99:115,0,649 0/1:42,8:50:99:161,0,882 0/1:42,5:47:46:46,0,1043 0/1:29,7:36:75:75,0,631 +chr1 144917919 . A G 281.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.630;DP=113;Dels=0.02;FS=9.823;HaplotypeScore=7.2391;MLEAC=4;MLEAF=0.500;MQ=18.12;MQ0=0;MQRankSum=2.612;QD=2.49;ReadPosRankSum=-0.161;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:45:45,0,115 0/1:21,9:30:26:105,0,26 0/1:28,4:32:78:78,0,106 0/1:21,6:27:96:96,0,111 +chr1 144930571 rs2762866 C A 3066.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.257;DB;DP=236;Dels=0.00;FS=9.738;HaplotypeScore=1.7376;MLEAC=4;MLEAF=0.500;MQ=38.97;MQ0=0;MQRankSum=0.259;QD=12.99;ReadPosRankSum=2.172;SB=-1.119e+03 GT:AD:DP:GQ:PL 0/1:39,27:66:99:874,0,1328 0/1:43,18:61:99:517,0,1393 0/1:27,33:60:99:1201,0,771 0/1:33,16:49:99:517,0,954 +chr1 145558959 . A T 85.99 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.102;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.0143;MLEAC=2;MLEAF=0.250;MQ=32.77;MQ0=0;MQRankSum=-2.886;QD=1.09;ReadPosRankSum=0.781;SB=-1.203e-02 GT:AD:DP:GQ:PL 0/0:30,2:32:28:0,28,912 0/1:28,6:35:47:47,0,488 0/0:25,2:28:8:0,8,598 0/1:38,6:44:80:80,0,681 +chr1 145562087 rs41315701 G A 529.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.294;DB;DP=85;Dels=0.01;FS=17.711;HaplotypeScore=3.8044;MLEAC=4;MLEAF=0.500;MQ=29.66;MQ0=0;MQRankSum=-2.111;QD=6.23;ReadPosRankSum=0.452;SB=-2.290e+02 GT:AD:DP:GQ:PL 0/1:20,7:27:99:134,0,459 0/1:16,5:21:99:100,0,322 0/1:13,9:22:99:208,0,223 0/1:9,5:14:99:130,0,109 +chr1 145577585 rs12756687 C G 120.79 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.278;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=18.92;MQ0=0;MQRankSum=1.398;QD=8.63;ReadPosRankSum=0.678;SB=-5.813e+01 GT:AD:DP:GQ:PL 1/1:1,3:4:9:86,9,0 0/1:2,2:4:23:23,0,31 1/1:4,1:5:3:26,3,0 1/1:0,1:1:3:27,3,0 +chr1 145695923 rs1050956 T G 108.51 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.731;DB;DP=8;Dels=0.00;FS=3.136;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=22.68;MQ0=0;MQRankSum=0.731;QD=18.09;ReadPosRankSum=0.731;SB=-3.931e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:66,6,0 1/1:2,2:4:6:77,6,0 ./. ./. +chr1 146583350 rs140650020 C T 352.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.768;DB;DP=124;Dels=0.02;FS=1.426;HaplotypeScore=15.6204;MLEAC=4;MLEAF=0.500;MQ=22.61;MQ0=0;MQRankSum=-3.005;QD=2.84;ReadPosRankSum=-3.738;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:18,8:26:85:85,0,347 0/1:25,10:37:44:44,0,475 0/1:23,12:35:99:144,0,365 0/1:12,11:23:99:122,0,232 +chr1 146583396 . G T 225.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.347;DP=217;Dels=0.00;FS=24.884;HaplotypeScore=13.2470;MLEAC=4;MLEAF=0.500;MQ=21.53;MQ0=0;MQRankSum=-2.930;QD=1.04;ReadPosRankSum=2.579;SB=-1.191e-02 GT:AD:DP:GQ:PL 0/1:40,12:52:67:67,0,446 0/1:42,13:55:78:78,0,600 0/1:48,12:61:46:46,0,580 0/1:35,13:48:77:77,0,333 +chr1 146633933 rs1036852 G A 973.63 . AC=5;AF=0.625;AN=8;BaseQRankSum=5.938;DB;DP=59;Dels=0.02;FS=6.816;HaplotypeScore=5.8796;MLEAC=5;MLEAF=0.625;MQ=33.03;MQ0=0;MQRankSum=4.727;QD=22.64;ReadPosRankSum=1.423;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:27:0,27,298 1/1:2,15:17:21:584,21,0 0/1:8,10:19:99:323,0,123 1/1:4,3:7:9:117,9,0 +chr1 146675551 rs4950386 A G 2239.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.126;DB;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=1.2922;MLEAC=8;MLEAF=1.00;MQ=26.03;MQ0=0;MQRankSum=5.116;QD=19.65;ReadPosRankSum=-0.857;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,28:29:48:547,48,0 1/1:4,26:30:51:609,51,0 1/1:6,28:34:60:733,60,0 1/1:5,15:20:30:390,30,0 +chr1 146727763 rs1932978 G A 96.41 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.421;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.3319;MLEAC=4;MLEAF=0.667;MQ=32.71;MQ0=0;MQRankSum=0.421;QD=24.10;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,85 1/1:0,2:2:6:70,6,0 1/1:0,2:2:6:68,6,0 ./. +chr1 146765125 rs12726206 G A 159.27 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.167;DB;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.125;MQ=37.08;MQ0=0;MQRankSum=-1.503;QD=22.75;ReadPosRankSum=-1.437;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,6:7:22:195,0,22 0/0:5,0:5:12:0,12,174 0/0:4,0:4:9:0,9,121 0/0:6,1:7:15:0,15,210 +chr1 146791289 rs4950401 G A 1046.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.988;DB;DP=112;Dels=0.02;FS=13.707;HaplotypeScore=0.4811;MLEAC=4;MLEAF=0.500;MQ=32.18;MQ0=0;MQRankSum=0.128;QD=9.34;ReadPosRankSum=0.646;SB=-3.380e+02 GT:AD:DP:GQ:PL 0/1:16,12:28:99:258,0,408 0/1:12,14:26:99:349,0,178 0/1:16,13:29:99:319,0,288 0/1:21,6:27:99:163,0,400 +chr1 147091051 . C G 219.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.987;DP=224;Dels=0.00;FS=103.512;HaplotypeScore=10.5337;MLEAC=4;MLEAF=0.500;MQ=31.60;MQ0=0;MQRankSum=-4.740;QD=0.98;ReadPosRankSum=1.968;SB=-1.544e-02 GT:AD:DP:GQ:PL 0/1:49,8:57:98:98,0,1134 0/1:49,12:61:65:65,0,1075 0/1:49,7:56:69:69,0,867 0/1:43,6:49:30:30,0,904 +chr1 147119273 rs1344 G A 1403.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.111;DB;DP=148;Dels=0.00;FS=14.343;HaplotypeScore=3.0547;MLEAC=4;MLEAF=0.500;MQ=36.15;MQ0=0;MQRankSum=-1.976;QD=9.48;ReadPosRankSum=1.388;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:26,20:46:99:668,0,692 0/1:29,13:42:99:405,0,751 0/1:31,11:42:99:275,0,845 0/1:13,5:18:98:98,0,382 +chr1 147231160 . T A 80.33 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.775;DP=140;Dels=0.00;FS=41.627;HaplotypeScore=7.3175;MLEAC=3;MLEAF=0.375;MQ=32.75;MQ0=0;MQRankSum=-0.353;QD=0.80;ReadPosRankSum=-1.098;SB=-1.757e+00 GT:AD:DP:GQ:PL 0/1:34,3:37:3:3,0,819 0/1:26,3:29:23:23,0,796 0/1:29,5:34:95:95,0,714 0/0:37,3:40:19:0,19,921 +chr1 148004625 rs144324257 C A 150.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.860;DB;DP=89;Dels=0.00;FS=5.944;HaplotypeScore=2.6951;MLEAC=4;MLEAF=0.500;MQ=18.78;MQ0=0;MQRankSum=2.558;QD=1.69;ReadPosRankSum=2.917;SB=-9.440e+01 GT:AD:DP:GQ:PL 0/1:15,3:18:2:2,0,204 0/1:19,5:24:73:73,0,155 0/1:28,3:31:38:38,0,161 0/1:11,5:16:78:78,0,91 +chr1 148004716 rs149546622 C A 310.03 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.008;DB;DP=298;Dels=0.00;FS=30.274;HaplotypeScore=8.1372;MLEAC=4;MLEAF=0.500;MQ=8.50;MQ0=0;MQRankSum=6.671;QD=1.04;ReadPosRankSum=-4.338;SB=-1.283e+02 GT:AD:DP:GQ:PL 0/1:66,7:73:7:132,0,7 0/1:73,1:74:22:22,0,24 0/1:72,4:77:76:76,0,89 0/1:66,7:73:99:122,0,133 +chr1 148009989 . A C 145.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.588;DP=232;Dels=0.00;FS=6.161;HaplotypeScore=3.8666;MLEAC=3;MLEAF=0.375;MQ=12.22;MQ0=0;MQRankSum=-1.969;QD=0.84;ReadPosRankSum=-2.221;SB=0.140 GT:AD:DP:GQ:PL 0/1:53,5:58:51:51,0,81 0/0:56,3:59:27:0,27,301 0/1:52,8:60:59:59,0,130 0/1:51,4:55:79:79,0,185 +chr1 148015284 rs139907841 G C 100.11 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.441;DB;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.7030;MLEAC=2;MLEAF=0.250;MQ=13.82;MQ0=0;MQRankSum=-0.441;QD=2.71;ReadPosRankSum=1.909;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,8:18:45:60,0,45 0/0:17,1:18:9:0,9,79 0/0:17,6:23:12:0,12,112 0/1:12,7:19:16:81,0,16 +chr1 149047122 . G T 40.47 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.185;DP=78;Dels=0.00;FS=19.459;HaplotypeScore=6.6413;MLEAC=2;MLEAF=0.250;MQ=21.60;MQ0=0;MQRankSum=-0.933;QD=0.92;ReadPosRankSum=1.605;SB=-1.930e+00 GT:AD:DP:GQ:PL 0/0:8,0:8:9:0,9,97 0/1:19,7:26:67:67,0,140 0/0:20,6:26:21:0,21,242 0/1:13,5:18:14:14,0,58 +chr1 149093905 rs142517553 C T 319.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.849;DB;DP=292;Dels=0.00;FS=18.130;HaplotypeScore=3.2074;MLEAC=3;MLEAF=0.375;MQ=22.01;MQ0=0;MQRankSum=2.063;QD=1.52;ReadPosRankSum=3.270;SB=-1.463e+02 GT:AD:DP:GQ:PL 0/1:51,10:61:99:183,0,669 0/0:75,7:82:3:0,3,1059 0/1:72,7:79:38:38,0,970 0/1:58,12:70:99:140,0,663 +chr1 149094412 . A G 512.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.180;DP=221;Dels=0.00;FS=62.290;HaplotypeScore=9.8708;MLEAC=4;MLEAF=0.500;MQ=21.18;MQ0=0;MQRankSum=1.095;QD=2.32;ReadPosRankSum=4.232;SB=-2.812e+02 GT:AD:DP:GQ:PL 0/1:26,17:43:99:178,0,322 0/1:44,11:55:99:101,0,504 0/1:57,15:72:99:169,0,699 0/1:37,13:50:99:107,0,539 +chr1 149907258 rs78420505 C T 227.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.845;DB;DP=146;Dels=0.00;FS=2.247;HaplotypeScore=1.9212;MLEAC=1;MLEAF=0.125;MQ=40.43;MQ0=0;MQRankSum=-0.022;QD=9.50;ReadPosRankSum=1.048;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,126,1700 0/1:16,8:24:99:264,0,505 0/0:42,0:42:99:0,117,1602 0/0:37,0:37:99:0,105,1368 +chr1 150129614 rs76470761 C G 73.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.293;DB;DP=215;Dels=0.00;FS=156.303;HaplotypeScore=9.4976;MLEAC=3;MLEAF=0.375;MQ=38.83;MQ0=0;MQRankSum=-6.908;QD=0.44;ReadPosRankSum=3.757;SB=-2.627e+00 GT:AD:DP:GQ:PL 0/1:49,7:56:55:55,0,1646 0/1:44,6:50:57:57,0,1370 0/1:52,7:59:1:1,0,1499 0/0:47,3:50:51:0,51,1545 +chr1 150131130 . T G 210.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.791;DP=186;Dels=0.00;FS=41.455;HaplotypeScore=19.4396;MLEAC=3;MLEAF=0.375;MQ=30.98;MQ0=0;MQRankSum=-2.365;QD=1.41;ReadPosRankSum=2.678;SB=0.029 GT:AD:DP:GQ:PL 0/1:45,7:52:99:121,0,853 0/1:40,6:46:66:66,0,576 0/1:46,6:52:67:67,0,865 0/0:34,2:36:51:0,51,618 +chr1 150199123 rs7522034 G T 37.06 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.853;DB;DP=36;Dels=0.00;FS=23.068;HaplotypeScore=1.8077;MLEAC=2;MLEAF=0.250;MQ=26.74;MQ0=0;MQRankSum=-1.816;QD=2.65;ReadPosRankSum=0.810;SB=-4.666e+00 GT:AD:DP:GQ:PL 0/0:11,0:11:27:0,27,309 0/0:9,2:11:0:0,0,266 0/1:8,3:11:60:60,0,134 0/1:2,1:3:16:16,0,64 +chr1 150416913 rs16836940 A G 1766.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.681;DB;DP=199;Dels=0.01;FS=0.000;HaplotypeScore=2.0942;MLEAC=3;MLEAF=0.375;MQ=34.65;MQ0=0;MQRankSum=-3.659;QD=12.80;ReadPosRankSum=0.963;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,24:55:99:718,0,1012 0/0:61,0:61:99:0,178,2249 0/1:29,29:58:99:848,0,818 0/1:14,10:24:99:244,0,453 +chr1 150444664 . A G 158.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.472;DP=224;Dels=0.00;FS=180.120;HaplotypeScore=9.1493;MLEAC=2;MLEAF=0.250;MQ=32.94;MQ0=0;MQRankSum=0.886;QD=1.40;ReadPosRankSum=1.589;SB=0.112 GT:AD:DP:GQ:PL 0/1:47,7:54:89:89,0,1343 0/0:56,4:60:25:0,25,1403 0/1:52,7:59:99:111,0,1282 0/0:48,3:51:19:0,19,1097 +chr1 150445770 . T G 104.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.366;DP=280;Dels=0.00;FS=60.426;HaplotypeScore=10.2908;MLEAC=1;MLEAF=0.125;MQ=33.66;MQ0=0;MQRankSum=-3.991;QD=1.44;ReadPosRankSum=-1.843;SB=-6.608e+00 GT:AD:DP:GQ:PL 0/1:63,10:73:99:141,0,1631 0/0:70,5:75:37:0,37,1881 0/0:79,2:81:99:0,177,2225 0/0:45,5:50:29:0,29,941 +chr1 150482616 . A G 117.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.385;DP=245;Dels=0.00;FS=185.018;HaplotypeScore=8.0665;MLEAC=2;MLEAF=0.250;MQ=29.77;MQ0=0;MQRankSum=-4.018;QD=0.90;ReadPosRankSum=1.927;SB=-2.021e+00 GT:AD:DP:GQ:PL 0/1:52,7:59:40:40,0,1211 0/0:55,6:61:4:0,4,1273 0/1:61,10:71:99:118,0,1347 0/0:49,5:54:23:0,23,1135 +chr1 150484004 rs11801190 G A 540.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.809;DB;DP=125;Dels=0.01;FS=1.379;HaplotypeScore=8.8613;MLEAC=3;MLEAF=0.375;MQ=28.60;MQ0=0;MQRankSum=0.725;QD=6.01;ReadPosRankSum=-0.682;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:25,4:29:85:85,0,361 0/0:35,0:35:57:0,57,618 0/1:23,12:35:99:322,0,222 0/1:18,7:25:99:177,0,234 +chr1 150485248 . A C 224.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.457;DP=359;Dels=0.00;FS=32.155;HaplotypeScore=1.7354;MLEAC=1;MLEAF=0.125;MQ=36.40;MQ0=0;MQRankSum=-6.468;QD=2.78;ReadPosRankSum=1.261;SB=-6.999e-01 GT:AD:DP:GQ:PL 0/0:85,5:90:51:0,51,2005 0/0:79,4:83:46:0,46,2046 0/0:104,1:105:99:0,197,2818 0/1:64,17:81:99:261,0,1173 +chr1 150804263 . A C 174.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.912;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=6.4769;MLEAC=4;MLEAF=0.500;MQ=27.14;MQ0=0;MQRankSum=-2.132;QD=1.86;ReadPosRankSum=-0.959;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,5:21:76:76,0,263 0/1:23,2:25:17:17,0,346 0/1:27,6:33:82:82,0,419 0/1:9,5:14:42:42,0,113 +chr1 150876686 . G T 33.31 . AC=5;AF=0.833;AN=6;BaseQRankSum=-2.577;DP=41;Dels=0.00;FS=41.201;HaplotypeScore=0.9925;MLEAC=5;MLEAF=0.833;MQ=9.98;MQ0=0;MQRankSum=2.259;QD=1.07;ReadPosRankSum=0.032;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:11,4:15:3:26,3,0 0/1:10,1:11:17:17,0,25 1/1:4,1:5:3:28,3,0 +chr1 150941027 . G T 44.19 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.099;DP=97;Dels=0.00;FS=74.118;HaplotypeScore=3.8490;MLEAC=1;MLEAF=0.125;MQ=33.58;MQ0=0;MQRankSum=-2.006;QD=2.60;ReadPosRankSum=0.177;SB=-7.609e+00 GT:AD:DP:GQ:PL 0/0:23,0:23:51:0,51,598 0/0:27,2:29:26:0,26,669 0/0:26,2:28:8:0,8,723 0/1:13,4:17:80:80,0,280 +chr1 150959177 . C G 240.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.862;DP=130;Dels=0.00;FS=2.306;HaplotypeScore=3.5548;MLEAC=3;MLEAF=0.375;MQ=35.84;MQ0=0;MQRankSum=-3.468;QD=2.56;ReadPosRankSum=2.831;SB=-5.992e-01 GT:AD:DP:GQ:PL 0/0:34,2:36:20:0,20,915 0/1:26,9:35:99:222,0,531 0/1:29,4:33:54:54,0,595 0/1:23,3:26:6:6,0,564 +chr1 150991221 rs11204758 A G 126.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.255;DB;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8281;MLEAC=1;MLEAF=0.125;MQ=32.97;MQ0=0;MQRankSum=-0.020;QD=9.01;ReadPosRankSum=-0.498;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:27:0,27,357 0/1:9,5:14:99:162,0,158 0/0:13,0:13:27:0,27,346 0/0:4,0:4:12:0,12,166 +chr1 151065667 . G C 1306.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.880;DP=153;Dels=0.00;FS=39.328;HaplotypeScore=5.5662;MLEAC=4;MLEAF=0.500;MQ=32.84;MQ0=0;MQRankSum=-0.781;QD=8.54;ReadPosRankSum=2.709;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,10:40:99:253,0,594 0/1:22,12:34:99:335,0,453 0/1:35,16:51:99:433,0,859 0/1:15,12:28:99:328,0,292 +chr1 151109641 rs4971008 G A 168.42 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.059;DB;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.6754;MLEAC=5;MLEAF=0.625;MQ=30.07;MQ0=0;MQRankSum=-0.412;QD=11.23;ReadPosRankSum=-0.059;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,1:3:6:0,6,67 1/1:3,2:5:3:42,3,0 1/1:1,5:6:12:156,12,0 0/1:3,1:4:16:16,0,75 +chr1 151211688 . C G 213.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.529;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.9847;MLEAC=3;MLEAF=0.375;MQ=31.73;MQ0=0;MQRankSum=-2.403;QD=2.12;ReadPosRankSum=3.374;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,8:40:99:140,0,769 0/1:31,4:35:26:26,0,802 0/1:21,5:26:91:91,0,395 0/0:11,0:11:18:0,18,215 +chr1 151338570 rs2800953 G A 269.14 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.049;DB;DP=17;Dels=0.00;FS=8.113;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=28.21;MQ0=0;MQRankSum=1.415;QD=15.83;ReadPosRankSum=-0.732;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,4:4:12:125,12,0 0/1:2,2:4:19:73,0,19 0/1:3,2:5:30:63,0,30 0/1:2,2:4:35:53,0,35 +chr1 151752383 rs12754510 G A 166.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.235;DB;DP=99;Dels=0.04;FS=0.000;HaplotypeScore=3.9720;MLEAC=2;MLEAF=0.250;MQ=33.58;MQ0=0;MQRankSum=-3.506;QD=3.21;ReadPosRankSum=3.101;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:30,0:30:78:0,78,974 0/1:19,4:23:55:55,0,518 0/1:19,8:27:99:152,0,630 0/0:13,2:15:3:0,3,350 +chr1 151755415 . T C 33.50 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.366;DP=175;Dels=0.01;FS=27.097;HaplotypeScore=11.9728;MLEAC=2;MLEAF=0.250;MQ=24.51;MQ0=0;MQRankSum=2.578;QD=0.45;ReadPosRankSum=-2.705;SB=-5.085e+00 GT:AD:DP:GQ:PL 0/0:43,2:45:5:0,5,500 0/1:42,4:46:67:67,0,268 0/0:52,2:54:54:0,54,1051 0/1:27,2:29:3:3,0,408 +chr1 152081921 rs2496253 G C 1291.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.635;DB;DP=174;Dels=0.00;FS=2.336;HaplotypeScore=4.4675;MLEAC=2;MLEAF=0.250;MQ=36.35;MQ0=0;MQRankSum=1.429;QD=14.85;ReadPosRankSum=0.250;SB=-4.740e+02 GT:AD:DP:GQ:PL 0/1:22,18:40:99:578,0,445 0/1:23,24:47:99:755,0,499 0/0:53,0:53:99:0,144,1793 0/0:34,0:34:87:0,87,1004 +chr1 152188176 rs147618491 G A 64.45 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.443;DB;DP=86;Dels=0.00;FS=20.762;HaplotypeScore=0.4469;MLEAC=2;MLEAF=0.250;MQ=13.39;MQ0=0;MQRankSum=-1.277;QD=1.65;ReadPosRankSum=0.122;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,5:24:6:0,6,66 0/1:10,8:18:27:27,0,54 0/1:12,8:21:67:78,0,67 0/0:18,5:23:12:0,12,123 +chr1 152192542 . C T 49.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.848;DP=370;Dels=0.00;FS=40.540;HaplotypeScore=4.7012;MLEAC=3;MLEAF=0.375;MQ=16.41;MQ0=0;MQRankSum=2.887;QD=0.18;ReadPosRankSum=0.161;SB=-2.459e-02 GT:AD:DP:GQ:PL 0/1:91,3:94:32:32,0,315 0/0:90,1:91:51:0,51,565 0/1:85,5:90:29:29,0,507 0/1:92,3:95:32:32,0,353 +chr1 152193544 rs7535536 A G 812.57 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.783;DB;DP=72;Dels=0.03;FS=0.000;HaplotypeScore=5.5327;MLEAC=7;MLEAF=0.875;MQ=22.35;MQ0=0;MQRankSum=0.853;QD=11.29;ReadPosRankSum=0.520;SB=-1.339e+02 GT:AD:DP:GQ:PL 1/1:3,16:19:27:266,27,0 0/1:21,4:25:76:76,0,351 1/1:0,12:12:24:285,24,0 1/1:3,11:14:24:230,24,0 +chr1 152487872 . C T 348.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.372;DP=55;Dels=0.02;FS=3.010;HaplotypeScore=6.9573;MLEAC=4;MLEAF=0.500;MQ=27.51;MQ0=0;MQRankSum=-0.671;QD=6.34;ReadPosRankSum=2.102;SB=-1.271e-02 GT:AD:DP:GQ:PL 0/1:6,4:10:60:112,0,60 0/1:12,3:15:33:33,0,121 0/1:12,6:18:99:150,0,138 0/1:5,6:11:11:96,0,11 +chr1 152671397 . A G 385.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.810;DP=239;Dels=0.01;FS=145.569;HaplotypeScore=15.5252;MLEAC=4;MLEAF=0.500;MQ=18.28;MQ0=0;MQRankSum=2.903;QD=1.61;ReadPosRankSum=-2.889;SB=0.878 GT:AD:DP:GQ:PL 0/1:45,12:57:99:235,0,298 0/1:58,7:65:51:51,0,394 0/1:59,8:67:58:58,0,334 0/1:41,6:47:84:84,0,227 +chr1 152710233 . C A 83 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.331;DP=40;Dels=0.00;FS=33.294;HaplotypeScore=7.4360;MLEAC=2;MLEAF=0.250;MQ=23.20;MQ0=0;MQRankSum=-1.657;QD=3.77;ReadPosRankSum=1.436;SB=3.86 GT:AD:DP:GQ:PL 0/0:8,2:10:15:0,15,184 0/0:8,0:8:9:0,9,101 0/1:5,2:7:47:47,0,54 0/1:8,7:15:77:77,0,81 +chr1 152733301 rs4329520 T A 1875.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.198;DB;DP=164;Dels=0.01;FS=13.421;HaplotypeScore=2.4709;MLEAC=4;MLEAF=0.500;MQ=37.49;MQ0=0;MQRankSum=-2.320;QD=11.44;ReadPosRankSum=2.994;SB=-7.970e+02 GT:AD:DP:GQ:PL 0/1:22,20:42:99:670,0,569 0/1:26,13:39:99:352,0,694 0/1:27,22:49:99:702,0,785 0/1:25,7:32:99:194,0,819 +chr1 152733573 . C G 198.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.204;DP=89;Dels=0.03;FS=79.765;HaplotypeScore=5.6522;MLEAC=4;MLEAF=0.500;MQ=31.04;MQ0=0;MQRankSum=-1.294;QD=2.23;ReadPosRankSum=1.890;SB=0.297 GT:AD:DP:GQ:PL 0/1:12,3:15:66:66,0,281 0/1:22,3:25:24:24,0,388 0/1:21,2:24:22:22,0,402 0/1:16,6:22:99:129,0,331 +chr1 152759720 . C A 130.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.531;DP=265;Dels=0.02;FS=240.330;HaplotypeScore=24.8557;MLEAC=2;MLEAF=0.250;MQ=24.19;MQ0=0;MQRankSum=-1.614;QD=0.95;ReadPosRankSum=2.024;SB=-1.165e+00 GT:AD:DP:GQ:PL 0/1:50,6:58:31:31,0,817 0/1:59,15:77:99:141,0,864 0/0:66,6:72:11:0,11,939 0/0:48,5:54:46:0,46,684 +chr1 152958045 rs1611766 T G 441.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.175;DB;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=1.2372;MLEAC=4;MLEAF=0.500;MQ=30.00;MQ0=0;MQRankSum=2.408;QD=4.91;ReadPosRankSum=3.552;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,6:17:99:165,0,124 0/1:20,3:23:66:66,0,255 0/1:23,4:27:85:85,0,243 0/1:16,6:22:81:168,0,81 +chr1 153004721 rs1334848 A T 1314.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.237;DB;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=1.8096;MLEAC=4;MLEAF=0.500;MQ=31.98;MQ0=0;MQRankSum=0.136;QD=14.94;ReadPosRankSum=2.365;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,24:29:45:821,45,0 0/0:39,0:39:81:0,81,1056 0/1:23,9:32:99:235,0,542 0/1:15,11:26:99:307,0,379 +chr1 153004820 . G C 48.75 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.959;DP=226;Dels=0.00;FS=59.393;HaplotypeScore=4.5166;MLEAC=1;MLEAF=0.125;MQ=27.98;MQ0=0;MQRankSum=-0.093;QD=1.11;ReadPosRankSum=0.555;SB=-7.181e+00 GT:AD:DP:GQ:PL 0/0:46,3:49:3:0,3,896 0/0:64,4:68:9:0,9,1164 0/0:61,3:64:43:0,43,1195 0/1:38,6:44:84:84,0,558 +chr1 153066262 rs1933388 T C 186.43 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.374;DB;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=0.6698;MLEAC=3;MLEAF=0.375;MQ=16.64;MQ0=0;MQRankSum=-0.445;QD=2.27;ReadPosRankSum=1.879;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,10:20:32:106,0,32 0/0:20,0:20:9:0,9,108 0/1:22,10:32:24:24,0,108 0/1:20,9:29:48:99,0,48 +chr1 153122620 rs513555 T C 1352.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.198;DB;DP=102;Dels=0.02;FS=15.765;HaplotypeScore=5.0050;MLEAC=5;MLEAF=0.625;MQ=33.64;MQ0=0;MQRankSum=-0.828;QD=13.26;ReadPosRankSum=0.157;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,17:21:51:661,51,0 0/1:18,10:28:99:304,0,499 0/1:21,6:28:99:174,0,472 0/1:14,9:23:99:259,0,234 +chr1 153353198 rs2916217 A G 335.33 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.398;DB;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=1.9789;MLEAC=1;MLEAF=0.125;MQ=36.89;MQ0=0;MQRankSum=-1.350;QD=6.10;ReadPosRankSum=0.270;SB=-6.600e+01 GT:AD:DP:GQ:PL 0/0:24,0:24:60:0,60,702 0/1:21,12:33:99:370,0,319 0/0:35,0:35:81:0,81,1065 0/1:21,1:22:1:1,0,381 +chr1 153516151 . G C 423.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.649;DP=108;Dels=0.01;FS=10.087;HaplotypeScore=12.6883;MLEAC=3;MLEAF=0.375;MQ=28.73;MQ0=0;MQRankSum=-1.460;QD=5.73;ReadPosRankSum=-1.213;SB=4.490e-03 GT:AD:DP:GQ:PL 0/1:18,9:27:99:190,0,347 0/1:15,8:24:98:159,0,98 0/0:33,1:34:25:0,25,663 0/1:15,6:22:99:118,0,218 +chr1 153517092 rs138957616 GC G 974.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.726;DB;DP=109;FS=0.000;HaplotypeScore=47.3600;MLEAC=3;MLEAF=0.375;MQ=25.15;MQ0=0;MQRankSum=2.510;QD=11.89;RPA=4,3;RU=C;ReadPosRankSum=0.577;SB=-2.970e+02;STR GT:AD:DP:GQ:PL 0/0:27,0:17:39:0,39,506 0/1:14,12:21:60:351,0,60 0/1:16,15:25:99:531,0,122 0/1:18,5:14:99:145,0,109 +chr1 153580258 . T A 83.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.699;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.4474;MLEAC=2;MLEAF=0.250;MQ=31.51;MQ0=0;MQRankSum=-0.867;QD=1.78;ReadPosRankSum=1.007;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,1:18:1:1,0,308 0/1:14,1:15:5:5,0,181 0/0:22,0:22:33:0,33,422 0/1:9,5:14:92:115,0,92 +chr1 153914616 . G A 36.78 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.109;DP=53;Dels=0.00;FS=5.040;HaplotypeScore=5.5064;MLEAC=2;MLEAF=0.250;MQ=25.26;MQ0=0;MQRankSum=0.993;QD=0.92;ReadPosRankSum=-1.732;SB=13.58 GT:AD:DP:GQ:PL 0/0:12,1:13:5:0,5,222 0/1:10,1:11:10:10,0,170 0/1:12,2:16:29:29,0,131 0/1:10,2:13:39:39,0,173 +chr1 153924491 . C G 61.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.981;DP=94;Dels=0.01;FS=72.338;HaplotypeScore=6.7793;MLEAC=2;MLEAF=0.250;MQ=30.00;MQ0=0;MQRankSum=-1.682;QD=1.40;ReadPosRankSum=0.623;SB=0.142 GT:AD:DP:GQ:PL 0/1:17,3:20:21:21,0,392 0/1:19,5:24:82:82,0,299 0/0:19,4:23:16:0,16,418 0/0:24,2:26:42:0,42,505 +chr1 153956125 . C G 33.34 . AC=2;AF=0.500;AN=4;BaseQRankSum=-0.887;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=20.5082;MLEAC=2;MLEAF=0.500;MQ=13.65;MQ0=0;MQRankSum=2.366;QD=1.19;ReadPosRankSum=-0.887;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:10,2:12:16:30,0,16 0/1:12,3:15:18:38,0,18 ./. +chr1 153963833 . T A 31.46 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.214;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.8494;MLEAC=4;MLEAF=0.667;MQ=24.56;MQ0=0;MQRankSum=0.895;QD=1.97;ReadPosRankSum=0.546;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:25,3,0 0/1:5,1:6:18:20,0,18 0/1:7,1:8:16:25,0,16 ./. +chr1 153964603 . C A 45.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.286;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4266;MLEAC=3;MLEAF=0.375;MQ=27.15;MQ0=0;MQRankSum=-0.199;QD=0.79;ReadPosRankSum=-1.396;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,3:26:4:4,0,386 0/1:23,2:25:30:30,0,228 0/0:26,1:27:10:0,10,367 0/1:4,2:6:52:52,0,73 +chr1 153973561 . A T 132.12 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.203;DP=106;Dels=0.03;FS=0.000;HaplotypeScore=3.4568;MLEAC=2;MLEAF=0.250;MQ=29.03;MQ0=0;MQRankSum=-3.019;QD=2.20;ReadPosRankSum=1.997;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,1:24:20:0,20,459 0/0:21,1:22:7:0,7,385 0/1:26,7:34:86:86,0,276 0/1:18,5:23:87:87,0,206 +chr1 154192316 . G T 114.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.032;DP=46;Dels=0.00;FS=11.698;HaplotypeScore=3.4604;MLEAC=3;MLEAF=0.375;MQ=22.43;MQ0=0;MQRankSum=1.170;QD=3.11;ReadPosRankSum=1.262;SB=3.47 GT:AD:DP:GQ:PL 0/1:6,4:10:31:75,0,31 0/0:8,1:9:6:0,6,71 0/1:12,3:15:60:60,0,69 0/1:8,2:12:22:22,0,30 +chr1 154232502 . T G 142.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.291;DP=141;Dels=0.00;FS=11.572;HaplotypeScore=2.1851;MLEAC=3;MLEAF=0.375;MQ=32.80;MQ0=0;MQRankSum=-2.768;QD=1.43;ReadPosRankSum=2.386;SB=0.871 GT:AD:DP:GQ:PL 0/1:34,4:38:37:37,0,792 0/1:29,4:33:2:2,0,543 0/0:39,2:41:17:0,17,743 0/1:22,7:29:99:144,0,305 +chr1 154243457 rs12354278 A T 547.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.308;DB;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.4785;MLEAC=2;MLEAF=0.250;MQ=34.03;MQ0=0;MQRankSum=-0.653;QD=10.33;ReadPosRankSum=1.721;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,15:31:99:415,0,386 0/1:16,6:22:99:174,0,480 0/0:27,0:27:72:0,72,951 0/0:19,0:19:51:0,51,608 +chr1 154315689 . C G 228.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.354;DP=171;Dels=0.00;FS=56.900;HaplotypeScore=6.0410;MLEAC=4;MLEAF=0.500;MQ=31.29;MQ0=0;MQRankSum=0.958;QD=1.34;ReadPosRankSum=-4.307;SB=-1.388e-02 GT:AD:DP:GQ:PL 0/1:37,4:41:53:53,0,881 0/1:36,3:39:42:42,0,597 0/1:46,4:50:33:33,0,995 0/1:35,6:41:99:143,0,640 +chr1 154320804 . G A 92.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.541;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9025;MLEAC=3;MLEAF=0.375;MQ=27.00;MQ0=0;MQRankSum=-1.008;QD=2.49;ReadPosRankSum=1.579;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:67:67,0,161 0/0:12,0:12:21:0,21,210 0/1:12,3:15:53:53,0,262 0/1:6,2:8:15:15,0,53 +chr1 154403177 . A C 69.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.907;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=2.0350;MLEAC=3;MLEAF=0.375;MQ=25.80;MQ0=0;MQRankSum=-2.021;QD=1.52;ReadPosRankSum=1.025;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:70:70,0,299 0/1:9,1:10:4:4,0,179 0/0:14,0:14:27:0,27,307 0/1:11,4:15:37:37,0,128 +chr1 154492702 rs10908842 G A 1650.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.069;DB;DP=53;Dels=0.02;FS=36.079;HaplotypeScore=1.4591;MLEAC=8;MLEAF=1.00;MQ=34.55;MQ0=0;MQRankSum=3.260;QD=31.13;ReadPosRankSum=0.705;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,10:11:30:393,30,0 1/1:6,11:17:33:438,33,0 1/1:1,18:19:54:715,54,0 1/1:1,4:5:12:143,12,0 +chr1 154523563 . A T 38.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.526;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.3506;MLEAC=3;MLEAF=0.375;MQ=27.96;MQ0=0;MQRankSum=-1.526;QD=0.66;ReadPosRankSum=-1.762;SB=-9.142e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:37:37,0,523 0/1:15,3:19:29:29,0,271 0/0:25,1:26:51:0,51,515 0/1:16,3:20:16:16,0,400 +chr1 154523903 . C G 383.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.627;DP=181;Dels=0.02;FS=102.071;HaplotypeScore=7.8191;MLEAC=4;MLEAF=0.500;MQ=31.02;MQ0=0;MQRankSum=-0.315;QD=2.12;ReadPosRankSum=0.340;SB=-1.901e-02 GT:AD:DP:GQ:PL 0/1:32,7:39:99:112,0,650 0/1:45,4:49:27:27,0,874 0/1:40,5:45:61:61,0,744 0/1:35,10:45:99:226,0,647 +chr1 154698498 . G T 39.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.449;DP=66;Dels=0.03;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=0.250;MQ=27.12;MQ0=0;MQRankSum=-0.105;QD=1.11;ReadPosRankSum=-0.021;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:26:26,0,247 0/0:12,0:12:21:0,21,252 0/0:18,0:18:12:0,12,133 0/1:14,3:17:55:55,0,105 +chr1 154818509 rs1218562 C G 36.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.067;DB;DP=24;Dels=0.04;FS=3.310;HaplotypeScore=3.7827;MLEAC=2;MLEAF=1.00;MQ=11.49;MQ0=0;MQRankSum=1.589;QD=3.68;ReadPosRankSum=-1.067;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:8,2:10:6:68,6,0 ./. +chr1 154940168 . T G 53.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.244;DP=159;Dels=0.00;FS=107.785;HaplotypeScore=3.7855;MLEAC=2;MLEAF=0.250;MQ=24.83;MQ0=0;MQRankSum=1.032;QD=0.59;ReadPosRankSum=0.596;SB=-1.097e+00 GT:AD:DP:GQ:PL 0/0:31,2:33:21:0,21,687 0/1:43,5:49:52:52,0,653 0/1:36,6:42:43:43,0,550 0/0:32,3:35:14:0,14,644 +chr1 154988776 . T A 51.54 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.035;DP=68;Dels=0.00;FS=34.866;HaplotypeScore=5.8601;MLEAC=3;MLEAF=0.375;MQ=25.95;MQ0=0;MQRankSum=-1.894;QD=1.01;ReadPosRankSum=-0.126;SB=-4.198e+00 GT:AD:DP:GQ:PL 0/0:16,1:17:27:0,27,307 0/1:11,2:13:3:3,0,182 0/1:17,2:19:15:15,0,273 0/1:15,4:19:74:74,0,198 +chr1 155013794 . G A 278.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.944;DP=33;Dels=0.00;FS=6.743;HaplotypeScore=2.1410;MLEAC=4;MLEAF=0.500;MQ=22.75;MQ0=0;MQRankSum=0.529;QD=8.45;ReadPosRankSum=2.304;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,6:9:38:170,0,38 0/1:6,4:10:13:42,0,13 0/1:4,4:8:58:58,0,85 0/1:3,3:6:25:51,0,25 +chr1 155033153 . G C 263.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.435;DP=94;Dels=0.00;FS=4.781;HaplotypeScore=4.5759;MLEAC=4;MLEAF=0.500;MQ=28.31;MQ0=0;MQRankSum=2.524;QD=2.80;ReadPosRankSum=-0.606;SB=-2.044e-02 GT:AD:DP:GQ:PL 0/1:24,6:30:99:156,0,346 0/1:20,3:23:81:81,0,194 0/1:20,2:22:44:44,0,194 0/1:17,2:19:25:25,0,131 +chr1 155106338 . C T 389.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.026;DP=98;Dels=0.01;FS=18.563;HaplotypeScore=6.0387;MLEAC=4;MLEAF=0.500;MQ=32.48;MQ0=0;MQRankSum=-3.164;QD=3.98;ReadPosRankSum=3.289;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,9:29:99:175,0,286 0/1:19,4:24:74:74,0,341 0/1:17,5:23:99:116,0,275 0/1:16,4:21:67:67,0,252 +chr1 155148520 rs80254867 G A 486.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=4.649;DB;DP=172;Dels=0.01;FS=3.600;HaplotypeScore=21.9448;MLEAC=1;MLEAF=0.125;MQ=23.22;MQ0=0;MQRankSum=1.302;QD=10.82;ReadPosRankSum=-0.570;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:23,21:45:99:523,0,144 0/0:33,1:35:63:0,63,654 0/0:45,0:46:69:0,69,714 0/0:42,2:44:32:0,32,483 +chr1 155149546 . C T 410.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.926;DP=219;Dels=0.00;FS=215.477;HaplotypeScore=5.4122;MLEAC=3;MLEAF=0.375;MQ=33.47;MQ0=0;MQRankSum=-2.813;QD=2.35;ReadPosRankSum=2.732;SB=1.32 GT:AD:DP:GQ:PL 0/1:42,12:54:99:230,0,1130 0/1:51,7:58:99:103,0,1276 0/1:53,10:63:99:121,0,1434 0/0:42,2:44:65:0,65,1064 +chr1 155151079 . C G 46.36 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.460;DP=123;Dels=0.00;FS=7.059;HaplotypeScore=2.0363;MLEAC=2;MLEAF=0.250;MQ=36.08;MQ0=0;MQRankSum=-2.314;QD=0.81;ReadPosRankSum=-1.697;SB=-2.361e+00 GT:AD:DP:GQ:PL 0/1:25,2:28:4:4,0,461 0/1:25,4:29:80:80,0,550 0/0:33,0:33:54:0,54,661 0/0:31,2:33:21:0,21,614 +chr1 155165881 . A T 117.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.568;DP=294;Dels=0.00;FS=50.962;HaplotypeScore=4.1639;MLEAC=3;MLEAF=0.375;MQ=37.60;MQ0=0;MQRankSum=-5.243;QD=0.55;ReadPosRankSum=-0.788;SB=0.650 GT:AD:DP:GQ:PL 0/1:62,7:69:39:39,0,1828 0/1:68,9:77:49:49,0,1801 0/0:71,6:79:16:0,16,1974 0/1:61,7:69:73:73,0,1558 +chr1 155172852 . G T 195.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.880;DP=66;Dels=0.03;FS=28.109;HaplotypeScore=4.5081;MLEAC=3;MLEAF=0.375;MQ=29.78;MQ0=0;MQRankSum=-1.923;QD=4.08;ReadPosRankSum=1.413;SB=0.303 GT:AD:DP:GQ:PL 0/1:9,4:13:80:80,0,242 0/0:16,0:16:30:0,30,370 0/1:19,4:23:77:77,0,383 0/1:8,4:12:82:82,0,150 +chr1 155231852 . A T 85.11 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.007;DP=54;Dels=0.00;FS=7.616;HaplotypeScore=3.8779;MLEAC=4;MLEAF=0.500;MQ=29.02;MQ0=0;MQRankSum=-1.178;QD=1.58;ReadPosRankSum=2.823;SB=-2.489e+00 GT:AD:DP:GQ:PL 0/1:12,1:13:14:14,0,135 0/1:14,2:16:23:23,0,250 0/1:12,1:13:10:10,0,239 0/1:7,5:12:25:80,0,25 +chr1 155237756 . G A 251.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.937;DP=133;Dels=0.00;FS=15.124;HaplotypeScore=10.8194;MLEAC=4;MLEAF=0.500;MQ=27.14;MQ0=0;MQRankSum=-0.269;QD=1.89;ReadPosRankSum=1.477;SB=-7.345e-04 GT:AD:DP:GQ:PL 0/1:29,2:31:45:45,0,217 0/1:27,5:32:99:104,0,137 0/1:34,5:39:68:68,0,291 0/1:27,4:31:77:77,0,286 +chr1 155261662 . C G 89.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.540;DP=96;Dels=0.00;FS=12.804;HaplotypeScore=20.5272;MLEAC=3;MLEAF=0.375;MQ=29.73;MQ0=0;MQRankSum=-1.897;QD=1.41;ReadPosRankSum=-1.329;SB=-9.106e+00 GT:AD:DP:GQ:PL 0/1:15,3:18:53:53,0,313 0/1:20,4:25:59:59,0,187 0/0:29,3:32:18:0,18,684 0/1:18,3:21:21:21,0,248 +chr1 155269776 rs3020781 A G 190.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.491;DB;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.0446;MLEAC=3;MLEAF=0.375;MQ=32.33;MQ0=0;MQRankSum=-3.906;QD=3.29;ReadPosRankSum=-0.633;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,7:20:99:126,0,303 0/0:18,0:18:51:0,51,654 0/1:16,2:18:17:17,0,464 0/1:14,6:20:91:91,0,387 +chr1 155324384 . T G 57.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.222;DP=224;Dels=0.00;FS=9.393;HaplotypeScore=0.9778;MLEAC=1;MLEAF=0.125;MQ=34.79;MQ0=0;MQRankSum=-1.776;QD=2.15;ReadPosRankSum=-1.523;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/0:53,1:54:88:0,88,1392 0/0:70,2:72:99:0,108,1894 0/0:69,1:70:99:0,135,1996 0/1:22,5:27:94:94,0,639 +chr1 155449539 . T C 50.07 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.123;DP=88;Dels=0.01;FS=6.324;HaplotypeScore=11.1788;MLEAC=2;MLEAF=0.250;MQ=22.40;MQ0=0;MQRankSum=0.230;QD=0.93;ReadPosRankSum=0.771;SB=-3.507e+01 GT:AD:DP:GQ:PL 0/1:23,3:26:39:39,0,127 0/0:26,1:27:11:0,11,259 0/1:24,4:28:51:51,0,163 0/0:6,0:6:3:0,3,38 +chr1 155657968 . A C 41 . AC=3;AF=0.750;AN=4;BaseQRankSum=-0.579;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=2.7226;MLEAC=3;MLEAF=0.750;MQ=11.67;MQ0=0;MQRankSum=2.430;QD=1.28;ReadPosRankSum=-0.270;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:12,2:14:6:49,6,0 ./. 0/1:17,1:18:28:28,0,52 ./. +chr1 155837772 . G T 79.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.673;DP=87;Dels=0.00;FS=13.120;HaplotypeScore=7.5580;MLEAC=3;MLEAF=0.375;MQ=27.37;MQ0=0;MQRankSum=-0.438;QD=1.81;ReadPosRankSum=0.588;SB=-3.771e+00 GT:AD:DP:GQ:PL 0/0:14,0:14:21:0,21,222 0/1:23,2:25:30:30,0,239 0/0:27,2:29:0:0,0,497 0/1:15,4:19:89:89,0,148 +chr1 155891045 rs625658 A C 309.03 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.922;DB;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.2483;MLEAC=6;MLEAF=0.750;MQ=32.59;MQ0=0;MQRankSum=1.725;QD=14.05;ReadPosRankSum=1.303;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:55:55,0,185 1/1:2,5:7:15:197,15,0 0/1:4,2:6:60:60,0,69 1/1:0,1:1:3:41,3,0 +chr1 155922402 . C T 86.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.826;DP=64;Dels=0.05;FS=2.433;HaplotypeScore=6.1973;MLEAC=3;MLEAF=0.375;MQ=23.06;MQ0=0;MQRankSum=1.543;QD=1.66;ReadPosRankSum=1.486;SB=-1.185e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:51:51,0,137 0/0:12,0:12:21:0,21,208 0/1:17,4:21:68:68,0,188 0/1:12,1:13:10:10,0,121 +chr1 155932763 . G T 37.13 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.310;DP=137;Dels=0.00;FS=25.632;HaplotypeScore=1.6579;MLEAC=2;MLEAF=0.250;MQ=36.30;MQ0=0;MQRankSum=-2.274;QD=0.57;ReadPosRankSum=-0.509;SB=-1.346e+00 GT:AD:DP:GQ:PL 0/1:33,4:37:16:16,0,858 0/0:33,2:35:11:0,11,767 0/0:35,1:37:40:0,40,919 0/1:24,4:28:62:62,0,589 +chr1 156040027 . T A 104.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.944;DP=79;Dels=0.00;FS=29.478;HaplotypeScore=9.9448;MLEAC=3;MLEAF=0.375;MQ=26.68;MQ0=0;MQRankSum=-0.716;QD=1.65;ReadPosRankSum=1.944;SB=0.852 GT:AD:DP:GQ:PL 0/0:15,1:16:21:0,21,233 0/1:17,2:19:34:34,0,188 0/1:19,2:21:14:14,0,344 0/1:18,5:23:99:99,0,184 +chr1 156047086 . C T 53.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.097;DP=75;Dels=0.01;FS=26.381;HaplotypeScore=5.6959;MLEAC=2;MLEAF=0.250;MQ=26.01;MQ0=0;MQRankSum=-0.692;QD=1.28;ReadPosRankSum=1.071;SB=3.11 GT:AD:DP:GQ:PL 0/0:18,0:18:30:0,30,335 0/1:13,3:16:29:29,0,154 0/1:19,6:25:66:66,0,206 0/0:15,0:15:15:0,15,176 +chr1 156106736 . A T 295.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.096;DP=59;Dels=0.00;FS=69.901;HaplotypeScore=0.9097;MLEAC=4;MLEAF=0.500;MQ=34.05;MQ0=0;MQRankSum=-4.039;QD=5.01;ReadPosRankSum=2.281;SB=-5.768e-01 GT:AD:DP:GQ:PL 0/1:12,2:14:26:26,0,253 0/1:12,6:18:99:140,0,247 0/1:10,4:14:99:110,0,172 0/1:10,3:13:62:62,0,138 +chr1 156130298 . A G 297.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.905;DP=65;Dels=0.02;FS=82.684;HaplotypeScore=8.8219;MLEAC=4;MLEAF=0.500;MQ=25.02;MQ0=0;MQRankSum=0.274;QD=4.58;ReadPosRankSum=2.282;SB=-2.841e+00 GT:AD:DP:GQ:PL 0/1:7,7:14:80:135,0,80 0/1:16,6:22:91:91,0,216 0/1:13,4:17:39:39,0,301 0/1:8,3:11:75:75,0,117 +chr1 156221303 . A T 44.78 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.419;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.0958;MLEAC=3;MLEAF=0.375;MQ=35.17;MQ0=0;MQRankSum=-2.629;QD=0.39;ReadPosRankSum=2.313;SB=-1.219e+00 GT:AD:DP:GQ:PL 0/1:42,2:45:2:2,0,654 0/1:27,3:30:59:59,0,372 0/0:45,2:47:19:0,19,850 0/1:38,2:40:24:24,0,428 +chr1 156228753 . C A 32.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.135;DP=57;Dels=0.02;FS=2.396;HaplotypeScore=1.4368;MLEAC=2;MLEAF=0.250;MQ=30.10;MQ0=0;MQRankSum=0.612;QD=0.95;ReadPosRankSum=-2.164;SB=-5.780e-01 GT:AD:DP:GQ:PL 0/1:10,1:11:7:7,0,168 0/1:18,4:22:64:64,0,302 0/0:15,1:16:8:0,8,379 0/0:7,0:7:18:0,18,174 +chr1 156352015 . C G 80.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.042;DP=114;Dels=0.00;FS=4.460;HaplotypeScore=5.7246;MLEAC=2;MLEAF=0.250;MQ=34.92;MQ0=0;MQRankSum=-3.153;QD=1.29;ReadPosRankSum=1.184;SB=-1.568e+00 GT:AD:DP:GQ:PL 0/0:22,1:23:16:0,16,557 0/1:31,4:35:31:31,0,849 0/0:27,2:29:8:0,8,688 0/1:21,6:27:90:90,0,485 +chr1 156534525 rs4661184 A C 2035.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.417;DB;DP=108;Dels=0.00;FS=14.604;HaplotypeScore=1.0920;MLEAC=8;MLEAF=1.00;MQ=31.76;MQ0=0;MQRankSum=2.218;QD=18.84;ReadPosRankSum=-0.657;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:9,16:26:48:544,48,0 1/1:10,17:27:51:605,51,0 1/1:10,15:25:45:520,45,0 1/1:18,12:30:17:405,17,0 +chr1 156536133 rs4382715 A G 1162.38 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.644;DB;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=0.1446;MLEAC=8;MLEAF=1.00;MQ=29.25;MQ0=0;MQRankSum=1.288;QD=25.83;ReadPosRankSum=1.644;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:1,9:10:5:304,5,0 1/1:0,11:11:30:347,30,0 1/1:4,7:11:18:210,18,0 1/1:1,11:12:33:340,33,0 +chr1 156540738 rs7514468 T C 49.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=6;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=22.41;MQ0=0;MQRankSum=1.026;QD=12.25;ReadPosRankSum=1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:40,3,0 ./. 1/1:0,1:1:3:42,3,0 ./. +chr1 156626920 rs7524611 T C 71.05 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.652;DB;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=6.7060;MLEAC=5;MLEAF=0.833;MQ=15.97;MQ0=0;MQRankSum=1.881;QD=5.07;ReadPosRankSum=-1.652;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,22 1/1:6,1:7:3:38,3,0 1/1:4,3:7:6:72,6,0 ./. +chr1 156639516 . C G 178.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.694;DP=93;Dels=0.00;FS=42.052;HaplotypeScore=2.1838;MLEAC=4;MLEAF=0.500;MQ=26.93;MQ0=0;MQRankSum=2.320;QD=1.91;ReadPosRankSum=-1.946;SB=-4.443e-01 GT:AD:DP:GQ:PL 0/1:17,4:21:83:83,0,440 0/1:23,4:27:83:83,0,291 0/1:25,2:27:9:9,0,514 0/1:16,2:18:45:45,0,164 +chr1 156707558 . C CAA 420.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.980;DP=129;FS=50.369;HaplotypeScore=77.7161;MLEAC=4;MLEAF=0.500;MQ=33.05;MQ0=0;MQRankSum=-1.642;QD=3.26;RPA=1,3;RU=A;ReadPosRankSum=-4.186;SB=-6.423e-02;STR GT:AD:DP:GQ:PL 0/1:33,2:28:28:28,0,1142 0/1:16,7:21:99:295,0,468 0/1:36,3:36:99:131,0,1239 0/1:25,2:24:18:18,0,864 +chr1 156851265 rs145081333 C T 152.40 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.866;DB;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.2232;MLEAC=6;MLEAF=0.750;MQ=28.25;MQ0=0;MQRankSum=1.133;QD=9.53;ReadPosRankSum=-1.568;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,1:5:28:28,0,38 1/1:2,1:3:3:38,3,0 1/1:0,1:1:3:39,3,0 0/1:4,3:7:15:89,0,15 +chr1 156877234 . T G 76.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.808;DP=103;Dels=0.04;FS=4.168;HaplotypeScore=2.3352;MLEAC=3;MLEAF=0.375;MQ=30.97;MQ0=0;MQRankSum=-1.445;QD=0.99;ReadPosRankSum=2.044;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,2:23:36:36,0,317 0/1:21,3:24:27:27,0,440 0/1:22,4:26:55:55,0,428 0/0:24,2:26:5:0,5,559 +chr1 156877752 . A G 43.40 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.731;DP=17;Dels=0.00;FS=2.932;HaplotypeScore=0.3298;MLEAC=2;MLEAF=0.333;MQ=26.07;MQ0=0;MQRankSum=0.546;QD=4.82;ReadPosRankSum=-0.546;SB=0.887 GT:AD:DP:GQ:PL ./. 0/0:5,0:5:12:0,12,136 0/1:6,2:8:46:57,0,46 1/1:0,1:1:3:26,3,0 +chr1 156879892 . G A 31.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.254;DP=80;Dels=0.04;FS=34.350;HaplotypeScore=5.9112;MLEAC=2;MLEAF=0.250;MQ=31.57;MQ0=0;MQRankSum=-1.250;QD=0.68;ReadPosRankSum=-0.609;SB=-2.939e+00 GT:AD:DP:GQ:PL 0/0:12,0:12:27:0,27,326 0/1:21,4:25:51:51,0,326 0/0:17,2:19:0:0,0,417 0/1:19,2:21:20:20,0,345 +chr1 156908243 . G T 74.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.003;DP=109;Dels=0.01;FS=59.152;HaplotypeScore=16.5613;MLEAC=3;MLEAF=0.375;MQ=24.86;MQ0=0;MQRankSum=-1.518;QD=0.87;ReadPosRankSum=-0.364;SB=-7.837e-01 GT:AD:DP:GQ:PL 0/0:21,2:23:4:0,4,259 0/1:21,6:27:53:53,0,143 0/1:31,5:36:37:37,0,398 0/1:19,3:22:26:26,0,170 +chr1 156909917 . T A 60.17 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.549;DP=31;Dels=0.00;FS=5.798;HaplotypeScore=8.1127;MLEAC=4;MLEAF=0.667;MQ=17.84;MQ0=0;MQRankSum=1.902;QD=4.01;ReadPosRankSum=-0.549;SB=29.19 GT:AD:DP:GQ:PL 0/1:7,3:10:13:63,0,13 1/1:3,2:5:3:34,3,0 0/0:4,1:6:3:0,3,22 ./. +chr1 156917149 . C T 33.17 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.524;DP=78;Dels=0.03;FS=30.215;HaplotypeScore=10.6994;MLEAC=1;MLEAF=0.125;MQ=24.13;MQ0=0;MQRankSum=-2.781;QD=2.07;ReadPosRankSum=1.236;SB=-6.049e+00 GT:AD:DP:GQ:PL 0/0:12,3:16:9:0,9,120 0/1:11,5:16:69:69,0,163 0/0:19,2:22:18:0,18,217 0/0:21,1:22:27:0,27,305 +chr1 156949054 . T C 59.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.707;DP=88;Dels=0.01;FS=35.651;HaplotypeScore=6.8775;MLEAC=2;MLEAF=0.250;MQ=32.27;MQ0=0;MQRankSum=-3.384;QD=1.34;ReadPosRankSum=-0.435;SB=-3.961e-01 GT:AD:DP:GQ:PL 0/0:23,1:24:20:0,20,570 0/0:18,1:19:8:0,8,330 0/1:19,4:23:60:60,0,539 0/1:17,4:21:40:40,0,398 +chr1 157044073 rs147938300 GCTGA G 569.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.975;DB;DP=57;FS=1.683;HaplotypeScore=42.4693;MLEAC=3;MLEAF=0.375;MQ=31.07;MQ0=0;MQRankSum=-1.761;QD=14.99;ReadPosRankSum=0.051;SB=-2.000e+02 GT:AD:DP:GQ:PL 0/1:10,2:7:99:120,0,332 0/0:17,0:13:33:0,33,737 0/1:11,3:12:99:105,0,367 0/1:5,6:9:99:397,0,125 +chr1 157062707 . G T 57.46 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.398;DP=60;Dels=0.02;FS=8.080;HaplotypeScore=3.5570;MLEAC=1;MLEAF=0.125;MQ=29.09;MQ0=0;MQRankSum=1.951;QD=2.87;ReadPosRankSum=-1.004;SB=-3.956e+00 GT:AD:DP:GQ:PL 0/0:10,0:10:21:0,21,209 0/1:15,4:20:93:93,0,243 0/0:19,1:20:5:0,5,367 0/0:9,0:9:12:0,12,142 +chr1 157557022 . G A 39.06 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.050;DP=111;Dels=0.00;FS=72.666;HaplotypeScore=22.7440;MLEAC=1;MLEAF=0.125;MQ=23.68;MQ0=0;MQRankSum=1.386;QD=1.18;ReadPosRankSum=0.672;SB=-5.190e+00 GT:AD:DP:GQ:PL 0/1:28,5:33:75:75,0,381 0/0:30,2:32:23:0,23,487 0/0:25,1:26:18:0,18,397 0/0:20,0:20:15:0,15,142 +chr1 157648590 . C A 125.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.588;DP=119;Dels=0.00;FS=18.644;HaplotypeScore=1.2429;MLEAC=3;MLEAF=0.375;MQ=32.63;MQ0=0;MQRankSum=-1.679;QD=1.35;ReadPosRankSum=2.574;SB=-2.523e-02 GT:AD:DP:GQ:PL 0/1:27,3:30:23:23,0,475 0/1:29,5:34:88:88,0,501 0/1:25,4:29:58:58,0,399 0/0:26,0:26:33:0,33,381 +chr1 157771817 . T C 63.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.777;DP=152;Dels=0.03;FS=9.367;HaplotypeScore=13.3304;MLEAC=3;MLEAF=0.375;MQ=21.88;MQ0=0;MQRankSum=0.917;QD=0.56;ReadPosRankSum=-0.389;SB=-1.955e+00 GT:AD:DP:GQ:PL 0/1:33,4:37:29:29,0,228 0/1:36,2:40:3:3,0,292 0/0:37,1:39:27:0,27,412 0/1:28,4:32:72:72,0,146 +chr1 157771931 . T G 97.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.456;DP=96;Dels=0.00;FS=24.016;HaplotypeScore=2.8688;MLEAC=4;MLEAF=0.500;MQ=20.25;MQ0=0;MQRankSum=2.603;QD=1.02;ReadPosRankSum=1.473;SB=-1.430e+00 GT:AD:DP:GQ:PL 0/1:21,2:23:46:46,0,124 0/1:21,3:24:38:38,0,177 0/1:25,1:26:12:12,0,97 0/1:20,3:23:44:44,0,209 +chr1 158058188 . G T 909.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.825;DP=214;Dels=0.01;FS=85.971;HaplotypeScore=4.6700;MLEAC=4;MLEAF=0.500;MQ=31.57;MQ0=0;MQRankSum=-7.305;QD=4.25;ReadPosRankSum=-0.870;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,18:49:99:303,0,925 0/1:46,17:64:99:335,0,1159 0/1:38,12:50:99:185,0,1032 0/1:37,12:49:99:129,0,981 +chr1 158151337 . G T 76.33 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.709;DP=188;Dels=0.03;FS=2.217;HaplotypeScore=20.5030;MLEAC=1;MLEAF=0.125;MQ=31.33;MQ0=0;MQRankSum=-0.090;QD=0.83;ReadPosRankSum=-0.507;SB=-5.085e+00 GT:AD:DP:GQ:PL 0/0:42,0:44:90:0,90,1054 0/1:46,3:51:1:1,0,930 0/0:47,0:48:99:0,117,1290 0/1:33,6:40:99:111,0,619 +chr1 158165938 rs1633131 A C 273.18 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.672;DB;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.4905;MLEAC=5;MLEAF=0.625;MQ=27.31;MQ0=0;MQRankSum=-0.276;QD=3.96;ReadPosRankSum=-0.488;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:77:77,0,269 1/1:3,10:13:15:174,15,0 0/1:13,8:21:59:59,0,177 0/1:13,2:15:8:8,0,317 +chr1 158262290 . G A 31.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.820;DP=83;Dels=0.00;FS=18.519;HaplotypeScore=0.8808;MLEAC=1;MLEAF=0.125;MQ=34.81;MQ0=0;MQRankSum=-1.283;QD=0.81;ReadPosRankSum=3.007;SB=-3.643e+00 GT:AD:DP:GQ:PL 0/0:23,1:24:39:0,39,806 0/1:22,4:26:66:66,0,613 0/0:19,1:20:18:0,18,417 0/1:12,1:13:2:2,0,254 +chr1 158517658 . T C 154.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.537;DP=149;Dels=0.01;FS=24.408;HaplotypeScore=11.5454;MLEAC=3;MLEAF=0.375;MQ=25.44;MQ0=0;MQRankSum=-2.366;QD=1.20;ReadPosRankSum=-0.911;SB=0.730 GT:AD:DP:GQ:PL 0/1:28,9:37:99:102,0,487 0/1:40,7:47:80:80,0,744 0/1:40,4:44:16:16,0,699 0/0:18,1:19:22:0,22,440 +chr1 158612227 . A G 49.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.122;DP=160;Dels=0.00;FS=34.919;HaplotypeScore=8.3533;MLEAC=3;MLEAF=0.375;MQ=37.51;MQ0=0;MQRankSum=0.107;QD=0.44;ReadPosRankSum=1.821;SB=0.754 GT:AD:DP:GQ:PL 0/1:29,3:32:25:25,0,796 0/1:38,4:43:39:39,0,881 0/0:46,2:48:35:0,35,1091 0/1:34,3:37:29:29,0,908 +chr1 158641949 . T A 192.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.132;DP=108;Dels=0.01;FS=14.673;HaplotypeScore=4.9469;MLEAC=4;MLEAF=0.500;MQ=34.03;MQ0=0;MQRankSum=-2.976;QD=1.78;ReadPosRankSum=2.537;SB=-1.775e+00 GT:AD:DP:GQ:PL 0/1:19,4:23:81:81,0,480 0/1:21,4:25:70:70,0,485 0/1:32,2:34:2:2,0,653 0/1:20,5:25:80:80,0,512 +chr1 159163929 . T G 121.10 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.869;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=5.4065;MLEAC=2;MLEAF=0.333;MQ=21.93;MQ0=0;MQRankSum=1.517;QD=8.07;ReadPosRankSum=0.467;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:33:57,0,33 0/0:5,0:5:3:0,3,27 0/1:5,4:9:13:101,0,13 ./. +chr1 159402695 rs4491058 A C 534.34 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.945;DB;DP=24;Dels=0.04;FS=2.831;HaplotypeScore=0.9727;MLEAC=8;MLEAF=1.00;MQ=27.98;MQ0=0;MQRankSum=2.205;QD=22.26;ReadPosRankSum=1.197;SB=-2.619e+02 GT:AD:DP:GQ:PL 1/1:2,6:8:12:145,12,0 1/1:2,4:6:12:144,12,0 1/1:1,5:6:15:179,15,0 1/1:0,3:3:9:105,9,0 +chr1 159674933 rs876537 C T 319.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.687;DB;DP=209;Dels=0.00;FS=6.661;HaplotypeScore=0.4665;MLEAC=1;MLEAF=0.125;MQ=32.76;MQ0=0;MQRankSum=2.028;QD=6.40;ReadPosRankSum=-0.654;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,129,1583 0/1:37,13:50:99:356,0,1005 0/0:56,0:56:99:0,153,1756 0/0:57,0:57:99:0,168,1946 +chr1 159799698 . A C 101.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.772;DP=124;Dels=0.00;FS=30.075;HaplotypeScore=3.7624;MLEAC=4;MLEAF=0.500;MQ=28.92;MQ0=0;MQRankSum=-1.640;QD=0.82;ReadPosRankSum=2.273;SB=-3.071e-01 GT:AD:DP:GQ:PL 0/1:24,5:29:41:41,0,353 0/1:25,3:28:11:11,0,402 0/1:36,6:42:23:23,0,492 0/1:22,3:25:69:69,0,126 +chr1 159802627 rs2494480 A C 784.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.351;DB;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=3.4413;MLEAC=3;MLEAF=0.375;MQ=34.61;MQ0=0;MQRankSum=-1.337;QD=13.30;ReadPosRankSum=0.809;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,12:21:99:352,0,260 0/0:20,0:20:57:0,57,676 0/1:11,7:18:99:201,0,203 0/1:9,9:18:99:275,0,225 +chr1 159888517 . G T 32.38 . AC=4;AF=0.667;AN=6;BaseQRankSum=-2.878;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.2121;MLEAC=4;MLEAF=0.667;MQ=12.12;MQ0=0;MQRankSum=2.718;QD=0.62;ReadPosRankSum=-2.398;SB=0.900 GT:AD:DP:GQ:PL 0/1:18,4:23:18:18,0,21 0/1:10,1:11:23:23,0,24 ./. 1/1:16,2:18:3:30,3,0 +chr1 159889673 . C A 255.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.694;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=1.4855;MLEAC=3;MLEAF=0.375;MQ=34.88;MQ0=0;MQRankSum=-1.940;QD=2.59;ReadPosRankSum=0.323;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,6:32:99:145,0,433 0/1:33,4:38:64:64,0,475 0/0:39,3:42:15:0,15,752 0/1:24,4:28:90:90,0,293 +chr1 159942616 . G C 45.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.858;DP=45;Dels=0.02;FS=52.727;HaplotypeScore=2.2704;MLEAC=4;MLEAF=0.500;MQ=19.13;MQ0=0;MQRankSum=2.318;QD=1.02;ReadPosRankSum=-2.929;SB=6.24 GT:AD:DP:GQ:PL 0/1:11,2:13:17:17,0,59 0/1:9,1:10:28:28,0,70 0/1:13,1:14:27:27,0,65 0/1:5,2:7:16:16,0,36 +chr1 159990203 . T C 67.37 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.832;DP=79;Dels=0.00;FS=6.958;HaplotypeScore=2.9319;MLEAC=2;MLEAF=0.250;MQ=32.09;MQ0=0;MQRankSum=0.425;QD=2.11;ReadPosRankSum=1.374;SB=-4.946e+01 GT:AD:DP:GQ:PL 0/1:17,5:22:99:101,0,283 0/0:24,0:24:36:0,36,419 0/0:22,1:23:18:0,18,427 0/1:9,1:10:4:4,0,138 +chr1 160098583 . G A 49.31 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.522;DP=96;Dels=0.02;FS=0.000;HaplotypeScore=7.6144;MLEAC=3;MLEAF=0.375;MQ=20.15;MQ0=0;MQRankSum=1.352;QD=0.67;ReadPosRankSum=-1.621;SB=-3.210e-01 GT:AD:DP:GQ:PL 0/1:24,1:25:11:11,0,153 0/1:21,4:26:20:20,0,86 0/1:19,3:22:59:59,0,65 0/0:19,2:21:3:0,3,201 +chr1 160146367 . C T 89.24 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.281;DP=97;Dels=0.00;FS=19.127;HaplotypeScore=2.9445;MLEAC=2;MLEAF=0.250;MQ=32.96;MQ0=0;MQRankSum=-3.052;QD=4.25;ReadPosRankSum=-0.047;SB=-8.490e+00 GT:AD:DP:GQ:PL 0/0:22,2:24:2:0,2,569 0/0:18,1:19:0:0,0,406 0/0:31,2:33:9:0,9,735 0/1:14,7:21:99:123,0,287 +chr1 160151450 rs7519748 T C 2515.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.361;DB;DP=98;Dels=0.00;FS=8.331;HaplotypeScore=2.5756;MLEAC=7;MLEAF=0.875;MQ=29.54;MQ0=0;MQRankSum=-1.303;QD=25.67;ReadPosRankSum=-0.137;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:8,14:22:99:385,0,228 1/1:4,22:26:60:667,60,0 1/1:3,25:28:72:863,72,0 1/1:1,21:22:57:645,57,0 +chr1 160194813 . G T 56.88 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.363;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2710;MLEAC=2;MLEAF=0.250;MQ=26.97;MQ0=0;MQRankSum=-0.421;QD=1.96;ReadPosRankSum=0.000;SB=1.06 GT:AD:DP:GQ:PL 0/0:22,1:23:8:0,8,345 0/1:9,2:11:39:39,0,98 0/0:20,1:21:5:0,5,269 0/1:15,3:18:58:58,0,148 +chr1 160209522 . C A 123.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.130;DP=154;Dels=0.00;FS=87.834;HaplotypeScore=9.4183;MLEAC=3;MLEAF=0.375;MQ=32.05;MQ0=0;MQRankSum=-2.664;QD=1.02;ReadPosRankSum=-0.597;SB=0.561 GT:AD:DP:GQ:PL 0/1:31,9:40:99:117,0,757 0/1:35,4:39:33:33,0,712 0/1:39,3:42:16:16,0,790 0/0:30,3:33:19:0,19,522 +chr1 160523859 . A T 407.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.098;DP=183;Dels=0.01;FS=89.752;HaplotypeScore=7.4859;MLEAC=4;MLEAF=0.500;MQ=32.84;MQ0=0;MQRankSum=-2.524;QD=2.23;ReadPosRankSum=0.461;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:39,8:47:99:106,0,954 0/1:42,9:51:99:140,0,1082 0/1:40,7:47:70:70,0,1070 0/1:27,10:37:99:134,0,544 +chr1 160717872 rs527733 T G 301.17 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.982;DB;DP=34;Dels=0.00;FS=19.352;HaplotypeScore=1.3197;MLEAC=8;MLEAF=1.00;MQ=19.37;MQ0=0;MQRankSum=4.287;QD=8.86;ReadPosRankSum=-1.284;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:9:119,9,0 1/1:10,2:12:6:77,6,0 1/1:8,2:10:6:70,6,0 1/1:6,2:8:6:73,6,0 +chr1 160788022 . A T 89.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.923;DP=104;Dels=0.00;FS=2.396;HaplotypeScore=4.8898;MLEAC=3;MLEAF=0.375;MQ=31.42;MQ0=0;MQRankSum=-2.105;QD=1.19;ReadPosRankSum=0.816;SB=-1.887e-01 GT:AD:DP:GQ:PL 0/1:25,2:27:14:14,0,423 0/1:24,3:27:72:72,0,156 0/0:28,1:29:27:0,27,296 0/1:18,3:21:46:46,0,254 +chr1 160808731 . G C 431.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.531;DP=79;Dels=0.00;FS=6.152;HaplotypeScore=0.6589;MLEAC=4;MLEAF=0.500;MQ=27.53;MQ0=0;MQRankSum=1.431;QD=5.46;ReadPosRankSum=1.211;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,7:19:83:195,0,83 0/1:20,3:23:37:37,0,179 0/1:14,5:19:47:143,0,47 0/1:14,4:18:20:99,0,20 +chr1 160854445 rs2039415 T C 1126.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.436;DB;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=0.4079;MLEAC=5;MLEAF=0.625;MQ=41.44;MQ0=0;MQRankSum=-0.248;QD=15.02;ReadPosRankSum=0.544;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,6:19:99:186,0,412 1/1:0,20:20:60:859,60,0 0/1:13,2:16:45:45,0,437 0/1:16,3:19:82:82,0,493 +chr1 161010762 rs2073658 C T 343 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.427;DB;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=0.9170;MLEAC=1;MLEAF=0.125;MQ=38.11;MQ0=0;MQRankSum=-2.751;QD=26.38;ReadPosRankSum=0.456;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,11:13:43:379,0,43 0/0:9,0:9:24:0,24,343 0/0:11,0:11:30:0,30,420 0/0:9,0:9:27:0,27,357 +chr1 161143235 . A C 192.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.047;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.9264;MLEAC=3;MLEAF=0.375;MQ=33.96;MQ0=0;MQRankSum=-2.492;QD=2.12;ReadPosRankSum=0.422;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,6:31:99:102,0,653 0/0:25,1:26:30:0,30,661 0/1:26,5:31:72:72,0,548 0/1:24,5:29:62:62,0,529 +chr1 161183516 rs1136207 C T 1877.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.368;DB;DP=206;Dels=0.00;FS=4.543;HaplotypeScore=2.7662;MLEAC=3;MLEAF=0.375;MQ=37.90;MQ0=0;MQRankSum=-3.381;QD=13.81;ReadPosRankSum=1.508;SB=-1.850e+02 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,208,2779 0/1:24,17:41:99:540,0,814 0/1:31,25:56:99:790,0,1006 0/1:20,19:39:99:591,0,600 +chr1 161185058 rs2070901 G T 944.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.339;DB;DP=111;Dels=0.04;FS=0.000;HaplotypeScore=6.0527;MLEAC=5;MLEAF=0.625;MQ=28.88;MQ0=0;MQRankSum=-0.612;QD=8.51;ReadPosRankSum=0.399;SB=-3.901e+01 GT:AD:DP:GQ:PL 1/1:5,16:21:42:498,42,0 0/1:16,9:25:99:160,0,321 0/1:21,11:32:99:206,0,551 0/1:22,6:29:99:126,0,414 +chr1 161197809 . C A 163.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.586;DP=102;Dels=0.00;FS=4.673;HaplotypeScore=1.6428;MLEAC=3;MLEAF=0.375;MQ=34.08;MQ0=0;MQRankSum=-3.556;QD=1.95;ReadPosRankSum=3.201;SB=-1.314e-02 GT:AD:DP:GQ:PL 0/1:23,4:27:74:74,0,471 0/1:24,3:27:35:35,0,585 0/1:25,5:30:96:96,0,624 0/0:14,3:18:4:0,4,307 +chr1 161254181 . T C 100.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.716;DP=151;Dels=0.00;FS=15.165;HaplotypeScore=6.0369;MLEAC=3;MLEAF=0.375;MQ=29.05;MQ0=0;MQRankSum=-1.731;QD=0.90;ReadPosRankSum=1.396;SB=0.089 GT:AD:DP:GQ:PL 0/1:35,4:39:24:24,0,658 0/0:37,2:39:34:0,34,548 0/1:39,4:44:51:51,0,372 0/1:25,4:29:69:69,0,281 +chr1 161559327 rs3933769 A G 227.78 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.161;DB;DP=55;Dels=0.02;FS=8.880;HaplotypeScore=0.4972;MLEAC=7;MLEAF=0.875;MQ=15.58;MQ0=0;MQRankSum=0.597;QD=4.14;ReadPosRankSum=0.641;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,8:17:93:94,0,93 1/1:2,9:11:3:23,3,0 1/1:3,14:17:9:115,9,0 1/1:0,9:9:3:37,3,0 +chr1 161654948 rs6686673 T C 32.20 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.100;DB;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4828;MLEAC=2;MLEAF=0.333;MQ=12.12;MQ0=0;MQRankSum=1.614;QD=2.68;ReadPosRankSum=0.896;SB=0.358 GT:AD:DP:GQ:PL 1/1:7,5:12:6:70,6,0 ./. 0/0:17,0:17:9:0,9,90 0/0:15,0:15:3:0,3,24 +chr1 161680518 rs61801161 T A 1022.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.448;DB;DP=119;Dels=0.01;FS=1.051;HaplotypeScore=8.4877;MLEAC=3;MLEAF=0.375;MQ=28.68;MQ0=0;MQRankSum=4.943;QD=10.33;ReadPosRankSum=0.609;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:19,6:25:99:134,0,357 0/0:20,0:20:39:0,39,387 0/1:20,15:35:99:469,0,263 0/1:23,15:38:99:463,0,410 +chr1 161682830 . G A 117.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.439;DP=148;Dels=0.00;FS=16.669;HaplotypeScore=3.1411;MLEAC=4;MLEAF=0.500;MQ=30.05;MQ0=0;MQRankSum=-0.630;QD=1.11;ReadPosRankSum=0.503;SB=-2.150e+00 GT:AD:DP:GQ:PL 0/1:26,4:30:68:68,0,410 0/1:34,5:39:68:68,0,673 0/1:34,3:37:22:22,0,685 0/0:38,4:42:1:0,1,839 +chr1 161698660 rs12139524 C A 51.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=19.24;MQ0=0;MQRankSum=1.231;QD=10.20;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,1:3:3:42,3,0 1/1:1,1:2:3:42,3,0 ./. +chr1 161719637 rs150594405 C G 37.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.377;DB;DP=12;Dels=0.00;FS=12.175;HaplotypeScore=0.5945;MLEAC=3;MLEAF=0.375;MQ=27.25;MQ0=0;MQRankSum=2.262;QD=3.70;ReadPosRankSum=1.106;SB=6.18 GT:AD:DP:GQ:PL 1/1:4,1:5:3:41,3,0 0/1:3,2:5:36:36,0,53 0/0:1,0:1:3:0,3,40 0/0:1,0:1:3:0,3,32 +chr1 161954850 . T G 710.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.780;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4873;MLEAC=4;MLEAF=0.500;MQ=32.63;MQ0=0;MQRankSum=-1.486;QD=6.52;ReadPosRankSum=1.562;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,5:31:79:79,0,757 0/1:17,11:28:99:305,0,376 0/1:23,9:33:99:211,0,359 0/1:11,6:17:99:158,0,204 +chr1 162335173 . G T 47.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.957;DP=79;Dels=0.04;FS=4.875;HaplotypeScore=2.7261;MLEAC=3;MLEAF=0.375;MQ=27.70;MQ0=0;MQRankSum=-0.979;QD=0.84;ReadPosRankSum=-0.361;SB=2.10 GT:AD:DP:GQ:PL 0/1:17,2:20:15:15,0,338 0/1:13,1:14:9:9,0,137 0/1:16,3:19:65:65,0,209 0/0:22,1:23:10:0,10,441 +chr1 162345091 rs164181 G A 4637.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.890;DB;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.7940;MLEAC=8;MLEAF=1.00;MQ=35.14;MQ0=0;MQRankSum=-0.903;QD=28.10;ReadPosRankSum=4.087;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:5,25:30:38:945,38,0 1/1:12,33:45:69:1140,69,0 1/1:7,44:51:99:1575,106,0 1/1:8,28:39:14:977,14,0 +chr1 162353087 . C G 567.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.843;DP=104;Dels=0.01;FS=154.703;HaplotypeScore=9.4381;MLEAC=4;MLEAF=0.500;MQ=29.09;MQ0=0;MQRankSum=-2.152;QD=5.46;ReadPosRankSum=2.352;SB=1.16 GT:AD:DP:GQ:PL 0/1:19,7:26:99:169,0,403 0/1:20,9:29:99:183,0,363 0/1:18,6:24:73:73,0,348 0/1:15,9:24:99:185,0,298 +chr1 162353303 . G A 156.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.730;DP=151;Dels=0.00;FS=87.529;HaplotypeScore=4.5925;MLEAC=2;MLEAF=0.250;MQ=34.95;MQ0=0;MQRankSum=-3.660;QD=2.06;ReadPosRankSum=-0.622;SB=-9.572e-01 GT:AD:DP:GQ:PL 0/1:30,5:35:75:75,0,871 0/1:34,7:41:99:123,0,1005 0/0:31,1:32:39:0,39,867 0/0:39,4:43:28:0,28,1223 +chr1 162737116 rs2298258 C G 1197.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.078;DB;DP=180;Dels=0.00;FS=0.930;HaplotypeScore=2.7108;MLEAC=4;MLEAF=0.500;MQ=30.44;MQ0=0;MQRankSum=-4.021;QD=6.65;ReadPosRankSum=1.334;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:29,21:51:99:468,0,848 0/1:29,19:48:99:341,0,812 0/1:33,16:49:99:301,0,850 0/1:24,8:32:99:130,0,624 +chr1 163325008 . T C 41.06 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.181;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.6289;MLEAC=3;MLEAF=0.375;MQ=20.01;MQ0=0;MQRankSum=-1.748;QD=1.11;ReadPosRankSum=0.139;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,2:9:9:0,9,91 0/1:11,5:16:41:41,0,81 0/1:9,7:16:10:10,0,91 1/1:3,1:5:3:33,3,0 +chr1 165376030 . T A 84.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.113;DP=127;Dels=0.00;FS=2.257;HaplotypeScore=4.4346;MLEAC=2;MLEAF=0.250;MQ=36.85;MQ0=0;MQRankSum=-1.757;QD=1.46;ReadPosRankSum=-1.532;SB=0.954 GT:AD:DP:GQ:PL 0/0:33,1:34:48:0,48,954 0/1:28,3:31:32:32,0,585 0/0:33,2:35:3:0,3,746 0/1:22,5:27:93:93,0,550 +chr1 165634425 rs3820362 C G 1870.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.742;DB;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.2498;MLEAC=7;MLEAF=0.875;MQ=37.76;MQ0=0;MQRankSum=-0.256;QD=32.25;ReadPosRankSum=-0.229;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,12:14:36:480,36,0 0/1:5,8:13:99:287,0,166 1/1:1,14:15:42:547,42,0 1/1:1,15:16:45:601,45,0 +chr1 165677731 rs12044709 A C 39.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.087;DB;DP=72;Dels=0.00;FS=2.492;HaplotypeScore=0.7495;MLEAC=1;MLEAF=0.125;MQ=41.77;MQ0=0;MQRankSum=-1.509;QD=2.67;ReadPosRankSum=0.461;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/0:20,0:20:51:0,51,700 0/1:12,3:15:76:76,0,436 0/0:10,0:10:30:0,30,420 0/0:26,1:27:43:0,43,932 +chr1 166039446 . T A 628.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.004;DP=114;Dels=0.01;FS=16.277;HaplotypeScore=4.5915;MLEAC=4;MLEAF=0.500;MQ=30.86;MQ0=0;MQRankSum=-0.722;QD=5.51;ReadPosRankSum=-0.705;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,7:26:99:198,0,258 0/1:13,4:17:83:83,0,198 0/1:30,9:39:99:155,0,404 0/1:20,11:31:99:235,0,339 +chr1 166124134 rs896402 A G 39.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.727;DB;DP=10;Dels=0.00;FS=3.979;HaplotypeScore=0.3943;MLEAC=4;MLEAF=1.00;MQ=15.41;MQ0=0;MQRankSum=0.727;QD=5.57;ReadPosRankSum=0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:3:40,3,0 ./. 1/1:3,1:4:3:32,3,0 ./. +chr1 166246787 . C A 347.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.963;DP=106;Dels=0.00;FS=38.960;HaplotypeScore=6.9848;MLEAC=4;MLEAF=0.500;MQ=19.71;MQ0=0;MQRankSum=1.953;QD=3.28;ReadPosRankSum=3.831;SB=-9.194e-03 GT:AD:DP:GQ:PL 0/1:18,7:25:47:47,0,109 0/1:18,8:26:41:138,0,41 0/1:25,4:29:48:48,0,118 0/1:15,11:26:55:157,0,55 +chr1 166591083 . G C 157.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.855;DP=149;Dels=0.00;FS=1.623;HaplotypeScore=1.4357;MLEAC=4;MLEAF=0.500;MQ=34.23;MQ0=0;MQRankSum=-4.519;QD=1.21;ReadPosRankSum=1.221;SB=0.184 GT:AD:DP:GQ:PL 0/1:34,10:44:99:176,0,775 0/1:46,5:51:7:7,0,1153 0/1:33,3:36:14:14,0,707 0/0:15,2:18:1:0,1,272 +chr1 167345511 rs12730995 T G 86.32 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.850;DB;DP=32;Dels=0.00;FS=3.244;HaplotypeScore=0.6132;MLEAC=1;MLEAF=0.125;MQ=23.67;MQ0=0;MQRankSum=-1.041;QD=7.85;ReadPosRankSum=-1.272;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,6:11:73:122,0,73 0/0:9,1:10:21:0,21,237 0/0:5,0:5:9:0,9,96 0/0:5,0:6:9:0,9,86 +chr1 167654598 rs74586478 C T 98.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.094;DB;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.2425;MLEAC=1;MLEAF=0.125;MQ=32.76;MQ0=0;MQRankSum=-3.338;QD=5.21;ReadPosRankSum=0.662;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,0:22:60:0,60,751 0/1:10,9:19:99:135,0,277 0/0:23,0:23:60:0,60,779 0/0:24,0:24:66:0,66,830 +chr1 167787265 rs12060498 C T 396.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.367;DB;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9861;MLEAC=3;MLEAF=0.375;MQ=38.69;MQ0=0;MQRankSum=-2.994;QD=6.96;ReadPosRankSum=1.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,7:25:99:180,0,649 0/0:40,0:40:99:0,120,1637 0/1:15,7:22:99:171,0,516 0/1:7,3:10:89:89,0,194 +chr1 167794061 . G A 303.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.307;DP=166;Dels=0.01;FS=26.902;HaplotypeScore=19.3634;MLEAC=4;MLEAF=0.500;MQ=33.27;MQ0=0;MQRankSum=-3.699;QD=1.83;ReadPosRankSum=1.629;SB=-1.471e-02 GT:AD:DP:GQ:PL 0/1:38,8:46:99:119,0,806 0/1:32,7:39:99:145,0,713 0/1:35,4:39:31:31,0,823 0/1:36,5:41:51:51,0,744 +chr1 167803235 . A C 88.84 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.744;DP=75;Dels=0.00;FS=19.492;HaplotypeScore=4.0903;MLEAC=4;MLEAF=0.500;MQ=30.00;MQ0=0;MQRankSum=-3.223;QD=1.18;ReadPosRankSum=0.707;SB=5.40 GT:AD:DP:GQ:PL 0/1:15,1:17:1:1,0,214 0/1:21,2:24:20:20,0,320 0/1:20,5:25:80:80,0,350 0/1:6,3:9:28:28,0,188 +chr1 167985157 . A T 281.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.973;DP=101;Dels=0.01;FS=105.856;HaplotypeScore=4.1220;MLEAC=4;MLEAF=0.500;MQ=26.95;MQ0=0;MQRankSum=3.075;QD=2.79;ReadPosRankSum=1.647;SB=-2.351e+00 GT:AD:DP:GQ:PL 0/1:21,3:24:55:55,0,282 0/1:21,7:28:99:151,0,248 0/1:22,4:26:79:79,0,342 0/1:20,2:22:39:39,0,363 +chr1 168160705 . T C 39.33 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.717;DP=112;Dels=0.03;FS=11.703;HaplotypeScore=31.6570;MLEAC=2;MLEAF=0.250;MQ=21.89;MQ0=0;MQRankSum=0.922;QD=0.84;ReadPosRankSum=0.922;SB=31.93 GT:AD:DP:GQ:PL 0/0:25,0:29:12:0,12,124 0/0:30,0:33:21:0,21,204 0/1:29,3:33:43:43,0,102 0/1:12,2:14:35:35,0,79 +chr1 168665747 rs1433 C CT 530.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.229;DB;DP=71;FS=0.000;HaplotypeScore=18.1597;MLEAC=3;MLEAF=0.375;MQ=31.34;MQ0=0;MQRankSum=-1.018;QD=9.83;ReadPosRankSum=0.861;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/0:16,0:15:45:0,45,681 0/1:11,1:10:61:61,0,332 0/1:18,5:21:99:210,0,579 0/1:13,5:17:99:312,0,358 +chr1 168698111 . T A 47.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.547;DP=116;Dels=0.00;FS=3.516;HaplotypeScore=4.4557;MLEAC=3;MLEAF=0.375;MQ=33.36;MQ0=0;MQRankSum=-3.189;QD=0.55;ReadPosRankSum=-1.919;SB=-1.418e+01 GT:AD:DP:GQ:PL 0/1:21,3:24:23:23,0,448 0/1:25,3:28:52:52,0,420 0/1:31,3:34:13:13,0,456 0/0:27,3:30:3:0,3,639 +chr1 169511734 rs4525 T C 3528.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.109;DB;DP=261;Dels=0.00;FS=17.900;HaplotypeScore=2.1629;MLEAC=4;MLEAF=0.500;MQ=36.80;MQ0=0;MQRankSum=-4.003;QD=19.07;ReadPosRankSum=1.617;SB=-1.488e+03 GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,205,2699 1/1:3,56:59:99:2068,133,0 0/1:48,24:72:99:735,0,1483 0/1:31,23:54:99:725,0,923 +chr1 169515536 rs6672595 C T 31.26 . AC=3;AF=0.750;AN=4;BaseQRankSum=-0.720;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=22.89;MQ0=0;MQRankSum=0.000;QD=4.47;ReadPosRankSum=1.380;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,1:3:3:37,3,0 0/1:3,1:4:29:29,0,75 ./. +chr1 169565144 . C T 188.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.463;DP=339;Dels=0.01;FS=309.180;HaplotypeScore=16.2998;MLEAC=3;MLEAF=0.375;MQ=35.04;MQ0=0;MQRankSum=-4.917;QD=0.76;ReadPosRankSum=1.465;SB=1.53 GT:AD:DP:GQ:PL 0/1:72,9:81:22:22,0,1963 0/1:88,12:100:94:94,0,2627 0/0:85,3:88:99:0,127,2559 0/1:58,9:67:99:116,0,1456 +chr1 169572242 . A T 39.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.054;DP=76;Dels=0.01;FS=2.353;HaplotypeScore=9.7926;MLEAC=3;MLEAF=0.375;MQ=28.17;MQ0=0;MQRankSum=-0.272;QD=0.69;ReadPosRankSum=-1.011;SB=-1.587e-01 GT:AD:DP:GQ:PL 0/1:15,2:17:17:17,0,322 0/0:18,1:19:13:0,13,325 0/1:19,4:23:59:59,0,196 0/1:15,1:16:4:4,0,158 +chr1 169582926 . A C 66.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.093;DP=112;Dels=0.04;FS=17.895;HaplotypeScore=31.8930;MLEAC=3;MLEAF=0.375;MQ=21.10;MQ0=0;MQRankSum=-1.210;QD=0.78;ReadPosRankSum=-0.120;SB=0.130 GT:AD:DP:GQ:PL 0/0:23,3:26:18:0,18,168 0/1:21,3:24:29:29,0,125 0/1:24,8:33:63:63,0,124 0/1:20,5:25:18:18,0,191 +chr1 169586732 . C T 40.54 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.991;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=9.8116;MLEAC=4;MLEAF=0.667;MQ=25.41;MQ0=0;MQRankSum=-1.670;QD=1.19;ReadPosRankSum=0.696;SB=24.76 GT:AD:DP:GQ:PL 0/1:17,2:20:31:31,0,83 ./. 0/1:8,2:10:20:20,0,31 1/1:2,1:3:3:28,3,0 +chr1 169761861 . G T 112.36 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.833;DP=81;Dels=0.05;FS=16.831;HaplotypeScore=7.7640;MLEAC=4;MLEAF=0.500;MQ=29.38;MQ0=0;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.530;SB=-1.756e+01 GT:AD:DP:GQ:PL 0/1:15,5:20:87:87,0,200 0/1:20,1:21:11:11,0,163 0/0:31,1:32:9:0,9,426 1/1:2,2:4:6:59,6,0 +chr1 169792692 rs3766141 T C 361.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.446;DB;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7477;MLEAC=2;MLEAF=0.250;MQ=32.21;MQ0=0;MQRankSum=-0.121;QD=5.65;ReadPosRankSum=0.095;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,8:33:99:171,0,685 0/0:37,0:37:99:0,102,1190 0/1:22,9:31:99:232,0,582 0/0:12,0:12:30:0,30,325 +chr1 169823790 rs12143301 C G 2482.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.988;DB;DP=237;Dels=0.00;FS=2.469;HaplotypeScore=0.9558;MLEAC=3;MLEAF=0.375;MQ=39.09;MQ0=0;MQRankSum=-1.105;QD=14.69;ReadPosRankSum=2.349;SB=-1.087e+03 GT:AD:DP:GQ:PL 0/1:25,28:53:99:998,0,867 0/0:68,0:68:99:0,202,2726 0/1:40,25:65:99:846,0,1275 0/1:29,22:51:99:682,0,902 +chr1 170003562 . T C 55.20 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.715;DP=106;Dels=0.02;FS=51.867;HaplotypeScore=10.3576;MLEAC=1;MLEAF=0.125;MQ=32.52;MQ0=0;MQRankSum=-2.372;QD=1.90;ReadPosRankSum=1.557;SB=-2.949e+00 GT:AD:DP:GQ:PL 0/0:25,2:27:16:0,16,592 0/1:23,5:29:91:91,0,464 0/0:37,2:39:17:0,17,794 0/0:9,0:9:9:0,9,107 +chr1 171077075 . A T 31.50 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.281;DP=82;Dels=0.00;FS=7.538;HaplotypeScore=3.8840;MLEAC=1;MLEAF=0.125;MQ=29.00;MQ0=0;MQRankSum=-0.461;QD=1.37;ReadPosRankSum=1.835;SB=-3.557e+00 GT:AD:DP:GQ:PL 0/1:18,5:23:67:67,0,332 0/0:30,2:32:8:0,8,607 0/0:23,0:23:42:0,42,461 0/0:4,0:4:6:0,6,55 +chr1 171077165 rs2066529 G A 587.57 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.310;DB;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=1.6405;MLEAC=4;MLEAF=0.500;MQ=33.33;MQ0=0;MQRankSum=-0.772;QD=11.99;ReadPosRankSum=1.009;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:36:440,36,0 0/0:29,0:29:81:0,81,1017 0/1:17,6:23:99:165,0,530 0/1:9,2:11:31:31,0,210 +chr1 171301033 rs2294483 C G 189.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.233;DB;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=2.4798;MLEAC=1;MLEAF=0.125;MQ=34.57;MQ0=0;MQRankSum=-1.323;QD=10.56;ReadPosRankSum=0.278;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,108,1386 0/1:9,9:18:99:226,0,238 0/0:35,0:35:78:0,78,1044 0/0:13,0:13:36:0,36,461 +chr1 171544000 . G A 210.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.022;DP=67;Dels=0.00;FS=2.667;HaplotypeScore=1.0197;MLEAC=4;MLEAF=0.500;MQ=22.84;MQ0=0;MQRankSum=0.999;QD=3.14;ReadPosRankSum=3.491;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,8:20:78:158,0,78 0/1:17,4:21:41:41,0,215 0/1:15,3:18:33:33,0,110 0/1:7,1:8:21:21,0,47 +chr1 171548952 . C A 300.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.646;DP=234;Dels=0.00;FS=6.364;HaplotypeScore=2.2999;MLEAC=3;MLEAF=0.375;MQ=34.38;MQ0=0;MQRankSum=-3.777;QD=1.79;ReadPosRankSum=2.395;SB=-1.068e+00 GT:AD:DP:GQ:PL 0/1:50,5:55:52:52,0,927 0/0:65,1:66:99:0,102,1428 0/1:60,6:66:7:7,0,1405 0/1:33,13:46:99:284,0,642 +chr1 172013512 . T A 31.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.410;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=15.5291;MLEAC=2;MLEAF=0.250;MQ=24.77;MQ0=0;MQRankSum=-0.777;QD=0.62;ReadPosRankSum=-0.155;SB=-7.308e-01 GT:AD:DP:GQ:PL 0/1:29,6:35:62:62,0,544 0/0:31,0:31:66:0,66,691 0/0:37,1:38:81:0,81,774 0/1:14,1:15:9:9,0,162 +chr1 172422075 . C A 267.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.019;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.2488;MLEAC=4;MLEAF=0.500;MQ=32.28;MQ0=0;MQRankSum=-3.024;QD=2.16;ReadPosRankSum=-0.287;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,4:23:57:57,0,550 0/1:31,7:38:99:115,0,685 0/1:23,5:28:81:81,0,449 0/1:31,4:35:57:57,0,792 +chr1 172431210 rs4916261 G A 154.84 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.532;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=24.75;MQ0=0;MQRankSum=0.466;QD=11.06;ReadPosRankSum=-0.387;SB=-2.448e+01 GT:AD:DP:GQ:PL 1/1:1,3:4:9:99,9,0 0/1:3,1:4:23:23,0,73 ./. 1/1:4,2:6:6:73,6,0 +chr1 172431400 . T C 36.61 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.609;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7233;MLEAC=1;MLEAF=0.125;MQ=35.29;MQ0=0;MQRankSum=-0.465;QD=2.15;ReadPosRankSum=0.967;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:21:0,21,296 0/1:14,3:17:72:72,0,164 0/0:15,0:15:18:0,18,182 0/0:5,0:5:3:0,3,34 +chr1 172434542 . C A 221.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.437;DP=85;Dels=0.02;FS=0.000;HaplotypeScore=5.8208;MLEAC=3;MLEAF=0.375;MQ=29.49;MQ0=0;MQRankSum=-1.993;QD=2.95;ReadPosRankSum=2.845;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:55:55,0,126 0/1:18,6:25:86:86,0,182 0/1:20,6:26:99:123,0,402 0/0:10,0:10:12:0,12,126 +chr1 173526603 . T A 178.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.306;DP=198;Dels=0.02;FS=66.652;HaplotypeScore=19.7316;MLEAC=4;MLEAF=0.500;MQ=31.03;MQ0=0;MQRankSum=-3.107;QD=0.90;ReadPosRankSum=2.264;SB=-3.443e-02 GT:AD:DP:GQ:PL 0/1:48,7:56:74:74,0,826 0/1:51,8:59:71:71,0,943 0/1:51,6:57:54:54,0,815 0/1:18,4:23:22:22,0,325 +chr1 173526606 . G A 242.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.293;DP=190;Dels=0.02;FS=95.919;HaplotypeScore=18.7477;MLEAC=4;MLEAF=0.500;MQ=30.96;MQ0=0;MQRankSum=-2.104;QD=1.28;ReadPosRankSum=-1.548;SB=0.146 GT:AD:DP:GQ:PL 0/1:49,3:52:25:25,0,579 0/1:51,7:58:99:109,0,704 0/1:50,6:57:97:97,0,732 0/1:17,3:20:54:54,0,141 +chr1 173594022 rs34387166 C T 370 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.499;DB;DP=138;Dels=0.02;FS=0.000;HaplotypeScore=1.1408;MLEAC=1;MLEAF=0.125;MQ=37.04;MQ0=0;MQRankSum=-2.352;QD=9.49;ReadPosRankSum=0.882;SB=-1.859e+02 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,117,1535 0/1:21,15:36:99:406,0,500 0/0:49,0:49:99:0,144,1840 0/0:7,0:7:21:0,21,261 +chr1 173722359 . A C 55.45 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.369;DP=90;Dels=0.01;FS=4.721;HaplotypeScore=4.6471;MLEAC=2;MLEAF=0.250;MQ=29.67;MQ0=0;MQRankSum=-3.026;QD=1.21;ReadPosRankSum=1.419;SB=1.25 GT:AD:DP:GQ:PL 0/1:20,3:23:35:35,0,365 0/1:16,6:22:60:60,0,295 0/0:27,3:30:3:0,3,449 0/0:13,1:14:7:0,7,308 +chr1 173878832 rs5878 T C 451.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.538;DB;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=0.7332;MLEAC=1;MLEAF=0.125;MQ=36.15;MQ0=0;MQRankSum=-2.629;QD=6.28;ReadPosRankSum=1.310;SB=-1.960e+02 GT:AD:DP:GQ:PL 0/1:51,20:71:99:488,0,1709 0/0:81,0:81:99:0,226,2940 0/0:71,0:71:99:0,202,2588 0/0:62,0:62:99:0,175,2246 +chr1 175046821 . C T 172.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.813;DP=72;Dels=0.00;FS=50.464;HaplotypeScore=0.9944;MLEAC=3;MLEAF=0.375;MQ=34.51;MQ0=0;MQRankSum=-1.864;QD=2.98;ReadPosRankSum=-0.407;SB=-8.153e-01 GT:AD:DP:GQ:PL 0/1:14,6:20:99:153,0,406 0/0:13,1:14:17:0,17,453 0/1:21,2:23:5:5,0,626 0/1:11,4:15:56:56,0,312 +chr1 175086309 . A G 92.20 . AC=5;AF=0.625;AN=8;BaseQRankSum=-3.689;DP=77;Dels=0.01;FS=45.277;HaplotypeScore=0.6912;MLEAC=5;MLEAF=0.625;MQ=11.14;MQ0=0;MQRankSum=1.680;QD=1.54;ReadPosRankSum=-0.560;SB=6.93 GT:AD:DP:GQ:PL 0/0:15,1:16:3:0,3,23 1/1:11,4:15:6:69,6,0 0/1:23,2:25:14:41,0,14 1/1:18,2:20:3:25,3,0 +chr1 175087908 . G T 44.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.940;DP=122;Dels=0.00;FS=46.872;HaplotypeScore=7.4618;MLEAC=3;MLEAF=0.375;MQ=20.09;MQ0=0;MQRankSum=0.422;QD=0.48;ReadPosRankSum=1.728;SB=-3.622e+00 GT:AD:DP:GQ:PL 0/1:24,4:28:1:1,0,273 0/1:27,4:31:68:68,0,237 0/1:30,4:34:12:12,0,305 0/0:24,5:29:0:0,0,202 +chr1 175097766 . C G 196.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.985;DP=191;Dels=0.00;FS=42.021;HaplotypeScore=3.9905;MLEAC=3;MLEAF=0.375;MQ=33.20;MQ0=0;MQRankSum=0.385;QD=1.53;ReadPosRankSum=0.912;SB=1.60 GT:AD:DP:GQ:PL 0/1:32,4:36:99:100,0,410 0/1:40,3:43:40:40,0,588 0/0:60,2:62:42:0,42,881 0/1:45,5:50:99:100,0,400 +chr1 175113578 rs10912897 T C 4932.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.242;DB;DP=148;Dels=0.01;FS=7.732;HaplotypeScore=1.5580;MLEAC=8;MLEAF=1.00;MQ=35.77;MQ0=0;MQRankSum=2.740;QD=33.32;ReadPosRankSum=1.494;SB=-2.145e+03 GT:AD:DP:GQ:PL 1/1:0,34:34:99:1275,102,0 1/1:3,32:35:58:1175,58,0 1/1:8,37:45:39:1324,39,0 1/1:1,32:33:93:1158,93,0 +chr1 175335030 . G A 78.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.637;DP=232;Dels=0.00;FS=73.782;HaplotypeScore=6.4902;MLEAC=3;MLEAF=0.375;MQ=37.31;MQ0=0;MQRankSum=-4.779;QD=0.42;ReadPosRankSum=-1.020;SB=-8.966e-01 GT:AD:DP:GQ:PL 0/1:60,5:65:8:8,0,1517 0/1:47,8:55:99:102,0,1320 0/1:57,7:64:10:10,0,1549 0/0:45,2:47:34:0,34,1133 +chr1 175355391 rs859437 A G 2754.05 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.878;DB;DP=80;Dels=0.01;FS=7.162;HaplotypeScore=0.7283;MLEAC=8;MLEAF=1.00;MQ=39.66;MQ0=0;MQRankSum=0.959;QD=34.43;ReadPosRankSum=1.562;SB=-7.326e+02 GT:AD:DP:GQ:PL 1/1:2,19:21:25:729,25,0 1/1:3,15:18:13:597,13,0 1/1:1,19:20:54:757,54,0 1/1:2,18:20:54:710,54,0 +chr1 176050444 . A C 74.45 . AC=3;AF=0.500;AN=6;BaseQRankSum=-2.905;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9388;MLEAC=3;MLEAF=0.500;MQ=16.57;MQ0=0;MQRankSum=2.691;QD=1.38;ReadPosRankSum=-2.966;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:37:73,0,37 0/1:14,2:16:17:17,0,18 0/1:18,2:20:17:23,0,17 ./. +chr1 176563840 . T G 101.36 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.078;DP=117;Dels=0.02;FS=26.410;HaplotypeScore=13.8657;MLEAC=3;MLEAF=0.375;MQ=27.11;MQ0=0;MQRankSum=-0.798;QD=1.08;ReadPosRankSum=1.946;SB=19.55 GT:AD:DP:GQ:PL 0/1:33,2:35:45:45,0,196 0/1:21,6:27:91:91,0,137 0/1:29,1:31:6:6,0,188 0/0:20,1:22:6:0,6,51 +chr1 176708685 . A G 34.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.457;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=11.6682;MLEAC=3;MLEAF=0.375;MQ=19.26;MQ0=0;MQRankSum=1.423;QD=0.74;ReadPosRankSum=-0.886;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:36:36,0,136 0/1:13,1:14:23:23,0,45 0/1:14,2:16:17:17,0,73 0/0:8,0:8:3:0,3,42 +chr1 176833618 rs181806963 G C 289.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.153;DB;DP=131;Dels=0.00;FS=72.465;HaplotypeScore=2.9502;MLEAC=3;MLEAF=0.375;MQ=34.28;MQ0=0;MQRankSum=-3.679;QD=2.79;ReadPosRankSum=4.058;SB=2.41 GT:AD:DP:GQ:PL 0/1:34,7:41:94:94,0,833 0/1:20,5:26:99:115,0,437 0/1:29,7:37:99:124,0,574 0/0:26,1:27:23:0,23,643 +chr1 176927677 . G A 78.76 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.203;DP=15;Dels=0.00;FS=3.424;HaplotypeScore=2.3867;MLEAC=4;MLEAF=1.00;MQ=20.25;MQ0=0;MQRankSum=2.054;QD=7.88;ReadPosRankSum=0.573;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,2:5:3:35,3,0 1/1:1,4:5:9:78,9,0 ./. ./. +chr1 177242642 . G A 184.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.016;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=24.8697;MLEAC=3;MLEAF=0.375;MQ=20.11;MQ0=0;MQRankSum=2.222;QD=3.24;ReadPosRankSum=-1.411;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:15,2:17:35:35,0,56 0/1:13,4:17:30:64,0,30 0/1:14,6:23:45:128,0,45 0/0:13,0:14:9:0,9,77 +chr1 177639638 . C A 38.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.48;MQ0=0;MQRankSum=0.736;QD=12.92;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:1,2:3:6:70,6,0 +chr1 177902661 . A T 748.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.879;DP=154;Dels=0.01;FS=109.099;HaplotypeScore=12.5265;MLEAC=4;MLEAF=0.500;MQ=28.31;MQ0=0;MQRankSum=-3.681;QD=4.86;ReadPosRankSum=3.077;SB=0.074 GT:AD:DP:GQ:PL 0/1:26,12:38:99:232,0,156 0/1:25,10:35:99:120,0,389 0/1:29,14:43:99:280,0,305 0/1:27,9:36:99:159,0,440 +chr1 177929554 rs10913472 C T 2608.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.261;DB;DP=123;Dels=0.00;FS=4.753;HaplotypeScore=1.6425;MLEAC=5;MLEAF=0.625;MQ=34.27;MQ0=0;MQRankSum=-2.607;QD=21.21;ReadPosRankSum=1.686;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:19,15:34:99:465,0,584 1/1:1,36:37:99:1336,108,0 0/1:17,18:35:99:569,0,463 0/1:8,9:17:98:284,0,98 +chr1 177929940 rs7413442 G A 1433.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.184;DB;DP=205;Dels=0.00;FS=7.225;HaplotypeScore=3.8810;MLEAC=3;MLEAF=0.375;MQ=34.53;MQ0=0;MQRankSum=-5.424;QD=9.37;ReadPosRankSum=1.062;SB=-2.500e+02 GT:AD:DP:GQ:PL 0/1:37,18:55:99:447,0,1259 0/0:51,1:52:99:0,150,1917 0/1:29,16:45:99:392,0,929 0/1:27,26:53:99:638,0,667 +chr1 178854162 rs6425503 C T 781.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.579;DB;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7427;MLEAC=5;MLEAF=0.625;MQ=29.96;MQ0=0;MQRankSum=-3.287;QD=9.65;ReadPosRankSum=-0.377;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,6:24:99:125,0,543 1/1:1,17:18:45:477,45,0 0/1:15,7:22:99:148,0,382 0/1:12,5:17:77:77,0,248 +chr1 179004587 . A T 62.48 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.863;DP=126;Dels=0.01;FS=57.077;HaplotypeScore=3.5949;MLEAC=3;MLEAF=0.375;MQ=10.50;MQ0=0;MQRankSum=-0.842;QD=0.68;ReadPosRankSum=-1.715;SB=1.79 GT:AD:DP:GQ:PL 1/1:15,3:18:3:29,3,0 0/1:29,8:37:39:64,0,39 0/0:29,4:33:12:0,12,115 0/1:30,7:37:13:13,0,78 +chr1 179077936 . T A 156.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.761;DP=176;Dels=0.00;FS=86.058;HaplotypeScore=9.3897;MLEAC=3;MLEAF=0.375;MQ=26.96;MQ0=0;MQRankSum=-3.802;QD=1.19;ReadPosRankSum=4.847;SB=0.889 GT:AD:DP:GQ:PL 0/1:35,10:45:85:85,0,891 0/1:37,8:45:56:56,0,766 0/0:40,4:44:22:0,22,844 0/1:34,8:42:59:59,0,627 +chr1 179102299 . C A 42.33 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.436;DP=99;Dels=0.04;FS=3.949;HaplotypeScore=9.1465;MLEAC=2;MLEAF=0.250;MQ=11.53;MQ0=0;MQRankSum=-2.583;QD=0.67;ReadPosRankSum=5.178;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,16:28:13:69,0,13 0/0:17,10:27:3:0,3,22 0/1:16,15:31:12:12,0,92 0/0:7,2:9:6:0,6,66 +chr1 179414105 rs11577579 A C 167.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.912;DB;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.0981;MLEAC=1;MLEAF=0.125;MQ=33.84;MQ0=0;MQRankSum=-1.950;QD=5.96;ReadPosRankSum=-0.908;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:30,0:31:87:0,87,1091 0/1:20,8:28:99:203,0,533 0/0:34,0:34:99:0,99,1231 0/0:9,0:9:18:0,18,223 +chr1 179425771 . T C 42.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.186;DP=71;Dels=0.01;FS=18.087;HaplotypeScore=1.4243;MLEAC=4;MLEAF=0.500;MQ=11.19;MQ0=0;MQRankSum=1.577;QD=0.88;ReadPosRankSum=-1.942;SB=3.92 GT:AD:DP:GQ:PL 0/0:23,0:23:3:0,3,38 1/1:13,1:14:3:35,3,0 0/1:14,1:15:19:25,0,19 0/1:16,2:18:24:24,0,30 +chr1 179557130 rs35777003 T A 171.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.431;DB;DP=42;Dels=0.00;FS=9.636;HaplotypeScore=0.9757;MLEAC=3;MLEAF=0.375;MQ=29.17;MQ0=0;MQRankSum=0.724;QD=5.54;ReadPosRankSum=0.080;SB=-7.582e+01 GT:AD:DP:GQ:PL 0/0:11,0:11:21:0,21,210 0/1:6,2:8:60:60,0,106 0/1:9,4:13:66:66,0,122 0/1:6,4:10:89:89,0,92 +chr1 179557585 . A T 94.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.263;DP=144;Dels=0.00;FS=52.521;HaplotypeScore=6.5595;MLEAC=1;MLEAF=0.125;MQ=27.00;MQ0=0;MQRankSum=-0.324;QD=2.85;ReadPosRankSum=-3.002;SB=-3.387e+00 GT:AD:DP:GQ:PL 0/1:26,7:33:99:129,0,521 0/0:39,3:42:0:0,0,737 0/0:33,2:35:55:0,55,790 0/0:33,1:34:54:0,54,763 +chr1 179557631 . A T 260.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.978;DP=179;Dels=0.00;FS=108.291;HaplotypeScore=6.3414;MLEAC=4;MLEAF=0.500;MQ=22.59;MQ0=0;MQRankSum=0.816;QD=1.46;ReadPosRankSum=2.413;SB=-1.296e-02 GT:AD:DP:GQ:PL 0/1:41,7:48:87:87,0,502 0/1:36,6:42:35:35,0,511 0/1:38,8:46:99:115,0,370 0/1:35,8:43:66:66,0,488 +chr1 179561872 . A G 51.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.579;DP=93;Dels=0.03;FS=0.000;HaplotypeScore=40.0142;MLEAC=2;MLEAF=0.250;MQ=23.27;MQ0=0;MQRankSum=0.337;QD=1.13;ReadPosRankSum=0.445;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,0:25:33:0,33,319 0/1:21,4:26:66:66,0,211 0/0:19,0:20:9:0,9,93 0/1:17,2:19:27:27,0,183 +chr1 179983665 rs2501607 G A 1902.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.592;DB;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.2439;MLEAC=4;MLEAF=0.500;MQ=39.10;MQ0=0;MQRankSum=-1.576;QD=22.65;ReadPosRankSum=0.413;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,156,2102 1/1:0,31:31:93:1251,93,0 0/1:21,18:39:99:578,0,749 0/1:10,4:14:99:122,0,363 +chr1 180006165 . A C 42.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.658;DP=149;Dels=0.00;FS=24.146;HaplotypeScore=8.6202;MLEAC=1;MLEAF=0.125;MQ=34.34;MQ0=0;MQRankSum=-2.802;QD=1.79;ReadPosRankSum=-0.327;SB=0.020 GT:AD:DP:GQ:PL 0/0:32,1:33:78:0,78,1026 0/0:45,0:45:96:0,96,1146 0/0:47,0:47:99:0,111,1360 0/1:18,5:24:79:79,0,491 +chr1 180059811 rs10798729 A C 1164.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.482;DB;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.3325;MLEAC=4;MLEAF=0.500;MQ=35.49;MQ0=0;MQRankSum=-3.711;QD=18.20;ReadPosRankSum=-0.270;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,0:28:84:0,84,1091 1/1:2,24:26:72:827,72,0 0/1:18,11:29:99:333,0,578 0/1:7,2:9:53:53,0,226 +chr1 181205551 . A T 40.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.543;DP=247;Dels=0.00;FS=41.711;HaplotypeScore=1.7317;MLEAC=2;MLEAF=0.250;MQ=36.05;MQ0=0;MQRankSum=-2.087;QD=0.38;ReadPosRankSum=-0.819;SB=-1.602e+00 GT:AD:DP:GQ:PL 0/1:39,5:44:55:55,0,1146 0/1:56,7:64:27:27,0,1729 0/0:76,0:76:99:0,192,2394 0/0:60,3:63:54:0,54,1578 +chr1 181548243 . A G 164.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.754;DP=194;Dels=0.02;FS=88.072;HaplotypeScore=47.6974;MLEAC=3;MLEAF=0.375;MQ=27.04;MQ0=0;MQRankSum=-1.634;QD=1.16;ReadPosRankSum=2.763;SB=0.754 GT:AD:DP:GQ:PL 0/0:49,2:51:23:0,23,941 0/1:38,4:44:54:54,0,421 0/1:48,7:55:80:80,0,681 0/1:33,5:40:74:74,0,482 +chr1 181714483 . T C 577.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.602;DP=121;Dels=0.00;FS=109.105;HaplotypeScore=8.1680;MLEAC=4;MLEAF=0.500;MQ=25.92;MQ0=0;MQRankSum=3.711;QD=4.77;ReadPosRankSum=-1.593;SB=-1.842e+00 GT:AD:DP:GQ:PL 0/1:28,7:35:99:147,0,340 0/1:26,5:31:99:136,0,235 0/1:24,10:34:99:244,0,109 0/1:18,3:21:40:93,0,40 +chr1 181721265 rs2293991 C T 1656.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.887;DB;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=2.6738;MLEAC=3;MLEAF=0.375;MQ=33.52;MQ0=0;MQRankSum=-4.187;QD=10.97;ReadPosRankSum=1.541;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:40,21:61:99:456,0,1083 0/0:55,0:55:99:0,150,1906 0/1:20,23:43:99:640,0,448 0/1:23,24:47:99:604,0,593 +chr1 181763015 rs61814578 G A 490.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.850;DB;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.4978;MLEAC=3;MLEAF=0.375;MQ=38.47;MQ0=0;MQRankSum=0.251;QD=16.36;ReadPosRankSum=-1.537;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,7:12:99:261,0,110 0/0:12,0:12:36:0,36,479 0/1:4,5:9:52:173,0,52 0/1:6,3:9:99:100,0,182 +chr1 182554702 . T G 64.57 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.970;DP=174;Dels=0.00;FS=44.692;HaplotypeScore=2.4049;MLEAC=1;MLEAF=0.125;MQ=36.84;MQ0=0;MQRankSum=-3.136;QD=2.23;ReadPosRankSum=-1.042;SB=-5.976e+00 GT:AD:DP:GQ:PL 0/0:40,1:41:51:0,51,1042 0/0:47,3:51:3:0,3,1087 0/0:51,2:53:62:0,62,1253 0/1:24,4:29:99:100,0,258 +chr1 182554919 . T A 44.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.885;DP=157;Dels=0.00;FS=26.190;HaplotypeScore=1.9336;MLEAC=2;MLEAF=0.250;MQ=35.16;MQ0=0;MQRankSum=-2.651;QD=0.53;ReadPosRankSum=-1.688;SB=1.15 GT:AD:DP:GQ:PL 0/1:36,3:39:41:41,0,734 0/1:41,4:45:45:45,0,930 0/0:40,3:43:16:0,16,1109 0/0:29,1:30:29:0,29,770 +chr1 182775207 . T A 65.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.588;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.7441;MLEAC=3;MLEAF=0.375;MQ=33.93;MQ0=0;MQRankSum=-2.354;QD=1.73;ReadPosRankSum=0.651;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:20:20,0,122 0/1:14,3:17:56:56,0,372 0/0:17,0:17:33:0,33,448 0/1:11,2:13:33:33,0,263 +chr1 183084785 rs77322623 C A 36.37 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.445;DB;DP=156;Dels=0.01;FS=11.643;HaplotypeScore=1.7828;MLEAC=1;MLEAF=0.125;MQ=35.48;MQ0=0;MQRankSum=-2.187;QD=1.07;ReadPosRankSum=0.540;SB=-6.766e+00 GT:AD:DP:GQ:PL 0/0:40,3:43:8:0,8,1039 0/0:37,2:41:3:0,3,772 0/0:33,3:37:4:0,4,863 0/1:29,5:34:71:71,0,509 +chr1 183104079 rs2296298 C G 2303.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.516;DB;DP=171;Dels=0.03;FS=8.135;HaplotypeScore=3.5923;MLEAC=4;MLEAF=0.500;MQ=38.97;MQ0=0;MQRankSum=1.447;QD=13.47;ReadPosRankSum=4.226;SB=-1.059e+03 GT:AD:DP:GQ:PL 0/1:25,23:48:99:823,0,833 0/1:26,14:40:99:405,0,856 0/1:26,16:43:99:539,0,813 0/1:18,17:35:99:579,0,517 +chr1 183105399 rs2296296 C G 471.23 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.063;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=38.39;MQ0=0;MQRankSum=-2.331;QD=27.72;ReadPosRankSum=-1.575;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,5:8:99:183,0,107 1/1:0,4:4:12:156,12,0 1/1:0,1:1:3:27,3,0 1/1:0,4:4:12:148,12,0 +chr1 183176943 rs192991382 A T 59.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.833;DB;DP=41;Dels=0.00;FS=2.865;HaplotypeScore=3.9153;MLEAC=2;MLEAF=0.250;MQ=21.59;MQ0=0;MQRankSum=0.395;QD=2.72;ReadPosRankSum=2.149;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:13:33:69,0,33 0/0:15,0:15:12:0,12,108 1/1:6,3:9:3:33,3,0 0/0:4,0:4:6:0,6,47 +chr1 183194885 . C A 76.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.117;DP=106;Dels=0.03;FS=0.000;HaplotypeScore=16.2454;MLEAC=3;MLEAF=0.375;MQ=26.64;MQ0=0;MQRankSum=-0.217;QD=1.04;ReadPosRankSum=0.417;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:29,2:31:21:0,21,213 0/1:23,3:26:56:56,0,125 0/1:22,2:28:35:35,0,125 0/1:16,2:18:29:29,0,75 +chr1 183195894 . A C 90.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-7.347;DP=393;Dels=0.00;FS=106.769;HaplotypeScore=4.4143;MLEAC=2;MLEAF=0.250;MQ=37.11;MQ0=0;MQRankSum=-6.925;QD=0.50;ReadPosRankSum=2.413;SB=-1.437e+00 GT:AD:DP:GQ:PL 0/1:90,9:99:15:15,0,2702 0/0:89,7:97:45:0,45,2782 0/0:109,8:117:80:0,80,3423 0/1:69,10:79:99:116,0,1970 +chr1 183542443 . C T 189.36 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.035;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=5.6810;MLEAC=1;MLEAF=0.125;MQ=35.14;MQ0=0;MQRankSum=-0.648;QD=5.12;ReadPosRankSum=-0.398;SB=0.054 GT:AD:DP:GQ:PL 0/0:48,3:51:13:0,13,1055 0/0:43,3:46:6:0,6,1036 0/0:42,0:42:90:0,90,1121 0/1:27,10:37:99:225,0,503 +chr1 184679645 . C T 459.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.349;DP=150;Dels=0.01;FS=164.942;HaplotypeScore=10.1725;MLEAC=4;MLEAF=0.500;MQ=34.22;MQ0=0;MQRankSum=1.230;QD=3.06;ReadPosRankSum=1.339;SB=-1.443e+00 GT:AD:DP:GQ:PL 0/1:39,7:46:99:139,0,1086 0/1:36,7:43:99:130,0,858 0/1:32,6:39:99:122,0,932 0/1:17,4:21:99:111,0,406 +chr1 185200912 . T C 115.90 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.692;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=5.8835;MLEAC=3;MLEAF=0.500;MQ=29.59;MQ0=0;MQRankSum=-0.249;QD=2.52;ReadPosRankSum=0.913;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:13:65:94,0,65 0/1:11,1:12:8:8,0,117 0/1:17,3:20:52:52,0,215 ./. +chr1 185267114 rs10174 A G 507 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.975;DB;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=41.74;MQ0=0;MQRankSum=-2.198;QD=15.36;ReadPosRankSum=0.272;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:33,0:33:93:0,93,1250 0/1:17,16:33:99:543,0,600 0/0:32,0:32:96:0,96,1252 0/0:8,0:8:24:0,24,332 +chr1 185897797 . C A 83.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.775;DP=202;Dels=0.00;FS=11.719;HaplotypeScore=6.3786;MLEAC=1;MLEAF=0.125;MQ=35.55;MQ0=0;MQRankSum=-2.413;QD=2.33;ReadPosRankSum=0.260;SB=0.165 GT:AD:DP:GQ:PL 0/0:56,1:57:86:0,86,1281 0/0:50,2:53:36:0,36,1241 0/0:53,2:55:44:0,44,1110 0/1:30,6:36:99:120,0,420 +chr1 185931727 . A C 342.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.508;DP=204;Dels=0.00;FS=153.028;HaplotypeScore=10.3345;MLEAC=4;MLEAF=0.500;MQ=36.52;MQ0=0;MQRankSum=-5.848;QD=1.68;ReadPosRankSum=3.510;SB=-1.300e+00 GT:AD:DP:GQ:PL 0/1:42,5:47:79:79,0,852 0/1:62,11:73:99:109,0,1612 0/1:41,11:54:99:178,0,1084 0/1:26,3:30:19:19,0,337 +chr1 186265948 rs1293987 T A 907.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.266;DB;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.6404;MLEAC=5;MLEAF=0.625;MQ=28.68;MQ0=0;MQRankSum=1.740;QD=18.15;ReadPosRankSum=3.048;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,7:15:99:182,0,117 1/1:1,15:16:42:486,42,0 0/1:4,9:13:59:262,0,59 0/1:5,1:6:23:23,0,40 +chr1 186276852 . C T 94.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.273;DP=126;Dels=0.00;FS=46.455;HaplotypeScore=13.0763;MLEAC=2;MLEAF=0.250;MQ=23.68;MQ0=0;MQRankSum=-1.163;QD=1.53;ReadPosRankSum=1.019;SB=1.82 GT:AD:DP:GQ:PL 0/0:26,4:30:42:0,42,483 0/1:30,5:35:39:39,0,380 0/1:20,7:27:97:97,0,279 0/0:31,3:34:19:0,19,395 +chr1 186316732 rs12739797 A C 34.24 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.480;DB;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.1928;MLEAC=2;MLEAF=0.333;MQ=30.34;MQ0=0;MQRankSum=0.898;QD=5.71;ReadPosRankSum=0.480;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,85 0/1:2,1:3:36:38,0,36 ./. 0/1:2,1:3:34:34,0,38 +chr1 186375359 . T A 971.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.609;DP=287;Dels=0.01;FS=199.043;HaplotypeScore=3.6451;MLEAC=4;MLEAF=0.500;MQ=37.23;MQ0=0;MQRankSum=-4.131;QD=3.39;ReadPosRankSum=0.538;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:69,15:84:99:327,0,1488 0/1:67,11:78:99:205,0,1671 0/1:78,14:92:99:232,0,1742 0/1:21,9:30:99:250,0,394 +chr1 186863332 . A G 84.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.020;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.0847;MLEAC=2;MLEAF=0.250;MQ=28.14;MQ0=0;MQRankSum=-0.180;QD=1.47;ReadPosRankSum=3.022;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/0:21,0:21:12:0,12,128 0/1:25,3:28:66:66,0,242 0/1:24,3:29:58:58,0,159 0/0:8,0:9:3:0,3,23 +chr1 189959093 rs78356759 A G 355.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.202;DB;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=35.91;MQ0=0;MQRankSum=1.617;QD=11.12;ReadPosRankSum=-1.328;SB=-3.607e+01 GT:AD:DP:GQ:PL 0/0:10,0:10:24:0,24,318 0/1:7,2:9:45:45,0,207 0/1:7,6:13:99:178,0,210 0/1:4,5:10:87:176,0,87 +chr1 192216486 rs1175147 T C 129.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.134;DB;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=3.6931;MLEAC=3;MLEAF=0.375;MQ=15.70;MQ0=0;MQRankSum=-1.618;QD=1.29;ReadPosRankSum=0.937;SB=-7.371e+01 GT:AD:DP:GQ:PL 0/1:15,8:24:61:61,0,172 0/1:24,14:38:92:92,0,132 0/1:22,15:37:19:19,0,199 0/0:12,2:14:12:0,12,113 +chr1 192548559 rs2816308 G C 237.63 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.243;DB;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=0.4338;MLEAC=5;MLEAF=0.625;MQ=26.20;MQ0=0;MQRankSum=1.821;QD=21.60;ReadPosRankSum=0.400;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:73,6,0 0/0:11,0:11:12:0,12,136 1/1:0,4:4:12:152,12,0 0/1:2,2:4:34:61,0,34 +chr1 193065981 . C T 34.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.581;DP=40;Dels=0.05;FS=0.000;HaplotypeScore=2.9178;MLEAC=2;MLEAF=0.250;MQ=29.60;MQ0=0;MQRankSum=-1.898;QD=1.89;ReadPosRankSum=1.356;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:52:52,0,191 0/0:9,0:9:9:0,9,90 0/0:11,0:11:18:0,18,184 0/1:2,1:3:23:23,0,36 +chr1 193149957 . G T 82.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.361;DP=145;Dels=0.01;FS=24.734;HaplotypeScore=5.8762;MLEAC=3;MLEAF=0.375;MQ=36.24;MQ0=0;MQRankSum=-3.378;QD=0.86;ReadPosRankSum=1.080;SB=-2.991e-01 GT:AD:DP:GQ:PL 0/1:36,4:41:52:52,0,882 0/0:46,2:49:51:0,51,1211 0/1:38,5:44:63:63,0,700 0/1:8,1:9:10:10,0,180 +chr1 196880099 . T A 71.01 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.536;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.6614;MLEAC=3;MLEAF=0.500;MQ=27.07;MQ0=0;MQRankSum=0.929;QD=7.10;ReadPosRankSum=0.289;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:66,6,0 0/1:4,2:6:46:46,0,65 0/0:3,0:3:9:0,9,88 ./. +chr1 197009798 rs5998 A G 834.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.483;DB;DP=120;Dels=0.01;FS=1.877;HaplotypeScore=4.7384;MLEAC=3;MLEAF=0.375;MQ=33.44;MQ0=0;MQRankSum=-3.425;QD=13.46;ReadPosRankSum=1.972;SB=-2.638e+02 GT:AD:DP:GQ:PL 1/1:4,16:20:36:396,36,0 0/0:51,0:51:99:0,135,1738 0/1:22,19:41:99:488,0,637 0/0:7,0:7:21:0,21,261 +chr1 197091537 rs4915337 A T 2636.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.691;DB;DP=90;Dels=0.01;FS=1.901;HaplotypeScore=0.2493;MLEAC=8;MLEAF=1.00;MQ=35.43;MQ0=0;MQRankSum=1.864;QD=29.30;ReadPosRankSum=3.709;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:72:939,72,0 1/1:3,25:28:57:773,57,0 1/1:2,20:22:35:697,35,0 1/1:2,7:9:21:267,21,0 +chr1 197107864 . A C 120.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.068;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=0.250;MQ=26.09;MQ0=0;MQRankSum=0.300;QD=1.77;ReadPosRankSum=0.207;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,0:26:30:0,30,304 0/1:30,5:35:60:60,0,268 0/1:28,5:33:99:102,0,276 0/0:9,0:9:15:0,15,146 +chr1 197407942 rs980371 A G 784.61 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.589;DB;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=34.72;MQ0=0;MQRankSum=1.589;QD=32.69;ReadPosRankSum=-0.144;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,9:10:24:327,24,0 1/1:0,6:6:18:237,18,0 1/1:0,7:7:18:223,18,0 1/1:0,1:1:3:36,3,0 +chr1 197896808 . T A 82.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.592;DP=409;Dels=0.00;FS=17.719;HaplotypeScore=5.5599;MLEAC=1;MLEAF=0.125;MQ=38.13;MQ0=0;MQRankSum=-1.397;QD=0.76;ReadPosRankSum=-2.044;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:113,0:113:99:0,280,3361 0/0:94,3:97:99:0,116,2282 0/0:88,2:90:99:0,191,2876 0/1:96,13:109:99:119,0,2508 +chr1 198222224 . A T 132.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.478;DP=205;Dels=0.00;FS=86.568;HaplotypeScore=13.3404;MLEAC=3;MLEAF=0.375;MQ=34.57;MQ0=0;MQRankSum=-3.865;QD=1.04;ReadPosRankSum=-1.098;SB=-9.551e-01 GT:AD:DP:GQ:PL 0/1:57,7:64:87:87,0,1422 0/1:45,8:53:66:66,0,1204 0/0:71,6:77:4:0,4,1817 0/1:10,1:11:21:21,0,128 +chr1 198703306 rs6683595 C T 636.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.749;DB;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=1.4492;MLEAC=4;MLEAF=0.500;MQ=33.34;MQ0=0;MQRankSum=-1.005;QD=11.37;ReadPosRankSum=-2.678;SB=-2.520e+01 GT:AD:DP:GQ:PL 0/1:1,11:12:2:323,0,2 0/1:13,4:17:72:72,0,310 0/1:9,8:17:99:246,0,180 0/1:5,3:8:37:37,0,145 +chr1 199357095 rs11583106 T G 85.48 . AC=3;AF=0.750;AN=4;BaseQRankSum=-3.013;DB;DP=57;Dels=0.02;FS=8.439;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=10.51;MQ0=0;MQRankSum=2.344;QD=2.85;ReadPosRankSum=2.469;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:12,7:19:9:83,9,0 0/1:5,6:11:13:39,0,13 +chr1 200143281 rs1060060 C T 453.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.945;DB;DP=158;Dels=0.01;FS=2.382;HaplotypeScore=0.7866;MLEAC=1;MLEAF=0.125;MQ=38.62;MQ0=0;MQRankSum=-2.267;QD=12.27;ReadPosRankSum=-0.179;SB=-1.250e+02 GT:AD:DP:GQ:PL 0/1:21,15:37:99:490,0,549 0/0:44,0:44:99:0,132,1752 0/0:44,0:44:99:0,117,1562 0/0:32,0:32:78:0,78,951 +chr1 200569460 . T A 809.91 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.098;DP=91;Dels=0.03;FS=7.999;HaplotypeScore=23.0903;MLEAC=4;MLEAF=0.500;MQ=28.04;MQ0=0;MQRankSum=2.822;QD=8.90;ReadPosRankSum=-1.570;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,9:18:99:212,0,103 0/1:19,7:27:8:176,0,8 0/1:13,13:28:37:320,0,37 0/1:10,5:15:84:144,0,84 +chr1 200776500 rs79456176 T G 146.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.473;DB;DP=103;Dels=0.00;FS=8.672;HaplotypeScore=0.6442;MLEAC=1;MLEAF=0.125;MQ=37.02;MQ0=0;MQRankSum=-0.770;QD=5.21;ReadPosRankSum=0.392;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/0:32,0:32:87:0,87,1154 0/1:21,7:28:99:182,0,680 0/0:35,0:35:99:0,102,1325 0/0:8,0:8:18:0,18,228 +chr1 200877850 rs41299637 T G 619.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=4.711;DB;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=1.8479;MLEAC=1;MLEAF=0.125;MQ=38.05;MQ0=0;MQRankSum=-2.765;QD=13.19;ReadPosRankSum=0.719;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:25,21:47:99:656,0,690 0/0:53,0:53:99:0,150,1965 0/0:59,0:59:99:0,156,2043 0/0:55,0:55:99:0,141,1856 +chr1 200960774 . A G 54.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.849;DP=52;Dels=0.04;FS=17.646;HaplotypeScore=8.6635;MLEAC=3;MLEAF=0.375;MQ=20.96;MQ0=0;MQRankSum=-0.370;QD=1.43;ReadPosRankSum=1.463;SB=-2.613e+00 GT:AD:DP:GQ:PL 0/1:7,4:11:30:30,0,109 0/0:12,2:14:12:0,12,121 0/1:13,3:17:59:59,0,112 0/1:7,1:8:7:7,0,110 +chr1 200974482 . A C 276.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.129;DP=116;Dels=0.01;FS=91.506;HaplotypeScore=8.7811;MLEAC=4;MLEAF=0.500;MQ=31.78;MQ0=0;MQRankSum=-2.948;QD=2.38;ReadPosRankSum=-0.767;SB=-8.342e-02 GT:AD:DP:GQ:PL 0/1:29,3:32:17:17,0,909 0/1:15,7:22:99:129,0,398 0/1:31,6:37:92:92,0,764 0/1:18,6:24:81:81,0,394 +chr1 201058692 rs2296384 T C 453.72 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.887;DB;DP=19;Dels=0.00;FS=22.304;HaplotypeScore=1.0171;MLEAC=8;MLEAF=1.00;MQ=32.85;MQ0=0;MQRankSum=2.887;QD=23.88;ReadPosRankSum=-0.170;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,3:5:9:117,9,0 1/1:1,5:6:12:164,12,0 1/1:1,2:3:6:86,6,0 1/1:2,3:5:9:125,9,0 +chr1 201096708 rs75036828 G A 41.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.86;MQ0=0;MQRankSum=0.736;QD=13.92;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:73,6,0 ./. ./. ./. +chr1 201165015 . A C 103.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.016;DP=139;Dels=0.01;FS=34.034;HaplotypeScore=11.3833;MLEAC=2;MLEAF=0.250;MQ=31.60;MQ0=0;MQRankSum=-1.861;QD=1.45;ReadPosRankSum=-0.016;SB=-8.991e-01 GT:AD:DP:GQ:PL 0/1:28,2:30:9:9,0,499 0/0:28,0:28:42:0,42,462 0/0:40,0:40:84:0,84,1042 0/1:32,8:40:99:134,0,564 +chr1 201166435 rs11589317 T C 1596.67 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.631;DB;DP=58;Dels=0.00;FS=12.684;HaplotypeScore=1.5343;MLEAC=8;MLEAF=1.00;MQ=33.99;MQ0=0;MQRankSum=3.826;QD=27.53;ReadPosRankSum=-0.486;SB=-1.245e+02 GT:AD:DP:GQ:PL 1/1:2,10:12:3:368,3,0 1/1:6,16:22:20:570,20,0 1/1:3,14:17:42:538,42,0 1/1:3,4:7:12:159,12,0 +chr1 201337170 rs3729842 A G 290.17 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.451;DB;DP=17;Dels=0.00;FS=6.368;HaplotypeScore=0.4771;MLEAC=8;MLEAF=1.00;MQ=27.62;MQ0=0;MQRankSum=2.282;QD=17.07;ReadPosRankSum=-0.423;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,3:7:9:113,9,0 1/1:1,2:3:6:75,6,0 1/1:0,3:3:6:64,6,0 1/1:2,2:4:6:76,6,0 +chr1 201351102 . T A 32.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.139;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9519;MLEAC=3;MLEAF=0.375;MQ=30.08;MQ0=0;MQRankSum=-2.987;QD=0.92;ReadPosRankSum=2.150;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:14:55:55,0,240 0/1:9,4:13:10:10,0,156 0/0:11,0:11:24:0,24,296 0/1:7,1:8:9:9,0,183 +chr1 201465270 . C G 46.16 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.743;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=4.6861;MLEAC=2;MLEAF=0.250;MQ=21.99;MQ0=0;MQRankSum=1.474;QD=1.07;ReadPosRankSum=-1.397;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,5:24:77:77,0,201 0/1:17,1:18:9:9,0,172 0/0:24,0:24:27:0,27,269 0/0:21,0:21:21:0,21,197 +chr1 201618028 . G A 123.41 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.854;DP=32;Dels=0.03;FS=4.523;HaplotypeScore=8.9203;MLEAC=6;MLEAF=0.750;MQ=17.64;MQ0=0;MQRankSum=0.452;QD=3.86;ReadPosRankSum=0.050;SB=1.47 GT:AD:DP:GQ:PL 1/1:4,1:5:3:26,3,0 0/1:3,2:5:14:50,0,14 0/1:8,4:12:32:43,0,32 1/1:5,4:9:6:47,6,0 +chr1 201779701 . A G 129.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.116;DP=85;Dels=0.04;FS=10.089;HaplotypeScore=6.2536;MLEAC=3;MLEAF=0.375;MQ=32.89;MQ0=0;MQRankSum=-0.348;QD=2.09;ReadPosRankSum=1.230;SB=-8.069e+01 GT:AD:DP:GQ:PL 0/1:12,3:15:79:79,0,196 0/1:21,2:23:27:27,0,312 0/0:23,0:23:30:0,30,362 0/1:17,4:21:67:67,0,252 +chr1 201828052 . A C 53.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.125;DP=138;Dels=0.00;FS=69.954;HaplotypeScore=3.1889;MLEAC=2;MLEAF=0.250;MQ=35.14;MQ0=0;MQRankSum=-2.141;QD=0.84;ReadPosRankSum=2.024;SB=-2.767e+00 GT:AD:DP:GQ:PL 0/1:32,3:36:10:10,0,872 0/0:35,0:35:87:0,87,1068 0/0:35,3:39:25:0,25,1010 0/1:23,5:28:84:84,0,634 +chr1 201860414 . G C 38.45 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.349;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.1085;MLEAC=2;MLEAF=0.250;MQ=31.21;MQ0=0;MQRankSum=-1.009;QD=1.10;ReadPosRankSum=-0.377;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,2:21:12:12,0,488 0/0:16,1:17:5:0,5,349 0/0:14,1:15:3:0,3,318 0/1:11,3:14:65:65,0,245 +chr1 202104516 . A T 212.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.795;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7178;MLEAC=4;MLEAF=0.500;MQ=31.43;MQ0=0;MQRankSum=-1.559;QD=1.46;ReadPosRankSum=1.710;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,5:40:96:96,0,318 0/1:40,5:45:62:62,0,585 0/1:33,2:35:2:2,0,499 0/1:19,5:25:93:93,0,267 +chr1 202166719 . T C 54.33 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.468;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=5.0889;MLEAC=4;MLEAF=0.500;MQ=18.44;MQ0=0;MQRankSum=1.779;QD=2.09;ReadPosRankSum=1.904;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:32:47,0,32 0/1:11,2:13:20:23,0,20 0/0:8,0:8:3:0,3,23 1/1:2,1:3:3:26,3,0 +chr1 202549539 . T C 35.54 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.651;DP=68;Dels=0.00;FS=2.428;HaplotypeScore=3.4710;MLEAC=3;MLEAF=0.375;MQ=25.09;MQ0=0;MQRankSum=-1.211;QD=0.67;ReadPosRankSum=-0.556;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:25:25,0,254 0/0:13,2:15:21:0,21,226 0/1:16,3:19:47:47,0,251 0/1:17,1:18:5:5,0,238 +chr1 202878072 . A T 48.67 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.413;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=26.1792;MLEAC=1;MLEAF=0.125;MQ=22.52;MQ0=0;MQRankSum=0.531;QD=1.13;ReadPosRankSum=2.432;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:36,3:41:12:0,12,360 0/0:38,1:39:22:0,22,485 0/1:33,9:43:84:84,0,318 0/0:37,2:39:3:0,3,308 +chr1 203012906 rs4950908 G A 223.70 . AC=6;AF=1.00;AN=6;DB;DP=9;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=30.02;MQ0=0;QD=27.96;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,4:4:12:151,12,0 1/1:0,2:2:6:73,6,0 ./. 1/1:1,1:2:3:36,3,0 +chr1 203192249 . T A 541.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.697;DP=240;Dels=0.00;FS=127.235;HaplotypeScore=2.8782;MLEAC=4;MLEAF=0.500;MQ=36.52;MQ0=0;MQRankSum=-0.970;QD=2.25;ReadPosRankSum=0.917;SB=-1.528e+00 GT:AD:DP:GQ:PL 0/1:42,8:50:99:172,0,1010 0/1:55,11:66:99:217,0,1386 0/1:64,5:69:3:3,0,1584 0/1:46,9:55:99:190,0,1189 +chr1 203467899 . G C 166.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.378;DP=161;Dels=0.01;FS=62.736;HaplotypeScore=6.3237;MLEAC=3;MLEAF=0.375;MQ=34.42;MQ0=0;MQRankSum=-3.747;QD=1.31;ReadPosRankSum=-0.416;SB=1.78 GT:AD:DP:GQ:PL 0/0:32,1:34:37:0,37,759 0/1:27,4:31:83:83,0,507 0/1:40,4:44:26:26,0,976 0/1:43,7:50:99:101,0,859 +chr1 203468044 . T C 185.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.245;DP=86;Dels=0.00;FS=4.649;HaplotypeScore=4.0285;MLEAC=3;MLEAF=0.375;MQ=29.21;MQ0=0;MQRankSum=0.197;QD=2.65;ReadPosRankSum=0.182;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:42:0,42,518 0/1:21,3:24:61:61,0,354 0/1:21,4:25:85:85,0,366 0/1:17,4:21:83:83,0,266 +chr1 203667550 . A T 41.71 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.046;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=13.7286;MLEAC=2;MLEAF=0.250;MQ=24.43;MQ0=0;MQRankSum=1.924;QD=1.39;ReadPosRankSum=-0.169;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:24:24,0,164 0/1:14,3:17:59:59,0,246 0/0:15,0:15:27:0,27,258 0/0:10,0:12:15:0,15,141 +chr1 203676037 . T A 75.03 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.387;DP=15;Dels=0.00;FS=3.424;HaplotypeScore=0.9933;MLEAC=7;MLEAF=0.875;MQ=23.01;MQ0=0;MQRankSum=1.408;QD=5.00;ReadPosRankSum=1.749;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,1:5:3:33,3,0 1/1:0,2:2:3:26,3,0 0/1:3,1:4:24:24,0,55 1/1:3,1:4:3:32,3,0 +chr1 203678667 . G A 94.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.081;DP=138;Dels=0.00;FS=52.171;HaplotypeScore=35.2775;MLEAC=4;MLEAF=0.500;MQ=26.37;MQ0=0;MQRankSum=0.338;QD=0.69;ReadPosRankSum=1.110;SB=-2.054e+00 GT:AD:DP:GQ:PL 0/1:35,6:41:75:75,0,565 0/1:27,2:29:12:12,0,391 0/1:32,5:37:46:46,0,575 0/1:29,1:31:2:2,0,238 +chr1 203787881 . A T 34.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.626;DP=82;Dels=0.01;FS=3.115;HaplotypeScore=6.0620;MLEAC=3;MLEAF=0.375;MQ=25.83;MQ0=0;MQRankSum=-2.005;QD=0.58;ReadPosRankSum=1.733;SB=-4.385e-02 GT:AD:DP:GQ:PL 0/1:22,3:25:20:20,0,218 0/1:16,5:22:45:45,0,170 0/0:20,2:22:5:0,5,219 0/1:10,2:12:11:11,0,161 +chr1 203820232 . A G 307.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.487;DP=227;Dels=0.00;FS=52.421;HaplotypeScore=14.0382;MLEAC=4;MLEAF=0.500;MQ=19.63;MQ0=0;MQRankSum=3.343;QD=1.35;ReadPosRankSum=4.712;SB=-1.352e-02 GT:AD:DP:GQ:PL 0/1:47,11:58:99:164,0,394 0/1:56,14:70:33:33,0,512 0/1:52,14:66:96:96,0,308 0/1:26,7:33:57:57,0,203 +chr1 203831231 . A T 104.39 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.562;DP=54;Dels=0.00;FS=5.479;HaplotypeScore=2.4501;MLEAC=5;MLEAF=0.625;MQ=29.14;MQ0=0;MQRankSum=-0.073;QD=1.93;ReadPosRankSum=0.268;SB=-5.125e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:43:43,0,141 0/1:15,2:17:32:32,0,213 0/1:17,1:18:17:17,0,134 1/1:3,3:6:6:56,6,0 +chr1 203842078 . A T 65.27 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.516;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.6479;MLEAC=5;MLEAF=0.625;MQ=20.17;MQ0=0;MQRankSum=2.526;QD=3.84;ReadPosRankSum=-2.526;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:3:0,3,33 0/1:7,1:8:31:31,0,52 1/1:2,1:3:3:40,3,0 1/1:4,1:6:3:36,3,0 +chr1 204000843 rs7525696 G A 115.67 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.754;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=20.93;MQ0=0;MQRankSum=1.754;QD=11.57;ReadPosRankSum=0.550;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:3,2:5:6:75,6,0 1/1:1,1:2:3:37,3,0 1/1:2,1:3:3:39,3,0 +chr1 204126526 . A G 54.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.388;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=6.8916;MLEAC=2;MLEAF=0.250;MQ=24.80;MQ0=0;MQRankSum=1.108;QD=0.89;ReadPosRankSum=0.306;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:29,2:31:24:0,24,507 0/1:28,4:32:80:80,0,242 0/0:35,2:37:37:0,37,577 0/1:25,3:28:16:16,0,248 +chr1 204128832 rs11571084 C T 166.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.869;DB;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.2500;MLEAC=3;MLEAF=0.375;MQ=36.57;MQ0=0;MQRankSum=-1.687;QD=6.41;ReadPosRankSum=-0.296;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:45:0,45,558 0/1:3,3:6:61:104,0,61 0/1:7,2:9:58:58,0,224 0/1:8,3:11:48:48,0,217 +chr1 204230581 rs3795569 G A 850.11 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.275;DB;DP=56;Dels=0.00;FS=2.354;HaplotypeScore=1.2017;MLEAC=4;MLEAF=0.500;MQ=32.69;MQ0=0;MQRankSum=2.786;QD=20.24;ReadPosRankSum=-0.328;SB=-3.045e+02 GT:AD:DP:GQ:PL 1/1:2,15:17:14:556,14,0 0/0:14,0:14:33:0,33,355 0/1:9,6:15:99:181,0,249 0/1:4,6:10:67:161,0,67 +chr1 204501383 rs4252697 C T 581.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=3.612;DB;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.1799;MLEAC=2;MLEAF=0.250;MQ=38.82;MQ0=0;MQRankSum=-3.316;QD=8.08;ReadPosRankSum=0.988;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:24,14:38:99:349,0,805 0/1:24,10:34:99:274,0,851 0/0:44,0:44:99:0,126,1685 0/0:12,0:12:36:0,36,460 +chr1 204588662 . G T 164.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.849;DP=234;Dels=0.00;FS=43.914;HaplotypeScore=0.7479;MLEAC=2;MLEAF=0.250;MQ=38.25;MQ0=0;MQRankSum=-4.772;QD=1.51;ReadPosRankSum=-2.884;SB=-3.828e-01 GT:AD:DP:GQ:PL 0/1:45,6:51:51:51,0,1359 0/0:54,3:57:63:0,63,1845 0/0:66,2:68:99:0,104,2137 0/1:49,9:58:99:155,0,1611 +chr1 204942542 . T G 85.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.153;DP=113;Dels=0.00;FS=4.562;HaplotypeScore=2.8821;MLEAC=2;MLEAF=0.250;MQ=30.80;MQ0=0;MQRankSum=-4.001;QD=1.34;ReadPosRankSum=-0.084;SB=-2.611e+00 GT:AD:DP:GQ:PL 0/0:24,2:26:0:0,0,564 0/1:23,6:29:94:94,0,685 0/1:30,5:35:31:31,0,673 0/0:23,0:23:45:0,45,527 +chr1 204949583 . C A 31.30 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.180;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.1378;MLEAC=1;MLEAF=0.125;MQ=35.46;MQ0=0;MQRankSum=-2.338;QD=2.61;ReadPosRankSum=-0.116;SB=-9.095e-03 GT:AD:DP:GQ:PL 0/0:12,0:12:27:0,27,367 0/0:3,1:4:6:0,6,65 0/0:16,0:16:45:0,45,533 0/1:9,3:12:67:67,0,176 +chr1 204978643 rs78993506 C A 2517.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.375;DB;DP=176;Dels=0.00;FS=0.631;HaplotypeScore=2.6189;MLEAC=5;MLEAF=0.625;MQ=34.16;MQ0=0;MQRankSum=-2.149;QD=14.30;ReadPosRankSum=-0.020;SB=-5.910e+02 GT:AD:DP:GQ:PL 0/1:32,15:47:99:427,0,1035 1/1:5,35:40:58:1195,58,0 0/1:28,20:48:99:601,0,734 0/1:27,14:41:99:340,0,722 +chr1 205074424 rs3738155 C T 188.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.671;DB;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.2892;MLEAC=3;MLEAF=0.375;MQ=31.98;MQ0=0;MQRankSum=-1.174;QD=5.90;ReadPosRankSum=0.461;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:66:66,0,372 0/1:6,3:9:86:86,0,119 0/1:5,3:8:79:79,0,136 0/0:2,0:2:6:0,6,77 +chr1 205130413 rs3851294 A G 4202.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.751;DB;DP=163;Dels=0.01;FS=22.320;HaplotypeScore=11.0807;MLEAC=8;MLEAF=1.00;MQ=32.22;MQ0=0;MQRankSum=1.834;QD=25.78;ReadPosRankSum=2.339;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:10,27:37:81:1020,81,0 1/1:8,30:39:68:1058,68,0 1/1:10,41:51:64:1366,64,0 1/1:10,23:34:60:758,60,0 +chr1 205156734 . T C 41.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.530;DP=109;Dels=0.02;FS=10.561;HaplotypeScore=14.4839;MLEAC=2;MLEAF=0.250;MQ=35.98;MQ0=0;MQRankSum=-1.710;QD=0.72;ReadPosRankSum=-1.514;SB=-1.240e-01 GT:AD:DP:GQ:PL 0/1:33,3:36:21:21,0,868 0/0:23,0:23:42:0,42,513 0/0:27,0:27:48:0,48,652 0/1:18,3:21:62:62,0,339 +chr1 205417446 . T G 1247.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.351;DP=157;Dels=0.01;FS=124.460;HaplotypeScore=27.0333;MLEAC=4;MLEAF=0.500;MQ=30.02;MQ0=0;MQRankSum=4.943;QD=7.95;ReadPosRankSum=-0.115;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,12:37:99:335,0,403 0/1:29,13:43:99:362,0,254 0/1:31,10:42:99:242,0,471 0/1:20,14:34:99:351,0,197 +chr1 205499495 rs12035825 G A 782.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.383;DB;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8896;MLEAC=3;MLEAF=0.375;MQ=34.40;MQ0=0;MQRankSum=-0.266;QD=9.00;ReadPosRankSum=1.732;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/0:23,0:23:66:0,66,842 0/1:17,10:27:99:247,0,425 0/1:22,12:34:99:380,0,515 0/1:19,7:26:99:199,0,427 +chr1 205548874 . T G 50.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.627;DP=129;Dels=0.03;FS=115.214;HaplotypeScore=8.7004;MLEAC=2;MLEAF=0.250;MQ=33.81;MQ0=0;MQRankSum=-3.353;QD=0.78;ReadPosRankSum=-0.544;SB=0.328 GT:AD:DP:GQ:PL 0/1:27,5:32:76:76,0,847 0/1:27,3:30:16:16,0,836 0/0:34,2:36:48:0,48,936 0/0:25,2:27:66:0,66,815 +chr1 205561289 . C A 115.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.241;DP=82;Dels=0.00;FS=36.320;HaplotypeScore=1.6635;MLEAC=3;MLEAF=0.375;MQ=34.06;MQ0=0;MQRankSum=-0.193;QD=1.78;ReadPosRankSum=-0.713;SB=-6.059e-01 GT:AD:DP:GQ:PL 0/1:18,2:20:9:9,0,492 0/0:16,1:17:30:0,30,328 0/1:15,3:18:65:65,0,270 0/1:23,4:27:84:84,0,475 +chr1 205594652 rs11240541 G C 154.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.469;DB;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3173;MLEAC=1;MLEAF=0.125;MQ=29.45;MQ0=0;MQRankSum=-0.740;QD=5.00;ReadPosRankSum=2.636;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,0:28:78:0,78,858 0/1:22,9:31:99:191,0,527 0/0:43,0:43:99:0,111,1286 0/0:35,0:35:93:0,93,1003 +chr1 205594705 . G A 173.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.775;DP=111;Dels=0.02;FS=20.790;HaplotypeScore=4.0225;MLEAC=4;MLEAF=0.500;MQ=18.78;MQ0=0;MQRankSum=2.978;QD=1.56;ReadPosRankSum=0.572;SB=-9.661e-02 GT:AD:DP:GQ:PL 0/1:21,4:25:60:60,0,86 0/1:24,2:26:16:16,0,207 0/1:26,5:31:99:100,0,136 0/1:23,4:27:40:40,0,124 +chr1 205819034 . T A 32.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.570;DP=59;Dels=0.00;FS=19.345;HaplotypeScore=8.3218;MLEAC=1;MLEAF=0.125;MQ=29.59;MQ0=0;MQRankSum=-0.796;QD=2.29;ReadPosRankSum=-0.660;SB=-3.828e+00 GT:AD:DP:GQ:PL 0/1:11,3:14:68:68,0,146 0/0:16,0:17:36:0,36,404 0/0:12,0:12:12:0,12,165 0/0:15,0:16:33:0,33,402 +chr1 205899311 rs9438405 T A 104.27 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.394;DB;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.1009;MLEAC=2;MLEAF=0.250;MQ=31.39;MQ0=0;MQRankSum=0.099;QD=10.43;ReadPosRankSum=1.380;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:9:0,9,123 0/1:3,3:7:66:79,0,66 0/1:1,2:3:26:66,0,26 0/0:5,0:5:9:0,9,111 +chr1 206241439 . T C 276.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.076;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.5586;MLEAC=4;MLEAF=0.500;MQ=24.91;MQ0=0;MQRankSum=-0.589;QD=3.64;ReadPosRankSum=0.742;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:65:65,0,233 0/1:13,3:16:31:31,0,129 0/1:16,5:21:99:104,0,234 0/1:10,10:20:99:119,0,154 +chr1 206902471 rs45514798 G A 638.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.526;DB;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9729;MLEAC=4;MLEAF=0.500;MQ=36.01;MQ0=0;MQRankSum=-2.230;QD=10.64;ReadPosRankSum=0.629;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:99:170,0,358 0/1:12,8:20:99:223,0,276 0/1:12,7:19:99:225,0,366 0/1:3,2:5:63:63,0,80 +chr1 207039422 . C A 85.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.119;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.4941;MLEAC=1;MLEAF=0.125;MQ=34.52;MQ0=0;MQRankSum=-1.575;QD=2.15;ReadPosRankSum=2.327;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:45:0,45,561 0/0:25,0:25:63:0,63,768 0/0:25,0:25:42:0,42,504 0/1:34,6:40:99:122,0,778 +chr1 207132005 . C T 232.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.529;DP=243;Dels=0.00;FS=151.768;HaplotypeScore=5.0217;MLEAC=3;MLEAF=0.375;MQ=33.83;MQ0=0;MQRankSum=-4.542;QD=1.19;ReadPosRankSum=2.821;SB=0.779 GT:AD:DP:GQ:PL 0/0:43,4:47:38:0,38,1320 0/1:54,9:63:66:66,0,1682 0/1:66,9:75:45:45,0,1699 0/1:48,10:58:99:165,0,1326 +chr1 207135546 rs1572808 G A 356.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.394;DB;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.1707;MLEAC=1;MLEAF=0.125;MQ=41.60;MQ0=0;MQRankSum=-0.416;QD=8.50;ReadPosRankSum=-0.893;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,12:42:99:393,0,896 0/0:33,0:33:99:0,99,1401 0/0:38,0:38:99:0,111,1559 0/0:33,0:33:90:0,90,1172 +chr1 207195945 . T A 165.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.132;DP=95;Dels=0.03;FS=27.760;HaplotypeScore=5.6091;MLEAC=4;MLEAF=0.500;MQ=26.48;MQ0=0;MQRankSum=-0.876;QD=1.74;ReadPosRankSum=0.062;SB=-2.972e-02 GT:AD:DP:GQ:PL 0/1:20,3:24:39:39,0,418 0/1:19,2:21:23:23,0,280 0/1:18,4:22:55:55,0,381 0/1:20,5:25:91:91,0,244 +chr1 207758267 . GA G 324.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.194;DP=122;FS=3.112;HaplotypeScore=96.0374;MLEAC=4;MLEAF=0.500;MQ=21.72;MQ0=0;MQRankSum=0.649;QD=2.66;ReadPosRankSum=-2.455;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:23,4:19:99:136,0,126 0/1:25,5:17:76:76,0,220 0/1:26,2:16:20:20,0,173 0/1:18,5:12:50:144,0,50 +chr1 207870938 . G A 53.53 . AC=2;AF=0.333;AN=6;BaseQRankSum=-2.711;DP=263;Dels=0.00;FS=25.111;HaplotypeScore=3.1929;MLEAC=2;MLEAF=0.333;MQ=12.28;MQ0=0;MQRankSum=3.000;QD=0.43;ReadPosRankSum=0.235;SB=-1.248e-02 GT:AD:DP:GQ:PL 0/1:79,2:81:53:53,0,57 0/0:69,0:69:12:0,12,123 ./. 0/1:42,2:44:39:39,0,96 +chr1 207963629 . G C 31.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.800;DP=68;Dels=0.01;FS=22.897;HaplotypeScore=10.6171;MLEAC=3;MLEAF=0.375;MQ=21.62;MQ0=0;MQRankSum=0.965;QD=0.65;ReadPosRankSum=0.414;SB=-1.508e+00 GT:AD:DP:GQ:PL 0/1:22,2:25:34:34,0,137 0/1:12,1:13:16:16,0,87 0/0:17,0:20:12:0,12,124 0/1:8,1:9:24:24,0,39 +chr1 208255877 rs6540453 T C 2167.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.368;DB;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=0.4338;MLEAC=8;MLEAF=1.00;MQ=36.69;MQ0=0;MQRankSum=-1.091;QD=33.34;ReadPosRankSum=2.244;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,16:17:18:592,18,0 1/1:3,14:17:42:550,42,0 1/1:1,17:18:20:615,20,0 1/1:1,11:12:33:449,33,0 +chr1 208276396 . A C 40.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.117;DP=24;Dels=0.00;FS=2.831;HaplotypeScore=3.5707;MLEAC=3;MLEAF=0.375;MQ=21.63;MQ0=0;MQRankSum=2.011;QD=2.26;ReadPosRankSum=-2.752;SB=12.95 GT:AD:DP:GQ:PL 0/0:5,0:6:9:0,9,98 0/1:5,1:6:26:28,0,26 1/1:4,1:5:3:34,3,0 0/1:6,1:7:22:22,0,74 +chr1 209406173 rs2800918 A G 634.84 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.661;DB;DP=62;Dels=0.00;FS=2.390;HaplotypeScore=1.0747;MLEAC=5;MLEAF=0.625;MQ=19.97;MQ0=0;MQRankSum=-1.864;QD=10.24;ReadPosRankSum=2.055;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:2,16:18:18:126,0,18 0/1:2,14:16:20:124,0,20 0/1:4,11:15:14:162,0,14 1/1:0,13:13:24:268,24,0 +chr1 209785431 . G A 64.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.795;DP=97;Dels=0.01;FS=31.946;HaplotypeScore=10.9768;MLEAC=2;MLEAF=0.250;MQ=28.63;MQ0=0;MQRankSum=-0.744;QD=1.32;ReadPosRankSum=-0.298;SB=14.11 GT:AD:DP:GQ:PL 0/1:18,4:22:73:73,0,263 0/1:24,3:27:33:33,0,404 0/0:25,1:27:11:0,11,522 0/0:17,1:20:30:0,30,310 +chr1 209880508 rs58182526 GA G 458.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.819;DB;DP=68;FS=0.000;HaplotypeScore=17.7632;MLEAC=3;MLEAF=0.375;MQ=28.06;MQ0=0;MQRankSum=2.178;QD=8.34;RPA=11,10;RU=A;ReadPosRankSum=-0.026;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:11,4:15:81:111,0,81 0/0:12,1:9:21:0,21,196 0/1:10,7:18:58:205,0,58 0/1:8,8:12:24:195,0,24 +chr1 210439372 . T C 104.38 . AC=6;AF=0.750;AN=8;BaseQRankSum=-3.778;DP=122;Dels=0.00;FS=60.980;HaplotypeScore=1.2150;MLEAC=6;MLEAF=0.750;MQ=12.04;MQ0=0;MQRankSum=2.404;QD=0.86;ReadPosRankSum=1.221;SB=1.97 GT:AD:DP:GQ:PL 0/1:29,2:31:23:23,0,80 1/1:31,3:34:6:75,6,0 0/1:41,1:42:11:11,0,117 1/1:14,1:15:3:38,3,0 +chr1 210560912 . T C 128.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.902;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=10.3910;MLEAC=4;MLEAF=0.500;MQ=35.77;MQ0=0;MQRankSum=-3.513;QD=1.30;ReadPosRankSum=3.470;SB=-1.200e-02 GT:AD:DP:GQ:PL 0/1:20,4:24:40:40,0,527 0/1:23,4:27:72:72,0,418 0/1:23,4:28:20:20,0,433 0/1:16,3:19:39:39,0,197 +chr1 210856585 rs3135473 G T 2352.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.368;DB;DP=296;Dels=0.00;FS=6.005;HaplotypeScore=2.3881;MLEAC=3;MLEAF=0.375;MQ=33.03;MQ0=0;MQRankSum=-6.383;QD=10.74;ReadPosRankSum=1.554;SB=-8.120e+02 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,223,2778 0/1:39,34:73:99:958,0,1065 0/1:53,33:86:99:857,0,1534 0/1:35,25:60:99:581,0,861 +chr1 211033278 rs4951670 T G 415.94 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.306;DB;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4299;MLEAC=6;MLEAF=0.750;MQ=19.54;MQ0=0;MQRankSum=1.365;QD=8.00;ReadPosRankSum=3.602;SB=-2.819e+01 GT:AD:DP:GQ:PL 0/1:2,7:9:12:114,0,12 1/1:5,10:15:15:175,15,0 0/1:5,8:13:30:71,0,30 1/1:7,8:15:9:101,9,0 +chr1 211033413 rs4951672 T C 314.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.661;DB;DP=77;Dels=0.00;FS=1.317;HaplotypeScore=0.9538;MLEAC=8;MLEAF=1.00;MQ=13.40;MQ0=0;MQRankSum=0.917;QD=4.09;ReadPosRankSum=1.876;SB=-7.163e+01 GT:AD:DP:GQ:PL 1/1:4,16:20:6:77,6,0 1/1:4,17:21:6:68,6,0 1/1:6,19:25:9:122,9,0 1/1:2,9:11:9:86,9,0 +chr1 211545648 . GT G 166.96 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.005;DP=145;FS=13.876;HaplotypeScore=58.8395;MLEAC=1;MLEAF=0.125;MQ=26.68;MQ0=0;MQRankSum=-0.293;QD=4.39;ReadPosRankSum=-1.385;SB=0.031 GT:AD:DP:GQ:PL 0/1:31,5:24:99:212,0,486 0/0:37,0:27:66:0,66,912 0/0:28,1:23:21:0,21,613 0/0:35,0:24:66:0,66,971 +chr1 212154588 . A G 113.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.556;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=4.9135;MLEAC=3;MLEAF=0.375;MQ=24.78;MQ0=0;MQRankSum=-1.902;QD=2.53;ReadPosRankSum=1.700;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:56:56,0,242 0/1:6,3:9:19:19,0,106 0/1:8,5:13:80:80,0,89 0/0:2,2:4:3:0,3,32 +chr1 212208745 . T A 119.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.149;DP=106;Dels=0.00;FS=47.640;HaplotypeScore=2.8827;MLEAC=3;MLEAF=0.375;MQ=36.69;MQ0=0;MQRankSum=-2.911;QD=1.56;ReadPosRankSum=-0.625;SB=0.893 GT:AD:DP:GQ:PL 0/0:28,1:29:34:0,34,793 0/1:25,2:27:25:25,0,466 0/1:25,4:29:30:30,0,671 0/1:15,6:21:99:108,0,301 +chr1 212560327 rs792449 A G 2043.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.044;DB;DP=135;Dels=0.01;FS=0.681;HaplotypeScore=4.0564;MLEAC=5;MLEAF=0.625;MQ=32.92;MQ0=0;MQRankSum=0.211;QD=15.14;ReadPosRankSum=1.347;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:4,22:26:63:785,63,0 0/1:27,15:42:99:456,0,488 0/1:22,14:36:99:399,0,631 0/1:15,14:30:99:449,0,269 +chr1 213146944 rs7511930 A G 415.37 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.736;DB;DP=23;Dels=0.04;FS=15.420;HaplotypeScore=1.7521;MLEAC=7;MLEAF=0.875;MQ=30.14;MQ0=0;MQRankSum=2.341;QD=18.06;ReadPosRankSum=-0.890;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:26:26,0,76 1/1:2,3:5:9:121,9,0 1/1:1,3:4:9:118,9,0 1/1:3,5:8:15:194,15,0 +chr1 213174095 . A C 282.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.746;DP=70;Dels=0.00;FS=13.433;HaplotypeScore=0.6634;MLEAC=4;MLEAF=0.500;MQ=32.95;MQ0=0;MQRankSum=-2.763;QD=4.04;ReadPosRankSum=0.974;SB=-1.204e-02 GT:AD:DP:GQ:PL 0/1:15,6:21:99:118,0,300 0/1:13,4:17:60:60,0,222 0/1:16,6:22:99:106,0,262 0/1:8,2:10:41:41,0,171 +chr1 213178340 rs11120076 G A 2264.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.674;DB;DP=65;Dels=0.02;FS=11.004;HaplotypeScore=0.8213;MLEAC=8;MLEAF=1.00;MQ=35.91;MQ0=0;MQRankSum=3.674;QD=34.83;ReadPosRankSum=2.377;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,21:24:63:845,63,0 1/1:1,17:18:51:669,51,0 1/1:2,16:18:48:632,48,0 1/1:0,4:4:12:157,12,0 +chr1 213840987 rs1509865 C G 214.77 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.556;DB;DP=16;Dels=0.00;FS=16.021;HaplotypeScore=0.1446;MLEAC=8;MLEAF=1.00;MQ=21.74;MQ0=0;MQRankSum=2.556;QD=13.42;ReadPosRankSum=-0.269;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:3:29,3,0 1/1:1,3:4:6:65,6,0 1/1:1,5:6:12:133,12,0 1/1:0,3:3:3:25,3,0 +chr1 214557129 . G T 32.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.228;DP=77;Dels=0.00;FS=20.224;HaplotypeScore=3.8784;MLEAC=1;MLEAF=0.125;MQ=33.32;MQ0=0;MQRankSum=-0.743;QD=2.06;ReadPosRankSum=-1.288;SB=1.72 GT:AD:DP:GQ:PL 0/0:25,0:25:66:0,66,778 0/0:15,0:15:39:0,39,477 0/0:21,0:21:36:0,36,433 0/1:13,3:16:69:69,0,282 +chr1 214566952 rs4655342 A G 584.68 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.239;DB;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.6500;MLEAC=8;MLEAF=1.00;MQ=30.83;MQ0=0;MQRankSum=1.569;QD=26.58;ReadPosRankSum=0.908;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,6:7:15:180,15,0 1/1:1,6:7:18:237,18,0 1/1:0,7:7:15:165,15,0 1/1:0,1:1:3:41,3,0 +chr1 214637882 rs7528315 A G 197.35 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.367;DB;DP=30;Dels=0.00;FS=3.245;HaplotypeScore=1.4136;MLEAC=5;MLEAF=0.625;MQ=29.62;MQ0=0;MQRankSum=1.184;QD=6.58;ReadPosRankSum=0.612;SB=20.85 GT:AD:DP:GQ:PL 1/1:4,2:6:6:62,6,0 0/1:5,3:8:61:61,0,96 1/1:5,1:7:3:34,3,0 0/1:5,3:9:65:83,0,65 +chr1 215256888 rs61818297 G A 34.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.913;DB;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.125;MQ=20.64;MQ0=0;MQRankSum=1.756;QD=17.07;ReadPosRankSum=-0.632;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:9:0,9,88 1/1:0,2:2:6:74,6,0 0/0:4,0:4:6:0,6,64 0/0:6,0:6:6:0,6,60 +chr1 215345263 rs3834061 GTCTCTC G 463.02 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.696;DB;DP=53;FS=0.000;HaplotypeScore=4.3182;MLEAC=5;MLEAF=0.833;MQ=15.17;MQ0=0;MQRankSum=1.393;QD=9.65;RPA=11,8;RU=TC;ReadPosRankSum=-1.741;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:6,8:5:12:202,12,0 0/1:10,6:6:72:128,0,72 1/1:7,10:8:9:183,9,0 ./. +chr1 215802207 . G C 79.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.427;DP=143;Dels=0.00;FS=53.061;HaplotypeScore=15.0114;MLEAC=2;MLEAF=0.250;MQ=26.89;MQ0=0;MQRankSum=-1.643;QD=1.14;ReadPosRankSum=2.105;SB=0.665 GT:AD:DP:GQ:PL 0/1:28,5:33:86:86,0,487 0/0:33,3:37:36:0,36,645 0/1:32,5:37:35:35,0,596 0/0:35,0:36:60:0,60,626 +chr1 216107915 rs41277206 G A 238.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.169;DB;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=30.38;MQ0=0;MQRankSum=-0.557;QD=10.82;ReadPosRankSum=1.632;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,0:26:60:0,60,746 0/1:11,11:22:99:274,0,340 0/0:27,0:27:66:0,66,750 0/0:8,0:8:12:0,12,154 +chr1 216260117 . G A 62.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.575;DP=123;Dels=0.04;FS=23.264;HaplotypeScore=15.8789;MLEAC=3;MLEAF=0.375;MQ=30.59;MQ0=0;MQRankSum=-1.620;QD=0.70;ReadPosRankSum=-1.541;SB=-2.615e+00 GT:AD:DP:GQ:PL 0/0:31,0:31:72:0,72,892 0/1:33,4:37:26:26,0,785 0/1:36,4:40:40:40,0,688 0/1:8,2:10:40:40,0,144 +chr1 217438561 rs7541546 C T 47.01 . AC=4;AF=1.00;AN=4;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=26.71;MQ0=0;QD=15.67;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:41,3,0 ./. 1/1:1,1:2:3:39,3,0 ./. +chr1 217664977 . A C 95.52 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.997;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=8.9355;MLEAC=3;MLEAF=0.375;MQ=32.10;MQ0=0;MQRankSum=-1.187;QD=0.97;ReadPosRankSum=2.856;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:43,2:45:9:0,9,842 0/1:40,6:46:84:84,0,851 0/1:33,2:35:17:17,0,506 0/1:14,2:16:37:37,0,219 +chr1 217783538 . C A 156.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.231;DP=164;Dels=0.03;FS=51.207;HaplotypeScore=13.8292;MLEAC=3;MLEAF=0.375;MQ=27.84;MQ0=0;MQRankSum=-3.525;QD=1.51;ReadPosRankSum=0.061;SB=1.07 GT:AD:DP:GQ:PL 0/0:53,4:59:20:0,20,819 0/1:37,6:44:61:61,0,482 0/1:31,5:36:28:28,0,406 0/1:14,5:20:79:111,0,79 +chr1 217915513 . C G 177.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.263;DP=185;Dels=0.01;FS=4.594;HaplotypeScore=15.7125;MLEAC=3;MLEAF=0.375;MQ=29.38;MQ0=0;MQRankSum=-1.484;QD=1.27;ReadPosRankSum=1.348;SB=-1.230e-02 GT:AD:DP:GQ:PL 0/1:47,6:53:99:133,0,380 0/0:45,0:45:42:0,42,458 0/1:48,4:52:47:47,0,489 0/1:31,3:34:41:41,0,400 +chr1 220142387 . T A 42.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.632;DP=103;Dels=0.00;FS=16.945;HaplotypeScore=0.2447;MLEAC=2;MLEAF=0.250;MQ=32.98;MQ0=0;MQRankSum=-1.069;QD=0.99;ReadPosRankSum=-1.011;SB=0.256 GT:AD:DP:GQ:PL 0/0:31,1:32:47:0,47,865 0/1:26,3:29:39:39,0,609 0/0:26,2:28:33:0,33,714 0/1:12,2:14:45:45,0,191 +chr1 220197545 rs2577159 C T 437.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.986;DB;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=0.4580;MLEAC=3;MLEAF=0.375;MQ=35.28;MQ0=0;MQRankSum=-3.232;QD=8.42;ReadPosRankSum=0.669;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:57:0,57,742 0/1:17,8:25:99:221,0,576 0/1:8,7:15:99:177,0,235 0/1:7,3:11:83:83,0,164 +chr1 220406093 . A T 307.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.101;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.7658;MLEAC=4;MLEAF=0.500;MQ=29.82;MQ0=0;MQRankSum=-2.588;QD=4.21;ReadPosRankSum=3.646;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,10:22:99:167,0,138 0/1:21,7:28:85:85,0,475 0/1:12,3:15:72:72,0,237 0/1:7,1:8:26:26,0,130 +chr1 220831192 . T G 470.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.602;DP=47;Dels=0.00;FS=13.206;HaplotypeScore=0.4737;MLEAC=4;MLEAF=0.500;MQ=33.37;MQ0=0;MQRankSum=0.177;QD=10.01;ReadPosRankSum=2.339;SB=0.201 GT:AD:DP:GQ:PL 0/1:6,4:10:33:102,0,33 0/1:8,8:16:84:192,0,84 0/1:8,5:13:79:147,0,79 0/1:4,4:8:19:72,0,19 +chr1 222697088 rs3748662 G A 1024.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.897;DB;DP=103;Dels=0.00;FS=2.605;HaplotypeScore=0.6042;MLEAC=3;MLEAF=0.375;MQ=40.72;MQ0=0;MQRankSum=-3.991;QD=13.66;ReadPosRankSum=1.470;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,12:22:99:420,0,265 0/0:28,0:28:78:0,78,1102 0/1:18,11:29:99:348,0,562 0/1:15,9:24:99:300,0,453 +chr1 222734861 . C T 530.99 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.542;DP=65;Dels=0.02;FS=28.318;HaplotypeScore=1.0088;MLEAC=4;MLEAF=0.500;MQ=25.42;MQ0=0;MQRankSum=-2.064;QD=8.17;ReadPosRankSum=2.691;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,9:20:99:214,0,219 0/1:11,9:20:99:154,0,139 0/1:11,6:17:87:87,0,111 0/1:2,5:7:7:118,0,7 +chr1 222919748 rs2378606 G A 952.26 . AC=6;AF=1.00;AN=6;BaseQRankSum=3.142;DB;DP=37;Dels=0.00;FS=30.065;HaplotypeScore=1.4107;MLEAC=6;MLEAF=1.00;MQ=31.33;MQ0=0;MQRankSum=3.142;QD=28.01;ReadPosRankSum=1.739;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,12:16:36:466,36,0 1/1:0,7:7:21:253,21,0 1/1:4,7:11:21:271,21,0 ./. +chr1 223178471 . A C 73.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.643;DP=196;Dels=0.01;FS=31.564;HaplotypeScore=11.1784;MLEAC=2;MLEAF=0.250;MQ=36.79;MQ0=0;MQRankSum=-3.755;QD=0.70;ReadPosRankSum=2.568;SB=-1.131e+00 GT:AD:DP:GQ:PL 0/0:35,3:38:8:0,8,898 0/1:38,3:41:20:20,0,762 0/1:56,7:63:94:94,0,1504 0/0:49,4:53:24:0,24,1250 +chr1 223178797 . G C 116.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.308;DP=182;Dels=0.01;FS=91.891;HaplotypeScore=6.4902;MLEAC=2;MLEAF=0.250;MQ=35.31;MQ0=0;MQRankSum=-1.152;QD=1.10;ReadPosRankSum=1.043;SB=-5.987e-01 GT:AD:DP:GQ:PL 0/1:48,6:54:66:66,0,1363 0/0:36,2:38:57:0,57,953 0/1:44,8:52:92:92,0,1178 0/0:36,0:36:84:0,84,951 +chr1 223814682 rs67990281 A T 159.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.872;DB;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=2.0597;MLEAC=3;MLEAF=0.375;MQ=34.53;MQ0=0;MQRankSum=-0.540;QD=3.72;ReadPosRankSum=-0.057;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:54:0,54,669 0/1:14,3:18:71:71,0,435 0/1:10,2:12:46:46,0,375 0/1:9,3:12:86:86,0,123 +chr1 224318151 rs10651854 T TTTG 2864 . AC=8;AF=1.00;AN=8;BaseQRankSum=-1.476;DB;DP=71;FS=0.000;HaplotypeScore=5.5305;MLEAC=8;MLEAF=1.00;MQ=26.77;MQ0=0;MQRankSum=-1.155;QD=40.34;RPA=1,2;RU=TTG;ReadPosRankSum=1.347;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:3,16:16:18:755,18,0 1/1:4,18:17:45:840,45,0 1/1:3,20:20:57:1037,57,0 1/1:1,6:5:15:280,15,0 +chr1 225688896 . C T 38.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.011;DP=65;Dels=0.03;FS=0.000;HaplotypeScore=1.8682;MLEAC=3;MLEAF=0.375;MQ=26.20;MQ0=0;MQRankSum=-2.379;QD=0.87;ReadPosRankSum=-0.049;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,4:19:40:40,0,205 0/1:12,3:15:29:29,0,184 0/0:18,3:21:30:0,30,327 0/1:7,1:8:12:12,0,94 +chr1 226016508 . T G 41 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.844;DP=73;Dels=0.00;FS=2.519;HaplotypeScore=6.0560;MLEAC=1;MLEAF=0.125;MQ=30.38;MQ0=0;MQRankSum=-1.479;QD=2.05;ReadPosRankSum=2.246;SB=0.030 GT:AD:DP:GQ:PL 0/0:15,0:15:24:0,24,309 0/0:18,0:19:27:0,27,298 0/1:16,4:20:77:77,0,187 0/0:19,0:19:33:0,33,429 +chr1 226036309 rs360063 A G 146.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.913;DB;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.6169;MLEAC=1;MLEAF=0.125;MQ=35.84;MQ0=0;MQRankSum=-0.595;QD=7.74;ReadPosRankSum=0.561;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:60:0,60,786 0/1:13,6:19:99:183,0,364 0/0:25,0:25:63:0,63,800 0/0:27,0:27:60:0,60,776 +chr1 226048669 . A T 31.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.610;DP=197;Dels=0.03;FS=119.789;HaplotypeScore=20.4837;MLEAC=2;MLEAF=0.250;MQ=29.28;MQ0=0;MQRankSum=-4.078;QD=0.31;ReadPosRankSum=0.791;SB=-5.333e-01 GT:AD:DP:GQ:PL 0/1:35,9:44:55:55,0,1019 0/1:49,5:54:18:18,0,935 0/0:53,3:56:93:0,93,1298 0/0:33,5:38:21:0,21,849 +chr1 226475334 . T G 76.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.212;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=18.5181;MLEAC=2;MLEAF=0.250;MQ=28.20;MQ0=0;MQRankSum=-2.106;QD=1.30;ReadPosRankSum=2.112;SB=0.011 GT:AD:DP:GQ:PL 0/1:35,7:42:87:87,0,807 0/0:46,4:51:26:0,26,1061 0/0:41,3:44:21:0,21,934 0/1:10,5:16:31:31,0,163 +chr1 226556094 rs1805400 T C 1648.14 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.395;DB;DP=72;Dels=0.00;FS=13.153;HaplotypeScore=1.4773;MLEAC=8;MLEAF=1.00;MQ=27.96;MQ0=0;MQRankSum=2.592;QD=22.89;ReadPosRankSum=-0.098;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:48:538,48,0 1/1:2,20:22:54:575,54,0 1/1:5,12:17:9:326,9,0 1/1:6,9:15:24:248,24,0 +chr1 226558284 . A G 43.72 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.902;DP=84;Dels=0.01;FS=2.328;HaplotypeScore=2.7786;MLEAC=1;MLEAF=0.125;MQ=35.92;MQ0=0;MQRankSum=-3.266;QD=2.08;ReadPosRankSum=1.341;SB=0.514 GT:AD:DP:GQ:PL 0/0:19,1:20:10:0,10,537 0/0:15,1:16:3:0,3,384 0/0:24,2:26:51:0,51,620 0/1:15,6:21:79:79,0,356 +chr1 226825393 . A C 34.85 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.603;DP=79;Dels=0.00;FS=11.216;HaplotypeScore=1.5760;MLEAC=1;MLEAF=0.125;MQ=36.03;MQ0=0;MQRankSum=-0.982;QD=1.58;ReadPosRankSum=1.112;SB=-4.461e+00 GT:AD:DP:GQ:PL 0/0:14,1:15:7:0,7,335 0/0:20,0:20:42:0,42,536 0/0:21,1:22:3:0,3,358 0/1:19,3:22:70:70,0,391 +chr1 227069677 rs11405 T C 792.71 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.493;DB;DP=93;Dels=0.02;FS=0.000;HaplotypeScore=8.8240;MLEAC=5;MLEAF=0.625;MQ=29.28;MQ0=0;MQRankSum=-0.538;QD=8.52;ReadPosRankSum=-0.456;SB=-3.646e+02 GT:AD:DP:GQ:PL 1/1:6,7:13:18:180,18,0 0/1:15,10:25:99:262,0,292 0/1:19,13:32:99:331,0,516 0/1:15,6:21:65:65,0,387 +chr1 227239746 rs10799381 G T 1902.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.079;DB;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=2.7304;MLEAC=4;MLEAF=0.500;MQ=36.00;MQ0=0;MQRankSum=-4.676;QD=18.47;ReadPosRankSum=2.684;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,156,1992 1/1:1,33:34:93:1177,93,0 0/1:26,15:41:99:404,0,865 0/1:14,13:27:99:370,0,485 +chr1 227680868 rs28734771 T C 133.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.936;DB;DP=22;Dels=0.00;FS=2.246;HaplotypeScore=0.7457;MLEAC=4;MLEAF=0.500;MQ=21.31;MQ0=0;MQRankSum=1.027;QD=8.88;ReadPosRankSum=-0.421;SB=-2.222e+01 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,31 0/0:3,1:4:3:0,3,29 1/1:3,4:7:12:124,12,0 0/1:5,2:8:43:53,0,43 +chr1 227838754 . G A 211.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.958;DP=151;Dels=0.01;FS=9.456;HaplotypeScore=13.2835;MLEAC=4;MLEAF=0.500;MQ=18.27;MQ0=0;MQRankSum=2.951;QD=1.40;ReadPosRankSum=-0.801;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,4:32:17:17,0,49 0/1:39,9:48:89:89,0,154 0/1:47,5:52:49:49,0,256 0/1:12,6:18:19:99,0,19 +chr1 227922267 . C A 98.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.731;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.8217;MLEAC=3;MLEAF=0.375;MQ=26.95;MQ0=0;MQRankSum=-1.262;QD=2.41;ReadPosRankSum=3.122;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:13:61:69,0,61 0/1:10,3:13:41:41,0,45 0/1:10,5:15:31:31,0,119 0/0:6,0:6:6:0,6,61 +chr1 228289220 . C T 138.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.319;DP=123;Dels=0.00;FS=94.991;HaplotypeScore=6.1965;MLEAC=3;MLEAF=0.375;MQ=34.52;MQ0=0;MQRankSum=-4.170;QD=1.53;ReadPosRankSum=-1.655;SB=-1.271e+00 GT:AD:DP:GQ:PL 0/1:18,5:23:99:111,0,390 0/0:28,3:32:3:0,3,607 0/1:33,4:37:30:30,0,763 0/1:27,4:31:39:39,0,643 +chr1 228295564 . C A 78.64 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.422;DP=42;Dels=0.05;FS=0.000;HaplotypeScore=5.0753;MLEAC=3;MLEAF=0.375;MQ=28.31;MQ0=0;MQRankSum=0.640;QD=2.38;ReadPosRankSum=0.071;SB=-1.287e-01 GT:AD:DP:GQ:PL 0/1:10,1:11:14:14,0,117 0/1:5,2:7:50:50,0,69 0/0:9,0:9:9:0,9,91 0/1:11,2:13:57:57,0,88 +chr1 228333223 . C G 59.28 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.932;DP=49;Dels=0.00;FS=2.448;HaplotypeScore=6.2183;MLEAC=2;MLEAF=0.250;MQ=24.60;MQ0=0;MQRankSum=0.583;QD=2.96;ReadPosRankSum=-1.282;SB=-5.466e-03 GT:AD:DP:GQ:PL 0/1:9,3:12:76:76,0,77 0/0:12,0:12:27:0,27,296 0/0:16,1:17:6:0,6,270 0/1:7,1:8:24:24,0,43 +chr1 228335317 . A C 87.08 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.972;DP=75;Dels=0.04;FS=30.495;HaplotypeScore=12.4529;MLEAC=4;MLEAF=0.500;MQ=24.25;MQ0=0;MQRankSum=-0.645;QD=1.16;ReadPosRankSum=-0.318;SB=-4.951e-01 GT:AD:DP:GQ:PL 0/1:11,6:17:63:63,0,138 0/1:16,1:18:10:10,0,252 0/1:23,3:26:42:42,0,253 0/1:7,4:11:14:14,0,98 +chr1 228444741 rs3795780 C T 243.15 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.423;DB;DP=18;Dels=0.00;FS=10.414;HaplotypeScore=0.5191;MLEAC=6;MLEAF=1.00;MQ=26.12;MQ0=0;MQRankSum=1.107;QD=15.20;ReadPosRankSum=-0.474;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,3:5:9:109,9,0 1/1:1,2:3:6:76,6,0 1/1:3,5:8:9:95,9,0 ./. +chr1 228447331 . A C 75.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.797;DP=190;Dels=0.00;FS=103.219;HaplotypeScore=2.5555;MLEAC=3;MLEAF=0.375;MQ=13.57;MQ0=0;MQRankSum=-0.073;QD=0.53;ReadPosRankSum=2.482;SB=-1.419e+00 GT:AD:DP:GQ:PL 0/1:39,5:44:6:6,0,223 0/1:49,3:52:35:35,0,80 0/0:43,3:47:18:0,18,186 0/1:40,7:47:76:76,0,101 +chr1 228456394 . G T 84.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.688;DP=122;Dels=0.00;FS=46.651;HaplotypeScore=1.1734;MLEAC=3;MLEAF=0.375;MQ=20.48;MQ0=0;MQRankSum=2.932;QD=0.91;ReadPosRankSum=2.175;SB=0.448 GT:AD:DP:GQ:PL 0/1:31,1:32:19:19,0,86 0/1:29,2:31:29:29,0,227 0/0:29,0:29:18:0,18,176 0/1:26,4:30:80:80,0,302 +chr1 228461408 rs11398292 A AG 969.22 . AC=6;AF=0.750;AN=8;BaseQRankSum=-2.372;DB;DP=45;FS=0.000;HaplotypeScore=19.0506;MLEAC=8;MLEAF=1.00;MQ=23.82;MQ0=0;MQRankSum=0.501;QD=21.54;RPA=3,4;RU=G;ReadPosRankSum=0.902;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:5,9:12:2:353,0,2 0/1:5,3:2:2:34,0,2 1/1:6,7:12:30:380,30,0 1/1:3,6:8:7:250,7,0 +chr1 228462080 . A C 30.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.604;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.5603;MLEAC=1;MLEAF=0.125;MQ=29.31;MQ0=0;MQRankSum=0.664;QD=1.88;ReadPosRankSum=-0.824;SB=-7.828e+00 GT:AD:DP:GQ:PL 0/1:13,3:16:66:66,0,314 0/0:21,1:22:22:0,22,481 0/0:19,1:20:18:0,18,488 0/0:29,2:31:22:0,22,572 +chr1 228486404 rs56021350 C T 530.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=3.154;DB;DP=126;Dels=0.00;FS=6.348;HaplotypeScore=3.8010;MLEAC=2;MLEAF=0.250;MQ=26.54;MQ0=0;MQRankSum=1.296;QD=8.70;ReadPosRankSum=1.354;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:15,9:24:99:176,0,273 0/1:20,17:37:99:396,0,220 0/0:36,0:36:81:0,81,882 0/0:29,0:29:48:0,48,513 +chr1 228509786 . C T 243.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.061;DP=146;Dels=0.00;FS=77.327;HaplotypeScore=5.4582;MLEAC=3;MLEAF=0.375;MQ=33.36;MQ0=0;MQRankSum=-0.425;QD=2.32;ReadPosRankSum=2.511;SB=-1.096e+00 GT:AD:DP:GQ:PL 0/1:30,6:36:99:126,0,607 0/0:38,3:41:3:0,3,798 0/1:36,5:41:71:71,0,832 0/1:23,5:28:88:88,0,327 +chr1 228550497 . A T 38.97 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.450;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=-0.250;QD=1.50;ReadPosRankSum=2.250;SB=-1.183e-02 GT:AD:DP:GQ:PL ./. 0/1:7,1:8:19:19,0,119 0/1:7,2:9:50:50,0,157 0/1:8,1:9:8:8,0,149 +chr1 228553803 . G C 118.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.349;DP=131;Dels=0.01;FS=34.465;HaplotypeScore=1.4826;MLEAC=3;MLEAF=0.375;MQ=35.77;MQ0=0;MQRankSum=-2.740;QD=1.28;ReadPosRankSum=-1.127;SB=1.11 GT:AD:DP:GQ:PL 0/1:25,5:30:84:84,0,708 0/0:35,2:37:26:0,26,1036 0/1:33,4:37:35:35,0,880 0/1:22,4:26:43:43,0,479 +chr1 228596126 . A G 109.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.949;DP=106;Dels=0.00;FS=45.654;HaplotypeScore=2.6570;MLEAC=3;MLEAF=0.375;MQ=33.16;MQ0=0;MQRankSum=-1.806;QD=2.32;ReadPosRankSum=0.347;SB=-3.657e+00 GT:AD:DP:GQ:PL 0/1:23,3:26:36:36,0,530 0/0:27,2:29:0:0,0,661 0/0:28,2:30:9:0,9,747 0/1:15,5:21:99:112,0,268 +chr1 228699477 rs6665115 T C 1917.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.651;DB;DP=138;Dels=0.00;FS=2.485;HaplotypeScore=2.6119;MLEAC=4;MLEAF=0.500;MQ=32.69;MQ0=0;MQRankSum=-0.709;QD=13.90;ReadPosRankSum=2.496;SB=-5.150e+02 GT:AD:DP:GQ:PL 0/1:20,15:35:99:352,0,527 0/1:8,22:30:17:744,0,17 0/1:22,19:41:99:599,0,600 0/1:21,11:32:99:265,0,586 +chr1 229633944 . G A 40.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.824;DP=134;Dels=0.00;FS=42.373;HaplotypeScore=2.6511;MLEAC=2;MLEAF=0.250;MQ=36.18;MQ0=0;MQRankSum=-4.690;QD=0.47;ReadPosRankSum=0.004;SB=-2.310e+00 GT:AD:DP:GQ:PL 0/0:31,1:33:47:0,47,849 0/1:35,5:40:26:26,0,1000 0/1:40,6:46:55:55,0,1094 0/0:13,2:15:5:0,5,395 +chr1 229636467 . A G 188.13 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.589;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=10.8177;MLEAC=7;MLEAF=0.875;MQ=20.30;MQ0=0;MQRankSum=2.561;QD=5.88;ReadPosRankSum=-0.530;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,3:8:9:98,9,0 1/1:9,1:10:3:25,3,0 1/1:9,4:13:12:109,12,0 0/0:3,1:4:3:0,3,24 +chr1 229665889 . A T 1446.78 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.437;DP=106;Dels=0.01;FS=20.975;HaplotypeScore=4.4260;MLEAC=5;MLEAF=0.625;MQ=29.36;MQ0=0;MQRankSum=3.405;QD=13.65;ReadPosRankSum=2.902;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,13:21:1:384,0,1 0/1:15,11:26:99:313,0,134 0/1:18,16:34:76:420,0,76 1/1:12,12:24:33:373,33,0 +chr1 229841163 . T A 195.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.265;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7963;MLEAC=4;MLEAF=0.500;MQ=15.48;MQ0=0;MQRankSum=3.709;QD=1.47;ReadPosRankSum=0.453;SB=0.023 GT:AD:DP:GQ:PL 0/1:34,8:42:50:99,0,50 0/1:27,3:30:18:30,0,18 0/1:33,5:38:18:57,0,18 0/1:18,4:23:42:52,0,42 +chr1 230372045 . A G 160.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.277;DP=62;Dels=0.03;FS=6.232;HaplotypeScore=12.9255;MLEAC=5;MLEAF=0.625;MQ=20.23;MQ0=0;MQRankSum=2.530;QD=2.77;ReadPosRankSum=0.070;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:35:47,0,35 1/1:14,5:19:9:88,9,0 0/1:18,3:21:20:70,0,20 0/0:4,0:4:3:0,3,28 +chr1 230401213 rs12724657 A G 980.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.963;DB;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=3.3993;MLEAC=3;MLEAF=0.375;MQ=35.94;MQ0=0;MQRankSum=-6.162;QD=5.80;ReadPosRankSum=3.535;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:42,19:61:99:558,0,1084 0/0:60,1:61:99:0,130,2085 0/1:54,11:65:99:193,0,1426 0/1:32,11:43:99:273,0,664 +chr1 230497111 rs1108706 G A 42.25 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.720;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=2.3260;MLEAC=3;MLEAF=0.750;MQ=30.44;MQ0=0;MQRankSum=1.380;QD=5.28;ReadPosRankSum=-0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 0/1:3,1:4:35:38,0,35 1/1:3,1:4:3:39,3,0 +chr1 230991374 . T G 39.59 . AC=1;AF=0.167;AN=6;BaseQRankSum=-1.299;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.4063;MLEAC=1;MLEAF=0.167;MQ=22.77;MQ0=0;MQRankSum=-0.154;QD=1.58;ReadPosRankSum=1.343;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,5:25:73:73,0,153 0/0:19,1:20:12:0,12,104 0/0:19,1:20:1:0,1,169 ./. +chr1 231057310 rs2275334 C T 1225.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.613;DB;DP=66;Dels=0.00;FS=5.952;HaplotypeScore=0.7326;MLEAC=5;MLEAF=0.625;MQ=28.69;MQ0=0;MQRankSum=-1.318;QD=18.57;ReadPosRankSum=0.592;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,13:21:99:371,0,153 1/1:0,15:15:33:375,33,0 0/1:6,13:19:99:365,0,139 0/1:5,6:11:77:160,0,77 +chr1 231156029 rs10864654 A G 42.01 . AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=27.81;MQ0=0;QD=21.00;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:39,3,0 ./. 1/1:0,1:1:3:36,3,0 ./. +chr1 231335945 . G A 581.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.650;DP=201;Dels=0.02;FS=156.355;HaplotypeScore=22.3252;MLEAC=4;MLEAF=0.500;MQ=30.76;MQ0=0;MQRankSum=-0.442;QD=2.89;ReadPosRankSum=2.831;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:39,7:46:99:142,0,811 0/1:36,7:43:99:106,0,517 0/1:42,12:54:99:208,0,936 0/1:45,9:54:99:168,0,689 +chr1 231376708 . C A 814.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.566;DP=128;Dels=0.00;FS=161.970;HaplotypeScore=3.3740;MLEAC=4;MLEAF=0.500;MQ=31.76;MQ0=0;MQRankSum=-5.059;QD=6.36;ReadPosRankSum=3.178;SB=1.75 GT:AD:DP:GQ:PL 0/1:15,15:30:99:316,0,415 0/1:21,13:34:99:228,0,488 0/1:24,11:35:99:196,0,512 0/1:21,8:29:99:117,0,372 +chr1 231487418 rs61826790 C T 276 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.489;DB;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=1.1498;MLEAC=1;MLEAF=0.125;MQ=34.92;MQ0=0;MQRankSum=0.810;QD=14.53;ReadPosRankSum=1.427;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:29,0:29:84:0,84,1059 0/1:10,9:19:99:312,0,221 0/0:22,0:22:63:0,63,778 0/0:9,0:9:21:0,21,268 +chr1 232575315 . A T 31.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.726;DP=103;Dels=0.03;FS=0.000;HaplotypeScore=4.5804;MLEAC=1;MLEAF=0.125;MQ=36.25;MQ0=0;MQRankSum=-2.544;QD=1.23;ReadPosRankSum=-0.064;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:60:0,60,810 0/0:27,0:27:60:0,60,782 0/0:23,1:25:42:0,42,771 0/1:20,4:24:68:68,0,377 +chr1 232601023 . C T 55.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.468;DP=243;Dels=0.01;FS=33.326;HaplotypeScore=3.2171;MLEAC=1;MLEAF=0.125;MQ=36.56;MQ0=0;MQRankSum=0.142;QD=1.00;ReadPosRankSum=0.100;SB=0.039 GT:AD:DP:GQ:PL 0/0:58,2:60:99:0,105,1864 0/0:52,1:53:99:0,101,1616 0/0:70,2:72:99:0,104,2107 0/1:49,7:56:92:92,0,1049 +chr1 233121791 rs12038915 G A 929.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.627;DB;DP=101;Dels=0.04;FS=6.912;HaplotypeScore=12.8648;MLEAC=4;MLEAF=0.500;MQ=28.17;MQ0=0;MQRankSum=0.966;QD=9.20;ReadPosRankSum=1.468;SB=-2.160e+02 GT:AD:DP:GQ:PL 0/1:13,6:20:99:167,0,280 0/1:17,7:25:99:196,0,260 0/1:20,10:30:99:271,0,321 0/1:11,11:22:99:338,0,186 +chr1 233122272 . T C 62.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.126;DP=82;Dels=0.01;FS=8.404;HaplotypeScore=1.8921;MLEAC=1;MLEAF=0.125;MQ=34.94;MQ0=0;MQRankSum=-0.999;QD=3.50;ReadPosRankSum=-1.860;SB=0.038 GT:AD:DP:GQ:PL 0/0:16,0:16:39:0,39,467 0/0:20,0:21:45:0,45,543 0/0:26,0:26:57:0,57,677 0/1:14,4:18:99:99,0,278 +chr1 233314964 . G A 446.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.132;DP=206;Dels=0.00;FS=13.817;HaplotypeScore=10.4251;MLEAC=3;MLEAF=0.375;MQ=36.34;MQ0=0;MQRankSum=-4.350;QD=2.92;ReadPosRankSum=1.879;SB=0.864 GT:AD:DP:GQ:PL 0/1:33,7:40:99:155,0,559 0/1:40,7:47:99:119,0,621 0/0:51,2:53:7:0,7,716 0/1:54,11:65:99:215,0,710 +chr1 233489529 rs7549137 G A 925.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.330;DB;DP=99;Dels=0.02;FS=0.000;HaplotypeScore=0.9746;MLEAC=4;MLEAF=0.500;MQ=41.59;MQ0=0;MQRankSum=-4.800;QD=9.35;ReadPosRankSum=1.435;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:12,5:17:99:138,0,410 0/1:10,9:19:99:317,0,319 0/1:24,9:33:99:233,0,875 0/1:19,9:28:99:280,0,638 +chr1 233767008 rs701224 T A 249.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.534;DB;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9940;MLEAC=1;MLEAF=0.125;MQ=34.51;MQ0=0;MQRankSum=-0.696;QD=8.93;ReadPosRankSum=0.440;SB=-1.030e+02 GT:AD:DP:GQ:PL 0/1:18,10:28:99:286,0,410 0/0:32,0:32:84:0,84,951 0/0:30,0:30:87:0,87,1054 0/0:16,0:16:42:0,42,522 +chr1 234367549 rs2236220 T C 97.35 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.824;DB;DP=40;Dels=0.05;FS=18.623;HaplotypeScore=11.4888;MLEAC=6;MLEAF=1.00;MQ=12.15;MQ0=0;MQRankSum=2.802;QD=2.70;ReadPosRankSum=-1.418;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,3:8:3:28,3,0 1/1:9,5:14:9:82,9,0 1/1:9,4:13:3:23,3,0 ./. +chr1 234367565 . G C 31.15 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.115;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=19.9382;MLEAC=2;MLEAF=0.333;MQ=13.93;MQ0=0;MQRankSum=2.071;QD=1.04;ReadPosRankSum=-1.646;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,2:14:17:47,0,17 0/1:14,1:16:20:21,0,20 ./. 0/0:7,1:8:3:0,3,22 +chr1 234563556 rs10910434 T A 133.06 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.670;DB;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.3285;MLEAC=3;MLEAF=0.375;MQ=27.64;MQ0=0;MQRankSum=0.507;QD=5.12;ReadPosRankSum=-1.401;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:24:0,24,255 0/1:9,1:10:14:14,0,198 0/1:7,6:13:80:124,0,80 1/1:2,1:3:3:39,3,0 +chr1 235291821 . C G 39.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.853;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=0.250;MQ=28.32;MQ0=0;MQRankSum=-0.885;QD=1.17;ReadPosRankSum=-0.584;SB=-3.352e-04 GT:AD:DP:GQ:PL 0/0:13,0:13:24:0,24,291 0/1:11,2:13:33:33,0,167 0/0:13,0:13:15:0,15,170 0/1:17,4:21:48:48,0,246 +chr1 235384945 . G T 41.24 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.736;DP=71;Dels=0.00;FS=19.101;HaplotypeScore=13.8218;MLEAC=2;MLEAF=0.250;MQ=22.84;MQ0=0;MQRankSum=0.298;QD=0.98;ReadPosRankSum=0.329;SB=2.09 GT:AD:DP:GQ:PL 0/1:16,3:21:47:47,0,163 0/1:18,3:21:35:35,0,66 0/0:17,1:18:24:0,24,222 0/0:11,0:11:6:0,6,44 +chr1 235896808 . A C 294.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.529;DP=110;Dels=0.00;FS=14.941;HaplotypeScore=9.6339;MLEAC=4;MLEAF=0.500;MQ=34.78;MQ0=0;MQRankSum=-2.270;QD=2.68;ReadPosRankSum=-0.553;SB=-1.289e-02 GT:AD:DP:GQ:PL 0/1:27,3:30:35:35,0,594 0/1:24,6:30:99:138,0,468 0/1:31,6:37:99:109,0,611 0/1:11,2:13:55:55,0,85 +chr1 236154012 rs1041111 C T 61.28 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.382;DB;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.1259;MLEAC=3;MLEAF=0.375;MQ=33.03;MQ0=0;MQRankSum=0.382;QD=6.81;ReadPosRankSum=0.382;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:34:69,0,34 0/0:2,0:2:3:0,3,44 0/0:2,0:2:3:0,3,41 0/1:3,1:4:31:31,0,71 +chr1 236192928 . C G 49.72 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.528;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7319;MLEAC=1;MLEAF=0.125;MQ=32.61;MQ0=0;MQRankSum=-0.993;QD=3.31;ReadPosRankSum=-1.862;SB=-1.033e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:30:0,30,371 0/0:16,1:17:2:0,2,397 0/0:12,0:12:27:0,27,343 0/1:11,4:15:85:85,0,262 +chr1 236700857 rs1041935 C T 1850.72 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.640;DB;DP=65;Dels=0.00;FS=8.088;HaplotypeScore=0.6579;MLEAC=7;MLEAF=0.875;MQ=36.36;MQ0=0;MQRankSum=-1.843;QD=28.47;ReadPosRankSum=0.369;SB=-4.148e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:42:546,42,0 0/1:9,13:22:99:455,0,269 1/1:2,20:22:33:736,33,0 1/1:3,4:7:12:158,12,0 +chr1 236703962 . A C 420.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.026;DP=170;Dels=0.01;FS=109.556;HaplotypeScore=23.6838;MLEAC=4;MLEAF=0.500;MQ=29.41;MQ0=0;MQRankSum=-2.100;QD=2.47;ReadPosRankSum=3.414;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:40,6:46:93:93,0,741 0/1:42,6:48:54:54,0,683 0/1:40,10:51:99:225,0,759 0/1:16,6:23:91:91,0,217 +chr1 236706425 rs2244267 G A 1536.72 . AC=7;AF=0.875;AN=8;BaseQRankSum=-1.789;DB;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=36.50;MQ0=0;MQRankSum=-4.039;QD=27.94;ReadPosRankSum=0.462;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,13:14:39:500,39,0 0/1:9,6:15:99:186,0,343 1/1:1,21:22:60:748,60,0 1/1:0,4:4:12:147,12,0 +chr1 236718686 . C T 753.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.269;DP=235;Dels=0.03;FS=87.343;HaplotypeScore=2.4361;MLEAC=3;MLEAF=0.375;MQ=36.55;MQ0=0;MQRankSum=-2.616;QD=4.71;ReadPosRankSum=3.706;SB=1.00 GT:AD:DP:GQ:PL 0/1:51,9:60:99:190,0,1331 0/0:71,3:74:72:0,72,2211 0/1:43,12:55:99:280,0,1113 0/1:27,13:40:99:327,0,537 +chr1 236740198 . C T 34.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.229;DP=191;Dels=0.00;FS=21.491;HaplotypeScore=3.0391;MLEAC=1;MLEAF=0.125;MQ=37.61;MQ0=0;MQRankSum=-2.124;QD=0.77;ReadPosRankSum=-0.087;SB=-2.238e+00 GT:AD:DP:GQ:PL 0/1:37,6:44:70:70,0,962 0/0:54,2:56:72:0,72,1451 0/0:56,1:57:99:0,102,1612 0/0:32,2:34:16:0,16,698 +chr1 236755814 rs2794757 G A 866.65 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.099;DB;DP=49;Dels=0.02;FS=12.153;HaplotypeScore=1.6715;MLEAC=7;MLEAF=0.875;MQ=27.88;MQ0=0;MQRankSum=-0.125;QD=17.69;ReadPosRankSum=1.044;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,7:11:21:223,21,0 0/1:8,7:15:99:137,0,197 1/1:2,13:15:36:410,36,0 1/1:2,5:7:15:141,15,0 +chr1 236902594 rs2288601 C G 5614.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.689;DB;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=1.8936;MLEAC=8;MLEAF=1.00;MQ=33.11;MQ0=0;MQRankSum=0.592;QD=34.02;ReadPosRankSum=1.711;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:2,42:44:95:1453,95,0 1/1:0,38:38:99:1330,111,0 1/1:0,40:40:99:1473,117,0 1/1:1,40:41:99:1358,114,0 +chr1 236908023 . G A 130.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.111;DP=70;Dels=0.01;FS=35.738;HaplotypeScore=6.9060;MLEAC=4;MLEAF=0.500;MQ=26.77;MQ0=0;MQRankSum=0.055;QD=1.87;ReadPosRankSum=2.104;SB=-1.023e-01 GT:AD:DP:GQ:PL 0/1:12,1:13:26:26,0,76 0/1:8,1:9:13:13,0,97 0/1:26,3:29:61:61,0,345 0/1:14,4:18:73:73,0,130 +chr1 236983534 rs61831810 C G 1330.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.642;DB;DP=180;Dels=0.02;FS=1.265;HaplotypeScore=7.9085;MLEAC=4;MLEAF=0.500;MQ=18.67;MQ0=0;MQRankSum=3.321;QD=7.39;ReadPosRankSum=2.379;SB=-5.828e+02 GT:AD:DP:GQ:PL 0/1:14,21:35:44:220,0,44 0/1:19,24:43:62:284,0,62 0/1:16,33:49:31:564,0,31 0/1:20,30:50:55:305,0,55 +chr1 237001926 rs3820568 A G 946.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.511;DB;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.4136;MLEAC=4;MLEAF=0.500;MQ=36.46;MQ0=0;MQRankSum=-4.045;QD=7.63;ReadPosRankSum=1.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,8:28:99:220,0,634 0/1:28,12:40:99:332,0,932 0/1:21,13:34:99:306,0,729 0/1:16,6:22:99:131,0,434 +chr1 237023333 rs10925254 T C 686.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.863;DB;DP=44;Dels=0.00;FS=4.623;HaplotypeScore=0.4891;MLEAC=5;MLEAF=0.625;MQ=35.67;MQ0=0;MQRankSum=0.984;QD=15.60;ReadPosRankSum=0.036;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:9,3:12:99:99,0,226 1/1:2,11:13:30:399,30,0 0/1:9,3:12:98:98,0,237 0/1:3,4:7:99:136,0,102 +chr1 237057737 . C G 40.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.280;DP=153;Dels=0.01;FS=31.651;HaplotypeScore=9.6507;MLEAC=1;MLEAF=0.125;MQ=32.45;MQ0=0;MQRankSum=-2.890;QD=1.03;ReadPosRankSum=0.000;SB=5.16 GT:AD:DP:GQ:PL 0/0:41,0:42:75:0,75,901 0/0:28,1:29:17:0,17,417 0/1:32,7:39:76:76,0,659 0/0:37,1:41:37:0,37,780 +chr1 237519194 . A C 30.51 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.776;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=5.9051;MLEAC=2;MLEAF=0.250;MQ=31.95;MQ0=0;MQRankSum=-3.371;QD=0.60;ReadPosRankSum=1.738;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:19:52:52,0,197 0/1:28,3:31:18:18,0,671 0/0:28,3:31:8:0,8,539 0/0:7,0:7:3:0,3,32 +chr1 237729774 rs2248295 G A 1224.99 . AC=8;AF=1.00;AN=8;DB;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=0.7306;MLEAC=8;MLEAF=1.00;MQ=32.64;MQ0=0;QD=29.17;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,9:10:24:291,24,0 1/1:1,9:10:24:289,24,0 1/1:1,10:11:30:373,30,0 1/1:0,10:10:27:311,27,0 +chr1 240334350 rs12725745 T C 90.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.380;DB;DP=198;Dels=0.00;FS=4.600;HaplotypeScore=12.8327;MLEAC=3;MLEAF=0.375;MQ=20.71;MQ0=0;MQRankSum=2.390;QD=0.74;ReadPosRankSum=-2.608;SB=-3.323e+01 GT:AD:DP:GQ:PL 0/1:31,2:33:30:30,0,278 0/0:75,0:75:66:0,66,733 0/1:45,6:51:96:96,0,299 0/1:37,2:39:7:7,0,524 +chr1 241946682 . A G 40.23 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.513;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=12.5567;MLEAC=1;MLEAF=0.125;MQ=25.02;MQ0=0;MQRankSum=1.746;QD=2.37;ReadPosRankSum=-2.105;SB=0.139 GT:AD:DP:GQ:PL 0/0:16,0:16:15:0,15,142 0/1:14,3:17:29:76,0,29 0/0:16,0:16:15:0,15,158 0/0:7,0:7:9:0,9,99 +chr1 241995676 . T G 186.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.373;DP=97;Dels=0.00;FS=4.674;HaplotypeScore=0.7407;MLEAC=4;MLEAF=0.500;MQ=18.57;MQ0=0;MQRankSum=3.169;QD=1.92;ReadPosRankSum=1.250;SB=-2.033e+01 GT:AD:DP:GQ:PL 0/1:21,1:22:9:9,0,196 0/1:21,4:25:67:67,0,227 0/1:26,5:31:66:92,0,66 0/1:14,5:19:60:60,0,151 +chr1 242030151 rs735943 A G 1883.47 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.629;DB;DP=81;Dels=0.01;FS=1.727;HaplotypeScore=0.9331;MLEAC=6;MLEAF=0.750;MQ=34.70;MQ0=0;MQRankSum=-4.155;QD=23.25;ReadPosRankSum=1.156;SB=-1.888e+02 GT:AD:DP:GQ:PL 0/1:18,7:25:99:138,0,608 1/1:1,22:23:35:743,35,0 1/1:0,21:21:60:739,60,0 0/1:2,9:11:5:308,0,5 +chr1 242374995 rs6690415 G T 317.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.282;DB;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=1.2621;MLEAC=4;MLEAF=0.500;MQ=31.47;MQ0=0;MQRankSum=1.364;QD=10.24;ReadPosRankSum=0.282;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:98:100,0,98 0/1:3,2:5:70:70,0,71 0/1:7,4:11:99:127,0,120 0/1:4,2:6:63:63,0,90 +chr1 243138354 rs12127896 A G 62.65 . AC=4;AF=1.00;AN=4;BaseQRankSum=2.267;DB;DP=29;Dels=0.00;FS=1.744;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=12.19;MQ0=0;MQRankSum=1.200;QD=3.69;ReadPosRankSum=1.067;SB=-1.664e+01 GT:AD:DP:GQ:PL 1/1:4,3:8:6:73,6,0 1/1:3,6:9:3:23,3,0 ./. ./. +chr1 243433535 . C G 39.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.032;DP=70;Dels=0.03;FS=4.898;HaplotypeScore=2.7198;MLEAC=2;MLEAF=0.250;MQ=33.66;MQ0=0;MQRankSum=-2.072;QD=1.16;ReadPosRankSum=1.487;SB=-8.262e-03 GT:AD:DP:GQ:PL 0/0:14,0:14:36:0,36,436 0/1:13,4:17:55:55,0,331 0/0:22,0:22:63:0,63,771 0/1:13,2:15:26:26,0,306 +chr1 243507680 rs3215963 C CA 131.25 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.422;DB;DP=47;FS=0.000;HaplotypeScore=28.6870;MLEAC=1;MLEAF=0.125;MQ=23.13;MQ0=0;MQRankSum=0.111;QD=8.75;RPA=1,2;RU=A;ReadPosRankSum=2.821;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:9,6:12:99:176,0,261 0/0:13,0:12:36:0,36,508 0/0:16,0:13:33:0,33,467 0/0:2,0:2:6:0,6,79 +chr1 243581269 . G A 172.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.570;DP=154;Dels=0.02;FS=9.096;HaplotypeScore=4.1135;MLEAC=4;MLEAF=0.500;MQ=32.92;MQ0=0;MQRankSum=-3.034;QD=1.12;ReadPosRankSum=-0.876;SB=-2.904e-01 GT:AD:DP:GQ:PL 0/1:38,7:45:99:140,0,710 0/1:38,4:43:35:35,0,890 0/1:45,3:48:11:11,0,783 0/1:13,2:15:29:29,0,219 +chr1 243828230 . A G 91.69 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.190;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=11.6865;MLEAC=5;MLEAF=0.625;MQ=19.30;MQ0=0;MQRankSum=-0.032;QD=1.76;ReadPosRankSum=4.246;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:13:17:17,0,48 0/1:14,8:22:52:73,0,52 0/1:9,5:14:19:19,0,31 1/1:2,1:3:3:25,3,0 +chr1 245318772 . A G 220.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.130;DP=109;Dels=0.01;FS=41.502;HaplotypeScore=3.9370;MLEAC=4;MLEAF=0.500;MQ=36.07;MQ0=0;MQRankSum=1.810;QD=2.02;ReadPosRankSum=-0.374;SB=-1.846e+00 GT:AD:DP:GQ:PL 0/1:16,5:21:99:114,0,388 0/1:32,2:34:2:2,0,599 0/1:23,5:28:99:107,0,547 0/1:22,3:25:38:38,0,486 +chr1 246714636 rs34850511 T A 103.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.215;DB;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=0.4052;MLEAC=3;MLEAF=0.375;MQ=30.57;MQ0=0;MQRankSum=-2.721;QD=1.36;ReadPosRankSum=1.289;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,7:32:95:95,0,592 0/0:34,0:34:99:0,102,1238 0/1:25,5:30:10:10,0,774 0/1:11,2:13:41:41,0,214 +chr1 246981266 rs79341542 T C 232.48 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.550;DB;DP=43;Dels=0.05;FS=8.435;HaplotypeScore=5.0219;MLEAC=7;MLEAF=0.875;MQ=17.78;MQ0=0;MQRankSum=1.177;QD=5.41;ReadPosRankSum=0.245;SB=-8.313e+01 GT:AD:DP:GQ:PL 1/1:3,7:10:3:24,3,0 1/1:5,3:8:6:59,6,0 0/1:4,7:11:14:100,0,14 1/1:6,6:12:9:91,9,0 +chr1 247202032 rs10924897 G T 834.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.653;DB;DP=61;Dels=0.00;FS=3.441;HaplotypeScore=0.9900;MLEAC=4;MLEAF=0.500;MQ=30.24;MQ0=0;MQRankSum=0.420;QD=13.68;ReadPosRankSum=-1.153;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,11:21:99:328,0,202 0/1:10,10:20:94:303,0,94 0/1:10,7:17:99:216,0,198 0/1:2,1:3:30:30,0,53 +chr1 247263973 rs35316550 T C 200.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.068;DB;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=2.4331;MLEAC=1;MLEAF=0.125;MQ=22.13;MQ0=0;MQRankSum=1.383;QD=3.05;ReadPosRankSum=0.539;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:49,16:65:99:237,0,617 0/0:64,0:64:99:0,111,1118 0/0:75,0:75:99:0,135,1395 0/0:25,0:25:45:0,45,445 +chr1 247323260 rs9793102 C A 46.12 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.713;DB;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.3277;MLEAC=2;MLEAF=0.333;MQ=31.79;MQ0=0;MQRankSum=-0.623;QD=6.59;ReadPosRankSum=0.934;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,221 1/1:1,1:2:3:34,3,0 0/1:3,2:5:52:52,0,74 ./. +chr1 247347693 . T G 31.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.582;DP=57;Dels=0.00;FS=17.109;HaplotypeScore=4.2224;MLEAC=3;MLEAF=0.375;MQ=17.89;MQ0=0;MQRankSum=-0.745;QD=0.82;ReadPosRankSum=1.286;SB=0.120 GT:AD:DP:GQ:PL 0/1:12,1:13:7:7,0,131 0/1:7,6:13:39:39,0,65 0/0:16,2:18:6:0,6,64 0/1:9,3:13:27:27,0,41 +chr1 247464067 . G A 38.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.675;DP=140;Dels=0.00;FS=34.915;HaplotypeScore=3.8421;MLEAC=2;MLEAF=0.250;MQ=26.64;MQ0=0;MQRankSum=-0.070;QD=0.57;ReadPosRankSum=0.405;SB=-4.161e+00 GT:AD:DP:GQ:PL 0/1:28,4:32:69:69,0,465 0/1:33,2:36:8:8,0,526 0/0:40,2:42:22:0,22,757 0/0:27,2:30:2:0,2,462 +chr1 247588878 . C A 54.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.619;DP=125;Dels=0.00;FS=36.051;HaplotypeScore=8.6857;MLEAC=2;MLEAF=0.250;MQ=33.45;MQ0=0;MQRankSum=-4.403;QD=0.81;ReadPosRankSum=0.249;SB=-3.309e-01 GT:AD:DP:GQ:PL 0/1:26,6:32:69:69,0,566 0/1:30,6:36:27:27,0,854 0/0:24,2:26:10:0,10,715 0/0:27,4:31:44:0,44,809 +chr1 247597620 . T C 32.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.897;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=4.1201;MLEAC=3;MLEAF=0.375;MQ=32.09;MQ0=0;MQRankSum=-2.405;QD=0.67;ReadPosRankSum=-1.031;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:18:18,0,317 0/1:14,3:17:51:51,0,350 0/0:20,0:21:36:0,36,401 0/1:13,2:15:5:5,0,141 +chr1 247614386 rs12070953 T C 237.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.425;DB;DP=341;Dels=0.00;FS=0.930;HaplotypeScore=7.7655;MLEAC=1;MLEAF=0.125;MQ=32.73;MQ0=0;MQRankSum=-3.068;QD=2.94;ReadPosRankSum=1.028;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:63,18:81:99:274,0,1546 0/0:94,1:95:99:0,207,2962 0/0:97,0:97:99:0,244,2876 0/0:67,0:67:99:0,165,1994 +chr1 247614932 . A C 283.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.440;DP=106;Dels=0.02;FS=40.031;HaplotypeScore=8.6770;MLEAC=3;MLEAF=0.375;MQ=25.23;MQ0=0;MQRankSum=-3.169;QD=3.84;ReadPosRankSum=3.305;SB=0.377 GT:AD:DP:GQ:PL 0/1:17,6:23:78:78,0,273 0/0:30,1:31:29:0,29,534 0/1:19,7:26:99:114,0,349 0/1:17,7:24:99:135,0,253 +chr1 247695130 . C T 62.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.559;DP=202;Dels=0.01;FS=49.731;HaplotypeScore=12.8035;MLEAC=3;MLEAF=0.375;MQ=32.46;MQ0=0;MQRankSum=-5.761;QD=0.43;ReadPosRankSum=-0.166;SB=-2.713e+00 GT:AD:DP:GQ:PL 0/1:45,6:52:35:35,0,1026 0/1:45,6:52:5:5,0,1141 0/0:50,6:56:3:0,3,1390 0/1:34,6:40:62:62,0,757 +chr1 247752019 rs1151687 G C 626.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.801;DB;DP=283;Dels=0.00;FS=3.792;HaplotypeScore=0.2499;MLEAC=1;MLEAF=0.125;MQ=36.61;MQ0=0;MQRankSum=-3.578;QD=9.95;ReadPosRankSum=0.387;SB=-2.590e+02 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,199,2555 0/1:36,27:63:99:663,0,1152 0/0:83,0:83:99:0,238,3085 0/0:67,0:67:99:0,202,2551 +chr1 247835908 rs28556931 T A 2877.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.602;DB;DP=223;Dels=0.00;FS=0.535;HaplotypeScore=2.4780;MLEAC=4;MLEAF=0.500;MQ=38.81;MQ0=0;MQRankSum=-6.338;QD=17.55;ReadPosRankSum=2.631;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:4,49:53:93:1897,93,0 0/0:59,0:59:99:0,178,2384 0/1:37,18:55:99:549,0,1212 0/1:36,18:55:99:480,0,1264 +chr1 248059476 rs12139390 A C 1833.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.530;DB;DP=132;Dels=0.00;FS=9.822;HaplotypeScore=4.8314;MLEAC=5;MLEAF=0.625;MQ=31.82;MQ0=0;MQRankSum=-1.376;QD=13.89;ReadPosRankSum=0.568;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:8,30:38:90:1036,90,0 0/1:24,6:30:99:164,0,496 0/1:22,10:32:99:284,0,500 0/1:19,13:32:99:395,0,268 +chr1 248247982 . T G 59 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.031;DP=36;Dels=0.03;FS=2.706;HaplotypeScore=10.9218;MLEAC=3;MLEAF=0.375;MQ=19.26;MQ0=0;MQRankSum=-0.031;QD=1.90;ReadPosRankSum=0.459;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:20:43,0,20 0/1:10,2:12:30:40,0,30 0/1:8,4:12:17:17,0,17 0/0:5,0:5:3:0,3,22 +chr1 248262942 . A C 98.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.455;DP=263;Dels=0.00;FS=148.343;HaplotypeScore=28.0634;MLEAC=3;MLEAF=0.375;MQ=37.01;MQ0=0;MQRankSum=-5.485;QD=0.51;ReadPosRankSum=-1.795;SB=0.781 GT:AD:DP:GQ:PL 0/1:64,8:73:44:44,0,2047 0/1:54,7:61:43:43,0,1452 0/0:67,3:70:94:0,94,2045 0/1:51,7:58:55:55,0,1215 +chr1 248263543 . A T 105.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.448;DP=217;Dels=0.01;FS=36.279;HaplotypeScore=4.3403;MLEAC=3;MLEAF=0.375;MQ=32.40;MQ0=0;MQRankSum=-3.403;QD=0.67;ReadPosRankSum=-0.559;SB=-9.175e-02 GT:AD:DP:GQ:PL 0/1:46,7:53:67:67,0,1173 0/1:55,7:62:63:63,0,1461 0/0:58,2:60:99:0,117,1607 0/1:36,4:40:19:19,0,758 +chr1 248487638 rs7555310 A G 99.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.271;DB;DP=333;Dels=0.00;FS=3.770;HaplotypeScore=2.1541;MLEAC=3;MLEAF=0.375;MQ=6.56;MQ0=0;MQRankSum=-1.267;QD=0.41;ReadPosRankSum=2.811;SB=-6.093e+01 GT:AD:DP:GQ:PL 0/0:59,29:88:6:0,6,54 0/1:9,65:74:26:26,0,29 0/1:10,75:86:70:81,0,70 0/1:8,77:85:35:35,0,53 +chr1 248722332 . A G 196.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.494;DP=64;Dels=0.05;FS=1.156;HaplotypeScore=3.9205;MLEAC=3;MLEAF=0.375;MQ=22.93;MQ0=0;MQRankSum=-0.320;QD=3.65;ReadPosRankSum=0.978;SB=-8.827e+01 GT:AD:DP:GQ:PL 0/0:9,0:9:15:0,15,148 0/1:7,4:11:82:82,0,160 0/1:10,5:15:55:55,0,92 0/1:19,7:26:99:103,0,272 +chr1 248801566 rs74154510 T G 802.70 . AC=6;AF=0.750;AN=8;BaseQRankSum=4.450;DB;DP=41;Dels=0.00;FS=14.935;HaplotypeScore=0.9477;MLEAC=8;MLEAF=1.00;MQ=24.27;MQ0=0;MQRankSum=4.117;QD=19.58;ReadPosRankSum=1.450;SB=-1.832e+02 GT:AD:DP:GQ:PL 1/1:2,3:5:9:100,9,0 1/1:3,14:17:36:403,36,0 0/1:2,6:8:1:172,0,1 0/1:4,7:11:2:166,0,2 +chr1 248845097 rs2000390 C T 2533.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.287;DB;DP=149;Dels=0.01;FS=3.143;HaplotypeScore=1.6432;MLEAC=5;MLEAF=0.625;MQ=38.45;MQ0=0;MQRankSum=-3.916;QD=17.00;ReadPosRankSum=1.255;SB=-8.470e+02 GT:AD:DP:GQ:PL 0/1:22,17:39:99:481,0,666 1/1:0,31:31:93:1253,93,0 0/1:29,18:47:99:569,0,892 0/1:20,10:30:99:276,0,673 +chr1 249066247 . C A 37.28 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.722;DP=33;Dels=0.00;FS=6.463;HaplotypeScore=0.3324;MLEAC=3;MLEAF=0.500;MQ=19.49;MQ0=0;MQRankSum=2.408;QD=1.62;ReadPosRankSum=0.803;SB=-2.812e-01 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,60 1/1:11,1:12:3:36,3,0 0/1:9,2:11:40:40,0,56 ./. +chr2 264895 rs4854300 G C 146.70 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.448;DB;DP=13;Dels=0.00;FS=10.792;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=17.27;MQ0=0;MQRankSum=1.448;QD=12.22;ReadPosRankSum=-1.738;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:24,3,0 1/1:0,3:3:6:49,6,0 1/1:0,7:7:12:110,12,0 ./. +chr2 447051 . G A 48.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=33.24;MQ0=0;MQRankSum=0.736;QD=16.00;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:37,3,0 1/1:1,1:2:3:44,3,0 ./. ./. +chr2 672740 rs192923284 C A 456.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.986;DB;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.1295;MLEAC=3;MLEAF=0.375;MQ=28.68;MQ0=0;MQRankSum=-1.622;QD=9.93;ReadPosRankSum=-0.039;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:45:0,45,535 0/1:7,10:17:99:223,0,112 0/1:8,8:17:99:194,0,149 0/1:8,4:12:83:83,0,175 +chr2 672746 . G A 74.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.113;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=6.3687;MLEAC=3;MLEAF=0.375;MQ=27.44;MQ0=0;MQRankSum=-0.460;QD=1.53;ReadPosRankSum=0.341;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,1:16:13:0,13,339 0/1:16,3:20:33:33,0,232 0/1:18,1:19:9:9,0,213 0/1:6,3:9:18:75,0,18 +chr2 1497933 . G A 147.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.778;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=1.2268;MLEAC=4;MLEAF=0.500;MQ=37.84;MQ0=0;MQRankSum=0.408;QD=2.34;ReadPosRankSum=-1.124;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,1:14:16:16,0,260 0/1:14,4:18:82:82,0,331 0/1:9,2:11:60:60,0,180 0/1:16,2:18:32:32,0,427 +chr2 1651842 rs11685976 C A 1863.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.792;DB;DP=184;Dels=0.01;FS=21.304;HaplotypeScore=3.2978;MLEAC=4;MLEAF=0.500;MQ=31.86;MQ0=0;MQRankSum=-0.518;QD=13.91;ReadPosRankSum=0.457;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:7,32:40:96:1170,96,0 0/0:50,0:50:99:0,129,1607 0/1:34,21:55:99:599,0,789 0/1:29,8:37:99:143,0,684 +chr2 1680788 . C A 76.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.803;DP=128;Dels=0.00;FS=18.158;HaplotypeScore=4.1453;MLEAC=3;MLEAF=0.375;MQ=35.96;MQ0=0;MQRankSum=-1.233;QD=0.80;ReadPosRankSum=1.160;SB=0.296 GT:AD:DP:GQ:PL 0/1:29,2:31:17:17,0,649 0/0:31,1:32:31:0,31,668 0/1:33,3:36:21:21,0,787 0/1:24,5:29:82:82,0,515 +chr2 2500150 rs1107824 G A 41.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=18.22;MQ0=0;MQRankSum=1.026;QD=6.84;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:3,1:4:3:35,3,0 1/1:1,1:2:3:39,3,0 ./. +chr2 3504819 rs34240449 A G 161.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.048;DB;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=36.85;MQ0=0;MQRankSum=2.255;QD=8.48;ReadPosRankSum=-0.441;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:33:0,33,431 1/1:1,3:4:9:121,9,0 0/1:6,2:8:62:62,0,213 0/1:5,1:6:25:25,0,174 +chr2 3800251 . C T 100.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.871;DP=147;Dels=0.00;FS=118.206;HaplotypeScore=9.8038;MLEAC=3;MLEAF=0.375;MQ=36.19;MQ0=0;MQRankSum=-5.785;QD=0.94;ReadPosRankSum=0.336;SB=0.360 GT:AD:DP:GQ:PL 0/1:35,6:41:26:26,0,1186 0/1:36,4:40:28:28,0,971 0/0:34,6:40:11:0,11,1007 0/1:20,6:26:89:89,0,518 +chr2 4089316 rs11888433 A G 33.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DB;DP=11;Dels=0.00;FS=8.751;HaplotypeScore=0.6651;MLEAC=4;MLEAF=1.00;MQ=13.82;MQ0=0;MQRankSum=1.231;QD=5.50;ReadPosRankSum=-0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:2:3:26,3,0 1/1:2,1:4:3:40,3,0 +chr2 4094988 rs10178647 G C 88.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.727;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=33.58;MQ0=0;MQRankSum=0.727;QD=22.06;ReadPosRankSum=0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:41,3,0 ./. 1/1:0,1:1:3:39,3,0 1/1:1,1:2:3:43,3,0 +chr2 8910976 . C T 268.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.110;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.8624;MLEAC=4;MLEAF=0.500;MQ=30.99;MQ0=0;MQRankSum=-1.647;QD=3.44;ReadPosRankSum=-1.184;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:99:101,0,187 0/1:23,3:26:52:52,0,369 0/1:13,5:19:92:92,0,273 0/1:11,3:14:66:66,0,211 +chr2 8943291 rs2356658 G A 165.45 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.602;DB;DP=32;Dels=0.03;FS=13.222;HaplotypeScore=0.9748;MLEAC=5;MLEAF=0.833;MQ=19.79;MQ0=0;MQRankSum=2.177;QD=6.62;ReadPosRankSum=-0.265;SB=13.94 GT:AD:DP:GQ:PL ./. 1/1:4,8:13:6:55,6,0 1/1:5,4:9:9:92,9,0 1/1:0,2:2:6:55,6,0 +chr2 9517204 . C G 376.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.421;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.5973;MLEAC=4;MLEAF=0.500;MQ=32.08;MQ0=0;MQRankSum=-2.424;QD=3.69;ReadPosRankSum=2.722;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,6:25:99:124,0,387 0/1:22,8:30:99:157,0,570 0/1:22,5:27:82:82,0,514 0/1:17,3:20:56:56,0,339 +chr2 9568955 . A T 46.89 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.034;DP=36;Dels=0.00;FS=2.601;HaplotypeScore=1.7113;MLEAC=4;MLEAF=0.500;MQ=31.39;MQ0=0;MQRankSum=-0.374;QD=1.30;ReadPosRankSum=1.053;SB=-1.742e-01 GT:AD:DP:GQ:PL 0/1:6,1:7:17:17,0,105 0/1:9,2:11:41:41,0,147 0/1:12,1:13:13:13,0,79 0/1:4,1:5:18:18,0,71 +chr2 9580540 rs111411247 G GT 1209.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.999;DB;DP=83;FS=0.000;HaplotypeScore=15.0628;MLEAC=4;MLEAF=0.500;MQ=33.35;MQ0=0;MQRankSum=-2.899;QD=14.57;RPA=2,3;RU=T;ReadPosRankSum=-0.157;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:13,10:19:99:476,0,107 0/1:23,5:26:99:416,0,415 0/1:19,6:25:99:297,0,481 0/1:6,1:5:12:72,0,12 +chr2 9616161 rs61732203 C G 204.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.114;DB;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.2675;MLEAC=3;MLEAF=0.375;MQ=38.44;MQ0=0;MQRankSum=-1.688;QD=5.53;ReadPosRankSum=0.638;SB=-6.191e+01 GT:AD:DP:GQ:PL 0/0:11,0:11:33:0,33,459 0/1:13,3:16:79:79,0,320 0/1:11,2:13:47:47,0,402 0/1:4,4:8:99:122,0,106 +chr2 9642478 rs34367192 C T 1542.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.770;DB;DP=85;Dels=0.00;FS=12.800;HaplotypeScore=0.1446;MLEAC=5;MLEAF=0.625;MQ=41.21;MQ0=0;MQRankSum=-2.461;QD=18.15;ReadPosRankSum=1.289;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:69:918,69,0 0/1:15,7:22:99:226,0,448 0/1:16,6:22:99:193,0,633 0/1:10,7:18:99:251,0,281 +chr2 9891483 rs6761920 A T 41.28 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.736;DB;DP=3;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=34.78;MQ0=0;MQRankSum=0.736;QD=13.76;ReadPosRankSum=0.736;SB=1.71 GT:AD:DP:GQ:PL 1/1:0,1:1:3:43,3,0 ./. 0/1:1,1:2:21:33,0,21 ./. +chr2 10132410 rs35950483 T C 148.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.648;DB;DP=20;Dels=0.00;FS=3.136;HaplotypeScore=1.1205;MLEAC=3;MLEAF=0.375;MQ=30.79;MQ0=0;MQRankSum=1.237;QD=8.76;ReadPosRankSum=-0.295;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,3:5:31:104,0,31 0/0:3,0:3:3:0,3,44 0/1:6,1:7:31:31,0,86 0/1:3,2:5:34:55,0,34 +chr2 10564740 . G T 82.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.047;DP=26;Dels=0.00;FS=2.680;HaplotypeScore=2.7925;MLEAC=2;MLEAF=0.250;MQ=29.87;MQ0=0;MQRankSum=0.611;QD=5.49;ReadPosRankSum=1.135;SB=0.681 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,76 0/1:6,2:8:52:52,0,95 0/1:4,3:7:71:71,0,82 0/0:8,0:8:15:0,15,126 +chr2 10909015 . C A 51.34 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.064;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.4803;MLEAC=3;MLEAF=0.375;MQ=31.80;MQ0=0;MQRankSum=-1.648;QD=0.97;ReadPosRankSum=-0.644;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,4:26:82:82,0,481 0/1:16,1:17:5:5,0,364 0/0:16,1:17:13:0,13,395 0/1:9,1:10:2:2,0,228 +chr2 10942567 rs1686434 G A 495.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.231;DB;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8826;MLEAC=2;MLEAF=0.250;MQ=33.04;MQ0=0;MQRankSum=-1.996;QD=10.11;ReadPosRankSum=-1.038;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:17,8:25:99:182,0,529 0/1:12,12:24:99:355,0,334 0/0:24,0:24:63:0,63,780 0/0:10,0:10:30:0,30,359 +chr2 11053033 . T G 171.17 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.901;DP=49;Dels=0.00;FS=14.618;HaplotypeScore=1.7698;MLEAC=4;MLEAF=0.500;MQ=29.55;MQ0=0;MQRankSum=-0.194;QD=3.49;ReadPosRankSum=-0.618;SB=-2.478e+00 GT:AD:DP:GQ:PL 0/1:12,4:16:70:70,0,227 0/1:8,3:11:54:76,0,54 0/1:13,1:14:8:8,0,282 0/1:6,2:8:16:59,0,16 +chr2 11351980 . A T 39.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.058;DP=48;Dels=0.04;FS=2.634;HaplotypeScore=2.3643;MLEAC=3;MLEAF=0.375;MQ=26.19;MQ0=0;MQRankSum=1.604;QD=1.01;ReadPosRankSum=-0.034;SB=0.976 GT:AD:DP:GQ:PL 0/1:14,2:16:40:40,0,184 0/0:7,0:7:12:0,12,140 0/1:16,1:17:20:20,0,24 1/1:5,1:6:3:23,3,0 +chr2 11725989 . A C 50.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.752;DP=140;Dels=0.01;FS=136.962;HaplotypeScore=19.1149;MLEAC=2;MLEAF=0.250;MQ=31.23;MQ0=0;MQRankSum=-4.703;QD=0.73;ReadPosRankSum=1.873;SB=-2.761e+00 GT:AD:DP:GQ:PL 0/1:26,7:33:66:66,0,603 0/0:32,2:34:75:0,75,913 0/1:29,5:34:26:26,0,654 0/0:33,3:37:39:0,39,936 +chr2 11750783 . C T 45.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.106;DP=65;Dels=0.03;FS=4.872;HaplotypeScore=4.0462;MLEAC=4;MLEAF=0.500;MQ=32.48;MQ0=0;MQRankSum=-2.423;QD=0.69;ReadPosRankSum=2.155;SB=-1.144e+00 GT:AD:DP:GQ:PL 0/1:13,1:14:1:1,0,329 0/1:17,2:19:13:13,0,348 0/1:15,2:17:18:18,0,383 0/1:10,3:13:53:53,0,252 +chr2 11780712 . C G 131.85 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.382;DP=17;Dels=0.00;FS=4.771;HaplotypeScore=2.5965;MLEAC=6;MLEAF=1.00;MQ=23.12;MQ0=0;MQRankSum=2.262;QD=8.79;ReadPosRankSum=1.931;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,5:7:9:90,9,0 ./. 1/1:2,2:4:6:46,6,0 1/1:3,1:4:3:32,3,0 +chr2 16736289 . C G 219.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.802;DP=49;Dels=0.02;FS=2.846;HaplotypeScore=6.2665;MLEAC=4;MLEAF=0.500;MQ=24.89;MQ0=0;MQRankSum=1.349;QD=4.48;ReadPosRankSum=-0.427;SB=-1.196e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:55:55,0,98 0/1:8,2:10:51:51,0,58 0/1:10,4:14:41:41,0,111 0/1:5,5:10:84:115,0,84 +chr2 17860174 . A T 61.58 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.401;DP=74;Dels=0.00;FS=53.264;HaplotypeScore=5.5039;MLEAC=3;MLEAF=0.375;MQ=29.42;MQ0=0;MQRankSum=-1.308;QD=1.14;ReadPosRankSum=1.282;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/0:19,1:20:8:0,8,373 0/1:20,4:24:53:53,0,252 0/1:22,2:24:25:25,0,391 0/1:5,1:6:26:26,0,60 +chr2 17877524 . A T 79.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.351;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3925;MLEAC=3;MLEAF=0.375;MQ=30.97;MQ0=0;MQRankSum=-2.224;QD=1.42;ReadPosRankSum=1.528;SB=-2.965e+00 GT:AD:DP:GQ:PL 0/0:23,0:23:45:0,45,559 0/1:19,2:21:10:10,0,464 0/1:21,5:26:69:69,0,329 0/1:7,2:9:43:43,0,53 +chr2 17881412 . G A 422.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.351;DP=93;Dels=0.02;FS=2.811;HaplotypeScore=1.9150;MLEAC=4;MLEAF=0.500;MQ=30.36;MQ0=0;MQRankSum=-4.195;QD=4.54;ReadPosRankSum=1.932;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,6:21:99:147,0,339 0/1:23,5:28:52:52,0,651 0/1:22,9:32:99:217,0,417 0/1:6,4:10:49:49,0,77 +chr2 20130338 . T G 504.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.145;DP=143;Dels=0.02;FS=22.070;HaplotypeScore=5.5817;MLEAC=4;MLEAF=0.500;MQ=34.30;MQ0=0;MQRankSum=-2.676;QD=3.53;ReadPosRankSum=1.800;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,8:36:99:192,0,546 0/1:22,4:26:87:87,0,439 0/1:36,8:45:99:183,0,695 0/1:28,5:33:85:85,0,569 +chr2 20189880 . C G 44.35 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.922;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=22.14;MQ0=0;MQRankSum=-1.638;QD=6.34;ReadPosRankSum=2.017;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:22,3,0 0/1:2,3:5:49:61,0,49 0/0:2,0:2:6:0,6,66 +chr2 20451531 . C T 74.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.792;DP=93;Dels=0.02;FS=0.000;HaplotypeScore=1.4158;MLEAC=2;MLEAF=0.250;MQ=30.75;MQ0=0;MQRankSum=-1.983;QD=2.02;ReadPosRankSum=0.701;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,5:28:97:97,0,334 0/0:23,2:25:1:0,1,535 0/0:28,2:30:25:0,25,494 0/1:7,1:8:17:17,0,53 +chr2 20494199 . CT C 1250.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.381;DP=159;FS=67.356;HaplotypeScore=135.5207;MLEAC=4;MLEAF=0.500;MQ=25.62;MQ0=0;MQRankSum=-1.775;QD=7.87;ReadPosRankSum=0.446;SB=-1.500e+01 GT:AD:DP:GQ:PL 0/1:23,14:27:99:462,0,425 0/1:32,8:32:99:163,0,714 0/1:34,7:36:99:159,0,881 0/1:20,16:28:99:518,0,376 +chr2 20823612 rs13030108 A G 457.42 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.666;DB;DP=26;Dels=0.04;FS=23.201;HaplotypeScore=0.7350;MLEAC=8;MLEAF=1.00;MQ=23.69;MQ0=0;MQRankSum=3.666;QD=17.59;ReadPosRankSum=-0.141;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:9:107,9,0 1/1:2,4:6:12:127,12,0 1/1:3,5:8:15:174,15,0 1/1:4,3:7:9:88,9,0 +chr2 21230174 . G T 33.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.905;DP=125;Dels=0.00;FS=23.082;HaplotypeScore=0.7386;MLEAC=3;MLEAF=0.375;MQ=35.39;MQ0=0;MQRankSum=-2.294;QD=0.38;ReadPosRankSum=-0.616;SB=1.84 GT:AD:DP:GQ:PL 0/0:36,1:37:36:0,36,836 0/1:34,4:38:32:32,0,806 0/1:34,4:38:31:31,0,780 0/1:11,1:12:13:13,0,136 +chr2 21233520 . A G 127.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.600;DP=165;Dels=0.00;FS=109.745;HaplotypeScore=5.6057;MLEAC=4;MLEAF=0.500;MQ=35.10;MQ0=0;MQRankSum=-5.596;QD=0.77;ReadPosRankSum=1.236;SB=-1.082e-02 GT:AD:DP:GQ:PL 0/1:44,10:54:24:24,0,1422 0/1:39,6:45:56:56,0,1324 0/1:45,8:53:57:57,0,1413 0/1:11,2:13:33:33,0,291 +chr2 23621999 . G T 92.90 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.916;DP=195;Dels=0.02;FS=0.000;HaplotypeScore=5.9103;MLEAC=4;MLEAF=0.500;MQ=18.02;MQ0=0;MQRankSum=3.462;QD=0.48;ReadPosRankSum=-0.586;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,2:33:32:32,0,58 0/1:46,4:50:72:72,0,174 0/1:53,2:55:20:20,0,268 0/1:51,3:54:11:11,0,121 +chr2 23907443 . C A 115.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.246;DP=140;Dels=0.00;FS=6.754;HaplotypeScore=2.1114;MLEAC=3;MLEAF=0.375;MQ=30.36;MQ0=0;MQRankSum=-1.291;QD=1.19;ReadPosRankSum=2.850;SB=-1.259e-02 GT:AD:DP:GQ:PL 0/1:19,4:23:74:74,0,334 0/1:31,4:35:40:40,0,574 0/0:42,1:43:68:0,68,1045 0/1:34,5:39:45:45,0,736 +chr2 23926233 rs72796138 C T 38.19 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.922;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=34.73;MQ0=0;MQRankSum=0.198;QD=12.73;ReadPosRankSum=-0.198;SB=0.357 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,38 0/0:3,0:3:9:0,9,116 ./. 1/1:1,2:3:6:76,6,0 +chr2 24087621 rs72788214 A C 337.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.166;DB;DP=72;Dels=0.00;FS=2.484;HaplotypeScore=4.4043;MLEAC=3;MLEAF=0.375;MQ=26.12;MQ0=0;MQRankSum=0.024;QD=7.19;ReadPosRankSum=0.734;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:18:33:33,0,242 0/0:24,0:25:48:0,48,522 0/1:13,12:25:99:296,0,224 0/1:2,2:4:52:52,0,55 +chr2 24253705 . A C 38.12 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.402;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=1.6528;MLEAC=1;MLEAF=0.125;MQ=34.44;MQ0=0;MQRankSum=-1.251;QD=1.82;ReadPosRankSum=0.675;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,1:21:10:0,10,492 0/0:12,0:12:27:0,27,354 0/0:17,0:17:48:0,48,593 0/1:15,4:20:74:74,0,452 +chr2 24276820 . G T 33.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.591;DP=139;Dels=0.00;FS=9.461;HaplotypeScore=13.9436;MLEAC=2;MLEAF=0.250;MQ=26.59;MQ0=0;MQRankSum=-3.484;QD=0.50;ReadPosRankSum=-0.265;SB=-3.573e-02 GT:AD:DP:GQ:PL 0/0:30,6:36:17:0,17,500 0/0:33,3:36:27:0,27,521 0/1:35,5:40:24:24,0,515 0/1:22,5:27:51:51,0,260 +chr2 24291445 rs72783611 C T 475.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.211;DB;DP=42;Dels=0.05;FS=3.123;HaplotypeScore=0.4867;MLEAC=4;MLEAF=0.500;MQ=27.51;MQ0=0;MQRankSum=-0.464;QD=11.32;ReadPosRankSum=-0.211;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,6:11:79:155,0,79 0/1:5,6:11:99:165,0,122 0/1:3,5:8:91:129,0,91 0/1:7,3:10:69:69,0,151 +chr2 24307128 . C T 40.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.154;DP=83;Dels=0.00;FS=62.251;HaplotypeScore=1.3609;MLEAC=3;MLEAF=0.375;MQ=31.14;MQ0=0;MQRankSum=-0.550;QD=0.66;ReadPosRankSum=-2.421;SB=5.66 GT:AD:DP:GQ:PL 0/1:18,2:20:30:30,0,421 0/1:17,3:20:45:45,0,403 0/0:21,0:21:33:0,33,404 0/1:20,2:22:8:8,0,511 +chr2 24345436 rs144865682 T A 133.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.454;DB;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=3.0840;MLEAC=3;MLEAF=0.375;MQ=38.47;MQ0=0;MQRankSum=-1.286;QD=1.04;ReadPosRankSum=0.450;SB=2.39 GT:AD:DP:GQ:PL 0/0:42,3:45:9:0,9,1269 0/1:40,5:45:61:61,0,1128 0/1:42,4:46:9:9,0,1197 0/1:32,5:37:99:105,0,698 +chr2 24933689 rs7593430 A C 284.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.205;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=33.27;MQ0=0;MQRankSum=1.376;QD=11.37;ReadPosRankSum=-0.029;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:97:97,0,175 0/1:4,3:7:74:74,0,108 0/1:3,4:7:51:152,0,51 ./. +chr2 24985555 . G T 34.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-6.031;DP=250;Dels=0.02;FS=8.738;HaplotypeScore=42.8371;MLEAC=2;MLEAF=0.250;MQ=32.72;MQ0=0;MQRankSum=-6.291;QD=0.30;ReadPosRankSum=1.986;SB=-5.086e-03 GT:AD:DP:GQ:PL 0/1:55,9:68:65:65,0,1205 0/0:52,4:58:26:0,26,1082 0/0:66,6:72:48:0,48,1663 0/1:39,7:47:10:10,0,923 +chr2 24991238 . T G 215.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.873;DP=160;Dels=0.00;FS=18.964;HaplotypeScore=1.1441;MLEAC=4;MLEAF=0.500;MQ=37.04;MQ0=0;MQRankSum=1.971;QD=1.35;ReadPosRankSum=2.181;SB=-7.154e-02 GT:AD:DP:GQ:PL 0/1:40,4:44:30:30,0,959 0/1:40,3:43:18:18,0,899 0/1:32,5:37:70:70,0,705 0/1:29,7:36:99:140,0,537 +chr2 25038268 rs2082881 G A 1206.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.458;DB;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.7121;MLEAC=4;MLEAF=0.500;MQ=36.97;MQ0=0;MQRankSum=-5.898;QD=6.59;ReadPosRankSum=0.231;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,16:49:99:450,0,1035 0/1:32,12:44:99:337,0,934 0/1:36,9:45:99:171,0,1248 0/1:32,13:45:99:291,0,1062 +chr2 25042838 . G C 48.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.478;DP=83;Dels=0.00;FS=94.098;HaplotypeScore=9.3234;MLEAC=3;MLEAF=0.375;MQ=30.98;MQ0=0;MQRankSum=-4.385;QD=0.79;ReadPosRankSum=0.424;SB=-1.751e+00 GT:AD:DP:GQ:PL 0/1:13,4:17:69:69,0,302 0/1:17,6:23:17:17,0,454 0/0:16,6:22:20:0,20,490 0/1:17,4:21:3:3,0,494 +chr2 25376530 . G C 58.38 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.932;DP=21;Dels=0.05;FS=6.368;HaplotypeScore=6.6455;MLEAC=5;MLEAF=0.833;MQ=20.01;MQ0=0;MQRankSum=1.932;QD=3.43;ReadPosRankSum=-1.031;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:26,3,0 ./. 1/1:4,2:6:6:53,6,0 0/1:6,2:8:18:18,0,20 +chr2 25468758 . A T 143.30 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.839;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=6.5266;MLEAC=4;MLEAF=0.500;MQ=30.63;MQ0=0;MQRankSum=0.516;QD=1.86;ReadPosRankSum=1.187;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,4:15:99:116,0,144 0/1:20,3:23:19:19,0,378 0/1:21,3:24:43:43,0,495 0/1:13,1:14:7:7,0,229 +chr2 25470540 . A G 178.10 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.069;DP=152;Dels=0.00;FS=20.194;HaplotypeScore=0.9880;MLEAC=2;MLEAF=0.250;MQ=25.18;MQ0=0;MQRankSum=3.251;QD=2.07;ReadPosRankSum=-1.122;SB=3.44 GT:AD:DP:GQ:PL 0/0:29,1:30:8:0,8,333 0/0:35,1:36:28:0,28,478 0/1:38,3:41:21:21,0,474 0/1:37,8:45:99:198,0,337 +chr2 26022277 rs34816614 T C 340.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.078;DB;DP=248;Dels=0.00;FS=1.051;HaplotypeScore=17.3763;MLEAC=1;MLEAF=0.125;MQ=29.78;MQ0=0;MQRankSum=-3.098;QD=5.88;ReadPosRankSum=0.587;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:40,18:58:99:377,0,935 0/0:78,0:78:99:0,171,2093 0/0:64,0:65:99:0,138,1655 0/0:47,0:47:96:0,96,1174 +chr2 26508187 rs2303894 A G 354 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.403;DB;DP=69;Dels=0.00;FS=4.466;HaplotypeScore=0.9710;MLEAC=1;MLEAF=0.125;MQ=38.67;MQ0=0;MQRankSum=-3.579;QD=18.63;ReadPosRankSum=0.048;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,1:19:45:0,45,625 0/1:7,12:19:99:390,0,190 0/0:24,0:24:69:0,69,950 0/0:7,0:7:21:0,21,287 +chr2 26532019 . T G 81.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.685;DP=170;Dels=0.00;FS=11.680;HaplotypeScore=2.4554;MLEAC=3;MLEAF=0.375;MQ=33.61;MQ0=0;MQRankSum=-2.955;QD=0.64;ReadPosRankSum=2.239;SB=-3.367e+00 GT:AD:DP:GQ:PL 0/1:42,3:45:3:3,0,586 0/1:38,3:41:9:9,0,713 0/0:42,1:43:52:0,52,757 0/1:35,6:41:99:109,0,512 +chr2 26534455 . T G 99.96 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.842;DP=140;Dels=0.00;FS=29.779;HaplotypeScore=10.3115;MLEAC=2;MLEAF=0.250;MQ=30.28;MQ0=0;MQRankSum=-2.011;QD=1.45;ReadPosRankSum=0.147;SB=-1.210e+00 GT:AD:DP:GQ:PL 0/0:32,3:35:12:0,12,738 0/1:34,5:39:65:65,0,641 0/0:33,3:36:11:0,11,673 0/1:25,5:30:76:76,0,365 +chr2 26537499 rs10187359 A C 2100.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.957;DB;DP=67;Dels=0.03;FS=58.030;HaplotypeScore=3.1492;MLEAC=8;MLEAF=1.00;MQ=33.12;MQ0=0;MQRankSum=3.314;QD=31.36;ReadPosRankSum=0.541;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,17:19:51:645,51,0 1/1:2,14:16:42:526,42,0 1/1:0,13:13:36:445,36,0 1/1:1,16:17:45:524,45,0 +chr2 26590118 rs6731447 C T 1459.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.509;DB;DP=134;Dels=0.00;FS=2.735;HaplotypeScore=1.5559;MLEAC=4;MLEAF=0.500;MQ=38.54;MQ0=0;MQRankSum=0.246;QD=10.89;ReadPosRankSum=1.715;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,11:35:99:344,0,764 0/1:24,10:34:99:325,0,708 0/1:18,19:37:99:674,0,506 0/1:22,6:28:99:159,0,739 +chr2 26663215 rs56218945 A G 51.03 . AC=2;AF=0.500;AN=4;BaseQRankSum=2.878;DB;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=11.52;MQ0=0;MQRankSum=0.919;QD=7.29;ReadPosRankSum=-0.674;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,6:7:9:87,9,0 0/0:5,4:9:3:0,3,23 ./. +chr2 26677810 rs2280516 A G 384.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.561;DB;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=0.4988;MLEAC=8;MLEAF=1.00;MQ=22.34;MQ0=0;MQRankSum=1.561;QD=16.00;ReadPosRankSum=-0.173;SB=-3.296e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:162,15,0 1/1:1,4:5:6:58,6,0 1/1:2,3:5:3:31,3,0 1/1:1,6:7:15:171,15,0 +chr2 26679382 . A T 115.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.240;DP=97;Dels=0.00;FS=8.105;HaplotypeScore=14.2311;MLEAC=3;MLEAF=0.375;MQ=26.14;MQ0=0;MQRankSum=1.839;QD=1.54;ReadPosRankSum=-0.160;SB=-6.297e-01 GT:AD:DP:GQ:PL 0/1:19,2:22:38:38,0,100 0/1:24,1:25:13:13,0,99 0/1:23,4:28:19:107,0,19 0/0:21,0:22:9:0,9,87 +chr2 26703163 . A G 227.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.457;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.8823;MLEAC=3;MLEAF=0.375;MQ=28.35;MQ0=0;MQRankSum=0.709;QD=3.12;ReadPosRankSum=0.497;SB=0.888 GT:AD:DP:GQ:PL 0/1:25,3:28:56:56,0,463 0/1:18,8:26:99:188,0,311 0/1:17,2:19:26:26,0,333 0/0:21,2:23:6:0,6,316 +chr2 26750782 rs61746568 G A 134.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.016;DB;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.7474;MLEAC=1;MLEAF=0.125;MQ=29.19;MQ0=0;MQRankSum=1.042;QD=6.43;ReadPosRankSum=0.805;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/1:14,7:21:99:171,0,217 0/0:25,0:25:57:0,57,651 0/0:23,0:24:60:0,60,707 0/0:24,0:24:54:0,54,594 +chr2 27150240 . T G 175.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.271;DP=110;Dels=0.04;FS=90.851;HaplotypeScore=5.6007;MLEAC=4;MLEAF=0.500;MQ=36.61;MQ0=0;MQRankSum=-4.968;QD=1.60;ReadPosRankSum=1.164;SB=-2.344e-01 GT:AD:DP:GQ:PL 0/1:23,4:27:65:65,0,769 0/1:21,5:26:85:85,0,591 0/1:25,3:28:12:12,0,761 0/1:20,5:25:56:56,0,616 +chr2 27236036 . G A 65.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.180;DP=66;Dels=0.02;FS=4.919;HaplotypeScore=5.0336;MLEAC=3;MLEAF=0.375;MQ=28.95;MQ0=0;MQRankSum=-0.912;QD=1.27;ReadPosRankSum=1.448;SB=0.011 GT:AD:DP:GQ:PL 0/0:14,0:14:27:0,27,317 0/1:14,2:16:35:35,0,154 0/1:18,3:21:45:45,0,308 0/1:11,2:14:29:29,0,200 +chr2 27259368 . T A 309.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.289;DP=222;Dels=0.01;FS=198.188;HaplotypeScore=26.8284;MLEAC=4;MLEAF=0.500;MQ=28.94;MQ0=0;MQRankSum=-4.288;QD=1.39;ReadPosRankSum=2.711;SB=-2.271e-02 GT:AD:DP:GQ:PL 0/1:42,9:51:99:127,0,931 0/1:49,6:55:33:33,0,774 0/1:47,15:62:99:166,0,1019 0/1:43,8:51:26:26,0,592 +chr2 27275924 . A C 44.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.683;DP=139;Dels=0.01;FS=9.628;HaplotypeScore=13.3590;MLEAC=2;MLEAF=0.250;MQ=27.42;MQ0=0;MQRankSum=0.686;QD=0.81;ReadPosRankSum=-1.848;SB=1.23 GT:AD:DP:GQ:PL 0/1:23,3:26:36:36,0,351 0/0:35,0:35:57:0,57,586 0/0:46,2:48:27:0,27,706 0/1:26,3:29:50:50,0,303 +chr2 27278594 . C A 60.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.300;DP=153;Dels=0.00;FS=50.996;HaplotypeScore=15.1280;MLEAC=1;MLEAF=0.125;MQ=34.63;MQ0=0;MQRankSum=-3.066;QD=1.79;ReadPosRankSum=0.606;SB=-5.510e+00 GT:AD:DP:GQ:PL 0/1:28,6:34:97:97,0,819 0/0:40,2:43:68:0,68,1121 0/0:47,1:48:69:0,69,1240 0/0:27,1:28:40:0,40,761 +chr2 27324708 . C A 149.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.182;DP=91;Dels=0.00;FS=37.861;HaplotypeScore=9.1301;MLEAC=3;MLEAF=0.375;MQ=26.31;MQ0=0;MQRankSum=-2.437;QD=2.14;ReadPosRankSum=-0.378;SB=0.300 GT:AD:DP:GQ:PL 0/1:22,4:26:62:62,0,279 0/0:20,1:21:30:0,30,317 0/1:19,6:25:62:62,0,229 0/1:14,5:19:69:69,0,241 +chr2 27353630 rs41288799 G C 502.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.374;DB;DP=59;Dels=0.00;FS=5.086;HaplotypeScore=1.1567;MLEAC=3;MLEAF=0.375;MQ=34.22;MQ0=0;MQRankSum=-0.478;QD=11.97;ReadPosRankSum=0.700;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:90:90,0,229 0/0:17,0:17:39:0,39,520 0/1:10,9:19:99:292,0,247 0/1:6,5:11:99:164,0,121 +chr2 27454366 . A C 39.98 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.045;DP=103;Dels=0.01;FS=9.908;HaplotypeScore=9.1851;MLEAC=2;MLEAF=0.250;MQ=29.73;MQ0=0;MQRankSum=-1.196;QD=0.80;ReadPosRankSum=0.023;SB=1.10 GT:AD:DP:GQ:PL 0/0:22,0:23:36:0,36,407 0/1:22,3:25:17:17,0,471 0/0:26,2:29:13:0,13,447 0/1:20,4:25:64:64,0,376 +chr2 27598537 . C G 217.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.200;DP=121;Dels=0.00;FS=9.264;HaplotypeScore=5.4965;MLEAC=4;MLEAF=0.500;MQ=29.66;MQ0=0;MQRankSum=-2.552;QD=1.80;ReadPosRankSum=-1.318;SB=-1.522e-02 GT:AD:DP:GQ:PL 0/1:28,3:31:38:38,0,608 0/1:27,9:36:99:122,0,561 0/1:24,5:29:72:72,0,613 0/1:20,4:25:28:28,0,467 +chr2 27669137 rs61742074 A G 214.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.034;DB;DP=154;Dels=0.02;FS=15.201;HaplotypeScore=10.2352;MLEAC=1;MLEAF=0.125;MQ=31.22;MQ0=0;MQRankSum=-1.340;QD=5.51;ReadPosRankSum=0.065;SB=-9.715e+00 GT:AD:DP:GQ:PL 0/0:38,0:38:93:0,93,1143 0/1:28,10:38:99:251,0,434 0/0:43,0:43:93:0,93,1090 0/0:29,2:32:27:0,27,542 +chr2 27707054 . T A 319.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.134;DP=73;Dels=0.01;FS=22.161;HaplotypeScore=6.4663;MLEAC=4;MLEAF=0.500;MQ=23.07;MQ0=0;MQRankSum=-0.424;QD=4.38;ReadPosRankSum=2.080;SB=-2.716e+00 GT:AD:DP:GQ:PL 0/1:8,10:18:14:134,0,14 0/1:14,5:19:99:104,0,125 0/1:16,4:20:47:47,0,103 0/1:8,7:15:10:77,0,10 +chr2 27789916 . C T 62.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.195;DP=156;Dels=0.01;FS=18.713;HaplotypeScore=0.7332;MLEAC=1;MLEAF=0.125;MQ=31.75;MQ0=0;MQRankSum=-2.273;QD=3.00;ReadPosRankSum=-0.093;SB=-9.770e-03 GT:AD:DP:GQ:PL 0/0:39,0:39:84:0,84,933 0/0:49,2:51:80:0,80,1189 0/0:44,0:44:99:0,108,1247 0/1:16,5:21:99:99,0,383 +chr2 27799393 . A T 49.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.604;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=3;MLEAF=0.375;MQ=39.79;MQ0=0;MQRankSum=-3.085;QD=0.92;ReadPosRankSum=0.310;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:54:54,0,500 0/0:15,1:16:13:0,13,512 0/1:17,2:19:3:3,0,588 0/1:14,2:16:33:33,0,373 +chr2 27855596 . A T 329.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.363;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7339;MLEAC=4;MLEAF=0.500;MQ=30.71;MQ0=0;MQRankSum=0.403;QD=2.52;ReadPosRankSum=-1.103;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,4:36:71:71,0,503 0/1:36,9:45:99:147,0,849 0/1:33,6:39:99:106,0,549 0/1:9,2:11:48:48,0,71 +chr2 27892053 . T C 69.43 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.568;DP=81;Dels=0.05;FS=10.515;HaplotypeScore=21.6376;MLEAC=5;MLEAF=0.625;MQ=20.83;MQ0=0;MQRankSum=-1.836;QD=0.86;ReadPosRankSum=2.807;SB=-7.336e-01 GT:AD:DP:GQ:PL 0/1:19,6:25:47:47,0,202 0/1:19,5:25:28:28,0,130 0/1:16,4:20:5:5,0,206 1/1:4,3:7:3:31,3,0 +chr2 28635365 . C G 36.21 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.518;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.8472;MLEAC=4;MLEAF=0.500;MQ=24.76;MQ0=0;MQRankSum=0.618;QD=0.72;ReadPosRankSum=-1.319;SB=-3.665e-01 GT:AD:DP:GQ:PL 0/1:17,2:19:4:4,0,202 0/0:14,0:14:12:0,12,132 0/1:15,2:17:26:26,0,212 1/1:12,2:14:6:50,6,0 +chr2 28754968 . T G 43.37 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.491;DP=187;Dels=0.00;FS=131.756;HaplotypeScore=1.0504;MLEAC=1;MLEAF=0.125;MQ=40.69;MQ0=0;MQRankSum=-4.808;QD=0.77;ReadPosRankSum=-0.811;SB=-3.118e+00 GT:AD:DP:GQ:PL 0/0:42,3:45:36:0,36,1578 0/0:41,4:45:5:0,5,1569 0/1:49,7:56:79:79,0,1680 0/0:41,0:41:99:0,117,1633 +chr2 28888161 rs55902327 G A 69.23 . AC=4;AF=1.00;AN=4;BaseQRankSum=2.404;DB;DP=15;Dels=0.00;FS=12.601;HaplotypeScore=1.2482;MLEAC=4;MLEAF=1.00;MQ=14.82;MQ0=0;MQRankSum=2.404;QD=5.33;ReadPosRankSum=-0.740;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:6,1:7:3:22,3,0 1/1:4,2:6:6:81,6,0 +chr2 29045242 . A C 85.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.714;DP=43;Dels=0.00;FS=32.926;HaplotypeScore=2.5322;MLEAC=3;MLEAF=0.375;MQ=32.65;MQ0=0;MQRankSum=-1.183;QD=2.31;ReadPosRankSum=-0.121;SB=2.98 GT:AD:DP:GQ:PL 0/1:6,2:8:45:45,0,170 0/1:12,2:14:51:51,0,194 0/1:13,2:15:32:32,0,259 0/0:6,0:6:9:0,9,126 +chr2 29237396 . A T 78 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.293;DP=63;Dels=0.00;FS=49.513;HaplotypeScore=2.4854;MLEAC=1;MLEAF=0.125;MQ=28.35;MQ0=0;MQRankSum=-0.721;QD=5.57;ReadPosRankSum=0.939;SB=-4.017e+00 GT:AD:DP:GQ:PL 0/0:15,0:15:36:0,36,385 0/0:13,0:13:24:0,24,257 0/0:21,0:21:48:0,48,511 0/1:9,5:14:99:114,0,176 +chr2 29520025 . T A 44.31 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.096;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.0574;MLEAC=1;MLEAF=0.125;MQ=24.31;MQ0=0;MQRankSum=1.534;QD=3.16;ReadPosRankSum=-1.346;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:8:9:0,9,108 0/0:14,0:14:12:0,12,116 0/1:11,3:14:80:80,0,115 0/0:9,0:9:12:0,12,122 +chr2 31010034 . T C 95.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.917;DP=82;Dels=0.02;FS=27.582;HaplotypeScore=19.0844;MLEAC=3;MLEAF=0.375;MQ=28.51;MQ0=0;MQRankSum=-1.528;QD=1.61;ReadPosRankSum=-0.749;SB=-5.955e-01 GT:AD:DP:GQ:PL 0/1:14,4:18:87:87,0,155 0/0:21,2:23:5:0,5,301 0/1:22,3:25:42:42,0,337 0/1:11,2:14:7:7,0,195 +chr2 31399821 . A T 84.27 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.922;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.4125;MLEAC=6;MLEAF=0.750;MQ=25.22;MQ0=0;MQRankSum=0.922;QD=6.48;ReadPosRankSum=-0.922;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:37,3,0 1/1:0,2:2:6:52,6,0 1/1:9,1:10:3:37,3,0 0/0:3,0:3:3:0,3,38 +chr2 31414807 rs1562022 C G 758.23 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.718;DB;DP=31;Dels=0.00;FS=10.193;HaplotypeScore=0.4954;MLEAC=8;MLEAF=1.00;MQ=32.33;MQ0=0;MQRankSum=2.634;QD=24.46;ReadPosRankSum=0.794;SB=-3.152e+02 GT:AD:DP:GQ:PL 1/1:2,4:6:12:151,12,0 1/1:5,8:13:24:293,24,0 1/1:0,7:7:21:236,21,0 1/1:1,3:5:9:117,9,0 +chr2 31457745 . C T 214.30 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.232;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.4962;MLEAC=5;MLEAF=0.625;MQ=22.68;MQ0=0;MQRankSum=1.514;QD=5.64;ReadPosRankSum=2.077;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:26:76,0,26 0/1:4,5:9:6:132,0,6 0/1:5,1:6:21:21,0,27 1/1:10,1:11:3:27,3,0 +chr2 31600146 rs10187719 T C 645.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.884;DB;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.8776;MLEAC=2;MLEAF=0.250;MQ=37.96;MQ0=0;MQRankSum=-3.760;QD=12.41;ReadPosRankSum=1.828;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,9:29:99:250,0,703 0/1:9,14:23:99:437,0,258 0/0:28,0:28:81:0,81,1094 0/0:18,0:18:48:0,48,645 +chr2 31620593 . T G 220.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.823;DP=156;Dels=0.00;FS=2.277;HaplotypeScore=5.1861;MLEAC=4;MLEAF=0.500;MQ=36.48;MQ0=0;MQRankSum=0.831;QD=1.41;ReadPosRankSum=-0.855;SB=-7.656e-02 GT:AD:DP:GQ:PL 0/1:30,5:35:99:99,0,352 0/1:32,6:38:99:124,0,371 0/1:41,3:44:15:15,0,494 0/1:35,3:39:25:25,0,426 +chr2 32264285 rs141121792 TC T 925.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=8.020;DB;DP=142;FS=0.000;HaplotypeScore=69.3725;MLEAC=3;MLEAF=0.375;MQ=36.80;MQ0=0;MQRankSum=-3.938;QD=8.99;RPA=3,2;RU=C;ReadPosRankSum=1.501;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:25,14:38:99:381,0,623 0/0:37,0:38:99:0,102,1350 0/1:22,14:34:99:415,0,539 0/1:16,8:24:99:182,0,529 +chr2 32706267 . GT G 48.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.528;DP=40;FS=0.000;HaplotypeScore=12.5778;MLEAC=3;MLEAF=0.375;MQ=24.45;MQ0=0;MQRankSum=0.580;QD=1.25;RPA=11,10;RU=T;ReadPosRankSum=-0.264;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:8,3:8:44:44,0,69 0/1:12,1:8:17:17,0,72 0/1:7,5:10:38:38,0,100 0/0:1,0:1:3:0,3,28 +chr2 32707473 . C A 66.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.815;DP=177;Dels=0.01;FS=2.208;HaplotypeScore=4.1002;MLEAC=3;MLEAF=0.375;MQ=24.06;MQ0=0;MQRankSum=1.159;QD=0.50;ReadPosRankSum=-0.788;SB=0.201 GT:AD:DP:GQ:PL 0/1:53,6:59:14:14,0,562 0/1:42,3:45:31:31,0,322 0/0:41,2:43:20:0,20,516 0/1:24,5:29:64:64,0,148 +chr2 32734871 . A T 287.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.570;DP=148;Dels=0.05;FS=36.850;HaplotypeScore=40.6472;MLEAC=4;MLEAF=0.500;MQ=25.49;MQ0=0;MQRankSum=-1.306;QD=1.94;ReadPosRankSum=3.490;SB=-1.302e+01 GT:AD:DP:GQ:PL 0/1:29,6:35:79:79,0,366 0/1:35,8:44:99:159,0,315 0/1:34,3:37:26:26,0,482 0/1:18,7:25:66:66,0,217 +chr2 33746842 rs11676264 G C 43.37 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.572;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=0.500;MQ=31.84;MQ0=0;MQRankSum=-0.572;QD=14.46;ReadPosRankSum=-1.067;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:15:0,15,207 1/1:1,2:3:6:80,6,0 ./. ./. +chr2 33827136 . C A 41.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.600;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=5.1487;MLEAC=3;MLEAF=0.375;MQ=23.82;MQ0=0;MQRankSum=0.000;QD=2.33;ReadPosRankSum=1.835;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:41:45,0,41 0/1:6,1:7:18:18,0,39 0/0:2,0:2:3:0,3,38 0/1:3,1:4:20:20,0,21 +chr2 36744612 . G C 59.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.872;DP=129;Dels=0.01;FS=88.586;HaplotypeScore=6.8901;MLEAC=2;MLEAF=0.250;MQ=32.29;MQ0=0;MQRankSum=-2.817;QD=0.84;ReadPosRankSum=-1.332;SB=-1.749e+00 GT:AD:DP:GQ:PL 0/1:26,3:29:18:18,0,763 0/0:30,2:32:25:0,25,828 0/1:36,6:42:82:82,0,1052 0/0:22,3:25:7:0,7,543 +chr2 36764607 rs113863774 C A 36.25 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.743;DB;DP=70;Dels=0.00;FS=5.116;HaplotypeScore=1.6307;MLEAC=2;MLEAF=0.250;MQ=30.11;MQ0=0;MQRankSum=-1.912;QD=1.58;ReadPosRankSum=-0.388;SB=-5.203e-01 GT:AD:DP:GQ:PL 0/0:26,0:26:54:0,54,648 0/1:8,1:9:13:13,0,161 0/0:21,0:21:42:0,42,503 0/1:10,4:14:64:64,0,226 +chr2 37129970 . T A 61.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.251;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7291;MLEAC=2;MLEAF=0.250;MQ=29.80;MQ0=0;MQRankSum=0.282;QD=1.71;ReadPosRankSum=0.259;SB=6.98 GT:AD:DP:GQ:PL 0/0:27,1:29:1:0,1,338 0/1:20,4:24:73:73,0,306 0/0:23,2:26:1:0,1,259 0/1:10,1:12:26:26,0,56 +chr2 37217701 . A T 390.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.415;DP=65;Dels=0.03;FS=0.000;HaplotypeScore=1.6315;MLEAC=4;MLEAF=0.500;MQ=32.46;MQ0=0;MQRankSum=-0.047;QD=6.01;ReadPosRankSum=2.377;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,6:19:99:158,0,312 0/1:12,2:14:50:50,0,237 0/1:17,4:21:99:105,0,280 0/1:5,4:9:54:120,0,54 +chr2 37306343 rs6743906 G A 1977 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.053;DB;DP=75;Dels=0.01;FS=2.136;HaplotypeScore=2.4988;MLEAC=8;MLEAF=1.00;MQ=32.98;MQ0=0;MQRankSum=3.084;QD=26.36;ReadPosRankSum=1.366;SB=-9.099e+02 GT:AD:DP:GQ:PL 1/1:6,18:24:54:651,54,0 1/1:6,14:20:42:531,42,0 1/1:6,16:22:48:600,48,0 1/1:2,6:8:18:234,18,0 +chr2 37323427 rs56020915 A G 65.02 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.388;DB;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.6561;MLEAC=4;MLEAF=0.667;MQ=13.24;MQ0=0;MQRankSum=-0.458;QD=1.35;ReadPosRankSum=-0.887;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:15:0,15,169 ./. 1/1:26,10:36:3:22,3,0 1/1:7,5:12:9:86,9,0 +chr2 37341974 . T A 207.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.026;DP=159;Dels=0.00;FS=9.151;HaplotypeScore=1.9654;MLEAC=3;MLEAF=0.375;MQ=34.39;MQ0=0;MQRankSum=-0.803;QD=1.82;ReadPosRankSum=2.633;SB=1.18 GT:AD:DP:GQ:PL 0/1:41,3:44:35:35,0,613 0/0:42,3:45:14:0,14,820 0/1:45,6:51:92:92,0,657 0/1:14,5:19:99:124,0,214 +chr2 37468948 . TG T 182.51 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.186;DP=65;FS=0.000;HaplotypeScore=43.4778;MLEAC=4;MLEAF=0.500;MQ=21.46;MQ0=0;MQRankSum=0.501;QD=3.80;ReadPosRankSum=-0.659;SB=0.314 GT:AD:DP:GQ:PL 0/0:10,0:9:13:0,13,130 0/1:15,3:12:99:125,0,104 0/1:11,2:7:29:29,0,99 1/1:4,2:4:6:83,6,0 +chr2 37495568 . C A 57.96 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.019;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.1427;MLEAC=4;MLEAF=0.500;MQ=36.86;MQ0=0;MQRankSum=0.080;QD=0.84;ReadPosRankSum=1.394;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:45:45,0,259 0/1:25,2:27:11:11,0,480 0/1:23,2:25:16:16,0,412 0/1:5,1:6:28:28,0,104 +chr2 37501647 . C G 54.14 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.495;DP=199;Dels=0.00;FS=51.240;HaplotypeScore=7.1229;MLEAC=1;MLEAF=0.125;MQ=37.56;MQ0=0;MQRankSum=-3.063;QD=1.29;ReadPosRankSum=1.933;SB=-7.564e+00 GT:AD:DP:GQ:PL 0/1:36,6:42:89:89,0,991 0/0:47,4:52:0:0,0,1303 0/0:45,3:48:28:0,28,1240 0/0:53,4:57:15:0,15,1406 +chr2 37580111 . G A 42.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.125;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=0.4998;MLEAC=2;MLEAF=0.250;MQ=38.01;MQ0=0;MQRankSum=-1.627;QD=1.34;ReadPosRankSum=0.375;SB=-9.987e-03 GT:AD:DP:GQ:PL 0/1:16,1:17:3:3,0,272 0/0:15,0:15:33:0,33,407 0/0:15,0:15:30:0,30,340 0/1:12,3:15:77:77,0,301 +chr2 37599896 rs139934664 A C 1208.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.259;DB;DP=177;Dels=0.00;FS=1.385;HaplotypeScore=2.4321;MLEAC=3;MLEAF=0.375;MQ=34.96;MQ0=0;MQRankSum=-1.259;QD=9.75;ReadPosRankSum=1.747;SB=-5.020e+02 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,141,1754 0/1:32,17:49:99:441,0,972 0/1:32,20:52:99:634,0,986 0/1:15,7:23:99:177,0,437 +chr2 38044488 rs113788378 TA T 372.20 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.934;DB;DP=125;FS=3.222;HaplotypeScore=10.7541;MLEAC=6;MLEAF=0.750;MQ=18.40;MQ0=0;MQRankSum=0.255;QD=2.98;RPA=8,7;RU=A;ReadPosRankSum=1.783;SB=-9.839e+01;STR GT:AD:DP:GQ:PL 1/1:11,22:7:12:135,12,0 0/1:13,21:9:22:61,0,22 1/1:13,20:14:18:203,18,0 0/1:6,10:6:25:28,0,25 +chr2 38570374 . TC T 138.75 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.000;DP=57;FS=0.000;HaplotypeScore=30.9436;MLEAC=6;MLEAF=0.750;MQ=20.07;MQ0=0;MQRankSum=-1.896;QD=2.43;ReadPosRankSum=-0.948;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:8,0:7:20:20,0,31 0/1:9,3:10:30:86,0,30 1/1:13,4:8:10:62,10,0 1/1:5,2:4:5:24,5,0 +chr2 38893536 . C T 32.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.209;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=6.5569;MLEAC=3;MLEAF=0.375;MQ=25.54;MQ0=0;MQRankSum=1.926;QD=1.43;ReadPosRankSum=-0.761;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:33:33,0,64 0/1:7,1:8:23:23,0,51 0/1:6,1:7:18:18,0,36 0/0:8,0:8:3:0,3,35 +chr2 39224346 . G T 67.45 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.329;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=7.7820;MLEAC=3;MLEAF=0.500;MQ=24.11;MQ0=0;MQRankSum=-2.155;QD=0.88;ReadPosRankSum=1.534;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,4:25:53:53,0,139 0/1:25,1:27:5:5,0,119 0/1:20,4:25:47:47,0,153 ./. +chr2 42047324 rs145756575 G A 30.10 . AC=1;AF=0.250;AN=4;BaseQRankSum=-1.295;DB;DP=103;Dels=0.00;FS=4.709;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.250;MQ=9.87;MQ0=0;MQRankSum=-0.321;QD=1.31;ReadPosRankSum=-0.542;SB=-2.749e+00 GT:AD:DP:GQ:PL 0/1:9,14:23:57:63,0,57 0/0:27,0:27:15:0,15,152 ./. ./. +chr2 42836775 . C G 87.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.997;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.2469;MLEAC=2;MLEAF=0.250;MQ=32.11;MQ0=0;MQRankSum=-0.700;QD=1.50;ReadPosRankSum=-1.847;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:48,1:49:85:0,85,1295 0/1:37,8:45:99:113,0,709 0/0:49,1:50:93:0,93,1313 0/1:12,1:13:15:15,0,214 +chr2 42949950 . T A 42.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.063;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=16.5434;MLEAC=2;MLEAF=0.250;MQ=24.83;MQ0=0;MQRankSum=0.233;QD=1.18;ReadPosRankSum=-0.130;SB=7.98 GT:AD:DP:GQ:PL 0/1:12,1:14:4:4,0,213 0/1:4,2:6:40:40,0,43 0/1:11,3:15:39:39,0,74 0/0:8,0:9:9:0,9,109 +chr2 43458071 rs15397 A G 274.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.019;DB;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=1.2308;MLEAC=1;MLEAF=0.125;MQ=37.27;MQ0=0;MQRankSum=-0.350;QD=5.39;ReadPosRankSum=-0.010;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/0:76,1:77:99:0,171,2660 0/1:39,12:51:99:311,0,1212 0/0:62,0:62:99:0,178,2311 0/0:49,0:49:99:0,135,1726 +chr2 43712322 . A C 235.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.505;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.6637;MLEAC=4;MLEAF=0.500;MQ=27.82;MQ0=0;MQRankSum=0.812;QD=2.18;ReadPosRankSum=-0.129;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,4:26:57:57,0,303 0/1:29,5:34:74:74,0,282 0/1:33,3:36:11:11,0,574 0/1:7,5:12:31:136,0,31 +chr2 43937521 . A G 339.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.134;DP=120;Dels=0.02;FS=20.350;HaplotypeScore=3.8816;MLEAC=4;MLEAF=0.500;MQ=34.18;MQ0=0;MQRankSum=-1.298;QD=2.83;ReadPosRankSum=2.934;SB=-1.185e-02 GT:AD:DP:GQ:PL 0/1:32,9:41:99:212,0,563 0/1:26,5:31:57:57,0,640 0/1:28,4:32:52:52,0,588 0/1:10,4:14:61:61,0,130 +chr2 44053646 . C G 201.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.708;DP=243;Dels=0.00;FS=74.121;HaplotypeScore=10.1487;MLEAC=2;MLEAF=0.250;MQ=38.07;MQ0=0;MQRankSum=-4.210;QD=1.64;ReadPosRankSum=-0.012;SB=-3.979e-01 GT:AD:DP:GQ:PL 0/0:55,4:59:65:0,65,1634 0/1:55,12:67:99:198,0,1431 0/0:58,3:61:60:0,60,1644 0/1:50,5:55:45:45,0,1247 +chr2 44071639 rs4148210 C T 1292.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.770;DB;DP=104;Dels=0.00;FS=11.075;HaplotypeScore=2.1392;MLEAC=4;MLEAF=0.500;MQ=34.51;MQ0=0;MQRankSum=-2.223;QD=14.52;ReadPosRankSum=1.413;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/0:15,0:15:42:0,42,548 1/1:5,24:29:72:917,72,0 0/1:24,10:34:99:274,0,653 0/1:20,6:26:99:150,0,585 +chr2 44071743 rs4148211 A G 1678.57 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.546;DB;DP=104;Dels=0.00;FS=12.661;HaplotypeScore=1.1153;MLEAC=4;MLEAF=0.500;MQ=36.49;MQ0=0;MQRankSum=-4.093;QD=20.72;ReadPosRankSum=0.894;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,1:23:28:0,28,824 1/1:3,22:25:66:830,66,0 0/1:18,17:35:99:559,0,579 0/1:9,12:21:99:338,0,220 +chr2 44527133 . A G 398.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.731;DP=196;Dels=0.00;FS=196.373;HaplotypeScore=4.5774;MLEAC=3;MLEAF=0.375;MQ=34.10;MQ0=0;MQRankSum=-6.437;QD=2.28;ReadPosRankSum=3.009;SB=0.723 GT:AD:DP:GQ:PL 0/1:43,9:52:99:122,0,1316 0/1:54,13:67:99:132,0,1552 0/1:42,13:56:99:188,0,1399 0/0:19,2:21:16:0,16,609 +chr2 44617460 . A G 48.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.021;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.1175;MLEAC=3;MLEAF=0.375;MQ=34.81;MQ0=0;MQRankSum=-1.727;QD=0.51;ReadPosRankSum=-0.366;SB=-2.913e-01 GT:AD:DP:GQ:PL 0/1:39,3:42:10:10,0,849 0/0:33,2:35:26:0,26,974 0/1:31,4:35:45:45,0,682 0/1:16,2:18:36:36,0,167 +chr2 46386298 rs2034360 C T 36.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.727;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.2892;MLEAC=4;MLEAF=1.00;MQ=15.68;MQ0=0;MQRankSum=0.727;QD=6.00;ReadPosRankSum=0.727;SB=-3.001e+01 GT:AD:DP:GQ:PL ./. 1/1:1,2:3:3:36,3,0 1/1:2,1:3:3:33,3,0 ./. +chr2 46602847 . T C 891.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.542;DP=110;Dels=0.00;FS=2.223;HaplotypeScore=3.3277;MLEAC=3;MLEAF=0.375;MQ=33.58;MQ0=0;MQRankSum=-1.699;QD=11.43;ReadPosRankSum=2.040;SB=-1.390e+02 GT:AD:DP:GQ:PL 0/1:10,11:21:99:346,0,235 0/0:32,0:32:90:0,90,1154 0/1:22,11:33:99:299,0,538 0/1:13,11:24:99:290,0,280 +chr2 47249239 rs3814036 A G 417.75 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.101;DB;DP=20;Dels=0.00;FS=12.330;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=26.76;MQ0=0;MQRankSum=3.194;QD=20.89;ReadPosRankSum=-1.898;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,5:5:12:142,12,0 1/1:4,2:6:6:76,6,0 1/1:1,5:6:15:174,15,0 1/1:1,2:3:6:64,6,0 +chr2 47250600 . G T 202.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.036;DP=60;Dels=0.00;FS=96.381;HaplotypeScore=3.8468;MLEAC=3;MLEAF=0.375;MQ=32.17;MQ0=0;MQRankSum=-2.610;QD=4.23;ReadPosRankSum=-1.131;SB=-1.628e+00 GT:AD:DP:GQ:PL 0/1:14,8:22:99:176,0,422 0/1:10,3:13:59:59,0,267 0/0:11,1:12:5:0,5,381 0/1:10,2:13:9:9,0,215 +chr2 47601257 rs4399765 T C 51.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.267;DB;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.0636;MLEAC=1;MLEAF=0.125;MQ=26.89;MQ0=0;MQRankSum=0.481;QD=2.89;ReadPosRankSum=0.304;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:51:0,51,563 0/1:13,5:18:88:88,0,349 0/0:25,0:25:54:0,54,624 0/0:17,0:17:27:0,27,265 +chr2 47690408 rs3771279 A G 135.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.185;DB;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.0736;MLEAC=1;MLEAF=0.125;MQ=32.74;MQ0=0;MQRankSum=-2.664;QD=7.50;ReadPosRankSum=3.012;SB=-1.174e-02 GT:AD:DP:GQ:PL 0/1:11,7:18:99:171,0,346 0/0:19,0:19:54:0,54,652 0/0:16,1:17:42:0,42,525 0/0:7,0:7:15:0,15,179 +chr2 48600533 . T A 160.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.029;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.4135;MLEAC=4;MLEAF=0.500;MQ=25.56;MQ0=0;MQRankSum=2.043;QD=1.62;ReadPosRankSum=-1.139;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,5:30:99:99,0,180 0/1:25,3:28:50:50,0,159 0/1:30,4:34:31:31,0,345 0/1:5,1:7:23:23,0,47 +chr2 48725610 rs3811519 C T 409.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.980;DB;DP=59;Dels=0.02;FS=3.858;HaplotypeScore=2.7633;MLEAC=4;MLEAF=0.500;MQ=32.09;MQ0=0;MQRankSum=-1.320;QD=12.80;ReadPosRankSum=1.375;SB=-4.096e+01 GT:AD:DP:GQ:PL 1/1:1,9:10:24:300,24,0 0/0:25,1:26:63:0,63,790 0/1:12,6:18:99:123,0,282 0/1:3,1:4:29:35,0,29 +chr2 48734576 rs6716341 G A 233.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.901;DB;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=10.3712;MLEAC=4;MLEAF=0.500;MQ=23.36;MQ0=0;MQRankSum=2.949;QD=4.77;ReadPosRankSum=-2.805;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,3:9:19:97,0,19 0/1:11,3:14:43:106,0,43 0/1:13,2:15:43:43,0,74 0/1:7,2:9:30:30,0,41 +chr2 48869625 . A C 235.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.501;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=10.4036;MLEAC=4;MLEAF=0.500;MQ=28.09;MQ0=0;MQRankSum=-0.460;QD=4.62;ReadPosRankSum=-0.620;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,6:15:35:124,0,35 0/1:14,4:18:89:89,0,130 0/1:12,2:14:40:40,0,76 0/1:3,1:4:20:25,0,20 +chr2 48898798 rs3920390 T A 4477.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.219;DB;DP=125;Dels=0.00;FS=11.037;HaplotypeScore=1.4078;MLEAC=8;MLEAF=1.00;MQ=36.55;MQ0=0;MQRankSum=2.219;QD=35.82;ReadPosRankSum=1.378;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,25:27:72:932,72,0 1/1:1,37:38:99:1494,111,0 1/1:3,40:44:80:1511,80,0 1/1:1,15:16:42:540,42,0 +chr2 50149373 . T G 243.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.925;DP=59;Dels=0.02;FS=9.746;HaplotypeScore=5.4494;MLEAC=4;MLEAF=0.500;MQ=27.20;MQ0=0;MQRankSum=-2.908;QD=4.12;ReadPosRankSum=3.020;SB=-2.722e-01 GT:AD:DP:GQ:PL 0/1:10,7:17:61:136,0,61 0/1:13,4:17:61:61,0,184 0/1:8,5:13:8:8,0,148 0/1:7,4:11:80:80,0,84 +chr2 51147104 . G C 64.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.574;DP=60;Dels=0.00;FS=2.448;HaplotypeScore=4.7708;MLEAC=3;MLEAF=0.375;MQ=30.95;MQ0=0;MQRankSum=-0.574;QD=1.51;ReadPosRankSum=0.776;SB=0.064 GT:AD:DP:GQ:PL 0/0:16,0:17:24:0,24,289 0/1:17,3:20:50:50,0,169 0/1:15,3:18:32:32,0,190 1/1:4,1:5:3:27,3,0 +chr2 53897770 . G T 113.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.157;DP=76;Dels=0.01;FS=89.738;HaplotypeScore=1.4565;MLEAC=2;MLEAF=0.250;MQ=37.60;MQ0=0;MQRankSum=-3.851;QD=3.55;ReadPosRankSum=2.497;SB=-6.623e+00 GT:AD:DP:GQ:PL 0/1:19,6:25:99:141,0,582 0/0:19,1:20:48:0,48,651 0/0:21,2:23:3:0,3,556 0/1:5,2:7:12:12,0,159 +chr2 53941745 . T G 223.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.049;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5018;MLEAC=4;MLEAF=0.500;MQ=26.48;MQ0=0;MQRankSum=-1.985;QD=1.71;ReadPosRankSum=3.370;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,6:34:87:87,0,255 0/1:36,6:42:99:101,0,439 0/1:32,5:37:52:52,0,315 0/1:14,3:18:26:26,0,122 +chr2 54128578 . A T 238.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.354;DP=286;Dels=0.01;FS=139.834;HaplotypeScore=3.6626;MLEAC=4;MLEAF=0.500;MQ=35.46;MQ0=0;MQRankSum=-7.159;QD=0.83;ReadPosRankSum=3.686;SB=-1.831e-02 GT:AD:DP:GQ:PL 0/1:64,9:73:99:114,0,1748 0/1:65,9:74:30:30,0,1884 0/1:74,13:87:99:106,0,2235 0/1:45,5:50:31:31,0,942 +chr2 54307051 rs75760430 A G 413.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.423;DB;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.3943;MLEAC=3;MLEAF=0.375;MQ=30.73;MQ0=0;MQRankSum=-2.504;QD=16.55;ReadPosRankSum=0.810;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:21:0,21,274 0/1:3,9:12:48:274,0,48 0/1:4,4:8:82:102,0,82 0/1:2,3:5:63:81,0,63 +chr2 54482294 . C G 299.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.419;DP=134;Dels=0.00;FS=116.335;HaplotypeScore=7.8261;MLEAC=3;MLEAF=0.375;MQ=34.10;MQ0=0;MQRankSum=-1.426;QD=3.18;ReadPosRankSum=3.482;SB=-5.086e-01 GT:AD:DP:GQ:PL 0/0:37,3:40:6:0,6,891 0/1:26,9:35:99:198,0,649 0/1:33,3:36:16:16,0,926 0/1:17,6:23:99:127,0,316 +chr2 54482964 rs843704 C T 1383.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.532;DB;DP=132;Dels=0.00;FS=0.687;HaplotypeScore=5.1439;MLEAC=3;MLEAF=0.375;MQ=33.27;MQ0=0;MQRankSum=-1.933;QD=13.98;ReadPosRankSum=1.041;SB=-6.180e+02 GT:AD:DP:GQ:PL 0/0:33,0:33:87:0,87,1048 0/1:18,14:32:99:380,0,392 0/1:18,19:37:99:570,0,471 0/1:13,17:30:99:477,0,353 +chr2 54587213 . A G 86.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.172;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3880;MLEAC=2;MLEAF=0.250;MQ=27.50;MQ0=0;MQRankSum=-1.746;QD=2.99;ReadPosRankSum=1.193;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:18:0,18,201 0/1:9,3:12:65:65,0,105 0/1:14,3:17:63:63,0,134 0/0:8,1:9:18:0,18,213 +chr2 54826283 . T A 366.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.642;DP=194;Dels=0.00;FS=149.710;HaplotypeScore=6.4094;MLEAC=4;MLEAF=0.500;MQ=30.56;MQ0=0;MQRankSum=-0.616;QD=1.89;ReadPosRankSum=0.154;SB=-1.847e+00 GT:AD:DP:GQ:PL 0/1:41,3:44:2:2,0,1104 0/1:37,6:43:85:85,0,924 0/1:51,10:61:99:159,0,1064 0/1:36,9:46:99:161,0,856 +chr2 54852078 . A G 75.54 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.838;DP=155;Dels=0.00;FS=96.208;HaplotypeScore=4.6913;MLEAC=3;MLEAF=0.375;MQ=36.26;MQ0=0;MQRankSum=-5.058;QD=0.63;ReadPosRankSum=0.889;SB=0.033 GT:AD:DP:GQ:PL 0/0:32,2:35:40:0,40,1049 0/1:34,6:40:61:61,0,901 0/1:44,4:48:9:9,0,1254 0/1:27,4:31:48:48,0,674 +chr2 54855986 . G C 148.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.515;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=8.3863;MLEAC=4;MLEAF=0.500;MQ=28.32;MQ0=0;MQRankSum=-0.893;QD=2.75;ReadPosRankSum=0.343;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:51:51,0,132 0/1:9,3:12:56:56,0,134 0/1:15,2:17:33:33,0,161 0/1:10,2:12:51:51,0,79 +chr2 54873429 . GGCCA G 640.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.670;DP=110;FS=21.973;HaplotypeScore=88.7041;MLEAC=4;MLEAF=0.500;MQ=19.00;MQ0=0;MQRankSum=0.959;QD=5.82;ReadPosRankSum=-2.246;SB=0.046 GT:AD:DP:GQ:PL 0/1:20,5:15:99:241,0,128 0/1:20,2:13:99:208,0,174 0/1:15,4:10:35:35,0,168 0/1:20,7:14:64:208,0,64 +chr2 54874113 . G A 50.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.566;DP=12;Dels=0.00;FS=7.404;HaplotypeScore=0.9639;MLEAC=6;MLEAF=1.00;MQ=15.35;MQ0=0;MQRankSum=2.262;QD=4.19;ReadPosRankSum=0.978;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,1:3:3:32,3,0 1/1:4,1:5:3:24,3,0 1/1:3,1:4:3:29,3,0 +chr2 54874361 . A C 209.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.402;DP=185;Dels=0.00;FS=157.142;HaplotypeScore=14.7935;MLEAC=4;MLEAF=0.500;MQ=33.01;MQ0=0;MQRankSum=-6.664;QD=1.13;ReadPosRankSum=0.121;SB=-1.540e-01 GT:AD:DP:GQ:PL 0/1:34,8:42:68:68,0,1027 0/1:40,9:49:14:14,0,921 0/1:45,8:53:39:39,0,1273 0/1:30,11:41:99:131,0,855 +chr2 54882291 rs17344343 C A 745.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.783;DB;DP=91;Dels=0.00;FS=3.249;HaplotypeScore=1.3268;MLEAC=4;MLEAF=0.500;MQ=35.19;MQ0=0;MQRankSum=-0.346;QD=8.19;ReadPosRankSum=-1.147;SB=-1.940e+02 GT:AD:DP:GQ:PL 0/1:12,6:18:99:196,0,392 0/1:18,6:24:99:163,0,475 0/1:18,9:28:99:215,0,510 0/1:14,7:21:99:214,0,401 +chr2 55186229 rs12623902 T C 780.59 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.678;DB;DP=38;Dels=0.00;FS=18.194;HaplotypeScore=0.3943;MLEAC=5;MLEAF=0.625;MQ=33.91;MQ0=0;MQRankSum=1.550;QD=20.54;ReadPosRankSum=1.613;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,9:11:27:352,27,0 0/1:6,4:10:99:116,0,142 0/1:3,4:7:76:140,0,76 0/1:4,6:10:37:218,0,37 +chr2 55186394 rs17346629 A C 2662.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=5.282;DB;DP=174;Dels=0.00;FS=1.294;HaplotypeScore=4.3980;MLEAC=5;MLEAF=0.625;MQ=37.38;MQ0=0;MQRankSum=-2.669;QD=15.30;ReadPosRankSum=2.166;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:3,33:36:66:1241,66,0 0/1:25,19:45:99:622,0,865 0/1:39,13:52:99:355,0,1209 0/1:25,16:41:99:490,0,652 +chr2 55461979 . CA C 118.03 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.369;DP=42;FS=0.000;HaplotypeScore=15.9986;MLEAC=3;MLEAF=0.375;MQ=18.43;MQ0=0;MQRankSum=0.791;QD=4.54;ReadPosRankSum=-1.950;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:10,2:6:73:73,0,154 0/0:15,1:5:15:0,15,208 0/1:9,3:7:75:75,0,111 1/1:2,0:1:3:23,3,0 +chr2 55471212 . T G 75.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.254;DP=99;Dels=0.00;FS=45.260;HaplotypeScore=3.3538;MLEAC=4;MLEAF=0.500;MQ=22.97;MQ0=0;MQRankSum=1.614;QD=0.76;ReadPosRankSum=-1.827;SB=-4.563e-02 GT:AD:DP:GQ:PL 0/1:25,3:28:26:26,0,137 0/1:24,2:27:41:41,0,96 0/1:33,3:36:23:23,0,411 0/1:7,1:8:23:28,0,23 +chr2 55570769 . A T 36.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.762;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.3383;MLEAC=1;MLEAF=0.125;MQ=27.03;MQ0=0;MQRankSum=-1.695;QD=1.50;ReadPosRankSum=-0.603;SB=-1.868e+00 GT:AD:DP:GQ:PL 0/0:16,3:19:2:0,2,273 0/0:19,0:19:39:0,39,368 0/1:19,5:24:71:71,0,230 0/0:2,1:3:6:0,6,85 +chr2 55844342 . A C 147.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.048;DP=66;Dels=0.05;FS=10.473;HaplotypeScore=18.9205;MLEAC=3;MLEAF=0.375;MQ=18.64;MQ0=0;MQRankSum=-1.140;QD=2.85;ReadPosRankSum=2.355;SB=-1.005e+01 GT:AD:DP:GQ:PL 0/0:9,3:13:6:0,6,66 0/1:15,5:20:31:91,0,31 0/1:9,5:14:42:42,0,54 0/1:10,6:16:18:57,0,18 +chr2 55867938 rs34679603 A G 372.32 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.820;DB;DP=22;Dels=0.00;FS=16.435;HaplotypeScore=0.6651;MLEAC=7;MLEAF=0.875;MQ=25.85;MQ0=0;MQRankSum=1.762;QD=16.92;ReadPosRankSum=-0.564;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,5:8:77:135,0,77 1/1:2,7:9:18:207,18,0 1/1:0,2:2:3:37,3,0 1/1:2,1:3:3:35,3,0 +chr2 55873385 rs7584120 C G 316.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.051;DB;DP=91;Dels=0.00;FS=9.373;HaplotypeScore=0.2416;MLEAC=3;MLEAF=0.375;MQ=34.50;MQ0=0;MQRankSum=-1.163;QD=4.87;ReadPosRankSum=1.309;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,7:29:99:191,0,573 0/0:26,0:26:72:0,72,880 0/1:21,7:28:99:149,0,754 0/1:7,1:8:20:20,0,152 +chr2 55889062 rs782604 G A 2021.14 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.171;DB;DP=77;Dels=0.01;FS=14.914;HaplotypeScore=4.1873;MLEAC=8;MLEAF=1.00;MQ=31.51;MQ0=0;MQRankSum=1.773;QD=26.25;ReadPosRankSum=1.614;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,14:18:12:476,12,0 1/1:3,23:26:63:769,63,0 1/1:7,19:26:57:675,57,0 1/1:2,4:6:12:140,12,0 +chr2 55906878 . T C 31.41 . AC=1;AF=0.167;AN=6;BaseQRankSum=0.122;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.6594;MLEAC=1;MLEAF=0.167;MQ=17.15;MQ0=0;MQRankSum=2.207;QD=1.16;ReadPosRankSum=0.434;SB=-2.756e+01 GT:AD:DP:GQ:PL 0/0:26,0:26:15:0,15,191 0/0:27,0:27:12:0,12,142 0/1:25,2:27:23:66,0,23 ./. +chr2 57276048 rs56282904 A G 165.29 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.220;DB;DP=52;Dels=0.00;FS=26.992;HaplotypeScore=0.2458;MLEAC=1;MLEAF=0.125;MQ=31.89;MQ0=0;MQRankSum=-1.204;QD=11.02;ReadPosRankSum=1.981;SB=-5.773e+01 GT:AD:DP:GQ:PL 0/1:7,8:15:57:201,0,57 0/0:23,0:23:54:0,54,647 0/0:12,0:12:33:0,33,424 0/0:2,0:2:6:0,6,66 +chr2 60995888 . C A 65.27 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.950;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.1693;MLEAC=3;MLEAF=0.375;MQ=23.35;MQ0=0;MQRankSum=-1.775;QD=2.51;ReadPosRankSum=1.858;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:38:38,0,52 0/1:8,4:12:37:66,0,37 0/0:8,0:8:3:0,3,32 0/0:3,1:4:3:0,3,25 +chr2 61021889 . A C 127.91 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.641;DP=143;Dels=0.00;FS=101.425;HaplotypeScore=2.6132;MLEAC=4;MLEAF=0.500;MQ=32.53;MQ0=0;MQRankSum=0.122;QD=0.89;ReadPosRankSum=-0.352;SB=-3.579e+00 GT:AD:DP:GQ:PL 0/1:36,3:39:1:1,0,761 0/1:35,4:39:49:49,0,979 0/1:43,8:51:99:102,0,1045 0/1:12,2:14:16:16,0,312 +chr2 61175250 . A T 513.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.426;DP=219;Dels=0.00;FS=187.178;HaplotypeScore=16.6715;MLEAC=4;MLEAF=0.500;MQ=32.09;MQ0=0;MQRankSum=-1.705;QD=2.35;ReadPosRankSum=1.813;SB=-2.618e-02 GT:AD:DP:GQ:PL 0/1:43,5:48:24:24,0,932 0/1:47,10:57:99:213,0,1084 0/1:63,9:72:83:83,0,1575 0/1:31,11:42:99:236,0,517 +chr2 61245248 . A G 149.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.492;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.4920;MLEAC=4;MLEAF=0.500;MQ=29.50;MQ0=0;MQRankSum=-1.522;QD=1.46;ReadPosRankSum=0.796;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,2:20:56:56,0,71 0/1:26,3:29:47:47,0,206 0/1:23,4:27:79:79,0,162 0/1:25,2:27:10:10,0,345 +chr2 61417780 . T G 368.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.994;DP=72;Dels=0.00;FS=45.278;HaplotypeScore=0.6504;MLEAC=3;MLEAF=0.375;MQ=33.73;MQ0=0;MQRankSum=0.586;QD=5.42;ReadPosRankSum=-0.710;SB=1.43 GT:AD:DP:GQ:PL 0/1:11,4:15:99:111,0,141 0/1:18,6:24:99:172,0,364 0/1:24,5:29:99:128,0,392 0/0:4,0:4:9:0,9,93 +chr2 61647901 rs778155 A G 75 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.245;DB;DP=84;Dels=0.00;FS=2.391;HaplotypeScore=0.2474;MLEAC=1;MLEAF=0.125;MQ=35.23;MQ0=0;MQRankSum=0.138;QD=4.69;ReadPosRankSum=2.477;SB=-2.042e-03 GT:AD:DP:GQ:PL 0/1:12,4:16:99:111,0,449 0/0:26,0:27:75:0,75,971 0/0:33,0:33:93:0,93,1109 0/0:8,0:8:21:0,21,242 +chr2 61717847 . T G 321.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.990;DP=139;Dels=0.00;FS=207.412;HaplotypeScore=3.6593;MLEAC=4;MLEAF=0.500;MQ=34.60;MQ0=0;MQRankSum=-6.143;QD=2.31;ReadPosRankSum=1.741;SB=2.59 GT:AD:DP:GQ:PL 0/1:28,8:36:99:142,0,859 0/1:29,9:38:99:133,0,856 0/1:36,7:43:83:83,0,1117 0/1:19,3:22:5:5,0,561 +chr2 61722519 rs74392163 G GA 200.22 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.158;DB;DP=35;FS=0.000;HaplotypeScore=10.1360;MLEAC=6;MLEAF=0.750;MQ=26.43;MQ0=0;MQRankSum=-0.893;QD=5.72;RPA=5,6;RU=A;ReadPosRankSum=1.313;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:8,1:9:16:16,0,169 0/1:8,2:6:39:59,0,39 1/1:10,3:11:12:142,12,0 1/1:2,1:1:3:36,3,0 +chr2 63282842 . A C 70.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.072;DP=59;Dels=0.02;FS=36.276;HaplotypeScore=3.0719;MLEAC=3;MLEAF=0.375;MQ=24.32;MQ0=0;MQRankSum=0.807;QD=1.49;ReadPosRankSum=0.781;SB=-1.382e+00 GT:AD:DP:GQ:PL 0/1:10,3:13:67:67,0,146 0/0:11,0:11:15:0,15,133 0/1:15,2:17:14:14,0,340 0/1:14,3:17:32:32,0,137 +chr2 63609017 rs2138796 A T 3143.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.707;DB;DP=124;Dels=0.01;FS=23.661;HaplotypeScore=2.2047;MLEAC=7;MLEAF=0.875;MQ=32.04;MQ0=0;MQRankSum=-2.787;QD=25.35;ReadPosRankSum=2.522;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:3,25:28:75:882,75,0 0/1:19,18:37:99:573,0,544 1/1:1,33:34:96:1135,96,0 1/1:5,19:24:54:598,54,0 +chr2 63664989 . T G 252.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.051;DP=148;Dels=0.00;FS=152.901;HaplotypeScore=4.8469;MLEAC=3;MLEAF=0.375;MQ=30.83;MQ0=0;MQRankSum=0.249;QD=1.84;ReadPosRankSum=0.853;SB=4.14 GT:AD:DP:GQ:PL 0/1:31,7:39:97:97,0,770 0/1:39,7:47:59:59,0,904 0/1:41,10:51:99:139,0,958 0/0:11,0:11:12:0,12,107 +chr2 67631129 rs35777125 G A 299.14 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.907;DB;DP=100;Dels=0.01;FS=7.316;HaplotypeScore=0.7414;MLEAC=1;MLEAF=0.125;MQ=40.02;MQ0=0;MQRankSum=-0.135;QD=10.32;ReadPosRankSum=0.475;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/0:29,0:29:84:0,84,1099 0/1:18,10:28:99:335,0,601 0/0:38,0:38:99:0,111,1493 0/0:4,0:4:9:0,9,124 +chr2 67631395 rs10496153 G A 291.14 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.203;DB;DP=110;Dels=0.00;FS=3.004;HaplotypeScore=0.2416;MLEAC=1;MLEAF=0.125;MQ=38.08;MQ0=0;MQRankSum=-1.788;QD=8.32;ReadPosRankSum=0.122;SB=-1.519e+02 GT:AD:DP:GQ:PL 0/0:34,0:34:96:0,96,1253 0/1:24,11:35:99:327,0,837 0/0:36,0:36:99:0,105,1400 0/0:5,0:5:9:0,9,127 +chr2 68018119 . G A 50.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=4;MLEAF=1.00;MQ=21.65;MQ0=0;MQRankSum=1.026;QD=10.00;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,1:4:3:42,3,0 1/1:0,1:1:3:41,3,0 ./. +chr2 68765266 . C G 82.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.033;DP=138;Dels=0.02;FS=65.297;HaplotypeScore=32.4824;MLEAC=3;MLEAF=0.375;MQ=23.02;MQ0=0;MQRankSum=-1.094;QD=0.68;ReadPosRankSum=3.524;SB=3.57 GT:AD:DP:GQ:PL 0/1:32,3:35:18:18,0,402 0/1:37,5:42:9:9,0,514 0/1:34,8:42:98:98,0,407 0/0:16,0:16:24:0,24,243 +chr2 69009513 . G GGA 768.52 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.158;DP=78;FS=0.000;HaplotypeScore=51.6197;MLEAC=5;MLEAF=0.625;MQ=21.63;MQ0=0;MQRankSum=-1.282;QD=9.85;RPA=1,2;RU=GA;ReadPosRankSum=-0.373;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:14,5:11:0:257,0,0 0/1:17,3:13:15:183,0,15 0/1:13,4:9:10:259,0,10 1/1:8,1:7:5:119,5,0 +chr2 69040500 rs2280310 G A 2508.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.240;DB;DP=174;Dels=0.01;FS=4.708;HaplotypeScore=3.7171;MLEAC=4;MLEAF=0.500;MQ=35.54;MQ0=0;MQRankSum=-2.211;QD=19.60;ReadPosRankSum=2.201;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:99:1461,114,0 0/0:44,0:45:99:0,123,1594 0/1:31,21:52:99:640,0,921 0/1:19,17:36:99:456,0,508 +chr2 69093422 . C T 45.12 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.789;DP=127;Dels=0.00;FS=52.707;HaplotypeScore=5.9082;MLEAC=2;MLEAF=0.250;MQ=33.09;MQ0=0;MQRankSum=-2.904;QD=0.69;ReadPosRankSum=1.305;SB=-1.964e+00 GT:AD:DP:GQ:PL 0/0:29,0:29:66:0,66,820 0/0:31,2:33:7:0,7,719 0/1:33,4:37:27:27,0,607 0/1:23,5:28:59:59,0,375 +chr2 69204671 rs9808077 A T 468.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.944;DB;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.4047;MLEAC=1;MLEAF=0.125;MQ=36.39;MQ0=0;MQRankSum=-2.155;QD=13.03;ReadPosRankSum=0.233;SB=-1.680e+02 GT:AD:DP:GQ:PL 0/1:20,16:36:99:505,0,460 0/0:52,0:52:99:0,144,1810 0/0:61,0:61:99:0,135,1711 0/0:12,0:12:30:0,30,356 +chr2 69555475 . C T 135.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.163;DP=213;Dels=0.01;FS=62.242;HaplotypeScore=6.7892;MLEAC=2;MLEAF=0.250;MQ=33.54;MQ0=0;MQRankSum=-2.209;QD=1.39;ReadPosRankSum=1.306;SB=-3.251e+00 GT:AD:DP:GQ:PL 0/0:53,2:55:42:0,42,1044 0/1:55,4:59:7:7,0,1134 0/0:56,3:59:45:0,45,1368 0/1:30,8:38:99:168,0,545 +chr2 69732778 . G C 87.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.125;DP=265;Dels=0.00;FS=60.147;HaplotypeScore=12.9542;MLEAC=2;MLEAF=0.250;MQ=33.88;MQ0=0;MQRankSum=-2.016;QD=0.73;ReadPosRankSum=2.098;SB=-9.900e-01 GT:AD:DP:GQ:PL 0/0:64,3:67:25:0,25,1182 0/1:61,6:67:54:54,0,999 0/0:73,4:77:42:0,42,1425 0/1:48,5:53:75:75,0,817 +chr2 69746037 . C A 44.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.722;DP=74;Dels=0.00;FS=4.858;HaplotypeScore=1.8619;MLEAC=2;MLEAF=0.250;MQ=36.98;MQ0=0;MQRankSum=-1.192;QD=0.97;ReadPosRankSum=-2.312;SB=-9.797e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:42:0,42,524 0/0:13,0:13:36:0,36,435 0/1:21,4:25:67:67,0,631 0/1:19,2:21:19:19,0,483 +chr2 70064649 . A T 222.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.917;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.1145;MLEAC=4;MLEAF=0.500;MQ=27.33;MQ0=0;MQRankSum=-2.050;QD=5.18;ReadPosRankSum=0.950;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:64:64,0,116 0/1:9,4:13:71:71,0,218 0/1:7,4:11:83:83,0,93 0/1:4,3:7:25:47,0,25 +chr2 70488573 . A G 49.44 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.035;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=14.2927;MLEAC=3;MLEAF=0.375;MQ=23.25;MQ0=0;MQRankSum=-0.330;QD=1.27;ReadPosRankSum=-0.110;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,3:17:52:52,0,64 0/1:13,3:16:10:10,0,98 0/0:14,0:14:18:0,18,155 1/1:5,1:6:3:31,3,0 +chr2 71036189 rs149426278 CA C 960.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.363;DB;DP=121;FS=0.000;HaplotypeScore=5.9947;MLEAC=3;MLEAF=0.375;MQ=33.53;MQ0=0;MQRankSum=-0.261;QD=11.72;ReadPosRankSum=0.225;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:16,7:21:99:258,0,495 0/0:36,0:36:99:0,105,1591 0/1:19,12:31:99:458,0,685 0/1:17,9:24:99:297,0,553 +chr2 71038565 rs17656058 C T 299.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.516;DB;DP=85;Dels=0.00;FS=4.376;HaplotypeScore=0.9456;MLEAC=3;MLEAF=0.375;MQ=25.79;MQ0=0;MQRankSum=-1.476;QD=5.17;ReadPosRankSum=0.475;SB=-1.131e+02 GT:AD:DP:GQ:PL 0/1:14,9:23:99:157,0,233 0/0:27,0:27:51:0,51,595 0/1:13,11:24:99:154,0,263 0/1:8,3:11:32:32,0,143 +chr2 71300516 rs17616553 T C 1023.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.085;DB;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=2.2973;MLEAC=1;MLEAF=0.125;MQ=38.68;MQ0=0;MQRankSum=-2.662;QD=14.03;ReadPosRankSum=0.344;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:41,32:73:99:1060,0,1445 0/0:89,0:89:99:0,259,3493 0/0:86,0:86:99:0,256,3411 0/0:68,0:68:99:0,196,2517 +chr2 71351369 . G A 85.63 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.781;DP=65;Dels=0.00;FS=17.633;HaplotypeScore=13.1797;MLEAC=3;MLEAF=0.375;MQ=23.09;MQ0=0;MQRankSum=1.444;QD=1.50;ReadPosRankSum=-1.054;SB=-5.883e-01 GT:AD:DP:GQ:PL 0/1:15,2:17:8:8,0,115 0/1:15,2:20:32:32,0,117 0/1:13,5:20:86:86,0,106 0/0:8,0:8:3:0,3,23 +chr2 71351487 rs11541017 G A 5319.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.202;DB;DP=221;Dels=0.00;FS=2.838;HaplotypeScore=1.7930;MLEAC=6;MLEAF=0.750;MQ=33.03;MQ0=0;MQRankSum=-3.125;QD=24.07;ReadPosRankSum=1.677;SB=-2.041e+03 GT:AD:DP:GQ:PL 0/1:29,34:63:99:1033,0,824 0/1:23,36:59:99:1078,0,575 1/1:0,51:51:99:1805,150,0 1/1:4,44:48:99:1403,120,0 +chr2 71360144 rs10199088 A C 262.38 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.974;DB;DP=136;Dels=0.00;FS=2.604;HaplotypeScore=1.1788;MLEAC=1;MLEAF=0.125;MQ=16.24;MQ0=0;MQRankSum=3.088;QD=6.73;ReadPosRankSum=0.859;SB=-9.168e+01 GT:AD:DP:GQ:PL 0/1:25,14:39:99:298,0,135 0/0:39,0:39:12:0,12,114 0/0:44,0:44:27:0,27,278 0/0:14,0:14:6:0,6,49 +chr2 71576228 . A T 228.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.607;DP=163;Dels=0.01;FS=85.055;HaplotypeScore=35.2481;MLEAC=3;MLEAF=0.375;MQ=27.23;MQ0=0;MQRankSum=2.193;QD=1.76;ReadPosRankSum=-0.012;SB=-9.131e-01 GT:AD:DP:GQ:PL 0/1:32,3:35:52:52,0,325 0/1:36,8:45:99:195,0,508 0/1:43,5:48:25:25,0,644 0/0:33,0:33:24:0,24,264 +chr2 71591382 . G C 34.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.829;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4318;MLEAC=4;MLEAF=0.500;MQ=33.64;MQ0=0;MQRankSum=-1.207;QD=0.40;ReadPosRankSum=-0.934;SB=-9.521e-01 GT:AD:DP:GQ:PL 0/1:21,1:22:2:2,0,372 0/1:27,2:29:16:16,0,448 0/1:22,2:24:16:16,0,435 0/1:9,3:12:41:41,0,131 +chr2 71730476 . T G 307.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.057;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=1.9393;MLEAC=3;MLEAF=0.375;MQ=35.31;MQ0=0;MQRankSum=-0.691;QD=2.61;ReadPosRankSum=-1.347;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:37,6:43:91:91,0,1092 0/1:30,6:36:99:119,0,751 0/0:37,1:38:63:0,63,1106 0/1:30,7:37:99:141,0,668 +chr2 71755380 rs4852800 A G 187.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.172;DB;DP=44;Dels=0.00;FS=2.637;HaplotypeScore=2.9142;MLEAC=3;MLEAF=0.375;MQ=28.08;MQ0=0;MQRankSum=-0.194;QD=6.06;ReadPosRankSum=-0.018;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:33:0,33,419 0/1:7,2:9:20:20,0,74 0/1:6,4:11:65:106,0,65 0/1:7,4:11:51:105,0,51 +chr2 71816602 rs3811611 G C 663.82 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.008;DB;DP=38;Dels=0.00;FS=5.740;HaplotypeScore=1.0276;MLEAC=7;MLEAF=0.875;MQ=29.14;MQ0=0;MQRankSum=0.680;QD=17.47;ReadPosRankSum=0.352;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:60:60,0,148 1/1:3,5:9:12:123,12,0 1/1:2,10:12:27:342,27,0 1/1:3,5:8:15:183,15,0 +chr2 72362048 . G C 76.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.195;DP=99;Dels=0.00;FS=4.561;HaplotypeScore=2.9173;MLEAC=2;MLEAF=0.250;MQ=31.05;MQ0=0;MQRankSum=-1.289;QD=1.55;ReadPosRankSum=-3.380;SB=-1.743e-01 GT:AD:DP:GQ:PL 0/1:20,2:23:15:15,0,512 0/1:21,5:26:99:102,0,487 0/0:20,2:23:15:0,15,505 0/0:27,0:27:54:0,54,597 +chr2 73151570 . T C 33.22 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.358;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.6544;MLEAC=2;MLEAF=0.333;MQ=22.47;MQ0=0;MQRankSum=-1.231;QD=11.07;ReadPosRankSum=0.358;SB=2.03 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,39 ./. 1/1:0,3:3:6:70,6,0 0/0:1,0:1:3:0,3,31 +chr2 73307162 . G A 60.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.973;DP=46;Dels=0.00;FS=2.466;HaplotypeScore=0.8283;MLEAC=1;MLEAF=0.125;MQ=29.34;MQ0=0;MQRankSum=-1.014;QD=3.75;ReadPosRankSum=0.830;SB=0.469 GT:AD:DP:GQ:PL 0/0:7,0:7:18:0,18,218 0/0:14,1:15:13:0,13,347 0/0:8,0:8:24:0,24,273 0/1:11,5:16:96:96,0,117 +chr2 73476913 . T C 67.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.732;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.5856;MLEAC=3;MLEAF=0.375;MQ=36.68;MQ0=0;MQRankSum=-4.778;QD=0.57;ReadPosRankSum=-3.215;SB=1.19 GT:AD:DP:GQ:PL 0/1:34,4:38:30:30,0,1065 0/1:35,4:39:39:39,0,1052 0/1:37,5:42:40:40,0,1063 0/0:36,3:39:4:0,4,1033 +chr2 73477351 rs909065 T C 251.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.068;DB;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.7207;MLEAC=3;MLEAF=0.375;MQ=29.55;MQ0=0;MQRankSum=-1.288;QD=9.33;ReadPosRankSum=-0.773;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,5:10:99:133,0,112 0/0:12,0:12:24:0,24,283 0/1:8,4:12:99:117,0,152 0/1:3,2:5:45:45,0,67 +chr2 74438406 rs183389698 A G 485.37 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.094;DB;DP=64;Dels=0.00;FS=17.186;HaplotypeScore=5.0965;MLEAC=3;MLEAF=0.375;MQ=26.57;MQ0=0;MQRankSum=3.485;QD=8.09;ReadPosRankSum=-0.522;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,9:24:28:238,0,28 0/1:10,6:17:6:153,0,6 0/1:13,6:19:11:135,0,11 0/0:4,0:4:3:0,3,23 +chr2 74659679 . G C 40 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.504;DP=105;Dels=0.03;FS=94.944;HaplotypeScore=20.3522;MLEAC=2;MLEAF=0.250;MQ=28.99;MQ0=0;MQRankSum=-3.994;QD=0.73;ReadPosRankSum=1.306;SB=-1.169e+00 GT:AD:DP:GQ:PL 0/1:20,7:28:45:45,0,430 0/0:22,2:24:9:0,9,371 0/1:20,6:26:36:36,0,454 0/0:18,4:23:15:0,15,483 +chr2 74708888 . A C 97.23 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.776;DP=72;Dels=0.00;FS=5.136;HaplotypeScore=4.8120;MLEAC=1;MLEAF=0.125;MQ=27.89;MQ0=0;MQRankSum=-0.057;QD=4.63;ReadPosRankSum=0.890;SB=0.686 GT:AD:DP:GQ:PL 0/0:17,0:17:12:0,12,128 0/0:13,0:13:9:0,9,78 0/0:21,0:21:24:0,24,267 0/1:15,6:21:73:133,0,73 +chr2 74710278 . A T 38.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.809;DP=138;Dels=0.00;FS=125.409;HaplotypeScore=3.1219;MLEAC=1;MLEAF=0.125;MQ=37.71;MQ0=0;MQRankSum=-3.845;QD=1.09;ReadPosRankSum=0.614;SB=-8.841e+00 GT:AD:DP:GQ:PL 0/1:29,6:35:74:74,0,986 0/0:27,2:29:35:0,35,915 0/0:40,2:42:52:0,52,1363 0/0:30,2:32:15:0,15,932 +chr2 75893160 . T G 191.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.311;DP=124;Dels=0.00;FS=38.263;HaplotypeScore=0.4990;MLEAC=4;MLEAF=0.500;MQ=35.40;MQ0=0;MQRankSum=1.977;QD=1.55;ReadPosRankSum=2.813;SB=-1.591e-02 GT:AD:DP:GQ:PL 0/1:25,6:31:99:134,0,724 0/1:37,4:41:35:35,0,967 0/1:38,4:42:35:35,0,857 0/1:9,1:10:30:30,0,90 +chr2 75919295 rs186568138 A G 122.83 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.099;DB;DP=50;Dels=0.00;FS=7.605;HaplotypeScore=8.8371;MLEAC=5;MLEAF=0.625;MQ=12.71;MQ0=0;MQRankSum=4.005;QD=2.46;ReadPosRankSum=-0.694;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:15:44,0,15 0/1:10,1:11:13:13,0,65 1/1:12,3:15:9:84,9,0 0/1:12,1:13:18:26,0,18 +chr2 75923413 rs7560262 T C 2477.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.558;DB;DP=94;Dels=0.00;FS=1.684;HaplotypeScore=1.4953;MLEAC=7;MLEAF=0.875;MQ=33.64;MQ0=0;MQRankSum=-0.354;QD=26.36;ReadPosRankSum=-0.260;SB=-2.520e+02 GT:AD:DP:GQ:PL 0/1:19,9:28:99:221,0,587 1/1:2,26:28:78:945,78,0 1/1:2,24:26:72:885,72,0 1/1:0,12:12:36:471,36,0 +chr2 75933830 rs6728499 T A 1827.17 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.923;DB;DP=70;Dels=0.00;FS=7.597;HaplotypeScore=0.4997;MLEAC=6;MLEAF=0.750;MQ=32.37;MQ0=0;MQRankSum=-1.132;QD=26.10;ReadPosRankSum=1.021;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:99:169,0,306 1/1:0,22:23:57:681,57,0 1/1:1,22:23:66:785,66,0 0/1:1,7:8:6:237,0,6 +chr2 79384875 . T A 42.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.723;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.2154;MLEAC=2;MLEAF=0.250;MQ=36.87;MQ0=0;MQRankSum=-2.130;QD=0.97;ReadPosRankSum=-2.130;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:51:51,0,514 0/1:20,3:23:33:33,0,525 0/0:26,2:28:17:0,17,747 0/0:24,1:25:25:0,25,576 +chr2 80809027 rs17019401 C G 333.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.408;DB;DP=65;Dels=0.00;FS=2.421;HaplotypeScore=1.9704;MLEAC=3;MLEAF=0.375;MQ=35.88;MQ0=0;MQRankSum=-1.116;QD=6.95;ReadPosRankSum=1.334;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,0:17:48:0,48,665 0/1:14,5:19:99:165,0,240 0/1:9,4:14:99:130,0,266 0/1:11,3:15:82:82,0,231 +chr2 84868982 . G A 83.47 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.993;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=10.4848;MLEAC=3;MLEAF=0.500;MQ=21.59;MQ0=0;MQRankSum=-0.209;QD=2.78;ReadPosRankSum=-0.209;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:14:14,0,44 0/1:4,3:7:20:56,0,20 0/1:8,4:12:20:52,0,20 ./. +chr2 84880695 rs12992282 G A 1393.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.353;DB;DP=184;Dels=0.00;FS=2.173;HaplotypeScore=4.0036;MLEAC=3;MLEAF=0.375;MQ=34.79;MQ0=0;MQRankSum=-4.452;QD=10.25;ReadPosRankSum=0.849;SB=-4.610e+02 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,135,1773 0/1:31,29:60:99:845,0,968 0/1:36,17:54:99:394,0,1145 0/1:14,8:22:99:198,0,345 +chr2 85489251 . C A 150.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.830;DP=210;Dels=0.00;FS=40.358;HaplotypeScore=6.8713;MLEAC=4;MLEAF=0.500;MQ=20.32;MQ0=0;MQRankSum=3.197;QD=0.72;ReadPosRankSum=2.388;SB=0.100 GT:AD:DP:GQ:PL 0/1:51,4:55:69:69,0,286 0/1:59,2:61:20:20,0,451 0/1:62,4:66:74:74,0,318 0/1:26,2:28:30:30,0,305 +chr2 85526097 . A G 31.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.737;DP=57;Dels=0.00;FS=2.494;HaplotypeScore=1.7163;MLEAC=2;MLEAF=0.250;MQ=34.67;MQ0=0;MQRankSum=-1.454;QD=0.96;ReadPosRankSum=-0.259;SB=1.30 GT:AD:DP:GQ:PL 0/1:13,1:14:6:6,0,277 0/0:18,1:19:7:0,7,275 0/1:16,3:19:63:63,0,237 0/0:5,0:5:3:0,3,44 +chr2 85552186 rs7572750 C A 236.28 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.982;DB;DP=43;Dels=0.00;FS=18.837;HaplotypeScore=1.8456;MLEAC=7;MLEAF=0.875;MQ=18.09;MQ0=0;MQRankSum=4.322;QD=5.49;ReadPosRankSum=-1.717;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,1:5:3:41,3,0 0/1:17,1:19:17:36,0,17 1/1:3,3:6:9:115,9,0 1/1:9,4:13:6:86,6,0 +chr2 85573033 rs908302 G A 2397.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.650;DB;DP=97;Dels=0.02;FS=1.370;HaplotypeScore=2.2104;MLEAC=7;MLEAF=0.875;MQ=31.94;MQ0=0;MQRankSum=-1.318;QD=24.72;ReadPosRankSum=2.686;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:72:840,72,0 0/1:16,13:29:99:301,0,401 1/1:1,24:25:72:887,72,0 1/1:2,14:16:36:414,36,0 +chr2 85780603 . T C 593.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.265;DP=115;Dels=0.03;FS=38.349;HaplotypeScore=27.5874;MLEAC=4;MLEAF=0.500;MQ=25.93;MQ0=0;MQRankSum=2.050;QD=5.16;ReadPosRankSum=3.067;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,7:29:99:142,0,187 0/1:22,8:30:99:174,0,172 0/1:17,6:23:99:124,0,129 0/1:22,7:29:58:196,0,58 +chr2 85783317 . C T 41 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.468;DP=130;Dels=0.00;FS=4.783;HaplotypeScore=1.2976;MLEAC=1;MLEAF=0.125;MQ=35.93;MQ0=0;MQRankSum=-0.559;QD=1.14;ReadPosRankSum=-1.139;SB=0.226 GT:AD:DP:GQ:PL 0/1:32,4:36:77:77,0,554 0/0:27,1:28:39:0,39,708 0/0:36,0:36:84:0,84,963 0/0:29,1:30:22:0,22,643 +chr2 86000096 . C T 98.31 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.386;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.2343;MLEAC=4;MLEAF=0.500;MQ=32.90;MQ0=0;MQRankSum=-3.051;QD=0.90;ReadPosRankSum=1.363;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,3:33:18:18,0,495 0/1:24,3:28:38:38,0,494 0/1:24,2:26:7:7,0,469 0/1:18,4:22:77:77,0,411 +chr2 86302197 . G A 51.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.620;DP=46;Dels=0.00;FS=24.402;HaplotypeScore=0.9399;MLEAC=3;MLEAF=0.375;MQ=29.80;MQ0=0;MQRankSum=-1.944;QD=1.40;ReadPosRankSum=-0.727;SB=-1.466e+00 GT:AD:DP:GQ:PL 0/0:9,0:9:18:0,18,201 0/1:9,2:11:2:2,0,237 0/1:10,2:12:52:52,0,207 0/1:10,4:14:38:38,0,252 +chr2 87042825 rs35555413 T C 2279.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.743;DB;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=3;MLEAF=0.375;MQ=36.75;MQ0=0;MQRankSum=-3.408;QD=12.88;ReadPosRankSum=-0.748;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/0:56,1:58:92:0,92,1675 0/1:38,32:70:99:998,0,733 0/1:34,29:64:99:880,0,812 0/1:26,16:42:99:445,0,731 +chr2 87240308 . C T 36.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.166;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.2474;MLEAC=4;MLEAF=0.500;MQ=18.24;MQ0=0;MQRankSum=0.731;QD=7.33;ReadPosRankSum=-0.895;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:52,6,0 0/0:4,0:4:3:0,3,25 0/0:3,0:3:6:0,6,64 1/1:1,1:2:3:28,3,0 +chr2 88423915 . G A 35.30 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.680;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.4757;MLEAC=2;MLEAF=0.250;MQ=20.84;MQ0=0;MQRankSum=1.686;QD=1.41;ReadPosRankSum=0.076;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:13:64:64,0,72 0/0:7,0:7:6:0,6,54 0/1:11,1:12:11:11,0,133 0/0:10,0:10:15:0,15,155 +chr2 88424066 rs2241883 T C 1625.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.615;DB;DP=138;Dels=0.01;FS=4.513;HaplotypeScore=2.4853;MLEAC=4;MLEAF=0.500;MQ=36.45;MQ0=0;MQRankSum=3.272;QD=15.63;ReadPosRankSum=0.710;SB=-7.950e+02 GT:AD:DP:GQ:PL 0/0:34,0:34:93:0,93,1165 1/1:9,25:34:75:995,75,0 0/1:22,12:34:99:396,0,532 0/1:25,10:35:99:283,0,707 +chr2 88478437 . T G 147.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.700;DP=315;Dels=0.00;FS=96.840;HaplotypeScore=10.1769;MLEAC=4;MLEAF=0.500;MQ=34.80;MQ0=0;MQRankSum=-3.003;QD=0.47;ReadPosRankSum=-3.349;SB=-2.664e-02 GT:AD:DP:GQ:PL 0/1:69,6:75:24:24,0,1778 0/1:71,8:79:79:79,0,1668 0/1:79,7:86:40:40,0,1968 0/1:69,6:75:47:47,0,1635 +chr2 89104985 rs140028381 G A 94.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.001;DB;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9239;MLEAC=3;MLEAF=0.375;MQ=10.42;MQ0=0;MQRankSum=4.116;QD=1.22;ReadPosRankSum=2.658;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:3:0,3,32 0/1:26,5:31:23:90,0,23 0/1:34,2:36:25:27,0,25 0/1:10,1:11:19:19,0,52 +chr2 89399594 . C G 148.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.292;DP=132;Dels=0.00;FS=74.003;HaplotypeScore=0.9665;MLEAC=4;MLEAF=0.500;MQ=12.80;MQ0=0;MQRankSum=2.542;QD=1.13;ReadPosRankSum=1.937;SB=-1.002e+00 GT:AD:DP:GQ:PL 0/1:27,4:31:50:50,0,66 0/1:30,4:34:20:68,0,20 0/1:35,5:40:53:53,0,72 0/1:24,3:27:20:20,0,23 +chr2 90249180 . T C 64.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.475;DP=354;Dels=0.00;FS=3.173;HaplotypeScore=1.3321;MLEAC=2;MLEAF=0.250;MQ=6.86;MQ0=0;MQRankSum=4.528;QD=0.35;ReadPosRankSum=-1.722;SB=-4.613e+00 GT:AD:DP:GQ:PL 0/1:85,3:88:27:65,0,27 0/1:95,2:97:40:40,0,77 0/0:107,0:107:3:0,3,38 0/0:59,3:62:18:0,18,178 +chr2 91790825 . C A 64.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.472;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=4.5208;MLEAC=3;MLEAF=0.375;MQ=12.43;MQ0=0;MQRankSum=3.363;QD=0.48;ReadPosRankSum=1.029;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,4:35:32:32,0,109 0/1:46,4:50:31:57,0,31 0/1:44,4:48:17:17,0,25 0/0:10,2:13:3:0,3,24 +chr2 91843429 rs112522780 G C 39.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.855;DB;DP=184;Dels=0.00;FS=9.997;HaplotypeScore=1.8569;MLEAC=2;MLEAF=0.250;MQ=10.72;MQ0=0;MQRankSum=1.489;QD=0.41;ReadPosRankSum=-1.457;SB=4.65 GT:AD:DP:GQ:PL 0/0:43,2:45:3:0,3,32 0/1:44,3:47:52:52,0,112 0/0:42,0:42:6:0,6,74 0/1:48,2:50:27:27,0,37 +chr2 92222609 . T G 80.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.632;DP=39;Dels=0.00;FS=9.454;HaplotypeScore=5.2038;MLEAC=2;MLEAF=0.250;MQ=18.40;MQ0=0;MQRankSum=0.065;QD=2.86;ReadPosRankSum=-1.023;SB=1.29 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,63 0/0:5,0:6:6:0,6,62 0/1:10,4:14:16:55,0,16 0/1:9,5:14:63:65,0,63 +chr2 92305748 rs112749373 A G 485.40 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.905;DB;DP=22;Dels=0.00;FS=2.702;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=25.68;MQ0=0;MQRankSum=2.646;QD=23.11;ReadPosRankSum=-1.270;SB=-1.666e+02 GT:AD:DP:GQ:PL 1/1:1,6:7:18:207,18,0 1/1:3,6:9:18:191,18,0 1/1:0,5:5:12:125,12,0 ./. +chr2 95766599 rs115258802 C T 76.30 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.054;DB;DP=55;Dels=0.00;FS=7.513;HaplotypeScore=0.3222;MLEAC=2;MLEAF=0.333;MQ=23.36;MQ0=0;MQRankSum=1.437;QD=2.46;ReadPosRankSum=0.589;SB=-2.889e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:25:25,0,249 0/0:22,0:22:45:0,45,387 0/1:14,3:17:90:90,0,179 ./. +chr2 95847047 rs112887855 G A 44.89 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.580;DB;DP=175;Dels=0.03;FS=4.500;HaplotypeScore=99.3733;MLEAC=1;MLEAF=0.125;MQ=31.56;MQ0=0;MQRankSum=1.299;QD=1.12;ReadPosRankSum=-5.315;SB=-6.995e+00 GT:AD:DP:GQ:PL 0/0:40,3:43:1:0,1,1153 0/1:33,5:39:80:80,0,910 0/0:46,3:49:21:0,21,1294 0/0:37,2:39:32:0,32,929 +chr2 95943090 . A T 40.20 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.857;DP=52;Dels=0.00;FS=5.435;HaplotypeScore=3.4184;MLEAC=2;MLEAF=0.250;MQ=27.15;MQ0=0;MQRankSum=0.355;QD=1.68;ReadPosRankSum=-0.439;SB=-5.255e-01 GT:AD:DP:GQ:PL 0/1:8,1:9:14:14,0,158 0/1:12,3:15:67:67,0,119 0/0:15,0:15:30:0,30,340 0/0:13,0:13:15:0,15,145 +chr2 95946916 . GA G 199 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.375;DP=47;FS=0.000;HaplotypeScore=24.5556;MLEAC=5;MLEAF=0.625;MQ=20.93;MQ0=0;MQRankSum=-0.717;QD=4.23;ReadPosRankSum=-2.559;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:8,2:8:67:67,0,197 0/1:7,2:7:73:73,0,116 0/1:10,1:7:23:23,0,243 1/1:10,3:5:7:89,7,0 +chr2 95950790 . C G 50.24 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.786;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=4.7220;MLEAC=4;MLEAF=0.500;MQ=21.33;MQ0=0;MQRankSum=1.135;QD=2.64;ReadPosRankSum=0.087;SB=1.04 GT:AD:DP:GQ:PL 0/1:8,2:10:39:39,0,43 0/0:6,1:7:6:0,6,76 1/1:3,1:4:3:27,3,0 0/1:4,1:5:27:27,0,50 +chr2 96072966 . C A 140.30 . AC=8;AF=1.00;AN=8;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7249;MLEAC=8;MLEAF=1.00;MQ=24.45;MQ0=0;QD=11.69;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,4:4:9:91,9,0 1/1:1,3:4:3:25,3,0 1/1:0,2:2:3:23,3,0 1/1:1,1:2:3:38,3,0 +chr2 96072981 . T G 123.70 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.968;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=1.6884;MLEAC=7;MLEAF=0.875;MQ=22.16;MQ0=0;MQRankSum=2.388;QD=5.38;ReadPosRankSum=0.968;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:7,1:8:3:35,3,0 0/0:5,0:5:3:0,3,31 1/1:4,2:6:3:32,3,0 1/1:5,3:8:9:99,9,0 +chr2 96213318 . G A 30.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.953;DP=151;Dels=0.01;FS=27.655;HaplotypeScore=4.0799;MLEAC=2;MLEAF=0.250;MQ=18.46;MQ0=0;MQRankSum=1.712;QD=0.49;ReadPosRankSum=1.329;SB=-4.480e+00 GT:AD:DP:GQ:PL 0/0:39,1:40:9:0,9,324 0/1:41,3:45:64:64,0,215 0/0:45,2:47:36:0,36,358 0/1:16,2:18:4:4,0,163 +chr2 96781677 . G A 51.50 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.679;DP=48;Dels=0.00;FS=16.724;HaplotypeScore=5.9929;MLEAC=2;MLEAF=0.333;MQ=21.46;MQ0=0;MQRankSum=0.854;QD=1.91;ReadPosRankSum=-1.326;SB=0.314 GT:AD:DP:GQ:PL ./. 0/1:10,1:11:20:20,0,76 0/1:13,3:16:70:70,0,100 0/0:9,0:9:15:0,15,174 +chr2 96795944 rs749457 A G 919.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.111;DB;DP=84;Dels=0.02;FS=0.000;HaplotypeScore=1.3656;MLEAC=4;MLEAF=0.500;MQ=34.11;MQ0=0;MQRankSum=-0.792;QD=10.95;ReadPosRankSum=-0.938;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,5:21:99:129,0,448 0/1:7,10:17:99:280,0,179 0/1:16,10:26:99:294,0,503 0/1:10,8:18:99:259,0,275 +chr2 96933513 . G A 92.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.648;DP=102;Dels=0.00;FS=25.055;HaplotypeScore=6.1723;MLEAC=3;MLEAF=0.375;MQ=29.03;MQ0=0;MQRankSum=-2.970;QD=1.29;ReadPosRankSum=1.189;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/0:29,1:30:15:0,15,486 0/1:24,4:28:49:49,0,385 0/1:23,4:27:52:52,0,410 0/1:13,3:17:35:35,0,172 +chr2 96952492 . A T 278.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.282;DP=220;Dels=0.00;FS=25.854;HaplotypeScore=9.2391;MLEAC=2;MLEAF=0.250;MQ=36.46;MQ0=0;MQRankSum=-3.218;QD=2.40;ReadPosRankSum=1.025;SB=-1.844e+00 GT:AD:DP:GQ:PL 0/1:44,10:54:99:217,0,1011 0/0:40,1:41:54:0,54,973 0/0:59,4:63:12:0,12,1438 0/1:55,7:62:99:103,0,1464 +chr2 97214947 . A C 242.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.087;DP=87;Dels=0.03;FS=32.589;HaplotypeScore=5.7225;MLEAC=4;MLEAF=0.500;MQ=26.70;MQ0=0;MQRankSum=-1.224;QD=2.79;ReadPosRankSum=1.208;SB=-1.549e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:74:74,0,158 0/1:20,3:23:45:45,0,315 0/1:19,7:26:99:136,0,357 0/1:17,2:19:30:30,0,258 +chr2 97483137 . G A 54.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.853;DP=121;Dels=0.03;FS=9.840;HaplotypeScore=16.3580;MLEAC=2;MLEAF=0.250;MQ=32.00;MQ0=0;MQRankSum=-2.439;QD=0.85;ReadPosRankSum=2.351;SB=-3.023e-03 GT:AD:DP:GQ:PL 0/0:30,0:30:48:0,48,612 0/0:27,0:27:42:0,42,447 0/1:29,6:35:59:59,0,678 0/1:22,3:25:37:37,0,424 +chr2 97613616 rs1624844 T C 592.72 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.977;DB;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=0.2492;MLEAC=5;MLEAF=0.625;MQ=35.10;MQ0=0;MQRankSum=0.248;QD=15.60;ReadPosRankSum=2.036;SB=-1.829e+02 GT:AD:DP:GQ:PL 1/1:1,6:7:18:245,18,0 0/1:3,4:7:26:123,0,26 0/1:7,5:12:99:170,0,199 0/1:7,4:11:99:100,0,217 +chr2 97712339 rs1257117 C A 517.28 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.670;DB;DP=136;Dels=0.00;FS=18.983;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=10.57;MQ0=0;MQRankSum=1.520;QD=3.80;ReadPosRankSum=0.030;SB=-1.615e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:9:100,9,0 1/1:4,34:38:15:147,15,0 1/1:2,38:40:18:197,18,0 1/1:4,26:30:12:112,12,0 +chr2 97818188 rs141129874 T C 281.78 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.408;DB;DP=91;Dels=0.00;FS=2.592;HaplotypeScore=1.7478;MLEAC=5;MLEAF=0.625;MQ=9.65;MQ0=0;MQRankSum=4.472;QD=3.10;ReadPosRankSum=-1.999;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:34,5:39:7:82,0,7 0/1:3,12:15:4:106,0,4 0/1:19,9:28:8:85,0,8 1/1:5,4:9:6:50,6,0 +chr2 97909702 . C A 1580.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.964;DP=123;Dels=0.00;FS=35.360;HaplotypeScore=2.0825;MLEAC=4;MLEAF=0.500;MQ=22.32;MQ0=0;MQRankSum=2.739;QD=12.85;ReadPosRankSum=4.333;SB=-7.308e+02 GT:AD:DP:GQ:PL 0/1:16,14:30:80:352,0,80 0/1:11,24:36:55:584,0,55 0/1:18,22:40:69:492,0,69 0/1:8,9:17:61:195,0,61 +chr2 97911395 . A G 408.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.541;DP=66;Dels=0.02;FS=7.122;HaplotypeScore=5.2513;MLEAC=4;MLEAF=0.500;MQ=21.27;MQ0=0;MQRankSum=-1.257;QD=6.19;ReadPosRankSum=1.361;SB=-1.239e+02 GT:AD:DP:GQ:PL 0/1:10,8:18:84:84,0,200 0/1:9,9:18:99:135,0,99 0/1:12,13:25:89:210,0,89 0/1:3,1:4:22:22,0,25 +chr2 98175558 . T C 41.38 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.845;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7421;MLEAC=4;MLEAF=0.500;MQ=10.76;MQ0=0;MQRankSum=1.495;QD=0.80;ReadPosRankSum=2.980;SB=-4.398e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:3:0,3,31 0/1:16,2:19:36:36,0,56 1/1:18,4:23:3:31,3,0 0/1:9,1:10:16:16,0,57 +chr2 98709549 . T G 37.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.132;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=11.2762;MLEAC=2;MLEAF=0.250;MQ=28.93;MQ0=0;MQRankSum=1.129;QD=1.25;ReadPosRankSum=-1.798;SB=21.81 GT:AD:DP:GQ:PL 0/0:14,0:16:3:0,3,29 0/0:18,0:18:9:0,9,96 0/1:15,2:17:50:50,0,106 0/1:12,1:13:27:27,0,79 +chr2 98833594 rs10172087 C T 223.89 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.586;DB;DP=18;Dels=0.00;FS=18.325;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=22.73;MQ0=0;MQRankSum=3.367;QD=12.44;ReadPosRankSum=-0.927;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,3:5:3:41,3,0 1/1:1,2:3:6:78,6,0 1/1:4,3:7:9:103,9,0 1/1:1,2:3:3:39,3,0 +chr2 99152115 . A G 621.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.207;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=17.7977;MLEAC=4;MLEAF=0.500;MQ=28.92;MQ0=0;MQRankSum=-3.947;QD=5.31;ReadPosRankSum=5.793;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,14:36:99:252,0,438 0/1:24,14:39:99:292,0,258 0/1:26,4:30:54:54,0,287 0/1:8,4:12:66:66,0,102 +chr2 99155932 . A T 127.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.973;DP=88;Dels=0.01;FS=2.648;HaplotypeScore=7.3077;MLEAC=4;MLEAF=0.500;MQ=21.31;MQ0=0;MQRankSum=-1.384;QD=1.45;ReadPosRankSum=1.021;SB=-1.636e-02 GT:AD:DP:GQ:PL 0/1:11,4:15:45:45,0,86 0/1:15,5:20:22:49,0,22 0/1:22,5:27:50:50,0,177 0/1:20,5:25:26:26,0,252 +chr2 99162943 . C T 80.60 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.879;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=11.3141;MLEAC=3;MLEAF=0.375;MQ=23.43;MQ0=0;MQRankSum=0.609;QD=2.01;ReadPosRankSum=1.339;SB=1.40 GT:AD:DP:GQ:PL 0/1:14,5:19:78:78,0,232 0/1:10,1:12:30:30,0,71 0/0:16,1:17:9:0,9,303 0/1:7,1:8:15:15,0,47 +chr2 99279512 . T G 41.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.231;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=2.1747;MLEAC=1;MLEAF=0.125;MQ=35.04;MQ0=0;MQRankSum=-2.654;QD=1.24;ReadPosRankSum=0.260;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:81,1:82:99:0,145,2051 0/0:91,1:92:99:0,211,2847 0/0:83,1:84:99:0,200,2606 0/1:27,6:34:78:78,0,588 +chr2 99858866 . G C 142.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.355;DP=253;Dels=0.00;FS=116.956;HaplotypeScore=18.4851;MLEAC=2;MLEAF=0.250;MQ=35.05;MQ0=0;MQRankSum=-3.502;QD=1.36;ReadPosRankSum=-0.355;SB=-9.813e-01 GT:AD:DP:GQ:PL 0/0:68,5:73:68:0,68,1869 0/1:64,9:73:99:117,0,1627 0/0:71,4:75:39:0,39,1663 0/1:26,6:32:67:67,0,472 +chr2 99976564 rs3828162 A G 275.27 . AC=4;AF=1.00;AN=4;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=31.54;MQ0=0;QD=30.59;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,4:4:12:136,12,0 1/1:0,5:5:15:175,15,0 ./. ./. +chr2 100007112 . G C 372.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.458;DP=190;Dels=0.01;FS=154.697;HaplotypeScore=13.8200;MLEAC=3;MLEAF=0.375;MQ=35.02;MQ0=0;MQRankSum=-2.442;QD=2.41;ReadPosRankSum=1.861;SB=0.916 GT:AD:DP:GQ:PL 0/1:35,8:44:99:189,0,756 0/1:42,10:53:99:196,0,807 0/1:52,5:57:31:31,0,1006 0/0:34,1:35:37:0,37,769 +chr2 100035414 . T A 40.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.098;DP=100;Dels=0.00;FS=7.325;HaplotypeScore=5.5063;MLEAC=2;MLEAF=0.250;MQ=25.54;MQ0=0;MQRankSum=-2.198;QD=0.70;ReadPosRankSum=2.238;SB=-1.089e+00 GT:AD:DP:GQ:PL 0/1:25,4:29:40:40,0,310 0/1:26,3:29:41:41,0,375 0/0:24,2:26:4:0,4,299 0/0:16,0:16:24:0,24,251 +chr2 100176775 rs13008878 A G 469.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.624;DB;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.9914;MLEAC=1;MLEAF=0.125;MQ=39.71;MQ0=0;MQRankSum=-2.050;QD=18.80;ReadPosRankSum=0.991;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,15:25:99:506,0,337 0/0:22,0:22:63:0,63,811 0/0:34,0:34:96:0,96,1308 0/0:36,0:36:99:0,105,1385 +chr2 100360637 . T G 120.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.664;DP=42;Dels=0.00;FS=2.606;HaplotypeScore=4.6842;MLEAC=3;MLEAF=0.375;MQ=22.50;MQ0=0;MQRankSum=0.898;QD=3.56;ReadPosRankSum=2.030;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:5,2:7:39:39,0,40 0/1:13,4:17:73:73,0,116 0/1:7,3:10:51:51,0,104 0/0:8,0:8:6:0,6,60 +chr2 100915772 rs4851287 A G 538.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=4.340;DB;DP=115;Dels=0.00;FS=1.680;HaplotypeScore=0.2474;MLEAC=2;MLEAF=0.250;MQ=32.49;MQ0=0;MQRankSum=-0.894;QD=8.29;ReadPosRankSum=1.011;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:14,16:30:99:308,0,427 0/1:21,14:35:99:272,0,548 0/0:29,0:30:75:0,75,947 0/0:20,0:20:48:0,48,550 +chr2 101185547 . T A 32.27 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.891;DP=57;Dels=0.00;FS=5.412;HaplotypeScore=2.2230;MLEAC=6;MLEAF=0.750;MQ=11.52;MQ0=0;MQRankSum=2.982;QD=0.81;ReadPosRankSum=2.475;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:11,2:14:3:27,3,0 1/1:11,1:12:3:23,3,0 1/1:12,1:14:3:23,3,0 0/0:17,0:17:3:0,3,42 +chr2 101627852 rs1062059 C T 1071.63 . AC=7;AF=0.875;AN=8;BaseQRankSum=-2.158;DB;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=8.2143;MLEAC=7;MLEAF=0.875;MQ=23.78;MQ0=0;MQRankSum=-1.459;QD=11.78;ReadPosRankSum=2.314;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,8:28:99:124,0,391 1/1:5,16:21:33:336,33,0 1/1:3,23:26:51:530,51,0 1/1:4,11:15:15:126,15,0 +chr2 101646144 rs3739015 G A 4912.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.165;DB;DP=196;Dels=0.01;FS=1.698;HaplotypeScore=6.3507;MLEAC=7;MLEAF=0.875;MQ=30.86;MQ0=0;MQRankSum=-0.371;QD=25.06;ReadPosRankSum=0.506;SB=-2.416e+03 GT:AD:DP:GQ:PL 0/1:27,20:47:99:530,0,584 1/1:1,43:44:99:1246,111,0 1/1:4,51:55:99:1655,138,0 1/1:4,45:49:99:1481,126,0 +chr2 101874442 rs6757365 C T 662.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.635;DB;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=40.26;MQ0=0;MQRankSum=-2.428;QD=10.19;ReadPosRankSum=2.684;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,10:31:99:290,0,775 0/1:21,13:34:99:414,0,676 0/0:40,0:40:99:0,117,1605 0/0:26,0:26:78:0,78,1016 +chr2 101902561 . G T 34.19 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.870;DP=134;Dels=0.00;FS=7.117;HaplotypeScore=1.7265;MLEAC=1;MLEAF=0.125;MQ=37.19;MQ0=0;MQRankSum=-3.528;QD=1.90;ReadPosRankSum=-1.870;SB=-5.532e+00 GT:AD:DP:GQ:PL 0/0:32,1:33:43:0,43,860 0/0:38,0:38:84:0,84,1007 0/0:42,3:45:8:0,8,969 0/1:14,4:18:70:70,0,419 +chr2 102038689 . G A 92.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.169;DP=74;Dels=0.01;FS=2.446;HaplotypeScore=7.9335;MLEAC=3;MLEAF=0.375;MQ=25.00;MQ0=0;MQRankSum=-1.001;QD=1.57;ReadPosRankSum=1.547;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:21:62:62,0,125 0/0:14,1:15:18:0,18,231 0/1:13,2:15:27:27,0,196 0/1:19,3:22:47:47,0,235 +chr2 102407315 . T C 108.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.147;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.5554;MLEAC=2;MLEAF=0.250;MQ=30.01;MQ0=0;MQRankSum=-0.441;QD=2.78;ReadPosRankSum=0.637;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:9:0,9,119 0/1:14,2:16:32:32,0,104 0/1:18,5:23:99:116,0,142 0/0:2,0:2:3:0,3,41 +chr2 102487933 . A G 39.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.259;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1616;MLEAC=3;MLEAF=0.375;MQ=25.69;MQ0=0;MQRankSum=-0.032;QD=0.58;ReadPosRankSum=1.852;SB=-5.568e-03 GT:AD:DP:GQ:PL 0/0:17,0:17:33:0,33,346 0/1:21,3:25:61:61,0,203 0/1:19,2:21:15:15,0,305 0/1:20,2:22:4:4,0,166 +chr2 103040249 rs2272129 C G 91.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.261;DB;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5344;MLEAC=2;MLEAF=0.250;MQ=36.10;MQ0=0;MQRankSum=-1.995;QD=3.16;ReadPosRankSum=1.115;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:7:52:52,0,153 0/1:17,4:22:81:81,0,562 0/0:19,0:20:57:0,57,734 0/0:9,0:9:18:0,18,217 +chr2 103321082 . A T 179.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.126;DP=117;Dels=0.00;FS=36.713;HaplotypeScore=21.2495;MLEAC=4;MLEAF=0.500;MQ=27.24;MQ0=0;MQRankSum=1.106;QD=1.54;ReadPosRankSum=-0.206;SB=0.017 GT:AD:DP:GQ:PL 0/1:24,2:26:22:22,0,213 0/1:25,6:34:99:119,0,288 0/1:23,1:25:16:16,0,155 0/1:27,3:32:65:65,0,193 +chr2 103321087 . T C 420.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.619;DP=127;Dels=0.01;FS=27.782;HaplotypeScore=14.1564;MLEAC=4;MLEAF=0.500;MQ=28.77;MQ0=0;MQRankSum=2.840;QD=3.31;ReadPosRankSum=-4.024;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,5:27:99:113,0,292 0/1:33,6:39:99:128,0,536 0/1:23,4:27:74:74,0,321 0/1:26,7:33:99:148,0,332 +chr2 105388360 rs13034712 T A 50.35 . AC=1;AF=0.167;AN=6;BaseQRankSum=0.614;DB;DP=98;Dels=0.00;FS=2.330;HaplotypeScore=1.4900;MLEAC=1;MLEAF=0.167;MQ=11.33;MQ0=0;MQRankSum=1.754;QD=2.52;ReadPosRankSum=0.187;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,0:34:9:0,9,84 0/1:14,6:20:11:84,0,11 0/0:31,0:31:3:0,3,29 ./. +chr2 105473032 . T A 55.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.189;DP=104;Dels=0.00;FS=22.377;HaplotypeScore=1.8361;MLEAC=3;MLEAF=0.375;MQ=15.49;MQ0=0;MQRankSum=0.988;QD=0.78;ReadPosRankSum=-0.035;SB=-2.287e+00 GT:AD:DP:GQ:PL 0/1:11,3:15:41:41,0,42 0/0:30,2:32:6:0,6,66 0/1:35,2:37:37:37,0,146 0/1:19,1:20:20:20,0,107 +chr2 108475958 rs142985549 A G 58.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.733;DB;DP=154;Dels=0.00;FS=9.223;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=4.22;MQ0=0;MQRankSum=0.447;QD=0.84;ReadPosRankSum=1.055;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,44:46:3:33,3,0 ./. 1/1:0,23:23:6:59,6,0 +chr2 108487898 . G A 36.29 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.437;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1304;MLEAC=4;MLEAF=0.500;MQ=10.06;MQ0=0;MQRankSum=2.978;QD=0.65;ReadPosRankSum=0.459;SB=-2.597e+01 GT:AD:DP:GQ:PL 1/1:19,1:20:3:31,3,0 0/1:15,1:18:20:26,0,20 0/0:23,0:23:6:0,6,50 0/1:15,2:18:22:22,0,23 +chr2 108868736 rs13030422 G A 178.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.367;DB;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.8724;MLEAC=3;MLEAF=0.375;MQ=35.98;MQ0=0;MQRankSum=-0.367;QD=11.92;ReadPosRankSum=-0.501;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:21:0,21,278 0/1:5,2:7:52:52,0,166 0/1:1,2:3:33:67,0,33 0/1:2,3:5:70:103,0,70 +chr2 108875093 rs2198463 T A 219.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.745;DB;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7468;MLEAC=1;MLEAF=0.125;MQ=39.05;MQ0=0;MQRankSum=-2.024;QD=10.48;ReadPosRankSum=1.889;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,8:21:99:256,0,415 0/0:22,0:22:66:0,66,893 0/0:26,0:26:75:0,75,993 0/0:17,0:17:51:0,51,669 +chr2 108938813 . T G 218.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.878;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=1.1459;MLEAC=3;MLEAF=0.375;MQ=33.57;MQ0=0;MQRankSum=-3.397;QD=4.47;ReadPosRankSum=0.444;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:29:29,0,298 0/1:15,7:22:99:122,0,353 0/0:19,0:19:48:0,48,580 0/1:8,6:14:99:111,0,137 +chr2 109328942 . G A 47.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.900;DP=112;Dels=0.00;FS=18.896;HaplotypeScore=0.9273;MLEAC=3;MLEAF=0.375;MQ=15.44;MQ0=0;MQRankSum=3.122;QD=0.52;ReadPosRankSum=-0.568;SB=0.735 GT:AD:DP:GQ:PL 0/0:21,0:21:12:0,12,153 0/1:23,1:25:17:17,0,86 0/1:33,2:35:26:26,0,141 0/1:29,2:31:47:47,0,93 +chr2 109522720 rs260639 G A 787.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.126;DB;DP=65;Dels=0.00;FS=8.067;HaplotypeScore=1.6979;MLEAC=5;MLEAF=0.625;MQ=24.93;MQ0=0;MQRankSum=0.992;QD=12.12;ReadPosRankSum=-0.888;SB=-2.466e+01 GT:AD:DP:GQ:PL 1/1:2,12:14:30:311,30,0 0/1:12,7:19:99:180,0,223 0/1:7,8:15:99:203,0,105 0/1:9,7:17:45:139,0,45 +chr2 110922067 . A T 32.27 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.781;DP=65;Dels=0.00;FS=4.512;HaplotypeScore=18.6534;MLEAC=3;MLEAF=0.375;MQ=21.89;MQ0=0;MQRankSum=-0.455;QD=0.57;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:40:40,0,43 0/1:22,1:23:21:21,0,42 0/1:18,2:21:13:13,0,61 0/0:7,0:8:6:0,6,47 +chr2 110941780 . G T 74.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.837;DP=42;Dels=0.00;FS=19.158;HaplotypeScore=1.7192;MLEAC=2;MLEAF=0.250;MQ=28.30;MQ0=0;MQRankSum=1.837;QD=4.14;ReadPosRankSum=-0.076;SB=2.66 GT:AD:DP:GQ:PL 0/0:12,0:12:21:0,21,205 0/1:6,2:8:68:68,0,81 0/1:8,2:10:48:48,0,136 0/0:12,0:12:21:0,21,232 +chr2 111875352 . G T 82.20 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.377;DP=21;Dels=0.05;FS=0.000;HaplotypeScore=4.8354;MLEAC=7;MLEAF=0.875;MQ=19.44;MQ0=0;MQRankSum=1.791;QD=3.91;ReadPosRankSum=-1.369;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,1:5:3:24,3,0 0/1:5,3:8:17:43,0,17 1/1:1,1:2:3:30,3,0 1/1:3,1:5:3:25,3,0 +chr2 112834907 . T A 145.28 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.461;DP=57;Dels=0.02;FS=2.006;HaplotypeScore=10.8069;MLEAC=3;MLEAF=0.500;MQ=21.72;MQ0=0;MQRankSum=0.921;QD=2.74;ReadPosRankSum=0.787;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:36:109,0,36 0/1:16,2:18:25:25,0,42 0/1:15,3:18:50:50,0,90 ./. +chr2 112945188 rs4848281 T A 877.57 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.464;DB;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=4.1866;MLEAC=7;MLEAF=0.875;MQ=25.35;MQ0=0;MQRankSum=-1.574;QD=13.93;ReadPosRankSum=1.030;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,6:17:99:110,0,319 1/1:7,8:15:21:202,21,0 1/1:4,12:16:33:331,33,0 1/1:4,10:14:30:279,30,0 +chr2 113082463 . A C 74.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.248;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=16.4228;MLEAC=4;MLEAF=0.500;MQ=24.51;MQ0=0;MQRankSum=0.457;QD=0.87;ReadPosRankSum=3.051;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,3:28:40:40,0,307 0/1:26,2:28:9:9,0,144 0/1:25,3:29:65:65,0,165 0/0:23,1:24:1:0,1,247 +chr2 113416320 . T C 55.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.868;DP=38;Dels=0.00;FS=8.435;HaplotypeScore=5.9619;MLEAC=3;MLEAF=0.375;MQ=21.05;MQ0=0;MQRankSum=1.571;QD=1.60;ReadPosRankSum=0.586;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:22:22,0,65 0/1:11,2:13:38:38,0,84 0/1:11,3:14:16:37,0,16 0/0:3,0:3:3:0,3,41 +chr2 113480814 . C T 267.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.196;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.1364;MLEAC=4;MLEAF=0.500;MQ=32.40;MQ0=0;MQRankSum=-1.999;QD=3.77;ReadPosRankSum=2.283;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,4:13:74:74,0,228 0/1:21,2:23:34:34,0,380 0/1:16,8:24:99:165,0,381 0/1:9,2:11:37:37,0,127 +chr2 113482779 rs4849116 A C 99.35 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.455;DB;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.6950;MLEAC=6;MLEAF=1.00;MQ=12.69;MQ0=0;MQRankSum=3.469;QD=4.73;ReadPosRankSum=0.485;SB=-4.814e+01 GT:AD:DP:GQ:PL 1/1:5,1:6:3:24,3,0 1/1:4,2:6:3:30,3,0 ./. 1/1:5,4:9:9:81,9,0 +chr2 113739023 . C G 124.91 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.100;DP=27;Dels=0.00;FS=9.054;HaplotypeScore=6.3669;MLEAC=4;MLEAF=0.500;MQ=25.63;MQ0=0;MQRankSum=2.238;QD=4.63;ReadPosRankSum=-2.105;SB=-1.368e+00 GT:AD:DP:GQ:PL 0/1:5,2:7:25:59,0,25 0/1:3,1:5:13:13,0,79 0/1:3,3:6:43:81,0,43 0/1:8,1:9:14:14,0,136 +chr2 113875522 . T A 600.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.378;DP=131;Dels=0.00;FS=20.008;HaplotypeScore=4.0351;MLEAC=4;MLEAF=0.500;MQ=38.16;MQ0=0;MQRankSum=-0.417;QD=4.58;ReadPosRankSum=3.362;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,6:27:99:101,0,590 0/1:27,8:35:99:165,0,561 0/1:26,11:37:99:288,0,635 0/1:27,5:32:89:89,0,684 +chr2 113875565 rs2234678 A G 1439.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.092;DB;DP=207;Dels=0.00;FS=5.333;HaplotypeScore=3.0974;MLEAC=3;MLEAF=0.375;MQ=34.14;MQ0=0;MQRankSum=-4.583;QD=9.60;ReadPosRankSum=-1.037;SB=-2.850e+02 GT:AD:DP:GQ:PL 0/1:33,23:56:99:647,0,970 0/0:57,0:57:99:0,147,1921 0/1:41,20:61:99:524,0,1119 0/1:19,12:32:99:312,0,476 +chr2 113953242 . A C 131.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.590;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=4.9368;MLEAC=3;MLEAF=0.375;MQ=32.50;MQ0=0;MQRankSum=1.695;QD=1.23;ReadPosRankSum=-1.030;SB=-1.253e-02 GT:AD:DP:GQ:PL 0/0:36,0:36:54:0,54,593 0/1:29,4:33:91:91,0,612 0/1:34,3:37:37:37,0,613 0/1:33,3:36:47:47,0,567 +chr2 113977706 . G C 43.75 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.739;DP=41;Dels=0.00;FS=1.900;HaplotypeScore=3.9022;MLEAC=3;MLEAF=0.375;MQ=26.26;MQ0=0;MQRankSum=-2.268;QD=2.19;ReadPosRankSum=1.147;SB=-1.798e+00 GT:AD:DP:GQ:PL 0/1:8,1:9:13:13,0,89 0/1:8,3:11:31:69,0,31 0/0:10,2:12:0:0,0,202 0/0:8,1:9:9:0,9,92 +chr2 113999603 . T A 189.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.176;DP=42;Dels=0.00;FS=25.873;HaplotypeScore=0.2892;MLEAC=4;MLEAF=0.500;MQ=31.97;MQ0=0;MQRankSum=-1.567;QD=4.51;ReadPosRankSum=-0.228;SB=0.199 GT:AD:DP:GQ:PL 0/1:6,4:10:71:71,0,185 0/1:5,3:8:88:88,0,155 0/1:10,2:12:38:38,0,145 0/1:9,3:12:35:35,0,230 +chr2 114399145 rs114994309 G A 204.20 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.137;DB;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=0.4958;MLEAC=7;MLEAF=0.875;MQ=11.14;MQ0=0;MQRankSum=1.910;QD=1.93;ReadPosRankSum=0.700;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:16,13:29:9:102,9,0 1/1:1,22:23:6:73,6,0 0/1:18,11:29:19:34,0,19 1/1:14,10:24:3:37,3,0 +chr2 114425685 rs11682527 G T 227.66 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.483;DB;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.1835;MLEAC=7;MLEAF=0.875;MQ=17.55;MQ0=0;MQRankSum=1.793;QD=5.69;ReadPosRankSum=1.173;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:52:52,0,71 1/1:2,8:10:9:82,9,0 1/1:8,1:9:3:39,3,0 1/1:5,4:9:9:97,9,0 +chr2 114475347 . G C 126.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.247;DP=126;Dels=0.00;FS=6.853;HaplotypeScore=1.2420;MLEAC=2;MLEAF=0.250;MQ=37.73;MQ0=0;MQRankSum=0.569;QD=2.52;ReadPosRankSum=-0.482;SB=-2.981e+00 GT:AD:DP:GQ:PL 0/1:29,4:34:43:43,0,901 0/0:38,1:39:45:0,45,978 0/0:34,3:37:2:0,2,897 0/1:11,5:16:99:123,0,221 +chr2 114513386 rs7578249 C T 1124.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.387;DB;DP=88;Dels=0.00;FS=2.963;HaplotypeScore=0.9253;MLEAC=5;MLEAF=0.625;MQ=36.28;MQ0=0;MQRankSum=-2.065;QD=12.78;ReadPosRankSum=2.734;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,7:21:99:167,0,488 1/1:2,21:23:63:811,63,0 0/1:23,5:28:88:88,0,813 0/1:12,4:16:99:104,0,263 +chr2 114670740 . G A 41.23 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.513;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.2774;MLEAC=2;MLEAF=0.333;MQ=28.81;MQ0=0;MQRankSum=-2.631;QD=0.82;ReadPosRankSum=1.251;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,4:21:69:69,0,230 0/0:22,1:23:30:0,30,316 0/1:27,2:29:10:10,0,290 ./. +chr2 116497479 rs1550854 A G 4411.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.004;DB;DP=136;Dels=0.00;FS=8.399;HaplotypeScore=0.7490;MLEAC=8;MLEAF=1.00;MQ=36.71;MQ0=0;MQRankSum=2.029;QD=32.43;ReadPosRankSum=2.523;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:11,30:41:35:1137,35,0 1/1:4,27:31:81:1070,81,0 1/1:6,35:41:79:1348,79,0 1/1:1,22:23:66:856,66,0 +chr2 116594221 rs736335 G C 1427.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.298;DB;DP=201;Dels=0.00;FS=7.354;HaplotypeScore=1.4827;MLEAC=3;MLEAF=0.375;MQ=30.50;MQ0=0;MQRankSum=-0.965;QD=11.51;ReadPosRankSum=0.785;SB=-5.210e+02 GT:AD:DP:GQ:PL 0/1:27,21:48:99:554,0,616 0/0:77,0:77:99:0,195,2314 0/1:26,26:52:99:600,0,703 0/1:13,11:24:99:317,0,208 +chr2 118582936 rs112417042 A AG,ATAAAG 2297.37 . AC=2,4;AF=0.250,0.500;AN=8;BaseQRankSum=-3.160;DB;DP=57;FS=0.000;HaplotypeScore=26.4034;MLEAC=2,4;MLEAF=0.250,0.500;MQ=28.32;MQ0=0;MQRankSum=1.210;QD=40.30;ReadPosRankSum=-0.451;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/2:4,2,8:15:28:798,550,555,0,28,31 0/2:6,3,5:12:8:475,298,379,0,8,111 1/2:6,1,8:17:62:895,578,548,62,0,92 1/2:5,2,2:5:40:230,141,130,40,0,40 +chr2 119729008 . T C 36.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.315;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.9354;MLEAC=3;MLEAF=0.375;MQ=30.43;MQ0=0;MQRankSum=-2.353;QD=0.39;ReadPosRankSum=-2.746;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,3:31:16:16,0,713 0/1:23,3:26:32:32,0,525 0/0:28,3:31:9:0,9,847 0/1:31,4:36:31:31,0,702 +chr2 120204500 . C G 33.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.343;DP=58;Dels=0.00;FS=2.457;HaplotypeScore=9.8603;MLEAC=2;MLEAF=0.250;MQ=18.64;MQ0=0;MQRankSum=1.382;QD=1.21;ReadPosRankSum=-1.148;SB=-3.901e-02 GT:AD:DP:GQ:PL 0/1:6,4:10:12:64,0,12 0/0:17,1:19:9:0,9,109 0/1:17,1:18:9:9,0,95 0/0:11,0:11:9:0,9,92 +chr2 120221861 rs57757577 G A 322.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.592;DB;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.8468;MLEAC=3;MLEAF=0.375;MQ=34.75;MQ0=0;MQRankSum=0.146;QD=7.34;ReadPosRankSum=-0.180;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:11,4:15:82:82,0,218 0/0:19,0:19:54:0,54,716 0/1:8,5:13:99:124,0,247 0/1:11,5:16:99:160,0,268 +chr2 120388412 rs2272058 G A,C 5658.01 . AC=5,3;AF=0.625,0.375;AN=8;BaseQRankSum=4.033;DB;DP=241;Dels=0.02;FS=25.394;HaplotypeScore=6.1515;MLEAC=6,2;MLEAF=0.750,0.250;MQ=35.90;MQ0=0;MQRankSum=1.096;QD=23.48;ReadPosRankSum=3.945;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/2:12,38,10:60:99:1605,283,202,1292,0,1295 1/2:22,37,4:64:9:1308,28,9,1196,0,1277 1/2:23,38,5:66:16:1421,99,16,1294,0,1310 1/1:10,34,2:46:42:1324,102,0,1264,42,1258 +chr2 121729686 rs2592590 T C 647.63 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.622;DB;DP=41;Dels=0.00;FS=2.208;HaplotypeScore=2.6249;MLEAC=5;MLEAF=0.625;MQ=30.74;MQ0=0;MQRankSum=0.919;QD=15.80;ReadPosRankSum=0.991;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:4,5:9:19:161,0,19 0/1:5,2:7:48:49,0,48 1/1:3,11:14:30:357,30,0 0/1:7,4:11:59:126,0,59 +chr2 121747406 rs12711538 G A 297.02 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.102;DB;DP=29;Dels=0.03;FS=1.918;HaplotypeScore=1.6982;MLEAC=7;MLEAF=0.875;MQ=21.90;MQ0=0;MQRankSum=1.921;QD=10.24;ReadPosRankSum=-0.094;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:2,3:5:6:63,6,0 0/1:7,3:10:84:84,0,104 1/1:2,4:6:9:99,9,0 1/1:3,4:7:9:94,9,0 +chr2 122165196 . A C 71.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.867;DP=291;Dels=0.01;FS=47.136;HaplotypeScore=37.0632;MLEAC=1;MLEAF=0.125;MQ=31.74;MQ0=0;MQRankSum=-3.116;QD=0.83;ReadPosRankSum=0.819;SB=-8.341e+00 GT:AD:DP:GQ:PL 0/0:69,6:75:14:0,14,1548 0/0:67,5:72:61:0,61,1500 0/1:77,9:86:99:106,0,1238 0/0:51,4:56:0:0,0,953 +chr2 122216663 rs2304561 G A 737.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.908;DB;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=41.33;MQ0=0;MQRankSum=-1.955;QD=15.37;ReadPosRankSum=0.193;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,22:48:99:774,0,890 0/0:35,0:35:99:0,102,1392 0/0:34,0:34:90:0,90,1232 0/0:14,0:14:39:0,39,518 +chr2 122286442 rs934760 A G 475.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.776;DB;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.2499;MLEAC=1;MLEAF=0.125;MQ=41.76;MQ0=0;MQRankSum=-3.686;QD=10.58;ReadPosRankSum=0.502;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,16:45:99:512,0,1012 0/0:51,0:51:99:0,154,2149 0/0:56,0:56:99:0,169,2346 0/0:20,0:20:54:0,54,748 +chr2 122484976 rs1056014 G A 45.47 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.385;DB;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.6348;MLEAC=1;MLEAF=0.125;MQ=19.25;MQ0=0;MQRankSum=0.383;QD=3.25;ReadPosRankSum=1.235;SB=0.150 GT:AD:DP:GQ:PL 0/1:7,7:14:61:81,0,61 0/0:9,0:9:9:0,9,89 0/0:10,0:11:9:0,9,88 0/0:6,0:6:9:0,9,83 +chr2 127827545 . G A 59.63 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.478;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.7704;MLEAC=3;MLEAF=0.375;MQ=27.62;MQ0=0;MQRankSum=-1.165;QD=1.61;ReadPosRankSum=0.400;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:48:48,0,174 0/1:11,3:14:37:37,0,172 0/0:19,1:20:4:0,4,222 0/1:8,1:9:16:16,0,25 +chr2 128007686 rs6430936 A C 143.67 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.030;DB;DP=22;Dels=0.00;FS=15.128;HaplotypeScore=0.0000;MLEAC=6;MLEAF=0.750;MQ=20.62;MQ0=0;MQRankSum=0.634;QD=9.58;ReadPosRankSum=-0.158;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:6:79,6,0 0/0:6,1:7:6:0,6,79 1/1:2,3:5:6:77,6,0 1/1:1,2:3:3:32,3,0 +chr2 128017113 . A C 124.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.185;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.8734;MLEAC=3;MLEAF=0.375;MQ=32.23;MQ0=0;MQRankSum=-3.782;QD=1.47;ReadPosRankSum=0.770;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:30,3:33:15:0,15,794 0/1:23,6:29:99:101,0,446 0/1:26,4:30:36:36,0,657 0/1:21,5:26:31:31,0,611 +chr2 128044367 . T G 782.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.791;DP=201;Dels=0.00;FS=162.624;HaplotypeScore=2.8446;MLEAC=4;MLEAF=0.500;MQ=31.08;MQ0=0;MQRankSum=-1.766;QD=3.89;ReadPosRankSum=1.333;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:39,7:46:99:117,0,1011 0/1:40,15:55:99:302,0,972 0/1:44,12:56:99:246,0,1009 0/1:34,10:44:99:160,0,746 +chr2 128046548 rs4150416 C A 388.24 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.763;DB;DP=20;Dels=0.00;FS=4.771;HaplotypeScore=2.0108;MLEAC=6;MLEAF=0.750;MQ=30.88;MQ0=0;MQRankSum=0.796;QD=21.57;ReadPosRankSum=-0.328;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,8:9:24:285,24,0 0/1:3,2:5:32:67,0,32 1/1:2,2:4:6:82,6,0 0/0:1,0:2:3:0,3,35 +chr2 128327479 . C T 124.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.292;DP=61;Dels=0.02;FS=27.591;HaplotypeScore=6.9905;MLEAC=3;MLEAF=0.375;MQ=25.34;MQ0=0;MQRankSum=-1.545;QD=2.77;ReadPosRankSum=2.712;SB=0.342 GT:AD:DP:GQ:PL 0/1:9,7:16:76:76,0,189 0/1:12,4:16:51:51,0,230 0/0:16,0:16:30:0,30,343 0/1:10,2:12:41:41,0,69 +chr2 128345960 rs10928773 T C 435.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.610;DB;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=1.2183;MLEAC=3;MLEAF=0.375;MQ=33.59;MQ0=0;MQRankSum=-0.974;QD=6.92;ReadPosRankSum=-0.333;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:17,6:23:99:156,0,538 0/0:16,0:16:39:0,39,485 0/1:16,6:22:99:134,0,414 0/1:8,7:16:99:189,0,178 +chr2 128375709 . A T 47.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.075;DP=72;Dels=0.00;FS=5.010;HaplotypeScore=1.4921;MLEAC=3;MLEAF=0.375;MQ=19.34;MQ0=0;MQRankSum=2.681;QD=0.89;ReadPosRankSum=-1.157;SB=-1.594e-02 GT:AD:DP:GQ:PL 0/1:20,1:21:19:19,0,40 0/1:16,2:18:29:29,0,130 0/0:19,0:19:15:0,15,137 0/1:12,2:14:42:42,0,55 +chr2 128385535 . T C 90.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.479;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.0334;MLEAC=2;MLEAF=0.250;MQ=36.16;MQ0=0;MQRankSum=1.059;QD=2.38;ReadPosRankSum=0.624;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:83:83,0,386 0/0:21,1:22:20:0,20,680 0/0:28,1:29:47:0,47,937 0/1:15,3:18:49:49,0,385 +chr2 128393289 rs2255177 T C 147.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.233;DB;DP=47;Dels=0.00;FS=14.121;HaplotypeScore=1.0695;MLEAC=2;MLEAF=0.250;MQ=32.06;MQ0=0;MQRankSum=-0.796;QD=6.71;ReadPosRankSum=-0.609;SB=0.259 GT:AD:DP:GQ:PL 0/1:6,3:9:73:73,0,211 0/1:8,5:13:99:116,0,204 0/0:15,0:15:36:0,36,432 0/0:10,0:10:15:0,15,184 +chr2 128396819 . G A 98.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.599;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=6.4250;MLEAC=4;MLEAF=0.500;MQ=24.90;MQ0=0;MQRankSum=-2.267;QD=1.04;ReadPosRankSum=2.543;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:1:1,0,322 0/1:15,6:21:67:67,0,90 0/1:23,6:29:50:50,0,431 0/1:19,4:23:21:21,0,321 +chr2 128408384 . G C 274.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.969;DP=128;Dels=0.04;FS=100.758;HaplotypeScore=18.7661;MLEAC=4;MLEAF=0.500;MQ=28.18;MQ0=0;MQRankSum=-2.907;QD=2.15;ReadPosRankSum=3.334;SB=-1.973e+00 GT:AD:DP:GQ:PL 0/1:15,5:20:52:52,0,314 0/1:30,5:35:83:83,0,476 0/1:27,7:34:36:36,0,403 0/1:25,9:34:99:146,0,319 +chr2 128408955 . A G 48.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.928;DP=130;Dels=0.02;FS=19.573;HaplotypeScore=10.6402;MLEAC=3;MLEAF=0.375;MQ=32.59;MQ0=0;MQRankSum=-2.261;QD=0.49;ReadPosRankSum=-0.489;SB=1.84 GT:AD:DP:GQ:PL 0/1:31,5:36:42:42,0,817 0/1:29,4:33:34:34,0,583 0/1:27,2:29:16:16,0,560 0/0:29,1:30:23:0,23,637 +chr2 128477084 rs61730415 G C 217.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.344;DB;DP=79;Dels=0.00;FS=7.013;HaplotypeScore=2.3009;MLEAC=2;MLEAF=0.250;MQ=32.85;MQ0=0;MQRankSum=-1.127;QD=4.83;ReadPosRankSum=0.454;SB=-7.288e+01 GT:AD:DP:GQ:PL 0/1:18,6:24:99:149,0,469 0/1:16,5:21:99:110,0,303 0/0:21,0:21:57:0,57,701 0/0:12,0:13:30:0,30,378 +chr2 128480046 . A C 66.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.302;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.2498;MLEAC=2;MLEAF=0.250;MQ=37.87;MQ0=0;MQRankSum=-2.738;QD=1.62;ReadPosRankSum=1.460;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,4:30:67:67,0,755 0/0:26,0:26:72:0,72,943 0/0:20,1:21:25:0,25,730 0/1:9,2:11:41:41,0,266 +chr2 128699750 rs2304519 G C 1252.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.695;DB;DP=94;Dels=0.00;FS=1.463;HaplotypeScore=1.6379;MLEAC=5;MLEAF=0.625;MQ=34.54;MQ0=0;MQRankSum=-2.513;QD=13.33;ReadPosRankSum=1.661;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:3,19:22:30:625,30,0 0/1:22,10:32:99:274,0,559 0/1:16,7:23:99:206,0,457 0/1:10,7:17:99:193,0,281 +chr2 128747392 . C A 72.72 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.452;DP=122;Dels=0.00;FS=52.467;HaplotypeScore=5.8797;MLEAC=2;MLEAF=0.250;MQ=34.72;MQ0=0;MQRankSum=-1.717;QD=1.04;ReadPosRankSum=0.871;SB=0.704 GT:AD:DP:GQ:PL 0/0:25,1:26:40:0,40,781 0/1:28,6:34:87:87,0,667 0/1:32,4:36:27:27,0,853 0/0:25,1:26:13:0,13,498 +chr2 128867343 . T G 142.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.229;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3636;MLEAC=3;MLEAF=0.375;MQ=35.80;MQ0=0;MQRankSum=-2.626;QD=1.98;ReadPosRankSum=1.148;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,5:25:87:87,0,481 0/0:34,0:34:72:0,72,965 0/1:29,4:33:69:69,0,609 0/1:12,2:14:30:30,0,232 +chr2 130949605 . AAT A 213.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.452;DP=118;FS=16.782;HaplotypeScore=21.3000;MLEAC=3;MLEAF=0.375;MQ=8.85;MQ0=0;MQRankSum=0.194;QD=2.85;ReadPosRankSum=-1.356;SB=-1.974e+00 GT:AD:DP:GQ:PL 0/1:17,3:4:43:43,0,143 0/1:19,5:3:46:100,0,46 0/0:37,5:1:3:0,3,53 0/1:20,7:6:99:121,0,120 +chr2 131003683 . C T 41.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.555;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6489;MLEAC=2;MLEAF=0.250;MQ=21.29;MQ0=0;MQRankSum=1.368;QD=1.50;ReadPosRankSum=-1.331;SB=-6.037e-03 GT:AD:DP:GQ:PL 0/1:13,3:16:64:64,0,118 0/0:11,0:11:12:0,12,134 0/0:12,0:12:27:0,27,230 0/1:10,2:12:19:19,0,76 +chr2 131003687 . C G 92.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.284;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.0839;MLEAC=2;MLEAF=0.250;MQ=21.85;MQ0=0;MQRankSum=1.653;QD=3.20;ReadPosRankSum=-0.050;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:47:47,0,97 0/0:12,0:12:12:0,12,151 0/0:13,0:13:24:0,24,213 0/1:9,4:13:70:87,0,70 +chr2 131486627 . G T 811.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.651;DP=92;Dels=0.00;FS=13.031;HaplotypeScore=2.1622;MLEAC=4;MLEAF=0.500;MQ=31.15;MQ0=0;MQRankSum=4.544;QD=8.82;ReadPosRankSum=-0.801;SB=-2.084e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:23:23,0,140 0/1:16,8:24:99:260,0,186 0/1:22,10:32:99:281,0,164 0/1:16,9:25:99:290,0,136 +chr2 131521016 . G A 57.35 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.983;DP=65;Dels=0.00;FS=4.999;HaplotypeScore=3.9038;MLEAC=2;MLEAF=0.250;MQ=25.32;MQ0=0;MQRankSum=2.270;QD=1.69;ReadPosRankSum=-2.442;SB=-2.428e+00 GT:AD:DP:GQ:PL 0/1:11,4:15:91:91,0,169 0/1:18,1:19:4:4,0,203 0/0:15,0:15:24:0,24,244 0/0:16,0:16:30:0,30,289 +chr2 131890676 . T G 51.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.640;DP=72;Dels=0.00;FS=10.719;HaplotypeScore=0.4966;MLEAC=1;MLEAF=0.125;MQ=33.04;MQ0=0;MQRankSum=-2.245;QD=2.74;ReadPosRankSum=2.082;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:33:0,33,337 0/0:17,0:17:30:0,30,378 0/0:20,0:20:36:0,36,399 0/1:14,5:19:88:88,0,150 +chr2 132093226 rs181089705 C A 63.54 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.603;DB;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2515;MLEAC=2;MLEAF=0.333;MQ=20.79;MQ0=0;MQRankSum=2.046;QD=1.08;ReadPosRankSum=-2.098;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,1:25:16:16,0,155 0/0:26,0:26:24:0,24,254 0/1:31,3:34:69:86,0,69 ./. +chr2 132359034 rs6430896 A G 74.66 . AC=5;AF=0.833;AN=6;BaseQRankSum=3.060;DB;DP=82;Dels=0.02;FS=5.887;HaplotypeScore=12.7905;MLEAC=4;MLEAF=0.667;MQ=10.73;MQ0=0;MQRankSum=0.964;QD=1.04;ReadPosRankSum=0.796;SB=-3.164e+01 GT:AD:DP:GQ:PL 0/1:20,1:21:19:19,0,25 1/1:19,5:26:6:45,6,0 1/1:18,3:23:6:50,6,0 ./. +chr2 132384395 . C G 86.82 . AC=5;AF=0.625;AN=8;BaseQRankSum=-3.159;DP=98;Dels=0.01;FS=15.613;HaplotypeScore=5.2306;MLEAC=5;MLEAF=0.625;MQ=14.20;MQ0=0;MQRankSum=1.204;QD=1.21;ReadPosRankSum=0.987;SB=30.21 GT:AD:DP:GQ:PL 1/1:22,3:25:6:61,6,0 0/1:21,3:24:27:41,0,27 0/0:25,1:26:3:0,3,27 1/1:17,4:22:3:26,3,0 +chr2 132580379 . G A 63.29 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.041;DP=21;Dels=0.05;FS=9.961;HaplotypeScore=2.3505;MLEAC=4;MLEAF=0.500;MQ=16.84;MQ0=0;MQRankSum=1.776;QD=3.72;ReadPosRankSum=0.306;SB=-1.183e+00 GT:AD:DP:GQ:PL 0/0:4,0:4:3:0,3,36 1/1:1,1:2:3:31,3,0 0/1:6,2:8:23:47,0,23 0/1:4,2:6:27:27,0,36 +chr2 133012085 rs76724860 A G 139.09 . AC=6;AF=1.00;AN=6;BaseQRankSum=3.435;DB;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=9.7092;MLEAC=6;MLEAF=1.00;MQ=12.50;MQ0=0;MQRankSum=3.435;QD=3.66;ReadPosRankSum=2.742;SB=-4.184e+01 GT:AD:DP:GQ:PL ./. 1/1:5,5:10:3:23,3,0 1/1:4,13:17:15:130,15,0 1/1:5,6:11:3:22,3,0 +chr2 133014432 rs112385657 C T 40.34 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.849;DB;DP=18;Dels=0.00;FS=8.625;HaplotypeScore=3.6003;MLEAC=1;MLEAF=0.250;MQ=13.32;MQ0=0;MQRankSum=-1.003;QD=5.76;ReadPosRankSum=-2.700;SB=1.83 GT:AD:DP:GQ:PL ./. 0/1:1,6:7:11:72,0,11 ./. 0/0:3,3:6:3:0,3,26 +chr2 133016872 rs62165022 A G 37.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=2.276;DB;DP=45;Dels=0.04;FS=14.111;HaplotypeScore=0.5784;MLEAC=4;MLEAF=1.00;MQ=7.41;MQ0=0;MQRankSum=-0.656;QD=1.28;ReadPosRankSum=0.270;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,12:13:3:34,3,0 ./. ./. 1/1:4,12:16:3:36,3,0 +chr2 133019039 rs77439077 T G 1129.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=5.474;DB;DP=495;Dels=0.01;FS=26.943;HaplotypeScore=2.9688;MLEAC=5;MLEAF=0.625;MQ=11.60;MQ0=0;MQRankSum=-3.520;QD=2.28;ReadPosRankSum=6.000;SB=-4.582e+02 GT:AD:DP:GQ:PL 0/1:34,77:111:58:194,0,58 0/1:49,71:121:99:219,0,145 0/1:38,98:139:99:270,0,131 1/1:24,96:121:48:492,48,0 +chr2 133019329 rs80194519 A G 46.87 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.574;DB;DP=205;Dels=0.00;FS=1.581;HaplotypeScore=11.1166;MLEAC=2;MLEAF=0.250;MQ=10.93;MQ0=0;MQRankSum=3.257;QD=0.43;ReadPosRankSum=0.559;SB=-4.122e+01 GT:AD:DP:GQ:PL 0/1:51,1:52:17:17,0,101 0/1:53,3:56:70:70,0,128 0/0:58,1:60:6:0,6,65 0/0:36,1:37:9:0,9,91 +chr2 133020402 rs112221181 T G 573.04 . AC=5;AF=0.625;AN=8;BaseQRankSum=-4.833;DB;DP=119;Dels=0.04;FS=34.268;HaplotypeScore=12.3803;MLEAC=5;MLEAF=0.625;MQ=14.97;MQ0=0;MQRankSum=6.268;QD=4.82;ReadPosRankSum=-1.566;SB=-1.586e+02 GT:AD:DP:GQ:PL 0/1:21,10:31:80:208,0,80 0/1:21,7:28:9:110,0,9 0/1:22,9:31:75:103,0,75 1/1:13,11:24:24:197,24,0 +chr2 133020597 rs112202992 G GA 386.32 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.236;DB;DP=142;FS=6.532;HaplotypeScore=34.0640;MLEAC=5;MLEAF=0.625;MQ=12.34;MQ0=0;MQRankSum=0.658;QD=2.72;RPA=1,2;RU=A;ReadPosRankSum=-1.535;SB=-7.325e+01;STR GT:AD:DP:GQ:PL 0/1:17,22:7:22:195,0,22 0/1:21,23:9:99:137,0,104 0/1:16,24:4:33:33,0,75 1/1:9,7:2:6:74,6,0 +chr2 133033445 rs74414029 A G 103.55 . AC=8;AF=1.00;AN=8;BaseQRankSum=-0.055;DB;DP=25;Dels=0.00;FS=2.993;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=12.47;MQ0=0;MQRankSum=2.128;QD=4.14;ReadPosRankSum=1.146;SB=-4.534e+01 GT:AD:DP:GQ:PL 1/1:1,3:4:3:25,3,0 1/1:1,3:4:3:23,3,0 1/1:0,8:8:3:35,3,0 1/1:2,7:9:6:57,6,0 +chr2 133070318 rs2459646 A C 382.99 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.963;DB;DP=45;Dels=0.00;FS=9.519;HaplotypeScore=0.1835;MLEAC=4;MLEAF=0.500;MQ=26.54;MQ0=0;MQRankSum=1.039;QD=8.51;ReadPosRankSum=-0.582;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:8,6:14:99:124,0,165 0/1:9,3:12:74:74,0,122 0/1:7,6:13:38:97,0,38 0/1:1,5:6:7:130,0,7 +chr2 133541444 rs12691829 T C 4384.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=4.310;DB;DP=167;Dels=0.02;FS=2.867;HaplotypeScore=5.2182;MLEAC=7;MLEAF=0.875;MQ=33.63;MQ0=0;MQRankSum=-3.872;QD=26.25;ReadPosRankSum=1.189;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:2,38:41:89:1358,89,0 0/1:27,16:43:99:443,0,836 1/1:3,39:43:91:1432,91,0 1/1:3,34:37:99:1151,99,0 +chr2 135011985 . T C 46.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.968;DP=73;Dels=0.00;FS=27.391;HaplotypeScore=5.4470;MLEAC=3;MLEAF=0.375;MQ=29.71;MQ0=0;MQRankSum=-0.603;QD=0.76;ReadPosRankSum=-0.057;SB=-3.725e-01 GT:AD:DP:GQ:PL 0/1:22,4:26:33:33,0,367 0/1:21,2:23:3:3,0,296 0/0:12,0:12:24:0,24,262 0/1:9,3:12:51:51,0,162 +chr2 135012227 . T G 53.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.283;DP=134;Dels=0.00;FS=64.159;HaplotypeScore=3.6131;MLEAC=2;MLEAF=0.250;MQ=37.12;MQ0=0;MQRankSum=-1.786;QD=0.88;ReadPosRankSum=-0.871;SB=-3.098e+00 GT:AD:DP:GQ:PL 0/1:34,3:37:13:13,0,982 0/0:41,2:43:34:0,34,1319 0/0:27,3:30:2:0,2,766 0/1:19,5:24:80:80,0,593 +chr2 135012257 . G T 193.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.691;DP=112;Dels=0.02;FS=7.190;HaplotypeScore=6.7301;MLEAC=3;MLEAF=0.375;MQ=34.37;MQ0=0;MQRankSum=-3.236;QD=2.13;ReadPosRankSum=1.132;SB=0.211 GT:AD:DP:GQ:PL 0/0:20,1:21:3:0,3,282 0/1:28,7:35:99:115,0,676 0/1:31,3:34:19:19,0,489 0/1:15,5:20:99:101,0,190 +chr2 135076090 rs4954133 C T 1935 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.603;DB;DP=76;Dels=0.00;FS=9.031;HaplotypeScore=3.0602;MLEAC=8;MLEAF=1.00;MQ=31.06;MQ0=0;MQRankSum=4.517;QD=25.46;ReadPosRankSum=-0.497;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,18:20:51:635,51,0 1/1:4,10:14:30:346,30,0 1/1:5,14:19:19:491,19,0 1/1:9,14:23:42:502,42,0 +chr2 135710415 . T C 100.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.783;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=1.3243;MLEAC=1;MLEAF=0.125;MQ=37.24;MQ0=0;MQRankSum=-1.516;QD=1.37;ReadPosRankSum=-0.712;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:48,3:52:18:0,18,1381 0/1:63,10:73:99:136,0,1919 0/0:68,0:68:99:0,177,2288 0/0:21,0:21:57:0,57,693 +chr2 135744869 . C G 134.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.141;DP=212;Dels=0.00;FS=32.299;HaplotypeScore=2.2059;MLEAC=2;MLEAF=0.250;MQ=39.39;MQ0=0;MQRankSum=-1.360;QD=1.66;ReadPosRankSum=0.773;SB=-1.700e+00 GT:AD:DP:GQ:PL 0/1:47,5:52:55:55,0,1177 0/0:60,2:62:75:0,75,1570 0/0:65,4:69:15:0,15,1508 0/1:24,5:29:99:121,0,630 +chr2 135815814 . C A 202.52 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.057;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.6822;MLEAC=3;MLEAF=0.375;MQ=33.83;MQ0=0;MQRankSum=-2.205;QD=2.63;ReadPosRankSum=0.272;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,6:25:99:142,0,475 0/1:21,2:23:17:17,0,469 0/1:24,5:29:86:86,0,460 0/0:4,0:4:9:0,9,98 +chr2 136071270 . C A 65.43 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.233;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.3319;MLEAC=3;MLEAF=0.500;MQ=24.60;MQ0=0;MQRankSum=1.033;QD=1.87;ReadPosRankSum=0.433;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:22:22,0,65 0/1:11,3:15:39:67,0,39 0/1:9,1:10:15:15,0,54 ./. +chr2 136379215 . T A 93.28 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.556;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=7.9537;MLEAC=3;MLEAF=0.750;MQ=16.38;MQ0=0;MQRankSum=1.682;QD=4.24;ReadPosRankSum=-1.220;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,1:4:3:25,3,0 0/1:11,7:18:24:103,0,24 ./. ./. +chr2 136513282 . T G 202.70 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.121;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9536;MLEAC=5;MLEAF=0.625;MQ=33.23;MQ0=0;MQRankSum=-2.670;QD=1.89;ReadPosRankSum=4.000;SB=4.98 GT:AD:DP:GQ:PL 0/1:24,3:30:40:40,0,434 0/1:22,5:30:99:105,0,264 0/1:31,3:37:12:12,0,315 1/1:7,3:10:9:90,9,0 +chr2 136540291 . T C 498.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.892;DP=244;Dels=0.00;FS=160.926;HaplotypeScore=16.0714;MLEAC=4;MLEAF=0.500;MQ=27.85;MQ0=0;MQRankSum=0.191;QD=2.04;ReadPosRankSum=0.833;SB=-3.458e-02 GT:AD:DP:GQ:PL 0/1:58,11:69:99:160,0,1022 0/1:63,11:74:99:198,0,1299 0/1:60,10:70:99:161,0,954 0/1:27,3:30:22:22,0,418 +chr2 136545844 rs1042712 C G 7558.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.937;DB;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=1.2488;MLEAC=8;MLEAF=1.00;MQ=36.00;MQ0=0;MQRankSum=-1.826;QD=31.89;ReadPosRankSum=2.908;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,54:58:99:2031,135,0 1/1:5,46:51:99:1651,132,0 1/1:7,60:68:99:2297,157,0 1/1:15,45:60:99:1579,132,0 +chr2 136552136 . C G 130.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.762;DP=62;Dels=0.00;FS=5.194;HaplotypeScore=5.4785;MLEAC=4;MLEAF=0.500;MQ=27.25;MQ0=0;MQRankSum=-2.816;QD=2.10;ReadPosRankSum=2.477;SB=-1.185e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:43:43,0,217 0/1:12,2:14:9:9,0,179 0/1:12,3:15:48:48,0,166 0/1:10,6:16:72:72,0,194 +chr2 136565919 . T A 1045.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.369;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7405;MLEAC=4;MLEAF=0.500;MQ=35.49;MQ0=0;MQRankSum=1.468;QD=9.09;ReadPosRankSum=4.223;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,10:37:99:318,0,432 0/1:20,11:31:99:328,0,355 0/1:21,11:32:99:344,0,250 0/1:10,5:15:98:98,0,180 +chr2 136566691 . A G 392.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.124;DP=111;Dels=0.03;FS=47.281;HaplotypeScore=9.5952;MLEAC=4;MLEAF=0.500;MQ=25.22;MQ0=0;MQRankSum=-0.647;QD=3.54;ReadPosRankSum=2.262;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,6:30:99:106,0,309 0/1:18,11:29:99:139,0,320 0/1:23,7:31:99:128,0,353 0/1:14,3:18:62:62,0,209 +chr2 136655828 . G A 34.15 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.625;DP=32;Dels=0.03;FS=2.538;HaplotypeScore=3.8436;MLEAC=3;MLEAF=0.375;MQ=25.36;MQ0=0;MQRankSum=-0.484;QD=1.26;ReadPosRankSum=1.147;SB=0.874 GT:AD:DP:GQ:PL 0/0:4,1:5:6:0,6,65 0/1:9,2:11:18:18,0,256 0/1:6,2:8:30:41,0,30 0/1:5,2:7:17:17,0,57 +chr2 137872771 . T G 359.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.495;DP=123;Dels=0.04;FS=27.151;HaplotypeScore=15.8719;MLEAC=4;MLEAF=0.500;MQ=27.71;MQ0=0;MQRankSum=-4.311;QD=2.92;ReadPosRankSum=3.148;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,6:31:74:74,0,537 0/1:25,11:36:99:171,0,323 0/1:24,5:29:92:92,0,389 0/1:16,6:22:65:65,0,185 +chr2 138000226 rs7605259 T C 2811.28 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.109;DB;DP=113;Dels=0.01;FS=18.663;HaplotypeScore=14.6199;MLEAC=8;MLEAF=1.00;MQ=29.68;MQ0=0;MQRankSum=5.023;QD=24.88;ReadPosRankSum=-2.975;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,24:27:66:813,66,0 1/1:9,17:26:6:516,6,0 1/1:5,31:37:62:988,62,0 1/1:7,15:22:42:533,42,0 +chr2 138030271 rs10182152 G A 3583.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.319;DB;DP=124;Dels=0.00;FS=14.548;HaplotypeScore=1.6410;MLEAC=8;MLEAF=1.00;MQ=30.58;MQ0=0;MQRankSum=2.040;QD=28.90;ReadPosRankSum=2.964;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,32:37:93:1109,93,0 1/1:2,37:39:99:1253,108,0 1/1:4,29:33:75:908,75,0 1/1:3,12:15:9:313,9,0 +chr2 141242882 rs112109442 A T 293.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.815;DB;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=3;MLEAF=0.375;MQ=34.17;MQ0=0;MQRankSum=-1.355;QD=6.00;ReadPosRankSum=-0.490;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:52:52,0,208 0/0:23,0:23:66:0,66,804 0/1:24,9:33:99:258,0,517 0/1:3,1:4:27:27,0,67 +chr2 141260507 rs4450541 T C 1143.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.212;DB;DP=115;Dels=0.00;FS=1.261;HaplotypeScore=0.9967;MLEAC=4;MLEAF=0.500;MQ=37.21;MQ0=0;MQRankSum=-3.362;QD=15.67;ReadPosRankSum=1.416;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:1,28:29:47:955,47,0 0/0:42,0:42:99:0,123,1642 0/1:27,7:34:99:187,0,838 0/1:8,2:10:50:50,0,221 +chr2 141260668 rs4444457 A G 1892.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.201;DB;DP=143;Dels=0.01;FS=8.516;HaplotypeScore=1.6635;MLEAC=4;MLEAF=0.500;MQ=36.22;MQ0=0;MQRankSum=-0.700;QD=18.74;ReadPosRankSum=1.766;SB=-3.501e+01 GT:AD:DP:GQ:PL 1/1:5,30:35:90:1147,90,0 0/0:42,0:42:99:0,120,1520 0/1:29,21:50:99:605,0,916 0/1:9,6:15:99:189,0,254 +chr2 141441382 rs10928064 A G 4036.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.359;DB;DP=129;Dels=0.02;FS=12.194;HaplotypeScore=2.8960;MLEAC=8;MLEAF=1.00;MQ=35.38;MQ0=0;MQRankSum=3.258;QD=31.29;ReadPosRankSum=3.003;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,30:34:87:1085,87,0 1/1:4,29:33:84:1089,84,0 1/1:2,29:31:87:1132,87,0 1/1:7,21:28:37:730,37,0 +chr2 141819714 . T A 434.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.711;DP=180;Dels=0.00;FS=90.455;HaplotypeScore=2.8002;MLEAC=4;MLEAF=0.500;MQ=33.52;MQ0=0;MQRankSum=-1.834;QD=2.41;ReadPosRankSum=3.169;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:36,10:47:99:225,0,750 0/1:41,8:49:75:75,0,1115 0/1:45,7:52:99:124,0,911 0/1:26,6:32:53:53,0,722 +chr2 144276967 . T C 43.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.533;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.3992;MLEAC=3;MLEAF=0.375;MQ=31.22;MQ0=0;MQRankSum=-0.959;QD=0.82;ReadPosRankSum=1.030;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:30:30,0,86 0/1:17,2:19:39:47,0,39 0/1:18,1:19:8:8,0,125 0/0:15,0:15:9:0,9,111 +chr2 144699739 rs12618509 C T 396.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.469;DB;DP=71;Dels=0.00;FS=5.676;HaplotypeScore=0.3325;MLEAC=1;MLEAF=0.125;MQ=34.97;MQ0=0;MQRankSum=-1.917;QD=18.00;ReadPosRankSum=0.082;SB=-2.994e+01 GT:AD:DP:GQ:PL 0/1:8,14:22:99:432,0,262 0/0:21,0:21:54:0,54,697 0/0:23,0:23:66:0,66,813 0/0:5,0:5:12:0,12,159 +chr2 148684653 . T G 206.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.131;DP=85;Dels=0.02;FS=0.000;HaplotypeScore=3.1298;MLEAC=3;MLEAF=0.375;MQ=28.71;MQ0=0;MQRankSum=1.850;QD=3.28;ReadPosRankSum=-1.163;SB=0.889 GT:AD:DP:GQ:PL 0/1:19,3:22:84:84,0,158 0/1:27,4:31:78:78,0,381 0/0:20,1:21:6:0,6,257 0/1:6,3:9:28:87,0,28 +chr2 149053901 rs10168750 C T 93.11 . AC=4;AF=1.00;AN=4;DB;DP=10;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=18.19;MQ0=0;QD=15.52;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,3:3:9:84,9,0 1/1:0,3:3:6:44,6,0 ./. +chr2 149221457 . T A 536.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.570;DP=121;Dels=0.01;FS=66.585;HaplotypeScore=1.9463;MLEAC=4;MLEAF=0.500;MQ=31.04;MQ0=0;MQRankSum=-3.162;QD=4.43;ReadPosRankSum=3.583;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,6:35:89:89,0,574 0/1:18,9:27:99:175,0,485 0/1:31,11:42:99:211,0,866 0/1:10,6:16:99:104,0,250 +chr2 149240657 rs11335855 GT G 176.39 . AC=6;AF=0.750;AN=8;BaseQRankSum=-2.039;DB;DP=104;FS=0.000;HaplotypeScore=8.3522;MLEAC=6;MLEAF=0.750;MQ=21.60;MQ0=0;MQRankSum=-0.680;QD=1.70;RPA=13,12;RU=T;ReadPosRankSum=0.113;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:14,9:9:36:36,0,44 1/1:12,11:8:9:63,9,0 1/1:14,9:13:12:106,12,0 0/1:17,10:10:2:23,0,2 +chr2 152267072 rs4664045 T G 609.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.986;DB;DP=58;Dels=0.03;FS=2.960;HaplotypeScore=1.7243;MLEAC=4;MLEAF=0.500;MQ=31.24;MQ0=0;MQRankSum=-0.565;QD=17.93;ReadPosRankSum=1.024;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,10:12:30:344,30,0 0/0:24,0:24:51:0,51,610 0/1:7,6:13:99:172,0,127 0/1:2,5:7:59:142,0,59 +chr2 152325143 . A G 64.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.467;DP=204;Dels=0.00;FS=11.005;HaplotypeScore=57.0252;MLEAC=1;MLEAF=0.125;MQ=27.43;MQ0=0;MQRankSum=-1.089;QD=3.61;ReadPosRankSum=-0.502;SB=0.246 GT:AD:DP:GQ:PL 0/0:59,1:60:50:0,50,897 0/0:58,1:60:49:0,49,867 0/0:64,0:65:90:0,90,1107 0/1:13,4:18:20:101,0,20 +chr2 152364589 rs41270201 G A 1191.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.775;DB;DP=166;Dels=0.01;FS=0.667;HaplotypeScore=3.8856;MLEAC=3;MLEAF=0.375;MQ=34.67;MQ0=0;MQRankSum=-3.592;QD=11.68;ReadPosRankSum=-0.036;SB=-5.170e+02 GT:AD:DP:GQ:PL 0/1:23,22:45:99:578,0,646 0/0:64,0:64:99:0,171,2188 0/1:24,16:40:99:452,0,554 0/1:9,7:16:99:205,0,277 +chr2 152388228 rs60806638 G C 1902.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.115;DB;DP=83;Dels=0.02;FS=6.864;HaplotypeScore=2.1695;MLEAC=7;MLEAF=0.875;MQ=32.20;MQ0=0;MQRankSum=0.144;QD=22.92;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,18:20:54:685,54,0 0/1:16,6:23:99:159,0,455 1/1:5,19:24:57:675,57,0 1/1:2,11:14:33:428,33,0 +chr2 152418660 . G C 296.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.062;DP=416;Dels=0.00;FS=101.196;HaplotypeScore=10.8473;MLEAC=3;MLEAF=0.375;MQ=35.49;MQ0=0;MQRankSum=-4.062;QD=0.93;ReadPosRankSum=-0.989;SB=0.618 GT:AD:DP:GQ:PL 0/1:91,16:108:99:241,0,1964 0/0:91,6:97:15:0,15,1936 0/1:123,11:134:54:54,0,2990 0/1:69,7:76:45:45,0,1594 +chr2 152466728 rs58909595 T C 334.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.510;DB;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.2416;MLEAC=3;MLEAF=0.375;MQ=31.03;MQ0=0;MQRankSum=-0.049;QD=9.05;ReadPosRankSum=0.642;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:48:0,48,538 0/1:9,7:16:99:217,0,217 0/1:13,6:19:99:134,0,378 0/1:1,1:2:27:27,0,33 +chr2 152554080 . A G 401.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.075;DP=132;Dels=0.02;FS=104.936;HaplotypeScore=28.6530;MLEAC=4;MLEAF=0.500;MQ=26.96;MQ0=0;MQRankSum=0.295;QD=3.04;ReadPosRankSum=2.131;SB=1.20 GT:AD:DP:GQ:PL 0/1:26,5:32:99:106,0,394 0/1:32,5:42:99:121,0,327 0/1:29,8:39:99:176,0,238 0/1:14,2:17:41:41,0,80 +chr2 152581280 . G T 78.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.535;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.8171;MLEAC=2;MLEAF=0.250;MQ=30.41;MQ0=0;MQRankSum=-0.888;QD=0.97;ReadPosRankSum=-1.563;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:31,0:32:42:0,42,462 0/1:46,4:51:35:35,0,599 0/0:57,1:60:65:0,65,973 0/1:26,4:30:85:85,0,135 +chr2 153000337 rs12617139 T A 244.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.851;DB;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=0.7437;MLEAC=2;MLEAF=0.250;MQ=34.59;MQ0=0;MQRankSum=-0.851;QD=4.99;ReadPosRankSum=-0.319;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,5:19:99:144,0,354 0/1:23,6:29:99:142,0,725 0/0:21,0:21:60:0,60,748 0/0:6,0:6:18:0,18,227 +chr2 153399320 . C G 471.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.268;DP=151;Dels=0.00;FS=66.386;HaplotypeScore=6.1845;MLEAC=4;MLEAF=0.500;MQ=27.36;MQ0=0;MQRankSum=-0.242;QD=3.12;ReadPosRankSum=-1.081;SB=0.161 GT:AD:DP:GQ:PL 0/1:36,5:41:92:92,0,408 0/1:32,9:41:99:118,0,434 0/1:33,8:41:99:165,0,573 0/1:22,6:28:99:139,0,246 +chr2 153488632 . T G 215.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.653;DP=261;Dels=0.00;FS=113.023;HaplotypeScore=11.6173;MLEAC=3;MLEAF=0.375;MQ=34.95;MQ0=0;MQRankSum=0.972;QD=1.19;ReadPosRankSum=-0.228;SB=0.780 GT:AD:DP:GQ:PL 0/1:71,8:79:99:136,0,1141 0/0:76,2:78:51:0,51,1263 0/1:62,7:69:84:84,0,961 0/1:32,2:34:39:39,0,392 +chr2 154278215 . A T 63.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.025;DP=65;Dels=0.00;FS=14.733;HaplotypeScore=1.4555;MLEAC=3;MLEAF=0.375;MQ=21.80;MQ0=0;MQRankSum=2.200;QD=1.48;ReadPosRankSum=-1.763;SB=-4.577e-02 GT:AD:DP:GQ:PL 0/0:22,0:22:9:0,9,125 0/1:9,2:11:59:60,0,59 0/1:20,1:21:21:21,0,158 0/1:10,1:11:25:25,0,103 +chr2 155098787 . T A 91.94 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.422;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.5809;MLEAC=5;MLEAF=0.625;MQ=27.84;MQ0=0;MQRankSum=1.912;QD=2.30;ReadPosRankSum=2.059;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:49:49,0,53 0/1:8,3:11:47:47,0,59 0/1:11,1:12:9:9,0,147 1/1:5,1:6:3:29,3,0 +chr2 155143185 . T C 36.33 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.196;DP=25;Dels=0.00;FS=9.859;HaplotypeScore=0.7291;MLEAC=4;MLEAF=0.500;MQ=22.96;MQ0=0;MQRankSum=1.110;QD=1.91;ReadPosRankSum=1.763;SB=2.98 GT:AD:DP:GQ:PL 0/1:4,1:5:21:21,0,59 1/1:6,1:7:3:27,3,0 0/1:5,2:7:20:30,0,20 0/0:6,0:6:3:0,3,42 +chr2 155555344 . C G 126.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.643;DP=83;Dels=0.01;FS=24.791;HaplotypeScore=10.6504;MLEAC=3;MLEAF=0.375;MQ=26.00;MQ0=0;MQRankSum=1.781;QD=1.95;ReadPosRankSum=1.233;SB=0.206 GT:AD:DP:GQ:PL 0/0:17,1:18:24:0,24,256 0/1:20,1:21:27:27,0,71 0/1:21,5:26:98:98,0,310 0/1:14,2:17:45:45,0,79 +chr2 157425342 . A T 56.71 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.698;DP=272;Dels=0.00;FS=13.459;HaplotypeScore=4.5678;MLEAC=1;MLEAF=0.125;MQ=35.27;MQ0=0;MQRankSum=-2.502;QD=1.11;ReadPosRankSum=1.339;SB=-6.168e+00 GT:AD:DP:GQ:PL 0/0:69,2:71:67:0,67,1498 0/0:76,3:79:69:0,69,1763 0/0:66,5:71:2:0,2,1470 0/1:45,6:51:92:92,0,854 +chr2 158165818 rs6750370 T C 36.02 . AC=4;AF=1.00;AN=4;DB;DP=4;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=23.62;MQ0=0;QD=18.01;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:43,3,0 ./. ./. 1/1:0,1:1:3:26,3,0 +chr2 158167747 . C T 176.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.304;DP=150;Dels=0.02;FS=42.171;HaplotypeScore=5.7597;MLEAC=2;MLEAF=0.250;MQ=30.59;MQ0=0;MQRankSum=-0.135;QD=3.27;ReadPosRankSum=0.764;SB=0.461 GT:AD:DP:GQ:PL 0/1:28,3:31:37:37,0,512 0/0:47,2:49:57:0,57,1206 0/0:42,4:46:16:0,16,1010 0/1:13,7:21:99:181,0,274 +chr2 158390345 . A G 252.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.110;DP=66;Dels=0.00;FS=14.312;HaplotypeScore=6.0258;MLEAC=4;MLEAF=0.500;MQ=27.29;MQ0=0;MQRankSum=0.500;QD=3.83;ReadPosRankSum=1.476;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:26:26,0,131 0/1:15,5:20:99:121,0,107 0/1:13,6:19:35:135,0,35 0/1:9,1:10:13:13,0,87 +chr2 158991441 . T A 337.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.311;DP=122;Dels=0.00;FS=2.445;HaplotypeScore=3.2475;MLEAC=3;MLEAF=0.375;MQ=32.11;MQ0=0;MQRankSum=-3.458;QD=3.59;ReadPosRankSum=3.923;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,8:30:99:157,0,475 0/0:25,3:28:9:0,9,602 0/1:30,7:38:99:133,0,649 0/1:20,6:26:90:90,0,400 +chr2 159433921 . A G 147.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.121;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=10.2275;MLEAC=4;MLEAF=0.500;MQ=29.57;MQ0=0;MQRankSum=-3.320;QD=2.27;ReadPosRankSum=3.277;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,5:14:99:106,0,176 0/1:9,6:16:43:43,0,91 0/1:16,3:20:18:18,0,304 0/1:10,4:15:23:23,0,214 +chr2 160035741 rs62171129 A G 1169.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.748;DB;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.0483;MLEAC=3;MLEAF=0.375;MQ=42.67;MQ0=0;MQRankSum=-2.250;QD=13.76;ReadPosRankSum=-0.175;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1393 0/1:13,12:26:99:424,0,396 0/1:18,11:29:99:352,0,577 0/1:18,12:30:99:437,0,372 +chr2 160084534 rs2288111 A G 1551.59 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.674;DB;DP=114;Dels=0.01;FS=4.352;HaplotypeScore=4.2177;MLEAC=5;MLEAF=0.625;MQ=33.60;MQ0=0;MQRankSum=0.111;QD=13.61;ReadPosRankSum=2.212;SB=-4.099e+01 GT:AD:DP:GQ:PL 1/1:4,18:22:27:637,27,0 0/1:26,8:34:99:226,0,649 0/1:12,15:27:99:486,0,311 0/1:21,9:30:99:248,0,610 +chr2 160176943 rs174229 A C 1516 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.902;DB;DP=58;Dels=0.00;FS=35.874;HaplotypeScore=0.8523;MLEAC=8;MLEAF=1.00;MQ=30.31;MQ0=0;MQRankSum=3.279;QD=26.14;ReadPosRankSum=2.181;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:2,12:14:36:367,36,0 1/1:3,12:15:36:416,36,0 1/1:3,18:21:51:567,51,0 1/1:2,6:8:18:205,18,0 +chr2 160335001 . A T 473.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.393;DP=60;Dels=0.03;FS=3.647;HaplotypeScore=10.6736;MLEAC=4;MLEAF=0.500;MQ=24.90;MQ0=0;MQRankSum=1.919;QD=7.89;ReadPosRankSum=0.213;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,9:17:25:198,0,25 0/1:11,2:13:38:52,0,38 0/1:11,11:22:43:209,0,43 0/1:3,3:6:29:57,0,29 +chr2 160637324 rs2303551 A G 1086.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.123;DB;DP=107;Dels=0.00;FS=2.590;HaplotypeScore=0.2499;MLEAC=4;MLEAF=0.500;MQ=34.59;MQ0=0;MQRankSum=2.419;QD=15.75;ReadPosRankSum=1.180;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,114,1390 1/1:2,22:24:66:864,66,0 0/1:26,8:34:99:224,0,769 0/1:9,2:11:47:47,0,223 +chr2 160824015 . G C 41.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.374;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=0.250;MQ=32.14;MQ0=0;MQRankSum=-3.703;QD=0.91;ReadPosRankSum=2.446;SB=-3.486e-01 GT:AD:DP:GQ:PL 0/0:39,2:41:65:0,65,1088 0/1:34,3:37:15:15,0,587 0/0:42,2:45:53:0,53,1153 0/1:4,3:8:67:67,0,91 +chr2 160862094 rs2667004 G A 85.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.072;DB;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9228;MLEAC=2;MLEAF=0.250;MQ=32.49;MQ0=0;MQRankSum=-2.148;QD=2.59;ReadPosRankSum=-0.644;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:11:11,0,230 0/1:12,5:18:99:115,0,416 0/0:15,0:15:36:0,36,472 0/0:19,0:19:39:0,39,490 +chr2 162274253 . T C 58.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.298;DP=180;Dels=0.00;FS=28.238;HaplotypeScore=4.2455;MLEAC=3;MLEAF=0.375;MQ=35.79;MQ0=0;MQRankSum=-0.324;QD=0.46;ReadPosRankSum=-1.804;SB=0.279 GT:AD:DP:GQ:PL 0/1:42,4:46:28:28,0,1274 0/1:44,5:50:11:11,0,1261 0/0:51,3:54:32:0,32,1434 0/1:26,4:30:62:62,0,689 +chr2 162903957 . T G 42.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.983;DP=90;Dels=0.02;FS=25.663;HaplotypeScore=20.3840;MLEAC=2;MLEAF=0.250;MQ=29.43;MQ0=0;MQRankSum=-1.210;QD=1.25;ReadPosRankSum=-0.155;SB=-1.903e+00 GT:AD:DP:GQ:PL 0/0:22,0:22:30:0,30,344 0/1:22,3:25:57:57,0,245 0/0:29,3:32:21:0,21,466 0/1:7,1:9:27:27,0,87 +chr2 163695036 . C T 31.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.506;DP=34;Dels=0.00;FS=2.599;HaplotypeScore=3.8752;MLEAC=3;MLEAF=0.375;MQ=23.72;MQ0=0;MQRankSum=-1.422;QD=1.02;ReadPosRankSum=-1.287;SB=-1.305e-01 GT:AD:DP:GQ:PL 0/0:3,0:3:9:0,9,99 0/1:7,3:10:37:37,0,76 0/1:5,2:7:14:14,0,133 0/1:11,3:14:23:23,0,173 +chr2 165551245 . T A 90.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.823;DP=83;Dels=0.00;FS=45.520;HaplotypeScore=4.6651;MLEAC=4;MLEAF=0.500;MQ=28.80;MQ0=0;MQRankSum=-1.766;QD=1.09;ReadPosRankSum=-1.877;SB=-1.293e+00 GT:AD:DP:GQ:PL 0/1:20,4:24:69:69,0,355 0/1:16,2:18:26:26,0,237 0/1:19,2:21:11:11,0,315 0/1:18,2:20:27:27,0,222 +chr2 165557226 . T C 239.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.117;DP=146;Dels=0.01;FS=55.706;HaplotypeScore=6.2905;MLEAC=3;MLEAF=0.375;MQ=33.42;MQ0=0;MQRankSum=-4.286;QD=2.61;ReadPosRankSum=1.774;SB=3.41 GT:AD:DP:GQ:PL 0/1:22,11:33:99:174,0,600 0/1:37,7:44:75:75,0,1070 0/0:49,4:53:57:0,57,1297 0/1:12,2:14:34:34,0,246 +chr2 165796128 . A T 112.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.749;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.3867;MLEAC=3;MLEAF=0.375;MQ=36.41;MQ0=0;MQRankSum=-3.350;QD=1.42;ReadPosRankSum=2.008;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,7:36:99:138,0,668 0/0:37,2:39:77:0,77,1342 0/1:31,4:35:6:6,0,823 0/1:7,1:8:9:9,0,135 +chr2 165954075 . T G 279.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.831;DP=172;Dels=0.00;FS=2.312;HaplotypeScore=3.6008;MLEAC=3;MLEAF=0.375;MQ=35.42;MQ0=0;MQRankSum=-4.383;QD=2.47;ReadPosRankSum=1.651;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,7:37:99:120,0,727 0/1:43,12:55:99:190,0,1018 0/0:55,4:59:12:0,12,1337 0/1:19,2:21:12:12,0,510 +chr2 166769167 . A T 31.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.846;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.2443;MLEAC=2;MLEAF=0.250;MQ=34.55;MQ0=0;MQRankSum=-2.148;QD=0.46;ReadPosRankSum=-1.792;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:48,4:52:36:36,0,878 0/0:45,1:46:74:0,74,1253 0/0:50,3:53:20:0,20,1186 0/1:14,2:16:37:37,0,313 +chr2 167128845 . G T 31.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.054;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.2137;MLEAC=1;MLEAF=0.125;MQ=33.07;MQ0=0;MQRankSum=-1.994;QD=2.13;ReadPosRankSum=0.183;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:39,0:39:69:0,69,752 0/0:49,1:50:61:0,61,910 0/0:34,1:36:37:0,37,596 0/1:12,3:15:68:68,0,141 +chr2 168074781 . C G 35.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.924;DP=153;Dels=0.00;FS=17.730;HaplotypeScore=2.6405;MLEAC=1;MLEAF=0.125;MQ=33.64;MQ0=0;MQRankSum=-0.597;QD=0.61;ReadPosRankSum=0.304;SB=-1.037e+01 GT:AD:DP:GQ:PL 0/1:40,3:44:2:2,0,870 0/0:42,1:43:68:0,68,1188 0/0:52,0:52:99:0,126,1545 0/1:11,3:14:70:70,0,95 +chr2 168986154 rs925846 A G 2731.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.051;DB;DP=248;Dels=0.00;FS=2.977;HaplotypeScore=1.6685;MLEAC=4;MLEAF=0.500;MQ=35.60;MQ0=0;MQRankSum=-5.152;QD=16.46;ReadPosRankSum=1.922;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:6,58:64:99:1956,162,0 0/0:82,0:82:99:0,241,3152 0/1:53,25:78:99:695,0,1714 0/1:19,5:24:99:129,0,608 +chr2 169574390 . A T 36.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.512;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7358;MLEAC=3;MLEAF=0.375;MQ=31.44;MQ0=0;MQRankSum=-0.941;QD=1.48;ReadPosRankSum=-0.380;SB=-1.191e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:47:47,0,280 0/0:20,0:20:33:0,33,367 0/0:20,1:21:1:0,1,195 1/1:3,1:4:3:31,3,0 +chr2 169745987 . C T 346.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.069;DP=88;Dels=0.01;FS=44.625;HaplotypeScore=6.5664;MLEAC=4;MLEAF=0.500;MQ=30.17;MQ0=0;MQRankSum=0.092;QD=3.94;ReadPosRankSum=-0.504;SB=0.074 GT:AD:DP:GQ:PL 0/1:13,5:18:99:140,0,131 0/1:27,6:33:77:77,0,547 0/1:23,5:28:99:99,0,256 0/1:5,3:8:53:73,0,53 +chr2 169869750 . A T 83.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.636;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=16.4200;MLEAC=2;MLEAF=0.250;MQ=31.89;MQ0=0;MQRankSum=-4.408;QD=0.92;ReadPosRankSum=1.717;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:58,8:66:42:42,0,1147 0/0:60,5:65:0:0,0,1205 0/0:67,3:70:81:0,81,1500 0/1:19,6:25:81:81,0,430 +chr2 169996016 . G T 388.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.137;DP=185;Dels=0.00;FS=32.035;HaplotypeScore=2.0784;MLEAC=4;MLEAF=0.500;MQ=37.43;MQ0=0;MQRankSum=-5.323;QD=2.10;ReadPosRankSum=-1.119;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:43,9:52:99:181,0,861 0/1:53,6:59:69:69,0,1366 0/1:44,7:51:80:80,0,970 0/1:18,5:23:99:101,0,363 +chr2 170011029 . T C 68.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.679;DP=212;Dels=0.00;FS=64.577;HaplotypeScore=2.9843;MLEAC=2;MLEAF=0.250;MQ=37.98;MQ0=0;MQRankSum=-3.513;QD=0.56;ReadPosRankSum=0.800;SB=-7.117e-01 GT:AD:DP:GQ:PL 0/0:60,5:65:52:0,52,1977 0/1:55,6:61:18:18,0,1770 0/1:53,9:62:92:92,0,1664 0/0:23,1:24:19:0,19,611 +chr2 170060504 . T C 336.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.423;DP=152;Dels=0.00;FS=42.725;HaplotypeScore=18.1431;MLEAC=4;MLEAF=0.500;MQ=30.36;MQ0=0;MQRankSum=-1.485;QD=2.21;ReadPosRankSum=2.961;SB=-6.966e-02 GT:AD:DP:GQ:PL 0/1:36,9:45:99:112,0,677 0/1:24,9:33:99:214,0,355 0/1:42,6:49:18:18,0,1006 0/1:21,4:25:35:35,0,374 +chr2 170343637 . C A 294.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.478;DP=148;Dels=0.00;FS=22.609;HaplotypeScore=2.4142;MLEAC=4;MLEAF=0.500;MQ=31.76;MQ0=0;MQRankSum=-3.873;QD=1.99;ReadPosRankSum=1.485;SB=-1.233e-02 GT:AD:DP:GQ:PL 0/1:35,7:42:99:119,0,554 0/1:40,4:44:42:42,0,708 0/1:34,9:44:99:138,0,592 0/1:16,2:18:38:38,0,121 +chr2 170360765 rs72885849 G C 295 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.414;DB;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.2235;MLEAC=1;MLEAF=0.125;MQ=38.37;MQ0=0;MQRankSum=-0.653;QD=10.93;ReadPosRankSum=1.471;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,11:27:99:331,0,498 0/0:37,0:37:93:0,93,1257 0/0:33,0:33:93:0,93,1227 0/0:10,0:10:24:0,24,282 +chr2 170393704 . T G 62.48 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.645;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=0.7198;MLEAC=1;MLEAF=0.125;MQ=32.98;MQ0=0;MQRankSum=-0.847;QD=4.81;ReadPosRankSum=1.442;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,2:29:5:0,5,775 0/0:35,1:36:48:0,48,934 0/0:36,2:38:11:0,11,749 0/1:9,4:13:98:98,0,158 +chr2 170403268 . G A 54.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.854;DP=94;Dels=0.02;FS=0.000;HaplotypeScore=5.5633;MLEAC=3;MLEAF=0.375;MQ=25.80;MQ0=0;MQRankSum=-3.489;QD=0.76;ReadPosRankSum=1.059;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,5:25:24:24,0,236 0/0:18,4:22:18:0,18,212 0/1:24,6:30:24:24,0,480 0/1:10,5:15:50:50,0,164 +chr2 170488454 rs3754921 A G 396.43 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.593;DB;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9685;MLEAC=4;MLEAF=0.500;MQ=28.06;MQ0=0;MQRankSum=-2.324;QD=10.71;ReadPosRankSum=-0.979;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,5:11:99:108,0,178 1/1:1,8:9:21:219,21,0 0/1:10,7:17:99:116,0,221 0/0:4,0:4:6:0,6,68 +chr2 170782037 rs1461958 C T 749.58 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.020;DB;DP=35;Dels=0.00;FS=14.044;HaplotypeScore=2.2961;MLEAC=8;MLEAF=1.00;MQ=26.52;MQ0=0;MQRankSum=2.715;QD=21.42;ReadPosRankSum=-0.092;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,8:9:21:241,21,0 1/1:3,9:12:5:276,5,0 1/1:2,5:7:15:172,15,0 1/1:3,4:7:9:99,9,0 +chr2 170934584 rs6433164 C T 40.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=2.598;DB;DP=112;Dels=0.04;FS=8.510;HaplotypeScore=1.7156;MLEAC=4;MLEAF=1.00;MQ=7.02;MQ0=0;MQRankSum=1.959;QD=0.72;ReadPosRankSum=0.128;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:7,27:34:3:25,3,0 ./. ./. 1/1:3,18:21:6:49,6,0 +chr2 171608758 . T A 41.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.321;DP=85;Dels=0.00;FS=23.174;HaplotypeScore=5.2208;MLEAC=3;MLEAF=0.375;MQ=18.63;MQ0=0;MQRankSum=0.940;QD=0.95;ReadPosRankSum=-0.774;SB=-3.043e+00 GT:AD:DP:GQ:PL 0/0:16,1:19:0:0,0,175 0/1:23,3:26:50:50,0,94 0/0:22,0:22:21:0,21,201 0/1:16,2:18:31:31,0,92 +chr2 171704335 . G T 50.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.100;DP=195;Dels=0.00;FS=128.944;HaplotypeScore=8.9293;MLEAC=2;MLEAF=0.250;MQ=37.02;MQ0=0;MQRankSum=-4.870;QD=0.60;ReadPosRankSum=0.644;SB=-4.977e+00 GT:AD:DP:GQ:PL 0/0:57,4:61:27:0,27,1544 0/1:43,5:48:9:9,0,1371 0/0:50,1:51:99:0,117,1673 0/1:29,5:35:81:81,0,521 +chr2 171854345 . G C 2128.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.835;DP=213;Dels=0.00;FS=18.573;HaplotypeScore=12.5024;MLEAC=4;MLEAF=0.500;MQ=28.09;MQ0=0;MQRankSum=2.648;QD=9.99;ReadPosRankSum=6.583;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,34:64:15:891,0,15 0/1:40,21:62:99:543,0,232 0/1:39,27:66:99:651,0,179 0/1:15,5:21:86:86,0,144 +chr2 172186996 . C A 87.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.076;DP=91;Dels=0.01;FS=64.627;HaplotypeScore=8.0525;MLEAC=3;MLEAF=0.375;MQ=33.34;MQ0=0;MQRankSum=-1.718;QD=1.49;ReadPosRankSum=1.099;SB=-3.726e-01 GT:AD:DP:GQ:PL 0/1:22,3:25:44:44,0,511 0/1:22,4:26:71:71,0,519 0/0:31,1:32:63:0,63,754 0/1:5,2:7:16:16,0,102 +chr2 172926211 rs62183852 T G 637.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.926;DB;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=38.13;MQ0=0;MQRankSum=-2.178;QD=14.84;ReadPosRankSum=-0.293;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:22,21:43:99:674,0,576 0/0:49,0:49:99:0,144,1875 0/0:48,0:48:99:0,141,1830 0/0:22,0:22:60:0,60,773 +chr2 172943883 rs144985412 GT G 128.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.000;DB;DP=46;FS=0.000;HaplotypeScore=9.0023;MLEAC=2;MLEAF=0.250;MQ=21.02;MQ0=0;MQRankSum=1.938;QD=4.29;RPA=10,9;RU=T;ReadPosRankSum=-0.504;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:8,1:4:12:0,12,118 0/1:8,4:8:67:89,0,67 0/0:6,0:5:15:0,15,147 0/1:14,3:12:90:90,0,173 +chr2 173339808 rs11895564 G A 1572.80 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.857;DB;DP=76;Dels=0.00;FS=6.482;HaplotypeScore=0.7074;MLEAC=6;MLEAF=0.750;MQ=36.54;MQ0=0;MQRankSum=-0.959;QD=20.69;ReadPosRankSum=0.857;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:14,9:23:99:302,0,480 0/1:14,7:21:99:204,0,410 1/1:1,21:22:63:811,63,0 1/1:2,8:10:24:302,24,0 +chr2 173352009 . A C 35.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.398;DP=111;Dels=0.00;FS=15.840;HaplotypeScore=3.6976;MLEAC=2;MLEAF=0.250;MQ=30.04;MQ0=0;MQRankSum=-0.304;QD=0.87;ReadPosRankSum=1.971;SB=1.40 GT:AD:DP:GQ:PL 0/1:21,2:23:21:21,0,324 0/0:34,1:35:29:0,29,502 0/0:35,0:35:66:0,66,720 0/1:14,3:18:56:56,0,259 +chr2 174081849 . A C 53.09 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.235;DP=141;Dels=0.01;FS=9.417;HaplotypeScore=1.9842;MLEAC=1;MLEAF=0.125;MQ=41.41;MQ0=0;MQRankSum=-1.405;QD=1.47;ReadPosRankSum=0.697;SB=-4.231e+00 GT:AD:DP:GQ:PL 0/0:31,0:31:63:0,63,797 0/0:39,2:41:52:0,52,1000 0/1:30,5:35:89:89,0,766 0/0:31,2:33:11:0,11,676 +chr2 174086285 rs74417392 C T 42.37 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.566;DB;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=29.59;MQ0=0;MQRankSum=-1.708;QD=6.05;ReadPosRankSum=-0.382;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:46:46,0,110 0/0:7,0:7:12:0,12,162 ./. 1/1:1,1:2:3:36,3,0 +chr2 174485398 rs490487 T A 85.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.537;DB;DP=12;Dels=0.00;FS=3.332;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=18.63;MQ0=0;MQRankSum=1.537;QD=9.47;ReadPosRankSum=-1.537;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:3,2:5:6:78,6,0 ./. 1/1:2,1:4:3:41,3,0 +chr2 175304848 . C A 109.40 . AC=2;AF=0.500;AN=4;BaseQRankSum=-1.097;DP=34;Dels=0.00;FS=5.927;HaplotypeScore=1.9022;MLEAC=2;MLEAF=0.500;MQ=27.28;MQ0=0;MQRankSum=-1.485;QD=5.21;ReadPosRankSum=1.485;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,5:10:77:128,0,77 ./. 0/1:10,1:11:16:16,0,142 ./. +chr2 175622695 . C G 164.13 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.266;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.1962;MLEAC=4;MLEAF=0.500;MQ=27.61;MQ0=0;MQRankSum=-1.258;QD=1.93;ReadPosRankSum=2.408;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,5:27:29:29,0,491 0/1:14,4:18:42:42,0,345 0/1:20,1:21:8:8,0,295 0/1:14,5:19:99:127,0,173 +chr2 175712415 . A C 445.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.308;DP=76;Dels=0.00;FS=30.587;HaplotypeScore=3.6155;MLEAC=4;MLEAF=0.500;MQ=30.38;MQ0=0;MQRankSum=-1.961;QD=5.86;ReadPosRankSum=2.691;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,8:23:99:164,0,325 0/1:17,5:22:99:109,0,327 0/1:14,8:22:99:173,0,131 0/1:7,2:9:42:42,0,72 +chr2 176195192 . A C 42.25 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.720;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=4.2768;MLEAC=3;MLEAF=0.750;MQ=21.55;MQ0=0;MQRankSum=-0.720;QD=6.04;ReadPosRankSum=0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:45:45,0,47 ./. 1/1:0,2:2:3:32,3,0 ./. +chr2 177247978 . T C 65.06 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.266;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=7.2838;MLEAC=2;MLEAF=0.250;MQ=32.34;MQ0=0;MQRankSum=-3.424;QD=1.20;ReadPosRankSum=1.923;SB=16.20 GT:AD:DP:GQ:PL 0/1:18,3:22:37:37,0,372 0/1:25,6:31:67:67,0,535 0/0:19,2:23:4:0,4,323 0/0:4,0:5:3:0,3,42 +chr2 178149959 rs115866936 G A 2234.80 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.225;DB;DP=113;Dels=0.00;FS=1.698;HaplotypeScore=0.9666;MLEAC=6;MLEAF=0.750;MQ=34.49;MQ0=0;MQRankSum=-3.885;QD=19.78;ReadPosRankSum=2.976;SB=-7.650e+02 GT:AD:DP:GQ:PL 0/1:12,13:25:99:381,0,408 0/1:24,12:36:99:272,0,804 1/1:3,29:32:62:1042,62,0 1/1:3,17:20:24:586,24,0 +chr2 178883104 rs75997819 A G 44 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.225;DB;DP=88;Dels=0.00;FS=3.689;HaplotypeScore=3.3923;MLEAC=1;MLEAF=0.125;MQ=26.74;MQ0=0;MQRankSum=2.389;QD=2.00;ReadPosRankSum=-1.753;SB=-1.302e+01 GT:AD:DP:GQ:PL 0/1:19,3:22:80:80,0,401 0/0:17,0:18:39:0,39,438 0/0:24,0:24:42:0,42,448 0/0:23,1:24:20:0,20,473 +chr2 178985157 . T A 130.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.826;DP=89;Dels=0.00;FS=4.761;HaplotypeScore=0.7436;MLEAC=3;MLEAF=0.375;MQ=34.09;MQ0=0;MQRankSum=-1.654;QD=1.59;ReadPosRankSum=2.715;SB=-4.871e-01 GT:AD:DP:GQ:PL 0/1:16,4:20:91:91,0,397 0/1:29,3:32:10:10,0,595 0/1:25,5:30:71:71,0,637 0/0:7,0:7:6:0,6,77 +chr2 178990941 rs147830313 CAT C 1656.53 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.096;DB;DP=74;FS=0.000;HaplotypeScore=13.1870;MLEAC=5;MLEAF=0.625;MQ=30.11;MQ0=0;MQRankSum=-2.785;QD=22.39;RPA=2,1;RU=AT;ReadPosRankSum=0.565;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:15,10:24:99:433,0,541 1/1:3,16:17:48:797,48,0 0/1:13,9:19:99:351,0,453 0/1:5,3:7:99:130,0,182 +chr2 179403593 rs2303539 G A 291.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.254;DB;DP=184;Dels=0.00;FS=18.169;HaplotypeScore=8.2225;MLEAC=1;MLEAF=0.125;MQ=32.94;MQ0=0;MQRankSum=-4.544;QD=6.08;ReadPosRankSum=0.065;SB=-1.099e+02 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,144,1817 0/1:29,19:48:99:328,0,818 0/0:55,0:55:99:0,147,1827 0/0:26,0:26:66:0,66,775 +chr2 179431836 . A C 94.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-6.203;DP=343;Dels=0.00;FS=107.091;HaplotypeScore=4.7893;MLEAC=1;MLEAF=0.125;MQ=37.39;MQ0=0;MQRankSum=-4.027;QD=1.98;ReadPosRankSum=0.326;SB=-6.421e+00 GT:AD:DP:GQ:PL 0/0:98,6:104:70:0,70,3265 0/0:94,4:99:99:0,152,3285 0/0:85,6:91:67:0,67,2895 0/1:41,7:48:99:131,0,1152 +chr2 179446945 . T C 122.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.418;DP=275;Dels=0.01;FS=59.207;HaplotypeScore=4.4202;MLEAC=3;MLEAF=0.375;MQ=35.01;MQ0=0;MQRankSum=-0.921;QD=0.65;ReadPosRankSum=-1.206;SB=0.781 GT:AD:DP:GQ:PL 0/0:82,5:87:57:0,57,2264 0/1:61,7:68:45:45,0,1729 0/1:75,9:84:72:72,0,2068 0/1:30,4:34:49:49,0,730 +chr2 179449050 . C G 85.31 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.219;DP=139;Dels=0.03;FS=96.395;HaplotypeScore=35.5447;MLEAC=3;MLEAF=0.375;MQ=23.48;MQ0=0;MQRankSum=-1.506;QD=0.78;ReadPosRankSum=1.834;SB=-1.403e+00 GT:AD:DP:GQ:PL 0/1:31,5:37:31:31,0,411 0/1:27,7:34:73:73,0,298 0/1:30,6:36:24:24,0,473 0/0:26,1:28:10:0,10,284 +chr2 179463937 . G C 389.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.607;DP=296;Dels=0.00;FS=144.358;HaplotypeScore=17.8613;MLEAC=4;MLEAF=0.500;MQ=27.31;MQ0=0;MQRankSum=4.739;QD=1.32;ReadPosRankSum=2.029;SB=-1.540e-01 GT:AD:DP:GQ:PL 0/1:60,10:70:99:165,0,999 0/1:81,8:89:39:39,0,1169 0/1:79,6:85:14:14,0,1280 0/1:42,10:52:99:214,0,486 +chr2 179499577 . C T 49.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.035;DP=196;Dels=0.00;FS=9.010;HaplotypeScore=0.2483;MLEAC=2;MLEAF=0.250;MQ=33.33;MQ0=0;MQRankSum=-3.291;QD=0.59;ReadPosRankSum=0.280;SB=-2.278e+00 GT:AD:DP:GQ:PL 0/0:53,3:56:11:0,11,1159 0/1:46,6:52:79:79,0,985 0/0:55,1:56:75:0,75,1159 0/1:29,3:32:11:11,0,485 +chr2 179514343 . T G 468.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.710;DP=172;Dels=0.00;FS=104.038;HaplotypeScore=7.1266;MLEAC=4;MLEAF=0.500;MQ=31.51;MQ0=0;MQRankSum=-6.132;QD=2.72;ReadPosRankSum=2.226;SB=-1.396e-02 GT:AD:DP:GQ:PL 0/1:33,10:43:99:160,0,402 0/1:44,13:57:99:211,0,661 0/1:46,8:54:99:108,0,942 0/1:14,4:18:32:32,0,289 +chr2 179539043 . C A 233.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.571;DP=142;Dels=0.00;FS=11.485;HaplotypeScore=14.0990;MLEAC=4;MLEAF=0.500;MQ=32.81;MQ0=0;MQRankSum=-1.208;QD=1.65;ReadPosRankSum=2.397;SB=-6.231e-02 GT:AD:DP:GQ:PL 0/1:36,7:43:99:143,0,636 0/1:33,3:36:18:18,0,816 0/1:47,5:52:37:37,0,1104 0/1:7,4:11:78:78,0,105 +chr2 179553542 rs72650027 G T 331.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.017;DB;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6383;MLEAC=2;MLEAF=0.250;MQ=25.87;MQ0=0;MQRankSum=-1.976;QD=7.21;ReadPosRankSum=1.518;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,0:26:72:0,72,801 0/1:13,13:26:99:210,0,321 0/1:11,9:20:99:163,0,192 0/0:5,0:5:12:0,12,102 +chr2 179575553 . T A 717.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.979;DP=211;Dels=0.00;FS=118.208;HaplotypeScore=10.1408;MLEAC=4;MLEAF=0.500;MQ=34.84;MQ0=0;MQRankSum=-4.090;QD=3.40;ReadPosRankSum=0.875;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:49,5:54:71:71,0,1044 0/1:48,10:58:99:162,0,996 0/1:46,9:55:99:151,0,1239 0/1:28,16:44:99:376,0,716 +chr2 179594039 . A G 40.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.954;DP=335;Dels=0.00;FS=30.877;HaplotypeScore=7.2099;MLEAC=1;MLEAF=0.125;MQ=34.87;MQ0=0;MQRankSum=-2.287;QD=0.77;ReadPosRankSum=-0.058;SB=-4.620e+00 GT:AD:DP:GQ:PL 0/0:81,3:84:99:0,104,2008 0/0:85,3:88:99:0,107,2165 0/0:103,7:110:39:0,39,2688 0/1:48,5:53:77:77,0,987 +chr2 179594048 . T G 120.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.868;DP=311;Dels=0.00;FS=144.324;HaplotypeScore=14.2416;MLEAC=2;MLEAF=0.250;MQ=34.08;MQ0=0;MQRankSum=3.031;QD=0.94;ReadPosRankSum=1.742;SB=-1.222e+00 GT:AD:DP:GQ:PL 0/0:78,3:82:58:0,58,1617 0/1:67,9:76:99:144,0,1376 0/0:95,5:100:26:0,26,1889 0/1:48,4:52:18:18,0,1095 +chr2 179611711 rs66677602 C A 302.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.286;DB;DP=209;Dels=0.00;FS=19.521;HaplotypeScore=9.2565;MLEAC=1;MLEAF=0.125;MQ=32.77;MQ0=0;MQRankSum=-0.718;QD=5.41;ReadPosRankSum=0.176;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,129,1617 0/1:41,14:56:99:339,0,812 0/0:65,0:65:99:0,144,1796 0/0:32,0:32:81:0,81,1043 +chr2 179611794 . C T 332.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.445;DP=272;Dels=0.00;FS=162.128;HaplotypeScore=2.9667;MLEAC=3;MLEAF=0.375;MQ=29.41;MQ0=0;MQRankSum=-3.256;QD=1.66;ReadPosRankSum=5.522;SB=0.791 GT:AD:DP:GQ:PL 0/1:60,14:74:99:123,0,1263 0/0:64,8:72:74:0,74,1364 0/1:64,13:77:99:120,0,1130 0/1:42,7:49:99:133,0,478 +chr2 179647546 rs55863869 A G 77.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.446;DB;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=6.3467;MLEAC=1;MLEAF=0.125;MQ=35.10;MQ0=0;MQRankSum=-0.116;QD=3.90;ReadPosRankSum=0.833;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/0:28,0:28:75:0,75,995 0/1:14,5:19:99:114,0,407 0/0:16,0:16:42:0,42,512 0/0:26,0:26:45:0,45,545 +chr2 179656848 . C T 166.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.782;DP=101;Dels=0.04;FS=125.787;HaplotypeScore=9.6378;MLEAC=3;MLEAF=0.375;MQ=27.71;MQ0=0;MQRankSum=-3.341;QD=1.79;ReadPosRankSum=2.968;SB=3.57 GT:AD:DP:GQ:PL 0/1:18,8:26:96:96,0,410 0/1:22,6:28:91:91,0,389 0/1:31,5:36:22:22,0,585 0/0:7,0:7:9:0,9,115 +chr2 179714765 . G T 94.99 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.963;DP=76;Dels=0.01;FS=5.614;HaplotypeScore=8.7035;MLEAC=4;MLEAF=0.500;MQ=25.22;MQ0=0;MQRankSum=-4.940;QD=1.73;ReadPosRankSum=0.757;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,6:20:3:0,3,271 0/1:16,8:24:71:71,0,305 0/1:17,6:23:13:13,0,439 1/1:3,5:8:6:54,6,0 +chr2 179839803 . A G 289.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.791;DP=112;Dels=0.02;FS=60.996;HaplotypeScore=11.6555;MLEAC=4;MLEAF=0.500;MQ=30.59;MQ0=0;MQRankSum=-2.305;QD=2.58;ReadPosRankSum=3.091;SB=-4.089e-01 GT:AD:DP:GQ:PL 0/1:29,7:36:99:153,0,566 0/1:26,7:33:99:120,0,589 0/1:29,5:34:50:50,0,617 0/1:6,1:7:8:8,0,166 +chr2 180835792 rs3768837 T A 5233.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.958;DB;DP=153;Dels=0.02;FS=18.712;HaplotypeScore=2.7180;MLEAC=8;MLEAF=1.00;MQ=37.20;MQ0=0;MQRankSum=2.635;QD=34.20;ReadPosRankSum=2.696;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:3,46:49:99:1737,105,0 1/1:4,41:45:74:1573,74,0 1/1:2,44:47:99:1703,106,0 1/1:3,6:9:18:220,18,0 +chr2 182413602 rs13003064 A T 1493.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.030;DB;DP=129;Dels=0.00;FS=2.809;HaplotypeScore=0.2499;MLEAC=5;MLEAF=0.625;MQ=38.71;MQ0=0;MQRankSum=-3.123;QD=11.58;ReadPosRankSum=1.167;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,20:21:34:748,34,0 0/1:19,16:35:99:532,0,616 0/1:33,5:38:94:94,0,1223 0/1:27,8:35:99:165,0,947 +chr2 182784162 . T A 125.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.563;DP=136;Dels=0.01;FS=43.695;HaplotypeScore=25.0343;MLEAC=3;MLEAF=0.375;MQ=32.70;MQ0=0;MQRankSum=-1.962;QD=1.15;ReadPosRankSum=-3.161;SB=-2.599e+00 GT:AD:DP:GQ:PL 0/1:31,2:33:3:3,0,706 0/1:31,5:37:89:89,0,653 0/1:34,4:38:73:73,0,734 0/0:24,2:26:6:0,6,516 +chr2 183070851 . A G 447.45 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.495;DP=37;Dels=0.03;FS=22.753;HaplotypeScore=5.1955;MLEAC=4;MLEAF=0.500;MQ=27.71;MQ0=0;MQRankSum=0.071;QD=12.09;ReadPosRankSum=2.569;SB=13.76 GT:AD:DP:GQ:PL 0/1:3,9:12:17:223,0,17 0/1:3,2:5:58:58,0,59 0/1:5,7:13:43:139,0,43 1/1:3,2:6:6:71,6,0 +chr2 183106758 rs2568667 T G 1841.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.950;DB;DP=61;Dels=0.03;FS=25.110;HaplotypeScore=2.4562;MLEAC=8;MLEAF=1.00;MQ=35.74;MQ0=0;MQRankSum=3.840;QD=30.18;ReadPosRankSum=0.619;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,11:15:30:376,30,0 1/1:3,16:19:45:625,45,0 1/1:1,17:18:51:719,51,0 1/1:3,4:7:12:160,12,0 +chr2 183584762 . T A 209.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.953;DP=136;Dels=0.00;FS=40.345;HaplotypeScore=5.5445;MLEAC=4;MLEAF=0.500;MQ=29.32;MQ0=0;MQRankSum=-0.152;QD=1.54;ReadPosRankSum=1.335;SB=-2.200e+00 GT:AD:DP:GQ:PL 0/1:27,4:31:73:73,0,361 0/1:27,6:33:88:88,0,512 0/1:48,6:54:88:88,0,792 0/1:17,1:18:1:1,0,256 +chr2 183616694 . G C 965.41 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.908;DP=63;Dels=0.02;FS=20.704;HaplotypeScore=3.8088;MLEAC=6;MLEAF=0.750;MQ=25.97;MQ0=0;MQRankSum=-0.446;QD=15.32;ReadPosRankSum=1.305;SB=0.026 GT:AD:DP:GQ:PL 0/1:9,11:20:63:189,0,63 1/1:2,17:19:48:478,48,0 1/1:3,12:15:24:260,24,0 0/1:4,4:8:10:84,0,10 +chr2 183623784 rs188642734 C T 80.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.581;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=37.68;MQ0=0;MQRankSum=-0.271;QD=4.75;ReadPosRankSum=1.975;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:68:68,0,96 0/0:8,0:8:21:0,21,291 0/1:9,2:11:53:53,0,249 0/0:1,0:1:3:0,3,32 +chr2 186625880 rs10170781 C G 170.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.555;DB;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.3243;MLEAC=1;MLEAF=0.125;MQ=31.15;MQ0=0;MQRankSum=-1.511;QD=11.34;ReadPosRankSum=-0.511;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,8:15:99:206,0,101 0/0:23,0:23:60:0,60,740 0/0:21,0:21:57:0,57,649 0/0:6,0:6:12:0,12,152 +chr2 186669157 . A T 43.49 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.764;DP=188;Dels=0.00;FS=4.407;HaplotypeScore=9.5749;MLEAC=2;MLEAF=0.250;MQ=34.17;MQ0=0;MQRankSum=-2.149;QD=0.72;ReadPosRankSum=3.105;SB=-4.517e+00 GT:AD:DP:GQ:PL 0/0:65,1:66:99:0,113,1565 0/1:44,6:50:76:76,0,1048 0/0:58,4:62:0:0,0,1176 0/1:9,1:10:3:3,0,207 +chr2 187370594 . T G 160.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.979;DP=70;Dels=0.03;FS=0.000;HaplotypeScore=4.0467;MLEAC=3;MLEAF=0.375;MQ=28.26;MQ0=0;MQRankSum=-2.041;QD=2.77;ReadPosRankSum=1.143;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,1:11:9:0,9,101 0/1:20,2:22:47:47,0,183 0/1:19,5:24:72:72,0,215 0/1:6,5:11:81:84,0,81 +chr2 187370673 rs11690758 G C 70.69 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.573;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.4434;MLEAC=2;MLEAF=0.333;MQ=32.96;MQ0=0;MQRankSum=1.683;QD=8.84;ReadPosRankSum=0.573;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:58:69,0,58 0/0:3,0:3:9:0,9,109 1/1:2,1:3:3:41,3,0 ./. +chr2 189899572 rs7420715 T C 977.29 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.646;DB;DP=44;Dels=0.05;FS=0.000;HaplotypeScore=0.9707;MLEAC=8;MLEAF=1.00;MQ=25.45;MQ0=0;MQRankSum=1.040;QD=22.21;ReadPosRankSum=-1.299;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,9:10:24:256,24,0 1/1:0,14:14:30:346,30,0 1/1:1,14:15:36:354,36,0 1/1:0,2:3:6:60,6,0 +chr2 189929354 . C T 46.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.808;DP=94;Dels=0.00;FS=21.664;HaplotypeScore=15.5377;MLEAC=4;MLEAF=0.500;MQ=21.59;MQ0=0;MQRankSum=1.847;QD=0.50;ReadPosRankSum=-1.228;SB=-9.854e-01 GT:AD:DP:GQ:PL 0/1:19,3:22:28:28,0,157 0/1:28,1:29:5:5,0,200 0/1:21,2:23:31:31,0,214 0/1:18,2:20:24:24,0,67 +chr2 190430387 . T G 636.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.246;DP=98;Dels=0.00;FS=15.336;HaplotypeScore=2.7183;MLEAC=4;MLEAF=0.500;MQ=32.56;MQ0=0;MQRankSum=-0.922;QD=6.50;ReadPosRankSum=4.022;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,8:22:99:191,0,124 0/1:21,10:31:99:259,0,108 0/1:24,6:30:99:123,0,112 0/1:10,5:15:15:106,0,15 +chr2 190795009 . A C 45.51 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.433;DP=36;Dels=0.00;FS=5.479;HaplotypeScore=0.9152;MLEAC=4;MLEAF=0.500;MQ=27.06;MQ0=0;MQRankSum=1.299;QD=1.26;ReadPosRankSum=-0.491;SB=-5.196e-01 GT:AD:DP:GQ:PL 0/1:6,2:8:45:49,0,45 0/1:12,1:13:14:14,0,72 0/1:10,1:11:7:7,0,178 0/1:3,1:4:17:17,0,21 +chr2 191364708 rs72907168 G A 971.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.502;DB;DP=164;Dels=0.01;FS=5.193;HaplotypeScore=0.9412;MLEAC=3;MLEAF=0.375;MQ=37.14;MQ0=0;MQRankSum=-3.763;QD=9.26;ReadPosRankSum=0.246;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/0:58,1:59:99:0,122,1942 0/1:30,14:44:99:382,0,1028 0/1:21,14:35:99:423,0,549 0/1:17,8:25:99:210,0,494 +chr2 191905778 . T G 601.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.778;DP=123;Dels=0.00;FS=82.680;HaplotypeScore=5.3093;MLEAC=4;MLEAF=0.500;MQ=31.61;MQ0=0;MQRankSum=-1.450;QD=4.89;ReadPosRankSum=2.908;SB=-1.245e+00 GT:AD:DP:GQ:PL 0/1:20,14:34:99:308,0,392 0/1:28,11:39:99:208,0,589 0/1:27,7:34:99:123,0,564 0/1:13,3:16:4:4,0,298 +chr2 192160875 rs4853575 C T 1102.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.080;DB;DP=273;Dels=0.00;FS=0.674;HaplotypeScore=0.4967;MLEAC=1;MLEAF=0.125;MQ=37.30;MQ0=0;MQRankSum=-1.323;QD=13.96;ReadPosRankSum=1.053;SB=-5.110e+02 GT:AD:DP:GQ:PL 0/0:85,0:85:99:0,232,2940 0/1:44,35:79:99:1139,0,1383 0/0:80,0:80:99:0,229,2932 0/0:29,0:29:84:0,84,1091 +chr2 192250726 rs13018796 G A 8275.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.786;DB;DP=270;Dels=0.00;FS=5.155;HaplotypeScore=14.4009;MLEAC=8;MLEAF=1.00;MQ=33.33;MQ0=0;MQRankSum=-1.303;QD=30.65;ReadPosRankSum=3.932;SB=-3.949e+03 GT:AD:DP:GQ:PL 1/1:5,71:76:99:2442,159,0 1/1:5,59:64:99:1978,116,0 1/1:8,65:73:99:2186,138,0 1/1:3,53:56:99:1669,116,0 +chr2 192280936 . C G 95.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.219;DP=160;Dels=0.01;FS=85.027;HaplotypeScore=11.5637;MLEAC=3;MLEAF=0.375;MQ=30.37;MQ0=0;MQRankSum=-4.990;QD=0.86;ReadPosRankSum=0.238;SB=0.690 GT:AD:DP:GQ:PL 0/1:29,5:34:20:20,0,751 0/1:45,7:52:24:24,0,1165 0/0:45,4:49:44:0,44,1223 0/1:18,6:24:95:95,0,350 +chr2 192746052 . T A 43.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.299;DP=89;Dels=0.00;FS=76.659;HaplotypeScore=2.8892;MLEAC=4;MLEAF=0.500;MQ=32.38;MQ0=0;MQRankSum=-0.579;QD=0.49;ReadPosRankSum=1.736;SB=-1.349e+00 GT:AD:DP:GQ:PL 0/1:21,2:23:18:18,0,459 0/1:18,2:20:26:26,0,361 0/1:27,3:30:27:27,0,637 0/1:14,2:16:15:15,0,314 +chr2 194855686 . C A 35.54 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.155;DP=102;Dels=0.00;FS=8.665;HaplotypeScore=4.1524;MLEAC=1;MLEAF=0.125;MQ=23.17;MQ0=0;MQRankSum=0.775;QD=0.59;ReadPosRankSum=-1.452;SB=-4.355e+00 GT:AD:DP:GQ:PL 0/0:28,0:29:24:0,24,280 0/1:25,3:29:70:70,0,118 0/1:30,1:31:1:1,0,297 0/0:13,0:13:9:0,9,91 +chr2 195052367 rs9808060 C A 31.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.809;DB;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=0.5784;MLEAC=4;MLEAF=1.00;MQ=7.52;MQ0=0;MQRankSum=-0.785;QD=0.82;ReadPosRankSum=0.921;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,12:17:3:32,3,0 ./. ./. 1/1:9,11:20:3:32,3,0 +chr2 196640516 . C A 161.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.566;DP=127;Dels=0.04;FS=29.558;HaplotypeScore=17.4135;MLEAC=3;MLEAF=0.375;MQ=28.38;MQ0=0;MQRankSum=-3.416;QD=1.48;ReadPosRankSum=3.485;SB=0.584 GT:AD:DP:GQ:PL 0/1:25,8:34:80:80,0,586 0/1:22,5:27:94:94,0,382 0/1:38,6:45:31:31,0,651 0/0:15,1:16:27:0,27,289 +chr2 197118597 . A T 33.52 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.286;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.2939;MLEAC=2;MLEAF=0.250;MQ=26.89;MQ0=0;MQRankSum=0.450;QD=1.02;ReadPosRankSum=-0.532;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:16:34:34,0,135 0/0:14,0:14:15:0,15,156 0/0:17,1:18:1:0,1,197 0/1:15,2:17:39:39,0,100 +chr2 197172816 rs2305567 G A 188.59 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.260;DB;DP=30;Dels=0.00;FS=3.160;HaplotypeScore=2.0032;MLEAC=6;MLEAF=0.750;MQ=24.52;MQ0=0;MQRankSum=-2.495;QD=6.29;ReadPosRankSum=-0.026;SB=-4.173e-01 GT:AD:DP:GQ:PL 0/1:8,1:9:2:2,0,244 1/1:3,4:7:9:83,9,0 0/1:6,3:9:33:33,0,138 1/1:1,4:5:12:115,12,0 +chr2 197597443 rs6744752 T C 203.16 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.567;DB;DP=41;Dels=0.00;FS=2.457;HaplotypeScore=0.4338;MLEAC=1;MLEAF=0.125;MQ=27.94;MQ0=0;MQRankSum=1.775;QD=20.32;ReadPosRankSum=0.604;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,7:10:56:239,0,56 0/0:16,0:16:27:0,27,337 0/0:8,0:8:21:0,21,212 0/0:7,0:7:9:0,9,113 +chr2 197636559 . A G 74.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.405;DP=132;Dels=0.00;FS=83.069;HaplotypeScore=1.7121;MLEAC=3;MLEAF=0.375;MQ=36.61;MQ0=0;MQRankSum=-0.160;QD=0.81;ReadPosRankSum=-0.142;SB=0.744 GT:AD:DP:GQ:PL 0/0:38,2:40:35:0,35,1176 0/1:21,3:24:29:29,0,586 0/1:44,5:49:65:65,0,1053 0/1:17,2:19:24:24,0,485 +chr2 197791009 . C A 52.05 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.031;DP=40;Dels=0.03;FS=2.570;HaplotypeScore=1.1085;MLEAC=3;MLEAF=0.500;MQ=21.99;MQ0=0;MQRankSum=1.342;QD=1.63;ReadPosRankSum=0.718;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:10:10,0,162 ./. 0/1:11,1:12:11:11,0,96 0/1:4,3:7:34:69,0,34 +chr2 198263146 rs16865262 T C 471.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.003;DB;DP=187;Dels=0.01;FS=0.000;HaplotypeScore=3.8080;MLEAC=1;MLEAF=0.125;MQ=36.17;MQ0=0;MQRankSum=-0.547;QD=8.91;ReadPosRankSum=1.494;SB=-1.120e-02 GT:AD:DP:GQ:PL 0/1:36,17:53:99:508,0,878 0/0:71,0:71:99:0,199,2595 0/0:50,0:50:99:0,144,1874 0/0:12,0:12:33:0,33,402 +chr2 198498542 . T C 63.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.951;DP=146;Dels=0.00;FS=88.716;HaplotypeScore=7.2717;MLEAC=2;MLEAF=0.250;MQ=32.30;MQ0=0;MQRankSum=-4.286;QD=1.16;ReadPosRankSum=1.978;SB=-5.130e-01 GT:AD:DP:GQ:PL 0/1:31,7:38:77:77,0,797 0/0:39,4:43:72:0,72,1088 0/0:44,4:48:14:0,14,980 0/1:14,3:17:28:28,0,373 +chr2 198571965 . T A 161.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.844;DP=87;Dels=0.02;FS=0.000;HaplotypeScore=6.1469;MLEAC=3;MLEAF=0.375;MQ=25.35;MQ0=0;MQRankSum=-1.733;QD=2.07;ReadPosRankSum=3.864;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,3:31:48:48,0,357 0/1:18,8:26:99:116,0,139 0/1:16,4:20:40:40,0,196 0/0:7,1:8:12:0,12,111 +chr2 200173684 rs10153730 T G 2466.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.255;DB;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.2498;MLEAC=8;MLEAF=1.00;MQ=32.26;MQ0=0;MQRankSum=0.146;QD=31.63;ReadPosRankSum=2.223;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:1,21:22:63:745,63,0 1/1:1,20:21:41:733,41,0 1/1:0,11:11:33:347,33,0 1/1:2,22:24:28:681,28,0 +chr2 200804913 . A T 215.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.556;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.4474;MLEAC=4;MLEAF=0.500;MQ=24.21;MQ0=0;MQRankSum=-1.279;QD=3.07;ReadPosRankSum=3.142;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,8:27:99:163,0,112 0/1:26,3:29:41:41,0,228 0/0:18,1:19:0:0,0,209 0/1:10,4:14:51:51,0,98 +chr2 201473816 . G A 55.26 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.168;DP=124;Dels=0.02;FS=33.698;HaplotypeScore=1.9382;MLEAC=2;MLEAF=0.250;MQ=31.76;MQ0=0;MQRankSum=-2.525;QD=1.02;ReadPosRankSum=0.249;SB=-8.415e-01 GT:AD:DP:GQ:PL 0/0:23,1:24:28:0,28,749 0/1:30,4:34:13:13,0,680 0/0:41,3:44:37:0,37,1171 0/1:15,4:19:83:83,0,372 +chr2 201474078 . A C 350.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.238;DP=96;Dels=0.01;FS=39.423;HaplotypeScore=29.6752;MLEAC=4;MLEAF=0.500;MQ=23.31;MQ0=0;MQRankSum=0.147;QD=3.65;ReadPosRankSum=3.187;SB=-2.277e+01 GT:AD:DP:GQ:PL 0/1:15,9:26:10:154,0,10 0/1:16,8:24:92:92,0,106 0/1:25,6:32:99:102,0,131 0/1:11,2:13:34:45,0,34 +chr2 201478566 . T C 82.34 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.905;DP=97;Dels=0.01;FS=43.318;HaplotypeScore=14.4345;MLEAC=4;MLEAF=0.500;MQ=24.80;MQ0=0;MQRankSum=-1.236;QD=0.85;ReadPosRankSum=0.924;SB=-5.074e-01 GT:AD:DP:GQ:PL 0/1:19,5:24:75:75,0,214 0/1:22,3:26:7:7,0,162 0/1:24,2:27:25:25,0,336 0/1:17,1:19:17:17,0,131 +chr2 201677900 . T G 98.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.122;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.9611;MLEAC=2;MLEAF=0.250;MQ=26.71;MQ0=0;MQRankSum=-2.279;QD=2.01;ReadPosRankSum=3.432;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:20:48:48,0,242 0/0:33,3:36:33:0,33,620 0/1:24,5:29:92:92,0,301 0/0:10,0:10:18:0,18,162 +chr2 201741670 . A C 514.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.409;DP=112;Dels=0.00;FS=65.018;HaplotypeScore=1.8090;MLEAC=4;MLEAF=0.500;MQ=35.33;MQ0=0;MQRankSum=-0.595;QD=4.60;ReadPosRankSum=1.906;SB=-1.104e-01 GT:AD:DP:GQ:PL 0/1:27,7:34:99:189,0,709 0/1:24,10:35:99:240,0,515 0/1:27,6:33:99:113,0,704 0/1:9,1:10:15:15,0,240 +chr2 201758156 rs141375721 T G 70.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.736;DB;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.7393;MLEAC=3;MLEAF=0.375;MQ=31.79;MQ0=0;MQRankSum=-3.818;QD=1.06;ReadPosRankSum=2.389;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,1:28:42:0,42,454 0/1:25,5:30:54:54,0,399 0/1:18,5:23:19:19,0,317 0/1:11,3:14:41:41,0,158 +chr2 201943539 . T A 226.59 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.364;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.4874;MLEAC=5;MLEAF=0.625;MQ=26.01;MQ0=0;MQRankSum=0.949;QD=2.98;ReadPosRankSum=1.779;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,2:21:38:38,0,213 0/1:19,5:24:99:113,0,209 0/1:20,6:26:87:87,0,129 1/1:4,1:5:3:31,3,0 +chr2 202141529 . G A 201.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.760;DP=116;Dels=0.01;FS=17.651;HaplotypeScore=5.6045;MLEAC=4;MLEAF=0.500;MQ=24.21;MQ0=0;MQRankSum=2.638;QD=1.74;ReadPosRankSum=3.631;SB=-4.018e-02 GT:AD:DP:GQ:PL 0/1:23,5:29:49:49,0,236 0/1:29,6:36:90:90,0,227 0/1:24,4:28:87:87,0,184 0/1:21,1:22:18:18,0,152 +chr2 202208805 . G A 58.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.691;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.9145;MLEAC=2;MLEAF=0.250;MQ=25.19;MQ0=0;MQRankSum=-0.949;QD=3.66;ReadPosRankSum=1.608;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:55:55,0,75 0/1:7,2:9:23:44,0,23 0/0:10,1:11:9:0,9,104 0/0:5,0:5:6:0,6,70 +chr2 202211467 . T A 30.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.377;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=21.2911;MLEAC=2;MLEAF=0.250;MQ=34.14;MQ0=0;MQRankSum=-2.596;QD=0.51;ReadPosRankSum=-1.055;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:47,0:48:99:0,135,1762 0/1:29,3:32:10:10,0,803 0/0:31,1:33:44:0,44,752 0/1:23,4:27:61:61,0,637 +chr2 202245244 rs3795966 A G 813.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.524;DB;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.3961;MLEAC=5;MLEAF=0.625;MQ=36.74;MQ0=0;MQRankSum=-2.248;QD=14.53;ReadPosRankSum=0.716;SB=-3.880e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:39:482,39,0 0/1:10,4:14:99:111,0,295 0/1:12,7:19:99:221,0,390 0/1:6,2:8:45:45,0,209 +chr2 202357949 rs2714482 A C 3059 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.600;DB;DP=101;Dels=0.05;FS=5.271;HaplotypeScore=3.1200;MLEAC=8;MLEAF=1.00;MQ=32.09;MQ0=0;MQRankSum=3.341;QD=30.29;ReadPosRankSum=2.308;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:4,22:26:41:767,41,0 1/1:3,32:35:96:1164,96,0 1/1:1,27:28:78:961,78,0 1/1:0,6:7:18:206,18,0 +chr2 202483802 . T TG 635.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.255;DP=98;FS=81.112;HaplotypeScore=52.8218;MLEAC=4;MLEAF=0.500;MQ=29.54;MQ0=0;MQRankSum=0.143;QD=6.49;RPA=1,2;RU=G;ReadPosRankSum=-3.053;SB=-1.474e-03;STR GT:AD:DP:GQ:PL 0/1:11,5:12:99:163,0,250 0/1:14,6:19:99:155,0,523 0/1:27,5:27:99:159,0,688 0/1:17,9:18:99:210,0,313 +chr2 202507274 . G A 46.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.923;DP=81;Dels=0.00;FS=2.369;HaplotypeScore=0.9799;MLEAC=3;MLEAF=0.375;MQ=28.58;MQ0=0;MQRankSum=0.559;QD=0.78;ReadPosRankSum=-0.299;SB=0.717 GT:AD:DP:GQ:PL 0/1:13,2:16:37:37,0,174 0/0:21,1:22:16:0,16,362 0/1:22,2:24:44:44,0,192 0/1:18,1:19:7:7,0,88 +chr2 202514243 . A C 94.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.439;DP=120;Dels=0.03;FS=6.903;HaplotypeScore=20.9420;MLEAC=4;MLEAF=0.500;MQ=29.56;MQ0=0;MQRankSum=-4.146;QD=0.78;ReadPosRankSum=1.930;SB=-2.647e-01 GT:AD:DP:GQ:PL 0/1:22,5:27:29:29,0,596 0/1:24,7:31:81:81,0,466 0/1:25,5:30:9:9,0,549 0/1:24,3:28:17:17,0,561 +chr2 202591157 rs143317076 C T 102 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.137;DB;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.1302;MLEAC=1;MLEAF=0.125;MQ=39.84;MQ0=0;MQRankSum=-2.797;QD=3.09;ReadPosRankSum=-0.998;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,6:33:99:138,0,875 0/0:36,0:37:99:0,105,1458 0/0:37,0:37:99:0,111,1496 0/0:10,0:10:21:0,21,253 +chr2 202593280 rs3219161 G A 689.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.062;DB;DP=215;Dels=0.00;FS=5.706;HaplotypeScore=2.2312;MLEAC=1;MLEAF=0.125;MQ=32.76;MQ0=0;MQRankSum=1.313;QD=13.27;ReadPosRankSum=0.505;SB=-2.580e+02 GT:AD:DP:GQ:PL 0/1:29,23:52:99:726,0,725 0/0:52,0:52:99:0,141,1650 0/0:73,0:74:99:0,207,2443 0/0:37,0:37:99:0,99,1146 +chr2 202755554 . G C 144.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.278;DP=103;Dels=0.02;FS=145.944;HaplotypeScore=8.9284;MLEAC=4;MLEAF=0.500;MQ=35.45;MQ0=0;MQRankSum=-3.659;QD=1.92;ReadPosRankSum=-1.888;SB=-1.614e+00 GT:AD:DP:GQ:PL 0/0:25,2:27:2:0,2,817 0/1:23,7:30:91:91,0,718 0/1:25,4:29:20:20,0,811 0/1:12,3:15:74:74,0,330 +chr2 202899979 . T C 39.97 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.572;DP=10;Dels=0.00;FS=8.751;HaplotypeScore=0.5515;MLEAC=2;MLEAF=0.333;MQ=27.15;MQ0=0;MQRankSum=0.572;QD=13.32;ReadPosRankSum=-1.067;SB=6.79 GT:AD:DP:GQ:PL ./. 1/1:1,2:3:6:78,6,0 0/0:3,0:3:6:0,6,67 0/0:2,0:2:6:0,6,65 +chr2 202939654 rs10221698 T C 2769.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.689;DB;DP=172;Dels=0.02;FS=13.260;HaplotypeScore=6.2608;MLEAC=5;MLEAF=0.625;MQ=36.42;MQ0=0;MQRankSum=-0.060;QD=16.10;ReadPosRankSum=2.590;SB=-7.680e+02 GT:AD:DP:GQ:PL 0/1:27,16:43:99:478,0,802 1/1:1,34:35:66:1181,66,0 0/1:25,25:50:99:833,0,693 0/1:30,11:41:99:323,0,953 +chr2 203147115 . A T 93.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.440;DP=206;Dels=0.00;FS=77.703;HaplotypeScore=4.1487;MLEAC=1;MLEAF=0.125;MQ=35.65;MQ0=0;MQRankSum=-5.339;QD=3.03;ReadPosRankSum=-0.313;SB=-6.721e+00 GT:AD:DP:GQ:PL 0/0:50,4:54:39:0,39,1495 0/0:54,1:55:99:0,106,1748 0/0:60,6:66:41:0,41,1907 0/1:24,7:31:99:130,0,548 +chr2 203164957 . T G 89.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.043;DP=135;Dels=0.01;FS=39.746;HaplotypeScore=2.5743;MLEAC=3;MLEAF=0.375;MQ=29.22;MQ0=0;MQRankSum=-1.575;QD=1.00;ReadPosRankSum=0.737;SB=-6.111e-01 GT:AD:DP:GQ:PL 0/1:31,7:38:87:87,0,663 0/0:40,5:45:11:0,11,822 0/1:31,5:36:39:39,0,695 0/1:14,1:15:5:5,0,163 +chr2 203705380 . C G 60.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.844;DP=136;Dels=0.01;FS=43.908;HaplotypeScore=2.1836;MLEAC=3;MLEAF=0.375;MQ=19.86;MQ0=0;MQRankSum=-2.098;QD=0.62;ReadPosRankSum=0.469;SB=-5.506e-01 GT:AD:DP:GQ:PL 0/1:19,6:25:35:35,0,192 0/1:28,6:34:43:43,0,102 0/0:32,7:39:5:0,5,320 0/1:30,6:37:24:24,0,418 +chr2 203831801 . C T 50.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.975;DP=206;Dels=0.02;FS=44.410;HaplotypeScore=19.6519;MLEAC=1;MLEAF=0.125;MQ=33.84;MQ0=0;MQRankSum=-3.769;QD=0.81;ReadPosRankSum=2.950;SB=-5.292e+00 GT:AD:DP:GQ:PL 0/1:54,7:61:87:87,0,1118 0/0:57,3:60:34:0,34,1288 0/0:55,1:56:75:0,75,1154 0/0:24,0:25:33:0,33,417 +chr2 203880992 rs2351524 T C 1761.02 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.782;DB;DP=53;Dels=0.02;FS=12.304;HaplotypeScore=0.6360;MLEAC=8;MLEAF=1.00;MQ=33.82;MQ0=0;MQRankSum=2.862;QD=33.23;ReadPosRankSum=-0.300;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:45:566,45,0 1/1:1,12:13:36:452,36,0 1/1:0,16:16:48:602,48,0 1/1:2,5:7:15:180,15,0 +chr2 204003295 . T G 52.95 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.474;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=5.9867;MLEAC=4;MLEAF=0.500;MQ=24.54;MQ0=0;MQRankSum=0.339;QD=1.02;ReadPosRankSum=2.596;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,1:13:3:3,0,143 0/1:15,4:19:39:39,0,125 0/1:15,2:18:15:15,0,115 1/1:0,1:1:3:37,3,0 +chr2 204016157 . A T 71.07 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.525;DP=45;Dels=0.04;FS=0.000;HaplotypeScore=2.6487;MLEAC=3;MLEAF=0.375;MQ=30.02;MQ0=0;MQRankSum=-1.075;QD=1.73;ReadPosRankSum=1.275;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:17:17,0,97 0/1:7,3:10:72:72,0,97 0/1:19,2:21:24:24,0,384 0/0:4,0:4:6:0,6,78 +chr2 204082094 . C A 186.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.726;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=0.9482;MLEAC=3;MLEAF=0.375;MQ=37.10;MQ0=0;MQRankSum=-4.469;QD=1.67;ReadPosRankSum=2.553;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,6:38:99:121,0,741 0/0:41,3:44:4:0,4,1206 0/1:43,5:48:41:41,0,1180 0/1:23,3:26:66:66,0,329 +chr2 204090887 rs2351773 C G 3058.08 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.949;DB;DP=94;Dels=0.01;FS=8.151;HaplotypeScore=0.9212;MLEAC=8;MLEAF=1.00;MQ=35.34;MQ0=0;MQRankSum=0.615;QD=32.53;ReadPosRankSum=2.699;SB=-4.208e+02 GT:AD:DP:GQ:PL 1/1:2,24:26:11:826,11,0 1/1:1,25:26:75:960,75,0 1/1:5,24:29:44:901,44,0 1/1:1,11:12:33:410,33,0 +chr2 204111629 . A C 869.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.855;DP=262;Dels=0.01;FS=41.300;HaplotypeScore=4.6746;MLEAC=4;MLEAF=0.500;MQ=35.33;MQ0=0;MQRankSum=-7.276;QD=3.32;ReadPosRankSum=3.841;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:55,7:62:72:72,0,1392 0/1:62,15:77:99:257,0,1451 0/1:55,22:78:99:485,0,1077 0/1:35,7:42:98:98,0,701 +chr2 204732714 rs231775 A G 155.29 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.553;DB;DP=87;Dels=0.00;FS=4.196;HaplotypeScore=6.0704;MLEAC=2;MLEAF=0.250;MQ=30.33;MQ0=0;MQRankSum=-2.181;QD=3.38;ReadPosRankSum=0.117;SB=-1.011e+02 GT:AD:DP:GQ:PL 0/1:19,6:26:63:63,0,635 0/1:12,8:20:6:133,0,6 0/0:22,1:24:29:0,29,617 0/0:15,1:17:7:0,7,281 +chr2 204737483 . C A 62 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.811;DP=148;Dels=0.00;FS=27.926;HaplotypeScore=4.0714;MLEAC=1;MLEAF=0.125;MQ=36.15;MQ0=0;MQRankSum=-2.761;QD=3.26;ReadPosRankSum=-1.409;SB=-4.042e+00 GT:AD:DP:GQ:PL 0/0:38,2:41:26:0,26,967 0/0:45,2:47:38:0,38,1042 0/0:39,2:41:26:0,26,981 0/1:15,4:19:98:98,0,331 +chr2 206057854 rs184418065 A C 291.71 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.115;DB;DP=57;Dels=0.00;FS=8.479;HaplotypeScore=14.4258;MLEAC=7;MLEAF=0.875;MQ=18.00;MQ0=0;MQRankSum=1.967;QD=5.12;ReadPosRankSum=0.182;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:12,6:18:15:133,15,0 1/1:10,5:15:9:95,9,0 0/1:13,5:18:38:56,0,38 1/1:2,3:6:6:51,6,0 +chr2 206165361 . C T 31.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.025;DP=289;Dels=0.01;FS=33.868;HaplotypeScore=4.5546;MLEAC=1;MLEAF=0.125;MQ=29.87;MQ0=0;MQRankSum=2.366;QD=0.50;ReadPosRankSum=-0.242;SB=0.801 GT:AD:DP:GQ:PL 0/0:73,2:75:63:0,63,1305 0/0:66,2:68:68:0,68,1277 0/0:77,2:79:99:0,119,1920 0/1:57,6:63:68:68,0,785 +chr2 206418032 rs6730102 G A 4106.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.767;DB;DP=128;Dels=0.01;FS=13.729;HaplotypeScore=1.7220;MLEAC=8;MLEAF=1.00;MQ=35.14;MQ0=0;MQRankSum=1.176;QD=32.08;ReadPosRankSum=3.113;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,30:32:57:1076,57,0 1/1:4,23:28:37:858,37,0 1/1:3,29:32:87:1107,87,0 1/1:4,31:35:65:1065,65,0 +chr2 206480256 . T G 890.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.749;DP=206;Dels=0.00;FS=171.132;HaplotypeScore=1.2459;MLEAC=4;MLEAF=0.500;MQ=36.94;MQ0=0;MQRankSum=-3.764;QD=4.32;ReadPosRankSum=0.693;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,9:44:99:192,0,955 0/1:37,11:48:99:271,0,980 0/1:56,12:69:99:222,0,1442 0/1:35,10:45:99:248,0,921 +chr2 207008675 . C T 184.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.198;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.8764;MLEAC=3;MLEAF=0.375;MQ=33.95;MQ0=0;MQRankSum=-0.493;QD=2.76;ReadPosRankSum=-4.316;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,4:34:69:69,0,845 0/0:30,1:31:44:0,44,994 0/1:19,4:23:99:108,0,403 0/1:8,2:10:51:51,0,230 +chr2 207172627 rs7582864 A G 5826.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=6.368;DB;DP=291;Dels=0.00;FS=24.590;HaplotypeScore=5.3096;MLEAC=5;MLEAF=0.625;MQ=34.80;MQ0=0;MQRankSum=-0.707;QD=20.02;ReadPosRankSum=3.811;SB=-8.850e+02 GT:AD:DP:GQ:PL 0/1:52,50:102:99:1595,0,1523 1/1:5,73:78:99:2642,156,0 0/1:49,41:90:99:1334,0,1262 0/1:11,10:21:99:255,0,233 +chr2 207175571 . T A 103.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.864;DP=314;Dels=0.00;FS=90.704;HaplotypeScore=31.2531;MLEAC=3;MLEAF=0.375;MQ=32.28;MQ0=0;MQRankSum=-0.052;QD=0.44;ReadPosRankSum=0.907;SB=0.724 GT:AD:DP:GQ:PL 0/1:94,7:101:20:20,0,1944 0/1:73,7:81:71:71,0,1563 0/0:72,3:76:43:0,43,1352 0/1:51,4:56:56:56,0,759 +chr2 207603234 rs2287631 T G 61.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.160;DB;DP=73;Dels=0.00;FS=5.389;HaplotypeScore=0.7393;MLEAC=1;MLEAF=0.125;MQ=36.28;MQ0=0;MQRankSum=-1.883;QD=3.39;ReadPosRankSum=0.461;SB=0.212 GT:AD:DP:GQ:PL 0/1:14,4:18:97:97,0,442 0/0:21,0:21:57:0,57,752 0/0:30,0:30:84:0,84,1073 0/0:4,0:4:12:0,12,156 +chr2 207610900 . G A 51.04 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.493;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=1.9997;MLEAC=3;MLEAF=0.375;MQ=25.67;MQ0=0;MQRankSum=-0.071;QD=2.43;ReadPosRankSum=-0.995;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,1:11:1:0,1,207 0/1:10,1:11:20:20,0,49 0/1:7,3:10:67:69,0,67 0/0:3,0:3:3:0,3,41 +chr2 207814484 . T C 939.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.626;DP=93;Dels=0.00;FS=7.401;HaplotypeScore=7.6131;MLEAC=4;MLEAF=0.500;MQ=30.35;MQ0=0;MQRankSum=-3.548;QD=10.10;ReadPosRankSum=3.924;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,14:24:74:334,0,74 0/1:15,8:23:99:200,0,129 0/1:17,13:30:99:291,0,391 0/1:10,6:16:99:157,0,168 +chr2 208174754 rs4675662 G A 39.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.202;DB;DP=85;Dels=0.00;FS=7.341;HaplotypeScore=0.4999;MLEAC=1;MLEAF=0.125;MQ=41.22;MQ0=0;MQRankSum=-0.415;QD=2.22;ReadPosRankSum=-1.542;SB=-4.354e+01 GT:AD:DP:GQ:PL 0/0:16,0:16:45:0,45,636 0/1:15,3:18:76:76,0,396 0/0:35,1:36:58:0,58,1284 0/0:15,0:15:42:0,42,567 +chr2 209010516 . G T 62.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.299;DP=101;Dels=0.00;FS=29.776;HaplotypeScore=5.0330;MLEAC=4;MLEAF=0.500;MQ=25.40;MQ0=0;MQRankSum=1.329;QD=0.62;ReadPosRankSum=-0.624;SB=-1.278e-01 GT:AD:DP:GQ:PL 0/1:20,2:22:29:29,0,281 0/1:20,1:21:14:14,0,153 0/1:27,2:29:32:32,0,235 0/1:26,3:29:30:30,0,300 +chr2 209010544 . C G 169.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.599;DP=89;Dels=0.02;FS=39.949;HaplotypeScore=6.9681;MLEAC=5;MLEAF=0.625;MQ=18.90;MQ0=0;MQRankSum=0.987;QD=1.91;ReadPosRankSum=2.526;SB=-1.909e-01 GT:AD:DP:GQ:PL 0/1:12,5:17:23:61,0,23 0/1:23,3:26:34:51,0,34 1/1:19,2:21:3:38,3,0 0/1:19,4:23:62:62,0,85 +chr2 209010785 . T G 203.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.884;DP=112;Dels=0.03;FS=125.881;HaplotypeScore=5.3362;MLEAC=4;MLEAF=0.500;MQ=33.97;MQ0=0;MQRankSum=-3.733;QD=1.82;ReadPosRankSum=2.016;SB=-2.175e+00 GT:AD:DP:GQ:PL 0/1:14,4:18:46:46,0,258 0/1:21,9:30:99:110,0,575 0/1:31,4:35:33:33,0,958 0/1:21,5:26:57:57,0,507 +chr2 209116364 . T A 30.41 . AC=1;AF=0.167;AN=6;BaseQRankSum=-0.962;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=9.1172;MLEAC=1;MLEAF=0.167;MQ=21.81;MQ0=0;MQRankSum=-1.302;QD=3.38;ReadPosRankSum=1.529;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,4:9:48:65,0,48 0/0:11,0:11:12:0,12,128 0/0:8,0:8:15:0,15,161 ./. +chr2 209271884 . T G 245.18 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.128;DP=41;Dels=0.05;FS=0.000;HaplotypeScore=1.8792;MLEAC=5;MLEAF=0.625;MQ=24.64;MQ0=0;MQRankSum=1.897;QD=7.66;ReadPosRankSum=-2.154;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,5:9:12:132,12,0 0/0:9,0:9:12:0,12,100 1/1:7,4:11:9:82,9,0 0/1:6,4:10:10:80,0,10 +chr2 210043385 . C A 128.31 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.160;DP=133;Dels=0.00;FS=6.390;HaplotypeScore=1.4784;MLEAC=3;MLEAF=0.375;MQ=26.75;MQ0=0;MQRankSum=-0.047;QD=1.34;ReadPosRankSum=-2.733;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:35,2:37:16:0,16,707 0/1:37,5:42:85:85,0,302 0/1:28,3:31:12:12,0,468 0/1:19,4:23:74:74,0,390 +chr2 210043884 . A C 209.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.230;DP=168;Dels=0.01;FS=158.778;HaplotypeScore=10.7802;MLEAC=3;MLEAF=0.375;MQ=17.67;MQ0=0;MQRankSum=-0.711;QD=1.59;ReadPosRankSum=4.453;SB=-2.512e-01 GT:AD:DP:GQ:PL 0/1:29,12:41:58:58,0,168 0/1:28,14:43:99:128,0,221 0/1:36,11:47:66:66,0,247 0/0:30,5:35:6:0,6,285 +chr2 210517785 rs2254169 C T 1199.29 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.773;DB;DP=36;Dels=0.03;FS=12.175;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=36.52;MQ0=0;MQRankSum=2.301;QD=33.31;ReadPosRankSum=-0.566;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,8:9:24:320,24,0 1/1:2,11:13:33:444,33,0 1/1:1,10:11:30:399,30,0 1/1:0,2:2:6:75,6,0 +chr2 210642087 rs146163378 C T 1576.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.236;DB;DP=189;Dels=0.01;FS=18.891;HaplotypeScore=5.7846;MLEAC=3;MLEAF=0.375;MQ=35.89;MQ0=0;MQRankSum=-1.427;QD=11.59;ReadPosRankSum=2.712;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:25,16:42:99:490,0,762 0/0:50,0:52:99:0,144,1828 0/1:28,23:51:99:691,0,782 0/1:28,15:43:99:439,0,841 +chr2 210786137 rs9288415 G A 976.10 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.261;DB;DP=36;Dels=0.00;FS=25.119;HaplotypeScore=0.3943;MLEAC=8;MLEAF=1.00;MQ=39.06;MQ0=0;MQRankSum=2.261;QD=27.11;ReadPosRankSum=-0.337;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,7:11:21:295,21,0 1/1:3,4:7:12:169,12,0 1/1:3,7:10:21:300,21,0 1/1:2,6:8:18:251,18,0 +chr2 210841694 . G T 47.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.980;DP=102;Dels=0.00;FS=73.305;HaplotypeScore=8.6042;MLEAC=2;MLEAF=0.250;MQ=31.41;MQ0=0;MQRankSum=-1.256;QD=1.06;ReadPosRankSum=-1.996;SB=1.18 GT:AD:DP:GQ:PL 0/1:20,4:24:59:59,0,557 0/0:29,1:30:25:0,25,680 0/0:26,0:27:60:0,60,746 0/1:18,3:21:30:30,0,237 +chr2 211471545 . T G 39.45 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.422;DP=233;Dels=0.01;FS=56.328;HaplotypeScore=7.8361;MLEAC=1;MLEAF=0.125;MQ=35.67;MQ0=0;MQRankSum=-3.735;QD=0.67;ReadPosRankSum=0.444;SB=-4.677e+00 GT:AD:DP:GQ:PL 0/0:52,6:58:5:0,5,1660 0/0:63,3:66:83:0,83,1995 0/1:51,7:58:75:75,0,1390 0/0:45,3:48:12:0,12,1177 +chr2 211539650 rs140578009 G A 683.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.221;DB;DP=98;Dels=0.01;FS=3.651;HaplotypeScore=7.2388;MLEAC=3;MLEAF=0.375;MQ=32.79;MQ0=0;MQRankSum=-0.221;QD=9.63;ReadPosRankSum=0.982;SB=-1.600e+02 GT:AD:DP:GQ:PL 0/0:26,0:27:51:0,51,661 0/1:15,12:27:99:341,0,237 0/1:27,10:37:99:329,0,536 0/1:4,2:6:38:57,0,38 +chr2 212251795 . A G 435.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.074;DP=293;Dels=0.00;FS=68.572;HaplotypeScore=2.9421;MLEAC=4;MLEAF=0.500;MQ=33.95;MQ0=0;MQRankSum=-2.158;QD=1.49;ReadPosRankSum=1.801;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:72,10:82:99:157,0,1580 0/1:67,8:75:99:121,0,1549 0/1:72,8:80:99:117,0,1553 0/1:50,5:55:83:83,0,923 +chr2 212530136 . C G 512.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.244;DP=167;Dels=0.01;FS=77.418;HaplotypeScore=11.0098;MLEAC=4;MLEAF=0.500;MQ=33.98;MQ0=0;MQRankSum=-7.494;QD=3.07;ReadPosRankSum=3.835;SB=-1.254e-02 GT:AD:DP:GQ:PL 0/1:27,16:43:99:277,0,931 0/1:27,10:37:99:169,0,683 0/1:43,8:51:37:37,0,1304 0/1:27,8:35:72:72,0,627 +chr2 212989308 rs6738304 T C 125.67 . AC=6;AF=1.00;AN=6;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=33.40;MQ0=0;QD=25.13;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:78,6,0 1/1:0,1:1:3:42,3,0 1/1:0,1:1:3:41,3,0 ./. +chr2 215839638 . C G 82.28 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.387;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=11.1006;MLEAC=4;MLEAF=0.500;MQ=29.54;MQ0=0;MQRankSum=-3.374;QD=1.16;ReadPosRankSum=-0.558;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,5:20:67:67,0,379 0/1:15,3:18:35:35,0,396 0/1:17,2:19:14:14,0,336 0/1:11,3:14:8:8,0,208 +chr2 215851246 rs7559069 A G 2516.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.470;DB;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.4980;MLEAC=8;MLEAF=1.00;MQ=37.06;MQ0=0;MQRankSum=1.680;QD=34.96;ReadPosRankSum=0.105;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:57:748,57,0 1/1:2,18:20:54:698,54,0 1/1:2,16:18:48:634,48,0 1/1:3,12:15:36:476,36,0 +chr2 215884441 . G T 104.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.386;DP=148;Dels=0.00;FS=74.946;HaplotypeScore=1.6306;MLEAC=3;MLEAF=0.375;MQ=33.91;MQ0=0;MQRankSum=-0.183;QD=0.98;ReadPosRankSum=-1.285;SB=1.16 GT:AD:DP:GQ:PL 0/1:26,6:32:78:78,0,696 0/1:41,3:44:7:7,0,1071 0/0:40,1:41:76:0,76,1168 0/1:27,4:31:62:62,0,783 +chr2 215914248 . G T 33.12 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.852;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.6346;MLEAC=2;MLEAF=0.250;MQ=32.99;MQ0=0;MQRankSum=-0.852;QD=0.92;ReadPosRankSum=-1.042;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,5:22:61:61,0,406 0/0:8,0:8:15:0,15,212 0/1:13,1:14:12:12,0,128 0/0:5,0:5:6:0,6,63 +chr2 216183025 . C T 52.51 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.350;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.6006;MLEAC=3;MLEAF=0.375;MQ=28.82;MQ0=0;MQRankSum=-2.727;QD=0.82;ReadPosRankSum=1.061;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,6:23:60:60,0,318 0/1:24,3:27:29:29,0,508 0/0:19,0:19:24:0,24,284 0/1:13,1:14:5:5,0,276 +chr2 216190020 rs2372536 C G 456.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.024;DB;DP=138;Dels=0.00;FS=3.729;HaplotypeScore=0.7393;MLEAC=2;MLEAF=0.250;MQ=30.66;MQ0=0;MQRankSum=-3.158;QD=6.25;ReadPosRankSum=-0.114;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:22,15:37:99:267,0,551 0/1:23,13:36:99:231,0,661 0/0:48,0:48:99:0,135,1568 0/0:17,0:17:45:0,45,493 +chr2 216214492 rs10498036 T G 144.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.803;DB;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=0.8596;MLEAC=3;MLEAF=0.375;MQ=35.98;MQ0=0;MQRankSum=-2.395;QD=2.44;ReadPosRankSum=0.109;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:21:78:78,0,431 0/0:30,0:30:81:0,81,1098 0/1:23,5:28:99:105,0,723 0/1:7,2:9:1:1,0,202 +chr2 216230390 rs188108747 T C 640.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.839;DB;DP=67;Dels=0.00;FS=2.808;HaplotypeScore=1.2207;MLEAC=3;MLEAF=0.375;MQ=32.35;MQ0=0;MQRankSum=-2.240;QD=12.09;ReadPosRankSum=-0.007;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,7:17:99:193,0,332 0/0:14,0:14:33:0,33,411 0/1:8,8:16:99:215,0,185 0/1:11,9:20:99:276,0,243 +chr2 216269249 . G T 274.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.222;DP=186;Dels=0.00;FS=137.064;HaplotypeScore=16.5029;MLEAC=4;MLEAF=0.500;MQ=31.64;MQ0=0;MQRankSum=-4.533;QD=1.48;ReadPosRankSum=1.541;SB=-4.808e-02 GT:AD:DP:GQ:PL 0/1:43,6:49:23:23,0,936 0/1:36,11:48:99:160,0,691 0/1:39,7:46:23:23,0,883 0/1:35,8:43:99:111,0,671 +chr2 216286967 . C G 95.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.682;DP=221;Dels=0.01;FS=9.031;HaplotypeScore=2.9446;MLEAC=1;MLEAF=0.125;MQ=37.20;MQ0=0;MQRankSum=-0.892;QD=2.23;ReadPosRankSum=-0.394;SB=-1.058e-02 GT:AD:DP:GQ:PL 0/0:52,3:55:57:0,57,1692 0/0:57,1:58:98:0,98,1556 0/0:63,0:63:99:0,156,2012 0/1:35,7:42:99:132,0,885 +chr2 216299281 rs1250246 A C 55.28 . AC=1;AF=0.167;AN=6;BaseQRankSum=-0.352;DB;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.167;MQ=34.49;MQ0=0;MQRankSum=-0.955;QD=9.21;ReadPosRankSum=0.452;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,3:6:84:90,0,84 0/0:9,0:9:24:0,24,314 0/0:6,0:6:18:0,18,247 ./. +chr2 217012968 . C G 574.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.773;DP=117;Dels=0.00;FS=86.871;HaplotypeScore=3.2553;MLEAC=4;MLEAF=0.500;MQ=27.74;MQ0=0;MQRankSum=-2.440;QD=4.91;ReadPosRankSum=2.533;SB=-1.656e+00 GT:AD:DP:GQ:PL 0/1:21,8:29:99:112,0,253 0/1:30,11:41:99:220,0,330 0/1:20,8:28:99:145,0,152 0/1:11,7:19:99:140,0,133 +chr2 217280876 rs71577872 T C 413.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.396;DB;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=3;MLEAF=0.375;MQ=33.85;MQ0=0;MQRankSum=-2.390;QD=9.40;ReadPosRankSum=1.525;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:25,0:25:63:0,63,801 0/1:14,5:19:99:127,0,361 0/1:8,6:14:99:160,0,267 0/1:5,6:11:99:170,0,122 +chr2 217332785 . A C 252.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.914;DP=81;Dels=0.00;FS=2.491;HaplotypeScore=5.5740;MLEAC=4;MLEAF=0.500;MQ=29.07;MQ0=0;MQRankSum=0.148;QD=3.12;ReadPosRankSum=-0.566;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:56:56,0,263 0/1:23,5:28:99:118,0,310 0/1:19,5:24:96:96,0,320 0/1:6,2:8:19:25,0,19 +chr2 217542753 . A T 42.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.830;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.7198;MLEAC=3;MLEAF=0.375;MQ=28.75;MQ0=0;MQRankSum=-1.362;QD=0.75;ReadPosRankSum=-2.083;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:9:0,9,118 0/1:13,3:16:42:42,0,259 0/1:16,1:17:7:7,0,224 0/1:21,3:24:35:35,0,238 +chr2 218705948 rs1000980 T C 296.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.585;DB;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.2080;MLEAC=3;MLEAF=0.375;MQ=30.63;MQ0=0;MQRankSum=-2.022;QD=11.86;ReadPosRankSum=0.200;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,218 1/1:1,7:8:2:235,2,0 0/1:7,3:10:32:32,0,227 0/1:3,4:7:73:73,0,87 +chr2 218749752 . G C 82.72 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.670;DP=114;Dels=0.00;FS=78.000;HaplotypeScore=5.0716;MLEAC=2;MLEAF=0.250;MQ=29.48;MQ0=0;MQRankSum=-1.374;QD=1.45;ReadPosRankSum=1.374;SB=-2.592e+00 GT:AD:DP:GQ:PL 0/1:20,2:22:28:28,0,390 0/1:29,6:35:96:96,0,450 0/0:23,1:24:13:0,13,361 0/0:32,1:33:30:0,30,550 +chr2 219028932 rs16858808 G A 489.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.635;DB;DP=188;Dels=0.01;FS=3.621;HaplotypeScore=0.7381;MLEAC=1;MLEAF=0.125;MQ=39.01;MQ0=0;MQRankSum=-0.126;QD=9.80;ReadPosRankSum=0.600;SB=-1.690e+02 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,129,1688 0/1:33,16:49:99:526,0,1023 0/0:52,0:52:99:0,150,1980 0/0:42,0:42:99:0,123,1539 +chr2 219093571 . G A 76.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.019;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.2707;MLEAC=2;MLEAF=0.250;MQ=38.15;MQ0=0;MQRankSum=-3.030;QD=1.92;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:66:66,0,220 0/1:19,3:22:52:52,0,448 0/0:23,0:23:42:0,42,490 0/0:5,1:6:9:0,9,128 +chr2 219134853 . C G 142.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.742;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.5303;MLEAC=3;MLEAF=0.375;MQ=30.29;MQ0=0;MQRankSum=-1.569;QD=1.44;ReadPosRankSum=-0.844;SB=-7.508e-02 GT:AD:DP:GQ:PL 0/1:33,3:36:17:17,0,575 0/1:34,4:38:56:56,0,528 0/0:45,3:49:23:0,23,925 0/1:19,6:25:99:113,0,333 +chr2 219146803 rs2292553 G A 61.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.480;DB;DP=13;Dels=0.00;FS=4.616;HaplotypeScore=1.9139;MLEAC=4;MLEAF=1.00;MQ=18.26;MQ0=0;MQRankSum=1.733;QD=5.57;ReadPosRankSum=0.480;SB=-2.922e+01 GT:AD:DP:GQ:PL ./. 1/1:2,4:6:3:26,3,0 1/1:1,4:5:6:69,6,0 ./. +chr2 219154781 rs992157 G A 40.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;MQRankSum=1.026;QD=10.19;ReadPosRankSum=0.000;SB=-3.076e+01 GT:AD:DP:GQ:PL ./. ./. 1/1:2,2:4:6:72,6,0 ./. +chr2 219219072 rs4672888 C T 101.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.203;DB;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.3957;MLEAC=1;MLEAF=0.125;MQ=25.86;MQ0=0;MQRankSum=0.236;QD=3.78;ReadPosRankSum=-0.075;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/0:28,0:28:36:0,36,386 0/1:19,8:27:99:138,0,371 0/0:34,0:34:63:0,63,670 0/0:23,0:23:42:0,42,481 +chr2 219229492 . G T 108.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.027;DP=77;Dels=0.04;FS=33.807;HaplotypeScore=13.6740;MLEAC=4;MLEAF=0.500;MQ=27.95;MQ0=0;MQRankSum=-1.608;QD=1.41;ReadPosRankSum=1.281;SB=-1.019e+00 GT:AD:DP:GQ:PL 0/1:12,3:16:39:39,0,208 0/1:11,3:14:75:75,0,133 0/1:20,5:25:31:31,0,326 0/1:15,3:19:5:5,0,249 +chr2 219259485 . T A 200.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.952;DP=98;Dels=0.01;FS=17.785;HaplotypeScore=11.1794;MLEAC=4;MLEAF=0.500;MQ=26.13;MQ0=0;MQRankSum=-0.325;QD=2.05;ReadPosRankSum=-1.455;SB=-6.510e-02 GT:AD:DP:GQ:PL 0/1:17,5:22:99:119,0,196 0/1:25,3:28:23:23,0,402 0/1:22,3:25:19:19,0,378 0/1:16,6:22:82:82,0,156 +chr2 219288899 rs3731866 C T 123.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.268;DB;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=32.21;MQ0=0;MQRankSum=-1.675;QD=10.33;ReadPosRankSum=-1.300;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,7:12:99:160,0,131 0/0:11,0:11:33:0,33,412 0/0:13,0:13:36:0,36,418 0/0:10,0:10:27:0,27,358 +chr2 219501280 . C T 98.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.846;DP=79;Dels=0.00;FS=7.484;HaplotypeScore=3.0749;MLEAC=3;MLEAF=0.375;MQ=25.61;MQ0=0;MQRankSum=0.710;QD=1.65;ReadPosRankSum=0.237;SB=0.095 GT:AD:DP:GQ:PL 0/1:21,2:23:30:30,0,293 0/1:15,4:19:84:84,0,168 0/0:18,0:19:21:0,21,215 0/1:16,2:18:28:28,0,194 +chr2 219508372 rs3770213 A T 701.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=4.463;DB;DP=266;Dels=0.00;FS=1.599;HaplotypeScore=10.5890;MLEAC=1;MLEAF=0.125;MQ=28.28;MQ0=0;MQRankSum=0.251;QD=11.32;ReadPosRankSum=0.338;SB=-2.810e+02 GT:AD:DP:GQ:PL 0/1:33,29:62:99:738,0,669 0/0:70,0:70:99:0,159,1812 0/0:66,0:67:99:0,162,1800 0/0:67,0:67:99:0,177,1920 +chr2 219528935 . AGG A 355.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.018;DP=115;FS=24.052;HaplotypeScore=55.4546;MLEAC=3;MLEAF=0.375;MQ=19.29;MQ0=0;MQRankSum=-0.865;QD=4.24;ReadPosRankSum=1.077;SB=-2.915e+00 GT:AD:DP:GQ:PL 0/1:20,4:8:27:27,0,156 0/0:29,0:13:22:0,22,330 0/1:20,3:12:88:88,0,212 0/1:28,6:17:99:293,0,241 +chr2 219617782 . A G 48.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.395;DP=166;Dels=0.00;FS=29.681;HaplotypeScore=27.2161;MLEAC=3;MLEAF=0.375;MQ=25.64;MQ0=0;MQRankSum=-2.487;QD=0.40;ReadPosRankSum=3.221;SB=2.16 GT:AD:DP:GQ:PL 0/0:39,4:43:21:0,21,466 0/1:43,6:49:21:21,0,472 0/1:36,4:40:50:50,0,393 0/1:31,3:34:21:21,0,258 +chr2 219617790 . A C 54.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.716;DP=162;Dels=0.03;FS=16.604;HaplotypeScore=34.7663;MLEAC=2;MLEAF=0.250;MQ=25.83;MQ0=0;MQRankSum=-3.700;QD=0.68;ReadPosRankSum=1.955;SB=-2.072e-02 GT:AD:DP:GQ:PL 0/0:38,3:41:72:0,72,846 0/1:34,9:43:32:32,0,532 0/0:36,3:40:54:0,54,620 0/1:29,4:33:64:64,0,344 +chr2 219647108 . T G 119.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.101;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=1.3639;MLEAC=3;MLEAF=0.375;MQ=33.57;MQ0=0;MQRankSum=-2.826;QD=3.00;ReadPosRankSum=-1.203;SB=-6.666e-03 GT:AD:DP:GQ:PL 0/1:9,2:11:22:22,0,112 0/1:14,3:17:64:64,0,319 0/0:19,0:19:30:0,30,378 0/1:8,3:11:77:77,0,169 +chr2 219692527 rs11385903 G GC 781.34 . AC=8;AF=1.00;AN=8;DB;DP=26;FS=0.000;HaplotypeScore=0.7423;MLEAC=8;MLEAF=1.00;MQ=30.29;MQ0=0;QD=30.05;RPA=3,4;RU=C;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:2,8:9:24:315,24,0 1/1:3,7:7:21:276,21,0 1/1:1,1:2:6:80,6,0 1/1:0,4:4:12:158,12,0 +chr2 219696158 . C G 79.04 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.800;DP=22;Dels=0.00;FS=5.880;HaplotypeScore=1.8525;MLEAC=4;MLEAF=0.500;MQ=22.85;MQ0=0;MQRankSum=0.133;QD=4.65;ReadPosRankSum=-1.067;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,64 1/1:3,1:4:3:31,3,0 0/1:9,3:12:67:67,0,72 1/1:0,1:1:3:24,3,0 +chr2 219895944 . G T 112.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.765;DP=37;Dels=0.00;FS=16.163;HaplotypeScore=0.4314;MLEAC=4;MLEAF=0.500;MQ=25.89;MQ0=0;MQRankSum=1.520;QD=3.04;ReadPosRankSum=-1.520;SB=-3.019e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:66:66,0,182 0/1:6,1:7:20:20,0,66 0/1:5,1:6:23:23,0,96 0/1:10,2:12:24:46,0,24 +chr2 220044888 . G C 267.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.791;DP=242;Dels=0.00;FS=93.496;HaplotypeScore=15.8247;MLEAC=4;MLEAF=0.500;MQ=31.45;MQ0=0;MQRankSum=-2.958;QD=1.11;ReadPosRankSum=-1.054;SB=-1.227e-02 GT:AD:DP:GQ:PL 0/1:50,6:56:46:46,0,1167 0/1:65,8:73:40:40,0,1349 0/1:55,8:63:99:118,0,1205 0/1:43,7:50:99:106,0,769 +chr2 220044899 . G C 70.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.911;DP=208;Dels=0.01;FS=95.155;HaplotypeScore=22.8450;MLEAC=1;MLEAF=0.125;MQ=31.76;MQ0=0;MQRankSum=-4.374;QD=1.56;ReadPosRankSum=-2.191;SB=-6.442e+00 GT:AD:DP:GQ:PL 0/1:38,7:45:99:106,0,940 0/0:52,7:59:24:0,24,1331 0/0:53,3:56:51:0,51,1307 0/0:42,4:46:18:0,18,943 +chr2 220045979 . T G 482.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.629;DP=131;Dels=0.00;FS=39.955;HaplotypeScore=4.7910;MLEAC=4;MLEAF=0.500;MQ=32.14;MQ0=0;MQRankSum=-3.980;QD=3.68;ReadPosRankSum=1.038;SB=-1.296e-02 GT:AD:DP:GQ:PL 0/1:31,4:35:35:35,0,977 0/1:16,9:25:99:183,0,335 0/1:22,10:32:99:208,0,471 0/1:33,6:39:99:99,0,722 +chr2 220046823 . C T 637.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.542;DP=261;Dels=0.00;FS=255.011;HaplotypeScore=9.7016;MLEAC=4;MLEAF=0.500;MQ=32.27;MQ0=0;MQRankSum=-0.557;QD=2.44;ReadPosRankSum=1.790;SB=-1.127e-02 GT:AD:DP:GQ:PL 0/1:64,11:75:99:173,0,1395 0/1:51,11:62:99:241,0,1086 0/1:56,8:64:99:105,0,1240 0/1:49,11:60:99:161,0,1131 +chr2 220086951 . T C 270.91 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.100;DP=75;Dels=0.01;FS=86.592;HaplotypeScore=6.8490;MLEAC=4;MLEAF=0.500;MQ=22.59;MQ0=0;MQRankSum=-1.588;QD=3.61;ReadPosRankSum=0.023;SB=-2.717e+00 GT:AD:DP:GQ:PL 0/1:8,5:14:52:52,0,120 0/1:8,7:15:8:105,0,8 0/1:19,6:25:95:95,0,281 0/1:13,7:20:61:61,0,143 +chr2 220111636 . G C 31.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.776;DP=68;Dels=0.00;FS=5.104;HaplotypeScore=0.9952;MLEAC=3;MLEAF=0.375;MQ=36.83;MQ0=0;MQRankSum=0.420;QD=0.58;ReadPosRankSum=-1.197;SB=0.679 GT:AD:DP:GQ:PL 0/1:14,1:15:16:16,0,231 0/1:20,2:22:27:27,0,481 0/0:14,0:14:12:0,12,147 0/1:15,2:17:31:31,0,305 +chr2 220167123 . A C 30.51 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.362;DP=31;Dels=0.00;FS=5.310;HaplotypeScore=4.6105;MLEAC=3;MLEAF=0.375;MQ=25.29;MQ0=0;MQRankSum=-0.757;QD=1.13;ReadPosRankSum=1.422;SB=-2.830e-01 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,85 0/1:8,3:11:25:25,0,118 0/1:6,1:7:10:10,0,85 0/1:6,3:9:37:37,0,52 +chr2 220172605 . A T 41.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.171;DP=127;Dels=0.02;FS=0.000;HaplotypeScore=4.4887;MLEAC=1;MLEAF=0.125;MQ=31.11;MQ0=0;MQRankSum=-1.161;QD=1.27;ReadPosRankSum=1.161;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/0:24,1:25:33:0,33,628 0/0:34,0:34:57:0,57,696 0/0:32,1:33:58:0,58,821 0/1:28,5:33:78:78,0,534 +chr2 220195446 rs6707009 C G 334.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.016;DB;DP=51;Dels=0.00;FS=1.517;HaplotypeScore=0.4468;MLEAC=3;MLEAF=0.375;MQ=31.05;MQ0=0;MQRankSum=-0.296;QD=8.81;ReadPosRankSum=0.254;SB=-3.400e+01 GT:AD:DP:GQ:PL 0/1:5,6:11:99:159,0,123 0/0:13,0:13:39:0,39,458 0/1:11,4:15:76:76,0,346 0/1:7,5:12:99:143,0,112 +chr2 220246162 . G A 767.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.262;DP=271;Dels=0.00;FS=186.956;HaplotypeScore=21.6133;MLEAC=4;MLEAF=0.500;MQ=25.72;MQ0=0;MQRankSum=0.917;QD=2.83;ReadPosRankSum=1.205;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:54,12:66:99:168,0,888 0/1:57,13:70:99:178,0,780 0/1:51,17:68:99:375,0,817 0/1:58,9:67:89:89,0,656 +chr2 220251178 rs2271457 T C 3353.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.929;DB;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.6024;MLEAC=8;MLEAF=1.00;MQ=33.09;MQ0=0;MQRankSum=0.153;QD=31.63;ReadPosRankSum=2.766;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:1,24:25:69:893,69,0 1/1:6,25:31:45:837,45,0 1/1:1,24:25:69:828,69,0 1/1:2,23:25:37:795,37,0 +chr2 220332142 . T A 35.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.694;DP=86;Dels=0.00;FS=5.337;HaplotypeScore=0.7078;MLEAC=1;MLEAF=0.125;MQ=36.96;MQ0=0;MQRankSum=-0.053;QD=2.00;ReadPosRankSum=-0.213;SB=7.889e-04 GT:AD:DP:GQ:PL 0/0:23,0:24:51:0,51,644 0/0:18,0:18:36:0,36,481 0/0:26,0:26:48:0,48,576 0/1:15,3:18:72:72,0,375 +chr2 220356611 . C G 57.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.012;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.8541;MLEAC=3;MLEAF=0.375;MQ=23.50;MQ0=0;MQRankSum=-2.053;QD=1.92;ReadPosRankSum=3.151;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:53:53,0,107 0/1:5,2:7:17:17,0,124 0/1:8,4:12:30:30,0,90 0/0:6,1:7:9:0,9,82 +chr2 220402477 . T C 83.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.992;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.5679;MLEAC=3;MLEAF=0.375;MQ=29.51;MQ0=0;MQRankSum=-1.399;QD=2.70;ReadPosRankSum=0.076;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:9:0,9,101 0/1:8,2:10:16:16,0,125 0/1:6,3:9:49:49,0,131 0/1:9,3:12:61:61,0,141 +chr2 220406944 rs7581251 G A 122.67 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.731;DB;DP=5;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=32.71;MQ0=0;MQRankSum=0.731;QD=24.53;ReadPosRankSum=-0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:78,6,0 ./. 1/1:1,1:2:3:41,3,0 1/1:0,1:1:3:39,3,0 +chr2 220435034 rs10180675 A G 354.84 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.267;DB;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.8707;MLEAC=7;MLEAF=0.875;MQ=27.79;MQ0=0;MQRankSum=2.957;QD=16.90;ReadPosRankSum=-1.479;SB=-1.957e+02 GT:AD:DP:GQ:PL 1/1:3,3:6:6:67,6,0 0/1:2,2:5:20:37,0,20 1/1:2,3:5:9:111,9,0 1/1:0,5:5:15:183,15,0 +chr2 220466199 rs620698 G T 1576.04 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.045;DB;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=5.4585;MLEAC=8;MLEAF=1.00;MQ=28.30;MQ0=0;MQRankSum=-0.304;QD=24.25;ReadPosRankSum=0.385;SB=-3.901e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:33:371,33,0 1/1:2,13:15:30:371,30,0 1/1:1,15:16:13:354,13,0 1/1:1,17:18:45:519,45,0 +chr2 220473355 rs673951 G A 902.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.968;DB;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=2.7401;MLEAC=4;MLEAF=0.500;MQ=32.22;MQ0=0;MQRankSum=0.493;QD=12.03;ReadPosRankSum=-1.207;SB=-3.660e+02 GT:AD:DP:GQ:PL 0/1:6,8:14:99:263,0,103 0/1:14,5:19:99:147,0,365 0/1:14,14:28:99:436,0,409 0/1:9,4:13:99:99,0,153 +chr2 222301357 rs3213844 T C 4206.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.576;DB;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=1.9720;MLEAC=7;MLEAF=0.875;MQ=36.28;MQ0=0;MQRankSum=-2.371;QD=30.04;ReadPosRankSum=1.688;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,16:33:99:519,0,515 1/1:3,34:37:66:1317,66,0 1/1:1,38:39:99:1407,111,0 1/1:4,26:30:58:963,58,0 +chr2 223793480 rs1550420 C T 750.83 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.378;DB;DP=35;Dels=0.00;FS=5.051;HaplotypeScore=0.2489;MLEAC=7;MLEAF=0.875;MQ=32.82;MQ0=0;MQRankSum=1.199;QD=21.45;ReadPosRankSum=0.671;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,5:15:99:156,0,197 1/1:2,9:11:27:334,27,0 1/1:0,7:7:21:265,21,0 1/1:1,1:2:3:39,3,0 +chr2 224263028 rs11679803 A G 390.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.660;DB;DP=74;Dels=0.00;FS=4.982;HaplotypeScore=0.2416;MLEAC=3;MLEAF=0.375;MQ=22.51;MQ0=0;MQRankSum=2.986;QD=7.97;ReadPosRankSum=-0.446;SB=-5.944e+00 GT:AD:DP:GQ:PL 0/1:10,8:18:50:150,0,50 0/0:25,0:25:33:0,33,347 0/1:15,4:19:99:102,0,133 0/1:5,7:12:1:181,0,1 +chr2 224569811 rs16865135 G A 793.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.103;DB;DP=120;Dels=0.01;FS=1.605;HaplotypeScore=1.1988;MLEAC=3;MLEAF=0.375;MQ=28.06;MQ0=0;MQRankSum=-0.929;QD=9.12;ReadPosRankSum=0.070;SB=-2.390e+02 GT:AD:DP:GQ:PL 0/1:11,11:22:99:218,0,197 0/0:33,0:33:60:0,60,722 0/1:18,21:39:99:335,0,420 0/1:11,14:25:99:284,0,208 +chr2 224842381 . C G 447.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.599;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=6.5852;MLEAC=4;MLEAF=0.500;MQ=30.00;MQ0=0;MQRankSum=1.062;QD=4.18;ReadPosRankSum=0.200;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,8:35:99:199,0,202 0/1:25,7:32:99:161,0,353 0/1:20,3:24:59:59,0,128 0/1:11,4:15:71:71,0,137 +chr2 225664780 . A T 36.12 . AC=1;AF=0.167;AN=6;BaseQRankSum=-2.238;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=9.0791;MLEAC=1;MLEAF=0.167;MQ=15.46;MQ0=0;MQRankSum=1.079;QD=2.41;ReadPosRankSum=-1.639;SB=7.97 GT:AD:DP:GQ:PL 0/1:11,4:15:21:70,0,21 0/0:15,3:18:3:0,3,38 0/0:14,0:15:15:0,15,129 ./. +chr2 225738666 . T G 509.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.566;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=3.0777;MLEAC=4;MLEAF=0.500;MQ=34.45;MQ0=0;MQRankSum=-5.475;QD=2.27;ReadPosRankSum=5.985;SB=-1.205e-02 GT:AD:DP:GQ:PL 0/1:55,6:61:39:39,0,1380 0/1:58,14:73:99:233,0,1493 0/1:51,10:61:99:126,0,1236 0/1:21,7:29:99:154,0,488 +chr2 225740730 . G A 146.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.917;DP=158;Dels=0.00;FS=11.527;HaplotypeScore=8.9998;MLEAC=3;MLEAF=0.375;MQ=31.08;MQ0=0;MQRankSum=-4.778;QD=1.16;ReadPosRankSum=4.120;SB=0.348 GT:AD:DP:GQ:PL 0/1:34,6:40:63:63,0,693 0/1:27,8:35:88:88,0,482 0/1:44,6:51:38:38,0,920 0/0:30,2:32:11:0,11,618 +chr2 227912236 . C A 161.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.912;DP=99;Dels=0.01;FS=14.141;HaplotypeScore=11.6278;MLEAC=3;MLEAF=0.375;MQ=27.41;MQ0=0;MQRankSum=-2.074;QD=2.12;ReadPosRankSum=1.041;SB=-4.830e+01 GT:AD:DP:GQ:PL 0/1:22,7:29:99:109,0,148 0/0:21,2:23:5:0,5,254 0/1:27,3:30:22:22,0,342 0/1:13,3:16:72:72,0,103 +chr2 227968636 . A C 591.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.094;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3820;MLEAC=4;MLEAF=0.500;MQ=34.94;MQ0=0;MQRankSum=-2.146;QD=8.70;ReadPosRankSum=3.962;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,5:15:99:117,0,166 0/1:14,9:23:99:259,0,226 0/1:14,8:23:99:228,0,138 0/1:6,1:7:30:30,0,57 +chr2 227974122 . T G 178.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.203;DP=76;Dels=0.03;FS=52.440;HaplotypeScore=14.7343;MLEAC=4;MLEAF=0.500;MQ=29.51;MQ0=0;MQRankSum=-1.752;QD=2.35;ReadPosRankSum=-0.291;SB=1.493e-03 GT:AD:DP:GQ:PL 0/1:18,3:22:64:64,0,319 0/1:13,3:17:54:54,0,197 0/1:14,3:17:24:24,0,242 0/1:14,4:18:79:79,0,323 +chr2 228111444 . C G 105.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.496;DP=155;Dels=0.01;FS=62.726;HaplotypeScore=19.1334;MLEAC=2;MLEAF=0.250;MQ=29.98;MQ0=0;MQRankSum=-1.826;QD=1.21;ReadPosRankSum=1.463;SB=-2.005e+00 GT:AD:DP:GQ:PL 0/1:33,7:41:99:101,0,465 0/0:38,2:40:25:0,25,843 0/1:42,4:46:45:45,0,678 0/0:25,1:26:4:0,4,408 +chr2 228135554 . G T 41.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.960;DP=143;Dels=0.01;FS=24.037;HaplotypeScore=2.5188;MLEAC=2;MLEAF=0.250;MQ=29.84;MQ0=0;MQRankSum=-0.969;QD=0.74;ReadPosRankSum=-0.738;SB=1.12 GT:AD:DP:GQ:PL 0/1:26,3:29:42:42,0,423 0/0:32,1:33:49:0,49,868 0/0:53,0:53:99:0,102,1161 0/1:24,3:27:41:41,0,491 +chr2 229890660 rs34351298 A G 3156.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=4.667;DB;DP=145;Dels=0.00;FS=2.385;HaplotypeScore=0.7185;MLEAC=6;MLEAF=0.750;MQ=34.66;MQ0=0;MQRankSum=-3.286;QD=21.77;ReadPosRankSum=2.289;SB=-1.485e+03 GT:AD:DP:GQ:PL 0/1:17,17:34:99:502,0,529 0/1:22,11:33:99:219,0,705 1/1:3,37:40:79:1281,79,0 1/1:2,36:38:74:1201,74,0 +chr2 230723604 . C A 109.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.341;DP=184;Dels=0.01;FS=119.911;HaplotypeScore=9.4241;MLEAC=1;MLEAF=0.125;MQ=31.21;MQ0=0;MQRankSum=-5.305;QD=1.98;ReadPosRankSum=1.106;SB=-5.077e+00 GT:AD:DP:GQ:PL 0/0:37,4:41:19:0,19,1013 0/1:42,12:54:99:145,0,909 0/0:48,2:50:88:0,88,1302 0/0:36,2:38:68:0,68,1042 +chr2 230744828 . C G 758.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.074;DP=159;Dels=0.03;FS=5.475;HaplotypeScore=8.9919;MLEAC=4;MLEAF=0.500;MQ=29.44;MQ0=0;MQRankSum=-2.711;QD=4.77;ReadPosRankSum=7.152;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,10:46:99:177,0,377 0/1:30,7:39:99:177,0,365 0/1:28,13:43:99:325,0,416 0/1:15,6:27:99:122,0,147 +chr2 231042276 rs1135791 A G 5092.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.587;DB;DP=281;Dels=0.00;FS=1.461;HaplotypeScore=1.9705;MLEAC=5;MLEAF=0.625;MQ=39.02;MQ0=0;MQRankSum=-2.381;QD=18.12;ReadPosRankSum=1.961;SB=-1.945e+03 GT:AD:DP:GQ:PL 0/1:44,36:80:99:1213,0,1471 1/1:2,63:65:99:2536,169,0 0/1:61,31:92:99:923,0,2024 0/1:30,14:44:99:420,0,1019 +chr2 231256747 . A C 40.10 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.584;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.9082;MLEAC=1;MLEAF=0.125;MQ=24.07;MQ0=0;MQRankSum=1.056;QD=1.54;ReadPosRankSum=-0.318;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:12:0,12,149 0/0:21,0:21:18:0,18,195 0/0:25,1:26:21:0,21,255 0/1:23,3:26:76:76,0,169 +chr2 231333767 . C A 249.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.393;DP=124;Dels=0.00;FS=19.757;HaplotypeScore=5.3941;MLEAC=4;MLEAF=0.500;MQ=33.53;MQ0=0;MQRankSum=-2.701;QD=2.01;ReadPosRankSum=-1.955;SB=-1.203e-02 GT:AD:DP:GQ:PL 0/1:29,4:33:42:42,0,654 0/1:37,6:43:99:115,0,604 0/1:35,5:40:82:82,0,629 0/1:5,2:8:53:53,0,120 +chr2 231738263 rs2289234 C T 35.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.509;DB;DP=117;Dels=0.00;FS=5.262;HaplotypeScore=3.4987;MLEAC=1;MLEAF=0.125;MQ=32.59;MQ0=0;MQRankSum=0.116;QD=2.40;ReadPosRankSum=-0.973;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1201 0/1:12,3:15:72:72,0,364 0/0:32,0:32:81:0,81,1002 0/0:34,0:34:81:0,81,968 +chr2 232220469 . G C 132.69 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.147;DP=50;Dels=0.00;FS=4.976;HaplotypeScore=1.2620;MLEAC=3;MLEAF=0.375;MQ=39.00;MQ0=0;MQRankSum=-3.297;QD=3.32;ReadPosRankSum=-1.741;SB=-1.191e+00 GT:AD:DP:GQ:PL 0/1:13,1:14:2:2,0,316 0/1:12,3:15:56:56,0,247 0/0:10,0:10:27:0,27,354 0/1:7,4:11:99:115,0,183 +chr2 232262384 . A C 163.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.005;DP=58;Dels=0.02;FS=16.847;HaplotypeScore=6.4791;MLEAC=4;MLEAF=0.500;MQ=20.84;MQ0=0;MQRankSum=-0.108;QD=2.82;ReadPosRankSum=3.109;SB=-3.412e-03 GT:AD:DP:GQ:PL 0/1:7,3:10:56:56,0,63 0/1:8,6:14:56:57,0,56 0/1:9,5:16:39:39,0,63 0/1:9,8:17:44:54,0,44 +chr2 232325692 rs12996154 A C 69.60 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.478;DB;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.1835;MLEAC=1;MLEAF=0.125;MQ=37.91;MQ0=0;MQRankSum=0.096;QD=9.94;ReadPosRankSum=0.287;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:73:105,0,73 0/0:6,0:6:18:0,18,234 0/0:9,0:9:24:0,24,300 0/0:1,0:1:3:0,3,44 +chr2 232393223 . C G 35.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.635;DP=53;Dels=0.00;FS=28.163;HaplotypeScore=2.4636;MLEAC=2;MLEAF=0.250;MQ=27.61;MQ0=0;MQRankSum=-0.629;QD=1.19;ReadPosRankSum=-0.018;SB=6.64 GT:AD:DP:GQ:PL 0/1:11,3:14:46:46,0,163 0/1:14,2:16:31:31,0,191 0/0:10,1:11:21:0,21,276 0/0:12,0:12:21:0,21,219 +chr2 232673388 . T G 114 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.239;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.7648;MLEAC=5;MLEAF=0.833;MQ=20.91;MQ0=0;MQRankSum=-0.536;QD=4.75;ReadPosRankSum=1.239;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:13:14:41,0,14 1/1:3,1:5:3:29,3,0 1/1:2,4:6:9:83,9,0 ./. +chr2 233208534 rs6711186 T C 103.53 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.234;DB;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=33.41;MQ0=0;MQRankSum=-2.295;QD=6.47;ReadPosRankSum=0.609;SB=-4.071e+01 GT:AD:DP:GQ:PL 0/0:4,0:4:12:0,12,152 0/1:7,3:10:60:60,0,182 0/1:2,3:6:68:82,0,68 ./. +chr2 233282973 . T A 69.04 . AC=7;AF=0.875;AN=8;BaseQRankSum=-2.567;DP=29;Dels=0.00;FS=8.860;HaplotypeScore=2.8491;MLEAC=7;MLEAF=0.875;MQ=17.13;MQ0=0;MQRankSum=1.500;QD=2.38;ReadPosRankSum=-1.233;SB=3.95 GT:AD:DP:GQ:PL 1/1:7,2:9:3:23,3,0 0/1:6,2:9:23:23,0,57 1/1:6,1:7:3:34,3,0 1/1:3,1:4:3:29,3,0 +chr2 233347024 . G A 40.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.292;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=7.3674;MLEAC=3;MLEAF=0.375;MQ=17.90;MQ0=0;MQRankSum=-0.133;QD=1.12;ReadPosRankSum=2.628;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:20:20,0,77 0/1:11,1:12:13:13,0,47 0/1:12,5:17:48:48,0,56 0/0:7,1:8:3:0,3,22 +chr2 233398939 . C G 78.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.202;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.5708;MLEAC=1;MLEAF=0.125;MQ=31.39;MQ0=0;MQRankSum=-2.460;QD=3.76;ReadPosRankSum=1.970;SB=-1.162e-02 GT:AD:DP:GQ:PL 0/0:26,0:27:45:0,45,543 0/0:19,0:19:27:0,27,360 0/0:33,1:35:38:0,38,635 0/1:16,5:21:99:115,0,251 +chr2 233408292 . C A 199.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.878;DP=63;Dels=0.03;FS=7.497;HaplotypeScore=8.3168;MLEAC=4;MLEAF=0.500;MQ=27.47;MQ0=0;MQRankSum=-0.353;QD=3.17;ReadPosRankSum=-0.030;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:99:138,0,197 0/1:12,4:16:61:61,0,168 0/1:15,3:18:28:28,0,300 0/1:10,1:11:15:15,0,134 +chr2 233656217 . A T 61.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.169;DP=51;Dels=0.02;FS=2.470;HaplotypeScore=10.2045;MLEAC=3;MLEAF=0.375;MQ=27.82;MQ0=0;MQRankSum=-0.700;QD=1.46;ReadPosRankSum=2.052;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:30:30,0,84 0/1:13,2:15:33:33,0,121 0/0:9,0:9:9:0,9,87 0/1:10,2:12:41:41,0,77 +chr2 233756193 . C T 105.70 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.135;DP=74;Dels=0.04;FS=5.485;HaplotypeScore=17.9189;MLEAC=5;MLEAF=0.625;MQ=24.83;MQ0=0;MQRankSum=-1.156;QD=1.43;ReadPosRankSum=1.861;SB=-3.929e+01 GT:AD:DP:GQ:PL 0/1:11,1:12:13:13,0,152 1/1:7,5:13:9:81,9,0 0/1:19,2:23:20:20,0,216 0/1:19,2:23:36:36,0,108 +chr2 233998735 . A C 33.30 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.408;DP=34;Dels=0.00;FS=5.849;HaplotypeScore=2.2905;MLEAC=2;MLEAF=0.250;MQ=27.27;MQ0=0;MQRankSum=-0.852;QD=2.22;ReadPosRankSum=-0.630;SB=0.922 GT:AD:DP:GQ:PL 0/0:8,0:8:9:0,9,122 0/1:4,1:5:27:27,0,76 0/1:8,2:10:47:47,0,105 0/0:10,1:11:9:0,9,129 +chr2 234092995 . T C 48.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.035;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.8611;MLEAC=1;MLEAF=0.125;MQ=35.71;MQ0=0;MQRankSum=-3.035;QD=1.26;ReadPosRankSum=-1.887;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1530 0/0:39,1:40:90:0,90,1127 0/0:58,1:59:99:0,120,1733 0/1:33,6:39:85:85,0,1035 +chr2 234093067 . T C 434.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.646;DP=316;Dels=0.00;FS=211.666;HaplotypeScore=9.0663;MLEAC=4;MLEAF=0.500;MQ=32.02;MQ0=0;MQRankSum=0.313;QD=1.38;ReadPosRankSum=1.523;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:65,9:74:95:95,0,1818 0/1:71,11:82:99:185,0,1640 0/1:81,10:91:67:67,0,1811 0/1:60,9:69:99:130,0,1214 +chr2 234107070 rs7569827 G A 597.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.317;DB;DP=69;Dels=0.01;FS=3.912;HaplotypeScore=12.0010;MLEAC=4;MLEAF=0.500;MQ=23.39;MQ0=0;MQRankSum=0.075;QD=8.66;ReadPosRankSum=3.916;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,9:12:43:170,0,43 0/1:5,15:20:2:236,0,2 0/1:9,10:19:99:164,0,107 0/1:13,4:17:69:69,0,154 +chr2 234172766 . T C 406.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.287;DP=187;Dels=0.00;FS=2.250;HaplotypeScore=4.2780;MLEAC=4;MLEAF=0.500;MQ=32.33;MQ0=0;MQRankSum=-0.382;QD=2.17;ReadPosRankSum=1.303;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,11:46:99:267,0,423 0/1:52,4:56:21:21,0,645 0/1:44,6:50:74:74,0,850 0/1:30,5:35:87:87,0,356 +chr2 234181593 rs2289475 G C 1758.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.660;DB;DP=143;Dels=0.01;FS=1.951;HaplotypeScore=1.1830;MLEAC=4;MLEAF=0.500;MQ=38.31;MQ0=0;MQRankSum=-2.241;QD=17.41;ReadPosRankSum=0.398;SB=-7.719e+01 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,120,1596 1/1:3,24:27:11:864,11,0 0/1:24,18:42:99:582,0,737 0/1:20,11:31:99:360,0,623 +chr2 234182447 . T A 210.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.385;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8777;MLEAC=4;MLEAF=0.500;MQ=30.19;MQ0=0;MQRankSum=-2.743;QD=1.88;ReadPosRankSum=2.841;SB=-4.645e-03 GT:AD:DP:GQ:PL 0/1:23,6:30:74:74,0,299 0/1:32,4:36:42:42,0,429 0/1:28,7:36:99:120,0,401 0/1:9,1:10:17:17,0,57 +chr2 234184417 rs3792109 G A 2280.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.782;DB;DP=225;Dels=0.00;FS=10.424;HaplotypeScore=10.4028;MLEAC=4;MLEAF=0.500;MQ=33.27;MQ0=0;MQRankSum=-1.026;QD=14.43;ReadPosRankSum=-0.604;SB=-3.070e+02 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,168,2121 1/1:4,46:52:99:1547,123,0 0/1:37,15:52:99:360,0,1013 0/1:36,17:53:99:422,0,888 +chr2 234197294 . G C 108.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.907;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=2.1585;MLEAC=3;MLEAF=0.375;MQ=34.47;MQ0=0;MQRankSum=-2.492;QD=2.30;ReadPosRankSum=0.609;SB=-7.687e-01 GT:AD:DP:GQ:PL 0/1:19,2:21:22:22,0,301 0/0:13,1:14:6:0,6,367 0/1:10,1:11:7:7,0,234 0/1:9,5:14:99:120,0,129 +chr2 234243755 . C A 67.31 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.515;DP=71;Dels=0.00;FS=7.841;HaplotypeScore=12.0721;MLEAC=4;MLEAF=0.500;MQ=19.91;MQ0=0;MQRankSum=0.412;QD=0.95;ReadPosRankSum=2.129;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:47:47,0,69 0/1:18,1:20:9:9,0,98 0/1:14,2:16:11:11,0,90 0/1:14,3:17:42:42,0,94 +chr2 234247508 rs13427703 C G 1037.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.438;DB;DP=124;Dels=0.01;FS=1.199;HaplotypeScore=2.3175;MLEAC=3;MLEAF=0.375;MQ=37.94;MQ0=0;MQRankSum=-1.782;QD=11.93;ReadPosRankSum=0.934;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/0:36,1:37:99:0,99,1318 0/1:14,13:27:99:428,0,353 0/1:20,10:30:99:295,0,659 0/1:18,11:29:99:358,0,260 +chr2 234343637 . A T 31.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.924;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9847;MLEAC=1;MLEAF=0.125;MQ=36.85;MQ0=0;MQRankSum=-1.674;QD=1.29;ReadPosRankSum=2.523;SB=0.029 GT:AD:DP:GQ:PL 0/0:22,1:23:23:0,23,556 0/0:33,2:35:20:0,20,821 0/0:22,1:23:25:0,25,526 0/1:20,4:24:67:67,0,265 +chr2 234436080 . T A 44.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.643;DP=216;Dels=0.01;FS=140.869;HaplotypeScore=22.9348;MLEAC=2;MLEAF=0.250;MQ=29.91;MQ0=0;MQRankSum=-5.996;QD=0.38;ReadPosRankSum=-0.566;SB=-3.219e+00 GT:AD:DP:GQ:PL 0/1:50,5:56:8:8,0,943 0/1:48,10:58:75:75,0,901 0/0:62,7:69:5:0,5,1186 0/0:27,3:31:39:0,39,420 +chr2 234469664 rs6753062 T C 888.91 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.939;DB;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8872;MLEAC=5;MLEAF=0.625;MQ=31.22;MQ0=0;MQRankSum=-1.161;QD=10.84;ReadPosRankSum=1.714;SB=-4.252e+02 GT:AD:DP:GQ:PL 1/1:5,14:19:14:465,14,0 0/1:17,11:28:99:270,0,490 0/1:18,8:26:99:169,0,359 0/1:7,2:9:30:30,0,196 +chr2 234630220 . C G 35.22 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.231;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=30.73;MQ0=0;MQRankSum=0.358;QD=17.61;ReadPosRankSum=1.231;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,43 0/0:2,0:2:3:0,3,39 1/1:0,2:2:6:72,6,0 ./. +chr2 234707460 rs11563247 G C 79.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.192;DB;DP=20;Dels=0.00;FS=2.963;HaplotypeScore=3.6473;MLEAC=2;MLEAF=0.250;MQ=28.62;MQ0=0;MQRankSum=0.919;QD=6.12;ReadPosRankSum=-0.495;SB=2.41 GT:AD:DP:GQ:PL 0/0:6,0:6:6:0,6,65 0/1:4,2:6:64:64,0,101 0/0:1,0:1:3:0,3,25 0/1:5,2:7:55:55,0,69 +chr2 234713638 . G C 45.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.858;DP=102;Dels=0.00;FS=47.838;HaplotypeScore=5.4298;MLEAC=2;MLEAF=0.250;MQ=34.69;MQ0=0;MQRankSum=-4.482;QD=0.88;ReadPosRankSum=-1.627;SB=-4.190e-01 GT:AD:DP:GQ:PL 0/1:23,3:26:31:31,0,581 0/0:26,3:29:34:0,34,714 0/1:22,4:26:56:56,0,606 0/0:20,1:21:28:0,28,651 +chr2 234905031 . C A 77.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.645;DP=176;Dels=0.00;FS=47.257;HaplotypeScore=7.5806;MLEAC=3;MLEAF=0.375;MQ=32.93;MQ0=0;MQRankSum=-2.529;QD=0.61;ReadPosRankSum=0.956;SB=-1.470e+00 GT:AD:DP:GQ:PL 0/1:40,2:43:4:4,0,555 0/1:33,6:39:82:82,0,443 0/1:40,5:45:32:32,0,627 0/0:45,2:49:13:0,13,760 +chr2 235943673 . C A 49.66 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.852;DP=84;Dels=0.01;FS=58.210;HaplotypeScore=9.6467;MLEAC=4;MLEAF=0.500;MQ=30.18;MQ0=0;MQRankSum=-2.722;QD=0.83;ReadPosRankSum=0.825;SB=-3.071e+00 GT:AD:DP:GQ:PL 0/0:23,1:24:1:0,1,391 0/1:12,1:14:7:7,0,227 0/1:18,2:21:21:21,0,378 0/1:18,5:24:61:61,0,334 +chr2 236715998 . C T 51.54 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.590;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=12.5395;MLEAC=3;MLEAF=0.375;MQ=22.51;MQ0=0;MQRankSum=0.019;QD=0.94;ReadPosRankSum=0.552;SB=-2.412e+00 GT:AD:DP:GQ:PL 0/1:14,2:16:48:48,0,66 0/0:13,0:13:9:0,9,93 0/1:18,3:21:17:18,0,17 0/1:15,3:18:28:28,0,31 +chr2 236817547 . T G 61.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.032;DP=205;Dels=0.00;FS=3.435;HaplotypeScore=0.9968;MLEAC=1;MLEAF=0.125;MQ=24.03;MQ0=0;MQRankSum=1.855;QD=1.35;ReadPosRankSum=0.372;SB=-1.176e-02 GT:AD:DP:GQ:PL 0/0:51,2:53:49:0,49,818 0/0:55,1:56:39:0,39,700 0/0:50,0:50:57:0,57,636 0/1:41,5:46:98:98,0,375 +chr2 236911466 rs10929156 C T 44.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DB;DP=9;Dels=0.00;FS=3.680;HaplotypeScore=1.2434;MLEAC=2;MLEAF=1.00;MQ=16.75;MQ0=0;MQRankSum=1.026;QD=11.19;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:2,2:4:6:76,6,0 +chr2 237246882 . A C 1193.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.698;DP=283;Dels=0.00;FS=121.503;HaplotypeScore=1.9687;MLEAC=4;MLEAF=0.500;MQ=37.41;MQ0=0;MQRankSum=-3.209;QD=4.22;ReadPosRankSum=3.939;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:63,16:79:99:404,0,1579 0/1:60,13:73:99:296,0,1521 0/1:56,13:69:99:326,0,1349 0/1:52,10:62:99:210,0,1368 +chr2 238257353 rs2646263 A G 138.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.908;DB;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.8067;MLEAC=1;MLEAF=0.125;MQ=37.98;MQ0=0;MQRankSum=0.129;QD=11.58;ReadPosRankSum=-0.776;SB=-1.120e-02 GT:AD:DP:GQ:PL 0/0:17,0:17:42:0,42,563 0/1:7,5:12:99:175,0,189 0/0:13,0:13:33:0,33,466 0/0:11,0:11:30:0,30,365 +chr2 238280861 . C A 213.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.032;DP=75;Dels=0.01;FS=61.354;HaplotypeScore=12.3199;MLEAC=4;MLEAF=0.500;MQ=25.30;MQ0=0;MQRankSum=0.009;QD=2.85;ReadPosRankSum=2.188;SB=-3.092e+00 GT:AD:DP:GQ:PL 0/1:10,5:15:87:142,0,87 0/1:15,5:20:74:74,0,123 0/1:14,1:15:13:13,0,232 0/1:19,5:24:27:27,0,274 +chr2 238283104 . G A 47.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.400;DP=90;Dels=0.01;FS=2.311;HaplotypeScore=5.6111;MLEAC=3;MLEAF=0.375;MQ=22.06;MQ0=0;MQRankSum=1.090;QD=0.66;ReadPosRankSum=-0.801;SB=0.871 GT:AD:DP:GQ:PL 0/1:16,3:19:49:49,0,265 0/1:22,1:23:14:14,0,98 0/1:26,3:29:26:26,0,293 0/0:17,0:18:6:0,6,52 +chr2 238475826 rs112601669 C A 415.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.537;DB;DP=41;Dels=0.00;FS=3.217;HaplotypeScore=2.0071;MLEAC=4;MLEAF=0.500;MQ=29.36;MQ0=0;MQRankSum=0.293;QD=10.14;ReadPosRankSum=1.294;SB=-1.155e+02 GT:AD:DP:GQ:PL 0/1:6,2:8:52:52,0,121 0/1:5,2:8:41:41,0,60 0/1:9,7:16:99:236,0,137 0/1:4,5:9:35:129,0,35 +chr2 238484222 rs10202062 G A 77.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.948;DB;DP=23;Dels=0.00;FS=2.823;HaplotypeScore=2.0003;MLEAC=2;MLEAF=0.250;MQ=28.49;MQ0=0;MQRankSum=1.303;QD=12.99;ReadPosRankSum=0.829;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,3:6:9:119,9,0 0/0:9,0:10:6:0,6,79 0/0:4,0:4:6:0,6,70 0/0:3,0:3:3:0,3,41 +chr2 238925338 . C A 33.72 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.347;DP=98;Dels=0.00;FS=4.885;HaplotypeScore=15.7214;MLEAC=2;MLEAF=0.250;MQ=22.23;MQ0=0;MQRankSum=-0.902;QD=0.65;ReadPosRankSum=2.063;SB=-3.195e+01 GT:AD:DP:GQ:PL 0/1:13,4:18:54:54,0,111 0/0:21,1:23:21:0,21,199 0/1:31,3:34:21:21,0,161 0/0:20,1:23:21:0,21,190 +chr2 238933910 . G A 52.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.782;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.9379;MLEAC=3;MLEAF=0.375;MQ=33.67;MQ0=0;MQRankSum=1.832;QD=0.80;ReadPosRankSum=0.386;SB=-1.228e-02 GT:AD:DP:GQ:PL 0/1:21,3:24:40:40,0,472 0/1:15,1:16:5:5,0,351 0/0:31,2:33:18:0,18,675 0/1:23,3:26:49:49,0,539 +chr2 238991836 . G T 70.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.668;DP=114;Dels=0.00;FS=2.359;HaplotypeScore=0.7021;MLEAC=1;MLEAF=0.125;MQ=32.88;MQ0=0;MQRankSum=-0.977;QD=3.38;ReadPosRankSum=2.274;SB=-1.133e-02 GT:AD:DP:GQ:PL 0/0:30,1:31:46:0,46,738 0/0:28,0:28:51:0,51,605 0/0:34,0:34:78:0,78,971 0/1:17,4:21:99:107,0,285 +chr2 239167288 . G A 64.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.191;DP=92;Dels=0.03;FS=37.780;HaplotypeScore=2.1364;MLEAC=2;MLEAF=0.250;MQ=30.76;MQ0=0;MQRankSum=-0.914;QD=1.27;ReadPosRankSum=-1.837;SB=3.83 GT:AD:DP:GQ:PL 0/1:21,3:24:45:45,0,470 0/1:22,4:26:61:61,0,336 0/0:25,0:25:51:0,51,533 0/0:13,1:14:21:0,21,240 +chr2 239463148 rs6726956 G A 37.05 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.727;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=15.18;MQ0=0;MQRankSum=0.727;QD=9.26;ReadPosRankSum=0.727;SB=-2.575e+01 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:22,3,0 1/1:1,2:3:6:54,6,0 0/0:1,0:2:3:0,3,27 +chr2 239495554 rs10188868 G A 42.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.51;MQ0=0;MQRankSum=0.736;QD=10.69;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,2:4:6:74,6,0 ./. ./. +chr2 240098220 . G A 422.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.553;DP=80;Dels=0.03;FS=13.627;HaplotypeScore=15.5598;MLEAC=4;MLEAF=0.500;MQ=24.25;MQ0=0;MQRankSum=1.273;QD=5.28;ReadPosRankSum=-3.672;SB=-8.280e-03 GT:AD:DP:GQ:PL 0/1:7,6:13:99:139,0,99 0/1:15,7:22:58:133,0,58 0/1:22,4:26:86:86,0,221 0/1:10,7:17:99:107,0,108 +chr2 240950954 . A C 68.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.440;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5321;MLEAC=3;MLEAF=0.375;MQ=27.36;MQ0=0;MQRankSum=2.339;QD=2.21;ReadPosRankSum=0.360;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:58:58,0,150 0/1:6,1:7:13:13,0,80 0/1:11,2:13:40:40,0,46 0/0:8,0:8:12:0,12,128 +chr2 240982157 . C G 58.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.943;DP=117;Dels=0.01;FS=6.691;HaplotypeScore=3.6657;MLEAC=3;MLEAF=0.375;MQ=13.67;MQ0=0;MQRankSum=3.140;QD=0.63;ReadPosRankSum=-2.589;SB=3.31 GT:AD:DP:GQ:PL 0/0:22,1:23:6:0,6,50 0/1:36,7:43:32:32,0,107 0/1:24,2:26:32:32,0,104 0/1:21,3:24:37:37,0,73 +chr2 241566012 rs2953153 G A 279.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.363;DB;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=37.80;MQ0=0;MQRankSum=-2.802;QD=14.00;ReadPosRankSum=1.352;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,4:7:95:134,0,95 0/0:2,0:2:6:0,6,77 0/1:2,2:4:60:60,0,74 0/1:5,4:9:99:128,0,184 +chr2 241700642 . C A 39.38 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.655;DP=97;Dels=0.01;FS=4.934;HaplotypeScore=19.0224;MLEAC=4;MLEAF=0.500;MQ=22.75;MQ0=0;MQRankSum=1.226;QD=0.55;ReadPosRankSum=-1.798;SB=-1.213e+00 GT:AD:DP:GQ:PL 0/1:20,2:22:37:37,0,203 0/0:24,1:25:0:0,0,162 0/1:22,1:23:15:15,0,115 0/1:24,2:26:27:27,0,211 +chr2 241705159 . T A 54.34 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.913;DP=78;Dels=0.00;FS=51.164;HaplotypeScore=0.9970;MLEAC=4;MLEAF=0.500;MQ=31.24;MQ0=0;MQRankSum=0.421;QD=0.70;ReadPosRankSum=-0.018;SB=-1.710e+00 GT:AD:DP:GQ:PL 0/1:17,3:21:45:45,0,443 0/1:18,3:21:38:38,0,526 0/1:22,2:24:6:6,0,538 0/1:11,1:12:6:6,0,197 +chr2 241797544 rs12998323 C T 54.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=11;Dels=0.00;FS=3.522;HaplotypeScore=0.2892;MLEAC=4;MLEAF=1.00;MQ=19.32;MQ0=0;MQRankSum=1.026;QD=13.50;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:2,1:3:3:43,3,0 1/1:0,1:1:3:44,3,0 +chr2 241813496 rs11693280 C T 2966.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.974;DB;DP=129;Dels=0.01;FS=53.850;HaplotypeScore=2.2091;MLEAC=7;MLEAF=0.875;MQ=28.73;MQ0=0;MQRankSum=0.580;QD=23.00;ReadPosRankSum=-1.147;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,13:27:99:358,0,384 1/1:8,26:34:78:865,78,0 1/1:6,28:34:78:874,78,0 1/1:3,30:33:81:914,81,0 +chr2 241814511 . C A 278.16 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.634;DP=54;Dels=0.04;FS=17.576;HaplotypeScore=7.9837;MLEAC=5;MLEAF=0.625;MQ=18.81;MQ0=0;MQRankSum=1.013;QD=5.15;ReadPosRankSum=1.418;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:18:48,0,18 1/1:14,5:19:12:115,12,0 0/1:6,6:12:23:87,0,23 0/1:5,6:11:28:73,0,28 +chr2 241885514 . C A 32.48 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.627;DP=26;Dels=0.00;FS=19.863;HaplotypeScore=1.3739;MLEAC=1;MLEAF=0.125;MQ=28.26;MQ0=0;MQRankSum=0.280;QD=3.61;ReadPosRankSum=-0.950;SB=-4.787e-01 GT:AD:DP:GQ:PL 0/0:4,0:4:9:0,9,111 0/0:5,0:5:9:0,9,102 0/0:8,0:8:9:0,9,111 0/1:6,3:9:68:68,0,80 +chr2 242007255 . G C 178.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.426;DP=120;Dels=0.00;FS=70.811;HaplotypeScore=6.6421;MLEAC=3;MLEAF=0.375;MQ=32.78;MQ0=0;MQRankSum=-1.360;QD=1.96;ReadPosRankSum=-1.935;SB=0.035 GT:AD:DP:GQ:PL 0/0:28,1:29:8:0,8,441 0/1:23,4:27:75:75,0,430 0/1:26,6:32:99:119,0,551 0/1:29,3:32:27:27,0,556 +chr2 242035332 . G T 544.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.576;DP=254;Dels=0.00;FS=13.768;HaplotypeScore=4.6022;MLEAC=4;MLEAF=0.500;MQ=27.52;MQ0=0;MQRankSum=1.606;QD=2.14;ReadPosRankSum=3.243;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:55,11:66:99:225,0,471 0/1:71,9:80:99:162,0,459 0/1:55,5:60:78:78,0,347 0/1:39,7:47:99:122,0,242 +chr2 242047566 . T A 248.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=-6.749;DP=331;Dels=0.00;FS=148.524;HaplotypeScore=4.6783;MLEAC=2;MLEAF=0.250;MQ=34.30;MQ0=0;MQRankSum=-3.094;QD=1.52;ReadPosRankSum=1.633;SB=-1.108e+00 GT:AD:DP:GQ:PL 0/1:72,7:79:63:63,0,1586 0/1:71,13:85:99:227,0,1243 0/0:85,5:91:9:0,9,1565 0/0:75,1:76:94:0,94,1504 +chr2 242078030 . C A 44.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.639;DP=104;Dels=0.00;FS=76.152;HaplotypeScore=3.5394;MLEAC=2;MLEAF=0.250;MQ=36.55;MQ0=0;MQRankSum=-1.762;QD=0.84;ReadPosRankSum=0.052;SB=-7.835e-01 GT:AD:DP:GQ:PL 0/0:20,1:21:26:0,26,630 0/1:27,3:30:35:35,0,544 0/0:29,1:30:36:0,36,821 0/1:20,3:23:51:51,0,524 +chr2 242139491 rs2013250 C T 989.75 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.269;DB;DP=47;Dels=0.00;FS=1.807;HaplotypeScore=1.8200;MLEAC=7;MLEAF=0.875;MQ=28.71;MQ0=0;MQRankSum=0.284;QD=21.06;ReadPosRankSum=0.776;SB=-3.175e+02 GT:AD:DP:GQ:PL 0/1:4,5:10:86:144,0,86 1/1:4,4:8:12:137,12,0 1/1:2,16:18:21:483,21,0 1/1:2,9:11:24:270,24,0 +chr2 242157240 . C T 37.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.425;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.0385;MLEAC=3;MLEAF=0.375;MQ=27.09;MQ0=0;MQRankSum=0.614;QD=2.50;ReadPosRankSum=-0.614;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:24:24,0,59 0/0:6,0:6:9:0,9,104 0/1:4,1:5:27:27,0,80 0/1:4,1:5:29:29,0,70 +chr2 242179134 rs10153800 G A 486.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.397;DB;DP=138;Dels=0.01;FS=6.129;HaplotypeScore=4.1423;MLEAC=1;MLEAF=0.125;MQ=35.93;MQ0=0;MQRankSum=-3.234;QD=12.17;ReadPosRankSum=-0.096;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,102,1347 0/1:22,18:40:99:523,0,621 0/0:31,1:32:66:0,66,1095 0/0:30,0:30:90:0,90,1100 +chr2 242192414 . G C 281.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.427;DP=157;Dels=0.01;FS=13.668;HaplotypeScore=9.6077;MLEAC=4;MLEAF=0.500;MQ=35.10;MQ0=0;MQRankSum=-2.744;QD=1.79;ReadPosRankSum=0.390;SB=-1.236e-02 GT:AD:DP:GQ:PL 0/1:36,4:40:38:38,0,981 0/1:33,7:40:99:104,0,828 0/1:32,5:37:80:80,0,882 0/1:33,6:39:99:102,0,808 +chr2 242396268 . C T 319.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.022;DP=67;Dels=0.03;FS=26.480;HaplotypeScore=16.6560;MLEAC=4;MLEAF=0.500;MQ=24.25;MQ0=0;MQRankSum=1.072;QD=4.77;ReadPosRankSum=0.875;SB=-5.648e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:16:16,0,133 0/1:9,4:13:45:45,0,113 0/1:11,9:20:99:190,0,132 0/1:14,5:19:72:111,0,72 +chr2 242429424 . C G 134.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.004;DP=148;Dels=0.01;FS=36.557;HaplotypeScore=3.4351;MLEAC=4;MLEAF=0.500;MQ=39.25;MQ0=0;MQRankSum=-4.598;QD=0.91;ReadPosRankSum=-4.283;SB=-3.795e-02 GT:AD:DP:GQ:PL 0/1:24,3:27:23:23,0,709 0/1:41,4:46:32:32,0,1087 0/1:41,5:46:28:28,0,1212 0/1:24,4:28:94:94,0,543 +chr2 242590318 . A C 85.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.232;DP=55;Dels=0.00;FS=2.460;HaplotypeScore=2.7064;MLEAC=4;MLEAF=0.500;MQ=32.50;MQ0=0;MQRankSum=-2.063;QD=1.56;ReadPosRankSum=3.221;SB=-1.328e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:33:33,0,243 0/1:15,3:18:37:37,0,362 0/1:11,1:12:18:18,0,197 0/1:5,2:7:40:40,0,120 +chr2 242598418 rs62190280 G A 571.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.320;DB;DP=58;Dels=0.02;FS=2.800;HaplotypeScore=0.7558;MLEAC=3;MLEAF=0.375;MQ=35.13;MQ0=0;MQRankSum=-0.636;QD=13.00;ReadPosRankSum=0.940;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,7:15:99:197,0,194 0/0:13,0:13:36:0,36,486 0/1:6,7:13:99:249,0,135 0/1:10,6:16:99:169,0,271 +chr2 242648545 rs7595652 C T 2634.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.445;DB;DP=137;Dels=0.01;FS=4.216;HaplotypeScore=4.0817;MLEAC=5;MLEAF=0.625;MQ=34.89;MQ0=0;MQRankSum=-2.456;QD=19.23;ReadPosRankSum=-0.199;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,17:38:99:509,0,634 1/1:1,32:33:65:1117,65,0 0/1:17,16:33:99:528,0,455 0/1:14,17:31:99:526,0,414 +chr3 391100 rs13060847 A G 2914.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.391;DB;DP=106;Dels=0.00;FS=20.401;HaplotypeScore=1.5517;MLEAC=8;MLEAF=1.00;MQ=29.71;MQ0=0;MQRankSum=1.216;QD=27.50;ReadPosRankSum=3.553;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:2,29:31:84:972,84,0 1/1:6,28:34:50:865,50,0 1/1:4,26:30:54:834,54,0 1/1:1,10:11:27:283,27,0 +chr3 425465 . A C 110.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.828;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.2791;MLEAC=4;MLEAF=0.500;MQ=32.76;MQ0=0;MQRankSum=-2.275;QD=0.95;ReadPosRankSum=2.352;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,6:37:74:74,0,724 0/1:33,4:37:9:9,0,741 0/1:28,3:31:34:34,0,505 0/1:9,2:11:35:35,0,101 +chr3 431233 . T C 142.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.868;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9826;MLEAC=3;MLEAF=0.375;MQ=29.88;MQ0=0;MQRankSum=-2.070;QD=4.60;ReadPosRankSum=2.471;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:18:20,0,18 0/1:6,6:12:59:127,0,59 0/1:10,2:12:38:38,0,93 0/0:4,0:4:9:0,9,108 +chr3 1415703 . A C 49.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.671;DP=86;Dels=0.03;FS=3.729;HaplotypeScore=22.9943;MLEAC=4;MLEAF=0.500;MQ=26.29;MQ0=0;MQRankSum=0.071;QD=0.57;ReadPosRankSum=-2.186;SB=-4.988e-01 GT:AD:DP:GQ:PL 0/1:16,3:19:38:38,0,153 0/1:26,2:28:12:12,0,309 0/1:25,1:26:11:11,0,276 0/1:9,1:10:30:30,0,77 +chr3 1427162 . G T 79.24 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.184;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.9977;MLEAC=2;MLEAF=0.500;MQ=31.55;MQ0=0;MQRankSum=-2.511;QD=4.40;ReadPosRankSum=0.919;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:46:46,0,136 0/1:7,3:10:68:68,0,134 ./. ./. +chr3 2777622 rs1554198 A G 1640.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.160;DB;DP=210;Dels=0.00;FS=0.628;HaplotypeScore=7.5608;MLEAC=4;MLEAF=0.500;MQ=31.41;MQ0=0;MQRankSum=-1.343;QD=7.81;ReadPosRankSum=2.649;SB=-5.400e+02 GT:AD:DP:GQ:PL 0/1:37,13:51:99:323,0,1085 0/1:43,22:66:99:609,0,945 0/1:44,24:68:99:628,0,1075 0/1:19,6:25:99:123,0,431 +chr3 3118142 rs17878995 G T 381.14 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.854;DB;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.2500;MLEAC=1;MLEAF=0.125;MQ=41.46;MQ0=0;MQRankSum=-2.876;QD=23.82;ReadPosRankSum=0.300;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:54:0,54,763 0/1:4,12:16:99:417,0,119 0/0:14,0:15:39:0,39,561 0/0:3,0:3:9:0,9,122 +chr3 4818792 rs4684443 T C 910.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.768;DB;DP=56;Dels=0.00;FS=3.332;HaplotypeScore=0.2479;MLEAC=4;MLEAF=0.500;MQ=33.99;MQ0=0;MQRankSum=-0.485;QD=16.26;ReadPosRankSum=-0.846;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:99:106,0,235 0/1:8,9:17:99:297,0,227 0/1:8,7:15:99:221,0,244 0/1:2,10:12:43:329,0,43 +chr3 4927308 rs6794077 A G 1410.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.694;DB;DP=44;Dels=0.00;FS=11.563;HaplotypeScore=0.2479;MLEAC=8;MLEAF=1.00;MQ=32.95;MQ0=0;MQRankSum=2.837;QD=32.07;ReadPosRankSum=0.405;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,9:10:27:325,27,0 1/1:1,11:12:33:406,33,0 1/1:0,11:11:33:416,33,0 1/1:1,9:11:24:303,24,0 +chr3 5021741 . C G 50.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.041;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.4459;MLEAC=3;MLEAF=0.375;MQ=33.69;MQ0=0;MQRankSum=-2.280;QD=1.05;ReadPosRankSum=2.638;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:71:71,0,212 0/1:14,1:15:3:3,0,204 0/0:16,1:17:19:0,19,443 0/1:12,2:14:17:17,0,312 +chr3 5214338 . G T 249.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.296;DP=152;Dels=0.00;FS=6.675;HaplotypeScore=0.9145;MLEAC=4;MLEAF=0.500;MQ=30.84;MQ0=0;MQRankSum=0.213;QD=1.64;ReadPosRankSum=-2.890;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:40,3:43:18:18,0,751 0/1:44,6:50:73:73,0,1162 0/1:41,8:49:99:147,0,820 0/1:8,2:10:54:54,0,142 +chr3 7621015 . T G 110.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.999;DP=47;Dels=0.00;FS=10.951;HaplotypeScore=5.4600;MLEAC=3;MLEAF=0.375;MQ=32.40;MQ0=0;MQRankSum=-2.605;QD=3.26;ReadPosRankSum=-0.030;SB=1.36 GT:AD:DP:GQ:PL 0/1:13,4:17:28:28,0,293 0/0:12,1:13:3:0,3,278 0/1:5,4:9:76:76,0,110 0/1:6,2:8:48:48,0,109 +chr3 8671460 . C G 82.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.564;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.5160;MLEAC=2;MLEAF=0.250;MQ=24.92;MQ0=0;MQRankSum=1.638;QD=3.94;ReadPosRankSum=1.692;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:15:0,15,137 0/0:11,0:12:21:0,21,179 0/1:9,2:11:43:43,0,51 0/1:7,3:10:20:81,0,20 +chr3 8955400 . A G 96.42 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.571;DP=71;Dels=0.00;FS=5.204;HaplotypeScore=5.6449;MLEAC=3;MLEAF=0.375;MQ=26.00;MQ0=0;MQRankSum=-0.073;QD=1.61;ReadPosRankSum=0.256;SB=-1.240e-02 GT:AD:DP:GQ:PL 0/1:21,2:23:32:32,0,62 0/1:15,2:17:39:39,0,142 0/1:16,4:20:20:68,0,20 0/0:10,1:11:9:0,9,77 +chr3 9390345 rs2728938 T C 1413.55 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.988;DB;DP=156;Dels=0.01;FS=51.844;HaplotypeScore=3.4023;MLEAC=7;MLEAF=0.875;MQ=18.82;MQ0=0;MQRankSum=6.234;QD=9.06;ReadPosRankSum=-2.812;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:14,20:34:39:468,39,0 0/1:24,19:43:34:306,0,34 1/1:15,25:40:30:285,30,0 1/1:15,22:38:39:399,39,0 +chr3 9514856 rs3915844 G A 166.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.430;DB;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.1835;MLEAC=1;MLEAF=0.125;MQ=40.27;MQ0=0;MQRankSum=-1.873;QD=5.76;ReadPosRankSum=0.763;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,120,1556 0/1:21,8:29:99:203,0,749 0/0:46,0:46:99:0,135,1787 0/0:20,0:20:60:0,60,841 +chr3 9725000 rs41277465 T A 521.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.077;DB;DP=89;Dels=0.01;FS=2.452;HaplotypeScore=1.5109;MLEAC=3;MLEAF=0.375;MQ=33.95;MQ0=0;MQRankSum=0.769;QD=8.15;ReadPosRankSum=0.077;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,941 0/1:11,9:20:99:304,0,232 0/1:16,5:21:99:110,0,442 0/1:17,5:22:99:151,0,308 +chr3 9769084 . G A 35.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.336;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.4350;MLEAC=3;MLEAF=0.375;MQ=27.92;MQ0=0;MQRankSum=-1.289;QD=0.44;ReadPosRankSum=1.158;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,2:30:9:9,0,417 0/1:24,4:28:39:39,0,220 0/1:21,2:23:28:28,0,133 0/0:16,1:17:3:0,3,229 +chr3 9776012 . A C 552.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.757;DP=228;Dels=0.00;FS=184.660;HaplotypeScore=3.6568;MLEAC=4;MLEAF=0.500;MQ=34.55;MQ0=0;MQRankSum=-1.757;QD=2.42;ReadPosRankSum=0.002;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:48,7:55:70:70,0,1169 0/1:55,7:62:84:84,0,1467 0/1:46,12:58:99:242,0,1193 0/1:43,10:53:99:199,0,1233 +chr3 9803140 . C T 32.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.245;DP=132;Dels=0.01;FS=17.535;HaplotypeScore=1.4383;MLEAC=3;MLEAF=0.375;MQ=37.40;MQ0=0;MQRankSum=-1.676;QD=0.35;ReadPosRankSum=-0.503;SB=-6.527e+00 GT:AD:DP:GQ:PL 0/0:36,3:39:0:0,0,928 0/1:26,2:28:2:2,0,649 0/1:32,3:35:6:6,0,840 0/1:25,4:29:60:60,0,692 +chr3 9882416 . C A 73.24 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.309;DP=74;Dels=0.00;FS=27.372;HaplotypeScore=0.4912;MLEAC=2;MLEAF=0.250;MQ=35.30;MQ0=0;MQRankSum=-0.363;QD=1.74;ReadPosRankSum=1.051;SB=-1.823e+00 GT:AD:DP:GQ:PL 0/0:12,0:12:24:0,24,258 0/0:19,1:20:6:0,6,389 0/1:20,3:23:49:49,0,517 0/1:15,4:19:65:65,0,301 +chr3 9890464 . A G 42.45 . AC=3;AF=0.750;AN=4;BaseQRankSum=-0.245;DP=41;Dels=0.00;FS=19.227;HaplotypeScore=0.6587;MLEAC=4;MLEAF=1.00;MQ=9.87;MQ0=0;MQRankSum=3.046;QD=2.12;ReadPosRankSum=1.295;SB=27.75 GT:AD:DP:GQ:PL 0/1:7,2:9:19:30,0,19 ./. ./. 1/1:8,3:11:6:48,6,0 +chr3 9908792 . G T 72.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.777;DP=70;Dels=0.00;FS=2.519;HaplotypeScore=11.2511;MLEAC=2;MLEAF=0.250;MQ=20.45;MQ0=0;MQRankSum=2.244;QD=2.34;ReadPosRankSum=-0.866;SB=13.95 GT:AD:DP:GQ:PL 0/1:14,3:18:68:68,0,70 0/0:16,0:17:3:0,3,22 0/0:20,0:22:6:0,6,47 0/1:10,2:13:38:44,0,38 +chr3 9944725 . C A 32.75 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.756;DP=109;Dels=0.03;FS=18.998;HaplotypeScore=6.6085;MLEAC=1;MLEAF=0.125;MQ=30.09;MQ0=0;MQRankSum=-0.804;QD=1.56;ReadPosRankSum=-1.658;SB=-7.885e+00 GT:AD:DP:GQ:PL 0/1:16,5:21:68:68,0,331 0/0:25,0:25:42:0,42,490 0/0:35,3:38:9:0,9,710 0/0:20,2:22:3:0,3,549 +chr3 9953260 . C A 815.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.715;DP=230;Dels=0.00;FS=105.318;HaplotypeScore=7.1350;MLEAC=4;MLEAF=0.500;MQ=30.21;MQ0=0;MQRankSum=-2.429;QD=3.55;ReadPosRankSum=-1.015;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:43,9:52:99:145,0,883 0/1:41,12:53:99:258,0,816 0/1:61,12:73:99:215,0,1291 0/1:39,13:52:99:240,0,842 +chr3 9970003 . C A 41.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.993;DP=88;Dels=0.01;FS=60.513;HaplotypeScore=10.4708;MLEAC=4;MLEAF=0.500;MQ=29.91;MQ0=0;MQRankSum=-4.525;QD=0.61;ReadPosRankSum=3.196;SB=-3.307e+00 GT:AD:DP:GQ:PL 0/1:20,4:24:8:8,0,407 0/1:24,6:30:34:34,0,546 0/0:16,2:18:0:0,0,291 0/1:11,4:15:39:39,0,262 +chr3 9972493 rs279545 G A 751.16 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.589;DB;DP=26;Dels=0.00;FS=13.802;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=32.26;MQ0=0;MQRankSum=1.589;QD=28.89;ReadPosRankSum=-1.011;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:24:291,24,0 1/1:1,7:8:18:215,18,0 1/1:1,4:5:12:147,12,0 1/1:1,4:5:12:137,12,0 +chr3 9974320 . G C 63.69 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.743;DP=80;Dels=0.03;FS=9.877;HaplotypeScore=17.1656;MLEAC=3;MLEAF=0.375;MQ=25.54;MQ0=0;MQRankSum=-0.273;QD=1.12;ReadPosRankSum=-0.248;SB=-7.350e+00 GT:AD:DP:GQ:PL 0/1:15,1:16:2:2,0,218 0/1:22,4:26:69:69,0,199 0/0:22,0:23:33:0,33,301 0/1:11,2:13:33:33,0,150 +chr3 10016003 . A G 137.66 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.808;DP=85;Dels=0.00;FS=2.401;HaplotypeScore=2.3106;MLEAC=3;MLEAF=0.375;MQ=34.01;MQ0=0;MQRankSum=-3.418;QD=2.26;ReadPosRankSum=1.915;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,5:29:79:79,0,554 0/1:16,6:22:84:84,0,336 0/0:22,2:24:8:0,8,665 0/1:9,1:10:17:17,0,133 +chr3 10258514 rs2302861 T C 296.63 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.176;DB;DP=86;Dels=0.00;FS=2.627;HaplotypeScore=4.6355;MLEAC=5;MLEAF=0.625;MQ=26.16;MQ0=0;MQRankSum=-1.185;QD=3.45;ReadPosRankSum=0.893;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,4:24:20:20,0,360 1/1:8,11:19:24:251,24,0 0/1:13,6:20:33:33,0,323 0/1:20,3:23:38:38,0,264 +chr3 10291287 . T G 56.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.916;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9510;MLEAC=3;MLEAF=0.375;MQ=31.58;MQ0=0;MQRankSum=1.799;QD=0.80;ReadPosRankSum=0.690;SB=-1.780e-02 GT:AD:DP:GQ:PL 0/1:24,2:26:29:29,0,396 0/1:23,3:26:37:37,0,489 0/1:17,2:19:34:34,0,325 0/0:13,0:14:18:0,18,178 +chr3 10302479 rs402330 G A 343.92 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.024;DB;DP=15;Dels=0.00;FS=12.430;HaplotypeScore=0.2629;MLEAC=6;MLEAF=1.00;MQ=26.65;MQ0=0;MQRankSum=2.491;QD=24.57;ReadPosRankSum=1.246;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,6:6:18:200,18,0 1/1:2,2:4:6:70,6,0 1/1:1,3:4:9:111,9,0 ./. +chr3 10311773 rs715827 A G 260.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.532;DB;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=2.4602;MLEAC=1;MLEAF=0.125;MQ=36.39;MQ0=0;MQRankSum=-2.986;QD=9.67;ReadPosRankSum=-0.036;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:69:0,69,916 0/1:14,12:26:99:297,0,387 0/0:30,0:30:81:0,81,1055 0/0:26,0:26:69:0,69,900 +chr3 10328453 rs4684677 T A 152.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.203;DB;DP=96;Dels=0.00;FS=3.688;HaplotypeScore=1.7005;MLEAC=1;MLEAF=0.125;MQ=33.43;MQ0=0;MQRankSum=-0.202;QD=6.12;ReadPosRankSum=0.691;SB=-5.797e+01 GT:AD:DP:GQ:PL 0/0:26,0:26:72:0,72,910 0/1:18,7:25:99:189,0,476 0/0:25,0:26:63:0,63,787 0/0:19,0:19:45:0,45,512 +chr3 10331586 . T G 51.30 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.867;DP=159;Dels=0.02;FS=2.151;HaplotypeScore=6.0757;MLEAC=2;MLEAF=0.250;MQ=30.65;MQ0=0;MQRankSum=-2.414;QD=0.60;ReadPosRankSum=-1.201;SB=-1.604e+00 GT:AD:DP:GQ:PL 0/0:34,2:36:46:0,46,1065 0/1:36,3:40:3:3,0,706 0/1:37,6:43:85:85,0,716 0/0:35,2:37:7:0,7,637 +chr3 11058839 . G T 73.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.713;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1190;MLEAC=4;MLEAF=0.500;MQ=25.08;MQ0=0;MQRankSum=-2.398;QD=2.17;ReadPosRankSum=3.610;SB=-9.387e-03 GT:AD:DP:GQ:PL 0/1:5,3:8:53:56,0,53 0/1:9,1:10:4:4,0,175 0/1:1,1:2:20:20,0,28 0/1:8,5:14:35:35,0,131 +chr3 11224713 rs11128542 C G 50.77 . AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=25.38;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6:82,6,0 ./. ./. +chr3 11300707 rs901865 T C 2615.03 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.326;DB;DP=98;Dels=0.00;FS=5.515;HaplotypeScore=2.7321;MLEAC=8;MLEAF=1.00;MQ=33.22;MQ0=0;MQRankSum=0.971;QD=26.68;ReadPosRankSum=1.639;SB=-4.695e+02 GT:AD:DP:GQ:PL 1/1:3,18:21:17:611,17,0 1/1:3,17:20:17:581,17,0 1/1:9,18:27:25:633,25,0 1/1:7,23:30:69:829,69,0 +chr3 11920325 rs392982 A C 532.16 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.995;DB;DP=97;Dels=0.01;FS=30.424;HaplotypeScore=3.8515;MLEAC=7;MLEAF=0.875;MQ=17.55;MQ0=0;MQRankSum=0.373;QD=5.49;ReadPosRankSum=1.713;SB=-1.312e+02 GT:AD:DP:GQ:PL 1/1:5,19:24:18:190,18,0 1/1:4,19:23:12:142,12,0 0/1:4,30:34:27:135,0,27 1/1:5,10:15:9:109,9,0 +chr3 11926423 rs2055283 A G 78.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.299;DB;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.2395;MLEAC=3;MLEAF=0.375;MQ=17.48;MQ0=0;MQRankSum=-4.295;QD=1.27;ReadPosRankSum=0.996;SB=-3.674e+01 GT:AD:DP:GQ:PL 0/1:7,7:14:56:56,0,67 0/1:14,11:25:47:47,0,89 0/1:16,7:23:17:17,0,144 0/0:5,3:8:3:0,3,42 +chr3 12188466 . T G 35.28 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.860;DP=107;Dels=0.01;FS=15.385;HaplotypeScore=4.7053;MLEAC=2;MLEAF=0.250;MQ=17.35;MQ0=0;MQRankSum=0.879;QD=0.68;ReadPosRankSum=0.194;SB=3.74 GT:AD:DP:GQ:PL 0/0:28,0:28:9:0,9,114 0/1:23,3:26:39:39,0,47 0/0:25,1:26:9:0,9,91 0/1:24,2:26:37:37,0,52 +chr3 12299957 rs1822535 G T 35.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.702;DB;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.1134;MLEAC=1;MLEAF=0.125;MQ=25.57;MQ0=0;MQRankSum=1.629;QD=1.06;ReadPosRankSum=0.638;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,5:34:72:72,0,542 0/0:42,0:42:96:0,96,947 0/0:44,0:44:81:0,81,819 0/0:33,0:33:66:0,66,653 +chr3 12613519 . G T 79 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.356;DP=21;Dels=0.00;FS=3.039;HaplotypeScore=4.2393;MLEAC=3;MLEAF=0.500;MQ=22.90;MQ0=0;MQRankSum=0.922;QD=4.16;ReadPosRankSum=0.813;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:51:51,0,51 0/1:3,3:6:13:58,0,13 0/1:6,1:7:8:8,0,101 ./. +chr3 12641507 . A C 31.30 . AC=1;AF=0.167;AN=6;BaseQRankSum=-0.533;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.167;MQ=33.15;MQ0=0;MQRankSum=-2.096;QD=2.85;ReadPosRankSum=-0.036;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:9:0,9,103 0/0:18,1:19:3:0,3,382 0/1:8,3:11:65:65,0,102 ./. +chr3 12854708 . C T 30.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.710;DP=57;Dels=0.02;FS=4.140;HaplotypeScore=7.2874;MLEAC=3;MLEAF=0.375;MQ=21.15;MQ0=0;MQRankSum=0.020;QD=0.74;ReadPosRankSum=0.670;SB=-6.121e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:41:41,0,127 0/1:13,2:15:13:13,0,36 0/1:13,1:14:18:18,0,68 0/0:13,3:16:6:0,6,65 +chr3 12881233 rs3901334 A G 352.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.420;DB;DP=34;Dels=0.00;FS=5.968;HaplotypeScore=0.9894;MLEAC=4;MLEAF=0.500;MQ=28.52;MQ0=0;MQRankSum=2.187;QD=10.37;ReadPosRankSum=1.343;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,8:13:99:246,0,99 0/1:4,2:6:61:67,0,61 0/1:9,1:10:19:19,0,152 0/1:3,2:5:57:63,0,57 +chr3 12953051 . C A 60.25 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.379;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1308;MLEAC=2;MLEAF=0.250;MQ=32.68;MQ0=0;MQRankSum=-3.155;QD=1.21;ReadPosRankSum=0.737;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,3:24:13:13,0,394 0/0:28,1:29:33:0,33,625 0/0:28,1:29:66:0,66,855 0/1:20,6:26:88:88,0,405 +chr3 13376917 . C T 42.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.963;DP=71;Dels=0.01;FS=40.242;HaplotypeScore=2.4037;MLEAC=3;MLEAF=0.375;MQ=29.89;MQ0=0;MQRankSum=-2.110;QD=0.78;ReadPosRankSum=-0.514;SB=-1.829e+00 GT:AD:DP:GQ:PL 0/0:15,0:15:36:0,36,407 0/1:18,2:20:23:23,0,371 0/1:19,4:23:33:33,0,415 0/1:10,2:12:30:30,0,251 +chr3 14173963 rs4685074 G T 438.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.037;DB;DP=73;Dels=0.03;FS=2.471;HaplotypeScore=7.2281;MLEAC=4;MLEAF=0.500;MQ=33.85;MQ0=0;MQRankSum=-0.562;QD=6.01;ReadPosRankSum=0.638;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:21:99:114,0,383 0/1:9,4:13:99:119,0,165 0/1:19,3:22:55:55,0,495 0/1:9,6:15:99:193,0,199 +chr3 14176138 . A C 42.27 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.055;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.6108;MLEAC=3;MLEAF=0.375;MQ=26.88;MQ0=0;MQRankSum=-0.535;QD=1.06;ReadPosRankSum=0.498;SB=-1.197e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:29:29,0,63 0/1:16,2:18:44:44,0,154 0/0:16,0:16:18:0,18,198 0/1:6,1:7:12:12,0,73 +chr3 14536385 . C A 170.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.129;DP=87;Dels=0.00;FS=13.203;HaplotypeScore=12.9783;MLEAC=4;MLEAF=0.500;MQ=25.16;MQ0=0;MQRankSum=-0.807;QD=1.96;ReadPosRankSum=1.315;SB=-1.528e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:36:36,0,213 0/1:10,6:16:46:107,0,46 0/1:22,5:28:39:39,0,338 0/1:25,3:28:31:31,0,343 +chr3 14548990 . G C 531.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.134;DP=81;Dels=0.00;FS=2.124;HaplotypeScore=2.7124;MLEAC=3;MLEAF=0.375;MQ=25.65;MQ0=0;MQRankSum=0.514;QD=8.18;ReadPosRankSum=1.331;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,8:18:95:196,0,95 0/1:18,10:28:99:214,0,120 0/1:9,10:19:99:165,0,121 0/0:13,2:16:21:0,21,209 +chr3 14563258 rs4234526 A G 434.65 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.342;DB;DP=21;Dels=0.00;FS=9.745;HaplotypeScore=0.2447;MLEAC=5;MLEAF=0.625;MQ=31.69;MQ0=0;MQRankSum=0.324;QD=24.15;ReadPosRankSum=0.602;SB=-2.206e+02 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,65 0/1:4,2:6:65:65,0,69 1/1:0,8:8:24:295,24,0 1/1:0,4:4:12:123,12,0 +chr3 14566969 . G A 90.87 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.577;DP=174;Dels=0.01;FS=12.016;HaplotypeScore=18.5166;MLEAC=2;MLEAF=0.250;MQ=26.45;MQ0=0;MQRankSum=-0.913;QD=0.95;ReadPosRankSum=0.218;SB=-4.197e+01 GT:AD:DP:GQ:PL 0/0:40,1:41:31:0,31,537 0/1:37,6:43:99:123,0,247 0/1:48,4:52:7:7,0,343 0/0:34,1:36:24:0,24,240 +chr3 14708918 rs2280383 A G 4150.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.847;DB;DP=123;Dels=0.01;FS=14.054;HaplotypeScore=0.4334;MLEAC=8;MLEAF=1.00;MQ=33.46;MQ0=0;MQRankSum=1.812;QD=33.74;ReadPosRankSum=0.789;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:69:854,69,0 1/1:3,26:29:52:925,52,0 1/1:0,35:35:99:1287,105,0 1/1:4,30:34:71:1084,71,0 +chr3 14862763 . A T 228.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.105;DP=313;Dels=0.00;FS=115.832;HaplotypeScore=7.8160;MLEAC=4;MLEAF=0.500;MQ=18.26;MQ0=0;MQRankSum=3.428;QD=0.73;ReadPosRankSum=2.631;SB=-1.242e-02 GT:AD:DP:GQ:PL 0/1:66,7:73:99:106,0,208 0/1:79,8:87:51:51,0,376 0/1:74,4:78:35:35,0,304 0/1:64,11:75:79:79,0,281 +chr3 15094853 . G C 256.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.028;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=10.2135;MLEAC=4;MLEAF=0.500;MQ=22.35;MQ0=0;MQRankSum=-0.138;QD=3.21;ReadPosRankSum=2.175;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,5:14:49:49,0,90 0/1:18,6:24:51:51,0,140 0/1:10,6:16:69:110,0,69 0/1:18,7:25:44:89,0,44 +chr3 15301210 . A C 52.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.771;DP=121;Dels=0.01;FS=7.069;HaplotypeScore=19.3911;MLEAC=3;MLEAF=0.375;MQ=29.27;MQ0=0;MQRankSum=-1.738;QD=0.54;ReadPosRankSum=-0.039;SB=5.498e-03 GT:AD:DP:GQ:PL 0/1:33,3:36:18:18,0,338 0/1:30,2:32:17:17,0,341 0/0:24,0:25:18:0,18,196 0/1:22,5:27:60:60,0,289 +chr3 15301363 rs2291853 G A 2105.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.713;DB;DP=154;Dels=0.01;FS=2.880;HaplotypeScore=1.4671;MLEAC=4;MLEAF=0.500;MQ=38.22;MQ0=0;MQRankSum=-3.995;QD=18.47;ReadPosRankSum=1.124;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,102,1371 1/1:2,38:40:80:1456,80,0 0/1:29,14:43:99:419,0,1015 0/1:20,9:29:99:279,0,667 +chr3 15572955 rs10865733 A G 45.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.537;DB;DP=10;Dels=0.00;FS=2.730;HaplotypeScore=0.7887;MLEAC=4;MLEAF=1.00;MQ=16.63;MQ0=0;MQRankSum=1.537;QD=7.50;ReadPosRankSum=0.406;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:36,3,0 ./. 1/1:2,2:4:3:42,3,0 ./. +chr3 15602335 . A T 91.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.647;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4340;MLEAC=2;MLEAF=0.250;MQ=29.99;MQ0=0;MQRankSum=-3.434;QD=3.16;ReadPosRankSum=2.072;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,7:23:99:111,0,361 0/0:28,3:31:21:0,21,577 0/0:35,1:36:43:0,43,770 0/1:5,1:6:22:22,0,58 +chr3 15727468 . C G 77.75 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.657;DP=255;Dels=0.02;FS=4.212;HaplotypeScore=10.2187;MLEAC=1;MLEAF=0.125;MQ=32.13;MQ0=0;MQRankSum=-1.685;QD=1.13;ReadPosRankSum=1.563;SB=-4.738e+00 GT:AD:DP:GQ:PL 0/0:68,5:73:3:0,3,1459 0/1:58,9:68:99:113,0,606 0/0:72,4:76:58:0,58,1367 0/0:31,1:34:9:0,9,401 +chr3 16264037 rs2292169 T A 1242.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.011;DB;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=1.4157;MLEAC=3;MLEAF=0.375;MQ=38.89;MQ0=0;MQRankSum=-5.280;QD=8.88;ReadPosRankSum=2.560;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,14:44:99:379,0,932 0/0:52,0:52:99:0,153,2071 0/1:41,22:63:99:648,0,1266 0/1:24,9:33:99:259,0,678 +chr3 17051328 rs7653834 T C 5121.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.040;DB;DP=139;Dels=0.01;FS=4.862;HaplotypeScore=3.5951;MLEAC=8;MLEAF=1.00;MQ=38.87;MQ0=0;MQRankSum=3.244;QD=36.84;ReadPosRankSum=0.435;SB=-2.363e+03 GT:AD:DP:GQ:PL 1/1:3,41:44:99:1647,123,0 1/1:4,33:37:96:1341,96,0 1/1:2,43:45:99:1730,129,0 1/1:1,10:12:30:403,30,0 +chr3 17051914 . A T 499.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.054;DP=158;Dels=0.01;FS=117.757;HaplotypeScore=5.4877;MLEAC=4;MLEAF=0.500;MQ=36.25;MQ0=0;MQRankSum=-4.701;QD=3.16;ReadPosRankSum=2.682;SB=-1.252e-02 GT:AD:DP:GQ:PL 0/1:34,9:43:99:203,0,1038 0/1:41,6:47:66:66,0,1184 0/1:38,12:50:99:236,0,1020 0/1:13,4:17:37:37,0,377 +chr3 17053363 . T A 262.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.508;DP=165;Dels=0.01;FS=108.760;HaplotypeScore=15.3083;MLEAC=2;MLEAF=0.250;MQ=31.15;MQ0=0;MQRankSum=-4.319;QD=3.16;ReadPosRankSum=2.294;SB=-6.187e-01 GT:AD:DP:GQ:PL 0/0:39,3:42:68:0,68,1077 0/1:29,13:42:99:228,0,681 0/1:33,8:41:75:75,0,695 0/0:37,2:39:7:0,7,676 +chr3 17226559 . T C 44.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.928;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.7732;MLEAC=2;MLEAF=0.250;MQ=31.20;MQ0=0;MQRankSum=-0.787;QD=0.78;ReadPosRankSum=2.704;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,3:29:48:48,0,491 0/1:24,3:28:38:38,0,506 0/0:30,1:31:22:0,22,398 0/0:17,0:17:21:0,21,237 +chr3 17469973 . A G 151.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.139;DP=72;Dels=0.00;FS=27.778;HaplotypeScore=1.2838;MLEAC=4;MLEAF=0.500;MQ=32.42;MQ0=0;MQRankSum=-0.513;QD=2.11;ReadPosRankSum=2.364;SB=0.019 GT:AD:DP:GQ:PL 0/1:22,3:25:62:62,0,279 0/1:15,3:18:27:27,0,225 0/1:16,5:21:90:90,0,155 0/1:7,1:8:15:15,0,75 +chr3 17919094 rs112401749 G C 98.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.055;DB;DP=114;Dels=0.01;FS=25.863;HaplotypeScore=3.4029;MLEAC=4;MLEAF=0.500;MQ=21.43;MQ0=0;MQRankSum=-0.195;QD=0.86;ReadPosRankSum=0.225;SB=-7.523e-01 GT:AD:DP:GQ:PL 0/1:25,3:28:37:37,0,199 0/1:24,7:31:67:67,0,223 0/1:23,5:28:31:31,0,231 0/1:22,4:26:5:5,0,126 +chr3 18419859 rs10460976 G A 4566.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.365;DB;DP=148;Dels=0.03;FS=40.784;HaplotypeScore=5.5234;MLEAC=8;MLEAF=1.00;MQ=31.58;MQ0=0;MQRankSum=2.683;QD=30.85;ReadPosRankSum=4.198;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,40:44:99:1457,120,0 1/1:2,37:39:99:1290,108,0 1/1:4,44:48:99:1522,129,0 1/1:4,9:13:27:297,27,0 +chr3 18427924 rs9845303 G T 3427.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.865;DB;DP=112;Dels=0.00;FS=4.872;HaplotypeScore=3.7396;MLEAC=8;MLEAF=1.00;MQ=32.63;MQ0=0;MQRankSum=2.155;QD=30.60;ReadPosRankSum=2.882;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:2,18:20:54:665,54,0 1/1:4,25:29:69:848,69,0 1/1:0,30:30:90:1117,90,0 0/1:5,27:33:4:797,0,4 +chr3 19924181 . G A 535.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.691;DP=215;Dels=0.00;FS=181.169;HaplotypeScore=4.5784;MLEAC=4;MLEAF=0.500;MQ=38.44;MQ0=0;MQRankSum=-6.973;QD=2.49;ReadPosRankSum=1.262;SB=-1.114e-02 GT:AD:DP:GQ:PL 0/1:54,7:61:74:74,0,1675 0/1:49,16:65:99:266,0,1609 0/1:52,12:64:99:179,0,1677 0/1:21,4:25:59:59,0,562 +chr3 19992435 . A C 45.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.445;DP=131;Dels=0.00;FS=9.053;HaplotypeScore=1.6861;MLEAC=3;MLEAF=0.375;MQ=13.02;MQ0=0;MQRankSum=3.281;QD=0.48;ReadPosRankSum=-0.854;SB=-7.127e-02 GT:AD:DP:GQ:PL 0/1:36,1:37:26:27,0,26 0/0:37,0:37:6:0,6,47 0/1:40,1:41:19:19,0,163 0/1:14,2:16:41:41,0,47 +chr3 20027221 . A T 32.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.769;DP=400;Dels=0.00;FS=11.849;HaplotypeScore=5.7344;MLEAC=1;MLEAF=0.125;MQ=36.96;MQ0=0;MQRankSum=-2.477;QD=1.50;ReadPosRankSum=-3.707;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:113,1:114:99:0,227,3307 0/0:108,2:112:99:0,195,3195 0/0:149,3:152:99:0,267,4388 0/1:19,3:22:69:69,0,377 +chr3 20143020 rs4858155 G C 2622.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.354;DB;DP=96;Dels=0.00;FS=15.163;HaplotypeScore=1.0303;MLEAC=7;MLEAF=0.875;MQ=34.10;MQ0=0;MQRankSum=-2.655;QD=27.32;ReadPosRankSum=1.490;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,29:32:87:1038,87,0 0/1:15,13:28:99:358,0,501 1/1:0,25:25:72:896,72,0 1/1:0,11:11:33:375,33,0 +chr3 20181753 . T A 64.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.214;DP=143;Dels=0.03;FS=105.465;HaplotypeScore=8.8899;MLEAC=2;MLEAF=0.250;MQ=34.06;MQ0=0;MQRankSum=-0.223;QD=0.73;ReadPosRankSum=-1.623;SB=3.63 GT:AD:DP:GQ:PL 0/1:37,5:42:55:55,0,1142 0/1:40,4:44:51:51,0,983 0/0:40,2:42:24:0,24,1069 0/0:11,0:11:27:0,27,308 +chr3 21706416 . T G 78.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.553;DP=85;Dels=0.04;FS=10.769;HaplotypeScore=25.0767;MLEAC=3;MLEAF=0.375;MQ=18.31;MQ0=0;MQRankSum=-1.553;QD=1.24;ReadPosRankSum=1.031;SB=-1.312e+00 GT:AD:DP:GQ:PL 0/0:22,0:22:6:0,6,58 0/1:17,4:21:74:74,0,85 0/1:14,6:20:13:13,0,74 0/1:15,4:19:33:33,0,107 +chr3 24206720 . C G 931.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.419;DP=422;Dels=0.00;FS=429.513;HaplotypeScore=5.5389;MLEAC=4;MLEAF=0.500;MQ=38.00;MQ0=0;MQRankSum=-5.194;QD=2.21;ReadPosRankSum=4.936;SB=0.502 GT:AD:DP:GQ:PL 0/1:79,18:97:99:373,0,2416 0/1:95,17:112:99:334,0,2787 0/1:98,10:108:79:79,0,2761 0/1:91,14:105:99:188,0,2615 +chr3 24231983 . T G 31.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=8;Dels=0.00;FS=3.979;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=16.79;MQ0=0;MQRankSum=0.736;QD=7.94;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:63,6,0 ./. ./. ./. +chr3 25366144 rs322666 C G 254.54 . AC=5;AF=0.833;AN=6;BaseQRankSum=3.355;DB;DP=20;Dels=0.05;FS=14.880;HaplotypeScore=1.0467;MLEAC=5;MLEAF=0.833;MQ=26.41;MQ0=0;MQRankSum=2.737;QD=14.14;ReadPosRankSum=0.971;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,2:7:65:65,0,79 1/1:4,4:8:12:152,12,0 1/1:0,3:3:6:78,6,0 ./. +chr3 25635888 . A G 420.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.015;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9671;MLEAC=4;MLEAF=0.500;MQ=34.88;MQ0=0;MQRankSum=1.530;QD=4.16;ReadPosRankSum=5.519;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,6:28:99:140,0,187 0/1:23,9:32:99:199,0,226 0/1:24,4:28:87:87,0,191 0/1:11,2:13:37:37,0,151 +chr3 25642588 . C T 94.09 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.074;DP=211;Dels=0.00;FS=16.183;HaplotypeScore=3.9160;MLEAC=1;MLEAF=0.125;MQ=36.50;MQ0=0;MQRankSum=-5.172;QD=4.48;ReadPosRankSum=-0.513;SB=-5.455e+00 GT:AD:DP:GQ:PL 0/0:57,3:60:74:0,74,1771 0/0:48,4:52:11:0,11,1286 0/0:74,2:77:99:0,140,2291 0/1:14,6:21:99:130,0,322 +chr3 25678750 . T C 46.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.263;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.8343;MLEAC=3;MLEAF=0.375;MQ=27.39;MQ0=0;MQRankSum=0.239;QD=2.76;ReadPosRankSum=-0.307;SB=-3.271e+01 GT:AD:DP:GQ:PL 0/1:6,1:7:18:18,0,69 0/0:13,0:13:27:0,27,328 0/1:5,2:7:46:46,0,133 0/1:2,1:3:19:26,0,19 +chr3 27216266 . C G 159.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.507;DP=218;Dels=0.00;FS=27.785;HaplotypeScore=19.4358;MLEAC=3;MLEAF=0.375;MQ=28.66;MQ0=0;MQRankSum=-2.067;QD=0.94;ReadPosRankSum=-0.399;SB=0.920 GT:AD:DP:GQ:PL 0/0:46,2:48:40:0,40,896 0/1:51,9:61:64:64,0,925 0/1:56,5:61:68:68,0,893 0/1:42,5:47:71:71,0,597 +chr3 27433237 . T C 59.80 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.372;DP=44;Dels=0.00;FS=2.754;HaplotypeScore=5.4596;MLEAC=1;MLEAF=0.167;MQ=25.91;MQ0=0;MQRankSum=0.796;QD=2.39;ReadPosRankSum=0.053;SB=19.48 GT:AD:DP:GQ:PL 0/0:15,0:15:15:0,15,148 0/1:11,1:14:21:21,0,53 0/1:8,3:11:47:77,0,47 ./. +chr3 27478070 . A T 101.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.624;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=2.7066;MLEAC=4;MLEAF=0.500;MQ=31.85;MQ0=0;MQRankSum=-0.198;QD=1.36;ReadPosRankSum=0.806;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:53:53,0,173 0/1:23,3:26:51:51,0,172 0/1:16,1:17:14:14,0,52 0/1:8,1:9:26:26,0,49 +chr3 28616657 . A C 212.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.934;DP=55;Dels=0.02;FS=17.076;HaplotypeScore=2.3631;MLEAC=4;MLEAF=0.500;MQ=29.27;MQ0=0;MQRankSum=0.101;QD=3.87;ReadPosRankSum=0.101;SB=-1.344e-01 GT:AD:DP:GQ:PL 0/1:8,1:9:21:21,0,174 0/1:13,4:17:93:116,0,93 0/1:11,4:15:99:105,0,134 0/1:12,1:13:13:13,0,98 +chr3 29129898 . A G 36.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.526;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9696;MLEAC=1;MLEAF=0.125;MQ=34.43;MQ0=0;MQRankSum=-0.372;QD=2.18;ReadPosRankSum=-0.295;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:31,0:31:60:0,60,722 0/0:23,0:23:57:0,57,656 0/0:24,0:24:42:0,42,473 0/1:14,3:17:73:73,0,213 +chr3 29432605 rs7645535 A G 398.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.771;DB;DP=43;Dels=0.05;FS=5.610;HaplotypeScore=2.0201;MLEAC=4;MLEAF=0.500;MQ=33.27;MQ0=0;MQRankSum=-0.579;QD=13.29;ReadPosRankSum=1.018;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:30:0,30,406 1/1:3,7:10:21:230,21,0 0/1:7,4:11:99:122,0,141 0/1:4,3:7:95:95,0,111 +chr3 30713514 . C T 42.57 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.778;DP=194;Dels=0.00;FS=33.647;HaplotypeScore=4.3316;MLEAC=1;MLEAF=0.125;MQ=34.42;MQ0=0;MQRankSum=-3.082;QD=0.83;ReadPosRankSum=-2.435;SB=-7.001e+00 GT:AD:DP:GQ:PL 0/0:45,2:47:45:0,45,1133 0/1:46,5:51:78:78,0,811 0/0:51,1:52:79:0,79,1220 0/0:39,4:44:3:0,3,958 +chr3 31621559 . T G 55.24 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.893;DP=195;Dels=0.00;FS=39.916;HaplotypeScore=0.2416;MLEAC=2;MLEAF=0.250;MQ=36.69;MQ0=0;MQRankSum=-0.069;QD=0.66;ReadPosRankSum=-0.063;SB=-2.436e+00 GT:AD:DP:GQ:PL 0/1:56,6:62:67:67,0,1128 0/0:55,3:58:6:0,6,1014 0/0:52,1:53:90:0,90,1337 0/1:20,2:22:29:29,0,346 +chr3 32493988 . C G 117.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.916;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=14.4481;MLEAC=3;MLEAF=0.375;MQ=31.26;MQ0=0;MQRankSum=0.220;QD=1.00;ReadPosRankSum=-1.202;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,6:39:99:101,0,658 0/1:35,3:38:20:20,0,670 0/1:37,3:40:40:40,0,629 0/0:37,3:41:29:0,29,739 +chr3 32549625 . C G 48.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.807;DP=47;Dels=0.02;FS=11.137;HaplotypeScore=1.5718;MLEAC=3;MLEAF=0.375;MQ=23.38;MQ0=0;MQRankSum=0.223;QD=1.33;ReadPosRankSum=2.700;SB=0.043 GT:AD:DP:GQ:PL 0/1:12,2:14:37:37,0,205 0/0:8,2:10:6:0,6,67 0/1:12,2:14:31:31,0,80 0/1:6,2:8:16:22,0,16 +chr3 32860505 . C G 146.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.720;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=2.2155;MLEAC=3;MLEAF=0.375;MQ=27.78;MQ0=0;MQRankSum=-1.187;QD=1.83;ReadPosRankSum=-2.696;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:54:0,54,619 0/1:21,8:29:86:86,0,279 0/1:27,5:33:67:67,0,503 0/1:15,2:17:37:37,0,143 +chr3 32915402 . G T 56.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.533;DP=216;Dels=0.00;FS=19.266;HaplotypeScore=2.4554;MLEAC=1;MLEAF=0.125;MQ=33.95;MQ0=0;MQRankSum=-4.334;QD=0.98;ReadPosRankSum=-0.538;SB=-4.150e+00 GT:AD:DP:GQ:PL 0/0:51,3:54:26:0,26,1202 0/0:49,2:51:54:0,54,1146 0/0:51,2:53:85:0,85,1554 0/1:51,7:58:93:93,0,1025 +chr3 32994872 . G A 232.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.427;DP=66;Dels=0.00;FS=22.109;HaplotypeScore=1.6801;MLEAC=3;MLEAF=0.375;MQ=31.18;MQ0=0;MQRankSum=-1.843;QD=5.16;ReadPosRankSum=1.351;SB=1.19 GT:AD:DP:GQ:PL 0/0:19,2:21:10:0,10,387 0/1:6,4:10:99:105,0,119 0/1:15,4:19:77:77,0,323 0/1:11,5:16:93:93,0,143 +chr3 33055721 rs4302331 A G 1588 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.015;DB;DP=84;Dels=0.01;FS=20.418;HaplotypeScore=3.4470;MLEAC=8;MLEAF=1.00;MQ=26.72;MQ0=0;MQRankSum=3.705;QD=18.90;ReadPosRankSum=2.040;SB=-4.259e+02 GT:AD:DP:GQ:PL 1/1:3,22:25:63:689,63,0 1/1:8,10:18:30:330,30,0 1/1:8,14:22:36:420,36,0 1/1:8,10:18:18:188,18,0 +chr3 33425546 . C A 33.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.207;DP=129;Dels=0.01;FS=53.659;HaplotypeScore=6.7267;MLEAC=1;MLEAF=0.125;MQ=33.23;MQ0=0;MQRankSum=-3.700;QD=0.94;ReadPosRankSum=-0.383;SB=-5.019e+00 GT:AD:DP:GQ:PL 0/0:26,2:28:16:0,16,736 0/1:28,7:35:69:69,0,717 0/0:29,0:29:63:0,63,815 0/0:33,1:36:49:0,49,795 +chr3 33450911 . A T 63.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.715;DP=89;Dels=0.00;FS=18.401;HaplotypeScore=10.9663;MLEAC=2;MLEAF=0.250;MQ=25.13;MQ0=0;MQRankSum=1.020;QD=1.10;ReadPosRankSum=1.442;SB=4.10 GT:AD:DP:GQ:PL 0/0:22,0:22:24:0,24,252 0/1:25,4:29:72:72,0,202 0/1:27,2:29:33:33,0,159 0/0:8,1:9:9:0,9,81 +chr3 33673894 . G C 63.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.356;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=14.4830;MLEAC=4;MLEAF=0.500;MQ=19.73;MQ0=0;MQRankSum=0.968;QD=2.78;ReadPosRankSum=-1.201;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:15:9:0,9,111 0/0:16,0:16:6:0,6,54 1/1:16,3:19:9:84,9,0 1/1:3,1:4:3:26,3,0 +chr3 33866929 rs12495243 G T 128.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.284;DB;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9667;MLEAC=1;MLEAF=0.125;MQ=36.04;MQ0=0;MQRankSum=-2.321;QD=7.54;ReadPosRankSum=0.718;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:45:0,45,608 0/1:11,6:17:99:164,0,229 0/0:12,0:12:36:0,36,464 0/0:3,0:3:9:0,9,115 +chr3 36872653 rs113360637 C T 366.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.717;DB;DP=284;Dels=0.00;FS=135.645;HaplotypeScore=13.2137;MLEAC=4;MLEAF=0.500;MQ=30.01;MQ0=0;MQRankSum=0.290;QD=1.29;ReadPosRankSum=-2.348;SB=-1.925e-02 GT:AD:DP:GQ:PL 0/1:62,9:71:99:149,0,972 0/1:64,6:70:31:31,0,1312 0/1:67,11:78:99:200,0,1213 0/1:59,6:65:29:29,0,1317 +chr3 36898958 . T A 183.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.222;DP=136;Dels=0.02;FS=66.846;HaplotypeScore=12.1680;MLEAC=3;MLEAF=0.375;MQ=22.04;MQ0=0;MQRankSum=0.314;QD=1.84;ReadPosRankSum=2.866;SB=-3.038e+00 GT:AD:DP:GQ:PL 0/1:23,7:30:99:104,0,255 0/1:27,7:34:99:111,0,150 0/0:33,2:35:5:0,5,369 0/1:29,5:34:10:10,0,356 +chr3 37034550 . T A 80.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.231;DP=182;Dels=0.00;FS=46.923;HaplotypeScore=9.6993;MLEAC=2;MLEAF=0.250;MQ=32.75;MQ0=0;MQRankSum=-1.587;QD=0.95;ReadPosRankSum=0.093;SB=-1.576e+00 GT:AD:DP:GQ:PL 0/0:47,1:48:90:0,90,1353 0/1:40,5:45:35:35,0,985 0/0:46,3:49:38:0,38,1292 0/1:35,5:40:87:87,0,589 +chr3 37058214 . C A 127.20 . AC=8;AF=1.00;AN=8;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.9744;MLEAC=7;MLEAF=0.875;MQ=25.01;MQ0=0;QD=10.60;SB=16.91 GT:AD:DP:GQ:PL 1/1:0,2:2:6:62,6,0 1/1:2,2:4:6:45,6,0 1/1:2,1:4:3:26,3,0 1/1:1,1:2:3:31,3,0 +chr3 37116575 . C T 268.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.130;DP=79;Dels=0.00;FS=54.139;HaplotypeScore=3.5605;MLEAC=4;MLEAF=0.500;MQ=27.68;MQ0=0;MQRankSum=-2.554;QD=3.40;ReadPosRankSum=-0.453;SB=-1.168e-02 GT:AD:DP:GQ:PL 0/1:16,7:23:99:121,0,297 0/1:12,7:19:73:73,0,187 0/1:21,6:28:63:63,0,307 0/1:7,2:9:44:54,0,44 +chr3 37170750 rs3733029 G C 88.27 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.361;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=30.61;MQ0=0;MQRankSum=-1.159;QD=9.81;ReadPosRankSum=-0.729;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:39,3,0 0/1:1,2:3:29:29,0,36 0/1:3,2:5:59:59,0,71 ./. +chr3 37330641 . A T 79.30 . AC=2;AF=0.333;AN=6;BaseQRankSum=2.003;DP=60;Dels=0.00;FS=2.993;HaplotypeScore=4.1433;MLEAC=2;MLEAF=0.333;MQ=21.83;MQ0=0;MQRankSum=0.200;QD=2.20;ReadPosRankSum=1.402;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,6:17:20:94,0,20 0/1:16,2:19:23:23,0,39 0/0:19,1:21:6:0,6,61 ./. +chr3 37360698 . T A 47.44 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.765;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=9.9062;MLEAC=1;MLEAF=0.125;MQ=33.66;MQ0=0;MQRankSum=-2.355;QD=1.22;ReadPosRankSum=1.713;SB=-1.864e+00 GT:AD:DP:GQ:PL 0/0:10,1:11:24:0,24,331 0/1:12,1:13:1:1,0,252 0/1:20,5:25:82:82,0,385 0/0:7,0:8:12:0,12,140 +chr3 37670954 . C T 35.65 . AC=1;AF=0.167;AN=6;BaseQRankSum=-0.554;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=7.1960;MLEAC=1;MLEAF=0.167;MQ=17.26;MQ0=0;MQRankSum=1.137;QD=1.98;ReadPosRankSum=-0.437;SB=16.89 GT:AD:DP:GQ:PL 0/0:7,1:9:6:0,6,46 0/1:13,4:17:40:69,0,40 0/0:10,1:11:3:0,3,22 ./. +chr3 37789807 . A C 56.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.246;DP=70;Dels=0.00;FS=14.139;HaplotypeScore=0.7672;MLEAC=3;MLEAF=0.375;MQ=20.12;MQ0=0;MQRankSum=2.699;QD=1.54;ReadPosRankSum=-0.739;SB=0.355 GT:AD:DP:GQ:PL 0/0:12,0:13:6:0,6,63 0/1:25,2:27:41:41,0,79 0/0:20,0:20:12:0,12,134 1/1:8,2:10:6:60,6,0 +chr3 38053228 . A G,T 30.37 . AC=1,2;AF=0.125,0.250;AN=8;BaseQRankSum=-3.058;DP=75;Dels=0.04;FS=0.000;HaplotypeScore=9.2779;MLEAC=1,2;MLEAF=0.125,0.250;MQ=29.03;MQ0=0;MQRankSum=-2.967;QD=0.52;ReadPosRankSum=-0.216;SB=-3.612e-01 GT:AD:DP:GQ:PL 0/1:16,3,0:19:42:42,0,317,72,326,397 0/0:16,0,1:17:6:0,27,352,6,331,328 0/2:17,0,3:20:38:38,68,411,0,343,334 0/2:13,0,3:16:25:25,46,276,0,230,224 +chr3 38156014 . GC G 153.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.762;DP=46;FS=0.000;HaplotypeScore=18.8715;MLEAC=3;MLEAF=0.375;MQ=22.85;MQ0=0;MQRankSum=-1.339;QD=4.28;ReadPosRankSum=0.070;SB=-1.150e-02 GT:AD:DP:GQ:PL 0/1:7,5:5:22:67,0,22 0/1:11,3:5:25:25,0,84 0/0:10,0:6:16:0,16,180 0/1:5,4:8:99:114,0,145 +chr3 38162078 . A T 91.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.973;DP=103;Dels=0.00;FS=12.708;HaplotypeScore=1.9044;MLEAC=3;MLEAF=0.375;MQ=14.74;MQ0=0;MQRankSum=2.979;QD=1.87;ReadPosRankSum=0.724;SB=3.17 GT:AD:DP:GQ:PL 0/1:28,3:31:71:71,0,96 0/0:22,0:22:12:0,12,127 0/0:31,1:32:9:0,9,82 1/1:14,4:18:6:65,6,0 +chr3 38163579 . A C 215.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.866;DP=63;Dels=0.00;FS=40.620;HaplotypeScore=2.2002;MLEAC=4;MLEAF=0.500;MQ=28.66;MQ0=0;MQRankSum=-1.017;QD=3.43;ReadPosRankSum=-0.879;SB=-2.322e+00 GT:AD:DP:GQ:PL 0/1:11,1:12:11:11,0,229 0/1:13,4:17:31:31,0,127 0/1:14,6:20:99:140,0,297 0/1:10,4:14:76:76,0,239 +chr3 38180289 . T G 197.27 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.786;DP=63;Dels=0.02;FS=13.829;HaplotypeScore=17.0603;MLEAC=4;MLEAF=0.500;MQ=24.99;MQ0=0;MQRankSum=0.650;QD=3.13;ReadPosRankSum=0.949;SB=-5.024e-01 GT:AD:DP:GQ:PL 0/1:9,6:15:99:152,0,159 0/1:20,1:21:7:7,0,200 0/1:16,3:20:57:57,0,196 0/1:5,1:6:23:23,0,42 +chr3 38287502 . C G 144.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.741;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=5.1273;MLEAC=4;MLEAF=0.500;MQ=33.97;MQ0=0;MQRankSum=-2.626;QD=1.81;ReadPosRankSum=0.013;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:28:28,0,180 0/1:17,2:19:19:19,0,237 0/1:17,3:21:63:63,0,188 0/1:21,4:25:77:77,0,301 +chr3 38292864 . A C 931.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.061;DP=349;Dels=0.00;FS=47.138;HaplotypeScore=28.5734;MLEAC=4;MLEAF=0.500;MQ=29.98;MQ0=0;MQRankSum=-1.299;QD=2.67;ReadPosRankSum=5.813;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:68,8:76:99:139,0,915 0/1:84,16:100:99:240,0,1204 0/1:77,15:93:99:305,0,1110 0/1:65,15:80:99:290,0,511 +chr3 38316591 . G A 175.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.500;DP=275;Dels=0.00;FS=106.526;HaplotypeScore=5.5115;MLEAC=3;MLEAF=0.375;MQ=35.46;MQ0=0;MQRankSum=-4.297;QD=0.84;ReadPosRankSum=-1.703;SB=0.777 GT:AD:DP:GQ:PL 0/1:59,8:67:99:109,0,1700 0/0:60,5:65:32:0,32,1945 0/1:70,8:78:56:56,0,2174 0/1:58,7:65:54:54,0,1426 +chr3 38355509 rs696253 C T 151.31 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.985;DB;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=5.1318;MLEAC=5;MLEAF=0.833;MQ=19.69;MQ0=0;MQRankSum=-1.912;QD=4.88;ReadPosRankSum=-1.217;SB=26.67 GT:AD:DP:GQ:PL 0/1:10,2:12:5:5,0,221 1/1:2,4:6:9:73,9,0 0/1:7,5:13:5:112,0,5 ./. +chr3 38416011 . A G 104.27 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.936;DP=77;Dels=0.01;FS=2.409;HaplotypeScore=0.7296;MLEAC=4;MLEAF=0.500;MQ=32.44;MQ0=0;MQRankSum=-0.107;QD=1.35;ReadPosRankSum=1.978;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:16,1:17:2:2,0,276 0/1:20,1:21:3:3,0,350 0/1:17,3:21:53:53,0,285 0/1:13,4:17:85:85,0,245 +chr3 38521425 rs4407366 C T 165.26 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.093;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5127;MLEAC=6;MLEAF=0.750;MQ=27.88;MQ0=0;MQRankSum=1.093;QD=9.72;ReadPosRankSum=-0.555;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,1:4:17:17,0,99 1/1:1,2:3:6:83,6,0 1/1:2,2:4:6:74,6,0 0/1:5,1:6:35:35,0,36 +chr3 38598878 . A T 34.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.747;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5191;MLEAC=3;MLEAF=0.375;MQ=32.34;MQ0=0;MQRankSum=-3.264;QD=0.59;ReadPosRankSum=1.139;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,3:18:15:15,0,482 0/1:15,4:19:58:58,0,422 0/1:20,2:22:1:1,0,496 0/0:10,0:10:27:0,27,321 +chr3 38627167 rs191571672 C A 48.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.597;DB;DP=68;Dels=0.01;FS=2.449;HaplotypeScore=2.3645;MLEAC=1;MLEAF=0.125;MQ=32.18;MQ0=0;MQRankSum=-4.003;QD=2.40;ReadPosRankSum=2.320;SB=-1.120e-02 GT:AD:DP:GQ:PL 0/0:12,2:14:18:0,18,207 0/1:12,8:20:84:84,0,321 0/0:12,1:13:33:0,33,387 0/0:18,1:20:36:0,36,460 +chr3 38738717 rs6599240 G A 546.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.911;DB;DP=73;Dels=0.00;FS=2.518;HaplotypeScore=1.8498;MLEAC=3;MLEAF=0.375;MQ=37.98;MQ0=0;MQRankSum=-1.091;QD=10.13;ReadPosRankSum=-0.772;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,6:20:99:195,0,454 0/0:19,0:19:45:0,45,633 0/1:10,7:18:99:226,0,282 0/1:11,5:16:99:169,0,238 +chr3 38793989 rs7617919 G A 71.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.645;DB;DP=73;Dels=0.00;FS=2.273;HaplotypeScore=2.2093;MLEAC=1;MLEAF=0.125;MQ=34.96;MQ0=0;MQRankSum=-0.963;QD=4.80;ReadPosRankSum=0.023;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:10,5:15:99:108,0,323 0/0:20,0:20:51:0,51,650 0/0:22,0:22:60:0,60,765 0/0:16,0:16:42:0,42,521 +chr3 38935894 . G T 54.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.956;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4181;MLEAC=3;MLEAF=0.375;MQ=29.62;MQ0=0;MQRankSum=-2.808;QD=1.30;ReadPosRankSum=2.080;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:32:32,0,315 0/1:9,5:14:36:36,0,248 0/0:9,1:10:9:0,9,91 0/1:9,2:12:29:29,0,130 +chr3 39135592 . C G 177.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.302;DP=77;Dels=0.00;FS=2.484;HaplotypeScore=4.0001;MLEAC=3;MLEAF=0.375;MQ=31.45;MQ0=0;MQRankSum=-1.862;QD=3.06;ReadPosRankSum=2.174;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/0:17,1:19:4:0,4,366 0/1:19,3:22:30:30,0,205 0/1:19,3:22:58:58,0,257 0/1:9,5:14:99:131,0,164 +chr3 39149218 rs28362645 A T 94.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.940;DB;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.4979;MLEAC=3;MLEAF=0.375;MQ=37.23;MQ0=0;MQRankSum=0.403;QD=3.79;ReadPosRankSum=0.403;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:34:34,0,78 0/0:8,0:8:24:0,24,300 0/1:8,2:10:59:59,0,231 0/1:8,2:10:45:45,0,197 +chr3 39178080 . A G 190.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.631;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.6837;MLEAC=3;MLEAF=0.375;MQ=33.10;MQ0=0;MQRankSum=-3.179;QD=4.06;ReadPosRankSum=3.821;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,4:13:80:80,0,289 0/1:17,4:21:65:65,0,342 0/0:14,0:14:21:0,21,270 0/1:8,4:13:89:89,0,179 +chr3 39180099 rs784498 T C 531.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.007;DB;DP=203;Dels=0.00;FS=1.074;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.125;MQ=37.66;MQ0=0;MQRankSum=1.544;QD=15.65;ReadPosRankSum=1.152;SB=-2.130e+02 GT:AD:DP:GQ:PL 0/1:18,16:34:99:568,0,538 0/0:54,0:54:99:0,150,1879 0/0:65,0:65:99:0,190,2583 0/0:50,0:50:99:0,132,1680 +chr3 39226374 . T G 128.25 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.762;DP=71;Dels=0.03;FS=4.987;HaplotypeScore=7.4270;MLEAC=5;MLEAF=0.625;MQ=23.98;MQ0=0;MQRankSum=2.356;QD=1.81;ReadPosRankSum=-0.998;SB=13.05 GT:AD:DP:GQ:PL 1/1:13,1:14:3:35,3,0 0/1:17,2:19:46:46,0,77 0/1:21,1:22:29:29,0,50 1/1:11,2:14:6:61,6,0 +chr3 39227607 . A T 82.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.019;DP=151;Dels=0.00;FS=26.423;HaplotypeScore=4.1886;MLEAC=4;MLEAF=0.500;MQ=28.79;MQ0=0;MQRankSum=-1.400;QD=0.55;ReadPosRankSum=0.321;SB=-1.605e-01 GT:AD:DP:GQ:PL 0/1:38,5:43:14:14,0,637 0/1:30,3:33:39:39,0,477 0/1:37,4:41:46:46,0,568 0/1:30,4:34:26:26,0,359 +chr3 39229900 rs6805248 T C 4596.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.203;DB;DP=205;Dels=0.02;FS=14.267;HaplotypeScore=21.2792;MLEAC=8;MLEAF=1.00;MQ=29.45;MQ0=0;MQRankSum=3.553;QD=22.42;ReadPosRankSum=1.446;SB=-2.183e+03 GT:AD:DP:GQ:PL 1/1:7,41:48:99:1396,120,0 1/1:16,25:41:13:842,13,0 1/1:16,47:63:72:1468,72,0 1/1:20,29:49:36:890,36,0 +chr3 39449770 rs3772140 T G 130.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.610;DB;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.0836;MLEAC=1;MLEAF=0.125;MQ=30.49;MQ0=0;MQRankSum=-1.585;QD=9.30;ReadPosRankSum=2.194;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:51:0,51,562 0/1:6,8:14:99:166,0,114 0/0:15,0:15:36:0,36,459 0/0:5,0:5:9:0,9,104 +chr3 40464867 . A G 83.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.631;DP=95;Dels=0.03;FS=7.986;HaplotypeScore=5.3728;MLEAC=2;MLEAF=0.250;MQ=32.26;MQ0=0;MQRankSum=-4.402;QD=1.58;ReadPosRankSum=0.865;SB=0.627 GT:AD:DP:GQ:PL 0/1:20,2:22:11:11,0,392 0/1:21,8:30:99:113,0,532 0/0:24,2:26:17:0,17,426 0/0:14,0:14:27:0,27,323 +chr3 41291126 . T G 56.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.454;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.4833;MLEAC=4;MLEAF=0.500;MQ=24.81;MQ0=0;MQRankSum=0.124;QD=2.10;ReadPosRankSum=2.106;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:19:19,0,23 0/1:3,1:4:18:22,0,18 0/1:5,2:7:35:35,0,74 0/1:8,1:9:23:23,0,111 +chr3 41756986 rs61744385 A T 608.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.162;DB;DP=148;Dels=0.00;FS=4.098;HaplotypeScore=1.2392;MLEAC=3;MLEAF=0.375;MQ=37.42;MQ0=0;MQRankSum=-3.533;QD=6.15;ReadPosRankSum=2.471;SB=-3.170e+02 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,132,1772 0/1:28,7:35:99:161,0,843 0/1:34,11:45:99:281,0,1085 0/1:10,8:19:99:210,0,262 +chr3 41978806 . A C 36.98 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.966;DP=35;Dels=0.03;FS=22.424;HaplotypeScore=1.9150;MLEAC=4;MLEAF=0.500;MQ=35.48;MQ0=0;MQRankSum=-1.841;QD=1.06;ReadPosRankSum=-0.281;SB=-2.337e+00 GT:AD:DP:GQ:PL 0/1:11,1:12:1:1,0,296 0/1:8,1:9:17:17,0,137 0/1:9,2:11:42:42,0,176 0/1:1,1:2:17:17,0,38 +chr3 42139542 rs9851708 T C 54.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.406;DB;DP=25;Dels=0.00;FS=2.318;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=9.90;MQ0=0;MQRankSum=1.537;QD=6.78;ReadPosRankSum=0.406;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,2:5:6:51,6,0 ./. ./. 1/1:2,1:3:3:37,3,0 +chr3 42360275 rs579380 G A 50.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.40;MQ0=0;MQRankSum=0.736;QD=16.92;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,2:3:6:82,6,0 ./. +chr3 42633116 . C A 53.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.700;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=6.5321;MLEAC=3;MLEAF=0.375;MQ=25.97;MQ0=0;MQRankSum=0.196;QD=1.73;ReadPosRankSum=-0.308;SB=0.098 GT:AD:DP:GQ:PL 1/1:7,1:8:3:29,3,0 0/0:10,1:11:12:0,12,132 0/1:10,3:14:58:58,0,101 0/1:8,1:9:10:10,0,97 +chr3 42701229 . G A 37.10 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.691;DP=77;Dels=0.00;FS=43.425;HaplotypeScore=11.6696;MLEAC=2;MLEAF=0.250;MQ=32.43;MQ0=0;MQRankSum=-4.248;QD=1.06;ReadPosRankSum=-0.433;SB=-2.978e+01 GT:AD:DP:GQ:PL 0/1:12,3:15:2:2,0,264 0/0:21,2:23:15:0,15,449 0/0:18,1:19:6:0,6,331 0/1:15,5:20:71:71,0,279 +chr3 42739732 . C T 116.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.573;DP=176;Dels=0.01;FS=173.539;HaplotypeScore=13.8929;MLEAC=3;MLEAF=0.375;MQ=36.07;MQ0=0;MQRankSum=-4.504;QD=0.80;ReadPosRankSum=0.344;SB=-5.123e+00 GT:AD:DP:GQ:PL 0/0:27,4:31:22:0,22,905 0/1:42,5:49:64:64,0,1162 0/1:56,6:62:3:3,0,1628 0/1:25,7:32:90:90,0,705 +chr3 42793488 . G T 35.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.466;DP=106;Dels=0.03;FS=12.638;HaplotypeScore=11.7307;MLEAC=1;MLEAF=0.125;MQ=26.12;MQ0=0;MQRankSum=1.052;QD=1.59;ReadPosRankSum=-0.983;SB=9.38 GT:AD:DP:GQ:PL 0/1:18,3:21:71:71,0,161 0/0:29,0:30:33:0,33,339 0/0:28,0:28:42:0,42,471 0/0:23,0:24:12:0,12,117 +chr3 42956273 rs1427801 T C 2861.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.600;DB;DP=135;Dels=0.00;FS=3.313;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=23.89;MQ0=0;MQRankSum=1.879;QD=21.20;ReadPosRankSum=3.417;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:3,35:38:87:879,87,0 1/1:3,37:40:62:813,62,0 1/1:3,34:38:84:821,84,0 1/1:2,17:19:39:388,39,0 +chr3 42983630 . A C 341.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.211;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7288;MLEAC=4;MLEAF=0.500;MQ=30.33;MQ0=0;MQRankSum=-0.533;QD=4.88;ReadPosRankSum=-0.223;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:78:78,0,106 0/1:15,3:18:62:62,0,239 0/1:14,5:19:99:127,0,184 0/1:14,5:19:99:117,0,176 +chr3 43297504 rs6766825 A G 32.26 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.369;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.2221;MLEAC=4;MLEAF=0.667;MQ=14.54;MQ0=0;MQRankSum=1.734;QD=4.61;ReadPosRankSum=-1.734;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/0:8,0:8:3:0,3,32 1/1:3,1:4:3:35,3,0 1/1:2,1:3:3:35,3,0 +chr3 43591142 rs12638282 G A 1747.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.519;DB;DP=109;Dels=0.01;FS=3.046;HaplotypeScore=0.7415;MLEAC=5;MLEAF=0.625;MQ=38.25;MQ0=0;MQRankSum=-2.215;QD=16.03;ReadPosRankSum=1.298;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,24:27:72:942,72,0 0/1:23,13:36:99:433,0,726 0/1:26,11:37:99:350,0,727 0/1:6,2:8:68:68,0,95 +chr3 43647299 . T A 65.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.218;DP=116;Dels=0.00;FS=31.468;HaplotypeScore=1.9457;MLEAC=3;MLEAF=0.375;MQ=31.04;MQ0=0;MQRankSum=-2.420;QD=1.48;ReadPosRankSum=1.304;SB=-3.496e+00 GT:AD:DP:GQ:PL 0/0:29,3:32:11:0,11,668 0/1:25,5:31:78:78,0,604 0/0:37,3:40:0:0,0,891 0/1:10,3:13:26:26,0,288 +chr3 44286514 . G A 79.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.879;DP=149;Dels=0.02;FS=114.252;HaplotypeScore=3.3377;MLEAC=3;MLEAF=0.375;MQ=32.24;MQ0=0;MQRankSum=-2.575;QD=0.79;ReadPosRankSum=1.958;SB=0.161 GT:AD:DP:GQ:PL 0/1:36,6:42:76:76,0,546 0/0:44,4:48:20:0,20,858 0/1:38,7:45:36:36,0,738 0/1:10,1:11:10:10,0,179 +chr3 44408864 rs11407119 G GT 2636.96 . AC=8;AF=1.00;AN=8;BaseQRankSum=-3.044;DB;DP=104;FS=0.000;HaplotypeScore=20.3680;MLEAC=8;MLEAF=1.00;MQ=27.69;MQ0=0;MQRankSum=0.009;QD=25.36;RPA=3,4;RU=T;ReadPosRankSum=2.285;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:16,9:22:24:479,24,0 1/1:22,15:34:45:932,45,0 1/1:11,21:31:75:1044,75,0 1/1:4,4:8:18:230,18,0 +chr3 44509710 rs2372689 T C 315.73 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.406;DB;DP=28;Dels=0.00;FS=7.005;HaplotypeScore=2.1976;MLEAC=6;MLEAF=0.750;MQ=25.52;MQ0=0;MQRankSum=1.506;QD=11.28;ReadPosRankSum=0.869;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:60:60,0,65 0/1:5,4:9:60:60,0,146 1/1:2,3:5:9:108,9,0 1/1:4,4:8:12:133,12,0 +chr3 44621082 . A C 47.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.900;DP=253;Dels=0.00;FS=12.467;HaplotypeScore=4.3181;MLEAC=2;MLEAF=0.250;MQ=18.06;MQ0=0;MQRankSum=3.200;QD=0.39;ReadPosRankSum=-2.014;SB=-1.335e+00 GT:AD:DP:GQ:PL 0/0:67,1:68:1:0,1,307 0/1:63,2:66:10:10,0,410 0/0:63,1:64:10:0,10,320 0/1:50,4:55:76:76,0,336 +chr3 44673552 . G C 507.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.692;DP=181;Dels=0.01;FS=4.964;HaplotypeScore=6.7611;MLEAC=4;MLEAF=0.500;MQ=31.50;MQ0=0;MQRankSum=-5.001;QD=2.80;ReadPosRankSum=4.699;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,11:40:99:215,0,316 0/1:34,10:45:99:214,0,540 0/1:48,5:55:70:70,0,685 0/1:34,5:39:51:51,0,420 +chr3 44853691 . T A 50.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.714;DP=64;Dels=0.02;FS=73.300;HaplotypeScore=3.7424;MLEAC=2;MLEAF=0.250;MQ=30.65;MQ0=0;MQRankSum=-4.215;QD=1.59;ReadPosRankSum=2.814;SB=-3.083e+00 GT:AD:DP:GQ:PL 0/1:10,2:12:30:30,0,163 0/0:20,3:23:13:0,13,486 0/1:12,6:19:62:62,0,282 0/0:8,1:9:15:0,15,171 +chr3 44854563 rs3762636 A G 1241.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.910;DB;DP=82;Dels=0.00;FS=9.372;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=33.67;MQ0=0;MQRankSum=-4.768;QD=21.41;ReadPosRankSum=0.274;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:72:0,72,936 1/1:2,26:28:78:874,78,0 0/1:13,7:20:99:195,0,354 0/1:3,7:10:72:221,0,72 +chr3 44959450 . T G 78.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.132;DP=229;Dels=0.00;FS=6.615;HaplotypeScore=2.7595;MLEAC=2;MLEAF=0.250;MQ=38.34;MQ0=0;MQRankSum=-0.161;QD=0.70;ReadPosRankSum=-1.108;SB=0.782 GT:AD:DP:GQ:PL 0/1:53,3:56:15:15,0,1030 0/0:60,2:62:55:0,55,1557 0/0:54,2:56:27:0,27,1121 0/1:50,5:55:99:104,0,879 +chr3 45589032 . G T 483.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.206;DP=139;Dels=0.00;FS=2.332;HaplotypeScore=0.6859;MLEAC=4;MLEAF=0.500;MQ=35.48;MQ0=0;MQRankSum=-2.280;QD=3.48;ReadPosRankSum=-2.930;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,9:38:99:225,0,549 0/1:27,6:33:99:170,0,477 0/1:33,3:36:11:11,0,648 0/1:26,6:32:99:120,0,377 +chr3 45637440 rs145508440 C G 63.88 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.575;DB;DP=97;Dels=0.02;FS=10.110;HaplotypeScore=14.8979;MLEAC=2;MLEAF=0.250;MQ=28.91;MQ0=0;MQRankSum=-1.319;QD=1.36;ReadPosRankSum=1.905;SB=-5.923e-01 GT:AD:DP:GQ:PL 0/0:23,0:23:21:0,21,247 0/1:14,2:16:24:24,0,125 0/1:27,4:31:80:80,0,407 0/0:22,2:25:3:0,3,282 +chr3 45677677 . G C 43.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.281;DP=282;Dels=0.00;FS=83.537;HaplotypeScore=11.5855;MLEAC=2;MLEAF=0.250;MQ=30.64;MQ0=0;MQRankSum=-0.202;QD=0.31;ReadPosRankSum=-2.272;SB=-1.271e+00 GT:AD:DP:GQ:PL 0/1:65,8:73:48:48,0,1541 0/1:59,8:67:37:37,0,1185 0/0:82,2:84:99:0,124,2082 0/0:56,2:58:54:0,54,1132 +chr3 45773732 rs11709306 G A 1048.81 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.253;DB;DP=46;Dels=0.00;FS=14.640;HaplotypeScore=0.8740;MLEAC=7;MLEAF=0.875;MQ=35.56;MQ0=0;MQRankSum=1.139;QD=22.80;ReadPosRankSum=1.956;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,8:9:24:302,24,0 0/1:13,8:21:99:258,0,384 1/1:3,12:15:36:489,36,0 1/1:0,1:1:3:43,3,0 +chr3 45784963 rs9821974 T C 1445.59 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.204;DB;DP=72;Dels=0.01;FS=21.338;HaplotypeScore=10.4512;MLEAC=7;MLEAF=0.875;MQ=31.51;MQ0=0;MQRankSum=-1.248;QD=20.08;ReadPosRankSum=1.195;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:33:390,33,0 0/1:18,9:27:99:238,0,505 1/1:2,18:20:54:633,54,0 1/1:4,7:11:18:229,18,0 +chr3 45988708 . G T 41.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.683;DP=130;Dels=0.01;FS=31.252;HaplotypeScore=5.5752;MLEAC=2;MLEAF=0.250;MQ=36.20;MQ0=0;MQRankSum=-3.869;QD=0.66;ReadPosRankSum=-1.617;SB=-8.568e-01 GT:AD:DP:GQ:PL 0/0:34,1:35:56:0,56,1036 0/0:29,3:32:11:0,11,897 0/1:25,5:30:52:52,0,816 0/1:27,5:32:31:31,0,738 +chr3 46352355 rs4513489 T G 39.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=8;Dels=0.00;FS=3.979;HaplotypeScore=1.9952;MLEAC=2;MLEAF=1.00;MQ=17.47;MQ0=0;MQRankSum=0.736;QD=13.26;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:71,6,0 ./. ./. ./. +chr3 46399798 rs1799865 T C 1209.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.775;DB;DP=382;Dels=0.00;FS=60.877;HaplotypeScore=0.4900;MLEAC=4;MLEAF=0.500;MQ=24.66;MQ0=0;MQRankSum=-3.711;QD=3.17;ReadPosRankSum=2.246;SB=-2.360e+02 GT:AD:DP:GQ:PL 0/1:69,31:100:99:229,0,1250 0/1:63,33:96:99:405,0,992 0/1:74,29:103:99:343,0,683 0/1:65,17:82:99:275,0,709 +chr3 46484964 rs1042073 G A 1108.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.135;DB;DP=339;Dels=0.00;FS=2.267;HaplotypeScore=3.2257;MLEAC=1;MLEAF=0.125;MQ=43.27;MQ0=0;MQRankSum=-4.811;QD=13.05;ReadPosRankSum=1.015;SB=-5.640e+02 GT:AD:DP:GQ:PL 0/1:50,35:85:99:1145,0,1688 0/0:87,0:87:99:0,250,3492 0/0:93,0:93:99:0,277,3820 0/0:74,0:74:99:0,217,2948 +chr3 46713320 . G C 36.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.361;DP=21;Dels=0.05;FS=2.869;HaplotypeScore=1.9614;MLEAC=3;MLEAF=0.375;MQ=20.33;MQ0=0;MQRankSum=1.949;QD=2.40;ReadPosRankSum=-0.794;SB=-7.373e-01 GT:AD:DP:GQ:PL 0/1:1,1:3:29:29,0,33 0/1:7,1:8:16:31,0,16 0/1:3,1:4:17:17,0,17 0/0:5,0:5:3:0,3,27 +chr3 46721985 . G T 45.40 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.412;DP=106;Dels=0.00;FS=17.944;HaplotypeScore=13.4973;MLEAC=2;MLEAF=0.250;MQ=29.04;MQ0=0;MQRankSum=-3.317;QD=0.93;ReadPosRankSum=-0.031;SB=-3.557e+00 GT:AD:DP:GQ:PL 0/0:19,3:22:1:0,1,306 0/1:19,5:24:49:49,0,324 0/0:35,0:35:78:0,78,918 0/1:20,4:25:36:36,0,325 +chr3 46750532 . G T 60.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=2.113;DP=29;Dels=0.00;FS=18.325;HaplotypeScore=5.8230;MLEAC=4;MLEAF=1.00;MQ=17.10;MQ0=0;MQRankSum=1.268;QD=3.17;ReadPosRankSum=0.930;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,6:8:6:62,6,0 ./. 1/1:7,4:11:3:32,3,0 ./. +chr3 46944368 rs35418672 T C 1016.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.167;DB;DP=185;Dels=0.01;FS=18.016;HaplotypeScore=6.4091;MLEAC=3;MLEAF=0.375;MQ=33.11;MQ0=0;MQRankSum=-3.570;QD=7.01;ReadPosRankSum=1.593;SB=-4.880e+02 GT:AD:DP:GQ:PL 0/0:40,0:40:93:0,93,1144 0/1:30,19:49:99:543,0,805 0/1:41,16:58:99:417,0,1047 0/1:28,6:36:99:100,0,676 +chr3 47037256 . A C 217.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.863;DP=148;Dels=0.01;FS=19.226;HaplotypeScore=7.4707;MLEAC=3;MLEAF=0.375;MQ=28.47;MQ0=0;MQRankSum=-5.048;QD=2.00;ReadPosRankSum=0.930;SB=1.95 GT:AD:DP:GQ:PL 0/1:29,6:35:96:96,0,580 0/0:32,5:37:18:0,18,606 0/1:29,8:38:99:100,0,712 0/1:29,7:36:65:65,0,500 +chr3 47049648 . A C 201.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.016;DP=149;Dels=0.01;FS=60.326;HaplotypeScore=3.3853;MLEAC=4;MLEAF=0.500;MQ=34.33;MQ0=0;MQRankSum=-3.461;QD=1.35;ReadPosRankSum=-0.833;SB=-1.906e-02 GT:AD:DP:GQ:PL 0/1:36,5:41:30:30,0,843 0/1:29,4:33:30:30,0,736 0/1:37,6:43:70:70,0,941 0/1:25,6:31:99:114,0,523 +chr3 47276968 rs2276854 C T 2215.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.239;DB;DP=150;Dels=0.00;FS=3.033;HaplotypeScore=1.3513;MLEAC=4;MLEAF=0.500;MQ=33.02;MQ0=0;MQRankSum=-0.990;QD=19.78;ReadPosRankSum=1.577;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,108,1331 1/1:1,35:36:99:1246,105,0 0/1:22,25:47:99:755,0,556 0/1:18,11:29:99:263,0,464 +chr3 47276986 . A C 83.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.552;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=3.8244;MLEAC=2;MLEAF=0.250;MQ=36.13;MQ0=0;MQRankSum=-3.334;QD=0.90;ReadPosRankSum=0.328;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:39,6:45:73:73,0,936 0/0:55,0:55:99:0,114,1437 0/0:64,3:67:60:0,60,1685 0/1:42,5:47:52:52,0,993 +chr3 47384925 rs295457 G T 1066.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.121;DB;DP=43;Dels=0.02;FS=50.664;HaplotypeScore=1.7897;MLEAC=8;MLEAF=1.00;MQ=29.50;MQ0=0;MQRankSum=4.295;QD=24.79;ReadPosRankSum=0.643;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,10:11:27:319,27,0 1/1:6,7:13:21:270,21,0 1/1:1,7:8:21:271,21,0 1/1:3,7:10:21:245,21,0 +chr3 47453373 . T C 268.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.590;DP=95;Dels=0.00;FS=71.309;HaplotypeScore=5.3777;MLEAC=3;MLEAF=0.375;MQ=33.13;MQ0=0;MQRankSum=-4.522;QD=3.67;ReadPosRankSum=0.805;SB=0.396 GT:AD:DP:GQ:PL 0/1:16,7:23:99:138,0,419 0/0:20,2:22:11:0,11,546 0/1:20,6:26:89:89,0,365 0/1:18,6:24:84:84,0,407 +chr3 47453424 . T G 78.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.945;DP=86;Dels=0.00;FS=33.011;HaplotypeScore=7.9786;MLEAC=2;MLEAF=0.250;MQ=33.75;MQ0=0;MQRankSum=-2.930;QD=1.54;ReadPosRankSum=0.793;SB=0.526 GT:AD:DP:GQ:PL 0/0:16,0:16:36:0,36,453 0/1:17,4:21:65:65,0,420 0/0:19,0:19:36:0,36,445 0/1:25,4:30:55:55,0,657 +chr3 47454208 . C G 109.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.478;DP=156;Dels=0.01;FS=77.990;HaplotypeScore=3.2982;MLEAC=2;MLEAF=0.250;MQ=25.53;MQ0=0;MQRankSum=-1.031;QD=1.41;ReadPosRankSum=2.114;SB=-2.064e+00 GT:AD:DP:GQ:PL 0/1:33,6:39:58:58,0,561 0/0:36,3:39:4:0,4,558 0/1:32,6:38:92:92,0,715 0/0:35,4:39:17:0,17,651 +chr3 47680123 . G A 31 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.628;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=9.5976;MLEAC=3;MLEAF=0.375;MQ=22.11;MQ0=0;MQRankSum=0.021;QD=0.91;ReadPosRankSum=-0.639;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:30:0,30,312 0/1:11,2:13:22:22,0,78 0/1:9,3:13:36:36,0,132 0/1:6,1:7:16:16,0,80 +chr3 47888005 . T C 54.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.149;DP=133;Dels=0.01;FS=13.269;HaplotypeScore=9.1158;MLEAC=1;MLEAF=0.125;MQ=33.64;MQ0=0;MQRankSum=-2.090;QD=1.90;ReadPosRankSum=-1.447;SB=0.084 GT:AD:DP:GQ:PL 0/0:29,2:31:29:0,29,708 0/0:34,0:35:72:0,72,841 0/0:37,0:37:90:0,90,1037 0/1:24,5:29:91:91,0,393 +chr3 47896500 . C T 85.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.382;DP=67;Dels=0.01;FS=5.428;HaplotypeScore=2.6290;MLEAC=2;MLEAF=0.250;MQ=30.87;MQ0=0;MQRankSum=0.875;QD=2.32;ReadPosRankSum=0.165;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,2:17:4:0,4,308 0/0:12,0:12:15:0,15,166 0/1:19,3:22:57:57,0,375 0/1:12,3:15:69:69,0,191 +chr3 47963204 . A T 169.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.021;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.6168;MLEAC=3;MLEAF=0.500;MQ=22.60;MQ0=0;MQRankSum=0.599;QD=4.98;ReadPosRankSum=2.500;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,4:9:42:99,0,42 0/1:10,3:13:37:65,0,37 0/1:8,4:12:44:44,0,51 ./. +chr3 48465085 . A G 143.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.571;DP=69;Dels=0.00;FS=2.636;HaplotypeScore=3.3808;MLEAC=2;MLEAF=0.250;MQ=31.26;MQ0=0;MQRankSum=-4.866;QD=4.11;ReadPosRankSum=0.126;SB=0.474 GT:AD:DP:GQ:PL 0/1:13,4:17:81:81,0,306 0/0:15,3:18:1:0,1,268 0/1:10,8:18:99:102,0,200 0/0:13,3:16:8:0,8,339 +chr3 48605952 . C T 243.20 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.930;DP=27;Dels=0.00;FS=14.150;HaplotypeScore=5.5932;MLEAC=6;MLEAF=0.750;MQ=21.94;MQ0=0;MQRankSum=0.761;QD=9.01;ReadPosRankSum=-0.085;SB=6.92 GT:AD:DP:GQ:PL 1/1:4,3:7:9:92,9,0 1/1:4,3:8:9:88,9,0 0/1:3,1:4:17:17,0,17 0/1:4,3:8:31:91,0,31 +chr3 48622487 . A C 33.37 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.725;DP=72;Dels=0.01;FS=32.380;HaplotypeScore=6.9107;MLEAC=2;MLEAF=0.250;MQ=22.71;MQ0=0;MQRankSum=0.479;QD=0.88;ReadPosRankSum=-0.917;SB=-5.266e+00 GT:AD:DP:GQ:PL 0/1:15,1:16:6:6,0,238 0/0:12,1:13:15:0,15,137 0/0:20,0:20:24:0,24,247 0/1:17,5:22:66:66,0,84 +chr3 48624918 . C G 30.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.179;DP=93;Dels=0.01;FS=79.277;HaplotypeScore=21.2008;MLEAC=3;MLEAF=0.375;MQ=26.43;MQ0=0;MQRankSum=-0.560;QD=0.42;ReadPosRankSum=0.676;SB=-4.195e+00 GT:AD:DP:GQ:PL 0/1:15,2:17:13:13,0,339 0/1:24,4:28:8:8,0,420 0/1:22,4:26:51:51,0,330 0/0:21,0:21:39:0,39,419 +chr3 48625814 . C G 64.65 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.034;DP=32;Dels=0.03;FS=12.913;HaplotypeScore=7.4278;MLEAC=5;MLEAF=0.625;MQ=22.34;MQ0=0;MQRankSum=-0.307;QD=2.02;ReadPosRankSum=2.013;SB=0.656 GT:AD:DP:GQ:PL 1/1:4,1:5:3:31,3,0 0/1:6,1:7:25:25,0,29 0/1:6,5:11:25:25,0,100 0/1:7,1:8:20:26,0,20 +chr3 48627133 . C A 82.41 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.960;DP=59;Dels=0.02;FS=34.820;HaplotypeScore=20.7542;MLEAC=5;MLEAF=0.625;MQ=21.70;MQ0=0;MQRankSum=2.283;QD=1.40;ReadPosRankSum=0.618;SB=23.12 GT:AD:DP:GQ:PL 1/1:7,1:8:3:22,3,0 0/1:18,2:20:50:50,0,82 0/1:17,1:18:16:16,0,132 1/1:10,1:12:3:36,3,0 +chr3 48694491 . A G 172.40 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.939;DP=26;Dels=0.04;FS=10.620;HaplotypeScore=3.1110;MLEAC=7;MLEAF=0.875;MQ=19.05;MQ0=0;MQRankSum=2.082;QD=6.63;ReadPosRankSum=2.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,3:5:9:72,9,0 1/1:3,3:6:6:49,6,0 0/1:7,2:9:46:46,0,51 1/1:3,2:5:6:48,6,0 +chr3 48699437 rs144379309 T G 135.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.246;DB;DP=178;Dels=0.02;FS=67.170;HaplotypeScore=7.6447;MLEAC=4;MLEAF=0.500;MQ=33.33;MQ0=0;MQRankSum=-3.912;QD=0.76;ReadPosRankSum=1.799;SB=-8.379e-01 GT:AD:DP:GQ:PL 0/1:37,5:42:38:38,0,1042 0/1:45,5:50:52:52,0,979 0/1:43,4:47:6:6,0,1130 0/1:29,7:36:81:81,0,712 +chr3 48716381 . A G 31.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.455;DP=165;Dels=0.00;FS=18.756;HaplotypeScore=1.8638;MLEAC=1;MLEAF=0.125;MQ=39.54;MQ0=0;MQRankSum=-1.058;QD=0.86;ReadPosRankSum=-0.301;SB=-4.560e+00 GT:AD:DP:GQ:PL 0/0:37,2:39:34:0,34,1139 0/0:40,1:41:63:0,63,1284 0/0:48,0:48:99:0,111,1411 0/1:33,4:37:68:68,0,726 +chr3 48719654 . C T 131.64 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.262;DP=47;Dels=0.00;FS=13.601;HaplotypeScore=16.0456;MLEAC=3;MLEAF=0.375;MQ=20.41;MQ0=0;MQRankSum=0.757;QD=3.76;ReadPosRankSum=-1.996;SB=-1.310e+01 GT:AD:DP:GQ:PL 0/1:7,5:12:64:78,0,64 0/1:7,3:11:30:82,0,30 0/1:10,1:12:14:14,0,56 0/0:11,1:12:9:0,9,79 +chr3 48789006 . G A 60.90 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.840;DP=74;Dels=0.00;FS=66.565;HaplotypeScore=4.2731;MLEAC=1;MLEAF=0.125;MQ=30.24;MQ0=0;MQRankSum=-2.178;QD=2.65;ReadPosRankSum=0.000;SB=-1.010e+01 GT:AD:DP:GQ:PL 0/0:15,2:17:10:0,10,399 0/0:19,2:21:9:0,9,405 0/1:17,6:23:96:96,0,297 0/0:12,1:13:3:0,3,262 +chr3 48820381 rs111499766 T A 179.44 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.285;DB;DP=43;Dels=0.00;FS=5.630;HaplotypeScore=11.6993;MLEAC=4;MLEAF=0.500;MQ=20.70;MQ0=0;MQRankSum=1.632;QD=5.13;ReadPosRankSum=-0.326;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,5:14:44:99,0,44 0/0:8,0:8:3:0,3,25 0/1:12,4:16:11:90,0,11 1/1:4,1:5:3:32,3,0 +chr3 48820382 . A T 105.11 . AC=4;AF=0.667;AN=6;BaseQRankSum=2.481;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=14.3605;MLEAC=4;MLEAF=0.667;MQ=19.76;MQ0=0;MQRankSum=-0.496;QD=2.84;ReadPosRankSum=1.647;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,4:13:52:52,0,107 1/1:3,5:8:6:78,6,0 0/1:10,5:15:15:15,0,85 ./. +chr3 49038918 . C A 72.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.528;DP=116;Dels=0.02;FS=53.631;HaplotypeScore=10.0654;MLEAC=3;MLEAF=0.375;MQ=29.78;MQ0=0;MQRankSum=-0.914;QD=0.77;ReadPosRankSum=0.282;SB=0.735 GT:AD:DP:GQ:PL 0/1:29,6:35:80:80,0,713 0/0:20,1:21:25:0,25,463 0/1:28,3:31:14:14,0,649 0/1:25,2:27:21:21,0,357 +chr3 49060084 . G A 307.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.404;DP=217;Dels=0.02;FS=4.432;HaplotypeScore=10.9891;MLEAC=3;MLEAF=0.375;MQ=32.85;MQ0=0;MQRankSum=-3.519;QD=1.92;ReadPosRankSum=0.838;SB=-1.660e-01 GT:AD:DP:GQ:PL 0/1:44,11:55:99:213,0,1134 0/0:53,2:55:85:0,85,1307 0/1:51,9:60:99:124,0,1275 0/1:38,4:42:13:13,0,785 +chr3 49095139 . T A 558.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.697;DP=123;Dels=0.02;FS=80.065;HaplotypeScore=10.9608;MLEAC=4;MLEAF=0.500;MQ=28.24;MQ0=0;MQRankSum=3.018;QD=4.54;ReadPosRankSum=0.246;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,6:29:99:153,0,296 0/1:22,6:28:99:138,0,370 0/1:24,9:33:99:191,0,358 0/1:26,5:31:99:119,0,344 +chr3 49149037 . C T 532.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.816;DP=67;Dels=0.00;FS=1.182;HaplotypeScore=6.0424;MLEAC=3;MLEAF=0.375;MQ=29.75;MQ0=0;MQRankSum=0.661;QD=9.87;ReadPosRankSum=0.427;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/0:13,0:13:36:0,36,436 0/1:9,8:18:72:196,0,72 0/1:14,6:20:99:178,0,260 0/1:7,9:16:88:202,0,88 +chr3 49151535 . A C 83.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.821;DP=162;Dels=0.00;FS=22.517;HaplotypeScore=1.2474;MLEAC=3;MLEAF=0.375;MQ=33.80;MQ0=0;MQRankSum=1.097;QD=0.69;ReadPosRankSum=-1.207;SB=0.160 GT:AD:DP:GQ:PL 0/1:32,3:35:72:72,0,359 0/0:39,1:40:45:0,45,788 0/1:41,3:44:31:31,0,825 0/1:39,3:43:24:24,0,870 +chr3 49161199 . G T 117.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.569;DP=76;Dels=0.00;FS=48.143;HaplotypeScore=8.9187;MLEAC=4;MLEAF=0.500;MQ=26.53;MQ0=0;MQRankSum=-1.846;QD=1.55;ReadPosRankSum=2.990;SB=-1.069e+00 GT:AD:DP:GQ:PL 0/1:17,2:19:13:13,0,127 0/1:13,3:16:5:5,0,129 0/1:16,6:22:92:92,0,335 0/1:16,3:19:49:49,0,225 +chr3 49294403 . G T 396.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.350;DP=253;Dels=0.00;FS=152.601;HaplotypeScore=17.2912;MLEAC=4;MLEAF=0.500;MQ=29.35;MQ0=0;MQRankSum=-2.157;QD=1.57;ReadPosRankSum=0.799;SB=-6.798e-01 GT:AD:DP:GQ:PL 0/1:58,9:67:72:72,0,1493 0/1:51,13:64:99:199,0,1064 0/1:59,12:71:99:160,0,1346 0/1:47,4:51:7:7,0,920 +chr3 49459078 . C G,T 47.57 . AC=1,1;AF=0.125,0.125;AN=8;BaseQRankSum=-0.257;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=8.9075;MLEAC=1,1;MLEAF=0.125,0.125;MQ=25.39;MQ0=0;MQRankSum=1.190;QD=1.25;ReadPosRankSum=2.124;SB=0.041 GT:AD:DP:GQ:PL 0/2:14,0,4:20:80:80,92,193,0,101,89 0/0:19,0,0:19:9:0,9,108,9,108,108 0/0:18,0,0:18:21:0,21,209,21,209,209 0/1:15,2,0:17:36:36,0,159,57,165,221 +chr3 49568095 rs2311801 G A 316.41 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.113;DB;DP=15;Dels=0.00;FS=14.150;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=30.53;MQ0=0;MQRankSum=2.451;QD=21.09;ReadPosRankSum=1.268;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:84,6,0 1/1:1,4:5:12:161,12,0 1/1:1,3:4:6:69,6,0 1/1:1,1:2:3:40,3,0 +chr3 49691657 . T G 309.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.361;DP=111;Dels=0.00;FS=28.582;HaplotypeScore=4.7971;MLEAC=4;MLEAF=0.500;MQ=32.64;MQ0=0;MQRankSum=-1.984;QD=2.79;ReadPosRankSum=0.976;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:22,5:27:81:81,0,488 0/1:27,6:33:99:99,0,513 0/1:23,3:26:58:58,0,431 0/1:19,6:25:99:114,0,543 +chr3 49699220 . A T 31.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.821;DP=87;Dels=0.01;FS=24.892;HaplotypeScore=7.6311;MLEAC=2;MLEAF=0.250;MQ=29.33;MQ0=0;MQRankSum=-1.326;QD=0.81;ReadPosRankSum=-0.063;SB=-5.562e+00 GT:AD:DP:GQ:PL 0/1:16,1:17:3:3,0,184 0/0:20,1:21:4:0,4,259 0/0:25,1:27:16:0,16,456 0/1:17,4:21:65:65,0,96 +chr3 49700668 . A C 183.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.500;DP=82;Dels=0.00;FS=21.261;HaplotypeScore=8.6413;MLEAC=3;MLEAF=0.375;MQ=30.61;MQ0=0;MQRankSum=-1.022;QD=3.17;ReadPosRankSum=0.754;SB=0.436 GT:AD:DP:GQ:PL 0/1:15,4:19:67:67,0,302 0/1:17,3:20:37:37,0,345 0/0:23,1:24:15:0,15,511 0/1:13,6:19:99:123,0,229 +chr3 49714926 . A G 467.20 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.270;DP=83;Dels=0.01;FS=9.545;HaplotypeScore=20.0831;MLEAC=5;MLEAF=0.625;MQ=22.23;MQ0=0;MQRankSum=0.173;QD=5.63;ReadPosRankSum=0.312;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,14:22:66:146,0,66 0/1:11,10:21:15:96,0,15 0/1:10,10:20:82:148,0,82 1/1:10,9:19:12:122,12,0 +chr3 49736172 rs11130216 C A 204.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.582;DB;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.2487;MLEAC=4;MLEAF=0.500;MQ=27.56;MQ0=0;MQRankSum=0.028;QD=7.06;ReadPosRankSum=-1.193;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:65:65,0,169 0/1:4,1:5:22:22,0,46 0/1:6,2:8:49:49,0,89 0/1:2,4:6:21:111,0,21 +chr3 49739019 . G T 120.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.018;DP=101;Dels=0.00;FS=4.607;HaplotypeScore=0.4825;MLEAC=4;MLEAF=0.500;MQ=29.48;MQ0=0;MQRankSum=0.545;QD=1.19;ReadPosRankSum=-1.721;SB=-8.305e-02 GT:AD:DP:GQ:PL 0/1:27,3:30:33:33,0,528 0/1:17,2:20:38:38,0,190 0/1:22,2:24:17:17,0,446 0/1:23,4:27:75:75,0,232 +chr3 49753489 . T C 142.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.930;DP=125;Dels=0.01;FS=9.533;HaplotypeScore=2.3700;MLEAC=2;MLEAF=0.250;MQ=33.82;MQ0=0;MQRankSum=1.007;QD=2.16;ReadPosRankSum=0.152;SB=-9.176e-03 GT:AD:DP:GQ:PL 0/0:28,0:28:54:0,54,624 0/1:28,6:34:99:138,0,520 0/1:28,3:31:46:46,0,512 0/0:30,1:31:48:0,48,847 +chr3 49755333 . C A 46.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.627;DP=40;Dels=0.05;FS=2.558;HaplotypeScore=5.4202;MLEAC=2;MLEAF=0.250;MQ=32.02;MQ0=0;MQRankSum=-0.855;QD=2.91;ReadPosRankSum=1.076;SB=0.025 GT:AD:DP:GQ:PL 0/0:12,0:12:27:0,27,325 0/1:9,3:12:65:65,0,144 0/0:12,0:12:30:0,30,368 0/1:1,1:2:22:23,0,22 +chr3 49758026 . C T 198.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.738;DP=75;Dels=0.03;FS=43.392;HaplotypeScore=15.3427;MLEAC=4;MLEAF=0.500;MQ=26.08;MQ0=0;MQRankSum=-1.778;QD=2.65;ReadPosRankSum=-0.905;SB=-1.998e+01 GT:AD:DP:GQ:PL 0/1:11,3:14:39:39,0,134 0/1:13,4:18:32:32,0,158 0/1:15,7:23:99:127,0,216 0/1:15,2:18:43:43,0,89 +chr3 49836522 . A T 165 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.158;DP=133;Dels=0.01;FS=37.175;HaplotypeScore=2.9633;MLEAC=3;MLEAF=0.375;MQ=31.37;MQ0=0;MQRankSum=1.008;QD=1.76;ReadPosRankSum=0.221;SB=0.581 GT:AD:DP:GQ:PL 0/1:24,5:29:99:124,0,433 0/1:24,4:28:55:55,0,453 0/0:36,3:39:14:0,14,733 0/1:32,4:36:29:29,0,551 +chr3 49845391 . C A 37.31 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.448;DP=55;Dels=0.00;FS=48.789;HaplotypeScore=1.2332;MLEAC=2;MLEAF=0.250;MQ=35.11;MQ0=0;MQRankSum=-2.642;QD=1.24;ReadPosRankSum=1.149;SB=0.722 GT:AD:DP:GQ:PL 0/1:14,3:17:56:56,0,408 0/0:13,0:13:30:0,30,401 0/0:11,1:12:6:0,6,363 0/1:11,2:13:22:22,0,324 +chr3 49881408 . C T 73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.275;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=1.8454;MLEAC=2;MLEAF=0.250;MQ=31.52;MQ0=0;MQRankSum=-1.134;QD=1.40;ReadPosRankSum=1.182;SB=0.924 GT:AD:DP:GQ:PL 0/1:16,3:19:55:55,0,278 0/1:28,4:32:57:57,0,330 0/0:27,1:28:4:0,4,410 0/0:13,0:13:3:0,3,37 +chr3 49927501 . A C 84.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.648;DP=48;Dels=0.02;FS=45.128;HaplotypeScore=1.7609;MLEAC=4;MLEAF=0.500;MQ=24.93;MQ0=0;MQRankSum=-0.618;QD=1.75;ReadPosRankSum=-0.206;SB=-2.400e+00 GT:AD:DP:GQ:PL 0/1:7,4:11:50:81,0,50 0/1:13,2:15:6:6,0,166 0/1:11,1:12:8:8,0,194 0/1:7,2:9:30:30,0,133 +chr3 49934567 . A G 30.09 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.749;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.4332;MLEAC=3;MLEAF=0.375;MQ=24.38;MQ0=0;MQRankSum=1.614;QD=1.16;ReadPosRankSum=-0.135;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:3:0,3,22 0/1:9,1:10:17:17,0,17 0/1:11,1:12:19:19,0,78 0/1:3,1:4:17:35,0,17 +chr3 50127877 . G C 77.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.195;DP=109;Dels=0.04;FS=37.883;HaplotypeScore=5.8512;MLEAC=3;MLEAF=0.375;MQ=33.31;MQ0=0;MQRankSum=-2.572;QD=1.14;ReadPosRankSum=-0.390;SB=0.147 GT:AD:DP:GQ:PL 0/1:22,2:24:39:39,0,343 0/1:24,5:29:71:71,0,565 0/0:37,2:39:21:0,21,1015 0/1:12,1:13:10:10,0,209 +chr3 50142445 . T G 59.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.718;DP=55;Dels=0.02;FS=2.508;HaplotypeScore=6.5471;MLEAC=3;MLEAF=0.375;MQ=20.11;MQ0=0;MQRankSum=1.654;QD=1.32;ReadPosRankSum=-0.593;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:13:13,0,113 0/1:20,1:21:15:15,0,108 0/1:12,3:15:11:72,0,11 0/0:10,0:10:3:0,3,25 +chr3 50153355 . A G 51.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.333;DP=111;Dels=0.00;FS=8.400;HaplotypeScore=9.5025;MLEAC=2;MLEAF=0.250;MQ=32.82;MQ0=0;MQRankSum=-3.080;QD=0.78;ReadPosRankSum=-0.376;SB=0.534 GT:AD:DP:GQ:PL 0/1:26,4:30:51:51,0,753 0/0:24,1:25:14:0,14,455 0/1:32,4:36:42:42,0,752 0/0:19,0:20:33:0,33,392 +chr3 50231057 . A C 43.45 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.116;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=7.5440;MLEAC=4;MLEAF=0.500;MQ=26.88;MQ0=0;MQRankSum=-1.214;QD=0.87;ReadPosRankSum=0.231;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:14:14,0,65 0/1:7,2:9:44:44,0,88 0/1:19,1:20:7:7,0,137 0/1:10,3:13:20:20,0,31 +chr3 50252143 . G C 97.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.688;DP=123;Dels=0.00;FS=53.638;HaplotypeScore=5.0789;MLEAC=4;MLEAF=0.500;MQ=21.22;MQ0=0;MQRankSum=2.627;QD=0.79;ReadPosRankSum=-1.576;SB=-1.714e+00 GT:AD:DP:GQ:PL 0/1:33,1:34:12:12,0,244 0/1:27,2:29:2:2,0,235 0/1:30,2:32:32:32,0,191 0/1:24,4:28:92:92,0,96 +chr3 50333232 . G T 66.65 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.077;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.7466;MLEAC=3;MLEAF=0.500;MQ=25.97;MQ0=0;MQRankSum=0.849;QD=5.13;ReadPosRankSum=0.849;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/0:6,0:6:6:0,6,50 0/1:6,2:8:32:32,0,43 1/1:3,2:5:6:75,6,0 +chr3 50380330 . T C 35.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.036;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9826;MLEAC=2;MLEAF=0.250;MQ=27.42;MQ0=0;MQRankSum=1.503;QD=2.38;ReadPosRankSum=-0.969;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:23:23,0,76 0/0:13,0:13:18:0,18,190 0/0:12,0:12:24:0,24,253 0/1:6,2:8:54:54,0,75 +chr3 50390812 . C T 42.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.064;DP=41;Dels=0.02;FS=8.870;HaplotypeScore=10.3618;MLEAC=2;MLEAF=0.250;MQ=20.40;MQ0=0;MQRankSum=-1.672;QD=1.64;ReadPosRankSum=1.884;SB=1.70 GT:AD:DP:GQ:PL 0/1:9,3:12:43:43,0,50 0/0:6,2:8:9:0,9,101 0/1:7,6:13:40:40,0,50 0/0:6,1:7:6:0,6,62 +chr3 50391214 . C G 251.54 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.385;DP=86;Dels=0.00;FS=15.895;HaplotypeScore=1.2911;MLEAC=2;MLEAF=0.250;MQ=36.43;MQ0=0;MQRankSum=-1.861;QD=6.14;ReadPosRankSum=2.599;SB=-1.555e-01 GT:AD:DP:GQ:PL 0/0:16,2:18:1:0,1,196 0/1:19,7:26:99:162,0,154 0/0:26,1:27:14:0,14,447 0/1:9,6:15:99:129,0,124 +chr3 50392728 . A T 118.99 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.836;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9371;MLEAC=2;MLEAF=0.250;MQ=25.64;MQ0=0;MQRankSum=2.281;QD=5.95;ReadPosRankSum=-1.242;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:9:0,9,86 0/1:10,5:15:35:135,0,35 0/0:15,0:15:18:0,18,180 0/1:4,1:5:25:25,0,35 +chr3 50677763 . G T 50.71 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.990;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.2604;MLEAC=1;MLEAF=0.125;MQ=35.57;MQ0=0;MQRankSum=-3.184;QD=1.54;ReadPosRankSum=-0.657;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,1:35:56:0,56,1025 0/0:34,2:36:2:0,2,605 0/0:45,2:47:67:0,67,1018 0/1:27,6:33:86:86,0,477 +chr3 50685338 . G C 83.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.535;DP=208;Dels=0.00;FS=24.716;HaplotypeScore=1.7332;MLEAC=2;MLEAF=0.250;MQ=31.44;MQ0=0;MQRankSum=-0.223;QD=0.77;ReadPosRankSum=1.004;SB=1.24 GT:AD:DP:GQ:PL 0/0:47,1:48:54:0,54,999 0/1:47,6:53:57:57,0,1158 0/1:49,6:55:68:68,0,912 0/0:50,2:52:39:0,39,997 +chr3 50685518 . A C 51.13 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.730;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.1251;MLEAC=2;MLEAF=0.250;MQ=31.46;MQ0=0;MQRankSum=-1.156;QD=1.19;ReadPosRankSum=-0.955;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,3:23:26:26,0,489 0/1:16,4:20:66:66,0,339 0/0:27,1:29:31:0,31,702 0/0:21,2:23:7:0,7,434 +chr3 51312765 . A T 69.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.362;DP=93;Dels=0.02;FS=0.000;HaplotypeScore=9.4926;MLEAC=2;MLEAF=0.250;MQ=22.06;MQ0=0;MQRankSum=2.404;QD=1.40;ReadPosRankSum=-2.624;SB=0.201 GT:AD:DP:GQ:PL 0/0:21,1:22:11:0,11,278 0/1:25,3:28:68:68,0,200 0/0:20,0:20:24:0,24,213 0/1:19,2:21:43:43,0,160 +chr3 51393937 . T G 37.59 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.228;DP=101;Dels=0.02;FS=4.734;HaplotypeScore=28.9189;MLEAC=3;MLEAF=0.375;MQ=16.73;MQ0=0;MQRankSum=1.396;QD=0.51;ReadPosRankSum=0.906;SB=-1.213e+00 GT:AD:DP:GQ:PL 0/1:19,3:22:24:24,0,143 0/1:22,1:23:1:1,0,164 0/1:22,5:27:50:50,0,97 0/0:23,2:27:1:0,1,161 +chr3 51412079 . C A 62.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.880;DP=180;Dels=0.00;FS=2.283;HaplotypeScore=8.0074;MLEAC=3;MLEAF=0.375;MQ=32.91;MQ0=0;MQRankSum=-4.337;QD=0.45;ReadPosRankSum=4.379;SB=-3.776e-02 GT:AD:DP:GQ:PL 0/1:47,4:52:41:41,0,919 0/0:37,2:39:20:0,20,752 0/1:48,4:52:21:21,0,910 0/1:32,5:37:44:44,0,563 +chr3 51671468 . T C 84.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.790;DP=136;Dels=0.01;FS=45.780;HaplotypeScore=7.8578;MLEAC=2;MLEAF=0.250;MQ=36.21;MQ0=0;MQRankSum=-1.242;QD=1.40;ReadPosRankSum=1.509;SB=-2.505e+00 GT:AD:DP:GQ:PL 0/1:20,4:24:70:70,0,561 0/0:31,2:33:2:0,2,774 0/0:41,2:43:27:0,27,1091 0/1:31,4:35:54:54,0,1006 +chr3 51741658 . C T 269.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.951;DP=92;Dels=0.01;FS=4.800;HaplotypeScore=5.2087;MLEAC=4;MLEAF=0.500;MQ=29.26;MQ0=0;MQRankSum=-1.081;QD=2.93;ReadPosRankSum=2.279;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:19,4:23:82:82,0,434 0/1:17,6:23:86:86,0,292 0/1:18,4:22:88:88,0,329 0/1:19,4:23:56:56,0,456 +chr3 51929183 rs11927897 C T 1605.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.127;DB;DP=161;Dels=0.00;FS=4.013;HaplotypeScore=2.3258;MLEAC=3;MLEAF=0.375;MQ=36.23;MQ0=0;MQRankSum=-4.252;QD=12.95;ReadPosRankSum=-0.185;SB=-7.770e+02 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,105,1387 0/1:16,17:33:99:500,0,475 0/1:22,26:48:99:800,0,655 0/1:28,15:43:99:349,0,814 +chr3 51969653 . G T 50.43 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.710;DP=89;Dels=0.00;FS=56.134;HaplotypeScore=6.6364;MLEAC=2;MLEAF=0.250;MQ=32.47;MQ0=0;MQRankSum=0.035;QD=1.15;ReadPosRankSum=-2.273;SB=-3.728e+00 GT:AD:DP:GQ:PL 0/0:20,0:20:42:0,42,517 0/1:15,4:20:79:79,0,320 0/0:24,1:25:23:0,23,665 0/1:21,2:24:12:12,0,486 +chr3 51994625 . A G 211.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.048;DP=79;Dels=0.04;FS=15.967;HaplotypeScore=6.4002;MLEAC=4;MLEAF=0.500;MQ=29.77;MQ0=0;MQRankSum=-2.131;QD=2.68;ReadPosRankSum=1.045;SB=-1.279e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:47:47,0,308 0/1:9,3:13:33:33,0,208 0/1:16,5:21:64:64,0,249 0/1:15,5:20:99:110,0,224 +chr3 52255617 . G C 44.94 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.453;DP=102;Dels=0.00;FS=27.798;HaplotypeScore=11.2327;MLEAC=2;MLEAF=0.250;MQ=29.23;MQ0=0;MQRankSum=-0.684;QD=0.88;ReadPosRankSum=-2.034;SB=-3.071e+00 GT:AD:DP:GQ:PL 0/0:20,1:21:1:0,1,353 0/1:26,2:28:14:14,0,414 0/0:28,2:30:16:0,16,452 0/1:19,3:23:70:70,0,214 +chr3 52301070 . C A 62.37 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.061;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=19.0736;MLEAC=2;MLEAF=0.333;MQ=23.88;MQ0=0;MQRankSum=-5.202;QD=0.75;ReadPosRankSum=3.412;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,7:39:53:53,0,174 0/1:35,7:43:48:48,0,300 0/0:28,4:33:16:0,16,311 ./. +chr3 52362121 . A T 37.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.805;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.9692;MLEAC=3;MLEAF=0.375;MQ=24.30;MQ0=0;MQRankSum=0.053;QD=0.84;ReadPosRankSum=1.735;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,1:19:2:2,0,224 0/0:16,0:16:15:0,15,148 0/1:12,3:15:49:49,0,190 0/1:8,2:11:20:27,0,20 +chr3 52386557 . T A 41.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.838;DP=80;Dels=0.00;FS=2.396;HaplotypeScore=6.3207;MLEAC=3;MLEAF=0.375;MQ=26.02;MQ0=0;MQRankSum=-1.611;QD=0.74;ReadPosRankSum=1.611;SB=-6.381e-01 GT:AD:DP:GQ:PL 0/1:16,3:19:44:44,0,287 0/1:20,1:21:4:4,0,181 0/0:22,1:23:17:0,17,364 0/1:13,4:17:35:35,0,106 +chr3 52395574 . T A 109.12 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.317;DP=35;Dels=0.03;FS=13.856;HaplotypeScore=4.8915;MLEAC=8;MLEAF=1.00;MQ=16.01;MQ0=0;MQRankSum=2.491;QD=3.12;ReadPosRankSum=3.650;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,4:9:3:24,3,0 1/1:7,3:10:6:47,6,0 1/1:5,3:8:6:47,6,0 1/1:6,1:7:3:28,3,0 +chr3 52402943 . A T 122.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.613;DP=120;Dels=0.02;FS=17.505;HaplotypeScore=10.6105;MLEAC=4;MLEAF=0.500;MQ=27.88;MQ0=0;MQRankSum=-3.341;QD=1.02;ReadPosRankSum=0.505;SB=-8.119e-01 GT:AD:DP:GQ:PL 0/1:26,4:30:31:31,0,474 0/1:22,3:25:47:47,0,343 0/1:31,3:34:6:6,0,490 0/1:24,5:29:80:80,0,334 +chr3 52406463 . G T 96.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.293;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=17.3108;MLEAC=4;MLEAF=0.500;MQ=24.94;MQ0=0;MQRankSum=-1.805;QD=1.24;ReadPosRankSum=2.244;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:22:22,0,320 0/1:12,4:16:40:40,0,96 0/1:14,3:17:52:52,0,111 0/1:19,3:22:25:25,0,170 +chr3 52422067 . G T 235.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.565;DP=44;Dels=0.00;FS=6.120;HaplotypeScore=6.5353;MLEAC=4;MLEAF=0.500;MQ=26.16;MQ0=0;MQRankSum=0.965;QD=5.35;ReadPosRankSum=2.022;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,2:7:34:55,0,34 0/1:7,5:12:62:62,0,112 0/1:8,3:11:66:66,0,124 0/1:9,4:14:23:95,0,23 +chr3 52425038 . C A 39.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.106;DP=73;Dels=0.00;FS=3.859;HaplotypeScore=3.0147;MLEAC=3;MLEAF=0.375;MQ=23.68;MQ0=0;MQRankSum=1.278;QD=0.67;ReadPosRankSum=0.889;SB=-5.762e-01 GT:AD:DP:GQ:PL 0/1:16,1:17:9:9,0,134 0/1:19,3:22:23:23,0,228 0/0:14,0:14:21:0,21,204 0/1:15,4:20:50:50,0,125 +chr3 52437475 . C A 37.49 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.919;DP=117;Dels=0.01;FS=68.192;HaplotypeScore=13.7383;MLEAC=2;MLEAF=0.250;MQ=32.42;MQ0=0;MQRankSum=-3.007;QD=0.66;ReadPosRankSum=0.958;SB=-2.668e+00 GT:AD:DP:GQ:PL 0/0:26,2:28:5:0,5,642 0/1:18,4:22:57:57,0,437 0/0:30,2:32:69:0,69,847 0/1:31,3:34:21:21,0,707 +chr3 52472189 . C G 64.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.163;DP=27;Dels=0.00;FS=6.021;HaplotypeScore=2.2240;MLEAC=3;MLEAF=0.375;MQ=30.52;MQ0=0;MQRankSum=-1.356;QD=3.40;ReadPosRankSum=2.332;SB=0.520 GT:AD:DP:GQ:PL 0/1:3,3:6:36:51,0,36 0/1:5,2:7:39:39,0,52 0/0:8,0:8:9:0,9,83 0/1:5,1:6:17:17,0,26 +chr3 52539050 . A T 83.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.760;DP=146;Dels=0.00;FS=129.117;HaplotypeScore=4.3612;MLEAC=3;MLEAF=0.375;MQ=32.23;MQ0=0;MQRankSum=-2.748;QD=0.77;ReadPosRankSum=3.270;SB=0.290 GT:AD:DP:GQ:PL 0/0:36,2:38:14:0,14,740 0/1:28,8:36:58:58,0,678 0/1:37,5:43:13:13,0,831 0/1:24,5:29:55:55,0,377 +chr3 52555859 . G A 100.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.720;DP=40;Dels=0.00;FS=7.732;HaplotypeScore=9.3039;MLEAC=3;MLEAF=0.375;MQ=19.42;MQ0=0;MQRankSum=-0.764;QD=2.70;ReadPosRankSum=-0.764;SB=-8.685e-01 GT:AD:DP:GQ:PL 0/0:2,1:3:6:0,6,67 0/1:6,4:10:14:68,0,14 0/1:11,5:16:26:53,0,26 0/1:7,4:11:21:21,0,68 +chr3 52651486 . C T 83.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.228;DP=168;Dels=0.00;FS=30.376;HaplotypeScore=1.7800;MLEAC=2;MLEAF=0.250;MQ=37.52;MQ0=0;MQRankSum=-3.284;QD=1.55;ReadPosRankSum=1.858;SB=-3.506e-02 GT:AD:DP:GQ:PL 0/1:36,5:41:49:49,0,1051 0/0:54,2:56:57:0,57,1503 0/0:55,3:58:66:0,66,1617 0/1:9,4:13:76:76,0,258 +chr3 52726695 rs6762813 C T 774.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.120;DB;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.2167;MLEAC=3;MLEAF=0.375;MQ=36.16;MQ0=0;MQRankSum=-3.543;QD=9.68;ReadPosRankSum=1.750;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:78:0,78,1011 0/1:23,10:33:99:267,0,768 0/1:23,16:39:99:469,0,675 0/1:5,3:8:82:82,0,106 +chr3 52842229 . T G 174.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.441;DP=171;Dels=0.01;FS=27.302;HaplotypeScore=8.8953;MLEAC=3;MLEAF=0.375;MQ=29.88;MQ0=0;MQRankSum=-3.064;QD=1.36;ReadPosRankSum=-0.879;SB=-1.569e+00 GT:AD:DP:GQ:PL 0/1:34,3:37:18:18,0,666 0/1:37,8:45:96:96,0,490 0/1:39,6:45:99:101,0,767 0/0:39,4:43:2:0,2,613 +chr3 52853341 . C T 108.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.721;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.4011;MLEAC=2;MLEAF=0.250;MQ=27.03;MQ0=0;MQRankSum=-0.062;QD=6.39;ReadPosRankSum=0.803;SB=-8.930e-03 GT:AD:DP:GQ:PL 0/1:5,4:9:94:112,0,94 0/0:16,0:16:30:0,30,341 0/0:10,0:10:21:0,21,234 0/1:6,2:8:38:38,0,54 +chr3 52860634 . T G 95.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.018;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5585;MLEAC=2;MLEAF=0.250;MQ=31.20;MQ0=0;MQRankSum=1.591;QD=2.08;ReadPosRankSum=-2.129;SB=0.890 GT:AD:DP:GQ:PL 0/0:28,0:28:51:0,51,581 0/1:20,4:24:81:81,0,458 0/0:21,1:22:9:0,9,362 0/1:19,3:22:56:56,0,398 +chr3 52867811 rs6776876 A T 140.18 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.652;DB;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=8.6239;MLEAC=7;MLEAF=0.875;MQ=16.47;MQ0=0;MQRankSum=0.307;QD=4.25;ReadPosRankSum=1.263;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,4:8:9:105,9,0 0/1:5,4:9:10:10,0,61 1/1:5,3:8:3:22,3,0 1/1:4,3:7:6:45,6,0 +chr3 52950202 . C A 73.31 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.984;DP=154;Dels=0.01;FS=29.940;HaplotypeScore=13.6593;MLEAC=2;MLEAF=0.250;MQ=29.46;MQ0=0;MQRankSum=-3.059;QD=0.91;ReadPosRankSum=-3.711;SB=0.118 GT:AD:DP:GQ:PL 0/1:30,6:36:80:80,0,663 0/0:40,3:43:6:0,6,564 0/1:39,4:43:34:34,0,770 0/0:28,2:30:16:0,16,375 +chr3 52962416 . C G 35.42 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.025;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.7171;MLEAC=3;MLEAF=0.375;MQ=27.92;MQ0=0;MQRankSum=-1.080;QD=1.31;ReadPosRankSum=0.176;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:6:6,0,201 0/1:7,1:8:16:16,0,49 0/0:13,0:13:24:0,24,254 0/1:4,3:7:25:55,0,25 +chr3 53212476 . A G 71.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.840;DP=68;Dels=0.01;FS=13.428;HaplotypeScore=3.1039;MLEAC=2;MLEAF=0.250;MQ=33.35;MQ0=0;MQRankSum=-1.371;QD=1.84;ReadPosRankSum=-1.793;SB=-1.820e+01 GT:AD:DP:GQ:PL 0/0:10,0:10:18:0,18,226 0/0:17,1:19:12:0,12,448 0/1:23,3:26:60:60,0,400 0/1:9,3:12:53:53,0,254 +chr3 53260710 rs2279321 G A 291.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.611;DB;DP=45;Dels=0.00;FS=1.616;HaplotypeScore=4.3688;MLEAC=3;MLEAF=0.375;MQ=31.12;MQ0=0;MQRankSum=-3.262;QD=7.89;ReadPosRankSum=1.534;SB=-5.095e+01 GT:AD:DP:GQ:PL 0/0:8,0:8:24:0,24,299 0/1:8,4:12:84:84,0,229 0/1:9,4:13:99:105,0,134 0/1:6,5:12:96:146,0,96 +chr3 53757414 . G C 133.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.311;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=4;MLEAF=0.500;MQ=29.29;MQ0=0;MQRankSum=-2.593;QD=1.41;ReadPosRankSum=2.298;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,2:24:11:11,0,526 0/1:18,5:23:55:55,0,345 0/1:22,4:26:62:62,0,420 0/1:18,3:21:48:48,0,322 +chr3 53820881 . A G 50.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.984;DP=189;Dels=0.00;FS=9.431;HaplotypeScore=1.7270;MLEAC=1;MLEAF=0.125;MQ=37.63;MQ0=0;MQRankSum=-2.090;QD=1.76;ReadPosRankSum=0.083;SB=-1.162e-02 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,108,1333 0/0:42,1:44:67:0,67,1211 0/0:68,3:71:88:0,88,1983 0/1:24,5:29:87:87,0,684 +chr3 54157710 rs2290132 A T 2286.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.319;DB;DP=92;Dels=0.00;FS=18.378;HaplotypeScore=4.7257;MLEAC=7;MLEAF=0.875;MQ=35.17;MQ0=0;MQRankSum=0.376;QD=24.85;ReadPosRankSum=1.489;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,11:30:99:311,0,564 1/1:4,20:24:60:764,60,0 1/1:4,15:19:45:583,45,0 1/1:0,19:19:54:673,54,0 +chr3 54419929 rs147656930 A C 101.35 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.521;DB;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=10.8476;MLEAC=3;MLEAF=0.500;MQ=23.62;MQ0=0;MQRankSum=0.652;QD=1.63;ReadPosRankSum=-2.391;SB=0.052 GT:AD:DP:GQ:PL 0/1:19,2:21:17:17,0,77 0/1:20,4:24:85:85,0,179 0/1:15,2:17:38:38,0,102 ./. +chr3 54921903 rs3773594 T C 284.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.919;DB;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.8914;MLEAC=1;MLEAF=0.125;MQ=33.56;MQ0=0;MQRankSum=0.433;QD=12.95;ReadPosRankSum=0.801;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,10:22:99:321,0,360 0/0:23,0:23:66:0,66,832 0/0:33,0:33:87:0,87,1021 0/0:21,0:21:60:0,60,717 +chr3 54930811 . T A 630.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.862;DP=257;Dels=0.00;FS=236.718;HaplotypeScore=17.9960;MLEAC=4;MLEAF=0.500;MQ=33.90;MQ0=0;MQRankSum=-7.615;QD=2.45;ReadPosRankSum=1.504;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:47,14:61:99:199,0,1347 0/1:49,8:57:99:101,0,1171 0/1:62,15:77:99:207,0,1616 0/1:49,13:62:99:166,0,1293 +chr3 55043613 rs3773570 G C 72.78 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.684;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=24.79;MQ0=0;MQRankSum=1.920;QD=14.56;ReadPosRankSum=-0.322;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:9:0,9,99 1/1:1,1:2:3:38,3,0 ./. 1/1:1,2:3:6:76,6,0 +chr3 55108151 . G T 103.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.424;DP=254;Dels=0.00;FS=20.766;HaplotypeScore=8.8250;MLEAC=2;MLEAF=0.250;MQ=32.40;MQ0=0;MQRankSum=-2.315;QD=0.99;ReadPosRankSum=1.309;SB=0.574 GT:AD:DP:GQ:PL 0/1:50,5:55:80:80,0,792 0/0:61,5:66:15:0,15,1069 0/0:79,4:83:71:0,71,1656 0/1:44,6:50:65:65,0,783 +chr3 55717889 . T G 143.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.221;DP=119;Dels=0.00;FS=17.316;HaplotypeScore=2.4224;MLEAC=3;MLEAF=0.375;MQ=34.28;MQ0=0;MQRankSum=-3.795;QD=1.84;ReadPosRankSum=1.313;SB=-1.185e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:54:54,0,456 0/1:31,4:35:57:57,0,562 0/0:41,0:41:78:0,78,985 0/1:17,6:23:76:76,0,316 +chr3 55768770 . A C 34.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.763;DP=222;Dels=0.00;FS=41.307;HaplotypeScore=1.9726;MLEAC=1;MLEAF=0.125;MQ=37.21;MQ0=0;MQRankSum=-0.109;QD=0.57;ReadPosRankSum=-0.982;SB=-9.169e-03 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,150,1987 0/1:54,7:61:71:71,0,1681 0/0:61,0:61:99:0,174,2260 0/0:48,0:48:99:0,135,1706 +chr3 56593543 rs12486047 C A 3845.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.372;DB;DP=112;Dels=0.02;FS=0.000;HaplotypeScore=3.4882;MLEAC=8;MLEAF=1.00;MQ=36.25;MQ0=0;MQRankSum=1.766;QD=34.33;ReadPosRankSum=2.442;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,27:32:81:1061,81,0 1/1:3,30:33:69:1161,69,0 1/1:2,34:36:78:1289,78,0 1/1:0,9:9:27:334,27,0 +chr3 56650012 rs4681904 G C 1103.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.534;DB;DP=139;Dels=0.00;FS=24.268;HaplotypeScore=0.4974;MLEAC=3;MLEAF=0.375;MQ=34.16;MQ0=0;MQRankSum=-1.072;QD=11.50;ReadPosRankSum=0.542;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,108,1331 0/1:27,21:48:99:646,0,720 0/1:22,14:36:99:342,0,604 0/1:7,5:12:99:159,0,149 +chr3 56807776 . C T 165.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.960;DP=172;Dels=0.01;FS=38.454;HaplotypeScore=2.1990;MLEAC=1;MLEAF=0.125;MQ=37.52;MQ0=0;MQRankSum=-1.205;QD=2.00;ReadPosRankSum=-2.008;SB=-2.950e+00 GT:AD:DP:GQ:PL 0/1:41,3:44:2:2,0,1230 0/0:39,2:41:40:0,40,1106 0/0:46,2:48:64:0,64,1412 0/1:30,8:38:99:200,0,764 +chr3 57131950 . T G 119.10 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.109;DP=162;Dels=0.00;FS=120.943;HaplotypeScore=2.9667;MLEAC=2;MLEAF=0.250;MQ=31.41;MQ0=0;MQRankSum=-1.304;QD=1.59;ReadPosRankSum=0.201;SB=-2.771e+00 GT:AD:DP:GQ:PL 0/0:46,3:49:7:0,7,1134 0/1:28,7:35:99:103,0,722 0/1:35,5:40:57:57,0,931 0/0:35,3:38:28:0,28,861 +chr3 57139972 rs1545981 A G 1991.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.473;DB;DP=143;Dels=0.03;FS=0.661;HaplotypeScore=9.2881;MLEAC=5;MLEAF=0.625;MQ=34.91;MQ0=0;MQRankSum=-2.289;QD=13.93;ReadPosRankSum=-0.634;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:4,29:33:87:1070,87,0 0/1:27,13:40:99:386,0,447 0/1:28,15:43:99:439,0,846 0/1:17,5:22:99:142,0,498 +chr3 57280047 . A T 132.18 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.589;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=2.3527;MLEAC=6;MLEAF=1.00;MQ=20.29;MQ0=0;MQRankSum=1.589;QD=10.17;ReadPosRankSum=0.572;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:12:108,12,0 1/1:4,1:5:3:28,3,0 1/1:2,1:3:3:32,3,0 ./. +chr3 57330338 . A T 171.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.056;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8252;MLEAC=3;MLEAF=0.375;MQ=32.52;MQ0=0;MQRankSum=-2.197;QD=2.29;ReadPosRankSum=3.181;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:51:51,0,368 0/1:27,5:32:93:93,0,554 0/1:17,4:21:71:71,0,324 0/0:27,0:27:42:0,42,490 +chr3 57343318 . T G 297.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.925;DP=166;Dels=0.00;FS=4.459;HaplotypeScore=3.1760;MLEAC=4;MLEAF=0.500;MQ=34.40;MQ0=0;MQRankSum=-4.734;QD=1.79;ReadPosRankSum=-2.733;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:43,10:53:99:159,0,784 0/1:42,7:49:67:67,0,958 0/1:44,8:52:66:66,0,1112 0/1:9,3:12:48:48,0,207 +chr3 57475351 rs6806444 T G 4254.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.702;DB;DP=120;Dels=0.01;FS=5.422;HaplotypeScore=0.4706;MLEAC=8;MLEAF=1.00;MQ=36.42;MQ0=0;MQRankSum=0.859;QD=35.45;ReadPosRankSum=1.672;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1537,117,0 1/1:4,35:39:79:1293,79,0 1/1:0,31:31:93:1189,93,0 1/1:1,8:9:18:235,18,0 +chr3 57487137 rs143757438 C A 34.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.846;DB;DP=87;Dels=0.00;FS=11.775;HaplotypeScore=4.0264;MLEAC=2;MLEAF=0.250;MQ=29.15;MQ0=0;MQRankSum=-1.017;QD=1.20;ReadPosRankSum=-2.499;SB=-2.369e+01 GT:AD:DP:GQ:PL 0/1:21,2:23:16:16,0,417 0/0:30,1:31:33:0,33,636 0/0:26,0:27:63:0,63,729 0/1:3,3:6:17:60,0,17 +chr3 58089827 . G C 346.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.241;DP=88;Dels=0.01;FS=22.227;HaplotypeScore=3.0525;MLEAC=4;MLEAF=0.500;MQ=30.54;MQ0=0;MQRankSum=-0.023;QD=3.94;ReadPosRankSum=0.752;SB=-1.238e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:65:65,0,283 0/1:14,7:21:99:199,0,150 0/1:23,3:26:38:38,0,435 0/1:16,5:21:87:87,0,199 +chr3 58112488 rs2362904 C T 395.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.271;DB;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=9.1844;MLEAC=1;MLEAF=0.125;MQ=36.36;MQ0=0;MQRankSum=2.182;QD=10.42;ReadPosRankSum=2.137;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,99,1203 0/1:25,13:38:99:432,0,623 0/0:41,0:41:99:0,117,1464 0/0:26,0:26:72:0,72,844 +chr3 58191103 . G C 44.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.495;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.8858;MLEAC=3;MLEAF=0.375;MQ=21.39;MQ0=0;MQRankSum=0.495;QD=3.69;ReadPosRankSum=2.475;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,59 0/0:6,0:6:3:0,3,32 0/1:7,3:10:54:61,0,54 1/1:1,1:2:3:24,3,0 +chr3 58196639 rs2292677 C T 324.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.147;DB;DP=59;Dels=0.00;FS=1.790;HaplotypeScore=1.7492;MLEAC=3;MLEAF=0.375;MQ=33.58;MQ0=0;MQRankSum=-1.333;QD=7.22;ReadPosRankSum=-0.155;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:13,6:19:99:172,0,280 0/0:14,0:14:33:0,33,410 0/1:8,5:13:99:151,0,239 0/1:11,2:13:45:45,0,302 +chr3 58398813 rs13071422 A G 675.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.303;DB;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=37.66;MQ0=0;MQRankSum=0.736;QD=12.06;ReadPosRankSum=-0.424;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:27:27,0,563 1/1:1,12:13:36:481,36,0 0/1:11,4:15:99:113,0,247 0/1:8,3:11:99:100,0,261 +chr3 58625751 . A G 53.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.578;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=6.0605;MLEAC=2;MLEAF=0.250;MQ=31.35;MQ0=0;MQRankSum=-4.847;QD=0.71;ReadPosRankSum=-1.585;SB=-1.177e-02 GT:AD:DP:GQ:PL 0/1:41,6:47:28:28,0,1037 0/1:22,6:28:67:67,0,476 0/0:28,2:30:15:0,15,829 0/0:23,2:25:48:0,48,549 +chr3 58641352 rs57504511 C T 1272.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.272;DB;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=0.8741;MLEAC=5;MLEAF=0.625;MQ=34.35;MQ0=0;MQRankSum=-2.672;QD=16.74;ReadPosRankSum=0.481;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:42:544,42,0 0/1:14,11:25:99:327,0,410 0/1:11,8:19:99:240,0,280 0/1:10,7:17:99:207,0,266 +chr3 59908126 rs1385816 A G 1950.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.396;DB;DP=184;Dels=0.00;FS=8.648;HaplotypeScore=0.2080;MLEAC=4;MLEAF=0.500;MQ=37.61;MQ0=0;MQRankSum=-5.110;QD=10.60;ReadPosRankSum=3.005;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:35,18:53:99:523,0,1203 0/1:32,15:47:99:431,0,1097 0/1:33,22:55:99:696,0,920 0/1:17,12:29:99:343,0,536 +chr3 61548016 . T G 212.09 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.319;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5501;MLEAC=4;MLEAF=0.500;MQ=30.82;MQ0=0;MQRankSum=-0.889;QD=4.00;ReadPosRankSum=0.487;SB=0.053 GT:AD:DP:GQ:PL 0/1:8,5:13:55:117,0,55 0/1:11,5:16:89:114,0,89 0/1:18,1:19:11:11,0,164 0/1:4,1:5:12:12,0,96 +chr3 62612013 rs2248008 C T 429.04 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.504;DB;DP=15;Dels=0.00;FS=11.761;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=30.48;MQ0=0;MQRankSum=1.504;QD=28.60;ReadPosRankSum=-1.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:219,18,0 1/1:0,4:4:12:130,12,0 1/1:0,2:2:6:79,6,0 1/1:1,1:2:3:39,3,0 +chr3 63594732 . A T 49.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.402;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=8.4168;MLEAC=3;MLEAF=0.375;MQ=27.52;MQ0=0;MQRankSum=-0.697;QD=0.96;ReadPosRankSum=2.279;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,3:24:36:36,0,351 0/1:13,3:16:44:44,0,224 0/0:18,0:18:27:0,27,252 0/1:10,1:11:12:12,0,186 +chr3 63601089 . T A 64.57 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.347;DP=153;Dels=0.00;FS=152.259;HaplotypeScore=9.5441;MLEAC=4;MLEAF=0.500;MQ=36.44;MQ0=0;MQRankSum=-5.631;QD=0.42;ReadPosRankSum=-1.422;SB=-3.741e+00 GT:AD:DP:GQ:PL 0/1:35,7:42:13:13,0,998 0/1:31,4:35:12:12,0,816 0/1:38,6:44:8:8,0,1156 0/1:26,6:32:73:73,0,775 +chr3 63973959 . T A 69.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.724;DP=236;Dels=0.00;FS=65.100;HaplotypeScore=6.6907;MLEAC=2;MLEAF=0.250;MQ=38.30;MQ0=0;MQRankSum=-4.659;QD=0.66;ReadPosRankSum=4.026;SB=-1.857e+00 GT:AD:DP:GQ:PL 0/1:55,5:60:19:19,0,1399 0/0:66,1:67:99:0,135,2027 0/0:60,3:63:66:0,66,1816 0/1:40,6:46:92:92,0,830 +chr3 63976113 . G C 148.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.540;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=11.6203;MLEAC=3;MLEAF=0.375;MQ=25.29;MQ0=0;MQRankSum=0.098;QD=2.86;ReadPosRankSum=1.104;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,4:15:65:65,0,161 0/1:14,2:16:42:42,0,181 0/1:17,4:21:84:84,0,286 0/0:8,1:9:6:0,6,74 +chr3 64138716 rs35843 A G 3557.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.649;DB;DP=101;Dels=0.00;FS=41.821;HaplotypeScore=1.1547;MLEAC=8;MLEAF=1.00;MQ=35.24;MQ0=0;MQRankSum=2.325;QD=35.22;ReadPosRankSum=0.694;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:78:1006,78,0 1/1:1,26:28:78:1000,78,0 1/1:4,32:36:65:1198,65,0 1/1:2,9:11:27:353,27,0 +chr3 64518994 rs1017537 T C 4379.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.455;DB;DP=128;Dels=0.02;FS=44.915;HaplotypeScore=0.7280;MLEAC=8;MLEAF=1.00;MQ=33.47;MQ0=0;MQRankSum=3.773;QD=34.21;ReadPosRankSum=0.889;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1608,129,0 1/1:2,29:31:87:1049,87,0 1/1:2,32:34:96:1202,96,0 1/1:3,15:18:42:520,42,0 +chr3 64606682 . G C 177.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.378;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.8470;MLEAC=4;MLEAF=0.500;MQ=33.90;MQ0=0;MQRankSum=-1.793;QD=2.28;ReadPosRankSum=0.793;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,2:24:18:18,0,327 0/1:15,3:18:37:37,0,199 0/1:19,2:22:23:23,0,260 0/1:9,5:14:52:142,0,52 +chr3 64619048 rs11717158 C T 161.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.206;DB;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.0858;MLEAC=1;MLEAF=0.125;MQ=33.89;MQ0=0;MQRankSum=0.514;QD=4.76;ReadPosRankSum=0.336;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,8:34:99:198,0,788 0/0:46,0:46:99:0,111,1347 0/0:41,0:41:99:0,114,1380 0/0:37,0:37:81:0,81,980 +chr3 64627752 rs7632802 C T 493.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.194;DB;DP=87;Dels=0.01;FS=2.458;HaplotypeScore=0.4971;MLEAC=3;MLEAF=0.375;MQ=30.00;MQ0=0;MQRankSum=0.382;QD=8.37;ReadPosRankSum=1.482;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:72:0,72,828 0/1:13,11:24:99:256,0,233 0/1:17,7:24:99:186,0,409 0/1:8,3:11:95:95,0,159 +chr3 65350830 . C T 307.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.683;DP=190;Dels=0.01;FS=112.048;HaplotypeScore=10.8793;MLEAC=4;MLEAF=0.500;MQ=30.95;MQ0=0;MQRankSum=-5.918;QD=1.62;ReadPosRankSum=4.254;SB=-1.027e+00 GT:AD:DP:GQ:PL 0/1:53,16:69:99:187,0,1259 0/1:40,10:50:76:76,0,912 0/1:38,10:48:81:81,0,903 0/1:20,2:22:5:5,0,484 +chr3 65674240 rs62245036 T C 71.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.575;DB;DP=34;Dels=0.00;FS=5.334;HaplotypeScore=1.8088;MLEAC=3;MLEAF=0.375;MQ=19.33;MQ0=0;MQRankSum=2.125;QD=2.66;ReadPosRankSum=0.975;SB=2.48 GT:AD:DP:GQ:PL 0/0:7,0:7:3:0,3,29 0/1:7,1:8:28:28,0,78 0/1:9,3:12:60:60,0,90 0/1:5,2:7:22:25,0,22 +chr3 66023933 . T C 140.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.054;DP=87;Dels=0.00;FS=70.038;HaplotypeScore=1.5939;MLEAC=4;MLEAF=0.500;MQ=37.38;MQ0=0;MQRankSum=-2.737;QD=1.62;ReadPosRankSum=-3.107;SB=-2.978e+00 GT:AD:DP:GQ:PL 0/1:15,2:17:31:31,0,408 0/1:22,4:26:78:78,0,510 0/1:19,4:23:71:71,0,298 0/1:20,1:21:1:1,0,305 +chr3 66433548 . T G 129.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.016;DP=159;Dels=0.01;FS=36.414;HaplotypeScore=11.9135;MLEAC=4;MLEAF=0.500;MQ=28.92;MQ0=0;MQRankSum=-0.104;QD=1.16;ReadPosRankSum=2.120;SB=-1.726e+00 GT:AD:DP:GQ:PL 0/1:35,4:39:21:21,0,797 0/1:36,3:39:25:25,0,623 0/0:44,4:48:2:0,2,891 0/1:26,6:32:99:124,0,335 +chr3 69129327 . G C 109.14 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.054;DP=21;Dels=0.05;FS=25.185;HaplotypeScore=4.4063;MLEAC=6;MLEAF=1.00;MQ=16.55;MQ0=0;MQRankSum=2.054;QD=6.06;ReadPosRankSum=-0.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,3:7:6:57,6,0 ./. 1/1:5,2:7:6:53,6,0 1/1:2,1:3:3:35,3,0 +chr3 69134288 rs11542220 C A 35.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.183;DB;DP=186;Dels=0.00;FS=14.264;HaplotypeScore=2.6903;MLEAC=1;MLEAF=0.125;MQ=34.45;MQ0=0;MQRankSum=-2.546;QD=0.86;ReadPosRankSum=0.398;SB=-2.122e+01 GT:AD:DP:GQ:PL 0/0:44,1:45:81:0,81,1326 0/0:46,4:50:30:0,30,1161 0/0:47,2:49:69:0,69,1424 0/1:36,5:42:72:72,0,690 +chr3 69230591 . A T 44.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.053;DP=243;Dels=0.01;FS=83.357;HaplotypeScore=13.0767;MLEAC=3;MLEAF=0.375;MQ=29.36;MQ0=0;MQRankSum=-1.878;QD=0.26;ReadPosRankSum=2.529;SB=0.709 GT:AD:DP:GQ:PL 0/1:61,5:66:37:37,0,1069 0/0:65,4:69:37:0,37,1179 0/1:53,5:58:20:20,0,739 0/1:44,4:48:31:31,0,567 +chr3 71247304 rs2037474 A G 351.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.492;DB;DP=74;Dels=0.00;FS=7.786;HaplotypeScore=1.0448;MLEAC=3;MLEAF=0.375;MQ=27.87;MQ0=0;MQRankSum=-3.626;QD=6.17;ReadPosRankSum=-1.622;SB=-1.780e+02 GT:AD:DP:GQ:PL 0/1:8,8:17:99:155,0,170 0/0:17,0:17:48:0,48,599 0/1:14,5:19:65:65,0,238 0/1:12,9:21:99:175,0,142 +chr3 73024174 . A C 126.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.019;DP=237;Dels=0.03;FS=24.741;HaplotypeScore=33.7228;MLEAC=2;MLEAF=0.250;MQ=30.51;MQ0=0;MQRankSum=-0.050;QD=1.15;ReadPosRankSum=0.915;SB=0.743 GT:AD:DP:GQ:PL 0/1:63,6:69:31:31,0,1217 0/0:57,2:59:36:0,36,1002 0/0:62,2:64:27:0,27,1016 0/1:33,6:39:99:137,0,436 +chr3 73438828 rs2306507 C G 38.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.572;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.4338;MLEAC=3;MLEAF=0.375;MQ=36.99;MQ0=0;MQRankSum=0.000;QD=19.35;ReadPosRankSum=-1.067;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:9:0,9,131 1/1:0,1:1:3:37,3,0 0/0:2,0:2:3:0,3,41 1/1:0,1:1:3:44,3,0 +chr3 73450130 . T C 770.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.020;DP=216;Dels=0.00;FS=35.025;HaplotypeScore=2.6969;MLEAC=4;MLEAF=0.500;MQ=35.09;MQ0=0;MQRankSum=-5.515;QD=3.57;ReadPosRankSum=1.361;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:51,17:68:99:401,0,879 0/1:52,7:59:84:84,0,1171 0/1:49,11:60:99:187,0,938 0/1:22,6:28:99:141,0,251 +chr3 75680995 . C A 41.30 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.322;DP=12;Dels=0.00;FS=2.398;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.500;MQ=17.03;MQ0=0;MQRankSum=1.221;QD=5.16;ReadPosRankSum=1.517;SB=-2.905e+01 GT:AD:DP:GQ:PL 0/1:1,1:2:18:26,0,18 ./. 0/1:4,2:6:26:50,0,26 ./. +chr3 75697540 rs149370257 T A 32.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.380;DB;DP=22;Dels=0.00;FS=11.996;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=10.11;MQ0=0;MQRankSum=1.380;QD=5.34;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:31,3,0 ./. 1/1:3,1:4:3:34,3,0 ./. +chr3 75714548 rs115660520 C G 303.26 . AC=7;AF=0.875;AN=8;BaseQRankSum=-1.044;DB;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=14.35;MQ0=0;MQRankSum=0.307;QD=4.89;ReadPosRankSum=1.393;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,5:25:26:34,0,26 1/1:3,9:12:3:31,3,0 1/1:4,9:13:12:146,12,0 1/1:1,10:11:12:135,12,0 +chr3 75718162 . C G 63.33 . AC=2;AF=0.250;AN=8;BaseQRankSum=4.237;DP=228;Dels=0.00;FS=18.823;HaplotypeScore=27.2434;MLEAC=2;MLEAF=0.250;MQ=15.13;MQ0=0;MQRankSum=2.090;QD=0.54;ReadPosRankSum=-2.801;SB=-5.134e-01 GT:AD:DP:GQ:PL 0/0:59,0:60:63:0,63,626 0/1:54,4:58:16:16,0,418 0/1:51,6:59:88:88,0,295 0/0:49,1:51:8:0,8,270 +chr3 75718317 rs75469027 G T 261.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.519;DB;DP=95;Dels=0.00;FS=8.937;HaplotypeScore=12.5028;MLEAC=4;MLEAF=0.500;MQ=21.51;MQ0=0;MQRankSum=2.460;QD=2.76;ReadPosRankSum=1.827;SB=-1.156e+02 GT:AD:DP:GQ:PL 0/1:18,2:23:10:10,0,267 0/1:17,4:25:99:103,0,124 0/1:14,6:25:99:146,0,131 0/1:17,2:22:45:45,0,109 +chr3 75718723 . C G 142.18 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.646;DP=197;Dels=0.01;FS=17.662;HaplotypeScore=25.8998;MLEAC=4;MLEAF=0.500;MQ=9.55;MQ0=0;MQRankSum=4.703;QD=0.72;ReadPosRankSum=-1.545;SB=5.52 GT:AD:DP:GQ:PL 0/1:36,4:45:11:77,0,11 0/1:44,2:47:9:9,0,88 0/1:45,2:54:37:37,0,81 0/1:38,5:50:61:61,0,102 +chr3 75786450 rs142392552 G A 35.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.558;DB;DP=22;Dels=0.05;FS=4.752;HaplotypeScore=1.4591;MLEAC=2;MLEAF=0.250;MQ=20.00;MQ0=0;MQRankSum=0.653;QD=2.56;ReadPosRankSum=-1.156;SB=-9.591e-03 GT:AD:DP:GQ:PL 0/0:3,2:5:6:0,6,77 0/1:3,2:5:18:18,0,28 0/1:6,2:8:26:57,0,26 0/0:3,0:3:3:0,3,39 +chr3 75787159 rs77322475 C T 45.20 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.063;DB;DP=18;Dels=0.00;FS=7.186;HaplotypeScore=0.2483;MLEAC=2;MLEAF=0.250;MQ=32.16;MQ0=0;MQRankSum=-0.189;QD=5.02;ReadPosRankSum=1.575;SB=-1.699e+01 GT:AD:DP:GQ:PL 0/1:2,2:4:65:65,0,72 0/0:4,0:4:9:0,9,109 0/1:4,1:5:21:21,0,126 0/0:4,0:5:12:0,12,136 +chr3 75788076 rs146581110 A C 36.77 . AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.91;MQ0=0;QD=18.39;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6:68,6,0 ./. ./. +chr3 75790585 rs147758847 C G 1652.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.324;DB;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=6.0922;MLEAC=4;MLEAF=0.500;MQ=29.91;MQ0=0;MQRankSum=-4.578;QD=9.08;ReadPosRankSum=2.136;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:20,25:48:99:592,0,445 0/1:30,23:53:99:505,0,908 0/1:30,17:48:99:267,0,850 0/1:17,13:33:99:331,0,471 +chr3 75790607 rs144075336 C T 1608.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.866;DB;DP=133;Dels=0.00;FS=5.141;HaplotypeScore=0.9902;MLEAC=4;MLEAF=0.500;MQ=27.08;MQ0=0;MQRankSum=-2.323;QD=12.09;ReadPosRankSum=1.839;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:9,27:36:99:617,0,144 0/1:18,20:38:99:437,0,476 0/1:16,18:34:99:252,0,404 0/1:12,13:25:99:345,0,283 +chr3 75790726 rs141438932 T C 337.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.939;DB;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=12.0426;MLEAC=4;MLEAF=0.500;MQ=36.23;MQ0=0;MQRankSum=-6.301;QD=2.03;ReadPosRankSum=-4.879;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:38,5:43:22:22,0,1295 0/1:34,7:41:99:103,0,1220 0/1:32,7:39:99:106,0,1115 0/1:34,9:43:99:149,0,978 +chr3 75790807 rs138854259 C G 1540.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.866;DB;DP=234;Dels=0.01;FS=36.882;HaplotypeScore=39.4421;MLEAC=4;MLEAF=0.500;MQ=18.33;MQ0=0;MQRankSum=8.199;QD=6.58;ReadPosRankSum=3.518;SB=-4.295e+02 GT:AD:DP:GQ:PL 0/1:34,26:60:99:540,0,167 0/1:42,11:53:99:188,0,161 0/1:47,17:64:99:377,0,200 0/1:32,23:55:87:478,0,87 +chr3 75790809 rs76585791 G A 873.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.450;DB;DP=224;Dels=0.02;FS=9.915;HaplotypeScore=34.1150;MLEAC=4;MLEAF=0.500;MQ=17.64;MQ0=0;MQRankSum=5.161;QD=3.90;ReadPosRankSum=3.417;SB=-2.790e+02 GT:AD:DP:GQ:PL 0/1:42,15:57:99:249,0,373 0/1:44,6:51:77:77,0,217 0/1:45,16:61:99:293,0,238 0/1:34,16:50:99:297,0,212 +chr3 75791073 . AG A 887.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.947;DP=106;FS=0.000;HaplotypeScore=187.8762;MLEAC=4;MLEAF=0.500;MQ=22.81;MQ0=0;MQRankSum=-1.977;QD=8.37;ReadPosRankSum=0.833;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:18,9:24:99:276,0,556 0/1:17,11:17:99:268,0,335 0/1:19,9:20:99:295,0,375 0/1:13,5:12:99:100,0,279 +chr3 75793775 rs149510956 T G 507.77 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.531;DB;DP=17;Dels=0.00;FS=12.304;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=32.24;MQ0=0;MQRankSum=1.531;QD=29.87;ReadPosRankSum=1.123;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,5:6:12:140,12,0 1/1:0,4:4:12:165,12,0 1/1:0,6:6:18:210,18,0 1/1:0,1:1:3:31,3,0 +chr3 75986874 rs7610755 G C 1429.29 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.766;DB;DP=110;Dels=0.02;FS=14.367;HaplotypeScore=1.3731;MLEAC=8;MLEAF=1.00;MQ=23.97;MQ0=0;MQRankSum=1.951;QD=12.99;ReadPosRankSum=-0.198;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:10,22:32:39:441,39,0 1/1:4,26:30:39:505,39,0 1/1:9,26:35:22:460,22,0 1/1:6,5:11:6:62,6,0 +chr3 76484183 rs3849491 T C 188.59 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.514;DB;DP=95;Dels=0.01;FS=4.898;HaplotypeScore=1.1009;MLEAC=6;MLEAF=0.750;MQ=12.94;MQ0=0;MQRankSum=-2.324;QD=1.99;ReadPosRankSum=0.062;SB=-2.837e+01 GT:AD:DP:GQ:PL 0/1:13,14:27:26:36,0,26 1/1:3,23:26:3:31,3,0 1/1:13,11:24:9:122,9,0 0/1:7,10:17:42:43,0,42 +chr3 78684891 . A T 263.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.817;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=10.4703;MLEAC=4;MLEAF=0.500;MQ=32.75;MQ0=0;MQRankSum=-3.948;QD=1.42;ReadPosRankSum=2.532;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,6:40:71:71,0,592 0/1:33,5:38:75:75,0,491 0/1:51,5:56:24:24,0,888 0/1:43,8:51:99:136,0,856 +chr3 78700901 rs6795556 G T 2338.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.140;DB;DP=219;Dels=0.01;FS=3.054;HaplotypeScore=1.2323;MLEAC=3;MLEAF=0.375;MQ=40.93;MQ0=0;MQRankSum=-3.033;QD=14.71;ReadPosRankSum=2.577;SB=-4.500e+02 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,162,2168 0/1:31,25:57:99:868,0,1082 0/1:37,22:59:99:711,0,1140 0/1:19,22:41:99:803,0,579 +chr3 81810510 . G T 105.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.119;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.2103;MLEAC=4;MLEAF=0.500;MQ=27.03;MQ0=0;MQRankSum=1.159;QD=2.16;ReadPosRankSum=-0.440;SB=-1.187e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:52:52,0,146 0/1:6,2:8:37:37,0,53 0/1:12,2:15:47:47,0,234 0/1:12,1:13:12:12,0,129 +chr3 86114693 . A G 84.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.933;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=2.2242;MLEAC=3;MLEAF=0.375;MQ=35.74;MQ0=0;MQRankSum=-3.832;QD=1.75;ReadPosRankSum=0.354;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,5:20:89:89,0,417 0/1:17,4:21:30:30,0,529 0/0:19,1:20:15:0,15,493 0/1:5,1:6:7:7,0,127 +chr3 86267930 rs2048591 C T 33.26 . AC=2;AF=0.500;AN=4;BaseQRankSum=-1.231;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=3;MLEAF=0.750;MQ=27.11;MQ0=0;MQRankSum=0.358;QD=8.31;ReadPosRankSum=1.231;SB=-2.925e+01 GT:AD:DP:GQ:PL ./. 0/0:2,0:2:3:0,3,42 1/1:2,2:4:6:68,6,0 ./. +chr3 88999967 rs74999183 G A 262.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.967;DB;DP=75;Dels=0.01;FS=1.291;HaplotypeScore=1.1175;MLEAC=3;MLEAF=0.375;MQ=27.95;MQ0=0;MQRankSum=0.122;QD=5.26;ReadPosRankSum=1.693;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:15,7:22:89:89,0,488 0/0:23,0:24:51:0,51,549 0/1:13,8:22:99:152,0,212 0/1:4,2:6:65:65,0,77 +chr3 89468413 . A G 174.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.795;DP=157;Dels=0.00;FS=57.744;HaplotypeScore=5.5323;MLEAC=3;MLEAF=0.375;MQ=32.07;MQ0=0;MQRankSum=-1.582;QD=1.19;ReadPosRankSum=2.657;SB=0.064 GT:AD:DP:GQ:PL 0/1:39,8:47:99:122,0,1044 0/1:45,4:49:15:15,0,1053 0/1:43,7:50:80:80,0,993 0/0:11,0:11:21:0,21,220 +chr3 89521541 . A C 461.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.277;DP=88;Dels=0.01;FS=9.394;HaplotypeScore=29.0530;MLEAC=4;MLEAF=0.500;MQ=19.49;MQ0=0;MQRankSum=2.568;QD=5.25;ReadPosRankSum=0.177;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,8:22:4:121,0,4 0/1:11,7:18:7:136,0,7 0/1:15,9:24:48:154,0,48 0/1:16,7:23:92:92,0,119 +chr3 93780298 . T A 44.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.261;DP=224;Dels=0.01;FS=28.284;HaplotypeScore=7.9636;MLEAC=3;MLEAF=0.375;MQ=15.30;MQ0=0;MQRankSum=-0.025;QD=0.26;ReadPosRankSum=0.792;SB=-4.366e+00 GT:AD:DP:GQ:PL 0/0:52,2:54:27:0,27,320 0/1:52,4:56:46:46,0,116 0/1:64,2:66:1:1,0,267 0/1:44,2:46:37:37,0,223 +chr3 97194422 rs7624823 T G 2667.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.217;DB;DP=84;Dels=0.00;FS=15.682;HaplotypeScore=1.9550;MLEAC=8;MLEAF=1.00;MQ=35.16;MQ0=0;MQRankSum=-0.017;QD=31.76;ReadPosRankSum=1.117;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,18:21:34:680,34,0 1/1:4,28:32:84:1094,84,0 1/1:2,18:20:48:630,48,0 1/1:3,8:11:24:303,24,0 +chr3 97599936 . C G 180.27 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.237;DP=60;Dels=0.00;FS=20.538;HaplotypeScore=13.1178;MLEAC=3;MLEAF=0.500;MQ=23.82;MQ0=0;MQRankSum=0.343;QD=3.16;ReadPosRankSum=2.345;SB=-1.737e+00 GT:AD:DP:GQ:PL 0/1:17,2:19:37:37,0,72 0/1:15,4:19:79:79,0,115 0/1:14,4:19:27:103,0,27 ./. +chr3 97783546 rs1873627 A G 295.09 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.104;DB;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.6433;MLEAC=5;MLEAF=0.625;MQ=29.74;MQ0=0;MQRankSum=-2.889;QD=6.02;ReadPosRankSum=-0.333;SB=-5.794e+01 GT:AD:DP:GQ:PL 0/1:8,5:13:72:72,0,253 1/1:1,7:8:12:136,12,0 0/1:11,4:15:34:34,0,312 0/1:8,5:13:98:98,0,199 +chr3 98311777 . G C 48.28 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.620;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.1426;MLEAC=3;MLEAF=0.375;MQ=26.01;MQ0=0;MQRankSum=-0.231;QD=4.02;ReadPosRankSum=0.231;SB=20.81 GT:AD:DP:GQ:PL 1/1:2,3:5:6:65,6,0 1/1:5,1:7:3:28,3,0 0/0:6,0:6:9:0,9,83 0/0:5,0:5:6:0,6,44 +chr3 98377397 . CAACT C 844.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.479;DP=91;FS=1.364;HaplotypeScore=8.7170;MLEAC=3;MLEAF=0.375;MQ=19.84;MQ0=0;MQRankSum=-0.843;QD=13.41;ReadPosRankSum=1.607;SB=-4.170e+02 GT:AD:DP:GQ:PL 0/1:12,7:9:99:199,0,450 0/0:27,0:10:27:0,27,638 0/1:14,12:12:99:420,0,258 0/1:10,6:9:99:278,0,247 +chr3 98491619 rs2334230 G T 187.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.883;DB;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.4925;MLEAC=1;MLEAF=0.125;MQ=35.84;MQ0=0;MQRankSum=-2.281;QD=7.19;ReadPosRankSum=0.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,8:26:99:223,0,500 0/0:39,0:39:99:0,108,1371 0/0:36,0:36:99:0,105,1342 0/0:4,0:4:12:0,12,162 +chr3 99979995 . T A 87.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.476;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.9452;MLEAC=3;MLEAF=0.375;MQ=27.70;MQ0=0;MQRankSum=0.152;QD=1.75;ReadPosRankSum=1.840;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,3:22:58:58,0,317 0/1:17,3:20:56:56,0,182 0/0:10,1:11:12:0,12,155 0/1:7,1:8:16:16,0,69 +chr3 100015146 rs3772698 G T 3029.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.977;DB;DP=140;Dels=0.04;FS=0.000;HaplotypeScore=3.0509;MLEAC=7;MLEAF=0.875;MQ=31.98;MQ0=0;MQRankSum=-4.175;QD=21.64;ReadPosRankSum=1.695;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:7,29:36:81:887,81,0 0/1:23,18:41:99:539,0,544 1/1:3,40:43:99:1289,108,0 1/1:3,12:15:33:359,33,0 +chr3 100073648 . A T 56.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.488;DP=165;Dels=0.00;FS=33.371;HaplotypeScore=7.1252;MLEAC=1;MLEAF=0.125;MQ=35.11;MQ0=0;MQRankSum=-3.819;QD=1.21;ReadPosRankSum=-0.898;SB=-1.632e+00 GT:AD:DP:GQ:PL 0/0:48,1:49:84:0,84,1339 0/1:40,7:47:93:93,0,1033 0/0:44,1:45:77:0,77,1237 0/0:23,1:24:29:0,29,652 +chr3 100170596 rs75122231 T C 197.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=3.099;DB;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3513;MLEAC=2;MLEAF=0.250;MQ=35.82;MQ0=0;MQRankSum=-4.390;QD=2.99;ReadPosRankSum=-0.332;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:25,6:31:99:112,0,755 0/1:28,7:35:99:127,0,857 0/0:30,0:31:87:0,87,1141 0/0:23,0:23:57:0,57,730 +chr3 100174613 . C T 335.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.069;DP=82;Dels=0.01;FS=44.769;HaplotypeScore=13.5594;MLEAC=4;MLEAF=0.500;MQ=24.80;MQ0=0;MQRankSum=0.036;QD=4.09;ReadPosRankSum=-0.425;SB=0.554 GT:AD:DP:GQ:PL 0/1:18,4:22:68:68,0,175 0/1:16,9:25:99:187,0,131 0/1:18,6:24:63:63,0,244 0/1:7,3:10:60:60,0,63 +chr3 100471876 . T C 143.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.255;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.6984;MLEAC=4;MLEAF=0.500;MQ=20.15;MQ0=0;MQRankSum=0.730;QD=2.80;ReadPosRankSum=3.131;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,6:22:34:83,0,34 0/1:18,3:21:54:54,0,91 0/0:16,1:17:9:0,9,92 1/1:6,2:8:6:51,6,0 +chr3 100473448 . G T 33.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.108;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=6.8344;MLEAC=2;MLEAF=0.250;MQ=26.93;MQ0=0;MQRankSum=0.011;QD=0.72;ReadPosRankSum=0.097;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,2:24:15:15,0,340 0/0:21,1:22:45:0,45,415 0/0:25,0:26:42:0,42,450 0/1:18,3:21:59:59,0,113 +chr3 100493404 . A T 33.70 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.200;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.7652;MLEAC=2;MLEAF=0.250;MQ=34.27;MQ0=0;MQRankSum=-2.327;QD=0.86;ReadPosRankSum=-0.075;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,0:24:39:0,39,477 0/1:24,4:28:55:55,0,426 0/0:24,0:24:45:0,45,482 0/1:10,1:11:20:20,0,37 +chr3 100558859 . C T 252.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.074;DP=52;Dels=0.00;FS=10.897;HaplotypeScore=5.9168;MLEAC=4;MLEAF=0.500;MQ=34.01;MQ0=0;MQRankSum=-0.730;QD=4.86;ReadPosRankSum=1.534;SB=-1.188e-02 GT:AD:DP:GQ:PL 0/1:9,4:13:92:92,0,133 0/1:15,3:18:63:63,0,224 0/1:8,2:10:45:45,0,114 0/1:7,4:11:95:95,0,136 +chr3 100604455 . A G 72.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.331;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9793;MLEAC=4;MLEAF=0.500;MQ=26.85;MQ0=0;MQRankSum=-0.834;QD=1.21;ReadPosRankSum=-2.845;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:34:34,0,231 0/1:17,2:19:16:16,0,259 0/1:15,3:18:45:45,0,220 0/1:4,1:5:20:20,0,21 +chr3 100630609 . T A 83.23 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.564;DP=79;Dels=0.03;FS=66.067;HaplotypeScore=15.9489;MLEAC=4;MLEAF=0.500;MQ=19.80;MQ0=0;MQRankSum=0.770;QD=1.05;ReadPosRankSum=1.383;SB=-2.442e+00 GT:AD:DP:GQ:PL 0/1:15,6:21:77:77,0,107 0/1:14,3:18:11:11,0,92 0/1:21,3:25:10:10,0,112 0/1:11,2:13:27:27,0,56 +chr3 100964800 . T A 110.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.770;DP=240;Dels=0.00;FS=61.447;HaplotypeScore=2.6031;MLEAC=3;MLEAF=0.375;MQ=36.44;MQ0=0;MQRankSum=-3.790;QD=0.69;ReadPosRankSum=-2.018;SB=-2.412e+00 GT:AD:DP:GQ:PL 0/1:49,3:52:2:2,0,1129 0/1:59,6:65:54:54,0,1198 0/0:76,2:79:97:0,97,1918 0/1:38,6:44:95:95,0,890 +chr3 101133155 rs7622940 T C 42.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.716;DB;DP=34;Dels=0.00;FS=7.364;HaplotypeScore=0.9093;MLEAC=4;MLEAF=0.500;MQ=11.68;MQ0=0;MQRankSum=0.893;QD=2.85;ReadPosRankSum=-0.133;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,1:6:6:0,6,52 0/0:8,5:13:3:0,3,31 1/1:3,8:11:6:60,6,0 1/1:0,4:4:3:26,3,0 +chr3 101231921 rs9682313 T C 1597.02 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.496;DB;DP=85;Dels=0.00;FS=23.313;HaplotypeScore=2.5382;MLEAC=8;MLEAF=1.00;MQ=28.65;MQ0=0;MQRankSum=1.920;QD=18.79;ReadPosRankSum=2.225;SB=-4.101e+01 GT:AD:DP:GQ:PL 1/1:3,14:17:18:446,18,0 1/1:8,14:22:33:340,33,0 1/1:6,22:28:41:649,41,0 1/1:10,8:18:18:201,18,0 +chr3 101241683 . A C 46.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.736;DP=258;Dels=0.00;FS=71.021;HaplotypeScore=6.6472;MLEAC=2;MLEAF=0.250;MQ=33.50;MQ0=0;MQRankSum=-3.517;QD=0.44;ReadPosRankSum=1.731;SB=-1.055e+00 GT:AD:DP:GQ:PL 0/0:55,4:61:16:0,16,1231 0/1:66,8:74:50:50,0,1518 0/0:85,5:90:47:0,47,1757 0/1:29,4:33:38:38,0,526 +chr3 101298838 . T A 84.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.716;DP=127;Dels=0.02;FS=0.000;HaplotypeScore=11.5636;MLEAC=3;MLEAF=0.375;MQ=18.30;MQ0=0;MQRankSum=2.683;QD=0.85;ReadPosRankSum=0.403;SB=16.87 GT:AD:DP:GQ:PL 0/1:26,4:31:39:92,0,39 0/1:30,1:33:12:12,0,91 0/1:33,1:34:23:23,0,33 0/0:26,0:27:14:0,14,126 +chr3 101571549 . T C 286.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.265;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.5522;MLEAC=3;MLEAF=0.375;MQ=30.87;MQ0=0;MQRankSum=-3.452;QD=4.28;ReadPosRankSum=1.723;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,7:13:99:159,0,110 0/1:31,4:35:24:24,0,927 0/1:12,7:19:99:146,0,189 0/0:5,0:5:6:0,6,52 +chr3 101575882 rs595788 T C 668.22 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.801;DB;DP=89;Dels=0.00;FS=6.585;HaplotypeScore=6.0843;MLEAC=5;MLEAF=0.625;MQ=19.83;MQ0=0;MQRankSum=0.734;QD=7.51;ReadPosRankSum=0.039;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,13:17:15:147,15,0 0/1:14,11:25:55:188,0,55 0/1:6,15:21:5:171,0,5 0/1:1,25:26:4:205,0,4 +chr3 101576035 rs111508285 A C 440.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.611;DB;DP=214;Dels=0.00;FS=9.062;HaplotypeScore=20.5819;MLEAC=3;MLEAF=0.375;MQ=27.36;MQ0=0;MQRankSum=-4.610;QD=3.10;ReadPosRankSum=-0.067;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:40,17:57:99:219,0,785 0/0:69,3:72:99:0,141,2408 0/1:30,14:44:99:147,0,445 0/1:28,12:40:99:118,0,275 +chr3 103349722 rs12634373 T G 37.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.493;DB;DP=26;Dels=0.04;FS=2.632;HaplotypeScore=0.7724;MLEAC=3;MLEAF=0.375;MQ=24.00;MQ0=0;MQRankSum=0.134;QD=1.48;ReadPosRankSum=0.313;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,39 0/1:9,2:11:41:41,0,122 0/1:7,1:8:14:14,0,144 0/1:4,1:5:23:23,0,41 +chr3 103781824 rs148513593 C T 851.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.466;DB;DP=134;Dels=0.00;FS=2.593;HaplotypeScore=1.4712;MLEAC=3;MLEAF=0.375;MQ=32.43;MQ0=0;MQRankSum=-3.399;QD=8.78;ReadPosRankSum=1.155;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,11:28:99:307,0,426 0/0:36,0:37:81:0,81,1008 0/1:25,17:42:99:386,0,500 0/1:19,8:27:99:202,0,335 +chr3 105086281 . G C 37.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.778;DP=71;Dels=0.01;FS=13.126;HaplotypeScore=1.0613;MLEAC=3;MLEAF=0.375;MQ=29.92;MQ0=0;MQRankSum=-2.556;QD=0.73;ReadPosRankSum=-1.586;SB=-1.879e+00 GT:AD:DP:GQ:PL 0/0:17,2:19:36:0,36,400 0/1:13,2:15:35:35,0,227 0/1:18,4:22:40:40,0,383 0/1:12,2:14:4:4,0,300 +chr3 105312417 . T G 73 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.159;DP=11;Dels=0.00;FS=7.782;HaplotypeScore=1.2632;MLEAC=8;MLEAF=1.00;MQ=17.37;MQ0=0;MQRankSum=1.307;QD=6.64;ReadPosRankSum=-0.361;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,1:5:3:25,3,0 1/1:0,1:1:3:26,3,0 1/1:1,1:2:3:25,3,0 1/1:1,2:3:3:33,3,0 +chr3 107451907 rs4855764 C T 2260.69 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.960;DB;DP=80;Dels=0.01;FS=53.347;HaplotypeScore=2.4379;MLEAC=7;MLEAF=0.875;MQ=32.13;MQ0=0;MQRankSum=3.295;QD=28.26;ReadPosRankSum=1.098;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,16:19:48:611,48,0 1/1:5,17:22:48:627,48,0 0/1:5,15:20:20:529,0,20 1/1:4,14:18:42:538,42,0 +chr3 107882643 rs327168 G A 487.71 . AC=8;AF=1.00;AN=8;DB;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.2080;MLEAC=8;MLEAF=1.00;MQ=22.98;MQ0=0;QD=21.20;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:15:152,15,0 1/1:0,9:9:24:228,24,0 1/1:2,4:6:12:115,12,0 1/1:0,1:1:3:31,3,0 +chr3 107937301 . T G 141.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.024;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.9310;MLEAC=3;MLEAF=0.375;MQ=22.97;MQ0=0;MQRankSum=-1.000;QD=3.92;ReadPosRankSum=2.025;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:12:12,0,82 0/1:7,5:12:71:87,0,71 0/1:9,4:13:59:83,0,59 0/0:5,0:5:3:0,3,31 +chr3 107937347 . A G 532.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.190;DP=148;Dels=0.00;FS=145.409;HaplotypeScore=5.6020;MLEAC=4;MLEAF=0.500;MQ=33.07;MQ0=0;MQRankSum=-0.694;QD=3.60;ReadPosRankSum=1.669;SB=5.398e-03 GT:AD:DP:GQ:PL 0/1:33,10:43:99:217,0,941 0/1:34,8:44:99:125,0,836 0/1:33,10:43:99:149,0,743 0/1:14,4:18:84:84,0,209 +chr3 108096227 rs1463425 G C 652.26 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.569;DB;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.3325;MLEAC=8;MLEAF=1.00;MQ=31.66;MQ0=0;MQRankSum=1.569;QD=29.65;ReadPosRankSum=0.083;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,6:6:18:222,18,0 1/1:0,5:5:12:167,12,0 1/1:0,6:6:18:205,18,0 1/1:2,3:5:9:97,9,0 +chr3 108218999 . A C 89.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.331;DP=128;Dels=0.00;FS=14.824;HaplotypeScore=2.0641;MLEAC=2;MLEAF=0.250;MQ=36.42;MQ0=0;MQRankSum=-0.763;QD=1.63;ReadPosRankSum=-1.845;SB=0.078 GT:AD:DP:GQ:PL 0/0:34,0:34:81:0,81,1040 0/1:22,4:27:68:68,0,630 0/0:37,2:39:39:0,39,1057 0/1:24,4:28:63:63,0,659 +chr3 108288430 . A C 168.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.779;DP=105;Dels=0.01;FS=4.717;HaplotypeScore=4.5705;MLEAC=4;MLEAF=0.500;MQ=31.19;MQ0=0;MQRankSum=-1.255;QD=1.61;ReadPosRankSum=2.966;SB=-2.186e-01 GT:AD:DP:GQ:PL 0/1:29,2:31:11:11,0,572 0/1:26,3:31:56:56,0,438 0/1:21,3:24:45:45,0,386 0/1:13,5:18:99:99,0,183 +chr3 108541931 rs5851618 CAT C 278.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.073;DB;DP=14;FS=0.000;HaplotypeScore=1.7869;MLEAC=2;MLEAF=0.250;MQ=30.38;MQ0=0;MQRankSum=-0.259;QD=39.81;ReadPosRankSum=0.869;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:2,5:6:18:332,18,0 0/0:2,0:2:6:0,6,118 0/0:3,0:3:9:0,9,174 0/0:1,0:2:3:0,3,55 +chr3 108567982 . A T 117.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.565;DP=82;Dels=0.02;FS=0.000;HaplotypeScore=6.1814;MLEAC=3;MLEAF=0.375;MQ=20.93;MQ0=0;MQRankSum=0.788;QD=1.63;ReadPosRankSum=-0.389;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,4:29:63:63,0,164 0/1:15,6:21:88:88,0,118 0/1:18,1:20:6:6,0,168 0/0:9,1:10:3:0,3,25 +chr3 108690205 . T A 47.46 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.010;DP=160;Dels=0.00;FS=26.849;HaplotypeScore=1.4681;MLEAC=2;MLEAF=0.250;MQ=36.60;MQ0=0;MQRankSum=-1.868;QD=0.71;ReadPosRankSum=-0.055;SB=-5.580e+00 GT:AD:DP:GQ:PL 0/0:41,3:44:2:0,2,989 0/0:48,1:49:64:0,64,1040 0/1:41,5:47:79:79,0,907 0/1:19,1:20:6:6,0,280 +chr3 108725862 rs2044589 T C 646.36 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.407;DB;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=6.9201;MLEAC=5;MLEAF=0.625;MQ=33.48;MQ0=0;MQRankSum=-5.720;QD=8.08;ReadPosRankSum=0.954;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,8:28:99:128,0,696 1/1:2,17:19:48:473,48,0 0/1:18,5:23:86:86,0,577 0/1:8,1:9:4:4,0,178 +chr3 109635659 rs605795 C T 1044.74 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.422;DB;DP=134;Dels=0.00;FS=1.918;HaplotypeScore=1.1286;MLEAC=6;MLEAF=0.750;MQ=24.15;MQ0=0;MQRankSum=-3.731;QD=7.80;ReadPosRankSum=3.376;SB=-1.898e+02 GT:AD:DP:GQ:PL 0/1:26,14:40:99:123,0,616 0/1:4,40:44:5:286,0,5 1/1:3,35:38:45:540,45,0 1/1:2,10:12:12:140,12,0 +chr3 110845000 . T C 37.66 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.303;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=5.7792;MLEAC=3;MLEAF=0.375;MQ=24.78;MQ0=0;MQRankSum=0.788;QD=1.98;ReadPosRankSum=0.424;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,1:4:17:17,0,26 0/1:7,1:8:16:19,0,16 0/0:11,0:11:9:0,9,78 0/1:4,2:6:18:44,0,18 +chr3 111356045 . G A 391.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.888;DP=76;Dels=0.00;FS=5.444;HaplotypeScore=1.8441;MLEAC=4;MLEAF=0.500;MQ=31.99;MQ0=0;MQRankSum=0.478;QD=5.15;ReadPosRankSum=0.614;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:99:100,0,124 0/1:16,5:22:99:107,0,252 0/1:19,4:23:78:105,0,78 0/1:10,4:14:18:122,0,18 +chr3 111356083 rs1533270 G C 2397.31 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.464;DB;DP=89;Dels=0.03;FS=1.704;HaplotypeScore=3.4812;MLEAC=8;MLEAF=1.00;MQ=31.05;MQ0=0;MQRankSum=1.756;QD=26.94;ReadPosRankSum=3.562;SB=-1.166e+03 GT:AD:DP:GQ:PL 0/1:4,16:21:6:526,0,6 1/1:1,21:23:36:630,36,0 1/1:2,32:34:90:1054,90,0 1/1:1,7:8:18:229,18,0 +chr3 111632222 . C T 115.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.422;DP=278;Dels=0.00;FS=52.677;HaplotypeScore=6.2270;MLEAC=2;MLEAF=0.250;MQ=34.16;MQ0=0;MQRankSum=-4.478;QD=0.84;ReadPosRankSum=3.191;SB=-1.671e+00 GT:AD:DP:GQ:PL 0/0:67,5:72:67:0,67,1856 0/1:65,9:74:91:91,0,1822 0/0:68,1:69:99:0,129,1884 0/1:56,7:63:66:66,0,1451 +chr3 111639353 rs937551 G T 1032.31 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.021;DB;DP=36;Dels=0.00;FS=22.718;HaplotypeScore=0.5297;MLEAC=8;MLEAF=1.00;MQ=31.50;MQ0=0;MQRankSum=4.021;QD=28.68;ReadPosRankSum=1.464;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:30:391,30,0 1/1:4,6:10:18:229,18,0 1/1:1,10:11:30:384,30,0 1/1:3,2:5:6:67,6,0 +chr3 111705692 . A C 136.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.149;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.6409;MLEAC=1;MLEAF=0.125;MQ=30.35;MQ0=0;MQRankSum=-0.433;QD=10.54;ReadPosRankSum=0.582;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:36:0,36,439 0/1:7,6:13:99:173,0,139 0/0:14,0:14:36:0,36,415 0/0:11,0:11:30:0,30,352 +chr3 111730546 rs3749310 G A 1648.79 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.944;DB;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=0.2496;MLEAC=6;MLEAF=0.750;MQ=34.12;MQ0=0;MQRankSum=-2.932;QD=22.90;ReadPosRankSum=1.520;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,10:20:99:281,0,353 0/1:6,6:12:99:192,0,169 1/1:2,17:19:51:624,51,0 1/1:3,17:20:29:598,29,0 +chr3 111730591 rs3749311 G T 1672.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.275;DB;DP=92;Dels=0.01;FS=4.109;HaplotypeScore=1.5842;MLEAC=6;MLEAF=0.750;MQ=33.87;MQ0=0;MQRankSum=-3.332;QD=18.18;ReadPosRankSum=0.311;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,4:23:60:60,0,650 0/1:15,6:21:99:147,0,460 1/1:0,20:20:60:726,60,0 1/1:5,22:27:66:786,66,0 +chr3 111845861 . C T 71.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.711;DP=112;Dels=0.00;FS=10.171;HaplotypeScore=1.6861;MLEAC=2;MLEAF=0.250;MQ=31.02;MQ0=0;MQRankSum=-1.030;QD=1.89;ReadPosRankSum=2.912;SB=-1.384e+00 GT:AD:DP:GQ:PL 0/1:20,3:23:53:53,0,264 0/0:34,0:34:48:0,48,567 0/0:37,2:40:11:0,11,584 0/1:12,3:15:60:60,0,184 +chr3 112066626 . C G 66.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.519;DP=86;Dels=0.02;FS=42.118;HaplotypeScore=26.2341;MLEAC=3;MLEAF=0.375;MQ=22.98;MQ0=0;MQRankSum=0.161;QD=0.96;ReadPosRankSum=-0.269;SB=-1.791e-01 GT:AD:DP:GQ:PL 0/1:16,3:20:36:36,0,122 0/1:19,1:21:16:16,0,154 0/1:19,3:26:57:57,0,131 0/0:16,1:17:18:0,18,189 +chr3 112243557 . A G 73 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.964;DP=340;Dels=0.00;FS=36.100;HaplotypeScore=1.2000;MLEAC=3;MLEAF=0.375;MQ=9.81;MQ0=0;MQRankSum=4.724;QD=0.30;ReadPosRankSum=0.918;SB=-1.349e-02 GT:AD:DP:GQ:PL 0/1:88,2:90:7:7,0,85 0/0:93,1:94:18:0,18,209 0/1:87,2:89:34:34,0,91 0/1:59,8:67:42:74,0,42 +chr3 112267523 rs9809247 G A 2673.32 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.385;DB;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=0.7890;MLEAC=8;MLEAF=1.00;MQ=35.05;MQ0=0;MQRankSum=-0.406;QD=33.42;ReadPosRankSum=0.730;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,19:20:57:697,57,0 1/1:0,18:18:54:647,54,0 1/1:1,28:29:50:1067,50,0 0/1:3,9:12:1:301,0,1 +chr3 112709861 . G C 67.66 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.027;DP=59;Dels=0.03;FS=11.195;HaplotypeScore=11.2985;MLEAC=3;MLEAF=0.375;MQ=24.25;MQ0=0;MQRankSum=-0.922;QD=1.47;ReadPosRankSum=-1.816;SB=-7.038e+00 GT:AD:DP:GQ:PL 0/1:9,2:11:31:31,0,95 0/0:12,1:13:4:0,4,232 0/1:17,5:22:63:63,0,167 0/1:8,3:11:15:15,0,48 +chr3 112997141 rs3814401 G A 444.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.599;DB;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.1969;MLEAC=3;MLEAF=0.375;MQ=29.60;MQ0=0;MQRankSum=-0.135;QD=11.12;ReadPosRankSum=0.868;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,7:16:99:212,0,203 0/0:10,1:11:15:0,15,178 0/1:6,6:12:99:166,0,127 0/1:7,5:12:99:110,0,120 +chr3 113027118 . A T 53.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.363;DP=93;Dels=0.01;FS=6.967;HaplotypeScore=4.9819;MLEAC=3;MLEAF=0.375;MQ=32.81;MQ0=0;MQRankSum=-3.340;QD=0.80;ReadPosRankSum=1.911;SB=0.789 GT:AD:DP:GQ:PL 0/0:23,4:27:4:0,4,799 0/1:20,4:24:57:57,0,527 0/1:28,4:32:27:27,0,711 0/1:8,1:9:10:10,0,116 +chr3 113507630 . C A 30.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.589;DP=173;Dels=0.00;FS=59.054;HaplotypeScore=20.8847;MLEAC=1;MLEAF=0.125;MQ=33.64;MQ0=0;MQRankSum=-1.995;QD=1.15;ReadPosRankSum=0.742;SB=-6.307e+00 GT:AD:DP:GQ:PL 0/0:42,2:44:39:0,39,1120 0/0:49,1:52:53:0,53,936 0/0:47,2:51:20:0,20,809 0/1:20,3:26:66:66,0,417 +chr3 113594987 . T A 66.47 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.749;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=13.5292;MLEAC=2;MLEAF=0.500;MQ=23.19;MQ0=0;MQRankSum=0.143;QD=1.80;ReadPosRankSum=-0.387;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:15,4:19:12:65,0,12 0/1:16,2:18:14:36,0,14 ./. +chr3 118897239 rs9868984 G A 50.01 . AC=4;AF=1.00;AN=4;DB;DP=7;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=21.56;MQ0=0;QD=16.67;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:41,3,0 ./. 1/1:0,1:1:3:42,3,0 +chr3 118909689 . T G 864.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.236;DP=280;Dels=0.00;FS=0.000;HaplotypeScore=7.2855;MLEAC=4;MLEAF=0.500;MQ=34.18;MQ0=0;MQRankSum=-5.938;QD=3.09;ReadPosRankSum=1.069;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:85,14:99:99:200,0,2129 0/1:61,12:73:99:155,0,1717 0/1:59,17:76:99:277,0,1627 0/1:20,11:32:99:275,0,225 +chr3 118943035 . G A 35.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.190;DP=142;Dels=0.00;FS=42.237;HaplotypeScore=1.7196;MLEAC=1;MLEAF=0.125;MQ=34.48;MQ0=0;MQRankSum=-3.195;QD=0.84;ReadPosRankSum=1.020;SB=-2.652e+00 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,102,1246 0/1:37,6:43:72:72,0,817 0/0:36,2:38:42:0,42,907 0/0:17,0:17:42:0,42,481 +chr3 119120716 . T G 68.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.077;DP=86;Dels=0.02;FS=65.442;HaplotypeScore=3.7920;MLEAC=2;MLEAF=0.250;MQ=31.48;MQ0=0;MQRankSum=-1.737;QD=1.53;ReadPosRankSum=-0.800;SB=-2.836e+00 GT:AD:DP:GQ:PL 0/0:19,2:22:12:0,12,423 0/1:21,4:25:73:73,0,422 0/1:16,3:19:37:37,0,404 0/0:18,0:18:30:0,30,364 +chr3 119196334 rs3732419 G T 1375.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.683;DB;DP=117;Dels=0.00;FS=2.309;HaplotypeScore=1.7247;MLEAC=4;MLEAF=0.500;MQ=40.23;MQ0=0;MQRankSum=-4.560;QD=11.76;ReadPosRankSum=-0.085;SB=-1.550e+02 GT:AD:DP:GQ:PL 0/1:11,15:26:99:527,0,377 0/1:25,9:34:99:264,0,840 0/1:22,13:35:99:424,0,717 0/1:15,7:22:99:203,0,492 +chr3 119211294 rs1997341 A G 506.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.161;DB;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.7672;MLEAC=3;MLEAF=0.375;MQ=37.68;MQ0=0;MQRankSum=-2.416;QD=7.91;ReadPosRankSum=-1.926;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:15,4:19:99:99,0,567 0/1:19,5:24:99:121,0,667 0/1:11,10:21:99:329,0,227 0/0:6,0:6:12:0,12,164 +chr3 119327604 rs150312227 GC G 412.95 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.808;DB;DP=172;FS=2.179;HaplotypeScore=9.7720;MLEAC=1;MLEAF=0.125;MQ=38.40;MQ0=0;MQRankSum=-3.236;QD=10.32;RPA=5,4;RU=C;ReadPosRankSum=-0.062;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:25,15:40:99:458,0,679 0/0:44,0:44:99:0,120,1498 0/0:52,0:50:99:0,126,1573 0/0:32,1:31:81:0,81,1010 +chr3 119328226 . C T 36.43 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.193;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8534;MLEAC=2;MLEAF=0.250;MQ=35.53;MQ0=0;MQRankSum=-4.496;QD=0.96;ReadPosRankSum=0.055;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,6:20:62:62,0,434 0/0:13,1:14:24:0,24,323 0/1:15,3:18:15:15,0,483 0/0:18,1:19:8:0,8,513 +chr3 119748218 . C T 38.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.539;DP=108;Dels=0.01;FS=26.941;HaplotypeScore=2.5805;MLEAC=3;MLEAF=0.375;MQ=21.74;MQ0=0;MQRankSum=1.899;QD=0.56;ReadPosRankSum=0.303;SB=0.344 GT:AD:DP:GQ:PL 0/1:29,2:32:29:29,0,165 0/1:26,2:29:30:30,0,147 0/0:37,0:37:27:0,27,313 0/1:8,1:9:17:23,0,17 +chr3 119904125 rs902791 A G 1051.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.314;DB;DP=108;Dels=0.03;FS=2.861;HaplotypeScore=9.4175;MLEAC=4;MLEAF=0.500;MQ=33.50;MQ0=0;MQRankSum=0.805;QD=9.74;ReadPosRankSum=-0.944;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,8:17:77:273,0,77 0/1:19,12:31:99:333,0,456 0/1:23,9:32:99:270,0,627 0/1:17,8:25:99:218,0,389 +chr3 120764270 . T C 31.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.375;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=13.6813;MLEAC=1;MLEAF=0.125;MQ=24.70;MQ0=0;MQRankSum=0.089;QD=0.60;ReadPosRankSum=-0.519;SB=14.88 GT:AD:DP:GQ:PL 0/0:33,0:36:15:0,15,137 0/0:42,0:45:51:0,51,503 0/1:36,3:40:54:54,0,179 0/1:10,1:13:19:19,0,60 +chr3 121001172 . A T 60.69 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.250;DP=63;Dels=0.00;FS=2.427;HaplotypeScore=7.0714;MLEAC=3;MLEAF=0.375;MQ=32.38;MQ0=0;MQRankSum=-0.150;QD=1.48;ReadPosRankSum=0.718;SB=0.559 GT:AD:DP:GQ:PL 0/0:21,1:22:7:0,7,410 0/1:12,3:15:76:76,0,100 0/1:10,1:11:18:18,0,46 0/1:13,1:15:8:8,0,183 +chr3 121263720 rs702017 C A 3142.17 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.315;DB;DP=94;Dels=0.00;FS=14.221;HaplotypeScore=1.5749;MLEAC=8;MLEAF=1.00;MQ=36.74;MQ0=0;MQRankSum=2.312;QD=33.43;ReadPosRankSum=1.620;SB=-6.432e+02 GT:AD:DP:GQ:PL 1/1:4,25:29:8:838,8,0 1/1:1,25:26:72:964,72,0 1/1:4,24:28:72:958,72,0 1/1:0,11:11:33:421,33,0 +chr3 121386987 . C T 456.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.507;DP=81;Dels=0.01;FS=18.274;HaplotypeScore=9.6938;MLEAC=4;MLEAF=0.500;MQ=29.62;MQ0=0;MQRankSum=-0.662;QD=5.64;ReadPosRankSum=-1.056;SB=0.151 GT:AD:DP:GQ:PL 0/1:14,6:20:87:128,0,87 0/1:16,7:24:51:177,0,51 0/1:16,1:18:22:22,0,97 0/1:10,7:18:43:172,0,43 +chr3 121410981 . T C 74.09 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.321;DP=150;Dels=0.00;FS=98.443;HaplotypeScore=3.1774;MLEAC=3;MLEAF=0.375;MQ=34.07;MQ0=0;MQRankSum=-1.575;QD=0.69;ReadPosRankSum=-1.094;SB=0.312 GT:AD:DP:GQ:PL 0/0:41,2:43:41:0,41,1033 0/1:38,4:42:17:17,0,1035 0/1:44,6:50:92:92,0,1093 0/1:14,1:15:7:7,0,324 +chr3 121774221 . G C 71.54 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.357;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5286;MLEAC=2;MLEAF=0.250;MQ=37.30;MQ0=0;MQRankSum=0.918;QD=1.56;ReadPosRankSum=0.902;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,1:28:8:0,8,549 0/1:23,2:25:14:14,0,422 0/0:29,1:30:23:0,23,547 0/1:17,4:21:98:98,0,344 +chr3 122259423 . G C 78.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.743;DP=69;Dels=0.00;FS=39.170;HaplotypeScore=6.0725;MLEAC=3;MLEAF=0.375;MQ=30.62;MQ0=0;MQRankSum=0.037;QD=1.56;ReadPosRankSum=-0.743;SB=-1.649e+00 GT:AD:DP:GQ:PL 0/1:13,2:16:37:37,0,243 0/0:17,1:19:5:0,5,323 0/1:19,2:21:23:23,0,382 0/1:10,3:13:60:60,0,99 +chr3 122340524 . C A 80.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.453;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=15.4727;MLEAC=3;MLEAF=0.375;MQ=19.69;MQ0=0;MQRankSum=2.076;QD=3.21;ReadPosRankSum=0.104;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,3:11:9:80,9,0 0/0:12,0:12:9:0,9,100 0/1:11,2:13:37:46,0,37 0/0:12,0:12:9:0,9,70 +chr3 122591234 . A C 53.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.314;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0030;MLEAC=2;MLEAF=0.250;MQ=32.43;MQ0=0;MQRankSum=-0.905;QD=0.85;ReadPosRankSum=1.659;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:40,3:43:21:21,0,572 0/0:40,1:41:39:0,39,789 0/0:32,1:34:16:0,16,364 0/1:16,4:20:72:74,0,72 +chr3 122646692 . G C 35.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.002;DP=42;Dels=0.00;FS=13.257;HaplotypeScore=8.2102;MLEAC=2;MLEAF=0.250;MQ=23.48;MQ0=0;MQRankSum=0.390;QD=1.50;ReadPosRankSum=1.669;SB=3.13 GT:AD:DP:GQ:PL 0/1:10,2:13:36:36,0,109 0/0:5,1:6:3:0,3,24 0/1:9,2:11:15:40,0,15 0/0:12,0:12:15:0,15,137 +chr3 122823877 rs895072 C T 76.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=23.91;MQ0=0;MQRankSum=1.231;QD=15.24;ReadPosRankSum=1.231;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6:76,6,0 ./. 1/1:2,1:3:3:34,3,0 +chr3 122942402 rs1546604 G A 1289.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.393;DB;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.2473;MLEAC=3;MLEAF=0.375;MQ=34.86;MQ0=0;MQRankSum=-2.156;QD=13.30;ReadPosRankSum=1.345;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/0:42,0:43:99:0,114,1463 0/1:19,23:42:99:716,0,467 0/1:23,17:42:99:477,0,591 0/1:7,6:13:99:140,0,181 +chr3 122978486 rs9289216 G A 227.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.687;DB;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.6143;MLEAC=2;MLEAF=0.250;MQ=31.83;MQ0=0;MQRankSum=-0.556;QD=7.35;ReadPosRankSum=0.971;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:51:0,51,646 0/1:10,3:13:64:64,0,248 0/1:11,7:18:99:205,0,297 0/0:6,0:6:12:0,12,115 +chr3 123014877 rs9881951 C T 634.64 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.986;DB;DP=49;Dels=0.04;FS=6.851;HaplotypeScore=2.6286;MLEAC=5;MLEAF=0.625;MQ=27.81;MQ0=0;MQRankSum=2.521;QD=12.95;ReadPosRankSum=1.535;SB=-1.181e-02 GT:AD:DP:GQ:PL 1/1:5,7:12:21:242,21,0 0/1:5,3:8:94:97,0,94 0/1:5,5:11:99:160,0,116 0/1:10,6:16:99:181,0,131 +chr3 123049707 rs9829332 G T 748.62 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.264;DB;DP=49;Dels=0.00;FS=2.549;HaplotypeScore=4.0892;MLEAC=5;MLEAF=0.625;MQ=31.54;MQ0=0;MQRankSum=2.901;QD=15.28;ReadPosRankSum=-2.036;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:1,10:11:27:358,27,0 0/1:13,3:16:48:48,0,220 0/1:9,5:14:99:176,0,146 0/1:2,6:8:21:212,0,21 +chr3 123066484 . G T 34.34 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.847;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.8378;MLEAC=3;MLEAF=0.375;MQ=28.85;MQ0=0;MQRankSum=0.212;QD=0.78;ReadPosRankSum=1.270;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:17:17,0,368 0/1:9,1:10:12:12,0,88 0/1:15,2:17:48:48,0,192 0/0:12,0:12:27:0,27,304 +chr3 123345679 . T A 336.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.271;DP=173;Dels=0.00;FS=110.282;HaplotypeScore=3.6407;MLEAC=4;MLEAF=0.500;MQ=38.96;MQ0=0;MQRankSum=-5.187;QD=1.94;ReadPosRankSum=2.063;SB=-4.451e-01 GT:AD:DP:GQ:PL 0/1:37,8:46:99:152,0,1077 0/1:36,3:39:9:9,0,1050 0/1:35,7:42:99:103,0,1063 0/1:38,8:46:99:114,0,1170 +chr3 123378534 rs39639 C G 983.85 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.730;DB;DP=68;Dels=0.03;FS=4.010;HaplotypeScore=1.1797;MLEAC=7;MLEAF=0.875;MQ=28.52;MQ0=0;MQRankSum=1.977;QD=14.47;ReadPosRankSum=1.156;SB=-4.255e+02 GT:AD:DP:GQ:PL 0/1:11,5:16:99:162,0,157 1/1:5,10:15:3:320,3,0 1/1:12,6:19:18:220,18,0 1/1:6,10:16:30:325,30,0 +chr3 123417129 rs56009710 A G 71.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.474;DB;DP=167;Dels=0.01;FS=1.170;HaplotypeScore=1.4228;MLEAC=2;MLEAF=0.250;MQ=12.36;MQ0=0;MQRankSum=1.702;QD=1.84;ReadPosRankSum=-0.445;SB=-3.840e+01 GT:AD:DP:GQ:PL 0/0:41,0:41:18:0,18,187 1/1:27,12:39:9:114,9,0 0/0:46,0:46:9:0,9,80 0/0:40,0:40:6:0,6,63 +chr3 123456432 rs2168439 C T 3877.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.402;DB;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.2224;MLEAC=8;MLEAF=1.00;MQ=35.75;MQ0=0;MQRankSum=1.976;QD=34.62;ReadPosRankSum=2.308;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,24:25:72:948,72,0 1/1:4,26:30:78:1030,78,0 1/1:2,27:29:78:1019,78,0 1/1:3,25:28:75:880,75,0 +chr3 123512627 rs28497577 G T 336.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.855;DB;DP=165;Dels=0.01;FS=1.173;HaplotypeScore=0.4973;MLEAC=1;MLEAF=0.125;MQ=36.00;MQ0=0;MQRankSum=-0.607;QD=10.87;ReadPosRankSum=0.728;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:19,12:31:99:373,0,613 0/0:41,0:41:99:0,120,1519 0/0:50,0:50:99:0,138,1766 0/0:42,0:42:99:0,117,1451 +chr3 123675370 . C A 46.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.714;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7152;MLEAC=3;MLEAF=0.375;MQ=33.71;MQ0=0;MQRankSum=-2.253;QD=0.75;ReadPosRankSum=0.938;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,2:27:17:17,0,487 0/1:18,2:20:22:22,0,320 0/1:13,3:16:49:49,0,274 0/0:3,0:3:3:0,3,26 +chr3 124196094 rs2289843 A T 49.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.068;DB;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.4846;MLEAC=1;MLEAF=0.125;MQ=36.95;MQ0=0;MQRankSum=-2.170;QD=1.67;ReadPosRankSum=-0.159;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,156,1959 0/1:25,5:30:86:86,0,745 0/0:57,0:57:99:0,168,2174 0/0:38,0:38:99:0,111,1413 +chr3 124438439 rs332512 T C 37.91 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.615;DB;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.3670;MLEAC=4;MLEAF=0.500;MQ=28.66;MQ0=0;MQRankSum=-0.168;QD=2.23;ReadPosRankSum=0.056;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:8:8,0,228 0/1:6,1:7:31:31,0,76 1/1:2,1:3:3:40,3,0 0/0:6,0:6:3:0,3,44 +chr3 124449199 . G A 106.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.788;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=3.7948;MLEAC=4;MLEAF=0.500;MQ=26.52;MQ0=0;MQRankSum=0.229;QD=3.45;ReadPosRankSum=0.331;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:19:19,0,130 0/0:8,0:8:3:0,3,26 1/1:5,4:9:9:86,9,0 0/1:8,3:11:46:46,0,53 +chr3 124454174 rs3772804 A G 199.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.299;DB;DP=34;Dels=0.00;FS=2.669;HaplotypeScore=0.2499;MLEAC=4;MLEAF=0.500;MQ=33.08;MQ0=0;MQRankSum=-1.006;QD=8.30;ReadPosRankSum=0.545;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:27:0,27,357 0/1:7,4:11:99:127,0,227 0/1:4,2:7:42:42,0,113 1/1:3,3:6:6:76,6,0 +chr3 124746234 . G A 176.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.494;DP=147;Dels=0.01;FS=93.413;HaplotypeScore=20.8537;MLEAC=3;MLEAF=0.375;MQ=30.91;MQ0=0;MQRankSum=-3.000;QD=1.61;ReadPosRankSum=1.272;SB=-3.477e+00 GT:AD:DP:GQ:PL 0/0:33,4:37:3:0,3,516 0/1:33,4:37:21:21,0,676 0/1:33,8:41:99:103,0,547 0/1:25,5:30:94:94,0,371 +chr3 125166581 . G A 55.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.048;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.3526;MLEAC=2;MLEAF=0.250;MQ=32.49;MQ0=0;MQRankSum=-2.227;QD=1.18;ReadPosRankSum=-0.618;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,4:37:56:56,0,678 0/0:35,1:36:49:0,49,836 0/0:36,0:37:75:0,75,851 0/1:8,2:10:41:41,0,120 +chr3 125466331 rs9757184 A G 310.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.993;DB;DP=287;Dels=0.00;FS=10.406;HaplotypeScore=2.9642;MLEAC=4;MLEAF=0.500;MQ=14.09;MQ0=0;MQRankSum=5.643;QD=1.08;ReadPosRankSum=-3.260;SB=-3.192e+01 GT:AD:DP:GQ:PL 0/1:68,2:70:49:49,0,148 0/1:63,3:66:67:67,0,312 0/1:64,5:69:83:83,0,441 0/1:73,8:81:99:154,0,371 +chr3 126151797 rs35133442 T C 277.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.574;DB;DP=36;Dels=0.00;FS=2.817;HaplotypeScore=2.3292;MLEAC=3;MLEAF=0.375;MQ=29.94;MQ0=0;MQRankSum=-0.281;QD=9.27;ReadPosRankSum=0.767;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:15:0,15,200 0/1:7,2:9:55:55,0,127 0/1:4,6:10:15:165,0,15 0/1:7,4:11:99:101,0,131 +chr3 126193980 . G A 84.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.585;DP=29;Dels=0.03;FS=20.191;HaplotypeScore=0.8798;MLEAC=2;MLEAF=0.250;MQ=29.78;MQ0=0;MQRankSum=-0.548;QD=5.65;ReadPosRankSum=-1.645;SB=-4.718e+00 GT:AD:DP:GQ:PL 0/0:7,0:7:18:0,18,225 0/0:6,0:6:12:0,12,125 0/1:3,3:6:61:74,0,61 0/1:7,2:9:52:52,0,90 +chr3 126216829 rs13098666 T A 298.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.106;DB;DP=80;Dels=0.01;FS=2.571;HaplotypeScore=17.6149;MLEAC=4;MLEAF=0.500;MQ=25.63;MQ0=0;MQRankSum=-0.053;QD=3.73;ReadPosRankSum=1.261;SB=-1.084e+02 GT:AD:DP:GQ:PL 0/1:12,8:21:99:189,0,181 0/1:19,4:24:47:47,0,145 0/1:14,6:20:80:80,0,242 0/1:10,3:14:25:25,0,105 +chr3 126218812 . G A 31.09 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.688;DP=30;Dels=0.03;FS=2.969;HaplotypeScore=9.8396;MLEAC=4;MLEAF=0.500;MQ=14.00;MQ0=0;MQRankSum=0.036;QD=1.24;ReadPosRankSum=1.485;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,59 1/1:3,3:6:3:24,3,0 1/1:5,3:8:3:31,3,0 0/1:8,2:10:19:19,0,44 +chr3 126219030 rs13072404 T C 596.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.408;DB;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.5972;MLEAC=4;MLEAF=0.500;MQ=27.73;MQ0=0;MQRankSum=1.557;QD=9.47;ReadPosRankSum=-1.155;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:86:86,0,134 0/1:12,5:18:99:125,0,212 0/1:10,9:19:99:241,0,130 0/1:10,6:16:99:187,0,126 +chr3 126219048 . C A 410.92 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.554;DP=45;Dels=0.00;FS=9.549;HaplotypeScore=2.5431;MLEAC=5;MLEAF=0.625;MQ=19.52;MQ0=0;MQRankSum=1.662;QD=9.13;ReadPosRankSum=4.154;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,4:8:47:104,0,47 0/1:6,7:13:12:102,0,12 1/1:3,9:12:21:182,21,0 0/1:7,5:12:18:68,0,18 +chr3 126334214 . T A 85.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.362;DP=62;Dels=0.02;FS=56.460;HaplotypeScore=11.5421;MLEAC=3;MLEAF=0.375;MQ=30.41;MQ0=0;MQRankSum=-1.773;QD=2.08;ReadPosRankSum=-0.638;SB=0.625 GT:AD:DP:GQ:PL 0/1:12,2:14:37:37,0,203 0/1:14,5:19:76:76,0,368 0/0:20,1:21:13:0,13,359 0/1:6,1:7:15:15,0,116 +chr3 126390411 rs7638447 T G 143 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.634;DB;DP=68;Dels=0.01;FS=3.019;HaplotypeScore=1.4937;MLEAC=1;MLEAF=0.125;MQ=30.86;MQ0=0;MQRankSum=-1.837;QD=6.50;ReadPosRankSum=-0.254;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,7:22:99:179,0,386 0/0:12,1:13:27:0,27,336 0/0:23,0:23:60:0,60,725 0/0:9,0:9:21:0,21,262 +chr3 126708251 . C A 334.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.924;DP=140;Dels=0.01;FS=55.264;HaplotypeScore=15.1736;MLEAC=4;MLEAF=0.500;MQ=28.32;MQ0=0;MQRankSum=2.192;QD=3.21;ReadPosRankSum=-0.129;SB=-1.678e+00 GT:AD:DP:GQ:PL 0/1:32,3:35:24:24,0,582 0/0:34,2:36:2:0,2,713 0/1:30,5:35:85:85,0,638 0/1:21,11:33:99:266,0,201 +chr3 126940136 . C A 104.94 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.826;DP=32;Dels=0.03;FS=18.921;HaplotypeScore=3.3567;MLEAC=4;MLEAF=0.500;MQ=25.77;MQ0=0;MQRankSum=-1.171;QD=5.00;ReadPosRankSum=-1.733;SB=10.20 GT:AD:DP:GQ:PL 0/1:6,1:7:12:12,0,103 1/1:2,2:4:6:60,6,0 0/1:6,3:9:53:78,0,53 0/0:10,0:11:12:0,12,139 +chr3 127323387 . T A 270.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.078;DP=77;Dels=0.04;FS=0.000;HaplotypeScore=9.1848;MLEAC=4;MLEAF=0.500;MQ=26.30;MQ0=0;MQRankSum=0.577;QD=3.51;ReadPosRankSum=1.346;SB=-1.175e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:38:38,0,137 0/1:14,5:19:84:92,0,84 0/1:19,5:24:99:106,0,302 0/1:15,4:19:66:77,0,66 +chr3 127327619 . C T 109.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.671;DP=181;Dels=0.01;FS=0.000;HaplotypeScore=2.6707;MLEAC=3;MLEAF=0.375;MQ=31.46;MQ0=0;MQRankSum=-1.056;QD=0.85;ReadPosRankSum=1.276;SB=-1.375e-02 GT:AD:DP:GQ:PL 0/0:48,2:50:19:0,19,598 0/1:34,5:39:34:34,0,584 0/1:51,5:57:52:52,0,890 0/1:29,5:34:67:67,0,521 +chr3 127393276 . C T 49.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.696;DP=97;Dels=0.00;FS=10.096;HaplotypeScore=3.2629;MLEAC=3;MLEAF=0.375;MQ=25.10;MQ0=0;MQRankSum=0.971;QD=0.76;ReadPosRankSum=-1.133;SB=-4.990e-01 GT:AD:DP:GQ:PL 0/1:14,2:16:10:10,0,192 0/1:26,3:29:40:40,0,339 0/0:32,0:32:36:0,36,419 0/1:18,2:20:42:42,0,154 +chr3 127407005 rs782445 A T 106 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.731;DB;DP=6;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=26.36;MQ0=0;MQRankSum=0.731;QD=17.67;ReadPosRankSum=0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:39,3,0 1/1:1,1:2:3:40,3,0 1/1:0,1:1:3:35,3,0 1/1:0,1:1:3:28,3,0 +chr3 127441247 . A G 353.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.950;DP=62;Dels=0.00;FS=50.904;HaplotypeScore=3.1330;MLEAC=3;MLEAF=0.375;MQ=28.91;MQ0=0;MQRankSum=-2.256;QD=6.43;ReadPosRankSum=3.313;SB=0.974 GT:AD:DP:GQ:PL 0/1:15,8:24:99:163,0,205 0/1:10,4:14:70:70,0,113 0/1:10,7:17:99:163,0,138 0/0:5,2:7:9:0,9,116 +chr3 127682112 . G T 49.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.568;DP=73;Dels=0.04;FS=39.819;HaplotypeScore=20.9185;MLEAC=4;MLEAF=0.500;MQ=30.60;MQ0=0;MQRankSum=-2.511;QD=0.68;ReadPosRankSum=-1.178;SB=-3.524e+00 GT:AD:DP:GQ:PL 0/1:15,2:18:30:30,0,278 0/1:18,3:22:41:41,0,193 0/1:14,2:16:18:18,0,336 0/1:12,2:14:1:1,0,217 +chr3 128205654 . G T 50.43 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.896;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.4254;MLEAC=5;MLEAF=0.625;MQ=21.02;MQ0=0;MQRankSum=1.398;QD=5.04;ReadPosRankSum=-1.034;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,28 0/1:5,2:7:14:43,0,14 1/1:0,1:1:3:23,3,0 1/1:1,1:2:3:26,3,0 +chr3 128653952 rs883602 A G 115.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.369;DB;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=35.11;MQ0=0;MQRankSum=-1.369;QD=10.52;ReadPosRankSum=0.811;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:71,6,0 0/1:2,1:3:33:33,0,77 0/1:2,2:4:56:56,0,56 0/0:3,1:4:6:0,6,84 +chr3 128889289 . A T 33.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.094;DP=190;Dels=0.00;FS=2.222;HaplotypeScore=4.1166;MLEAC=1;MLEAF=0.125;MQ=27.04;MQ0=0;MQRankSum=-0.322;QD=0.77;ReadPosRankSum=-2.292;SB=-9.840e-03 GT:AD:DP:GQ:PL 0/0:47,1:48:53:0,53,886 0/0:40,0:40:66:0,66,718 0/0:58,0:58:78:0,78,805 0/1:39,5:44:70:70,0,470 +chr3 128889302 . T C 39.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.604;DP=151;Dels=0.03;FS=106.440;HaplotypeScore=16.3739;MLEAC=2;MLEAF=0.250;MQ=28.57;MQ0=0;MQRankSum=-5.981;QD=0.58;ReadPosRankSum=2.183;SB=-1.884e+00 GT:AD:DP:GQ:PL 0/1:24,7:32:41:41,0,559 0/0:23,10:33:3:0,3,546 0/0:38,7:46:41:0,41,748 0/1:28,8:36:39:39,0,476 +chr3 128890647 . A C 34.53 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.066;DP=83;Dels=0.02;FS=0.000;HaplotypeScore=2.0962;MLEAC=2;MLEAF=0.250;MQ=31.21;MQ0=0;MQRankSum=-3.066;QD=0.93;ReadPosRankSum=0.545;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,1:23:42:0,42,548 0/1:15,5:20:68:68,0,389 0/0:21,1:22:10:0,10,401 0/1:15,1:16:4:4,0,250 +chr3 129023554 . G C 33.94 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.129;DP=168;Dels=0.00;FS=90.974;HaplotypeScore=3.3090;MLEAC=2;MLEAF=0.250;MQ=36.38;MQ0=0;MQRankSum=-3.529;QD=0.42;ReadPosRankSum=-0.214;SB=-1.354e+00 GT:AD:DP:GQ:PL 0/0:35,2:37:39:0,39,1147 0/0:46,4:50:22:0,22,1339 0/1:38,6:45:59:59,0,1040 0/1:33,3:36:16:16,0,939 +chr3 129042758 . T G 243.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.805;DP=105;Dels=0.01;FS=158.089;HaplotypeScore=1.9085;MLEAC=4;MLEAF=0.500;MQ=17.30;MQ0=0;MQRankSum=3.046;QD=2.32;ReadPosRankSum=2.323;SB=-1.327e+00 GT:AD:DP:GQ:PL 0/1:15,4:19:23:23,0,52 0/1:27,4:31:56:56,0,210 0/1:21,7:29:78:98,0,78 0/1:20,5:25:35:109,0,35 +chr3 129044006 rs10934882 T C 268.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.347;DB;DP=38;Dels=0.00;FS=5.740;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=26.34;MQ0=0;MQRankSum=0.146;QD=7.06;ReadPosRankSum=-0.503;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,4:10:90:90,0,91 0/1:9,2:11:49:49,0,132 0/1:4,1:5:7:7,0,116 0/1:5,7:12:87:164,0,87 +chr3 129214488 . A T 96.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.486;DP=96;Dels=0.00;FS=2.336;HaplotypeScore=2.9523;MLEAC=3;MLEAF=0.375;MQ=29.59;MQ0=0;MQRankSum=0.613;QD=1.31;ReadPosRankSum=-0.988;SB=-1.108e-01 GT:AD:DP:GQ:PL 0/1:22,2:24:46:46,0,231 0/0:22,0:22:42:0,42,453 0/1:23,2:25:15:15,0,491 0/1:20,5:25:79:79,0,428 +chr3 130159700 . T A 33.53 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.681;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.0648;MLEAC=1;MLEAF=0.125;MQ=35.29;MQ0=0;MQRankSum=-3.313;QD=0.55;ReadPosRankSum=1.125;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:32,2:34:9:0,9,735 0/0:53,1:54:91:0,91,1332 0/1:42,3:45:1:1,0,908 0/1:13,3:16:68:68,0,109 +chr3 130187777 . T A 60.38 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.122;DP=299;Dels=0.02;FS=69.833;HaplotypeScore=11.3944;MLEAC=1;MLEAF=0.125;MQ=31.89;MQ0=0;MQRankSum=-3.132;QD=0.40;ReadPosRankSum=1.663;SB=-6.809e+00 GT:AD:DP:GQ:PL 0/0:67,5:73:15:0,15,1718 0/0:66,5:71:53:0,53,1522 0/1:83,8:91:1:1,0,1633 0/1:50,7:57:95:95,0,873 +chr3 130282425 . G C 329.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.660;DP=309;Dels=0.00;FS=148.269;HaplotypeScore=18.7632;MLEAC=4;MLEAF=0.500;MQ=28.16;MQ0=0;MQRankSum=-2.835;QD=1.07;ReadPosRankSum=3.319;SB=-1.247e-02 GT:AD:DP:GQ:PL 0/1:73,9:82:41:41,0,1373 0/1:62,17:79:99:210,0,1202 0/1:76,11:88:81:81,0,1409 0/1:54,5:59:40:40,0,1085 +chr3 130393973 rs7635293 T A 177.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.315;DB;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8967;MLEAC=3;MLEAF=0.375;MQ=31.56;MQ0=0;MQRankSum=1.112;QD=3.56;ReadPosRankSum=1.958;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:99:103,0,427 0/0:24,0:24:63:0,63,767 0/1:19,4:23:95:95,0,437 0/1:4,1:5:23:23,0,59 +chr3 130463739 . G A 60.71 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.738;DP=211;Dels=0.00;FS=22.391;HaplotypeScore=2.4737;MLEAC=1;MLEAF=0.125;MQ=40.99;MQ0=0;MQRankSum=-3.546;QD=1.48;ReadPosRankSum=-0.801;SB=-5.992e+00 GT:AD:DP:GQ:PL 0/0:48,2:50:51:0,51,1348 0/0:56,2:58:90:0,90,1896 0/0:57,5:62:2:0,2,1729 0/1:36,5:41:96:96,0,744 +chr3 130688134 . A T 119.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.754;DP=85;Dels=0.00;FS=2.335;HaplotypeScore=2.9944;MLEAC=4;MLEAF=0.500;MQ=30.87;MQ0=0;MQRankSum=-2.401;QD=1.41;ReadPosRankSum=1.985;SB=-1.404e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:35:35,0,505 0/1:19,3:22:44:44,0,398 0/1:30,5:35:51:51,0,725 0/1:5,2:7:32:32,0,90 +chr3 131271266 . T A 66.28 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.310;DP=101;Dels=0.00;FS=42.212;HaplotypeScore=2.3018;MLEAC=2;MLEAF=0.250;MQ=35.47;MQ0=0;MQRankSum=-2.637;QD=1.74;ReadPosRankSum=0.515;SB=-2.468e+00 GT:AD:DP:GQ:PL 0/0:30,0:30:78:0,78,1013 0/1:26,5:31:93:93,0,749 0/0:30,3:33:12:0,12,980 0/1:6,1:7:14:14,0,155 +chr3 131283151 . T C 85.11 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.944;DP=102;Dels=0.05;FS=16.555;HaplotypeScore=22.8765;MLEAC=4;MLEAF=0.500;MQ=26.18;MQ0=0;MQRankSum=-1.710;QD=0.83;ReadPosRankSum=1.756;SB=-7.131e-01 GT:AD:DP:GQ:PL 0/1:17,4:21:50:50,0,221 0/1:27,2:29:26:26,0,335 0/1:24,2:28:3:3,0,220 0/1:16,3:19:47:47,0,162 +chr3 131442819 . T G 54.30 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.406;DP=7;Dels=0.00;FS=10.000;HaplotypeScore=0.2217;MLEAC=4;MLEAF=0.667;MQ=26.83;MQ0=0;MQRankSum=0.988;QD=9.05;ReadPosRankSum=-0.406;SB=3.94 GT:AD:DP:GQ:PL 1/1:0,1:1:3:25,3,0 0/1:1,1:2:25:32,0,25 0/1:2,1:3:31:36,0,31 ./. +chr3 132203417 . G C 52.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.764;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=5.7364;MLEAC=3;MLEAF=0.375;MQ=29.78;MQ0=0;MQRankSum=-3.068;QD=0.44;ReadPosRankSum=3.167;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:31,1:33:54:0,54,657 0/1:41,6:49:83:83,0,459 0/1:49,2:55:2:2,0,637 0/1:12,1:13:5:5,0,174 +chr3 132244406 rs754993 G A 4608.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.701;DB;DP=134;Dels=0.00;FS=45.229;HaplotypeScore=0.9777;MLEAC=8;MLEAF=1.00;MQ=35.71;MQ0=0;MQRankSum=2.734;QD=34.39;ReadPosRankSum=0.564;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,30:34:87:1142,87,0 1/1:2,36:38:99:1360,108,0 1/1:4,35:39:99:1380,105,0 1/1:2,21:23:60:726,60,0 +chr3 132401421 rs6792074 G A 799.61 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.538;DB;DP=41;Dels=0.00;FS=4.559;HaplotypeScore=0.3325;MLEAC=5;MLEAF=0.625;MQ=33.06;MQ0=0;MQRankSum=-0.581;QD=19.50;ReadPosRankSum=0.213;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,8:9:24:305,24,0 0/1:8,7:15:99:213,0,204 0/1:3,7:10:99:205,0,99 0/1:3,4:7:84:122,0,84 +chr3 132409455 rs16839515 C T 403.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.627;DB;DP=173;Dels=0.01;FS=1.061;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.125;MQ=38.04;MQ0=0;MQRankSum=-0.387;QD=8.42;ReadPosRankSum=2.511;SB=-1.860e+02 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,138,1829 0/1:33,14:47:99:440,0,1124 0/0:59,0:59:99:0,165,2124 0/0:17,0:17:45:0,45,582 +chr3 132415515 . G A 35.37 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.676;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=3.8460;MLEAC=1;MLEAF=0.125;MQ=31.94;MQ0=0;MQRankSum=1.676;QD=1.01;ReadPosRankSum=-1.097;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:39,0:39:75:0,75,883 0/0:41,2:43:5:0,5,543 0/0:34,0:34:75:0,75,913 0/1:30,4:34:71:71,0,514 +chr3 133185587 . G C 506.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.217;DP=55;Dels=0.00;FS=9.670;HaplotypeScore=2.8527;MLEAC=4;MLEAF=0.500;MQ=32.56;MQ0=0;MQRankSum=0.650;QD=9.21;ReadPosRankSum=0.813;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,5:12:17:144,0,17 0/1:9,4:13:83:113,0,83 0/1:15,5:20:99:151,0,152 0/1:5,5:10:44:141,0,44 +chr3 133330044 . T A 98.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.050;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=11.3598;MLEAC=2;MLEAF=0.250;MQ=30.69;MQ0=0;MQRankSum=-2.141;QD=2.19;ReadPosRankSum=2.488;SB=-1.088e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:39:39,0,262 0/1:18,5:23:99:101,0,347 0/0:26,1:27:32:0,32,715 0/0:11,0:11:12:0,12,126 +chr3 133375654 . T G 105.41 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.853;DP=381;Dels=0.00;FS=121.459;HaplotypeScore=6.3764;MLEAC=2;MLEAF=0.250;MQ=35.51;MQ0=0;MQRankSum=-4.273;QD=0.71;ReadPosRankSum=2.128;SB=-2.836e+00 GT:AD:DP:GQ:PL 0/0:115,11:126:1:0,1,3381 0/0:100,7:107:26:0,26,2523 0/1:98,12:111:79:79,0,2730 0/1:32,5:37:66:66,0,795 +chr3 133428433 . C T 99.28 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.054;DP=29;Dels=0.03;FS=6.317;HaplotypeScore=1.8727;MLEAC=4;MLEAF=0.500;MQ=24.08;MQ0=0;MQRankSum=1.356;QD=5.84;ReadPosRankSum=0.813;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:19:43,0,19 0/1:2,3:5:25:76,0,25 0/0:12,0:12:6:0,6,55 1/1:5,1:6:3:23,3,0 +chr3 133698349 rs10935090 C T 2252.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.792;DB;DP=255;Dels=0.00;FS=15.014;HaplotypeScore=0.7366;MLEAC=3;MLEAF=0.375;MQ=37.52;MQ0=0;MQRankSum=-8.499;QD=11.61;ReadPosRankSum=0.717;SB=-3.160e+02 GT:AD:DP:GQ:PL 0/1:40,29:69:99:866,0,1407 0/0:61,0:61:99:0,172,2302 0/1:36,25:61:99:652,0,1297 0/1:38,26:64:99:778,0,1145 +chr3 134078952 . T A 90.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.430;DP=50;Dels=0.00;FS=46.494;HaplotypeScore=1.8207;MLEAC=2;MLEAF=0.250;MQ=36.81;MQ0=0;MQRankSum=-2.299;QD=3.77;ReadPosRankSum=-0.212;SB=4.55 GT:AD:DP:GQ:PL 0/0:9,0:9:27:0,27,348 0/1:8,2:10:38:38,0,214 0/0:17,0:17:45:0,45,563 0/1:10,4:14:94:94,0,290 +chr3 134079204 . G C 174.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.445;DP=94;Dels=0.00;FS=119.651;HaplotypeScore=3.8429;MLEAC=4;MLEAF=0.500;MQ=31.07;MQ0=0;MQRankSum=-2.390;QD=2.39;ReadPosRankSum=-0.687;SB=-4.697e+00 GT:AD:DP:GQ:PL 0/1:20,6:26:99:143,0,488 0/1:23,2:25:29:29,0,344 0/1:17,5:22:43:43,0,461 0/0:16,4:21:1:0,1,444 +chr3 134670836 . T C 96.18 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.077;DP=282;Dels=0.00;FS=65.624;HaplotypeScore=2.4348;MLEAC=1;MLEAF=0.125;MQ=35.25;MQ0=0;MQRankSum=-3.917;QD=1.32;ReadPosRankSum=2.101;SB=-6.026e+00 GT:AD:DP:GQ:PL 0/0:61,6:67:8:0,8,1831 0/0:71,3:74:86:0,86,1994 0/0:64,4:68:50:0,50,1793 0/1:61,11:72:99:132,0,1771 +chr3 135759669 rs3832193 T TG 668.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.354;DB;DP=56;FS=0.000;HaplotypeScore=4.3296;MLEAC=3;MLEAF=0.375;MQ=39.21;MQ0=0;MQRankSum=-2.462;QD=13.93;RPA=2,3;RU=G;ReadPosRankSum=1.511;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:8,0:8:24:0,24,325 0/1:10,8:18:99:271,0,353 0/1:15,5:18:99:152,0,437 0/1:2,8:10:14:298,0,14 +chr3 136012687 . G C 232.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.485;DP=135;Dels=0.02;FS=17.578;HaplotypeScore=12.8963;MLEAC=4;MLEAF=0.500;MQ=31.28;MQ0=0;MQRankSum=-5.386;QD=1.72;ReadPosRankSum=0.604;SB=-1.190e-02 GT:AD:DP:GQ:PL 0/1:24,6:30:60:60,0,627 0/1:30,7:37:74:74,0,550 0/1:24,9:33:97:97,0,590 0/1:25,7:32:44:44,0,428 +chr3 136141553 . A C 79.24 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.380;DP=57;Dels=0.00;FS=10.937;HaplotypeScore=2.3201;MLEAC=2;MLEAF=0.333;MQ=31.30;MQ0=0;MQRankSum=-1.701;QD=2.14;ReadPosRankSum=0.321;SB=-7.212e-01 GT:AD:DP:GQ:PL 0/0:17,1:18:6:0,6,397 0/1:15,2:17:37:37,0,284 0/1:16,4:20:80:80,0,214 ./. +chr3 136728886 rs361235 G T 156.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.751;DB;DP=80;Dels=0.03;FS=4.112;HaplotypeScore=1.4598;MLEAC=3;MLEAF=0.375;MQ=26.91;MQ0=0;MQRankSum=-1.385;QD=2.65;ReadPosRankSum=0.808;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,7:24:99:104,0,278 0/1:15,4:19:70:70,0,374 0/0:19,2:21:10:0,10,471 0/1:11,3:14:25:25,0,232 +chr3 137783329 . G A 69.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.491;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=4.1865;MLEAC=2;MLEAF=0.250;MQ=29.14;MQ0=0;MQRankSum=0.614;QD=1.74;ReadPosRankSum=0.754;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,1:29:11:0,11,343 0/1:18,3:21:45:45,0,321 0/0:30,2:32:1:0,1,501 0/1:15,3:19:64:64,0,96 +chr3 137885926 . A G 89.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.265;DP=89;Dels=0.02;FS=0.000;HaplotypeScore=11.5498;MLEAC=3;MLEAF=0.375;MQ=24.80;MQ0=0;MQRankSum=-2.857;QD=1.31;ReadPosRankSum=2.966;SB=0.028 GT:AD:DP:GQ:PL 0/0:20,1:21:21:0,21,222 0/1:25,3:29:33:33,0,299 0/1:16,7:24:84:84,0,99 0/1:11,2:13:15:15,0,71 +chr3 138180971 . C A 121.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.434;DP=140;Dels=0.01;FS=100.435;HaplotypeScore=6.7785;MLEAC=2;MLEAF=0.250;MQ=31.11;MQ0=0;MQRankSum=-2.606;QD=1.99;ReadPosRankSum=0.779;SB=-3.391e+00 GT:AD:DP:GQ:PL 0/1:22,6:28:98:98,0,472 0/0:33,2:35:29:0,29,851 0/0:42,2:44:39:0,39,915 0/1:26,6:32:65:65,0,563 +chr3 138181137 . T G 46.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.491;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.4266;MLEAC=3;MLEAF=0.375;MQ=39.32;MQ0=0;MQRankSum=-1.221;QD=1.03;ReadPosRankSum=0.632;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,1:15:5:0,5,399 0/1:11,2:13:41:41,0,299 0/1:16,2:18:26:26,0,413 0/1:13,1:14:21:21,0,194 +chr3 138403658 . T G 49.23 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.709;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.7533;MLEAC=1;MLEAF=0.125;MQ=30.62;MQ0=0;MQRankSum=-1.110;QD=2.34;ReadPosRankSum=2.889;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/0:35,0:35:81:0,81,895 0/0:23,1:24:7:0,7,385 0/0:36,0:36:48:0,48,614 0/1:17,4:21:85:85,0,198 +chr3 138815489 . T G 38.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=21.81;MQ0=0;MQRankSum=0.736;QD=9.50;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:32,3,0 1/1:1,1:2:3:39,3,0 ./. +chr3 139088481 rs11717119 T C 42.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.636;DB;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.5910;MLEAC=2;MLEAF=0.250;MQ=25.59;MQ0=0;MQRankSum=0.122;QD=3.88;ReadPosRankSum=-0.365;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:9:0,9,116 0/1:7,3:10:60:60,0,171 0/0:4,0:4:9:0,9,87 1/1:0,1:1:3:25,3,0 +chr3 139098357 rs9831108 A C 201.14 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.565;DB;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=2.9194;MLEAC=1;MLEAF=0.125;MQ=37.35;MQ0=0;MQRankSum=-3.232;QD=6.29;ReadPosRankSum=0.212;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,0:28:81:0,81,1068 0/1:21,10:31:99:237,0,697 0/0:33,0:33:93:0,93,1243 0/0:5,0:5:9:0,9,105 +chr3 139171924 . G T 91.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.940;DP=75;Dels=0.00;FS=9.896;HaplotypeScore=5.2674;MLEAC=4;MLEAF=0.500;MQ=30.51;MQ0=0;MQRankSum=-0.420;QD=1.22;ReadPosRankSum=-2.942;SB=-4.406e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:21:21,0,433 0/1:14,2:16:34:34,0,281 0/1:19,3:22:29:29,0,437 0/1:16,3:19:50:50,0,341 +chr3 139257897 . T G 49.19 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.578;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3487;MLEAC=1;MLEAF=0.125;MQ=30.08;MQ0=0;MQRankSum=-1.227;QD=2.73;ReadPosRankSum=-0.945;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:39:0,39,428 0/0:20,0:20:27:0,27,301 0/0:10,1:11:8:0,8,314 0/1:14,4:18:85:85,0,301 +chr3 140123396 . C A 333.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.611;DP=158;Dels=0.00;FS=9.187;HaplotypeScore=3.7556;MLEAC=4;MLEAF=0.500;MQ=32.17;MQ0=0;MQRankSum=-2.147;QD=2.11;ReadPosRankSum=1.645;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:36,6:42:99:111,0,673 0/1:31,6:37:92:92,0,534 0/1:38,5:43:62:62,0,819 0/1:29,7:36:99:111,0,480 +chr3 140185294 rs533657 G A 197.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.235;DB;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9150;MLEAC=1;MLEAF=0.125;MQ=39.78;MQ0=0;MQRankSum=-0.849;QD=14.07;ReadPosRankSum=-0.468;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,7:14:99:233,0,239 0/0:14,0:14:30:0,30,379 0/0:9,0:9:27:0,27,354 0/0:5,0:5:15:0,15,213 +chr3 140281101 . C T 508.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.207;DP=114;Dels=0.00;FS=157.459;HaplotypeScore=14.5852;MLEAC=4;MLEAF=0.500;MQ=30.75;MQ0=0;MQRankSum=-2.982;QD=4.46;ReadPosRankSum=2.302;SB=1.09 GT:AD:DP:GQ:PL 0/1:18,7:25:99:156,0,232 0/1:21,9:30:99:164,0,393 0/1:20,10:30:99:204,0,535 0/1:24,4:29:27:27,0,486 +chr3 141163441 . C T 31.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.494;DP=120;Dels=0.05;FS=96.775;HaplotypeScore=29.3560;MLEAC=2;MLEAF=0.250;MQ=25.18;MQ0=0;MQRankSum=-1.877;QD=0.57;ReadPosRankSum=1.520;SB=-5.013e+00 GT:AD:DP:GQ:PL 0/0:22,2:24:5:0,5,323 0/1:21,4:25:48:48,0,327 0/0:33,5:38:3:0,3,550 0/1:21,5:27:23:23,0,354 +chr3 141327474 rs295323 G A 674.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.776;DB;DP=210;Dels=0.02;FS=4.031;HaplotypeScore=2.8631;MLEAC=2;MLEAF=0.250;MQ=40.00;MQ0=0;MQRankSum=-1.183;QD=6.88;ReadPosRankSum=-0.096;SB=-2.070e+02 GT:AD:DP:GQ:PL 0/1:34,11:45:99:327,0,1181 0/1:34,14:48:99:389,0,1140 0/0:67,0:67:99:0,199,2675 0/0:45,0:45:99:0,129,1619 +chr3 142746091 . T G 82.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.192;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=5.8588;MLEAC=2;MLEAF=0.250;MQ=33.42;MQ0=0;MQRankSum=-4.470;QD=0.94;ReadPosRankSum=1.671;SB=-1.556e-01 GT:AD:DP:GQ:PL 0/0:65,2:67:98:0,98,1824 0/1:59,7:66:17:17,0,1534 0/0:67,1:68:99:0,106,1520 0/1:15,7:22:99:107,0,347 +chr3 142774058 . T A 31.26 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.118;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=3;MLEAF=0.750;MQ=16.22;MQ0=0;MQRankSum=2.003;QD=3.47;ReadPosRankSum=-1.061;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,32 1/1:7,2:9:6:66,6,0 ./. ./. +chr3 142840327 . T A 455.84 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.082;DP=77;Dels=0.00;FS=1.641;HaplotypeScore=1.9187;MLEAC=5;MLEAF=0.625;MQ=29.02;MQ0=0;MQRankSum=0.262;QD=5.92;ReadPosRankSum=1.609;SB=-2.676e+01 GT:AD:DP:GQ:PL 0/1:14,6:20:99:119,0,137 0/1:11,5:16:99:119,0,113 0/1:20,6:26:99:108,0,211 1/1:9,6:15:15:155,15,0 +chr3 145795761 . C A 163.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.375;DP=328;Dels=0.01;FS=0.000;HaplotypeScore=5.8636;MLEAC=3;MLEAF=0.375;MQ=29.09;MQ0=0;MQRankSum=-0.763;QD=0.75;ReadPosRankSum=3.291;SB=-9.390e-03 GT:AD:DP:GQ:PL 0/1:80,6:86:29:29,0,1115 0/0:104,6:110:29:0,29,1915 0/1:94,11:105:99:123,0,1277 0/1:20,4:24:55:55,0,328 +chr3 145824478 rs9289716 A G 1196.84 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.047;DB;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.4953;MLEAC=5;MLEAF=0.625;MQ=36.47;MQ0=0;MQRankSum=-2.995;QD=16.17;ReadPosRankSum=0.942;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,18:19:15:666,15,0 0/1:14,10:24:99:299,0,362 0/1:19,9:28:99:242,0,651 0/1:2,1:3:35:35,0,74 +chr3 145938696 . G T 237.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.222;DP=95;Dels=0.00;FS=15.267;HaplotypeScore=7.1206;MLEAC=4;MLEAF=0.500;MQ=30.77;MQ0=0;MQRankSum=-4.415;QD=2.50;ReadPosRankSum=-0.464;SB=-2.453e-02 GT:AD:DP:GQ:PL 0/1:20,5:25:96:96,0,576 0/1:20,6:26:99:117,0,357 0/1:23,2:25:24:24,0,419 0/1:15,4:19:43:43,0,294 +chr3 146311967 . C A 37.52 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.393;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=7.3700;MLEAC=2;MLEAF=0.250;MQ=26.05;MQ0=0;MQRankSum=-2.774;QD=1.10;ReadPosRankSum=3.750;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,1:21:21:0,21,277 0/1:19,6:25:56:56,0,190 0/0:21,2:24:1:0,1,275 0/1:6,3:9:21:21,0,68 +chr3 147108922 . T A 57.74 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.562;DP=87;Dels=0.00;FS=33.028;HaplotypeScore=2.5221;MLEAC=3;MLEAF=0.375;MQ=32.36;MQ0=0;MQRankSum=-2.745;QD=0.86;ReadPosRankSum=-1.803;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:15,1:16:2:2,0,313 0/0:19,1:20:19:0,19,441 0/1:22,4:26:61:61,0,414 0/1:21,3:25:35:35,0,292 +chr3 147113924 . C T 205.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.228;DP=69;Dels=0.00;FS=31.089;HaplotypeScore=2.5783;MLEAC=4;MLEAF=0.500;MQ=25.00;MQ0=0;MQRankSum=-0.445;QD=2.98;ReadPosRankSum=3.655;SB=-1.326e+00 GT:AD:DP:GQ:PL 0/1:10,6:16:99:143,0,159 0/1:10,4:14:34:34,0,70 0/1:21,3:24:32:32,0,299 0/1:13,2:15:15:39,0,15 +chr3 148757889 . C A 145.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.751;DP=131;Dels=0.00;FS=64.825;HaplotypeScore=4.0577;MLEAC=4;MLEAF=0.500;MQ=32.76;MQ0=0;MQRankSum=-3.244;QD=1.11;ReadPosRankSum=0.487;SB=-1.896e-01 GT:AD:DP:GQ:PL 0/1:26,4:30:13:13,0,739 0/1:30,8:38:67:67,0,838 0/1:44,6:51:64:64,0,1167 0/1:10,2:12:44:44,0,165 +chr3 148847569 . T G 37.46 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.063;DP=19;Dels=0.00;FS=6.422;HaplotypeScore=0.4293;MLEAC=1;MLEAF=0.125;MQ=28.00;MQ0=0;MQRankSum=0.063;QD=3.75;ReadPosRankSum=-0.063;SB=1.09 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,32 0/0:7,0:7:9:0,9,93 0/0:1,0:1:3:0,3,42 0/1:7,3:10:65:72,0,65 +chr3 148879883 rs57943258 A G 452.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.043;DB;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=3.4638;MLEAC=3;MLEAF=0.375;MQ=35.57;MQ0=0;MQRankSum=-3.063;QD=12.94;ReadPosRankSum=1.092;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:54:0,54,702 0/1:7,4:11:99:126,0,256 0/1:5,7:12:99:204,0,149 0/1:5,6:11:99:166,0,120 +chr3 150280445 rs1132979 C G 615.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.638;DB;DP=147;Dels=0.01;FS=0.904;HaplotypeScore=15.4031;MLEAC=3;MLEAF=0.375;MQ=29.88;MQ0=0;MQRankSum=-0.225;QD=5.50;ReadPosRankSum=1.363;SB=-2.090e+02 GT:AD:DP:GQ:PL 0/1:27,11:40:99:284,0,420 0/0:33,0:34:60:0,60,722 0/1:33,15:52:99:370,0,503 0/1:18,1:20:2:2,0,296 +chr3 150403805 . T C 514.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.899;DP=164;Dels=0.00;FS=4.956;HaplotypeScore=4.2887;MLEAC=4;MLEAF=0.500;MQ=26.12;MQ0=0;MQRankSum=-1.204;QD=3.14;ReadPosRankSum=3.425;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:36,8:44:85:85,0,400 0/1:44,9:54:99:163,0,627 0/1:34,13:48:99:225,0,445 0/1:14,4:18:84:84,0,137 +chr3 150659372 . A C 176.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.521;DP=75;Dels=0.00;FS=19.998;HaplotypeScore=5.1189;MLEAC=4;MLEAF=0.500;MQ=31.63;MQ0=0;MQRankSum=-0.944;QD=2.35;ReadPosRankSum=2.298;SB=-2.658e-02 GT:AD:DP:GQ:PL 0/1:13,3:17:70:70,0,159 0/1:18,4:22:57:57,0,318 0/1:22,4:28:70:70,0,419 0/1:7,1:8:22:22,0,73 +chr3 151012054 . T G 552.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.251;DP=237;Dels=0.00;FS=70.266;HaplotypeScore=1.4564;MLEAC=4;MLEAF=0.500;MQ=32.72;MQ0=0;MQRankSum=-1.569;QD=2.33;ReadPosRankSum=5.842;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:70,8:78:83:83,0,1498 0/1:72,9:81:72:72,0,1613 0/1:43,15:58:99:306,0,764 0/1:14,6:20:99:134,0,264 +chr3 151163994 . C T 49.34 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.773;DP=125;Dels=0.00;FS=57.511;HaplotypeScore=9.2379;MLEAC=2;MLEAF=0.250;MQ=30.93;MQ0=0;MQRankSum=-3.462;QD=0.78;ReadPosRankSum=2.012;SB=-1.705e+00 GT:AD:DP:GQ:PL 0/1:20,3:23:24:24,0,331 0/0:39,3:42:10:0,10,735 0/1:33,7:40:66:66,0,633 0/0:19,1:20:8:0,8,412 +chr3 152553974 . C G 35.51 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.623;DP=90;Dels=0.02;FS=26.600;HaplotypeScore=23.1542;MLEAC=3;MLEAF=0.375;MQ=31.32;MQ0=0;MQRankSum=-1.790;QD=0.57;ReadPosRankSum=-0.406;SB=-2.872e+00 GT:AD:DP:GQ:PL 0/1:17,3:21:34:34,0,320 0/0:25,1:27:11:0,11,527 0/1:19,1:21:1:1,0,349 0/1:17,2:19:40:40,0,265 +chr3 154866545 rs1436632 A C 369.27 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.140;DB;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9772;MLEAC=2;MLEAF=0.333;MQ=31.22;MQ0=0;MQRankSum=-1.487;QD=11.54;ReadPosRankSum=1.487;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,11:17:78:304,0,78 0/1:11,4:15:99:104,0,296 0/0:10,0:10:27:0,27,326 ./. +chr3 154898181 rs181669571 T C 1101.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.738;DB;DP=184;Dels=0.01;FS=123.611;HaplotypeScore=29.7097;MLEAC=4;MLEAF=0.500;MQ=24.29;MQ0=0;MQRankSum=3.781;QD=5.99;ReadPosRankSum=1.339;SB=-2.887e+00 GT:AD:DP:GQ:PL 0/1:27,17:44:88:409,0,88 0/1:41,12:53:99:284,0,328 0/1:41,12:55:99:311,0,203 0/1:24,7:31:99:140,0,162 +chr3 155210509 . G A 226.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.257;DP=99;Dels=0.00;FS=17.368;HaplotypeScore=11.3801;MLEAC=4;MLEAF=0.500;MQ=32.34;MQ0=0;MQRankSum=-1.682;QD=2.29;ReadPosRankSum=3.337;SB=-9.560e-01 GT:AD:DP:GQ:PL 0/1:20,6:26:85:85,0,384 0/1:19,5:24:80:80,0,407 0/1:27,2:29:5:5,0,461 0/1:15,5:20:98:98,0,219 +chr3 155893884 rs7625226 A G 376.78 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.910;DB;DP=84;Dels=0.01;FS=0.880;HaplotypeScore=3.0743;MLEAC=4;MLEAF=0.500;MQ=19.99;MQ0=0;MQRankSum=0.931;QD=5.71;ReadPosRankSum=0.984;SB=-1.986e+02 GT:AD:DP:GQ:PL 0/0:18,0:18:18:0,18,201 1/1:4,14:18:24:253,24,0 0/1:16,12:28:23:148,0,23 0/1:13,6:19:24:24,0,167 +chr3 156396285 . C T 457.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.923;DP=186;Dels=0.00;FS=92.086;HaplotypeScore=3.2340;MLEAC=4;MLEAF=0.500;MQ=36.41;MQ0=0;MQRankSum=-2.537;QD=2.46;ReadPosRankSum=2.853;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,8:43:99:154,0,959 0/1:50,8:58:99:152,0,1167 0/1:46,7:54:92:92,0,1386 0/1:25,5:31:99:102,0,584 +chr3 156422945 . T A 174.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.315;DP=87;Dels=0.00;FS=9.816;HaplotypeScore=0.2495;MLEAC=3;MLEAF=0.375;MQ=32.11;MQ0=0;MQRankSum=-0.714;QD=2.97;ReadPosRankSum=3.092;SB=-3.698e-01 GT:AD:DP:GQ:PL 0/1:18,6:24:99:153,0,256 0/1:23,5:28:56:56,0,468 0/0:27,1:28:6:0,6,404 0/1:6,1:7:7:7,0,121 +chr3 156544584 rs344071 C T 1910.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.053;DB;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9490;MLEAC=4;MLEAF=0.500;MQ=37.29;MQ0=0;MQRankSum=-0.473;QD=12.09;ReadPosRankSum=0.613;SB=-4.810e+02 GT:AD:DP:GQ:PL 0/1:17,16:33:99:557,0,472 0/1:28,15:43:99:474,0,815 0/1:30,15:45:99:445,0,1045 0/1:22,15:37:99:477,0,663 +chr3 156763291 . G C 189.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.967;DP=197;Dels=0.02;FS=42.932;HaplotypeScore=17.9102;MLEAC=1;MLEAF=0.125;MQ=29.74;MQ0=0;MQRankSum=0.715;QD=3.52;ReadPosRankSum=-0.518;SB=0.926 GT:AD:DP:GQ:PL 0/0:38,1:39:37:0,37,642 0/1:40,11:52:99:226,0,632 0/0:57,0:57:99:0,105,1126 0/0:43,1:45:51:0,51,804 +chr3 157098830 rs11918443 C T 216.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.687;DB;DP=41;Dels=0.05;FS=0.000;HaplotypeScore=1.2316;MLEAC=2;MLEAF=0.250;MQ=35.62;MQ0=0;MQRankSum=-2.232;QD=8.33;ReadPosRankSum=-0.858;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,5:13:99:152,0,225 0/0:9,0:9:27:0,27,365 0/0:6,0:6:15:0,15,213 0/1:7,4:11:99:106,0,199 +chr3 158373550 rs73028934 T C 608.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.999;DB;DP=285;Dels=0.00;FS=0.000;HaplotypeScore=0.9826;MLEAC=3;MLEAF=0.375;MQ=27.78;MQ0=0;MQRankSum=-6.865;QD=3.14;ReadPosRankSum=0.901;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:91,0:91:99:0,243,2593 0/1:52,34:86:99:386,0,1144 0/1:59,24:83:99:187,0,1615 0/1:17,8:25:79:79,0,317 +chr3 158970514 . A G 47.90 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.846;DP=94;Dels=0.00;FS=4.631;HaplotypeScore=2.1735;MLEAC=1;MLEAF=0.125;MQ=35.45;MQ0=0;MQRankSum=-2.987;QD=4.79;ReadPosRankSum=-0.876;SB=-3.832e+00 GT:AD:DP:GQ:PL 0/0:27,2:29:6:0,6,716 0/0:26,2:28:4:0,4,644 0/0:25,2:27:12:0,12,586 0/1:7,3:10:83:83,0,168 +chr3 160130110 rs2305407 G A 886.04 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.199;DB;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=2.3897;MLEAC=7;MLEAF=0.875;MQ=24.66;MQ0=0;MQRankSum=1.967;QD=15.28;ReadPosRankSum=0.069;SB=-3.805e+02 GT:AD:DP:GQ:PL 1/1:6,10:16:21:217,21,0 0/1:4,8:12:12:213,0,12 1/1:9,15:24:39:439,39,0 1/1:3,2:5:6:60,6,0 +chr3 160141146 . TG T 137.10 . AC=6;AF=1.00;AN=6;BaseQRankSum=-0.742;DP=55;FS=0.000;HaplotypeScore=3.2425;MLEAC=6;MLEAF=1.00;MQ=11.54;MQ0=0;MQRankSum=0.742;QD=2.80;ReadPosRankSum=-0.742;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:7,3:3:6:60,6,0 1/1:16,5:4:6:94,6,0 1/1:11,6:2:3:28,3,0 ./. +chr3 161043633 . T G 51.90 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.619;DP=122;Dels=0.00;FS=4.536;HaplotypeScore=0.2167;MLEAC=4;MLEAF=0.500;MQ=31.65;MQ0=0;MQRankSum=2.030;QD=0.43;ReadPosRankSum=2.287;SB=-2.535e-01 GT:AD:DP:GQ:PL 0/1:25,3:28:35:35,0,403 0/1:32,2:34:27:27,0,412 0/1:24,2:26:21:21,0,400 0/1:32,2:34:11:11,0,482 +chr3 161090322 rs62279928 A G 135.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.593;DB;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=5.0990;MLEAC=3;MLEAF=0.375;MQ=21.22;MQ0=0;MQRankSum=1.347;QD=5.42;ReadPosRankSum=3.126;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:9:0,9,97 0/1:3,3:6:21:48,0,21 0/1:3,4:8:21:110,0,21 0/1:9,2:11:20:20,0,75 +chr3 163373192 rs1318896 T C 41.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=6;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=19.87;MQ0=0;MQRankSum=0.736;QD=10.25;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:41,3,0 1/1:1,1:2:3:33,3,0 ./. +chr3 164700906 . A T 58.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.722;DP=89;Dels=0.02;FS=0.000;HaplotypeScore=1.2083;MLEAC=3;MLEAF=0.375;MQ=34.56;MQ0=0;MQRankSum=-3.242;QD=1.00;ReadPosRankSum=2.958;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,3:23:36:36,0,591 0/1:22,5:27:49:49,0,501 0/0:28,1:29:49:0,49,855 0/1:6,2:8:17:17,0,164 +chr3 164733721 rs2290738 G A 2478.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.531;DB;DP=282;Dels=0.00;FS=1.603;HaplotypeScore=1.2302;MLEAC=4;MLEAF=0.500;MQ=35.63;MQ0=0;MQRankSum=-4.682;QD=8.79;ReadPosRankSum=1.429;SB=-8.930e+02 GT:AD:DP:GQ:PL 0/1:56,34:90:99:907,0,1601 0/1:61,23:84:99:582,0,1984 0/1:54,28:82:99:741,0,1716 0/1:14,12:26:99:291,0,454 +chr3 164739055 . A T 1006.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.517;DP=288;Dels=0.00;FS=62.327;HaplotypeScore=0.9039;MLEAC=4;MLEAF=0.500;MQ=38.96;MQ0=0;MQRankSum=-1.482;QD=3.50;ReadPosRankSum=-1.744;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:82,15:97:99:311,0,2227 0/1:73,16:89:99:361,0,1707 0/1:66,15:81:99:300,0,1511 0/1:18,3:21:77:77,0,349 +chr3 167034814 rs13068132 T C 1340.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.295;DB;DP=127;Dels=0.00;FS=12.436;HaplotypeScore=1.7852;MLEAC=4;MLEAF=0.500;MQ=39.24;MQ0=0;MQRankSum=0.925;QD=10.56;ReadPosRankSum=0.740;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:29,16:45:99:539,0,777 0/1:21,10:31:99:322,0,757 0/1:29,12:41:99:388,0,1011 0/1:6,4:10:76:134,0,76 +chr3 167217960 rs13061106 C T 556.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.942;DB;DP=238;Dels=0.00;FS=2.072;HaplotypeScore=13.4100;MLEAC=1;MLEAF=0.125;MQ=30.61;MQ0=0;MQRankSum=0.907;QD=10.71;ReadPosRankSum=0.301;SB=-2.010e+02 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,192,2252 0/1:31,21:52:99:593,0,772 0/0:79,0:79:99:0,210,2411 0/0:36,0:37:75:0,75,838 +chr3 167245653 . A C 60.07 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.450;DP=107;Dels=0.00;FS=37.256;HaplotypeScore=4.5306;MLEAC=3;MLEAF=0.375;MQ=34.66;MQ0=0;MQRankSum=-3.739;QD=0.88;ReadPosRankSum=2.418;SB=-3.494e+00 GT:AD:DP:GQ:PL 0/0:36,3:39:4:0,4,692 0/1:20,5:25:2:2,0,364 0/1:29,3:32:32:32,0,662 0/1:8,3:11:65:65,0,75 +chr3 169492016 rs34847803 T TA 1432.52 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.109;DB;DP=101;FS=0.000;HaplotypeScore=8.2360;MLEAC=4;MLEAF=0.500;MQ=36.26;MQ0=0;MQRankSum=-2.338;QD=20.18;RPA=1,2;RU=A;ReadPosRankSum=1.670;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:29,0:30:87:0,87,1230 1/1:5,20:25:60:849,60,0 0/1:16,14:30:99:507,0,541 0/1:11,3:14:99:134,0,322 +chr3 169539649 rs7628572 T A 488.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.209;DB;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=30.41;MQ0=0;MQRankSum=-1.744;QD=14.37;ReadPosRankSum=-0.374;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:39:0,39,451 1/1:1,11:12:27:309,27,0 0/1:9,8:17:99:182,0,263 0/1:3,2:5:46:46,0,87 +chr3 169703540 . T A 38.99 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.862;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=11.0548;MLEAC=2;MLEAF=0.250;MQ=23.05;MQ0=0;MQRankSum=-1.065;QD=1.44;ReadPosRankSum=0.659;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,1:16:21:0,21,220 0/1:16,6:23:62:62,0,230 0/0:15,0:16:12:0,12,133 0/1:3,1:4:18:18,0,23 +chr3 169820191 rs77653857 A C 41.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.364;DB;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.6048;MLEAC=2;MLEAF=0.250;MQ=35.01;MQ0=0;MQRankSum=-3.650;QD=1.17;ReadPosRankSum=0.835;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,5:28:76:76,0,644 0/0:29,1:30:48:0,48,932 0/0:31,1:32:48:0,48,842 0/1:7,1:8:3:3,0,212 +chr3 170797532 . T G 68.15 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.694;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.3514;MLEAC=3;MLEAF=0.375;MQ=19.61;MQ0=0;MQRankSum=-3.329;QD=1.34;ReadPosRankSum=1.189;SB=3.98 GT:AD:DP:GQ:PL 0/1:7,11:18:72:72,0,132 0/1:18,7:25:23:23,0,203 0/0:12,3:16:15:0,15,150 0/1:3,5:8:16:16,0,27 +chr3 171944688 . C A 168.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.897;DP=93;Dels=0.00;FS=24.744;HaplotypeScore=3.3906;MLEAC=4;MLEAF=0.500;MQ=33.33;MQ0=0;MQRankSum=-0.455;QD=1.81;ReadPosRankSum=-0.847;SB=-1.455e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:30:30,0,171 0/1:31,4:35:58:58,0,633 0/1:28,4:32:55:55,0,612 0/1:7,3:10:68:68,0,112 +chr3 172046933 rs6799133 A G 2601.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.549;DB;DP=130;Dels=0.02;FS=4.564;HaplotypeScore=8.5582;MLEAC=6;MLEAF=0.750;MQ=35.51;MQ0=0;MQRankSum=-0.973;QD=20.01;ReadPosRankSum=1.042;SB=-1.192e-02 GT:AD:DP:GQ:PL 0/1:19,10:29:99:283,0,548 0/1:21,8:29:99:210,0,729 1/1:3,29:32:81:1044,81,0 1/1:5,33:38:47:1111,47,0 +chr3 172165766 . G C 35.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.465;DP=68;Dels=0.00;FS=24.777;HaplotypeScore=4.5733;MLEAC=2;MLEAF=0.250;MQ=34.91;MQ0=0;MQRankSum=-3.082;QD=1.12;ReadPosRankSum=-1.559;SB=0.167 GT:AD:DP:GQ:PL 0/1:10,1:11:16:16,0,253 0/0:14,0:15:36:0,36,443 0/0:20,1:21:48:0,48,598 0/1:16,5:21:61:61,0,319 +chr3 172546930 rs13071639 C T 2038.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.908;DB;DP=89;Dels=0.00;FS=30.567;HaplotypeScore=2.0813;MLEAC=8;MLEAF=1.00;MQ=27.28;MQ0=0;MQRankSum=2.413;QD=22.91;ReadPosRankSum=2.092;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:2,22:24:29:577,29,0 1/1:5,20:25:51:564,51,0 1/1:1,15:16:39:451,39,0 1/1:5,19:24:23:486,23,0 +chr3 178538304 rs6779867 C A 743.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=3.834;DB;DP=177;Dels=0.00;FS=1.646;HaplotypeScore=0.5820;MLEAC=2;MLEAF=0.250;MQ=38.63;MQ0=0;MQRankSum=-3.129;QD=8.45;ReadPosRankSum=1.302;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:26,19:45:99:536,0,872 0/1:33,10:43:99:249,0,1134 0/0:66,0:66:99:0,193,2498 0/0:23,0:23:66:0,66,873 +chr3 178543622 . G A 121.71 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.716;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=0.7330;MLEAC=3;MLEAF=0.375;MQ=35.25;MQ0=0;MQRankSum=-3.931;QD=1.14;ReadPosRankSum=3.950;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:37,2:39:4:0,4,746 0/1:31,4:35:28:28,0,797 0/1:37,3:40:6:6,0,763 0/1:24,6:30:99:128,0,423 +chr3 178978078 rs62410370 T G 759.83 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.999;DB;DP=179;Dels=0.02;FS=2.730;HaplotypeScore=2.0754;MLEAC=6;MLEAF=0.750;MQ=15.88;MQ0=0;MQRankSum=2.380;QD=4.24;ReadPosRankSum=1.614;SB=-2.239e+02 GT:AD:DP:GQ:PL 0/1:24,16:40:99:142,0,132 1/1:9,27:36:21:238,21,0 1/1:29,19:48:27:278,27,0 0/1:35,17:52:99:148,0,125 +chr3 179082050 . G A 415.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.906;DP=68;Dels=0.03;FS=0.000;HaplotypeScore=1.9552;MLEAC=4;MLEAF=0.500;MQ=26.13;MQ0=0;MQRankSum=-2.228;QD=6.11;ReadPosRankSum=2.249;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,6:17:99:111,0,142 0/1:15,7:22:99:159,0,245 0/1:14,6:20:82:108,0,82 0/1:4,3:7:23:80,0,23 +chr3 179103342 rs143010512 C CT 400.55 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.387;DB;DP=118;FS=0.000;HaplotypeScore=9.3106;MLEAC=4;MLEAF=0.500;MQ=21.95;MQ0=0;MQRankSum=-1.897;QD=3.39;RPA=9,10;RU=T;ReadPosRankSum=-2.295;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:22,9:21:70:225,0,70 0/1:36,2:28:28:28,0,443 0/1:24,5:20:99:132,0,195 0/1:14,4:9:67:67,0,101 +chr3 179294065 . A C 169.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.881;DP=121;Dels=0.03;FS=27.264;HaplotypeScore=6.4640;MLEAC=4;MLEAF=0.500;MQ=35.77;MQ0=0;MQRankSum=-2.846;QD=1.97;ReadPosRankSum=1.405;SB=-2.126e+00 GT:AD:DP:GQ:PL 0/1:26,4:30:52:52,0,609 0/0:31,3:34:1:0,1,957 0/1:29,6:35:99:116,0,706 0/1:16,2:18:42:42,0,289 +chr3 179469995 rs2239639 A G 182.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.387;DB;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=39.50;MQ0=0;MQRankSum=-0.048;QD=16.55;ReadPosRankSum=1.355;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,6:11:99:218,0,137 0/0:17,0:17:48:0,48,662 0/0:14,0:14:39:0,39,532 0/0:7,0:7:18:0,18,248 +chr3 179474767 rs3732992 A G 737.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.654;DB;DP=76;Dels=0.00;FS=2.698;HaplotypeScore=3.8116;MLEAC=3;MLEAF=0.375;MQ=27.87;MQ0=0;MQRankSum=1.824;QD=12.72;ReadPosRankSum=0.572;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:36:0,36,478 0/1:13,13:26:99:403,0,112 0/1:14,10:24:71:318,0,71 0/1:6,2:8:60:60,0,83 +chr3 179593072 rs55664665 T A 2134.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.302;DB;DP=139;Dels=0.01;FS=3.044;HaplotypeScore=1.4630;MLEAC=5;MLEAF=0.625;MQ=39.78;MQ0=0;MQRankSum=-6.404;QD=15.36;ReadPosRankSum=-0.342;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,24:29:72:940,72,0 0/1:26,18:44:99:585,0,884 0/1:34,9:43:99:205,0,1162 0/1:8,14:22:99:450,0,231 +chr3 180325658 . T A 53.27 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.000;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.8252;MLEAC=2;MLEAF=0.333;MQ=22.01;MQ0=0;MQRankSum=0.678;QD=3.80;ReadPosRankSum=-0.278;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:18:30,0,18 0/0:6,0:6:6:0,6,57 0/1:4,3:7:26:61,0,26 ./. +chr3 182178345 . T G 33.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=-1.119;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7374;MLEAC=4;MLEAF=1.00;MQ=9.44;MQ0=0;MQRankSum=1.813;QD=1.03;ReadPosRankSum=1.582;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:15,1:16:3:34,3,0 1/1:14,2:16:3:32,3,0 ./. ./. +chr3 183027438 . T C 42.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.463;DP=119;Dels=0.02;FS=0.000;HaplotypeScore=10.1221;MLEAC=2;MLEAF=0.250;MQ=34.68;MQ0=0;MQRankSum=-0.801;QD=0.71;ReadPosRankSum=0.213;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:34,4:38:48:48,0,813 0/0:24,1:25:4:0,4,441 0/0:32,1:33:23:0,23,647 0/1:19,2:21:35:35,0,333 +chr3 183041201 rs28513326 C G 954.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.182;DB;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=3.9311;MLEAC=4;MLEAF=0.500;MQ=30.25;MQ0=0;MQRankSum=-1.809;QD=11.64;ReadPosRankSum=3.073;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:42,0:43:99:0,114,1387 1/1:4,26:30:75:847,75,0 0/1:26,6:33:99:125,0,573 0/1:15,2:18:31:31,0,356 +chr3 183210918 . G T 143.73 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.033;DP=165;Dels=0.00;FS=9.002;HaplotypeScore=5.8364;MLEAC=1;MLEAF=0.125;MQ=33.38;MQ0=0;MQRankSum=-0.700;QD=5.13;ReadPosRankSum=0.458;SB=-6.350e+00 GT:AD:DP:GQ:PL 0/0:42,3:45:2:0,2,923 0/0:39,3:42:18:0,18,976 0/0:49,1:50:67:0,67,1186 0/1:21,7:28:99:179,0,319 +chr3 183210991 rs1979983 G T 2211.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.630;DB;DP=246;Dels=0.00;FS=4.101;HaplotypeScore=3.0978;MLEAC=3;MLEAF=0.375;MQ=37.37;MQ0=0;MQRankSum=-3.821;QD=12.36;ReadPosRankSum=2.111;SB=-7.650e+02 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,175,2286 0/1:27,23:50:99:740,0,626 0/1:52,32:84:99:986,0,1594 0/1:28,17:45:99:529,0,778 +chr3 183471850 . C A 152.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.307;DP=235;Dels=0.03;FS=0.000;HaplotypeScore=7.6177;MLEAC=4;MLEAF=0.500;MQ=31.23;MQ0=0;MQRankSum=-8.085;QD=0.65;ReadPosRankSum=5.398;SB=-1.485e-01 GT:AD:DP:GQ:PL 0/1:59,10:69:89:89,0,1607 0/1:43,7:50:50:50,0,1225 0/1:53,15:68:45:45,0,1452 0/1:33,9:42:11:11,0,834 +chr3 183504008 . A C 408.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.077;DP=142;Dels=0.01;FS=91.224;HaplotypeScore=11.5686;MLEAC=4;MLEAF=0.500;MQ=34.59;MQ0=0;MQRankSum=-3.103;QD=2.88;ReadPosRankSum=1.205;SB=-1.191e-02 GT:AD:DP:GQ:PL 0/1:24,7:31:99:150,0,592 0/1:27,10:37:99:138,0,766 0/1:36,7:43:99:117,0,978 0/1:27,3:30:46:46,0,607 +chr3 183515936 . T G 43.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.752;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=3.5140;MLEAC=2;MLEAF=0.250;MQ=29.04;MQ0=0;MQRankSum=0.322;QD=1.32;ReadPosRankSum=1.151;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:46:46,0,245 0/0:16,0:16:33:0,33,390 0/0:16,0:16:30:0,30,386 0/1:14,2:16:39:39,0,206 +chr3 183800560 rs36109132 A G 195.55 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.751;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.2892;MLEAC=4;MLEAF=1.00;MQ=25.95;MQ0=0;MQRankSum=0.751;QD=21.73;ReadPosRankSum=-0.751;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,5:5:12:133,12,0 1/1:1,3:4:9:98,9,0 +chr3 183823561 . C T 94.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.807;DP=108;Dels=0.00;FS=9.455;HaplotypeScore=7.7819;MLEAC=2;MLEAF=0.250;MQ=23.86;MQ0=0;MQRankSum=1.287;QD=1.74;ReadPosRankSum=-0.631;SB=0.775 GT:AD:DP:GQ:PL 0/0:22,2:24:6:0,6,332 0/0:28,2:30:27:0,27,418 0/1:23,4:27:77:77,0,299 0/1:24,3:27:58:58,0,230 +chr3 183823730 . C G 44.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.508;DP=220;Dels=0.00;FS=35.168;HaplotypeScore=9.2931;MLEAC=2;MLEAF=0.250;MQ=19.86;MQ0=0;MQRankSum=2.305;QD=0.38;ReadPosRankSum=-1.712;SB=-1.381e+00 GT:AD:DP:GQ:PL 0/1:57,2:59:29:29,0,291 0/0:46,3:49:34:0,34,552 0/1:54,4:58:56:56,0,402 0/0:51,2:54:8:0,8,322 +chr3 183861458 . T G 137.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.764;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.6796;MLEAC=3;MLEAF=0.375;MQ=28.18;MQ0=0;MQRankSum=-0.375;QD=5.71;ReadPosRankSum=2.286;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,35 0/1:7,1:8:6:6,0,141 0/1:6,3:9:33:90,0,33 0/1:3,4:7:36:81,0,36 +chr3 183976390 . C A 69.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.106;DP=95;Dels=0.00;FS=2.312;HaplotypeScore=0.6552;MLEAC=4;MLEAF=0.500;MQ=35.13;MQ0=0;MQRankSum=-1.747;QD=0.74;ReadPosRankSum=-1.499;SB=-2.620e-01 GT:AD:DP:GQ:PL 0/1:27,3:30:45:45,0,685 0/1:21,3:24:25:25,0,534 0/1:20,2:22:11:11,0,580 0/1:17,2:19:31:31,0,327 +chr3 184003217 . T G 249.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.067;DP=121;Dels=0.01;FS=4.995;HaplotypeScore=4.1438;MLEAC=4;MLEAF=0.500;MQ=27.16;MQ0=0;MQRankSum=-3.691;QD=2.06;ReadPosRankSum=5.017;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,5:30:88:88,0,466 0/1:24,7:31:69:69,0,280 0/1:28,5:33:63:63,0,295 0/1:17,9:26:72:72,0,214 +chr3 184005715 . G T 57.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.316;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=5.4651;MLEAC=2;MLEAF=0.250;MQ=27.63;MQ0=0;MQRankSum=-2.617;QD=1.02;ReadPosRankSum=2.253;SB=-1.903e-01 GT:AD:DP:GQ:PL 0/0:26,1:27:25:0,25,518 0/1:29,3:32:16:16,0,356 0/0:27,0:27:48:0,48,607 0/1:17,6:24:83:83,0,171 +chr3 184020100 rs71185698 C CA 1976.61 . AC=7;AF=0.875;AN=8;BaseQRankSum=-1.253;DB;DP=95;FS=0.000;HaplotypeScore=18.9946;MLEAC=7;MLEAF=0.875;MQ=27.51;MQ0=0;MQRankSum=-1.422;QD=20.81;RPA=1,2;RU=A;ReadPosRankSum=0.487;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:18,5:21:99:113,0,546 1/1:9,14:19:14:627,14,0 1/1:9,19:25:44:823,44,0 1/1:5,13:13:33:467,33,0 +chr3 184056135 rs149554716 A C 191.34 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.304;DB;DP=30;Dels=0.00;FS=18.512;HaplotypeScore=1.6267;MLEAC=5;MLEAF=0.625;MQ=30.41;MQ0=0;MQRankSum=0.608;QD=6.38;ReadPosRankSum=0.836;SB=0.051 GT:AD:DP:GQ:PL 1/1:5,2:7:6:54,6,0 0/1:5,2:7:62:62,0,85 0/1:5,2:7:54:54,0,62 0/1:6,3:9:65:65,0,66 +chr3 184062329 . C T 225.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.472;DP=108;Dels=0.01;FS=47.271;HaplotypeScore=1.5330;MLEAC=4;MLEAF=0.500;MQ=28.37;MQ0=0;MQRankSum=-1.090;QD=2.09;ReadPosRankSum=0.078;SB=-1.204e-02 GT:AD:DP:GQ:PL 0/1:22,4:26:68:68,0,434 0/1:20,6:26:42:42,0,396 0/1:24,7:31:95:95,0,557 0/1:19,5:24:63:63,0,458 +chr3 184064448 . A C 65.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.737;DP=55;Dels=0.00;FS=15.768;HaplotypeScore=2.8388;MLEAC=3;MLEAF=0.375;MQ=20.81;MQ0=0;MQRankSum=1.674;QD=1.52;ReadPosRankSum=-1.482;SB=-4.246e+00 GT:AD:DP:GQ:PL 0/1:6,3:9:65:80,0,65 0/0:12,0:12:9:0,9,84 0/1:19,2:21:23:23,0,140 0/1:12,1:13:2:2,0,166 +chr3 184069822 . C T 150.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.947;DP=173;Dels=0.00;FS=34.905;HaplotypeScore=18.8966;MLEAC=3;MLEAF=0.375;MQ=27.26;MQ0=0;MQRankSum=0.200;QD=1.26;ReadPosRankSum=-0.257;SB=-1.438e-02 GT:AD:DP:GQ:PL 0/1:43,4:47:36:36,0,839 0/1:31,4:36:36:36,0,448 0/0:52,1:53:78:0,78,1046 0/1:28,9:37:99:122,0,503 +chr3 184075191 . G T 33.29 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.293;DP=172;Dels=0.02;FS=52.982;HaplotypeScore=13.9626;MLEAC=1;MLEAF=0.125;MQ=30.32;MQ0=0;MQRankSum=-2.824;QD=0.88;ReadPosRankSum=3.376;SB=-3.893e+00 GT:AD:DP:GQ:PL 0/0:49,1:51:74:0,74,1132 0/1:30,6:36:69:69,0,660 0/0:42,3:45:6:0,6,934 0/0:36,1:37:69:0,69,737 +chr3 184076817 . G A 94.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.415;DP=123;Dels=0.00;FS=12.548;HaplotypeScore=5.0547;MLEAC=2;MLEAF=0.250;MQ=28.91;MQ0=0;MQRankSum=-0.564;QD=1.50;ReadPosRankSum=-1.839;SB=0.422 GT:AD:DP:GQ:PL 0/0:23,1:25:24:0,24,271 0/1:27,5:32:99:106,0,266 0/0:34,1:35:26:0,26,523 0/1:29,2:31:30:30,0,283 +chr3 184289152 rs13069661 A G 285.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.657;DB;DP=90;Dels=0.00;FS=4.233;HaplotypeScore=1.8227;MLEAC=1;MLEAF=0.125;MQ=38.08;MQ0=0;MQRankSum=-0.539;QD=12.43;ReadPosRankSum=1.604;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/0:22,0:22:57:0,57,765 0/1:13,10:23:99:322,0,322 0/0:25,0:25:66:0,66,860 0/0:20,0:20:48:0,48,613 +chr3 184618583 rs75165795 A G 446.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.767;DB;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=29.16;MQ0=0;MQRankSum=2.750;QD=21.27;ReadPosRankSum=-1.220;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,11:12:33:405,33,0 0/0:12,0:12:27:0,27,295 0/1:3,2:5:63:63,0,79 0/1:3,1:4:27:27,0,57 +chr3 184644509 . C T 33.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.199;DP=100;Dels=0.03;FS=0.000;HaplotypeScore=11.5099;MLEAC=2;MLEAF=0.250;MQ=27.64;MQ0=0;MQRankSum=0.776;QD=0.59;ReadPosRankSum=-0.127;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,2:25:7:7,0,221 0/0:31,0:31:30:0,30,309 0/1:29,3:32:65:65,0,264 0/0:9,0:9:3:0,3,26 +chr3 184714014 rs9860814 C T 714.34 . AC=6;AF=1.00;AN=6;DB;DP=24;Dels=0.00;FS=10.212;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=34.38;MQ0=0;QD=31.06;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,5:6:15:194,15,0 1/1:1,5:6:15:203,15,0 1/1:1,10:11:27:355,27,0 ./. +chr3 184911151 rs3732933 T C 932.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=4.345;DB;DP=257;Dels=0.00;FS=13.271;HaplotypeScore=1.9855;MLEAC=1;MLEAF=0.125;MQ=36.97;MQ0=0;MQRankSum=-0.361;QD=15.05;ReadPosRankSum=0.172;SB=-3.190e+02 GT:AD:DP:GQ:PL 0/1:33,29:62:99:969,0,1002 0/0:65,0:65:99:0,181,2315 0/0:68,0:68:99:0,193,2514 0/0:62,0:62:99:0,165,2059 +chr3 185214358 . G C 60.37 . AC=4;AF=0.667;AN=6;BaseQRankSum=2.060;DP=37;Dels=0.03;FS=2.831;HaplotypeScore=9.3147;MLEAC=4;MLEAF=0.667;MQ=18.80;MQ0=0;MQRankSum=1.030;QD=2.24;ReadPosRankSum=-1.189;SB=30.97 GT:AD:DP:GQ:PL 0/1:4,2:6:22:22,0,39 0/1:7,3:11:18:46,0,18 1/1:8,1:9:3:30,3,0 ./. +chr3 185407308 . C G 77.82 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.900;DP=78;Dels=0.00;FS=50.561;HaplotypeScore=7.3307;MLEAC=4;MLEAF=0.500;MQ=18.32;MQ0=0;MQRankSum=-0.142;QD=1.00;ReadPosRankSum=1.032;SB=0.448 GT:AD:DP:GQ:PL 0/1:15,4:20:37:37,0,105 0/1:16,4:21:13:13,0,48 0/1:19,5:24:52:52,0,206 0/1:10,3:13:18:18,0,71 +chr3 185879431 . C T 35.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.843;DP=142;Dels=0.00;FS=29.461;HaplotypeScore=4.6975;MLEAC=2;MLEAF=0.250;MQ=35.69;MQ0=0;MQRankSum=-3.113;QD=0.46;ReadPosRankSum=-0.876;SB=1.21 GT:AD:DP:GQ:PL 0/0:27,1:28:37:0,37,773 0/0:35,2:37:54:0,54,1095 0/1:33,5:38:33:33,0,961 0/1:35,4:39:44:44,0,749 +chr3 186006618 rs1004588 G C 1171.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.106;DB;DP=159;Dels=0.01;FS=0.884;HaplotypeScore=10.4884;MLEAC=4;MLEAF=0.500;MQ=29.49;MQ0=0;MQRankSum=-1.482;QD=7.37;ReadPosRankSum=0.049;SB=-3.290e+02 GT:AD:DP:GQ:PL 0/1:21,17:39:43:497,0,43 0/1:27,6:33:99:158,0,288 0/1:38,10:49:99:232,0,606 0/1:23,11:37:99:327,0,100 +chr3 186015303 rs3819859 A G 3577.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.113;DB;DP=123;Dels=0.00;FS=13.046;HaplotypeScore=1.4103;MLEAC=8;MLEAF=1.00;MQ=30.09;MQ0=0;MQRankSum=-2.752;QD=29.08;ReadPosRankSum=3.492;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,27:28:75:880,75,0 1/1:1,40:41:87:1254,87,0 1/1:5,31:36:3:927,3,0 1/1:1,17:18:16:516,16,0 +chr3 186287777 rs2889755 T C 104.67 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.300;DB;DP=9;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=23.67;MQ0=0;MQRankSum=1.754;QD=11.63;ReadPosRankSum=1.754;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,1:5:3:41,3,0 1/1:0,2:2:6:65,6,0 1/1:1,1:2:3:34,3,0 ./. +chr3 186299242 . T C 138.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.436;DP=136;Dels=0.00;FS=49.984;HaplotypeScore=20.4587;MLEAC=4;MLEAF=0.500;MQ=26.02;MQ0=0;MQRankSum=-1.689;QD=1.02;ReadPosRankSum=3.828;SB=-6.235e-01 GT:AD:DP:GQ:PL 0/1:28,7:35:99:108,0,208 0/1:29,3:33:14:14,0,339 0/1:34,4:38:7:7,0,419 0/1:27,3:30:51:51,0,247 +chr3 186335126 . G T 306.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.284;DP=110;Dels=0.01;FS=50.948;HaplotypeScore=8.6450;MLEAC=4;MLEAF=0.500;MQ=29.01;MQ0=0;MQRankSum=-3.426;QD=2.79;ReadPosRankSum=2.035;SB=-1.468e-02 GT:AD:DP:GQ:PL 0/1:18,8:26:99:169,0,284 0/1:17,6:23:69:69,0,332 0/1:32,5:37:31:31,0,652 0/1:16,7:23:80:80,0,210 +chr3 186389630 . G T 135.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.400;DP=60;Dels=0.03;FS=10.307;HaplotypeScore=19.7249;MLEAC=4;MLEAF=0.500;MQ=18.49;MQ0=0;MQRankSum=-0.092;QD=2.26;ReadPosRankSum=0.154;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,2:9:16:26,0,16 0/1:14,3:17:40:40,0,41 0/1:16,3:19:17:68,0,17 0/1:8,4:13:42:44,0,42 +chr3 186437795 . A G 102.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.418;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.2479;MLEAC=4;MLEAF=0.500;MQ=36.24;MQ0=0;MQRankSum=-4.172;QD=1.74;ReadPosRankSum=2.872;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:82:82,0,335 0/1:14,2:16:12:12,0,376 0/1:15,3:18:45:45,0,349 0/1:5,1:6:5:5,0,168 +chr3 186456886 . A G 323.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.771;DP=85;Dels=0.01;FS=5.831;HaplotypeScore=9.1668;MLEAC=4;MLEAF=0.500;MQ=26.73;MQ0=0;MQRankSum=-3.902;QD=3.81;ReadPosRankSum=2.855;SB=-1.190e-02 GT:AD:DP:GQ:PL 0/1:14,7:21:80:80,0,319 0/1:19,5:24:52:52,0,182 0/1:17,12:29:99:190,0,205 0/1:8,2:10:44:44,0,156 +chr3 186509517 rs187868 G A 2383.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.716;DB;DP=125;Dels=0.00;FS=4.770;HaplotypeScore=1.4251;MLEAC=5;MLEAF=0.625;MQ=36.42;MQ0=0;MQRankSum=-1.630;QD=19.07;ReadPosRankSum=1.903;SB=-7.290e+02 GT:AD:DP:GQ:PL 0/1:23,15:38:99:469,0,745 1/1:2,35:37:87:1313,87,0 0/1:21,17:38:99:553,0,528 0/1:9,3:12:94:94,0,263 +chr3 186617890 . G A 61.27 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.423;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.0387;MLEAC=2;MLEAF=0.250;MQ=24.59;MQ0=0;MQRankSum=-0.027;QD=3.22;ReadPosRankSum=2.497;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,4:13:83:83,0,145 0/0:15,0:15:12:0,12,128 0/0:10,0:10:9:0,9,94 0/1:5,1:6:19:19,0,49 +chr3 186617896 . G T 32.31 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.501;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5360;MLEAC=2;MLEAF=0.250;MQ=23.18;MQ0=0;MQRankSum=0.448;QD=1.40;ReadPosRankSum=1.618;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:59:59,0,135 0/0:17,0:17:21:0,21,193 0/0:12,0:12:12:0,12,132 0/1:8,1:9:14:14,0,62 +chr3 186790651 . G C 126.95 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.393;DP=281;Dels=0.00;FS=338.374;HaplotypeScore=14.4692;MLEAC=4;MLEAF=0.500;MQ=35.10;MQ0=0;MQRankSum=-8.683;QD=0.45;ReadPosRankSum=2.172;SB=-2.873e+00 GT:AD:DP:GQ:PL 0/1:68,11:79:23:23,0,2040 0/1:61,15:76:95:95,0,1861 0/1:73,9:83:10:10,0,2205 0/1:36,6:42:41:41,0,791 +chr3 186793300 . G A 275.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.039;DP=73;Dels=0.01;FS=42.237;HaplotypeScore=12.9112;MLEAC=4;MLEAF=0.500;MQ=22.89;MQ0=0;MQRankSum=-2.297;QD=3.78;ReadPosRankSum=-0.409;SB=-2.727e+00 GT:AD:DP:GQ:PL 0/1:9,6:15:66:66,0,139 0/1:8,4:12:53:68,0,53 0/1:13,8:21:19:120,0,19 0/1:19,5:24:64:64,0,227 +chr3 187088615 . C A 85.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.609;DP=55;Dels=0.02;FS=42.684;HaplotypeScore=11.0352;MLEAC=4;MLEAF=0.500;MQ=29.34;MQ0=0;MQRankSum=-0.122;QD=1.56;ReadPosRankSum=2.069;SB=-9.869e-01 GT:AD:DP:GQ:PL 0/1:13,2:15:38:38,0,305 0/1:8,1:9:5:5,0,207 0/1:14,3:17:47:47,0,278 0/1:11,2:13:37:37,0,69 +chr3 187387983 . G C 49.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.174;DP=24;Dels=0.04;FS=2.865;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=27.21;MQ0=0;MQRankSum=0.280;QD=4.92;ReadPosRankSum=-1.174;SB=1.15 GT:AD:DP:GQ:PL 1/1:1,1:2:3:39,3,0 0/0:5,0:5:9:0,9,82 0/1:6,2:8:53:53,0,57 0/0:8,0:8:21:0,21,256 +chr3 187897423 . G C 32.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.492;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=4.6305;MLEAC=2;MLEAF=0.250;MQ=24.88;MQ0=0;MQRankSum=0.632;QD=4.69;ReadPosRankSum=-2.178;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,2:7:6:72,6,0 0/0:10,0:10:3:0,3,42 0/0:16,0:16:12:0,12,107 0/0:5,0:5:3:0,3,27 +chr3 189587274 rs6790167 A G 372.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.054;DB;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.4110;MLEAC=4;MLEAF=0.500;MQ=37.34;MQ0=0;MQRankSum=-2.072;QD=17.75;ReadPosRankSum=0.270;SB=1.98 GT:AD:DP:GQ:PL 0/0:16,0:16:45:0,45,616 1/1:1,6:9:18:228,18,0 0/1:5,5:10:99:161,0,140 0/1:1,1:2:32:32,0,35 +chr3 189590562 . A T 147.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.396;DP=30;Dels=0.00;FS=2.831;HaplotypeScore=3.0373;MLEAC=4;MLEAF=0.500;MQ=25.45;MQ0=0;MQRankSum=1.189;QD=4.92;ReadPosRankSum=0.475;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:59:84,0,59 0/1:4,2:6:25:62,0,25 0/1:8,1:9:26:26,0,27 0/1:4,1:5:18:18,0,27 +chr3 190106071 rs138519925 AG A 908.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=7.557;DB;DP=120;FS=12.390;HaplotypeScore=74.6004;MLEAC=4;MLEAF=0.500;MQ=30.88;MQ0=0;MQRankSum=-3.486;QD=7.57;RPA=3,2;RU=G;ReadPosRankSum=-0.501;SB=-4.060e+02;STR GT:AD:DP:GQ:PL 0/1:21,10:29:99:338,0,521 0/1:18,7:19:99:194,0,311 0/1:28,9:34:99:331,0,622 0/1:20,5:20:97:97,0,438 +chr3 190158078 rs145746328 G T 208.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.054;DB;DP=149;Dels=0.00;FS=1.466;HaplotypeScore=0.9296;MLEAC=1;MLEAF=0.125;MQ=40.52;MQ0=0;MQRankSum=-3.498;QD=7.21;ReadPosRankSum=0.530;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:20,9:29:99:245,0,756 0/0:40,0:40:99:0,114,1572 0/0:48,0:48:99:0,141,1935 0/0:32,0:32:96:0,96,1233 +chr3 191670384 . A T 73.50 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.470;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.8626;MLEAC=2;MLEAF=0.500;MQ=25.34;MQ0=0;MQRankSum=-0.470;QD=5.25;ReadPosRankSum=0.851;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:17:17,0,89 ./. 0/1:3,4:7:12:91,0,12 ./. +chr3 192874285 rs1979354 G A 95.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.974;DB;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4090;MLEAC=4;MLEAF=0.500;MQ=18.51;MQ0=0;MQRankSum=-2.790;QD=1.28;ReadPosRankSum=0.651;SB=-3.293e+01 GT:AD:DP:GQ:PL 0/1:2,26:28:26:63,0,26 0/1:8,7:15:18:18,0,63 0/1:9,11:20:25:25,0,55 0/1:8,3:12:32:32,0,73 +chr3 193016895 rs1878716 T C 1171.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.714;DB;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=1.2733;MLEAC=5;MLEAF=0.625;MQ=32.16;MQ0=0;MQRankSum=-1.747;QD=17.23;ReadPosRankSum=0.374;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,21:23:60:699,60,0 0/1:12,10:22:99:278,0,346 0/1:9,9:18:99:215,0,303 0/1:2,1:4:25:25,0,34 +chr3 193031926 rs2280268 C T 2856.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=5.090;DB;DP=169;Dels=0.00;FS=25.717;HaplotypeScore=2.5124;MLEAC=5;MLEAF=0.625;MQ=35.18;MQ0=0;MQRankSum=1.355;QD=16.90;ReadPosRankSum=2.573;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:14,29:43:87:1131,87,0 0/1:28,18:46:99:574,0,470 0/1:20,21:41:99:693,0,541 0/1:23,16:39:99:504,0,517 +chr3 193032569 . G A 135.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.115;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.3681;MLEAC=3;MLEAF=0.375;MQ=31.74;MQ0=0;MQRankSum=1.963;QD=3.78;ReadPosRankSum=2.693;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:99:117,0,153 0/0:21,1:22:6:0,6,370 0/1:8,2:10:39:39,0,189 0/1:9,1:10:22:22,0,123 +chr3 193081122 rs12637558 G T 1891.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.870;DB;DP=159;Dels=0.00;FS=2.212;HaplotypeScore=2.2260;MLEAC=4;MLEAF=0.500;MQ=36.34;MQ0=0;MQRankSum=-5.762;QD=18.73;ReadPosRankSum=-1.118;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:99:1206,102,0 0/0:58,0:58:99:0,165,2150 0/1:31,15:46:99:428,0,961 0/1:10,10:20:99:306,0,284 +chr3 193081830 rs923496 A G 4425.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.202;DB;DP=134;Dels=0.01;FS=54.840;HaplotypeScore=4.2355;MLEAC=8;MLEAF=1.00;MQ=34.28;MQ0=0;MQRankSum=0.870;QD=33.02;ReadPosRankSum=2.809;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,25:27:51:896,51,0 1/1:1,36:37:74:1317,74,0 1/1:7,37:44:99:1389,111,0 1/1:2,23:25:69:823,69,0 +chr3 193096525 . C T 129.94 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.987;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=7.7979;MLEAC=2;MLEAF=0.250;MQ=32.12;MQ0=0;MQRankSum=-1.390;QD=1.19;ReadPosRankSum=1.929;SB=0.073 GT:AD:DP:GQ:PL 0/1:48,10:58:99:162,0,1106 0/0:63,1:64:99:0,101,1556 0/1:48,3:51:7:7,0,785 0/0:38,4:42:14:0,14,818 +chr3 193210596 rs73198989 T C 30.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.392;DB;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=4.3533;MLEAC=2;MLEAF=0.250;MQ=29.87;MQ0=0;MQRankSum=-0.019;QD=1.10;ReadPosRankSum=-0.438;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:60:60,0,346 0/1:8,1:9:11:11,0,259 0/0:14,0:15:33:0,33,379 0/0:5,0:5:9:0,9,95 +chr3 193336639 rs3772393 T C 429.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.307;DB;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.3264;MLEAC=3;MLEAF=0.375;MQ=35.91;MQ0=0;MQRankSum=-1.249;QD=5.89;ReadPosRankSum=0.185;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,102,1332 0/1:18,9:27:99:257,0,598 0/1:27,5:32:93:93,0,859 0/1:10,4:14:99:123,0,165 +chr3 194079899 rs6789775 T A 74.28 . AC=5;AF=0.833;AN=6;BaseQRankSum=2.037;DB;DP=16;Dels=0.00;FS=2.881;HaplotypeScore=1.9637;MLEAC=5;MLEAF=0.833;MQ=17.49;MQ0=0;MQRankSum=1.663;QD=6.19;ReadPosRankSum=-1.034;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,1:4:28:28,0,59 1/1:2,2:5:6:58,6,0 ./. 1/1:2,1:3:3:27,3,0 +chr3 194362918 . C T 92.12 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.716;DP=115;Dels=0.02;FS=29.177;HaplotypeScore=11.2717;MLEAC=2;MLEAF=0.250;MQ=34.13;MQ0=0;MQRankSum=-1.303;QD=1.62;ReadPosRankSum=0.639;SB=-1.016e+00 GT:AD:DP:GQ:PL 0/1:25,5:30:99:116,0,655 0/0:29,3:32:10:0,10,837 0/0:24,1:25:30:0,30,675 0/1:23,3:26:17:17,0,562 +chr3 194767300 . A G 61.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DP=11;Dels=0.00;FS=3.233;HaplotypeScore=0.9665;MLEAC=4;MLEAF=1.00;MQ=14.76;MQ0=0;MQRankSum=1.231;QD=12.24;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:63,6,0 ./. ./. 1/1:2,1:3:3:32,3,0 +chr3 195022946 . T A 63.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.026;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.4823;MLEAC=2;MLEAF=0.250;MQ=23.21;MQ0=0;MQRankSum=1.791;QD=1.51;ReadPosRankSum=-0.665;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:29,0:29:33:0,33,326 0/0:33,0:33:36:0,36,378 0/1:27,4:31:72:72,0,168 0/1:9,2:11:33:33,0,44 +chr3 195256530 . A C 47.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.251;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9138;MLEAC=2;MLEAF=0.250;MQ=30.09;MQ0=0;MQRankSum=0.025;QD=1.11;ReadPosRankSum=2.176;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,3:23:59:59,0,278 0/0:21,0:21:39:0,39,434 0/1:18,2:20:30:30,0,322 0/0:9,0:9:21:0,21,265 +chr3 195393030 . A G 90.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.586;DP=34;Dels=0.03;FS=1.564;HaplotypeScore=1.2213;MLEAC=4;MLEAF=0.500;MQ=20.80;MQ0=0;MQRankSum=0.821;QD=3.13;ReadPosRankSum=-0.211;SB=-2.860e+01 GT:AD:DP:GQ:PL 1/1:2,4:6:9:97,9,0 0/1:6,2:8:20:20,0,56 0/1:12,2:14:20:20,0,89 0/0:5,0:5:12:0,12,119 +chr3 195474159 rs62284986 G A 1628.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.197;DB;DP=124;Dels=0.00;FS=9.365;HaplotypeScore=0.2416;MLEAC=4;MLEAF=0.500;MQ=36.08;MQ0=0;MQRankSum=-1.838;QD=19.86;ReadPosRankSum=-0.041;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:78:962,78,0 0/0:42,0:42:99:0,117,1469 0/1:17,10:27:99:290,0,593 0/1:15,14:29:99:425,0,257 +chr3 195500905 . A C 38.77 . AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=3.979;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=20.32;MQ0=0;QD=19.38;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6:70,6,0 ./. ./. +chr3 195506117 . G A 232.55 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.788;DP=138;Dels=0.01;FS=97.650;HaplotypeScore=9.2239;MLEAC=5;MLEAF=0.625;MQ=12.59;MQ0=0;MQRankSum=3.069;QD=1.69;ReadPosRankSum=1.904;SB=-1.161e-02 GT:AD:DP:GQ:PL 1/1:22,5:27:9:75,9,0 0/1:27,8:35:37:37,0,44 0/1:31,5:36:81:92,0,81 0/1:33,6:39:73:73,0,104 +chr3 195506118 . C G 64.42 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.140;DP=132;Dels=0.01;FS=7.758;HaplotypeScore=10.3735;MLEAC=3;MLEAF=0.375;MQ=12.72;MQ0=0;MQRankSum=2.095;QD=0.60;ReadPosRankSum=-2.059;SB=-4.765e+01 GT:AD:DP:GQ:PL 0/0:23,0:24:9:0,9,76 0/1:26,8:35:41:41,0,58 0/1:31,2:34:25:25,0,137 0/1:32,5:38:41:41,0,145 +chr3 195510951 . G A 115.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.604;DP=323;Dels=0.01;FS=4.164;HaplotypeScore=6.8275;MLEAC=4;MLEAF=0.500;MQ=7.69;MQ0=0;MQRankSum=2.562;QD=0.36;ReadPosRankSum=3.129;SB=-1.599e+01 GT:AD:DP:GQ:PL 0/1:75,4:80:55:55,0,57 0/1:80,3:83:50:50,0,96 0/1:74,4:78:29:40,0,29 0/1:78,2:80:13:13,0,43 +chr3 195512262 . C G 61.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.587;DP=133;Dels=0.02;FS=13.033;HaplotypeScore=11.6180;MLEAC=3;MLEAF=0.375;MQ=11.28;MQ0=0;MQRankSum=-0.702;QD=0.63;ReadPosRankSum=-3.349;SB=-1.878e+01 GT:AD:DP:GQ:PL 0/1:20,7:27:35:35,0,72 0/0:32,3:35:6:0,6,57 0/1:31,9:40:53:53,0,77 0/1:18,8:28:15:15,0,52 +chr3 196045031 . C A 64.89 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.600;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.2206;MLEAC=5;MLEAF=0.625;MQ=32.29;MQ0=0;MQRankSum=0.825;QD=4.06;ReadPosRankSum=-0.536;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:21:21,0,33 1/1:1,1:2:3:31,3,0 1/1:6,2:8:6:58,6,0 0/0:5,0:5:9:0,9,97 +chr3 196435529 . T G 138.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.073;DP=122;Dels=0.00;FS=9.060;HaplotypeScore=5.1887;MLEAC=2;MLEAF=0.250;MQ=31.81;MQ0=0;MQRankSum=-2.722;QD=2.27;ReadPosRankSum=1.912;SB=5.255e-03 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,102,1188 0/1:32,8:40:99:112,0,797 0/0:24,1:25:34:0,34,793 0/1:17,4:21:68:68,0,369 +chr3 196627361 rs6772870 G A 374.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.573;DB;DP=56;Dels=0.02;FS=2.847;HaplotypeScore=0.9232;MLEAC=4;MLEAF=0.500;MQ=28.49;MQ0=0;MQRankSum=-3.439;QD=10.41;ReadPosRankSum=1.013;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:51:0,51,609 1/1:0,13:13:33:304,33,0 0/1:13,7:20:88:88,0,360 0/1:1,1:2:16:31,0,16 +chr3 196674749 rs4916589 C T 635.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.918;DB;DP=111;Dels=0.00;FS=5.472;HaplotypeScore=5.8754;MLEAC=3;MLEAF=0.375;MQ=29.65;MQ0=0;MQRankSum=-0.965;QD=8.26;ReadPosRankSum=0.406;SB=-2.300e+02 GT:AD:DP:GQ:PL 0/1:14,6:20:99:141,0,320 0/0:33,0:34:84:0,84,972 0/1:16,16:32:99:378,0,275 0/1:18,7:25:99:160,0,367 +chr3 196771657 . C T 34.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.985;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=1.0250;MLEAC=3;MLEAF=0.375;MQ=34.86;MQ0=0;MQRankSum=-1.519;QD=0.76;ReadPosRankSum=0.151;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,4:27:45:45,0,606 0/1:13,1:14:1:1,0,261 0/0:20,1:21:3:0,3,420 0/1:3,1:4:27:27,0,28 +chr3 196812439 . A C 38.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.585;DP=216;Dels=0.00;FS=8.868;HaplotypeScore=3.7122;MLEAC=2;MLEAF=0.250;MQ=36.92;MQ0=0;MQRankSum=-3.461;QD=0.42;ReadPosRankSum=0.281;SB=-3.025e-01 GT:AD:DP:GQ:PL 0/1:45,4:49:17:17,0,1082 0/0:56,2:59:71:0,71,1262 0/0:63,2:65:99:0,99,1675 0/1:37,6:43:63:63,0,862 +chr3 196865028 . A C 133.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.348;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=6.5642;MLEAC=4;MLEAF=0.500;MQ=27.52;MQ0=0;MQRankSum=0.281;QD=2.12;ReadPosRankSum=2.289;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:19:19,0,247 0/1:17,1:18:5:5,0,263 0/1:12,4:16:38:94,0,38 0/1:9,3:12:57:57,0,160 +chr3 196869688 rs7628652 A G 4013.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=5.229;DB;DP=124;Dels=0.01;FS=68.980;HaplotypeScore=3.3026;MLEAC=7;MLEAF=0.875;MQ=33.59;MQ0=0;MQRankSum=2.883;QD=32.36;ReadPosRankSum=1.055;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,33:36:71:1242,71,0 1/1:6,34:40:99:1302,102,0 1/1:3,32:35:70:1135,70,0 0/1:2,10:12:8:334,0,8 +chr3 197482694 . T G 389.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.426;DP=193;Dels=0.01;FS=66.345;HaplotypeScore=3.4715;MLEAC=4;MLEAF=0.500;MQ=19.61;MQ0=0;MQRankSum=6.052;QD=2.02;ReadPosRankSum=-4.026;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:42,4:46:92:92,0,128 0/1:56,5:63:99:109,0,192 0/1:49,7:56:99:139,0,232 0/1:20,7:27:92:92,0,99 +chr3 197579466 rs36078463 C T 482.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.900;DB;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=6.4636;MLEAC=1;MLEAF=0.125;MQ=36.82;MQ0=0;MQRankSum=-2.162;QD=9.66;ReadPosRankSum=3.214;SB=-1.350e+02 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,150,1906 0/1:31,19:50:99:519,0,846 0/0:67,0:67:99:0,202,2577 0/0:25,0:25:66:0,66,819 +chr3 197703574 . G C 77.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.444;DP=252;Dels=0.00;FS=21.454;HaplotypeScore=4.8030;MLEAC=2;MLEAF=0.250;MQ=34.30;MQ0=0;MQRankSum=0.871;QD=0.62;ReadPosRankSum=-0.312;SB=-4.596e-01 GT:AD:DP:GQ:PL 0/1:61,8:69:99:103,0,1289 0/0:56,2:58:80:0,80,1506 0/0:67,2:69:99:0,107,1816 0/1:51,4:56:15:15,0,961 +chr4 64892 rs3883809 G C 313.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.409;DB;DP=339;Dels=0.00;FS=2.318;HaplotypeScore=2.4314;MLEAC=4;MLEAF=0.500;MQ=16.76;MQ0=0;MQRankSum=-6.611;QD=0.93;ReadPosRankSum=0.262;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:62,33:95:99:220,0,404 0/1:45,37:82:30:30,0,351 0/1:65,32:97:27:27,0,570 0/1:45,20:65:79:79,0,424 +chr4 65108 rs77210260 G A 129.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.413;DB;DP=515;Dels=0.00;FS=5.394;HaplotypeScore=2.8761;MLEAC=2;MLEAF=0.250;MQ=18.67;MQ0=0;MQRankSum=-0.351;QD=0.57;ReadPosRankSum=1.221;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/0:137,8:146:61:0,61,1382 0/0:140,0:140:99:0,141,1326 0/1:121,18:139:99:152,0,933 0/1:85,4:90:19:19,0,632 +chr4 501473 rs7659929 C A 75.32 . AC=3;AF=0.500;AN=6;BaseQRankSum=2.510;DB;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=1.6089;MLEAC=3;MLEAF=0.500;MQ=32.65;MQ0=0;MQRankSum=1.324;QD=5.38;ReadPosRankSum=0.776;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:32:32,0,108 0/0:12,0:12:21:0,21,281 1/1:4,2:6:6:85,6,0 ./. +chr4 527785 . T A 69.32 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.613;DP=51;Dels=0.00;FS=5.334;HaplotypeScore=13.1335;MLEAC=5;MLEAF=0.833;MQ=14.99;MQ0=0;MQRankSum=1.187;QD=1.73;ReadPosRankSum=-0.335;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:15,3:18:6:69,6,0 0/1:11,2:13:17:17,0,46 1/1:8,1:9:3:22,3,0 ./. +chr4 648643 rs10902758 G A 5054.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.099;DB;DP=149;Dels=0.00;FS=4.620;HaplotypeScore=1.8174;MLEAC=8;MLEAF=1.00;MQ=36.58;MQ0=0;MQRankSum=0.565;QD=33.92;ReadPosRankSum=2.441;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,36:37:99:1381,108,0 1/1:7,33:40:33:1259,33,0 1/1:6,33:39:43:1203,43,0 1/1:2,31:33:93:1211,93,0 +chr4 656460 . T G 480.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.066;DP=61;Dels=0.00;FS=3.823;HaplotypeScore=6.1818;MLEAC=4;MLEAF=0.500;MQ=31.20;MQ0=0;MQRankSum=-0.437;QD=7.88;ReadPosRankSum=2.421;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:99:183,0,145 0/1:8,6:14:47:126,0,47 0/1:13,6:19:98:162,0,98 0/1:6,6:12:52:52,0,80 +chr4 660363 . A T 50.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.185;DP=95;Dels=0.00;FS=67.264;HaplotypeScore=3.2548;MLEAC=3;MLEAF=0.375;MQ=31.88;MQ0=0;MQRankSum=-2.477;QD=0.71;ReadPosRankSum=-0.524;SB=0.261 GT:AD:DP:GQ:PL 0/0:22,1:23:57:0,57,691 0/1:19,3:22:36:36,0,308 0/1:23,3:26:38:38,0,607 0/1:21,3:24:20:20,0,533 +chr4 676142 . G C 40.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.208;DP=39;Dels=0.00;FS=31.299;HaplotypeScore=1.9651;MLEAC=3;MLEAF=0.375;MQ=28.15;MQ0=0;MQRankSum=-0.671;QD=1.15;ReadPosRankSum=-0.027;SB=3.49 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,65 0/1:7,1:8:23:23,0,44 0/1:12,3:15:52:52,0,91 0/1:11,1:12:6:6,0,144 +chr4 731340 . G A 53.10 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.342;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.3812;MLEAC=1;MLEAF=0.125;MQ=27.61;MQ0=0;MQRankSum=-1.406;QD=2.41;ReadPosRankSum=0.679;SB=0.065 GT:AD:DP:GQ:PL 0/0:26,1:27:16:0,16,488 0/0:38,0:38:72:0,72,762 0/0:30,1:31:12:0,12,437 0/1:17,5:22:89:89,0,136 +chr4 843843 . A G 230.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.049;DP=31;Dels=0.00;FS=16.983;HaplotypeScore=2.5078;MLEAC=4;MLEAF=0.500;MQ=30.88;MQ0=0;MQRankSum=-1.293;QD=7.44;ReadPosRankSum=2.562;SB=-2.167e+00 GT:AD:DP:GQ:PL 0/1:2,3:5:31:95,0,31 0/1:5,4:9:56:56,0,69 0/1:6,4:10:99:108,0,125 0/1:6,1:7:14:14,0,142 +chr4 949133 . G T 58.89 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.986;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3723;MLEAC=4;MLEAF=0.500;MQ=32.37;MQ0=0;MQRankSum=-0.859;QD=1.44;ReadPosRankSum=0.859;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:20:20,0,71 0/1:10,1:11:13:13,0,138 0/1:9,3:12:52:52,0,164 0/1:7,1:8:16:16,0,51 +chr4 956373 . C G 199.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.374;DP=70;Dels=0.00;FS=54.414;HaplotypeScore=5.5774;MLEAC=3;MLEAF=0.375;MQ=30.96;MQ0=0;MQRankSum=-0.621;QD=4.00;ReadPosRankSum=1.252;SB=1.13 GT:AD:DP:GQ:PL 0/1:12,2:14:31:31,0,325 0/0:20,0:20:33:0,33,378 0/1:15,6:21:99:128,0,368 0/1:11,4:15:84:84,0,179 +chr4 961374 . A G 60.38 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.236;DP=56;Dels=0.04;FS=5.557;HaplotypeScore=6.9359;MLEAC=3;MLEAF=0.375;MQ=27.12;MQ0=0;MQRankSum=-0.195;QD=1.26;ReadPosRankSum=-1.431;SB=-3.380e-01 GT:AD:DP:GQ:PL 0/0:7,0:7:6:0,6,76 0/1:13,2:16:46:46,0,200 0/1:14,2:17:45:45,0,99 0/1:12,1:14:11:11,0,173 +chr4 983060 rs3796622 T C 553.93 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.966;DB;DP=29;Dels=0.03;FS=4.869;HaplotypeScore=0.1835;MLEAC=7;MLEAF=0.875;MQ=24.71;MQ0=0;MQRankSum=2.029;QD=19.10;ReadPosRankSum=-0.281;SB=-2.655e+02 GT:AD:DP:GQ:PL 1/1:0,5:5:12:135,12,0 0/1:2,1:3:21:32,0,21 1/1:2,10:12:27:289,27,0 1/1:2,6:8:15:142,15,0 +chr4 1087327 rs67353138 GAC G 304.03 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.836;DB;DP=51;FS=9.971;HaplotypeScore=44.4827;MLEAC=4;MLEAF=0.500;MQ=19.56;MQ0=0;MQRankSum=0.836;QD=5.96;ReadPosRankSum=0.836;SB=-1.516e+01 GT:AD:DP:GQ:PL 0/1:7,3:3:19:40,0,19 0/1:9,1:5:43:43,0,60 0/1:10,4:6:38:38,0,108 0/1:8,4:8:1:233,0,1 +chr4 1088767 . G A 38.27 . AC=5;AF=0.833;AN=6;BaseQRankSum=-0.815;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=4.4952;MLEAC=5;MLEAF=0.833;MQ=15.85;MQ0=0;MQRankSum=1.449;QD=1.74;ReadPosRankSum=-0.543;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,4:9:3:25,3,0 0/1:6,1:7:21:21,0,70 ./. 1/1:3,2:5:3:30,3,0 +chr4 1316051 . G C 72.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.564;DP=71;Dels=0.03;FS=8.120;HaplotypeScore=13.0870;MLEAC=3;MLEAF=0.375;MQ=22.58;MQ0=0;MQRankSum=-2.089;QD=1.40;ReadPosRankSum=2.351;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:53:53,0,147 0/1:10,4:14:23:23,0,55 0/0:16,3:19:18:0,18,167 0/1:17,3:20:40:40,0,169 +chr4 1377800 . G A 36.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.030;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.9611;MLEAC=2;MLEAF=0.250;MQ=31.22;MQ0=0;MQRankSum=-0.851;QD=2.05;ReadPosRankSum=-0.224;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,25 0/1:7,1:8:8:8,0,161 0/0:5,0:5:9:0,9,114 0/1:7,3:10:67:67,0,94 +chr4 1705447 rs2854911 C T 617.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.621;DB;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=1.3824;MLEAC=1;MLEAF=0.125;MQ=38.68;MQ0=0;MQRankSum=-4.906;QD=12.61;ReadPosRankSum=-0.751;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,21:48:99:654,0,846 0/0:45,0:45:99:0,126,1723 0/0:46,0:46:99:0,135,1812 0/0:30,0:30:84:0,84,1149 +chr4 1737115 . T C 200.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.386;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.1584;MLEAC=3;MLEAF=0.375;MQ=34.02;MQ0=0;MQRankSum=-2.877;QD=2.83;ReadPosRankSum=-0.008;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:83:83,0,386 0/1:19,4:23:83:83,0,346 0/1:23,4:28:78:78,0,472 0/0:17,1:18:30:0,30,379 +chr4 1746125 rs34848704 C CT 319.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.718;DB;DP=30;FS=0.000;HaplotypeScore=7.8488;MLEAC=3;MLEAF=0.375;MQ=26.14;MQ0=0;MQRankSum=0.869;QD=11.43;RPA=1,2;RU=T;ReadPosRankSum=-0.567;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:2,0:2:6:0,6,85 0/1:7,2:6:67:67,0,152 0/1:5,6:7:21:234,0,21 0/1:3,4:5:70:70,0,112 +chr4 1806298 . T G 63.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.236;DP=77;Dels=0.01;FS=2.436;HaplotypeScore=2.6067;MLEAC=2;MLEAF=0.250;MQ=25.61;MQ0=0;MQRankSum=-2.878;QD=1.67;ReadPosRankSum=0.773;SB=0.564 GT:AD:DP:GQ:PL 0/0:17,2:19:6:0,6,313 0/1:16,6:22:92:92,0,192 0/0:18,1:19:3:0,3,286 0/1:14,2:16:10:10,0,125 +chr4 1827333 . G C 291.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.444;DP=66;Dels=0.02;FS=19.495;HaplotypeScore=3.9011;MLEAC=4;MLEAF=0.500;MQ=25.18;MQ0=0;MQRankSum=1.151;QD=4.42;ReadPosRankSum=-0.788;SB=-1.182e+00 GT:AD:DP:GQ:PL 0/1:6,4:10:11:78,0,11 0/1:11,2:13:37:37,0,59 0/1:13,3:16:72:72,0,134 0/1:20,6:26:99:147,0,201 +chr4 1932322 . C T 76.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.957;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=3;MLEAF=0.375;MQ=35.78;MQ0=0;MQRankSum=-1.957;QD=1.90;ReadPosRankSum=-0.583;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,1:16:4:0,4,482 0/1:15,3:18:73:73,0,308 0/1:10,2:12:34:34,0,217 0/1:9,1:10:10:10,0,207 +chr4 1941325 . G T 30.06 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.635;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.3743;MLEAC=3;MLEAF=0.375;MQ=32.15;MQ0=0;MQRankSum=-1.959;QD=0.67;ReadPosRankSum=1.528;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:12:21:0,21,246 0/1:18,3:21:26:26,0,433 0/1:13,2:15:32:32,0,196 0/1:8,1:9:15:15,0,152 +chr4 1985537 . T A 55.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.875;DP=41;Dels=0.05;FS=0.000;HaplotypeScore=5.3814;MLEAC=3;MLEAF=0.375;MQ=23.42;MQ0=0;MQRankSum=1.325;QD=1.67;ReadPosRankSum=0.625;SB=-2.992e+01 GT:AD:DP:GQ:PL 0/0:8,0:8:15:0,15,157 0/1:6,1:7:16:16,0,59 0/1:12,4:16:62:62,0,130 0/1:7,1:8:20:20,0,74 +chr4 1991616 . G T 557.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.270;DP=123;Dels=0.00;FS=2.527;HaplotypeScore=0.7451;MLEAC=4;MLEAF=0.500;MQ=34.52;MQ0=0;MQRankSum=-3.022;QD=4.53;ReadPosRankSum=1.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,8:25:99:186,0,420 0/1:31,6:37:99:133,0,592 0/1:31,7:38:99:159,0,820 0/1:17,6:23:99:122,0,265 +chr4 2129765 . G C 59.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.346;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9824;MLEAC=3;MLEAF=0.375;MQ=32.14;MQ0=0;MQRankSum=-3.383;QD=0.81;ReadPosRankSum=0.546;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,4:31:41:41,0,279 0/1:25,3:29:29:29,0,374 0/0:28,1:29:5:0,5,308 0/1:11,2:13:31:31,0,118 +chr4 2172950 . C A 37.40 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.830;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=1.9675;MLEAC=1;MLEAF=0.125;MQ=31.43;MQ0=0;MQRankSum=-2.299;QD=1.25;ReadPosRankSum=0.125;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:30,2:32:9:0,9,617 0/0:25,0:25:39:0,39,460 0/1:25,5:30:73:73,0,597 0/0:13,1:14:7:0,7,353 +chr4 2178097 . A T 63.78 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.962;DP=67;Dels=0.04;FS=2.572;HaplotypeScore=15.3560;MLEAC=4;MLEAF=0.500;MQ=21.83;MQ0=0;MQRankSum=0.766;QD=0.95;ReadPosRankSum=1.905;SB=6.98 GT:AD:DP:GQ:PL 0/1:16,3:19:9:9,0,92 0/1:18,2:20:37:37,0,163 0/1:14,1:16:14:14,0,50 1/1:7,2:9:6:47,6,0 +chr4 2275889 . T G 132.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.083;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.9239;MLEAC=4;MLEAF=0.500;MQ=29.76;MQ0=0;MQRankSum=-2.393;QD=2.04;ReadPosRankSum=2.060;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:32:32,0,143 0/1:15,3:18:45:45,0,281 0/1:13,3:16:51:51,0,246 0/1:12,4:16:47:47,0,184 +chr4 2307135 . G A 54.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.936;DP=59;Dels=0.00;FS=10.745;HaplotypeScore=1.3346;MLEAC=4;MLEAF=0.500;MQ=26.95;MQ0=0;MQRankSum=-0.715;QD=0.92;ReadPosRankSum=0.624;SB=-7.444e-01 GT:AD:DP:GQ:PL 0/1:9,1:10:6:6,0,154 0/1:15,2:17:31:31,0,189 0/1:15,3:18:15:15,0,376 0/1:12,2:14:44:44,0,102 +chr4 2877667 rs191878690 G C 530.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.049;DB;DP=165;Dels=0.02;FS=101.303;HaplotypeScore=37.1695;MLEAC=3;MLEAF=0.375;MQ=27.85;MQ0=0;MQRankSum=-4.521;QD=4.50;ReadPosRankSum=5.645;SB=-1.051e-02 GT:AD:DP:GQ:PL 0/0:41,4:46:67:0,67,1058 0/1:28,16:44:99:229,0,570 0/1:31,14:45:99:141,0,366 0/1:16,11:27:99:204,0,242 +chr4 2900891 . T C 211.16 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.186;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.5729;MLEAC=5;MLEAF=0.625;MQ=23.08;MQ0=0;MQRankSum=1.818;QD=4.59;ReadPosRankSum=-0.026;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:25:25,0,30 0/1:8,1:9:16:16,0,41 0/1:11,4:15:79:88,0,79 1/1:3,4:7:12:127,12,0 +chr4 2930300 . C G 45.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.454;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=9.2027;MLEAC=2;MLEAF=0.250;MQ=26.54;MQ0=0;MQRankSum=-0.347;QD=1.48;ReadPosRankSum=-0.080;SB=19.87 GT:AD:DP:GQ:PL 0/0:12,0:14:21:0,21,254 0/1:15,3:19:69:69,0,112 0/0:13,0:15:24:0,24,258 0/1:10,1:11:18:18,0,59 +chr4 3005964 rs34857805 G A 1863.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.096;DB;DP=222;Dels=0.00;FS=10.219;HaplotypeScore=0.7494;MLEAC=3;MLEAF=0.375;MQ=42.30;MQ0=0;MQRankSum=-5.850;QD=12.18;ReadPosRankSum=-0.771;SB=-2.890e+02 GT:AD:DP:GQ:PL 0/1:36,20:56:99:635,0,1289 0/0:69,0:69:99:0,199,2801 0/1:48,22:70:99:689,0,1775 0/1:11,16:27:99:583,0,298 +chr4 3029588 rs2857844 G A 2073.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.125;DB;DP=124;Dels=0.00;FS=3.716;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=33.38;MQ0=0;MQRankSum=-1.555;QD=16.72;ReadPosRankSum=-0.159;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,12:32:99:326,0,632 1/1:3,33:37:56:1105,56,0 0/1:17,9:26:99:211,0,494 0/1:14,15:29:99:477,0,371 +chr4 3105581 . C A 80.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.220;DP=121;Dels=0.05;FS=3.427;HaplotypeScore=22.7386;MLEAC=2;MLEAF=0.250;MQ=29.53;MQ0=0;MQRankSum=-0.745;QD=1.88;ReadPosRankSum=-1.480;SB=-2.949e+01 GT:AD:DP:GQ:PL 0/0:27,1:29:3:0,3,237 0/1:26,2:28:40:40,0,248 0/0:43,0:45:57:0,57,590 0/1:8,5:13:81:81,0,152 +chr4 3144441 rs363107 A G 185.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.138;DB;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=0.7109;MLEAC=4;MLEAF=0.500;MQ=27.43;MQ0=0;MQRankSum=-0.635;QD=3.04;ReadPosRankSum=-0.529;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:39:39,0,173 0/1:13,7:20:84:84,0,342 0/1:15,4:19:90:90,0,177 0/1:6,1:7:15:15,0,108 +chr4 3148803 . G A 106.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.946;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.9686;MLEAC=2;MLEAF=0.250;MQ=37.07;MQ0=0;MQRankSum=-5.448;QD=1.37;ReadPosRankSum=3.251;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:38,5:43:55:55,0,857 0/1:29,6:35:93:93,0,578 0/0:29,1:30:38:0,38,713 0/0:20,2:22:27:0,27,512 +chr4 3180192 . C G 327.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.027;DP=140;Dels=0.00;FS=39.555;HaplotypeScore=4.8557;MLEAC=4;MLEAF=0.500;MQ=31.66;MQ0=0;MQRankSum=-3.321;QD=2.34;ReadPosRankSum=2.449;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:34,4:38:60:60,0,435 0/1:35,6:41:99:118,0,596 0/1:27,5:32:99:106,0,354 0/1:24,5:29:86:86,0,362 +chr4 3408934 rs1730769 G A 40.77 . AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.97;MQ0=0;QD=20.38;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:72,6,0 ./. ./. ./. +chr4 3475089 . C T 172.71 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.289;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=6.9333;MLEAC=5;MLEAF=0.625;MQ=22.06;MQ0=0;MQRankSum=1.162;QD=8.22;ReadPosRankSum=-2.500;SB=13.94 GT:AD:DP:GQ:PL 0/1:3,2:5:39:58,0,39 1/1:5,3:8:6:70,6,0 1/1:4,4:8:9:91,9,0 0/0:6,1:8:6:0,6,64 +chr4 3629822 rs12331089 G A 37.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=22.10;MQ0=0;MQRankSum=0.736;QD=12.34;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:38,3,0 ./. 1/1:1,1:2:3:32,3,0 ./. +chr4 3769789 rs73792664 G C 38.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.507;DB;DP=79;Dels=0.03;FS=2.477;HaplotypeScore=4.8419;MLEAC=3;MLEAF=0.375;MQ=24.45;MQ0=0;MQRankSum=-3.449;QD=0.64;ReadPosRankSum=1.551;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,5:17:38:38,0,309 0/0:15,3:18:21:0,21,242 0/1:15,4:19:8:8,0,164 0/1:19,4:23:35:35,0,374 +chr4 3944404 . A G 31.02 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.199;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.6653;MLEAC=4;MLEAF=0.667;MQ=15.64;MQ0=0;MQRankSum=2.059;QD=2.59;ReadPosRankSum=-0.863;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/0:8,0:8:6:0,6,67 1/1:5,1:6:3:44,3,0 1/1:5,1:6:3:26,3,0 +chr4 4131146 rs183984288 G A 174.78 . AC=4;AF=1.00;AN=4;DB;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.4789;MLEAC=4;MLEAF=1.00;MQ=13.70;MQ0=0;QD=7.60;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,9:10:6:56,6,0 1/1:0,13:13:15:154,15,0 +chr4 4199634 rs2916414 A T 2918.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.823;DB;DP=161;Dels=0.01;FS=1.664;HaplotypeScore=2.7697;MLEAC=8;MLEAF=1.00;MQ=25.32;MQ0=0;MQRankSum=2.491;QD=18.13;ReadPosRankSum=3.038;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:2,34:36:39:720,39,0 1/1:2,39:42:54:678,54,0 1/1:3,33:36:63:762,63,0 1/1:2,43:45:48:798,48,0 +chr4 4275287 rs2272740 C T 1097.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.572;DB;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7329;MLEAC=3;MLEAF=0.375;MQ=31.55;MQ0=0;MQRankSum=-3.600;QD=14.44;ReadPosRankSum=0.550;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,13:26:99:339,0,428 0/0:24,0:24:63:0,63,743 0/1:9,20:30:99:564,0,193 0/1:11,9:20:99:238,0,304 +chr4 4276475 rs2272739 C T 361.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.902;DB;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.9763;MLEAC=1;MLEAF=0.125;MQ=35.58;MQ0=0;MQRankSum=1.307;QD=9.05;ReadPosRankSum=1.171;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,111,1335 0/1:27,13:40:99:398,0,771 0/0:50,0:50:99:0,141,1730 0/0:38,0:38:93:0,93,1186 +chr4 4298599 rs2920174 G A 33.26 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.231;DB;DP=14;Dels=0.00;FS=3.090;HaplotypeScore=2.2415;MLEAC=3;MLEAF=0.750;MQ=14.93;MQ0=0;MQRankSum=1.231;QD=8.32;ReadPosRankSum=-1.231;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 0/0:3,0:3:3:0,3,29 1/1:2,2:4:6:68,6,0 +chr4 4896233 rs13118392 A G 147.96 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.018;DB;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=0.2892;MLEAC=4;MLEAF=0.500;MQ=19.95;MQ0=0;MQRankSum=1.640;QD=5.10;ReadPosRankSum=-0.126;SB=-5.926e+01 GT:AD:DP:GQ:PL 0/1:5,2:7:30:30,0,33 0/0:8,0:8:9:0,9,95 1/1:5,5:10:9:116,9,0 0/1:6,5:11:48:48,0,62 +chr4 5642199 . A G 369.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.786;DP=188;Dels=0.01;FS=0.000;HaplotypeScore=22.3763;MLEAC=2;MLEAF=0.250;MQ=27.63;MQ0=0;MQRankSum=-2.826;QD=3.80;ReadPosRankSum=3.846;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:37,13:50:99:201,0,889 0/0:57,1:58:99:0,150,1685 0/1:33,14:47:99:208,0,824 0/0:27,5:32:2:0,2,451 +chr4 5830263 . T G 173.26 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.110;DP=83;Dels=0.00;FS=87.813;HaplotypeScore=6.4608;MLEAC=4;MLEAF=0.500;MQ=29.82;MQ0=0;MQRankSum=-0.844;QD=2.09;ReadPosRankSum=2.136;SB=-3.419e+00 GT:AD:DP:GQ:PL 0/1:20,3:23:49:49,0,493 0/1:19,4:23:27:27,0,450 0/1:14,1:15:7:7,0,247 0/1:16,6:22:99:132,0,120 +chr4 6080808 . G C 55.24 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.296;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9077;MLEAC=2;MLEAF=0.250;MQ=33.04;MQ0=0;MQRankSum=0.165;QD=2.30;ReadPosRankSum=-1.909;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:61:61,0,186 0/1:11,2:13:35:35,0,209 0/0:13,0:13:24:0,24,301 0/0:8,0:8:6:0,6,84 +chr4 6302707 rs1801206 C T 1657.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.685;DB;DP=203;Dels=0.01;FS=25.276;HaplotypeScore=16.5532;MLEAC=4;MLEAF=0.500;MQ=37.16;MQ0=0;MQRankSum=-3.208;QD=11.35;ReadPosRankSum=0.749;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:7,35:43:44:1096,44,0 0/0:56,0:57:99:0,147,1915 0/1:41,16:58:99:398,0,1306 0/1:32,10:42:99:212,0,884 +chr4 6335375 . T C 285.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.335;DP=187;Dels=0.02;FS=14.565;HaplotypeScore=14.7915;MLEAC=4;MLEAF=0.500;MQ=32.37;MQ0=0;MQRankSum=-4.761;QD=1.53;ReadPosRankSum=4.974;SB=-1.248e-02 GT:AD:DP:GQ:PL 0/1:39,9:49:99:148,0,554 0/1:32,4:36:37:37,0,397 0/1:56,5:61:51:51,0,1020 0/1:31,6:37:92:92,0,426 +chr4 6374230 rs35520578 C CA 335.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.049;DB;DP=24;FS=1.913;HaplotypeScore=19.9812;MLEAC=4;MLEAF=0.500;MQ=25.83;MQ0=0;MQRankSum=0.049;QD=16.75;RPA=1,2;RU=A;ReadPosRankSum=1.025;SB=-1.173e+02;STR GT:AD:DP:GQ:PL 1/1:0,4:4:12:170,12,0 0/0:3,0:2:6:0,6,84 0/1:4,3:5:70:112,0,70 0/1:5,3:7:99:108,0,99 +chr4 6578372 . A C 482.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.535;DP=93;Dels=0.02;FS=175.977;HaplotypeScore=16.4921;MLEAC=4;MLEAF=0.500;MQ=25.08;MQ0=0;MQRankSum=-2.295;QD=5.19;ReadPosRankSum=4.486;SB=0.070 GT:AD:DP:GQ:PL 0/1:8,7:15:99:160,0,132 0/1:14,7:21:22:22,0,226 0/1:18,13:32:99:176,0,337 0/1:15,8:23:99:167,0,120 +chr4 6600012 rs2301790 A G 639.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.082;DB;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.3260;MLEAC=4;MLEAF=0.500;MQ=31.48;MQ0=0;MQRankSum=-0.831;QD=5.98;ReadPosRankSum=-0.263;SB=-1.900e+02 GT:AD:DP:GQ:PL 0/1:16,6:22:99:117,0,416 0/1:16,9:25:99:235,0,289 0/1:18,9:27:99:198,0,416 0/1:26,7:33:99:132,0,563 +chr4 7064003 rs11422620 A AC 571.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.057;DB;DP=42;FS=0.000;HaplotypeScore=11.5513;MLEAC=4;MLEAF=0.500;MQ=32.05;MQ0=0;MQRankSum=-0.294;QD=16.81;RPA=6,7;RU=C;ReadPosRankSum=-0.705;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:4,13:17:12:438,12,0 0/0:7,1:6:15:0,15,176 0/1:4,4:7:85:115,0,85 0/1:6,3:9:75:75,0,183 +chr4 7666131 . C A 61.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.364;DP=156;Dels=0.00;FS=82.833;HaplotypeScore=9.0245;MLEAC=3;MLEAF=0.375;MQ=33.66;MQ0=0;MQRankSum=-3.370;QD=0.51;ReadPosRankSum=3.059;SB=-7.336e-01 GT:AD:DP:GQ:PL 0/0:33,2:35:49:0,49,858 0/1:40,5:45:10:10,0,985 0/1:30,7:37:87:87,0,761 0/1:36,3:39:5:5,0,778 +chr4 7698890 rs78864358 C A 43.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.464;DB;DP=53;Dels=0.04;FS=3.667;HaplotypeScore=3.8550;MLEAC=3;MLEAF=0.375;MQ=22.18;MQ0=0;MQRankSum=-0.202;QD=1.03;ReadPosRankSum=-1.147;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,1:10:12:0,12,110 0/1:9,1:10:7:7,0,93 0/1:14,4:18:69:69,0,180 0/1:12,1:13:8:8,0,108 +chr4 7774715 . C G 50.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.611;DP=48;Dels=0.00;FS=7.759;HaplotypeScore=3.3891;MLEAC=3;MLEAF=0.375;MQ=23.31;MQ0=0;MQRankSum=0.208;QD=1.54;ReadPosRankSum=1.297;SB=1.07 GT:AD:DP:GQ:PL 0/1:8,2:10:41:41,0,114 0/1:12,1:13:22:22,0,68 0/0:14,1:15:21:0,21,227 0/1:6,4:10:31:31,0,159 +chr4 7873740 rs112678910 T G 428.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.488;DB;DP=325;Dels=0.00;FS=56.296;HaplotypeScore=1.3994;MLEAC=3;MLEAF=0.375;MQ=34.34;MQ0=0;MQRankSum=-0.315;QD=1.99;ReadPosRankSum=1.672;SB=0.783 GT:AD:DP:GQ:PL 0/1:73,8:81:99:120,0,1343 0/0:101,9:110:39:0,39,2841 0/1:86,18:105:99:275,0,2005 0/1:25,4:29:77:77,0,462 +chr4 8006928 rs11939078 C T 316.05 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.270;DB;DP=34;Dels=0.00;FS=5.711;HaplotypeScore=0.9311;MLEAC=3;MLEAF=0.375;MQ=30.20;MQ0=0;MQRankSum=0.787;QD=12.64;ReadPosRankSum=0.472;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:15:0,15,195 0/1:5,5:10:55:173,0,55 0/1:7,5:12:99:161,0,174 1/1:2,1:3:3:26,3,0 +chr4 8029465 . C A 268.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.309;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=2.1503;MLEAC=4;MLEAF=0.500;MQ=32.76;MQ0=0;MQRankSum=-2.640;QD=6.25;ReadPosRankSum=1.767;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,4:15:79:79,0,148 0/1:5,2:7:44:44,0,110 0/1:5,5:10:26:135,0,26 0/1:7,3:10:19:53,0,19 +chr4 8211530 . G A 44.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.456;DP=61;Dels=0.03;FS=2.350;HaplotypeScore=2.0133;MLEAC=2;MLEAF=0.250;MQ=30.74;MQ0=0;MQRankSum=-0.154;QD=1.44;ReadPosRankSum=-0.491;SB=-1.423e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:36:0,36,415 0/1:11,3:14:53:53,0,262 0/0:15,0:15:33:0,33,398 0/1:13,3:16:33:33,0,206 +chr4 8214503 . G C 91.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.315;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.2127;MLEAC=4;MLEAF=0.500;MQ=28.27;MQ0=0;MQRankSum=0.105;QD=1.80;ReadPosRankSum=0.189;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:42:42,0,72 0/1:11,2:13:35:35,0,134 0/1:16,2:18:28:28,0,135 0/1:8,2:10:29:29,0,81 +chr4 9177262 . G A 421.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.428;DP=88;Dels=0.00;FS=28.215;HaplotypeScore=1.7063;MLEAC=4;MLEAF=0.500;MQ=17.36;MQ0=0;MQRankSum=1.454;QD=4.79;ReadPosRankSum=-0.217;SB=1.47 GT:AD:DP:GQ:PL 0/1:12,10:22:73:148,0,73 0/1:10,3:13:14:51,0,14 0/1:14,8:22:16:90,0,16 0/1:17,14:31:59:175,0,59 +chr4 9177964 rs180962048 T G 33.01 . AC=4;AF=0.667;AN=6;BaseQRankSum=3.941;DB;DP=54;Dels=0.00;FS=8.059;HaplotypeScore=0.9038;MLEAC=4;MLEAF=0.667;MQ=13.63;MQ0=0;MQRankSum=3.677;QD=1.03;ReadPosRankSum=-0.022;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:14,3:17:6:44,6,0 0/0:12,3:15:3:0,3,35 1/1:14,1:15:3:28,3,0 +chr4 9773196 rs10939514 C T 540.36 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.354;DB;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=0.4168;MLEAC=8;MLEAF=1.00;MQ=17.53;MQ0=0;MQRankSum=2.305;QD=9.82;ReadPosRankSum=2.159;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,12:13:9:113,9,0 1/1:0,14:14:15:168,15,0 1/1:3,11:14:9:97,9,0 1/1:1,12:13:18:201,18,0 +chr4 9784650 . T C 68.03 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.180;DP=178;Dels=0.01;FS=87.097;HaplotypeScore=13.9958;MLEAC=4;MLEAF=0.500;MQ=10.98;MQ0=0;MQRankSum=3.542;QD=0.51;ReadPosRankSum=1.972;SB=0.928 GT:AD:DP:GQ:PL 0/0:43,2:45:6:0,6,55 1/1:45,4:49:6:70,6,0 0/1:41,3:44:31:31,0,126 0/1:36,3:39:11:11,0,55 +chr4 10257964 . C G 38.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.183;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.3943;MLEAC=2;MLEAF=0.250;MQ=34.50;MQ0=0;MQRankSum=-2.626;QD=1.62;ReadPosRankSum=-0.777;SB=-1.124e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:36:0,36,442 0/1:14,3:17:71:71,0,278 0/0:13,1:14:17:0,17,428 0/1:6,1:7:7:7,0,155 +chr4 10543621 . A T 126.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.140;DP=72;Dels=0.00;FS=26.420;HaplotypeScore=7.6517;MLEAC=4;MLEAF=0.500;MQ=27.43;MQ0=0;MQRankSum=-3.242;QD=1.76;ReadPosRankSum=3.176;SB=-4.464e-02 GT:AD:DP:GQ:PL 0/1:17,4:21:42:42,0,298 0/1:18,3:21:20:20,0,255 0/1:19,3:22:35:35,0,254 0/1:4,4:8:43:72,0,43 +chr4 11401026 . T G 36.24 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.912;DP=66;Dels=0.00;FS=6.377;HaplotypeScore=8.0069;MLEAC=4;MLEAF=0.500;MQ=32.81;MQ0=0;MQRankSum=-0.231;QD=0.55;ReadPosRankSum=-1.933;SB=-5.718e-01 GT:AD:DP:GQ:PL 0/1:21,2:23:33:33,0,440 0/1:11,1:13:20:20,0,193 0/1:15,2:19:8:8,0,389 0/1:9,2:11:17:17,0,137 +chr4 11756186 rs1388875 C G 49.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=4;MLEAF=1.00;MQ=21.13;MQ0=0;MQRankSum=1.231;QD=9.80;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:42,3,0 ./. 1/1:1,1:2:3:40,3,0 ./. +chr4 13602012 . A T 310.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.308;DP=194;Dels=0.02;FS=122.678;HaplotypeScore=23.5932;MLEAC=4;MLEAF=0.500;MQ=30.43;MQ0=0;MQRankSum=-3.235;QD=1.60;ReadPosRankSum=2.415;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:38,7:45:55:55,0,862 0/1:32,8:40:99:135,0,650 0/1:49,9:58:87:87,0,1158 0/1:38,9:47:76:76,0,880 +chr4 15556757 . A G 71 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.093;DP=147;Dels=0.00;FS=15.313;HaplotypeScore=19.6891;MLEAC=3;MLEAF=0.375;MQ=30.42;MQ0=0;MQRankSum=-1.146;QD=0.61;ReadPosRankSum=2.101;SB=-1.813e+00 GT:AD:DP:GQ:PL 0/1:26,4:30:46:46,0,399 0/1:35,4:39:63:63,0,316 0/1:43,2:47:2:2,0,539 0/0:30,1:31:11:0,11,365 +chr4 15985897 . T A 39.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.244;DP=142;Dels=0.02;FS=22.857;HaplotypeScore=10.8956;MLEAC=2;MLEAF=0.250;MQ=29.77;MQ0=0;MQRankSum=-4.359;QD=0.55;ReadPosRankSum=4.055;SB=1.84 GT:AD:DP:GQ:PL 0/0:34,5:39:21:0,21,764 0/1:33,6:40:72:72,0,564 0/0:28,3:31:22:0,22,448 0/1:24,5:29:6:6,0,408 +chr4 16008038 . C G 60.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.361;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.8159;MLEAC=4;MLEAF=0.500;MQ=21.77;MQ0=0;MQRankSum=0.876;QD=4.02;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:3:0,3,34 0/1:4,1:5:22:29,0,22 0/1:3,2:7:19:46,0,19 1/1:2,1:3:3:27,3,0 +chr4 16510204 . T A 212.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.058;DP=185;Dels=0.00;FS=46.932;HaplotypeScore=3.9516;MLEAC=2;MLEAF=0.250;MQ=35.67;MQ0=0;MQRankSum=-1.640;QD=2.12;ReadPosRankSum=-0.232;SB=-1.808e-01 GT:AD:DP:GQ:PL 0/0:39,2:41:45:0,45,938 0/0:42,2:44:9:0,9,851 0/1:53,4:57:21:21,0,1206 0/1:32,11:43:99:232,0,946 +chr4 16597280 rs1506462 T A 5089.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.767;DB;DP=158;Dels=0.00;FS=30.306;HaplotypeScore=1.0281;MLEAC=8;MLEAF=1.00;MQ=33.76;MQ0=0;MQRankSum=0.743;QD=32.21;ReadPosRankSum=2.014;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:6,34:40:99:1227,99,0 1/1:4,37:41:99:1374,111,0 1/1:2,43:45:99:1581,129,0 1/1:3,28:32:72:907,72,0 +chr4 17528399 . A C 102.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.490;DP=104;Dels=0.00;FS=2.547;HaplotypeScore=11.8325;MLEAC=2;MLEAF=0.250;MQ=22.83;MQ0=0;MQRankSum=1.610;QD=1.94;ReadPosRankSum=-0.443;SB=10.85 GT:AD:DP:GQ:PL 0/0:26,1:29:12:0,12,140 0/1:20,4:26:9:117,0,9 0/0:22,0:22:6:0,6,81 0/1:25,1:27:26:26,0,62 +chr4 17590671 rs17499929 G A 944.65 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.101;DB;DP=63;Dels=0.00;FS=32.203;HaplotypeScore=0.2333;MLEAC=7;MLEAF=0.875;MQ=24.69;MQ0=0;MQRankSum=1.436;QD=14.99;ReadPosRankSum=0.511;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,6:19:99:147,0,265 1/1:1,18:19:42:438,42,0 1/1:3,9:12:21:240,21,0 1/1:6,7:13:15:164,15,0 +chr4 17964624 . G C 61.58 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.172;DP=74;Dels=0.00;FS=40.680;HaplotypeScore=7.1651;MLEAC=1;MLEAF=0.125;MQ=29.66;MQ0=0;MQRankSum=-2.627;QD=1.99;ReadPosRankSum=0.402;SB=1.71 GT:AD:DP:GQ:PL 0/0:16,1:17:24:0,24,310 0/0:22,0:22:42:0,42,490 0/1:25,6:31:97:97,0,396 0/0:4,0:4:3:0,3,32 +chr4 24410367 rs79277175 C T 40.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=11;Dels=0.00;FS=7.782;HaplotypeScore=4.4038;MLEAC=2;MLEAF=1.00;MQ=15.43;MQ0=0;MQRankSum=0.736;QD=13.59;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,2:3:6:72,6,0 ./. +chr4 25260884 . A C 47.33 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.073;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.0297;MLEAC=3;MLEAF=0.375;MQ=30.83;MQ0=0;MQRankSum=-2.270;QD=0.91;ReadPosRankSum=-0.902;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,4:24:57:57,0,412 0/0:26,1:27:28:0,28,521 0/1:16,2:18:11:11,0,395 0/1:8,2:10:22:22,0,56 +chr4 25396573 . C G 148.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.435;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=4.5695;MLEAC=3;MLEAF=0.375;MQ=31.74;MQ0=0;MQRankSum=-2.258;QD=2.22;ReadPosRankSum=3.438;SB=-1.196e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:43:43,0,103 0/1:18,4:22:65:65,0,225 0/1:22,5:27:82:82,0,288 0/0:5,0:5:3:0,3,42 +chr4 25408724 rs28616687 A G 712.32 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.969;DB;DP=30;Dels=0.00;FS=36.767;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=28.65;MQ0=0;MQRankSum=3.105;QD=25.44;ReadPosRankSum=0.307;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,10:11:27:329,27,0 1/1:1,6:7:18:232,18,0 1/1:3,7:10:15:189,15,0 ./. +chr4 25677949 . G T 33.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.600;DP=227;Dels=0.01;FS=67.057;HaplotypeScore=13.9590;MLEAC=1;MLEAF=0.125;MQ=35.65;MQ0=0;MQRankSum=-2.404;QD=0.66;ReadPosRankSum=1.229;SB=-5.197e+00 GT:AD:DP:GQ:PL 0/0:47,1:48:91:0,91,1463 0/0:64,2:66:51:0,51,1409 0/0:57,4:61:16:0,16,1567 0/1:44,6:50:69:69,0,1014 +chr4 27209559 rs1488268 G T 3168.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.299;DB;DP=172;Dels=0.02;FS=2.804;HaplotypeScore=6.6402;MLEAC=5;MLEAF=0.625;MQ=35.00;MQ0=0;MQRankSum=-1.030;QD=18.42;ReadPosRankSum=1.342;SB=-1.366e+03 GT:AD:DP:GQ:PL 0/1:14,12:26:99:366,0,282 1/1:2,40:42:99:1458,114,0 0/1:28,27:55:99:820,0,799 0/1:27,19:46:99:570,0,661 +chr4 27586861 rs10006450 C T 406.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.384;DB;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.0841;MLEAC=3;MLEAF=0.375;MQ=35.30;MQ0=0;MQRankSum=-0.337;QD=13.56;ReadPosRankSum=1.756;SB=-1.460e+02 GT:AD:DP:GQ:PL 0/1:10,3:13:67:67,0,352 0/0:17,0:17:48:0,48,580 0/1:3,9:12:82:323,0,82 0/1:3,2:5:60:60,0,74 +chr4 36085012 . T G 31.94 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.840;DP=68;Dels=0.00;FS=48.312;HaplotypeScore=3.1589;MLEAC=2;MLEAF=0.250;MQ=31.01;MQ0=0;MQRankSum=-1.618;QD=1.39;ReadPosRankSum=-1.799;SB=-2.331e+00 GT:AD:DP:GQ:PL 0/1:13,3:17:55:55,0,364 0/0:20,2:23:4:0,4,606 0/0:21,1:22:15:0,15,457 0/1:5,1:6:17:17,0,131 +chr4 36179423 . T C 143.40 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.077;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=13.7225;MLEAC=3;MLEAF=0.500;MQ=25.50;MQ0=0;MQRankSum=-3.339;QD=1.73;ReadPosRankSum=3.871;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,5:29:15:15,0,338 0/1:15,9:24:99:127,0,195 0/1:23,4:28:40:40,0,260 ./. +chr4 37446267 . A C 98.70 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.467;DP=227;Dels=0.00;FS=68.232;HaplotypeScore=10.3266;MLEAC=2;MLEAF=0.250;MQ=32.77;MQ0=0;MQRankSum=-1.146;QD=0.96;ReadPosRankSum=1.491;SB=-5.131e+00 GT:AD:DP:GQ:PL 0/1:50,4:54:5:5,0,1291 0/0:52,3:55:3:0,3,1160 0/0:62,5:69:32:0,32,1748 0/1:42,7:49:99:131,0,899 +chr4 37447487 . T A 618.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-8.657;DP=331;Dels=0.00;FS=148.009;HaplotypeScore=3.9481;MLEAC=4;MLEAF=0.500;MQ=34.74;MQ0=0;MQRankSum=-6.150;QD=1.87;ReadPosRankSum=4.118;SB=-1.903e-02 GT:AD:DP:GQ:PL 0/1:80,10:90:27:27,0,2146 0/1:83,14:97:99:191,0,2632 0/1:68,17:85:99:301,0,2051 0/1:48,10:58:99:142,0,1273 +chr4 38019961 . G T 45.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.700;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.7728;MLEAC=2;MLEAF=0.250;MQ=24.87;MQ0=0;MQRankSum=-1.380;QD=3.00;ReadPosRankSum=1.125;SB=0.030 GT:AD:DP:GQ:PL 0/1:8,3:11:56:56,0,104 0/0:19,1:20:24:0,24,276 0/0:21,1:22:12:0,12,145 1/1:3,1:4:3:32,3,0 +chr4 38774785 rs10776482 A G 166 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.654;DB;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6579;MLEAC=1;MLEAF=0.125;MQ=30.51;MQ0=0;MQRankSum=-1.485;QD=5.35;ReadPosRankSum=-0.290;SB=-8.500e+01 GT:AD:DP:GQ:PL 0/0:24,0:24:60:0,60,655 0/1:21,10:31:99:202,0,434 0/0:35,1:36:99:0,99,1177 0/0:8,0:8:21:0,21,273 +chr4 38937316 . CT C 114.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.472;DP=70;FS=0.000;HaplotypeScore=22.0778;MLEAC=3;MLEAF=0.375;MQ=22.76;MQ0=0;MQRankSum=-1.247;QD=2.05;RPA=12,11;RU=T;ReadPosRankSum=-2.007;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:13,1:9:20:0,20,162 0/1:16,5:16:94:110,0,94 0/1:12,5:12:24:24,0,75 0/1:11,3:9:33:33,0,65 +chr4 39344237 rs6812588 C T 119.51 . AC=4;AF=1.00;AN=4;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=24.73;MQ0=0;QD=19.92;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:70,6,0 ./. 1/1:0,2:2:6:84,6,0 ./. +chr4 39447979 . T G 305.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.720;DP=101;Dels=0.00;FS=20.509;HaplotypeScore=6.9949;MLEAC=4;MLEAF=0.500;MQ=33.03;MQ0=0;MQRankSum=-1.870;QD=3.03;ReadPosRankSum=0.256;SB=-3.881e-02 GT:AD:DP:GQ:PL 0/1:17,6:23:99:174,0,262 0/1:28,7:36:99:106,0,611 0/1:19,3:22:48:48,0,406 0/1:18,2:20:20:20,0,455 +chr4 39448891 . T C 115.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.731;DP=133;Dels=0.02;FS=34.599;HaplotypeScore=6.6875;MLEAC=4;MLEAF=0.500;MQ=32.07;MQ0=0;MQRankSum=-1.227;QD=0.87;ReadPosRankSum=1.764;SB=-9.758e-02 GT:AD:DP:GQ:PL 0/1:28,4:32:56:56,0,593 0/1:28,3:31:21:21,0,604 0/1:26,3:29:18:18,0,572 0/1:34,5:39:63:63,0,733 +chr4 39459154 rs2608830 G A 606.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.142;DB;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.4114;MLEAC=2;MLEAF=0.250;MQ=34.84;MQ0=0;MQRankSum=1.284;QD=10.11;ReadPosRankSum=1.559;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,11:33:99:381,0,395 0/1:18,8:27:99:267,0,425 0/0:29,0:30:54:0,54,642 0/0:24,0:24:42:0,42,538 +chr4 39466851 . A C 280.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.712;DP=173;Dels=0.01;FS=110.602;HaplotypeScore=9.8075;MLEAC=4;MLEAF=0.500;MQ=35.48;MQ0=0;MQRankSum=-3.058;QD=1.62;ReadPosRankSum=0.788;SB=-1.503e-02 GT:AD:DP:GQ:PL 0/1:46,6:52:53:53,0,1308 0/1:42,4:46:32:32,0,1016 0/1:30,9:40:99:202,0,795 0/1:30,4:34:36:36,0,936 +chr4 39512347 rs11544855 T C 1315.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.831;DB;DP=166;Dels=0.01;FS=8.017;HaplotypeScore=2.7029;MLEAC=3;MLEAF=0.375;MQ=35.87;MQ0=0;MQRankSum=-1.518;QD=11.54;ReadPosRankSum=1.291;SB=-4.790e+02 GT:AD:DP:GQ:PL 0/1:24,17:41:99:577,0,570 0/0:51,0:52:99:0,114,1494 0/1:30,17:47:99:510,0,827 0/1:14,11:25:99:272,0,359 +chr4 40022041 rs6838749 A G 213.55 . AC=4;AF=1.00;AN=4;BaseQRankSum=2.262;DB;DP=15;Dels=0.00;FS=2.515;HaplotypeScore=0.8609;MLEAC=4;MLEAF=1.00;MQ=22.78;MQ0=0;MQRankSum=1.931;QD=19.41;ReadPosRankSum=0.978;SB=-7.245e+01 GT:AD:DP:GQ:PL 1/1:2,4:6:9:106,9,0 ./. 1/1:1,4:5:12:143,12,0 ./. +chr4 40045487 . A T 49.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.512;DP=86;Dels=0.03;FS=60.111;HaplotypeScore=2.1899;MLEAC=2;MLEAF=0.250;MQ=14.75;MQ0=0;MQRankSum=0.297;QD=1.13;ReadPosRankSum=-0.918;SB=5.89 GT:AD:DP:GQ:PL 0/1:15,4:19:37:37,0,68 0/1:20,4:24:53:53,0,88 0/0:16,2:18:6:0,6,64 0/0:18,4:22:9:0,9,81 +chr4 40121472 . A C 52.48 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.791;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=10.6718;MLEAC=3;MLEAF=0.500;MQ=25.35;MQ0=0;MQRankSum=-0.264;QD=1.94;ReadPosRankSum=0.685;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:34:34,0,107 0/1:7,2:9:44:44,0,61 0/1:7,1:8:13:13,0,45 ./. +chr4 40133622 . A C 98.66 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.732;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4609;MLEAC=5;MLEAF=0.625;MQ=26.97;MQ0=0;MQRankSum=0.317;QD=1.57;ReadPosRankSum=0.610;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:18:18,0,93 0/1:16,3:20:72:72,0,84 0/1:19,2:21:29:29,0,74 1/1:5,1:6:3:22,3,0 +chr4 40143799 rs794003 G T 116 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.256;DB;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.1082;MLEAC=6;MLEAF=0.750;MQ=15.38;MQ0=0;MQRankSum=0.128;QD=5.80;ReadPosRankSum=0.638;SB=-2.883e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:49,6,0 0/0:3,2:5:3:0,3,22 0/1:3,4:7:15:60,0,15 1/1:1,6:7:6:51,6,0 +chr4 40810663 rs4861066 A G 3382.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.034;DB;DP=280;Dels=0.00;FS=11.016;HaplotypeScore=2.7181;MLEAC=4;MLEAF=0.500;MQ=37.89;MQ0=0;MQRankSum=-7.188;QD=17.99;ReadPosRankSum=2.116;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,48:51:99:1810,144,0 0/0:92,0:92:99:0,256,3483 0/1:45,24:69:99:720,0,1508 0/1:38,30:68:99:852,0,1175 +chr4 41628679 . T A 41.44 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.367;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=15.1808;MLEAC=3;MLEAF=0.500;MQ=19.45;MQ0=0;MQRankSum=-0.033;QD=1.12;ReadPosRankSum=1.767;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:13:14:14,0,59 0/1:12,3:15:29:29,0,111 0/1:6,2:8:37:37,0,44 ./. +chr4 41635603 . C G 900.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.168;DP=145;Dels=0.00;FS=91.115;HaplotypeScore=2.6372;MLEAC=4;MLEAF=0.500;MQ=31.33;MQ0=0;MQRankSum=1.041;QD=6.21;ReadPosRankSum=1.725;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,13:38:99:336,0,404 0/1:33,5:38:99:114,0,452 0/1:28,9:37:99:226,0,456 0/1:22,10:32:99:267,0,373 +chr4 43032462 . A G 298.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.664;DP=246;Dels=0.00;FS=47.395;HaplotypeScore=32.6293;MLEAC=4;MLEAF=0.500;MQ=26.58;MQ0=0;MQRankSum=1.740;QD=1.21;ReadPosRankSum=3.433;SB=-1.013e+00 GT:AD:DP:GQ:PL 0/1:63,5:68:35:35,0,869 0/1:59,6:67:99:101,0,479 0/1:63,8:71:99:149,0,619 0/1:34,4:39:56:56,0,396 +chr4 43900842 rs4694838 G C 865.18 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.729;DB;DP=26;Dels=0.00;FS=20.348;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=36.29;MQ0=0;MQRankSum=2.729;QD=33.28;ReadPosRankSum=0.321;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,10:12:30:388,30,0 1/1:0,5:5:15:188,15,0 1/1:1,4:5:12:170,12,0 1/1:0,4:4:12:158,12,0 +chr4 43901081 . G A 126.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.851;DP=170;Dels=0.00;FS=66.256;HaplotypeScore=3.6618;MLEAC=4;MLEAF=0.500;MQ=16.19;MQ0=0;MQRankSum=4.034;QD=0.74;ReadPosRankSum=2.019;SB=-2.924e+00 GT:AD:DP:GQ:PL 0/1:40,4:44:81:81,0,91 0/1:40,1:41:28:28,0,63 0/1:41,5:46:54:54,0,123 0/1:37,2:39:5:5,0,142 +chr4 46066479 . A T 46.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.514;DP=163;Dels=0.00;FS=29.944;HaplotypeScore=3.5891;MLEAC=2;MLEAF=0.250;MQ=33.87;MQ0=0;MQRankSum=-3.140;QD=0.78;ReadPosRankSum=-2.865;SB=-8.936e-01 GT:AD:DP:GQ:PL 0/0:39,2:41:14:0,14,842 0/1:44,7:51:53:53,0,1210 0/0:58,4:62:33:0,33,1327 0/1:7,2:9:35:35,0,197 +chr4 46263864 rs10938435 T TA 696.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.037;DB;DP=46;FS=0.000;HaplotypeScore=39.8377;MLEAC=6;MLEAF=0.750;MQ=27.79;MQ0=0;MQRankSum=-1.659;QD=15.13;ReadPosRankSum=0.357;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:9,2:9:41:41,0,242 0/1:6,4:8:17:218,0,17 1/1:6,14:15:28:411,28,0 1/1:1,3:2:6:80,6,0 +chr4 48076094 rs41265725 T G 466.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.329;DB;DP=82;Dels=0.00;FS=7.228;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=37.91;MQ0=0;MQRankSum=-1.949;QD=8.19;ReadPosRankSum=-0.049;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,975 0/1:19,12:31:99:343,0,682 0/1:16,6:22:97:97,0,473 0/1:2,2:4:69:70,0,69 +chr4 48158761 . A C 1402.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.944;DP=206;Dels=0.00;FS=5.271;HaplotypeScore=5.2117;MLEAC=4;MLEAF=0.500;MQ=35.03;MQ0=0;MQRankSum=-5.731;QD=6.81;ReadPosRankSum=6.235;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:47,18:66:99:492,0,753 0/1:38,19:58:99:506,0,746 0/1:47,14:61:99:330,0,967 0/1:15,5:20:99:117,0,285 +chr4 49009125 . T G 92.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.017;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.3541;MLEAC=3;MLEAF=0.375;MQ=25.76;MQ0=0;MQRankSum=-1.617;QD=1.86;ReadPosRankSum=-1.850;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:69:69,0,100 0/1:10,2:13:36:36,0,131 0/1:20,3:23:30:30,0,295 0/0:3,0:3:6:0,6,50 +chr4 49491501 . T C 38.31 . AC=3;AF=0.500;AN=6;BaseQRankSum=-2.118;DP=76;Dels=0.03;FS=25.406;HaplotypeScore=8.1936;MLEAC=3;MLEAF=0.500;MQ=15.06;MQ0=0;MQRankSum=2.485;QD=0.56;ReadPosRankSum=-2.485;SB=0.986 GT:AD:DP:GQ:PL 0/1:24,1:26:31:31,0,39 0/1:13,1:14:24:24,0,79 0/1:27,1:28:22:22,0,79 ./. +chr4 52743877 . T A 32.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.531;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.9451;MLEAC=3;MLEAF=0.375;MQ=24.28;MQ0=0;MQRankSum=-0.706;QD=0.44;ReadPosRankSum=1.498;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,6:31:56:56,0,332 0/0:34,0:34:51:0,51,502 0/1:28,2:31:12:12,0,301 0/1:10,1:11:5:5,0,146 +chr4 52777322 . T G 91.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.184;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.4578;MLEAC=2;MLEAF=0.250;MQ=27.87;MQ0=0;MQRankSum=-0.640;QD=1.61;ReadPosRankSum=1.231;SB=2.539e-03 GT:AD:DP:GQ:PL 0/0:38,1:39:23:0,23,491 0/0:44,1:46:35:0,35,587 0/1:33,6:39:99:100,0,504 0/1:16,2:18:33:33,0,198 +chr4 52844469 . T C 45.74 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.910;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.0903;MLEAC=2;MLEAF=0.333;MQ=26.74;MQ0=0;MQRankSum=2.243;QD=2.69;ReadPosRankSum=-0.910;SB=-3.905e+00 GT:AD:DP:GQ:PL ./. 0/1:4,3:7:13:71,0,13 0/1:9,1:10:11:11,0,93 0/0:2,0:2:3:0,3,25 +chr4 52945799 rs7689145 C T 1395.14 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.299;DB;DP=47;Dels=0.04;FS=16.021;HaplotypeScore=0.8158;MLEAC=8;MLEAF=1.00;MQ=33.79;MQ0=0;MQRankSum=1.646;QD=29.68;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,14:16:42:541,42,0 1/1:2,10:12:27:355,27,0 1/1:1,12:13:33:435,33,0 1/1:1,3:4:9:103,9,0 +chr4 55569949 . G C 66.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.616;DP=140;Dels=0.04;FS=51.665;HaplotypeScore=7.9757;MLEAC=3;MLEAF=0.375;MQ=35.95;MQ0=0;MQRankSum=-5.441;QD=0.51;ReadPosRankSum=1.333;SB=8.78 GT:AD:DP:GQ:PL 0/1:30,4:34:39:39,0,680 0/1:33,6:39:51:51,0,924 0/1:46,7:53:19:19,0,1258 0/0:8,0:9:15:0,15,199 +chr4 55604837 . C A 191.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.565;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1159;MLEAC=4;MLEAF=0.500;MQ=32.69;MQ0=0;MQRankSum=-2.942;QD=2.95;ReadPosRankSum=1.615;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,5:22:83:83,0,473 0/1:9,4:13:95:95,0,214 0/1:16,3:19:42:42,0,354 0/1:10,1:11:14:14,0,168 +chr4 56283969 . G T 69.26 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.753;DP=40;Dels=0.03;FS=10.098;HaplotypeScore=3.4676;MLEAC=2;MLEAF=0.333;MQ=21.19;MQ0=0;MQRankSum=-1.275;QD=3.01;ReadPosRankSum=1.448;SB=0.189 GT:AD:DP:GQ:PL 0/1:3,2:5:26:26,0,27 0/0:11,1:12:6:0,6,69 0/1:9,8:18:79:81,0,79 ./. +chr4 56428639 . T G 31.88 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.286;DP=165;Dels=0.00;FS=18.872;HaplotypeScore=14.5206;MLEAC=2;MLEAF=0.250;MQ=30.76;MQ0=0;MQRankSum=-1.732;QD=0.31;ReadPosRankSum=-1.924;SB=-2.774e+00 GT:AD:DP:GQ:PL 0/1:44,5:49:48:48,0,1045 0/1:48,6:54:24:24,0,1245 0/0:46,5:51:3:0,3,1053 0/0:10,1:11:21:0,21,257 +chr4 57181779 . A G 183.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.497;DP=127;Dels=0.02;FS=48.241;HaplotypeScore=42.7677;MLEAC=3;MLEAF=0.375;MQ=23.40;MQ0=0;MQRankSum=-1.780;QD=2.07;ReadPosRankSum=2.604;SB=-6.051e+00 GT:AD:DP:GQ:PL 0/1:24,6:31:47:47,0,249 0/0:35,3:38:16:0,16,395 0/1:17,8:25:99:142,0,119 0/1:26,5:31:38:38,0,410 +chr4 57182032 . A C 241.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.962;DP=106;Dels=0.02;FS=28.773;HaplotypeScore=14.1317;MLEAC=3;MLEAF=0.375;MQ=28.26;MQ0=0;MQRankSum=1.664;QD=2.95;ReadPosRankSum=0.440;SB=0.089 GT:AD:DP:GQ:PL 0/0:20,1:23:4:0,4,317 0/1:27,4:31:72:72,0,363 0/1:13,7:21:99:184,0,149 0/1:27,2:29:27:27,0,309 +chr4 57194589 . T A 125.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.436;DP=321;Dels=0.00;FS=0.000;HaplotypeScore=3.4660;MLEAC=2;MLEAF=0.250;MQ=37.60;MQ0=0;MQRankSum=-4.167;QD=0.85;ReadPosRankSum=-0.302;SB=-2.848e-03 GT:AD:DP:GQ:PL 0/1:72,11:83:99:145,0,1753 0/0:98,3:101:99:0,176,3211 0/0:67,5:72:25:0,25,1870 0/1:59,6:65:22:22,0,1502 +chr4 57335986 . T G 31.03 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.176;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=13.2973;MLEAC=2;MLEAF=0.250;MQ=23.69;MQ0=0;MQRankSum=0.728;QD=0.89;ReadPosRankSum=0.828;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:32:32,0,81 0/1:14,3:17:39:39,0,147 0/0:14,0:14:12:0,12,109 0/0:5,0:5:3:0,3,25 +chr4 57459503 rs114763852 G A 336.91 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.924;DB;DP=75;Dels=0.01;FS=83.172;HaplotypeScore=4.5159;MLEAC=4;MLEAF=0.500;MQ=19.12;MQ0=0;MQRankSum=4.410;QD=4.49;ReadPosRankSum=-1.146;SB=3.55 GT:AD:DP:GQ:PL 0/1:7,3:10:45:45,0,53 0/1:14,5:19:49:87,0,49 0/1:13,8:21:8:153,0,8 0/1:19,5:24:37:94,0,37 +chr4 57798189 rs2227901 G A 1277.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.649;DB;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=35.80;MQ0=0;MQRankSum=-3.983;QD=12.29;ReadPosRankSum=-0.005;SB=-5.570e+02 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,108,1415 0/1:17,20:37:99:624,0,525 0/1:25,17:42:99:478,0,790 0/1:17,8:25:99:219,0,535 +chr4 63376345 . A G 34.50 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.135;DP=133;Dels=0.00;FS=2.352;HaplotypeScore=2.4570;MLEAC=3;MLEAF=0.375;MQ=13.57;MQ0=0;MQRankSum=1.882;QD=0.30;ReadPosRankSum=0.648;SB=23.85 GT:AD:DP:GQ:PL 0/1:31,2:33:19:19,0,90 1/1:43,1:45:3:33,3,0 0/1:33,2:36:24:24,0,73 0/0:19,0:19:3:0,3,34 +chr4 66233192 . T C 183.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.165;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.1962;MLEAC=2;MLEAF=0.250;MQ=33.22;MQ0=0;MQRankSum=-1.482;QD=5.25;ReadPosRankSum=0.087;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,8:25:99:206,0,283 0/0:29,0:29:63:0,63,802 0/0:31,0:31:66:0,66,854 0/1:9,1:10:19:19,0,132 +chr4 68928740 rs1837215 G A 1784.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.471;DB;DP=219;Dels=0.00;FS=0.528;HaplotypeScore=1.7434;MLEAC=5;MLEAF=0.625;MQ=21.39;MQ0=0;MQRankSum=2.490;QD=8.15;ReadPosRankSum=1.746;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:3,59:62:80:1156,80,0 0/1:40,20:60:99:181,0,447 0/1:44,26:70:99:333,0,373 0/1:17,10:27:99:160,0,121 +chr4 68934306 rs10004522 G A,C 90.81 . AC=3,1;AF=0.375,0.125;AN=8;BaseQRankSum=1.150;DB;DP=38;Dels=0.00;FS=26.527;HaplotypeScore=6.8103;MLEAC=3,1;MLEAF=0.375,0.125;MQ=26.18;MQ0=0;MQRankSum=2.044;QD=3.24;ReadPosRankSum=0.767;SB=-1.455e+01 GT:AD:DP:GQ:PL 1/2:2,1,3:6:33:84,45,42,39,0,33 0/1:13,1,0:14:17:17,0,181,38,184,223 0/0:10,0,0:10:9:0,9,110,9,110,110 0/1:6,2,0:8:68:68,0,107,77,113,190 +chr4 68938163 . A T 197.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.150;DP=137;Dels=0.00;FS=113.293;HaplotypeScore=0.6403;MLEAC=3;MLEAF=0.375;MQ=37.86;MQ0=0;MQRankSum=1.224;QD=1.55;ReadPosRankSum=2.266;SB=2.22 GT:AD:DP:GQ:PL 0/1:37,6:43:99:122,0,852 0/1:36,5:41:48:48,0,959 0/1:39,5:44:71:71,0,1042 0/0:9,0:9:24:0,24,307 +chr4 68956498 rs13115830 C T 619.68 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.042;DB;DP=26;Dels=0.04;FS=7.597;HaplotypeScore=0.4988;MLEAC=8;MLEAF=1.00;MQ=27.24;MQ0=0;MQRankSum=3.042;QD=23.83;ReadPosRankSum=-2.149;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,7:8:21:249,21,0 1/1:2,7:9:21:253,21,0 1/1:1,4:5:12:121,12,0 1/1:2,1:3:3:35,3,0 +chr4 69148268 . G T 38.11 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.765;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=1.7807;MLEAC=3;MLEAF=0.375;MQ=17.46;MQ0=0;MQRankSum=2.407;QD=0.75;ReadPosRankSum=-2.889;SB=-1.585e+01 GT:AD:DP:GQ:PL 0/0:18,0:18:9:0,9,128 0/1:16,3:19:17:45,0,17 0/1:26,1:27:10:10,0,188 1/1:4,1:5:3:26,3,0 +chr4 69327752 rs142098345 T C 561.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.147;DB;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=1.4877;MLEAC=1;MLEAF=0.125;MQ=40.56;MQ0=0;MQRankSum=-3.992;QD=7.02;ReadPosRankSum=0.378;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:109,0:109:99:0,325,4353 0/1:58,22:80:99:598,0,1895 0/0:104,0:104:99:0,304,4154 0/0:37,0:37:99:0,105,1403 +chr4 69332537 rs139167045 G A 567.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.278;DB;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=0.2474;MLEAC=1;MLEAF=0.125;MQ=36.18;MQ0=0;MQRankSum=-2.842;QD=8.35;ReadPosRankSum=0.270;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:46,22:68:99:604,0,1408 0/0:97,0:97:99:0,280,3595 0/0:95,0:95:99:0,286,3700 0/0:32,0:32:90:0,90,1095 +chr4 69434329 . T G 136.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.936;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.2052;MLEAC=3;MLEAF=0.375;MQ=20.02;MQ0=0;MQRankSum=0.923;QD=2.67;ReadPosRankSum=2.308;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,3:27:18:0,18,184 0/1:17,5:23:73:73,0,125 0/1:14,5:20:71:92,0,71 0/1:6,2:8:14:14,0,83 +chr4 69780634 rs116599047 C G 1366.90 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.962;DB;DP=78;Dels=0.00;FS=26.294;HaplotypeScore=0.8995;MLEAC=8;MLEAF=1.00;MQ=23.71;MQ0=0;MQRankSum=0.946;QD=17.52;ReadPosRankSum=0.897;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,16:19:5:275,0,5 1/1:2,26:28:57:602,57,0 1/1:2,20:22:39:407,39,0 1/1:3,6:9:12:124,12,0 +chr4 69962719 . G A 421.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.900;DP=215;Dels=0.00;FS=60.571;HaplotypeScore=4.9618;MLEAC=4;MLEAF=0.500;MQ=22.07;MQ0=0;MQRankSum=4.488;QD=1.96;ReadPosRankSum=1.617;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:58,7:65:99:126,0,221 0/1:60,7:67:99:127,0,316 0/1:58,10:68:99:192,0,287 0/1:13,1:14:19:19,0,50 +chr4 70355211 rs1845555 T C 748.32 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.261;DB;DP=180;Dels=0.00;FS=11.843;HaplotypeScore=3.6388;MLEAC=8;MLEAF=1.00;MQ=13.08;MQ0=0;MQRankSum=2.081;QD=4.16;ReadPosRankSum=2.522;SB=-2.518e+02 GT:AD:DP:GQ:PL 1/1:3,43:47:18:204,18,0 1/1:2,54:56:27:270,27,0 1/1:2,49:51:21:237,21,0 1/1:3,23:26:6:76,6,0 +chr4 70807747 rs62305467 T C 190.24 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.788;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.1765;MLEAC=3;MLEAF=0.500;MQ=25.74;MQ0=0;MQRankSum=1.635;QD=19.02;ReadPosRankSum=1.309;SB=-9.545e+01 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,44 1/1:1,6:7:18:206,18,0 0/1:2,1:3:27:27,0,57 ./. +chr4 71232701 rs6853742 C T 1091.64 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.218;DB;DP=135;Dels=0.02;FS=0.746;HaplotypeScore=3.8129;MLEAC=5;MLEAF=0.625;MQ=25.13;MQ0=0;MQRankSum=1.029;QD=8.09;ReadPosRankSum=1.619;SB=-3.151e+02 GT:AD:DP:GQ:PL 0/1:26,17:43:99:376,0,290 1/1:1,27:28:21:566,21,0 0/1:27,10:37:99:147,0,332 0/1:20,4:24:48:48,0,195 +chr4 71657059 . A T 99.98 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.750;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.8579;MLEAC=2;MLEAF=0.250;MQ=25.34;MQ0=0;MQRankSum=-2.636;QD=2.33;ReadPosRankSum=1.700;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,7:21:58:58,0,282 0/0:15,3:18:4:0,4,297 0/1:18,4:22:82:82,0,182 0/0:5,1:6:9:0,9,100 +chr4 71670184 . C T 46.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.082;DP=77;Dels=0.03;FS=0.000;HaplotypeScore=5.0911;MLEAC=3;MLEAF=0.375;MQ=26.74;MQ0=0;MQRankSum=1.290;QD=0.80;ReadPosRankSum=-0.069;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:7:7,0,210 0/1:13,2:15:34:34,0,266 0/0:18,1:19:13:0,13,375 0/1:23,3:26:47:47,0,233 +chr4 71698132 . T A 241.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.584;DP=297;Dels=0.00;FS=35.578;HaplotypeScore=3.8011;MLEAC=4;MLEAF=0.500;MQ=38.23;MQ0=0;MQRankSum=-4.659;QD=0.81;ReadPosRankSum=4.133;SB=-2.808e-01 GT:AD:DP:GQ:PL 0/1:79,11:90:99:133,0,1788 0/1:79,6:86:14:14,0,1767 0/1:84,10:94:99:123,0,1824 0/1:25,2:27:14:14,0,503 +chr4 72411967 rs4694097 A G 1589.02 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.999;DB;DP=48;Dels=0.00;FS=13.118;HaplotypeScore=0.2416;MLEAC=8;MLEAF=1.00;MQ=37.49;MQ0=0;MQRankSum=2.330;QD=33.10;ReadPosRankSum=-0.757;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,13:16:39:544,39,0 1/1:3,10:13:30:421,30,0 1/1:2,11:13:33:450,33,0 1/1:1,5:6:15:213,15,0 +chr4 73433122 rs141865701 GA G 414.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.534;DB;DP=61;FS=1.574;HaplotypeScore=8.3686;MLEAC=4;MLEAF=0.500;MQ=31.93;MQ0=0;MQRankSum=-0.467;QD=6.80;RPA=3,2;RU=A;ReadPosRankSum=0.267;SB=-1.358e+02;STR GT:AD:DP:GQ:PL 0/1:8,6:15:99:202,0,282 0/1:17,6:19:99:190,0,390 0/1:14,2:13:45:45,0,371 0/1:5,1:5:29:29,0,110 +chr4 73792752 . C G 42.10 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.957;DP=173;Dels=0.01;FS=60.881;HaplotypeScore=11.2299;MLEAC=2;MLEAF=0.250;MQ=14.42;MQ0=0;MQRankSum=2.430;QD=0.52;ReadPosRankSum=-1.510;SB=-7.360e-02 GT:AD:DP:GQ:PL 0/0:53,1:54:2:0,2,272 0/1:41,3:44:51:51,0,156 0/0:36,2:38:24:0,24,229 0/1:33,2:35:31:31,0,33 +chr4 74315794 . G C 94.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.006;DP=66;Dels=0.02;FS=30.972;HaplotypeScore=2.1949;MLEAC=3;MLEAF=0.375;MQ=33.16;MQ0=0;MQRankSum=-3.091;QD=1.96;ReadPosRankSum=1.829;SB=-1.072e+00 GT:AD:DP:GQ:PL 0/1:13,5:18:99:116,0,307 0/0:17,1:18:17:0,17,463 0/1:19,3:22:4:4,0,429 0/1:6,1:7:15:15,0,138 +chr4 74347297 rs9995810 C T 43.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.40;MQ0=0;MQRankSum=1.026;QD=10.94;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,2:4:6:75,6,0 ./. ./. +chr4 75174327 . A G 56.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.080;DP=72;Dels=0.04;FS=0.000;HaplotypeScore=15.0044;MLEAC=4;MLEAF=0.500;MQ=24.53;MQ0=0;MQRankSum=-0.609;QD=0.79;ReadPosRankSum=-0.530;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,1:17:20:20,0,72 0/1:18,4:23:25:25,0,164 0/1:19,2:21:35:35,0,187 0/1:7,1:8:17:19,0,17 +chr4 75680932 . A T 68.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.094;DP=73;Dels=0.01;FS=2.387;HaplotypeScore=1.3896;MLEAC=3;MLEAF=0.375;MQ=33.26;MQ0=0;MQRankSum=0.846;QD=1.20;ReadPosRankSum=0.913;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,3:17:41:41,0,265 0/1:17,3:20:63:63,0,402 0/1:18,2:20:6:6,0,383 0/0:15,0:15:15:0,15,179 +chr4 75858444 . CGG C 147.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.631;DP=51;FS=0.000;HaplotypeScore=21.0263;MLEAC=2;MLEAF=0.250;MQ=29.48;MQ0=0;MQRankSum=-0.152;QD=5.91;ReadPosRankSum=-2.938;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/0:6,0:8:12:0,12,180 0/0:15,0:13:27:0,27,423 0/1:11,5:19:99:178,0,395 0/1:2,2:3:20:20,0,42 +chr4 76721414 rs13145290 C G 1150.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.608;DB;DP=70;Dels=0.00;FS=3.490;HaplotypeScore=0.4833;MLEAC=5;MLEAF=0.625;MQ=36.33;MQ0=0;MQRankSum=-3.020;QD=16.44;ReadPosRankSum=-0.145;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,8:21:99:226,0,374 1/1:1,19:20:57:696,57,0 0/1:13,6:19:99:156,0,395 0/1:6,4:10:99:118,0,219 +chr4 76794345 rs6858658 T G 3133.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.793;DB;DP=162;Dels=0.02;FS=18.877;HaplotypeScore=7.0452;MLEAC=8;MLEAF=1.00;MQ=34.01;MQ0=0;MQRankSum=1.846;QD=19.35;ReadPosRankSum=2.232;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:18,23:41:34:808,34,0 1/1:16,26:43:78:984,78,0 1/1:23,20:43:40:727,40,0 1/1:13,19:32:29:654,29,0 +chr4 76797337 rs57801776 A AAGAG 896.82 . AC=7;AF=0.875;AN=8;BaseQRankSum=-1.735;DB;DP=35;FS=0.000;HaplotypeScore=6.2759;MLEAC=7;MLEAF=0.875;MQ=17.32;MQ0=0;MQRankSum=-0.714;QD=25.62;RPA=2,4;RU=AG;ReadPosRankSum=0.102;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:3,5:4:12:226,12,0 1/1:5,4:6:15:306,15,0 1/1:5,6:7:18:381,18,0 0/1:3,3:2:36:37,0,36 +chr4 77274242 rs12504985 T C 1536.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.828;DB;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.2297;MLEAC=5;MLEAF=0.625;MQ=33.79;MQ0=0;MQRankSum=1.899;QD=16.01;ReadPosRankSum=1.322;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:6,17:23:51:667,51,0 0/1:15,14:29:99:441,0,336 0/1:20,9:29:99:236,0,553 0/1:8,7:15:99:238,0,200 +chr4 77660731 rs344141 C G 615.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.861;DB;DP=290;Dels=0.00;FS=0.850;HaplotypeScore=3.2258;MLEAC=1;MLEAF=0.125;MQ=40.88;MQ0=0;MQRankSum=-2.476;QD=9.48;ReadPosRankSum=0.335;SB=-2.720e+02 GT:AD:DP:GQ:PL 0/1:43,22:65:99:652,0,1534 0/0:66,0:66:99:0,196,2628 0/0:90,0:90:99:0,265,3669 0/0:68,0:69:99:0,196,2567 +chr4 77662568 . T A 55.78 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.776;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.4836;MLEAC=4;MLEAF=0.500;MQ=34.68;MQ0=0;MQRankSum=0.061;QD=2.79;ReadPosRankSum=1.408;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:41:41,0,60 0/1:3,1:4:14:14,0,54 0/1:3,1:4:24:24,0,73 0/1:5,1:6:19:19,0,71 +chr4 77692124 . G T 35.59 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.277;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=8.9494;MLEAC=3;MLEAF=0.375;MQ=25.33;MQ0=0;MQRankSum=0.012;QD=0.56;ReadPosRankSum=0.864;SB=0.026 GT:AD:DP:GQ:PL 0/0:15,0:17:21:0,21,210 0/1:14,3:17:32:32,0,169 0/1:24,3:27:37:37,0,369 0/1:16,2:18:9:9,0,133 +chr4 78694368 . T A 149.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.222;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1990;MLEAC=3;MLEAF=0.375;MQ=24.51;MQ0=0;MQRankSum=1.600;QD=3.47;ReadPosRankSum=0.902;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,3:17:83:83,0,141 0/1:14,3:17:70:70,0,82 0/0:24,1:25:5:0,5,235 0/1:7,2:9:22:38,0,22 +chr4 79102723 . G C 114.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.483;DP=134;Dels=0.00;FS=43.254;HaplotypeScore=10.6610;MLEAC=3;MLEAF=0.375;MQ=15.64;MQ0=0;MQRankSum=2.886;QD=1.18;ReadPosRankSum=0.217;SB=0.901 GT:AD:DP:GQ:PL 0/1:28,2:30:35:35,0,88 0/1:39,3:42:70:74,0,70 0/0:35,2:37:6:0,6,76 0/1:20,5:25:48:48,0,55 +chr4 79238448 rs345515 T C 1983.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=5.110;DB;DP=84;Dels=0.00;FS=27.134;HaplotypeScore=3.5110;MLEAC=7;MLEAF=0.875;MQ=31.01;MQ0=0;MQRankSum=0.374;QD=23.61;ReadPosRankSum=0.513;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,8:20:99:196,0,266 1/1:4,14:18:39:488,39,0 1/1:2,22:24:63:715,63,0 1/1:4,18:22:51:629,51,0 +chr4 79385511 . A C 31.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.169;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=3.4181;MLEAC=1;MLEAF=0.125;MQ=32.88;MQ0=0;MQRankSum=-0.685;QD=0.63;ReadPosRankSum=-0.825;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:44,5:49:67:67,0,965 0/0:37,2:39:15:0,15,832 0/0:60,3:63:56:0,56,1396 0/0:40,0:40:78:0,78,960 +chr4 79398875 . T G 85.28 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.959;DP=48;Dels=0.00;FS=2.542;HaplotypeScore=0.9258;MLEAC=2;MLEAF=0.250;MQ=30.08;MQ0=0;MQRankSum=-0.233;QD=2.84;ReadPosRankSum=0.959;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,228 0/1:10,2:12:37:37,0,64 0/0:10,0:10:6:0,6,69 0/1:14,4:18:89:89,0,154 +chr4 79429793 . A C 670.24 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.725;DP=64;Dels=0.02;FS=13.822;HaplotypeScore=19.2242;MLEAC=6;MLEAF=0.750;MQ=21.72;MQ0=0;MQRankSum=0.874;QD=10.47;ReadPosRankSum=1.120;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:7,12:21:24:237,24,0 1/1:6,10:16:15:150,15,0 0/1:4,12:16:14:202,0,14 0/1:3,7:10:23:127,0,23 +chr4 79443774 rs931604 T A 3044.14 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.333;DB;DP=92;Dels=0.03;FS=0.000;HaplotypeScore=1.2236;MLEAC=8;MLEAF=1.00;MQ=37.43;MQ0=0;MQRankSum=0.601;QD=33.09;ReadPosRankSum=2.391;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:9:470,9,0 1/1:0,23:24:69:909,69,0 1/1:2,31:33:93:1177,93,0 1/1:3,14:17:23:527,23,0 +chr4 79461751 . C A 90.99 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.717;DP=167;Dels=0.01;FS=43.250;HaplotypeScore=13.9784;MLEAC=2;MLEAF=0.250;MQ=31.44;MQ0=0;MQRankSum=0.113;QD=0.99;ReadPosRankSum=-1.447;SB=-2.209e+00 GT:AD:DP:GQ:PL 0/1:39,6:45:96:96,0,888 0/0:42,2:47:8:0,8,765 0/1:43,3:46:36:36,0,743 0/0:26,0:27:51:0,51,622 +chr4 80977078 rs4594664 T G 597.59 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.208;DB;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.2499;MLEAC=5;MLEAF=0.625;MQ=36.63;MQ0=0;MQRankSum=-1.398;QD=9.96;ReadPosRankSum=0.819;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,7:19:99:206,0,385 0/1:11,5:16:99:145,0,343 0/1:16,8:24:99:248,0,487 1/1:0,1:1:3:41,3,0 +chr4 81002230 rs2867697 G A 50.19 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.825;DB;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=1.2330;MLEAC=1;MLEAF=0.125;MQ=19.86;MQ0=0;MQRankSum=0.178;QD=1.86;ReadPosRankSum=-0.697;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/0:22,0:22:15:0,15,179 0/1:17,9:26:86:86,0,276 0/0:27,0:27:39:0,39,405 0/0:9,0:9:9:0,9,97 +chr4 82088283 . T A 53.75 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.510;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=5.2453;MLEAC=5;MLEAF=0.625;MQ=26.75;MQ0=0;MQRankSum=0.671;QD=0.84;ReadPosRankSum=-0.349;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:32:32,0,135 0/1:20,1:21:22:22,0,87 0/1:17,1:18:13:13,0,108 1/1:5,1:6:3:29,3,0 +chr4 83570251 rs4459983 A G 45.77 . AC=2;AF=1.00;AN=2;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.34;MQ0=0;QD=22.88;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:0,2:2:6:77,6,0 +chr4 83774949 . C T 91.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.209;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.2500;MLEAC=3;MLEAF=0.375;MQ=37.55;MQ0=0;MQRankSum=-2.391;QD=2.46;ReadPosRankSum=1.120;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:69:69,0,199 0/1:11,1:12:13:13,0,157 0/1:8,3:11:50:50,0,170 0/0:1,0:1:3:0,3,42 +chr4 83791416 . T A 512.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.239;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.0838;MLEAC=4;MLEAF=0.500;MQ=29.52;MQ0=0;MQRankSum=-1.988;QD=4.17;ReadPosRankSum=1.988;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:34,6:41:99:99,0,267 0/1:23,8:31:99:138,0,365 0/1:26,11:37:99:216,0,234 0/1:10,4:14:88:102,0,88 +chr4 83793243 rs4693525 A C 1835.79 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.044;DB;DP=78;Dels=0.00;FS=14.082;HaplotypeScore=1.1560;MLEAC=7;MLEAF=0.875;MQ=31.11;MQ0=0;MQRankSum=-0.561;QD=23.54;ReadPosRankSum=0.735;SB=-1.990e+02 GT:AD:DP:GQ:PL 0/1:14,10:24:99:263,0,359 1/1:0,24:24:69:806,69,0 1/1:3,14:17:42:493,42,0 1/1:2,11:13:3:317,3,0 +chr4 83795820 . C A 689.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.442;DP=105;Dels=0.02;FS=102.800;HaplotypeScore=14.7088;MLEAC=4;MLEAF=0.500;MQ=23.79;MQ0=0;MQRankSum=0.372;QD=6.57;ReadPosRankSum=2.839;SB=1.33 GT:AD:DP:GQ:PL 0/1:17,8:26:92:195,0,92 0/1:19,12:31:99:255,0,184 0/1:14,8:23:99:101,0,191 0/1:14,9:23:99:181,0,117 +chr4 83891420 . G C 75.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.450;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=21.8704;MLEAC=3;MLEAF=0.375;MQ=22.44;MQ0=0;MQRankSum=-1.672;QD=1.08;ReadPosRankSum=2.133;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,9:29:86:86,0,172 0/1:19,4:23:4:4,0,146 0/1:14,3:18:26:26,0,178 0/0:2,0:2:6:0,6,59 +chr4 83905884 . A T 383.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.974;DP=204;Dels=0.00;FS=130.132;HaplotypeScore=3.1827;MLEAC=4;MLEAF=0.500;MQ=37.30;MQ0=0;MQRankSum=-5.341;QD=2.14;ReadPosRankSum=3.408;SB=-2.123e+00 GT:AD:DP:GQ:PL 0/1:43,12:55:99:252,0,1228 0/1:48,7:55:54:54,0,1493 0/1:58,11:69:99:118,0,1542 0/0:23,2:25:1:0,1,599 +chr4 83989575 . T C 421.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.692;DP=76;Dels=0.00;FS=6.307;HaplotypeScore=3.5435;MLEAC=4;MLEAF=0.500;MQ=25.70;MQ0=0;MQRankSum=0.223;QD=5.55;ReadPosRankSum=2.820;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,7:21:17:103,0,17 0/1:24,3:27:60:60,0,261 0/1:12,9:21:46:172,0,46 0/1:2,5:7:14:129,0,14 +chr4 84339254 . C G 114.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.771;DP=285;Dels=0.00;FS=110.951;HaplotypeScore=1.7399;MLEAC=3;MLEAF=0.375;MQ=38.55;MQ0=0;MQRankSum=-2.831;QD=0.62;ReadPosRankSum=-0.263;SB=-2.628e+00 GT:AD:DP:GQ:PL 0/1:61,8:69:96:96,0,1704 0/1:84,7:91:1:1,0,2445 0/0:95,6:101:44:0,44,2891 0/1:20,4:24:57:57,0,507 +chr4 84367153 . G T 69.13 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.806;DP=50;Dels=0.04;FS=2.737;HaplotypeScore=15.6185;MLEAC=3;MLEAF=0.375;MQ=22.72;MQ0=0;MQRankSum=-0.774;QD=2.30;ReadPosRankSum=-1.585;SB=12.50 GT:AD:DP:GQ:PL 0/1:10,3:13:67:67,0,121 0/0:19,0:20:15:0,15,131 0/1:9,2:11:22:22,0,56 1/1:3,1:4:3:24,3,0 +chr4 84509466 . C G 349.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.805;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=28.6396;MLEAC=4;MLEAF=0.500;MQ=36.41;MQ0=0;MQRankSum=0.981;QD=2.89;ReadPosRankSum=-3.580;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,6:38:99:117,0,1091 0/1:24,6:31:99:170,0,785 0/1:23,4:27:82:82,0,759 0/1:22,3:25:23:23,0,588 +chr4 85166037 . T C 126.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.094;DP=39;Dels=0.00;FS=32.926;HaplotypeScore=5.7038;MLEAC=3;MLEAF=0.375;MQ=26.22;MQ0=0;MQRankSum=0.638;QD=3.95;ReadPosRankSum=0.866;SB=-4.670e-01 GT:AD:DP:GQ:PL 0/0:7,0:7:12:0,12,115 0/1:10,4:14:99:105,0,128 0/1:8,1:10:14:14,0,117 0/1:6,2:8:50:50,0,65 +chr4 85630112 . G T 54.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.162;DP=118;Dels=0.01;FS=30.310;HaplotypeScore=5.0832;MLEAC=2;MLEAF=0.250;MQ=31.69;MQ0=0;MQRankSum=-0.736;QD=1.31;ReadPosRankSum=1.204;SB=-5.345e-01 GT:AD:DP:GQ:PL 0/1:24,4:28:79:79,0,445 0/0:31,1:32:26:0,26,494 0/0:42,1:44:36:0,36,733 0/1:12,1:13:17:17,0,95 +chr4 85634318 . T A 304.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.194;DP=291;Dels=0.00;FS=175.158;HaplotypeScore=3.4436;MLEAC=2;MLEAF=0.250;MQ=36.43;MQ0=0;MQRankSum=-5.750;QD=2.36;ReadPosRankSum=-1.308;SB=-9.958e-01 GT:AD:DP:GQ:PL 0/0:69,2:71:99:0,123,2120 0/1:69,13:83:99:207,0,1923 0/0:86,5:91:21:0,21,1931 0/1:38,8:46:99:139,0,893 +chr4 85661387 . T A 361.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.867;DP=178;Dels=0.00;FS=34.638;HaplotypeScore=0.9107;MLEAC=3;MLEAF=0.375;MQ=39.18;MQ0=0;MQRankSum=-4.135;QD=2.66;ReadPosRankSum=1.686;SB=1.08 GT:AD:DP:GQ:PL 0/0:39,3:42:20:0,20,1091 0/1:38,9:48:99:190,0,1023 0/1:44,6:50:42:42,0,1251 0/1:30,8:38:99:173,0,608 +chr4 85699579 rs12502409 A G 779.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.982;DB;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=1.4851;MLEAC=4;MLEAF=0.500;MQ=31.27;MQ0=0;MQRankSum=-0.056;QD=10.83;ReadPosRankSum=-0.167;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,8:17:99:223,0,158 0/1:12,8:20:99:239,0,280 0/1:15,10:25:99:286,0,379 0/1:5,4:9:74:74,0,138 +chr4 85699789 . T G 450.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.486;DP=103;Dels=0.01;FS=6.209;HaplotypeScore=10.9361;MLEAC=4;MLEAF=0.500;MQ=27.18;MQ0=0;MQRankSum=-1.314;QD=4.37;ReadPosRankSum=1.148;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,7:29:90:179,0,90 0/1:28,7:35:99:134,0,141 0/1:24,6:30:99:139,0,215 0/1:6,2:8:24:41,0,24 +chr4 85771013 . T TC 351.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.526;DP=76;FS=0.000;HaplotypeScore=60.3416;MLEAC=4;MLEAF=0.500;MQ=21.82;MQ0=0;MQRankSum=1.074;QD=4.62;RPA=1,2;RU=C;ReadPosRankSum=-1.866;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:15,2:13:19:19,0,126 0/1:15,9:15:21:275,0,21 0/1:17,2:11:99:101,0,108 0/1:6,2:2:7:7,0,11 +chr4 86167605 . T G 37.34 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.537;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.1599;MLEAC=5;MLEAF=0.833;MQ=13.76;MQ0=0;MQRankSum=0.988;QD=4.67;ReadPosRankSum=1.537;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:24,3,0 1/1:0,1:1:3:32,3,0 ./. 0/1:3,1:4:19:19,0,20 +chr4 86852246 . C A 94.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.051;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=2.8143;MLEAC=3;MLEAF=0.375;MQ=25.05;MQ0=0;MQRankSum=0.118;QD=1.65;ReadPosRankSum=2.239;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,6:22:99:102,0,136 0/1:16,1:17:27:27,0,62 0/1:15,2:17:5:5,0,104 0/0:6,0:6:3:0,3,26 +chr4 87834762 rs2594276 T C 838.08 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.133;DB;DP=47;Dels=0.04;FS=0.000;HaplotypeScore=0.5784;MLEAC=8;MLEAF=1.00;MQ=22.60;MQ0=0;MQRankSum=2.006;QD=17.83;ReadPosRankSum=0.350;SB=-3.736e+02 GT:AD:DP:GQ:PL 1/1:0,9:9:24:257,24,0 1/1:2,7:10:21:222,21,0 1/1:1,13:14:24:266,24,0 1/1:3,8:12:12:132,12,0 +chr4 88035588 . C T 100.63 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.787;DP=43;Dels=0.00;FS=29.323;HaplotypeScore=10.8079;MLEAC=3;MLEAF=0.375;MQ=24.93;MQ0=0;MQRankSum=-2.405;QD=2.65;ReadPosRankSum=-0.427;SB=-4.870e+00 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,24 0/1:6,3:9:42:42,0,106 0/1:14,4:18:91:91,0,163 0/1:7,4:11:8:8,0,126 +chr4 88534235 rs2736982 A G 1590.34 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.822;DB;DP=114;Dels=0.01;FS=0.757;HaplotypeScore=1.8813;MLEAC=4;MLEAF=0.500;MQ=34.77;MQ0=0;MQRankSum=-0.688;QD=13.95;ReadPosRankSum=0.895;SB=-5.737e+02 GT:AD:DP:GQ:PL 0/1:4,18:22:0:605,0,0 0/1:18,14:32:99:424,0,555 0/1:28,13:41:99:391,0,836 0/1:11,7:18:99:211,0,333 +chr4 88732746 rs13144371 A G 1829.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.167;DB;DP=151;Dels=0.00;FS=15.307;HaplotypeScore=2.1375;MLEAC=4;MLEAF=0.500;MQ=34.55;MQ0=0;MQRankSum=-3.964;QD=16.48;ReadPosRankSum=1.802;SB=-5.070e+02 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,108,1462 1/1:5,32:37:40:1052,40,0 0/1:22,12:34:99:297,0,696 0/1:22,18:40:99:529,0,536 +chr4 88904140 . T C 64.41 . AC=1;AF=0.167;AN=6;BaseQRankSum=-2.169;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9874;MLEAC=1;MLEAF=0.167;MQ=32.85;MQ0=0;MQRankSum=-2.169;QD=7.16;ReadPosRankSum=1.183;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:12:0,12,162 0/1:5,4:9:77:99,0,77 0/0:8,1:9:15:0,15,161 ./. +chr4 89430969 . A T 45.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.126;DP=38;Dels=0.00;FS=5.479;HaplotypeScore=1.0213;MLEAC=3;MLEAF=0.375;MQ=26.74;MQ0=0;MQRankSum=0.202;QD=1.55;ReadPosRankSum=0.202;SB=0.427 GT:AD:DP:GQ:PL 0/1:8,2:10:40:40,0,120 0/0:9,0:9:15:0,15,177 0/1:11,2:13:28:28,0,111 0/1:5,1:6:20:20,0,68 +chr4 89442864 . A T 215.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.031;DP=114;Dels=0.01;FS=45.355;HaplotypeScore=4.8027;MLEAC=4;MLEAF=0.500;MQ=22.72;MQ0=0;MQRankSum=2.331;QD=1.89;ReadPosRankSum=0.081;SB=3.383e-04 GT:AD:DP:GQ:PL 0/1:24,6:30:99:103,0,176 0/1:24,4:30:84:84,0,165 0/1:31,3:34:36:36,0,181 0/1:17,2:19:35:35,0,67 +chr4 89711673 . T A 216.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.920;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=5.6628;MLEAC=3;MLEAF=0.375;MQ=22.91;MQ0=0;MQRankSum=0.865;QD=1.89;ReadPosRankSum=0.417;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,8:43:99:131,0,429 0/0:35,3:38:33:0,33,355 0/1:44,3:48:49:49,0,270 0/1:18,4:22:80:80,0,150 +chr4 90169816 . A C 69.20 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.920;DP=224;Dels=0.00;FS=34.982;HaplotypeScore=4.8213;MLEAC=1;MLEAF=0.125;MQ=36.96;MQ0=0;MQRankSum=1.476;QD=1.28;ReadPosRankSum=-1.656;SB=-6.591e+00 GT:AD:DP:GQ:PL 0/0:54,4:59:14:0,14,1501 0/0:56,4:60:9:0,9,1634 0/0:47,3:51:31:0,31,1372 0/1:48,6:54:99:105,0,1138 +chr4 95206252 rs111828975 TTATC T 2279.53 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.272;DB;DP=118;FS=0.000;HaplotypeScore=40.9132;MLEAC=5;MLEAF=0.625;MQ=30.17;MQ0=0;MQRankSum=-2.799;QD=19.32;ReadPosRankSum=1.675;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:26,6:27:99:548,0,838 1/1:17,16:32:57:1382,57,0 0/1:31,5:36:99:377,0,1348 0/1:15,1:14:27:27,0,846 +chr4 95507643 rs41275683 G A 647.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.376;DB;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=3.8766;MLEAC=1;MLEAF=0.125;MQ=35.88;MQ0=0;MQRankSum=-1.963;QD=13.22;ReadPosRankSum=-1.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,22:49:99:684,0,734 0/0:73,0:74:99:0,211,2786 0/0:67,0:67:99:0,190,2369 0/0:23,0:23:60:0,60,720 +chr4 95561664 . T G 393.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.416;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=15.3642;MLEAC=4;MLEAF=0.500;MQ=26.62;MQ0=0;MQRankSum=-2.394;QD=4.86;ReadPosRankSum=1.475;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,2:19:12:12,0,201 0/1:14,10:24:84:213,0,84 0/1:11,10:21:93:147,0,93 0/1:14,3:17:64:64,0,195 +chr4 96073956 rs1365691 A T 1813.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.239;DB;DP=63;Dels=0.00;FS=18.955;HaplotypeScore=0.5325;MLEAC=8;MLEAF=1.00;MQ=33.80;MQ0=0;MQRankSum=3.283;QD=28.79;ReadPosRankSum=0.354;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:4,13:17:39:478,39,0 1/1:0,16:17:48:596,48,0 1/1:3,10:13:30:377,30,0 1/1:6,10:16:30:402,30,0 +chr4 96124117 . TG T 187.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.585;DP=69;FS=0.000;HaplotypeScore=20.7121;MLEAC=3;MLEAF=0.375;MQ=19.17;MQ0=0;MQRankSum=-0.031;QD=3.48;RPA=5,4;RU=G;ReadPosRankSum=-1.077;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:9,4:7:18:112,0,18 0/1:11,8:6:8:98,0,8 0/1:15,3:10:28:28,0,143 0/0:11,3:6:4:0,4,69 +chr4 96127896 . C T 50.66 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.172;DP=102;Dels=0.02;FS=4.693;HaplotypeScore=9.2112;MLEAC=3;MLEAF=0.375;MQ=25.57;MQ0=0;MQRankSum=-1.859;QD=0.63;ReadPosRankSum=-0.107;SB=-7.310e-01 GT:AD:DP:GQ:PL 0/0:21,1:22:42:0,42,453 0/1:26,3:30:9:9,0,462 0/1:19,5:24:66:66,0,315 0/1:21,3:24:18:18,0,292 +chr4 98893398 . A C 105.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.444;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7319;MLEAC=2;MLEAF=0.250;MQ=30.64;MQ0=0;MQRankSum=-0.093;QD=1.88;ReadPosRankSum=2.298;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:40,1:41:63:0,63,971 0/1:36,7:43:99:136,0,599 0/0:43,1:44:78:0,78,864 0/1:12,1:13:9:9,0,154 +chr4 99064379 rs4699605 A G 156 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.405;DB;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=33.84;MQ0=0;MQRankSum=0.848;QD=12.00;ReadPosRankSum=-2.027;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:12:0,12,137 0/1:3,5:8:95:175,0,95 0/1:4,1:5:22:22,0,131 0/0:4,0:4:12:0,12,146 +chr4 99355147 . A T 106.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.228;DP=105;Dels=0.01;FS=113.106;HaplotypeScore=13.6153;MLEAC=3;MLEAF=0.375;MQ=31.20;MQ0=0;MQRankSum=-3.037;QD=1.08;ReadPosRankSum=3.047;SB=-2.941e+00 GT:AD:DP:GQ:PL 0/1:27,3:30:3:3,0,541 0/1:27,8:35:99:113,0,762 0/1:28,5:33:31:31,0,520 0/0:5,1:6:9:0,9,118 +chr4 100129685 rs3857224 C T 325.78 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.348;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.2655;MLEAC=3;MLEAF=0.375;MQ=33.48;MQ0=0;MQRankSum=-1.043;QD=18.10;ReadPosRankSum=-0.579;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:9:0,9,123 1/1:2,7:9:21:256,21,0 0/1:5,4:9:99:117,0,184 0/0:4,0:5:6:0,6,70 +chr4 100131609 . A C 737.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.605;DP=180;Dels=0.01;FS=163.416;HaplotypeScore=1.4617;MLEAC=4;MLEAF=0.500;MQ=36.29;MQ0=0;MQRankSum=-3.347;QD=4.10;ReadPosRankSum=2.407;SB=-1.160e-02 GT:AD:DP:GQ:PL 0/1:40,7:47:99:124,0,946 0/1:42,11:53:99:224,0,1247 0/1:45,15:60:99:288,0,1240 0/1:13,6:19:99:144,0,341 +chr4 100200509 rs3819197 C T 43.46 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.258;DB;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.2500;MLEAC=1;MLEAF=0.125;MQ=17.20;MQ0=0;MQRankSum=1.597;QD=3.34;ReadPosRankSum=1.631;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:9:0,9,80 0/1:9,4:13:35:78,0,35 0/0:15,0:15:3:0,3,25 0/0:6,0:6:3:0,3,43 +chr4 100205588 . T G 31.38 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.471;DP=120;Dels=0.00;FS=14.219;HaplotypeScore=2.6151;MLEAC=3;MLEAF=0.375;MQ=17.79;MQ0=0;MQRankSum=1.324;QD=0.36;ReadPosRankSum=-1.845;SB=-1.337e+00 GT:AD:DP:GQ:PL 0/0:32,1:34:24:0,24,276 0/1:33,1:34:7:7,0,225 0/1:31,1:32:7:7,0,125 0/1:17,3:20:34:58,0,34 +chr4 100232029 . A T 32.05 . AC=5;AF=0.625;AN=8;BaseQRankSum=-3.796;DP=137;Dels=0.01;FS=72.582;HaplotypeScore=6.0396;MLEAC=5;MLEAF=0.625;MQ=11.37;MQ0=0;MQRankSum=3.453;QD=0.33;ReadPosRankSum=-0.498;SB=1.16 GT:AD:DP:GQ:PL 0/0:34,5:39:6:0,6,59 0/1:40,3:43:10:10,0,62 1/1:44,3:47:3:22,3,0 1/1:5,2:7:6:44,6,0 +chr4 100341643 rs1154460 G A 757.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.444;DB;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.8656;MLEAC=3;MLEAF=0.375;MQ=39.15;MQ0=0;MQRankSum=-3.209;QD=12.84;ReadPosRankSum=0.788;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:31,0:31:90:0,90,1217 0/1:11,10:21:99:317,0,389 0/1:15,12:27:99:361,0,491 0/1:7,4:11:99:123,0,253 +chr4 100738035 rs715239 G T 197.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.252;DB;DP=90;Dels=0.00;FS=6.958;HaplotypeScore=2.7663;MLEAC=1;MLEAF=0.125;MQ=30.91;MQ0=0;MQRankSum=-0.564;QD=9.00;ReadPosRankSum=0.344;SB=-9.401e-03 GT:AD:DP:GQ:PL 0/1:13,9:22:99:234,0,305 0/0:21,0:21:48:0,48,533 0/0:29,0:29:69:0,69,880 0/0:18,0:18:42:0,42,475 +chr4 100870936 . A C 74.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.995;DP=153;Dels=0.01;FS=10.031;HaplotypeScore=1.5275;MLEAC=2;MLEAF=0.250;MQ=34.75;MQ0=0;MQRankSum=-0.955;QD=0.98;ReadPosRankSum=-1.672;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,6:39:76:76,0,883 0/0:39,2:41:73:0,73,1285 0/1:31,4:36:40:40,0,915 0/0:34,2:36:45:0,45,1013 +chr4 103184211 . T C 178.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.450;DP=110;Dels=0.01;FS=32.482;HaplotypeScore=9.7318;MLEAC=3;MLEAF=0.375;MQ=30.84;MQ0=0;MQRankSum=-1.095;QD=2.29;ReadPosRankSum=1.197;SB=1.93 GT:AD:DP:GQ:PL 0/1:28,4:32:37:37,0,575 0/0:30,1:31:30:0,30,543 0/1:26,8:34:99:169,0,417 0/1:10,1:12:16:16,0,130 +chr4 103533600 . A C 103.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.298;DP=110;Dels=0.00;FS=7.003;HaplotypeScore=1.4373;MLEAC=3;MLEAF=0.375;MQ=31.53;MQ0=0;MQRankSum=-1.288;QD=1.11;ReadPosRankSum=-1.758;SB=0.073 GT:AD:DP:GQ:PL 0/1:34,2:37:19:19,0,418 0/1:21,3:24:56:56,0,365 0/1:27,5:32:71:71,0,706 0/0:17,0:17:15:0,15,172 +chr4 103595121 . T C 270.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.898;DP=160;Dels=0.00;FS=90.865;HaplotypeScore=4.0358;MLEAC=4;MLEAF=0.500;MQ=33.46;MQ0=0;MQRankSum=-3.102;QD=1.69;ReadPosRankSum=0.922;SB=-2.270e+00 GT:AD:DP:GQ:PL 0/1:34,9:43:99:179,0,811 0/1:47,4:51:5:5,0,1109 0/1:47,5:52:76:76,0,930 0/1:12,2:14:52:52,0,176 +chr4 104061625 . T A 110.27 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.666;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.1926;MLEAC=3;MLEAF=0.375;MQ=27.01;MQ0=0;MQRankSum=-0.301;QD=2.76;ReadPosRankSum=-1.525;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:45:45,0,315 0/1:14,5:19:99:104,0,235 0/0:25,1:26:3:0,3,290 0/0:2,0:2:3:0,3,38 +chr4 104064355 . A C 112.24 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.421;DP=24;Dels=0.04;FS=6.107;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=23.47;MQ0=0;MQRankSum=-0.421;QD=7.01;ReadPosRankSum=2.339;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,55 0/1:3,4:7:51:85,0,51 0/1:5,3:8:27:65,0,27 ./. +chr4 104579603 . A G 144.68 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.581;DP=42;Dels=0.02;FS=3.132;HaplotypeScore=3.7124;MLEAC=5;MLEAF=0.625;MQ=21.88;MQ0=0;MQRankSum=1.954;QD=3.44;ReadPosRankSum=0.093;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:19:19,0,23 0/1:12,3:15:30:78,0,30 0/1:12,3:15:19:52,0,19 1/1:0,1:1:3:38,3,0 +chr4 105393361 rs4413407 A G 430.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.331;DB;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.9003;MLEAC=3;MLEAF=0.375;MQ=29.26;MQ0=0;MQRankSum=-0.532;QD=8.13;ReadPosRankSum=1.579;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,6:14:99:111,0,186 0/1:14,9:23:99:188,0,321 0/1:10,6:16:99:173,0,246 0/0:3,0:3:3:0,3,32 +chr4 106194181 . A T 70.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.234;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=25.19;MQ0=0;MQRankSum=-0.109;QD=2.22;ReadPosRankSum=1.203;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:54:54,0,174 0/0:9,0:9:6:0,6,82 0/1:10,4:14:39:39,0,187 0/1:3,3:6:20:20,0,53 +chr4 106196951 rs2454206 A G 1587.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=5.486;DB;DP=201;Dels=0.00;FS=2.885;HaplotypeScore=5.3743;MLEAC=2;MLEAF=0.250;MQ=39.54;MQ0=0;MQRankSum=-1.512;QD=14.70;ReadPosRankSum=2.379;SB=-7.550e+02 GT:AD:DP:GQ:PL 0/1:23,32:55:99:1083,0,725 0/1:36,17:53:99:546,0,1293 0/0:57,0:57:99:0,168,2224 0/0:36,0:36:99:0,105,1335 +chr4 106377179 . G T 35.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.098;DP=159;Dels=0.02;FS=0.000;HaplotypeScore=9.8443;MLEAC=2;MLEAF=0.250;MQ=26.04;MQ0=0;MQRankSum=3.868;QD=0.33;ReadPosRankSum=-0.086;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,2:36:3:0,3,622 0/1:53,4:57:19:19,0,629 0/1:40,5:48:56:56,0,497 0/0:14,0:15:18:0,18,171 +chr4 106474078 rs10032241 G A 803.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.679;DB;DP=111;Dels=0.00;FS=7.635;HaplotypeScore=1.8407;MLEAC=3;MLEAF=0.375;MQ=32.85;MQ0=0;MQRankSum=0.420;QD=10.30;ReadPosRankSum=1.904;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:16,13:29:99:364,0,521 0/0:33,0:33:84:0,84,1034 0/1:20,12:32:99:333,0,600 0/1:12,5:17:99:150,0,254 +chr4 108575838 . G A 338.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.288;DP=152;Dels=0.00;FS=48.297;HaplotypeScore=3.3592;MLEAC=4;MLEAF=0.500;MQ=33.39;MQ0=0;MQRankSum=-4.277;QD=2.23;ReadPosRankSum=1.946;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,6:37:99:111,0,659 0/1:42,6:48:86:86,0,944 0/1:37,6:43:65:65,0,831 0/1:18,6:24:99:119,0,217 +chr4 108578167 . G T 35.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.575;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.6167;MLEAC=1;MLEAF=0.125;MQ=34.98;MQ0=0;MQRankSum=-3.670;QD=0.92;ReadPosRankSum=-1.214;SB=-1.173e-02 GT:AD:DP:GQ:PL 0/0:41,1:43:65:0,65,1233 0/0:46,2:48:46:0,46,1250 0/0:47,1:48:93:0,93,1351 0/1:33,6:39:72:72,0,805 +chr4 108622241 rs17510783 C T 4502.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.617;DB;DP=172;Dels=0.01;FS=14.439;HaplotypeScore=1.9776;MLEAC=7;MLEAF=0.875;MQ=35.43;MQ0=0;MQRankSum=0.263;QD=26.17;ReadPosRankSum=1.976;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:7,38:45:88:1456,88,0 0/1:28,17:45:99:530,0,811 1/1:5,45:50:99:1662,129,0 1/1:5,26:31:69:854,69,0 +chr4 108954399 . T C 66.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.189;DP=154;Dels=0.00;FS=23.830;HaplotypeScore=5.5915;MLEAC=2;MLEAF=0.250;MQ=32.23;MQ0=0;MQRankSum=-1.112;QD=0.96;ReadPosRankSum=0.689;SB=0.084 GT:AD:DP:GQ:PL 0/1:39,3:42:43:43,0,507 0/0:45,0:45:69:0,69,825 0/0:40,0:40:54:0,54,648 0/1:24,3:27:65:65,0,166 +chr4 108984849 . T C 37.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.194;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=11.4337;MLEAC=3;MLEAF=0.375;MQ=22.48;MQ0=0;MQRankSum=0.717;QD=0.92;ReadPosRankSum=-1.536;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:12:0,12,102 0/1:19,2:21:37:37,0,67 0/1:12,1:14:12:12,0,61 1/1:5,1:6:3:32,3,0 +chr4 109579835 rs2575626 C T 611.86 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.968;DB;DP=47;Dels=0.02;FS=11.517;HaplotypeScore=2.5071;MLEAC=6;MLEAF=0.750;MQ=26.71;MQ0=0;MQRankSum=-0.242;QD=13.02;ReadPosRankSum=-0.576;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:99:108,0,149 1/1:5,11:16:30:332,30,0 0/1:3,12:15:24:188,0,24 1/1:1,2:4:3:28,3,0 +chr4 109735133 rs2305436 T C 965.84 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.367;DB;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9889;MLEAC=7;MLEAF=0.875;MQ=27.38;MQ0=0;MQRankSum=-2.746;QD=16.10;ReadPosRankSum=2.578;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,6:18:99:117,0,301 1/1:2,20:22:19:489,19,0 1/1:1,15:16:33:371,33,0 1/1:1,3:4:3:32,3,0 +chr4 110580084 rs1543812 G T 270.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.281;DB;DP=26;Dels=0.00;FS=6.214;HaplotypeScore=1.4556;MLEAC=4;MLEAF=0.500;MQ=27.22;MQ0=0;MQRankSum=-0.433;QD=10.39;ReadPosRankSum=1.357;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:10:10,0,112 0/1:2,5:7:18:144,0,18 0/1:4,5:9:89:134,0,89 0/1:2,1:3:18:24,0,18 +chr4 110606633 . C G 41.30 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.839;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.5549;MLEAC=3;MLEAF=0.500;MQ=26.39;MQ0=0;MQRankSum=1.733;QD=1.80;ReadPosRankSum=-1.621;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:25:25,0,102 0/1:9,1:10:23:23,0,84 0/1:3,1:4:32:32,0,53 ./. +chr4 110800819 . T C 45.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.166;DP=112;Dels=0.00;FS=31.195;HaplotypeScore=2.3530;MLEAC=4;MLEAF=0.500;MQ=16.89;MQ0=0;MQRankSum=3.181;QD=0.41;ReadPosRankSum=-2.709;SB=0.542 GT:AD:DP:GQ:PL 0/1:23,1:24:16:16,0,52 0/1:25,1:26:21:21,0,148 0/1:34,1:35:22:22,0,134 0/1:25,2:27:29:29,0,151 +chr4 111539971 . T G 70.77 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.048;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.4971;MLEAC=3;MLEAF=0.375;MQ=32.25;MQ0=0;MQRankSum=-1.115;QD=2.62;ReadPosRankSum=2.515;SB=-4.491e-01 GT:AD:DP:GQ:PL 0/1:8,3:11:78:78,0,186 0/1:6,2:8:27:27,0,158 0/0:10,0:10:21:0,21,226 0/1:7,1:8:8:8,0,154 +chr4 113352899 rs2074379 G A 2070.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.846;DB;DP=149;Dels=0.01;FS=1.637;HaplotypeScore=0.7397;MLEAC=5;MLEAF=0.625;MQ=33.54;MQ0=0;MQRankSum=-1.039;QD=13.90;ReadPosRankSum=3.082;SB=-5.830e+02 GT:AD:DP:GQ:PL 0/1:29,11:40:99:256,0,695 1/1:8,32:40:93:1181,93,0 0/1:26,13:39:99:358,0,692 0/1:17,12:29:99:321,0,388 +chr4 113353285 rs11726117 T C 2304.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.501;DB;DP=95;Dels=0.01;FS=7.296;HaplotypeScore=4.0442;MLEAC=8;MLEAF=1.00;MQ=34.57;MQ0=0;MQRankSum=3.701;QD=24.25;ReadPosRankSum=0.718;SB=-4.075e+02 GT:AD:DP:GQ:PL 1/1:8,14:22:16:532,16,0 1/1:5,17:22:26:633,26,0 1/1:10,15:25:19:559,19,0 1/1:8,17:25:17:619,17,0 +chr4 113362316 rs1486868 A G 1535.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.028;DB;DP=305;Dels=0.00;FS=21.722;HaplotypeScore=4.0211;MLEAC=3;MLEAF=0.375;MQ=38.87;MQ0=0;MQRankSum=-7.030;QD=7.31;ReadPosRankSum=-1.132;SB=-3.000e+02 GT:AD:DP:GQ:PL 0/1:55,19:74:99:513,0,1361 0/0:95,0:95:99:0,271,3579 0/1:61,24:85:99:653,0,2011 0/1:36,15:51:99:413,0,1036 +chr4 113569221 . G T 51.60 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.271;DP=71;Dels=0.04;FS=2.433;HaplotypeScore=13.5855;MLEAC=3;MLEAF=0.375;MQ=15.29;MQ0=0;MQRankSum=2.311;QD=1.72;ReadPosRankSum=-3.108;SB=2.48 GT:AD:DP:GQ:PL 0/1:15,2:17:18:18,0,62 0/0:20,0:20:6:0,6,61 0/0:18,1:19:12:0,12,115 1/1:9,3:12:9:79,9,0 +chr4 114179133 . C T 257.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.287;DP=54;Dels=0.00;FS=3.054;HaplotypeScore=5.5979;MLEAC=4;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=-1.137;QD=4.77;ReadPosRankSum=4.585;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,7:19:99:113,0,137 0/1:11,7:18:99:137,0,160 0/1:8,2:10:30:30,0,105 0/1:4,3:7:20:20,0,89 +chr4 114224062 . T C 200.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.306;DP=68;Dels=0.00;FS=2.787;HaplotypeScore=6.5975;MLEAC=3;MLEAF=0.375;MQ=26.34;MQ0=0;MQRankSum=-2.428;QD=3.29;ReadPosRankSum=3.086;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,7:20:99:120,0,140 0/1:15,7:22:99:107,0,236 0/1:17,2:19:16:16,0,109 0/0:7,0:7:9:0,9,116 +chr4 114257001 . G C 71.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.354;DP=108;Dels=0.03;FS=2.367;HaplotypeScore=9.1130;MLEAC=3;MLEAF=0.375;MQ=32.83;MQ0=0;MQRankSum=-5.634;QD=0.92;ReadPosRankSum=1.167;SB=0.036 GT:AD:DP:GQ:PL 0/1:22,5:27:42:42,0,428 0/1:19,5:24:22:22,0,509 0/0:28,2:30:25:0,25,696 0/1:19,5:24:51:51,0,434 +chr4 114288648 . A T 42.55 . AC=1;AF=0.167;AN=6;BaseQRankSum=1.356;DP=35;Dels=0.00;FS=2.884;HaplotypeScore=10.7673;MLEAC=1;MLEAF=0.167;MQ=19.58;MQ0=0;MQRankSum=-0.194;QD=4.25;ReadPosRankSum=1.097;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/0:11,1:12:6:0,6,44 0/1:6,4:10:50:76,0,50 0/0:4,1:5:3:0,3,26 +chr4 114290860 . G C 120.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.174;DP=155;Dels=0.01;FS=72.353;HaplotypeScore=25.3743;MLEAC=3;MLEAF=0.375;MQ=26.94;MQ0=0;MQRankSum=-1.475;QD=1.04;ReadPosRankSum=1.118;SB=0.589 GT:AD:DP:GQ:PL 0/0:35,3:38:16:0,16,670 0/1:35,6:41:77:77,0,533 0/1:34,7:41:67:67,0,587 0/1:28,6:34:20:20,0,488 +chr4 114290880 . A T 48.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.523;DP=149;Dels=0.01;FS=18.645;HaplotypeScore=13.9411;MLEAC=1;MLEAF=0.125;MQ=31.24;MQ0=0;MQRankSum=-0.090;QD=1.81;ReadPosRankSum=-1.282;SB=0.410 GT:AD:DP:GQ:PL 0/0:39,1:40:90:0,90,1092 0/0:41,1:42:44:0,44,849 0/0:39,0:39:75:0,75,954 0/1:22,4:27:85:85,0,307 +chr4 114423979 . G C 41.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.893;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=1.5708;MLEAC=2;MLEAF=0.250;MQ=27.61;MQ0=0;MQRankSum=-0.326;QD=3.43;ReadPosRankSum=2.807;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:9:6:0,6,80 0/1:5,3:8:47:58,0,47 0/0:3,0:3:9:0,9,114 1/1:3,1:4:3:25,3,0 +chr4 117519681 rs7693125 C T 61.91 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.494;DB;DP=75;Dels=0.03;FS=20.955;HaplotypeScore=4.2835;MLEAC=3;MLEAF=0.500;MQ=14.93;MQ0=0;MQRankSum=1.725;QD=1.72;ReadPosRankSum=0.155;SB=-8.415e+00 GT:AD:DP:GQ:PL 0/1:12,4:16:12:12,0,82 0/0:23,1:26:6:0,6,58 ./. 1/1:13,6:19:9:91,9,0 +chr4 119435061 rs147652632 C T 71.25 . AC=3;AF=0.500;AN=6;BaseQRankSum=2.984;DB;DP=152;Dels=0.03;FS=8.941;HaplotypeScore=0.9911;MLEAC=3;MLEAF=0.500;MQ=7.99;MQ0=0;MQRankSum=-0.456;QD=1.19;ReadPosRankSum=2.175;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/0:37,13:50:3:0,3,33 1/1:6,34:40:3:30,3,0 ./. 0/1:12,6:18:35:79,0,35 +chr4 120072238 rs6828349 A G 583.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.732;DB;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.8209;MLEAC=4;MLEAF=0.500;MQ=29.16;MQ0=0;MQRankSum=-2.773;QD=16.68;ReadPosRankSum=0.031;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,11:12:33:324,33,0 0/0:16,0:16:42:0,42,517 0/1:8,10:18:99:236,0,178 0/1:2,3:5:13:72,0,13 +chr4 120446868 rs113279806 GA G 612.55 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.691;DB;DP=115;FS=0.000;HaplotypeScore=23.2829;MLEAC=4;MLEAF=0.500;MQ=25.58;MQ0=0;MQRankSum=-0.784;QD=5.33;RPA=11,10;RU=A;ReadPosRankSum=2.610;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:19,8:25:99:217,0,185 0/1:31,3:24:26:26,0,219 0/1:15,12:27:40:288,0,40 0/1:9,8:14:32:133,0,32 +chr4 120987875 . G T 52.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=-0.623;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.4545;MLEAC=4;MLEAF=1.00;MQ=13.92;MQ0=0;MQRankSum=2.491;QD=1.58;ReadPosRankSum=0.156;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:16,1:17:3:26,3,0 ./. ./. 1/1:14,2:16:6:60,6,0 +chr4 122258063 rs4490481 A G 6494.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.137;DB;DP=216;Dels=0.03;FS=18.369;HaplotypeScore=4.4031;MLEAC=7;MLEAF=0.875;MQ=37.25;MQ0=0;MQRankSum=-2.773;QD=30.06;ReadPosRankSum=-0.274;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:29,24:53:99:776,0,1052 1/1:2,59:61:99:2293,178,0 1/1:1,49:50:99:1909,115,0 1/1:5,41:46:99:1516,117,0 +chr4 122824052 rs11732666 C T 1273.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.523;DB;DP=117;Dels=0.00;FS=11.171;HaplotypeScore=1.2368;MLEAC=4;MLEAF=0.500;MQ=35.78;MQ0=0;MQRankSum=-3.269;QD=15.92;ReadPosRankSum=0.466;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:75:940,75,0 0/0:37,0:37:99:0,108,1437 0/1:32,11:43:99:300,0,985 0/1:7,3:10:82:82,0,137 +chr4 122833314 rs906496 C T 250.34 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.162;DB;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7145;MLEAC=3;MLEAF=0.375;MQ=34.17;MQ0=0;MQRankSum=-2.303;QD=17.88;ReadPosRankSum=1.331;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,8:9:24:276,24,0 0/0:7,0:7:21:0,21,253 0/0:9,1:10:5:0,5,333 0/1:4,1:5:22:22,0,141 +chr4 123167220 . G C 129.98 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.128;DP=25;Dels=0.04;FS=2.632;HaplotypeScore=1.9439;MLEAC=4;MLEAF=0.500;MQ=28.22;MQ0=0;MQRankSum=0.634;QD=5.20;ReadPosRankSum=0.775;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:10:10,0,117 0/1:6,3:9:72:72,0,149 0/1:1,2:3:18:66,0,18 0/1:4,1:5:24:24,0,71 +chr4 123268706 . G C 373.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.143;DP=187;Dels=0.00;FS=133.196;HaplotypeScore=6.6613;MLEAC=4;MLEAF=0.500;MQ=33.48;MQ0=0;MQRankSum=-6.406;QD=2.00;ReadPosRankSum=1.006;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:44,8:53:57:57,0,820 0/1:38,7:46:99:133,0,687 0/1:45,8:53:98:98,0,999 0/1:25,9:35:99:128,0,603 +chr4 123664288 . T A 158.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.062;DP=154;Dels=0.00;FS=116.526;HaplotypeScore=6.4235;MLEAC=2;MLEAF=0.250;MQ=33.09;MQ0=0;MQRankSum=-1.417;QD=2.17;ReadPosRankSum=0.628;SB=-9.588e-01 GT:AD:DP:GQ:PL 0/1:31,4:35:45:45,0,723 0/1:29,9:38:99:155,0,560 0/0:44,2:46:24:0,24,1105 0/0:32,3:35:39:0,39,1026 +chr4 123664388 . G C 249.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.831;DP=152;Dels=0.00;FS=59.892;HaplotypeScore=2.7455;MLEAC=3;MLEAF=0.375;MQ=36.56;MQ0=0;MQRankSum=0.538;QD=2.09;ReadPosRankSum=0.331;SB=0.527 GT:AD:DP:GQ:PL 0/1:31,3:34:40:40,0,718 0/0:31,2:33:13:0,13,871 0/1:33,9:43:99:201,0,949 0/1:37,5:42:51:51,0,1038 +chr4 123664639 . A G 40.12 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.562;DP=105;Dels=0.00;FS=27.016;HaplotypeScore=3.1637;MLEAC=2;MLEAF=0.250;MQ=35.89;MQ0=0;MQRankSum=-2.884;QD=1.25;ReadPosRankSum=1.326;SB=-3.838e-01 GT:AD:DP:GQ:PL 0/0:34,0:34:66:0,66,895 0/1:20,5:25:67:67,0,699 0/0:39,0:39:90:0,90,1170 0/1:5,2:7:14:14,0,94 +chr4 124177233 . A T 130.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.388;DP=178;Dels=0.00;FS=109.205;HaplotypeScore=10.1203;MLEAC=2;MLEAF=0.250;MQ=33.65;MQ0=0;MQRankSum=-5.069;QD=1.19;ReadPosRankSum=3.825;SB=-2.781e-01 GT:AD:DP:GQ:PL 0/1:43,9:52:99:144,0,1186 0/0:44,6:50:25:0,25,1162 0/1:50,8:58:28:28,0,1395 0/0:16,2:18:10:0,10,315 +chr4 126315034 rs925243 T C 6057.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.583;DB;DP=182;Dels=0.00;FS=31.974;HaplotypeScore=2.3826;MLEAC=8;MLEAF=1.00;MQ=32.76;MQ0=0;MQRankSum=2.403;QD=33.28;ReadPosRankSum=2.174;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1663,138,0 1/1:2,45:47:99:1623,132,0 1/1:5,54:59:99:1879,115,0 1/1:1,26:27:78:892,78,0 +chr4 126384691 . A T 49.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.134;DP=194;Dels=0.00;FS=2.216;HaplotypeScore=2.3784;MLEAC=2;MLEAF=0.250;MQ=33.19;MQ0=0;MQRankSum=-3.925;QD=0.68;ReadPosRankSum=0.468;SB=-1.556e-01 GT:AD:DP:GQ:PL 0/1:51,7:58:74:74,0,852 0/0:59,3:62:78:0,78,1404 0/0:58,1:59:92:0,92,1519 0/1:12,3:15:17:17,0,327 +chr4 128627050 rs7683627 C T 686.75 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.895;DB;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8281;MLEAC=5;MLEAF=0.625;MQ=27.86;MQ0=0;MQRankSum=0.751;QD=16.35;ReadPosRankSum=0.780;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:99:109,0,181 1/1:2,12:14:36:398,36,0 0/1:3,8:11:69:146,0,69 0/1:3,3:6:13:79,0,13 +chr4 128688429 . A C 182.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=3.098;DP=87;Dels=0.05;FS=0.000;HaplotypeScore=31.1720;MLEAC=3;MLEAF=0.500;MQ=19.17;MQ0=0;MQRankSum=-0.328;QD=2.25;ReadPosRankSum=1.528;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,5:23:89:100,0,89 0/1:23,5:28:41:41,0,65 0/1:22,6:28:75:80,0,75 ./. +chr4 130027774 . G T 116.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.265;DP=89;Dels=0.00;FS=30.697;HaplotypeScore=1.4880;MLEAC=3;MLEAF=0.375;MQ=34.84;MQ0=0;MQRankSum=-2.025;QD=1.89;ReadPosRankSum=-0.435;SB=0.800 GT:AD:DP:GQ:PL 0/0:26,1:27:16:0,16,503 0/1:17,3:20:49:49,0,366 0/1:28,3:31:37:37,0,517 0/1:8,3:11:74:74,0,169 +chr4 133467448 rs7654526 C A 640.41 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.502;DB;DP=33;Dels=0.03;FS=5.740;HaplotypeScore=0.7143;MLEAC=8;MLEAF=1.00;MQ=26.34;MQ0=0;MQRankSum=1.617;QD=19.41;ReadPosRankSum=-0.462;SB=-2.415e+02 GT:AD:DP:GQ:PL 1/1:0,6:6:12:124,12,0 1/1:1,9:10:15:167,15,0 1/1:1,12:13:27:301,27,0 1/1:1,2:3:6:87,6,0 +chr4 136331203 . T A 90.26 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.903;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=2.1916;MLEAC=2;MLEAF=0.250;MQ=24.57;MQ0=0;MQRankSum=2.841;QD=3.47;ReadPosRankSum=-0.910;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:9:0,9,90 0/1:11,3:14:14:97,0,14 0/0:13,0:13:3:0,3,28 0/1:10,1:11:33:33,0,42 +chr4 138442438 . C G 180.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.028;DP=73;Dels=0.03;FS=57.318;HaplotypeScore=10.6953;MLEAC=4;MLEAF=0.500;MQ=27.66;MQ0=0;MQRankSum=-1.604;QD=2.47;ReadPosRankSum=1.765;SB=-3.711e+00 GT:AD:DP:GQ:PL 0/1:17,3:20:23:23,0,341 0/1:13,4:17:76:76,0,191 0/1:11,5:16:99:118,0,123 0/1:16,2:18:5:5,0,247 +chr4 138449812 rs10006580 C G 1513.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.048;DB;DP=310;Dels=0.01;FS=2.739;HaplotypeScore=5.6129;MLEAC=4;MLEAF=0.500;MQ=33.72;MQ0=0;MQRankSum=-7.256;QD=4.88;ReadPosRankSum=2.162;SB=-2.350e+02 GT:AD:DP:GQ:PL 0/1:64,17:81:99:280,0,1963 0/1:66,27:93:99:623,0,1832 0/1:66,22:88:99:435,0,1981 0/1:30,14:44:99:218,0,791 +chr4 139144337 . G A 38.74 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.892;DP=44;Dels=0.00;FS=2.669;HaplotypeScore=11.0007;MLEAC=3;MLEAF=0.375;MQ=31.65;MQ0=0;MQRankSum=-3.269;QD=0.99;ReadPosRankSum=2.138;SB=0.435 GT:AD:DP:GQ:PL 0/1:8,1:9:3:3,0,235 0/1:11,5:16:46:46,0,176 0/1:10,3:14:30:30,0,217 0/0:5,0:5:9:0,9,97 +chr4 140394238 rs113071191 C T 140.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.735;DB;DP=100;Dels=0.00;FS=12.514;HaplotypeScore=0.9883;MLEAC=3;MLEAF=0.375;MQ=35.66;MQ0=0;MQRankSum=-0.162;QD=1.53;ReadPosRankSum=0.486;SB=-1.266e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:42:42,0,390 0/1:34,5:39:99:100,0,715 0/1:28,3:31:41:41,0,488 0/0:8,0:8:9:0,9,99 +chr4 140441359 . G T 462.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.570;DP=66;Dels=0.03;FS=3.565;HaplotypeScore=7.9387;MLEAC=4;MLEAF=0.500;MQ=31.29;MQ0=0;MQRankSum=-3.684;QD=7.01;ReadPosRankSum=1.182;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,10:23:99:192,0,284 0/1:11,6:17:91:91,0,225 0/1:7,11:18:64:190,0,64 0/1:5,1:6:32:32,0,74 +chr4 141311960 rs358329 T C 414.80 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.845;DB;DP=21;Dels=0.05;FS=29.863;HaplotypeScore=0.6651;MLEAC=8;MLEAF=1.00;MQ=22.85;MQ0=0;MQRankSum=2.627;QD=19.75;ReadPosRankSum=-1.174;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,9:10:24:245,24,0 1/1:2,3:5:9:90,9,0 1/1:0,2:2:6:61,6,0 1/1:1,2:3:6:57,6,0 +chr4 141317220 rs76628856 G A 873.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.479;DB;DP=329;Dels=0.00;FS=12.083;HaplotypeScore=6.4372;MLEAC=1;MLEAF=0.125;MQ=32.52;MQ0=0;MQRankSum=0.309;QD=9.50;ReadPosRankSum=0.570;SB=-2.150e+02 GT:AD:DP:GQ:PL 0/0:101,1:102:99:0,274,3229 0/1:59,33:92:99:910,0,1768 0/0:103,1:104:99:0,246,3358 0/0:31,0:31:78:0,78,929 +chr4 141543419 . T G 177.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.379;DP=105;Dels=0.00;FS=7.120;HaplotypeScore=7.0388;MLEAC=3;MLEAF=0.375;MQ=27.55;MQ0=0;MQRankSum=-1.259;QD=2.11;ReadPosRankSum=-0.714;SB=1.04 GT:AD:DP:GQ:PL 0/1:23,4:27:34:34,0,341 0/1:19,6:25:79:79,0,296 0/1:26,6:32:99:106,0,493 0/0:19,2:21:5:0,5,259 +chr4 141578155 rs7683748 C T 578.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.061;DB;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.2333;MLEAC=4;MLEAF=0.500;MQ=21.32;MQ0=0;MQRankSum=-1.117;QD=3.21;ReadPosRankSum=1.546;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,16:51:99:111,0,632 0/1:30,13:43:99:139,0,477 0/1:28,23:51:99:209,0,416 0/1:22,13:35:99:162,0,313 +chr4 141598107 . A C 40.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.284;DP=131;Dels=0.05;FS=35.334;HaplotypeScore=28.6141;MLEAC=3;MLEAF=0.375;MQ=27.84;MQ0=0;MQRankSum=-2.136;QD=0.36;ReadPosRankSum=-0.250;SB=-2.674e+00 GT:AD:DP:GQ:PL 0/1:28,2:30:26:26,0,287 0/1:33,4:37:49:49,0,325 0/1:35,3:38:7:7,0,558 0/0:19,1:20:9:0,9,107 +chr4 141847279 rs12503723 G A 199.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.136;DB;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7018;MLEAC=1;MLEAF=0.125;MQ=36.67;MQ0=0;MQRankSum=-0.521;QD=8.70;ReadPosRankSum=0.711;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,8:23:99:236,0,507 0/0:32,0:32:90:0,90,1114 0/0:40,0:40:99:0,108,1367 0/0:22,0:22:60:0,60,751 +chr4 141870522 . C A 110.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.125;DP=168;Dels=0.00;FS=9.445;HaplotypeScore=4.1739;MLEAC=2;MLEAF=0.250;MQ=33.35;MQ0=0;MQRankSum=-2.432;QD=1.35;ReadPosRankSum=1.616;SB=0.073 GT:AD:DP:GQ:PL 0/0:39,1:40:20:0,20,631 0/1:43,5:48:94:94,0,575 0/0:46,0:46:84:0,84,1048 0/1:30,4:34:58:58,0,506 +chr4 142152533 . G T 39.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.704;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.6308;MLEAC=1;MLEAF=0.125;MQ=29.66;MQ0=0;MQRankSum=-0.124;QD=3.33;ReadPosRankSum=0.480;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:48,1:49:82:0,82,1166 0/0:57,0:57:99:0,144,1653 0/0:46,0:46:99:0,105,1246 0/1:9,3:12:44:76,0,44 +chr4 143043393 . C A 104.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.391;DP=81;Dels=0.01;FS=54.173;HaplotypeScore=9.0964;MLEAC=4;MLEAF=0.500;MQ=35.81;MQ0=0;MQRankSum=-4.254;QD=1.29;ReadPosRankSum=0.751;SB=-1.193e+00 GT:AD:DP:GQ:PL 0/1:18,2:20:22:22,0,475 0/1:21,6:28:47:47,0,686 0/1:17,5:22:73:73,0,496 0/1:9,1:10:4:4,0,200 +chr4 143235918 . G C 302.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.246;DP=114;Dels=0.02;FS=13.515;HaplotypeScore=13.7907;MLEAC=4;MLEAF=0.500;MQ=23.37;MQ0=0;MQRankSum=-0.387;QD=2.65;ReadPosRankSum=0.372;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:19,5:24:86:86,0,141 0/1:20,8:28:96:178,0,96 0/1:30,5:35:59:59,0,170 0/1:21,3:25:22:22,0,78 +chr4 144361645 . A C 31.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.931;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.1208;MLEAC=3;MLEAF=0.375;MQ=30.43;MQ0=0;MQRankSum=1.106;QD=4.55;ReadPosRankSum=1.377;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:25,3,0 0/0:6,0:6:9:0,9,103 0/1:4,2:6:23:48,0,23 0/0:4,0:4:3:0,3,31 +chr4 144447636 . C A 38.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.798;DP=104;Dels=0.01;FS=7.991;HaplotypeScore=0.7247;MLEAC=2;MLEAF=0.250;MQ=30.42;MQ0=0;MQRankSum=-2.246;QD=0.99;ReadPosRankSum=1.399;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,0:34:66:0,66,694 0/1:26,5:31:62:62,0,608 0/0:30,1:31:66:0,66,696 0/1:6,1:7:18:18,0,71 +chr4 144619376 . A T 119.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.585;DP=141;Dels=0.01;FS=21.092;HaplotypeScore=2.6989;MLEAC=4;MLEAF=0.500;MQ=32.06;MQ0=0;MQRankSum=-0.303;QD=0.85;ReadPosRankSum=-0.591;SB=-1.118e-01 GT:AD:DP:GQ:PL 0/1:35,5:40:84:84,0,580 0/1:35,4:39:46:46,0,691 0/1:37,2:39:15:15,0,655 0/1:21,1:22:17:17,0,229 +chr4 144918893 rs4835126 A G 559.75 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.962;DB;DP=64;Dels=0.00;FS=26.454;HaplotypeScore=0.2497;MLEAC=8;MLEAF=1.00;MQ=18.97;MQ0=0;MQRankSum=-0.039;QD=8.75;ReadPosRankSum=0.628;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,11:16:12:125,12,0 1/1:4,23:27:24:292,24,0 1/1:5,12:17:12:147,12,0 1/1:1,3:4:3:34,3,0 +chr4 145656090 . T A 218.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.985;DP=86;Dels=0.00;FS=2.391;HaplotypeScore=0.4985;MLEAC=3;MLEAF=0.375;MQ=36.84;MQ0=0;MQRankSum=-1.625;QD=3.47;ReadPosRankSum=2.631;SB=8.478e-03 GT:AD:DP:GQ:PL 0/1:13,5:18:99:119,0,241 0/0:22,1:23:24:0,24,690 0/1:23,4:27:42:42,0,649 0/1:14,4:18:99:101,0,292 +chr4 146475300 . C T 31.75 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.463;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=4.8775;MLEAC=2;MLEAF=0.250;MQ=31.26;MQ0=0;MQRankSum=-1.179;QD=0.77;ReadPosRankSum=1.597;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:19:52:52,0,150 0/1:20,2:22:19:19,0,185 0/0:23,1:25:6:0,6,358 0/0:7,0:7:3:0,3,43 +chr4 148559657 . C T 207.26 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.092;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=13.4295;MLEAC=6;MLEAF=0.750;MQ=21.87;MQ0=0;MQRankSum=1.917;QD=3.70;ReadPosRankSum=-2.354;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:40:40,0,54 0/1:14,4:18:22:76,0,22 1/1:16,5:21:12:112,12,0 1/1:0,1:1:3:23,3,0 +chr4 149357273 . C A 75.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.300;DP=128;Dels=0.00;FS=71.386;HaplotypeScore=2.1108;MLEAC=2;MLEAF=0.250;MQ=36.92;MQ0=0;MQRankSum=-2.464;QD=1.18;ReadPosRankSum=-0.261;SB=-3.121e-01 GT:AD:DP:GQ:PL 0/1:29,3:32:21:21,0,928 0/1:27,5:32:96:96,0,761 0/0:35,1:36:60:0,60,1063 0/0:27,1:28:46:0,46,959 +chr4 151504904 . G A 48.43 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.221;DP=81;Dels=0.00;FS=11.465;HaplotypeScore=17.5036;MLEAC=2;MLEAF=0.333;MQ=30.15;MQ0=0;MQRankSum=1.614;QD=1.03;ReadPosRankSum=-0.463;SB=-1.419e-01 GT:AD:DP:GQ:PL ./. 0/1:18,3:22:69:69,0,211 0/1:23,2:25:18:18,0,335 0/0:20,1:21:36:0,36,404 +chr4 152020756 . G T 42.38 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.972;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=1.4211;MLEAC=2;MLEAF=0.250;MQ=25.86;MQ0=0;MQRankSum=-2.472;QD=1.93;ReadPosRankSum=0.417;SB=0.312 GT:AD:DP:GQ:PL 0/0:7,0:7:6:0,6,77 0/1:3,5:8:20:70,0,20 0/1:13,1:14:12:12,0,206 0/0:5,2:7:9:0,9,85 +chr4 152203436 . T G 600.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.200;DP=268;Dels=0.02;FS=319.376;HaplotypeScore=28.3651;MLEAC=4;MLEAF=0.500;MQ=32.43;MQ0=0;MQRankSum=-8.092;QD=2.24;ReadPosRankSum=2.225;SB=0.947 GT:AD:DP:GQ:PL 0/1:55,16:71:99:196,0,1461 0/1:47,14:61:99:172,0,1084 0/1:63,11:74:99:133,0,1402 0/1:46,11:57:99:142,0,1070 +chr4 154197186 . A C 235.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.793;DP=109;Dels=0.04;FS=107.936;HaplotypeScore=8.3827;MLEAC=4;MLEAF=0.500;MQ=33.48;MQ0=0;MQRankSum=-3.465;QD=2.65;ReadPosRankSum=2.057;SB=-1.652e+00 GT:AD:DP:GQ:PL 0/1:19,5:24:98:98,0,512 0/0:17,2:19:1:0,1,291 0/1:26,3:30:40:40,0,640 0/1:22,10:32:99:138,0,338 +chr4 154601214 . A C 54.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.063;DP=64;Dels=0.03;FS=5.265;HaplotypeScore=8.2730;MLEAC=3;MLEAF=0.375;MQ=23.69;MQ0=0;MQRankSum=2.904;QD=0.92;ReadPosRankSum=-1.963;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:52:52,0,82 0/1:20,1:21:14:14,0,41 0/1:20,2:22:30:30,0,212 0/0:5,0:5:6:0,6,57 +chr4 155156687 . G T 55.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.690;DP=228;Dels=0.00;FS=9.353;HaplotypeScore=3.8815;MLEAC=1;MLEAF=0.125;MQ=38.07;MQ0=0;MQRankSum=-3.287;QD=1.40;ReadPosRankSum=-2.673;SB=-1.173e-02 GT:AD:DP:GQ:PL 0/0:52,1:53:79:0,79,1342 0/0:59,1:60:99:0,128,1968 0/0:72,2:74:76:0,76,1660 0/1:35,5:40:92:92,0,699 +chr4 155242383 rs62331873 C T 560.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.543;DB;DP=105;Dels=0.00;FS=14.228;HaplotypeScore=0.4992;MLEAC=2;MLEAF=0.250;MQ=36.72;MQ0=0;MQRankSum=-5.219;QD=10.01;ReadPosRankSum=-0.368;SB=-2.598e+01 GT:AD:DP:GQ:PL 0/1:18,11:29:99:261,0,599 0/1:15,12:27:99:341,0,440 0/0:40,0:40:99:0,114,1546 0/0:9,0:9:24:0,24,331 +chr4 155666058 . G A 33.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.075;DP=67;Dels=0.04;FS=0.000;HaplotypeScore=13.2565;MLEAC=3;MLEAF=0.375;MQ=25.89;MQ0=0;MQRankSum=-2.284;QD=0.65;ReadPosRankSum=2.075;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:17:17,0,148 0/1:15,4:20:34:34,0,218 0/1:17,2:19:26:26,0,210 0/0:13,1:14:24:0,24,257 +chr4 155720274 rs156502 T C 606.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.365;DB;DP=103;Dels=0.00;FS=5.147;HaplotypeScore=1.3393;MLEAC=2;MLEAF=0.250;MQ=37.44;MQ0=0;MQRankSum=-2.232;QD=11.23;ReadPosRankSum=0.516;SB=-3.173e+02 GT:AD:DP:GQ:PL 0/1:14,12:26:99:399,0,390 0/1:18,8:28:99:249,0,477 0/0:35,0:35:87:0,87,1170 0/0:14,0:14:39:0,39,522 +chr4 156289900 rs3733390 C T 859.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.268;DB;DP=112;Dels=0.02;FS=25.047;HaplotypeScore=6.1422;MLEAC=5;MLEAF=0.625;MQ=32.14;MQ0=0;MQRankSum=-3.392;QD=7.67;ReadPosRankSum=-0.513;SB=-2.849e+02 GT:AD:DP:GQ:PL 0/1:29,13:42:99:369,0,685 1/1:4,15:19:36:395,36,0 0/1:24,5:30:98:98,0,516 0/1:14,5:19:43:43,0,341 +chr4 158142742 . T C 244.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.217;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.4784;MLEAC=4;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=1.068;QD=2.52;ReadPosRankSum=0.918;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,2:29:35:35,0,321 0/1:16,6:22:99:151,0,231 0/1:18,2:20:44:44,0,136 0/1:23,3:26:57:57,0,106 +chr4 159092190 . G T 89.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.304;DP=133;Dels=0.00;FS=29.693;HaplotypeScore=0.5387;MLEAC=4;MLEAF=0.500;MQ=37.49;MQ0=0;MQRankSum=-1.325;QD=0.97;ReadPosRankSum=2.143;SB=-2.866e+00 GT:AD:DP:GQ:PL 0/1:21,3:24:58:58,0,524 0/1:34,4:39:63:63,0,836 0/0:38,3:41:1:0,1,1197 0/1:27,2:29:8:8,0,641 +chr4 159214475 . A G 46.27 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.296;DP=13;Dels=0.00;FS=2.932;HaplotypeScore=0.3156;MLEAC=3;MLEAF=0.500;MQ=24.82;MQ0=0;MQRankSum=1.580;QD=6.61;ReadPosRankSum=-0.895;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,28 ./. 0/1:3,2:5:20:44,0,20 1/1:1,1:2:3:40,3,0 +chr4 159642558 . C G 58.60 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.407;DP=86;Dels=0.00;FS=34.512;HaplotypeScore=0.4514;MLEAC=3;MLEAF=0.375;MQ=34.88;MQ0=0;MQRankSum=-2.490;QD=0.75;ReadPosRankSum=3.360;SB=-6.589e-01 GT:AD:DP:GQ:PL 0/1:22,4:26:66:66,0,651 0/1:20,3:23:9:9,0,489 0/1:26,3:29:26:26,0,756 0/0:8,0:8:21:0,21,221 +chr4 160099411 rs10015584 A G 147.61 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.495;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.3331;MLEAC=4;MLEAF=0.667;MQ=31.53;MQ0=0;MQRankSum=0.198;QD=24.60;ReadPosRankSum=-0.922;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:3:6:73,6,0 0/0:2,0:2:6:0,6,71 1/1:0,3:3:9:117,9,0 ./. +chr4 160262708 . T A 109.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.254;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=12.4666;MLEAC=3;MLEAF=0.375;MQ=25.19;MQ0=0;MQRankSum=-1.025;QD=2.97;ReadPosRankSum=-0.615;SB=-6.976e+01 GT:AD:DP:GQ:PL 0/1:6,5:12:29:64,0,29 0/1:10,3:13:61:61,0,111 0/1:10,2:12:26:26,0,153 0/0:1,0:1:3:0,3,40 +chr4 163032413 . T G 444.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.503;DP=166;Dels=0.01;FS=215.603;HaplotypeScore=14.3922;MLEAC=4;MLEAF=0.500;MQ=37.94;MQ0=0;MQRankSum=-3.929;QD=2.68;ReadPosRankSum=-0.296;SB=-2.952e+00 GT:AD:DP:GQ:PL 0/1:42,11:53:99:216,0,1348 0/1:36,8:44:99:117,0,1157 0/1:39,8:49:99:139,0,1080 0/1:15,3:18:15:15,0,504 +chr4 163906153 rs17574308 G T 219.67 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.847;DB;DP=39;Dels=0.00;FS=2.518;HaplotypeScore=1.2900;MLEAC=3;MLEAF=0.375;MQ=32.72;MQ0=0;MQRankSum=0.519;QD=15.69;ReadPosRankSum=1.235;SB=0.133 GT:AD:DP:GQ:PL 1/1:1,5:6:15:180,15,0 0/0:17,0:17:42:0,42,453 0/1:5,3:8:88:88,0,169 0/0:8,0:8:15:0,15,210 +chr4 164187042 . T C 42.24 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.312;DP=37;Dels=0.00;FS=2.663;HaplotypeScore=6.7658;MLEAC=2;MLEAF=0.333;MQ=19.87;MQ0=0;MQRankSum=0.694;QD=1.92;ReadPosRankSum=0.077;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:3:0,3,27 0/1:8,2:10:50:63,0,50 ./. 0/1:10,2:12:16:16,0,27 +chr4 164394760 . AG A 185.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.605;DP=61;FS=36.650;HaplotypeScore=56.4794;MLEAC=3;MLEAF=0.375;MQ=22.54;MQ0=0;MQRankSum=1.347;QD=4.04;ReadPosRankSum=-2.343;SB=2.36 GT:AD:DP:GQ:PL 0/0:13,0:13:19:0,19,437 0/1:12,5:14:99:188,0,177 0/1:9,2:9:27:27,0,171 0/1:11,3:8:23:23,0,227 +chr4 164507104 rs7435076 G T 336.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.622;DB;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=3.6632;MLEAC=4;MLEAF=0.500;MQ=29.33;MQ0=0;MQRankSum=0.476;QD=6.73;ReadPosRankSum=1.427;SB=-9.089e-03 GT:AD:DP:GQ:PL 0/1:4,7:11:67:228,0,67 0/1:7,2:9:29:29,0,199 0/1:11,2:13:35:35,0,256 0/1:11,5:16:87:87,0,124 +chr4 164853898 . A T 34.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.671;DP=70;Dels=0.00;FS=4.142;HaplotypeScore=0.9745;MLEAC=3;MLEAF=0.375;MQ=18.68;MQ0=0;MQRankSum=0.288;QD=0.65;ReadPosRankSum=-0.740;SB=-2.528e+00 GT:AD:DP:GQ:PL 0/1:16,1:17:24:24,0,27 0/1:17,3:20:39:39,0,53 0/0:17,0:17:15:0,15,159 0/1:14,2:16:14:14,0,87 +chr4 165922873 rs140453270 TTGG T 632.73 . AC=7;AF=0.875;AN=8;BaseQRankSum=-1.470;DB;DP=29;FS=0.000;HaplotypeScore=10.1634;MLEAC=8;MLEAF=1.00;MQ=17.52;MQ0=0;MQRankSum=0.668;QD=21.82;ReadPosRankSum=1.470;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:4,1:1:3:61,3,0 1/1:3,7:5:15:296,15,0 0/1:5,6:6:0:260,0,0 1/1:2,1:1:3:61,3,0 +chr4 166006916 . T G 34.36 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.296;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.2795;MLEAC=3;MLEAF=0.500;MQ=28.94;MQ0=0;MQRankSum=-0.296;QD=2.02;ReadPosRankSum=2.166;SB=9.97 GT:AD:DP:GQ:PL 0/1:6,1:7:27:27,0,54 0/1:7,1:9:18:18,0,55 ./. 1/1:0,1:1:3:28,3,0 +chr4 166259757 . T C 45.30 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.850;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=14.5791;MLEAC=4;MLEAF=0.667;MQ=25.46;MQ0=0;MQRankSum=0.750;QD=0.73;ReadPosRankSum=0.450;SB=-1.483e-02 GT:AD:DP:GQ:PL 0/1:17,1:18:22:22,0,54 1/1:22,1:23:3:31,3,0 0/1:17,2:21:31:31,0,76 ./. +chr4 169279170 rs497151 A G 1165.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.780;DB;DP=76;Dels=0.03;FS=10.856;HaplotypeScore=4.9533;MLEAC=5;MLEAF=0.625;MQ=33.10;MQ0=0;MQRankSum=-1.986;QD=15.34;ReadPosRankSum=0.970;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,17:21:51:603,51,0 0/1:14,13:27:99:355,0,379 0/1:13,6:19:99:171,0,349 0/1:4,3:7:82:82,0,100 +chr4 169337921 . C G 58.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.165;DP=135;Dels=0.02;FS=2.035;HaplotypeScore=12.7561;MLEAC=2;MLEAF=0.250;MQ=30.17;MQ0=0;MQRankSum=-2.655;QD=1.07;ReadPosRankSum=0.632;SB=-3.683e+01 GT:AD:DP:GQ:PL 0/0:36,1:37:55:0,55,863 0/1:34,8:42:91:91,0,726 0/0:40,2:42:46:0,46,749 0/1:10,1:11:7:7,0,146 +chr4 169341614 rs2319814 T C 42.16 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.373;DB;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.6815;MLEAC=1;MLEAF=0.125;MQ=28.50;MQ0=0;MQRankSum=-0.813;QD=4.68;ReadPosRankSum=-0.461;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,4:9:78:78,0,87 0/0:16,0:16:36:0,36,437 0/0:14,0:14:21:0,21,261 0/0:4,0:4:9:0,9,121 +chr4 169362557 rs13151700 C G 887.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.754;DB;DP=249;Dels=0.01;FS=56.469;HaplotypeScore=10.6083;MLEAC=3;MLEAF=0.375;MQ=35.01;MQ0=0;MQRankSum=-3.628;QD=4.96;ReadPosRankSum=1.057;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:70,0:70:99:0,186,2370 0/1:58,15:76:99:397,0,1295 0/1:50,15:68:99:403,0,1070 0/1:25,6:32:99:131,0,431 +chr4 169374254 . A C 73.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.362;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9499;MLEAC=3;MLEAF=0.375;MQ=30.17;MQ0=0;MQRankSum=-2.479;QD=0.78;ReadPosRankSum=0.403;SB=0.400 GT:AD:DP:GQ:PL 0/1:24,4:28:51:51,0,331 0/1:38,3:41:13:13,0,470 0/0:36,2:38:2:0,2,387 0/1:21,3:25:50:50,0,139 +chr4 169392982 . C T 182.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.745;DP=169;Dels=0.00;FS=18.948;HaplotypeScore=7.7857;MLEAC=4;MLEAF=0.500;MQ=35.29;MQ0=0;MQRankSum=-1.273;QD=1.08;ReadPosRankSum=1.107;SB=-6.926e-02 GT:AD:DP:GQ:PL 0/1:40,5:45:36:36,0,764 0/1:45,7:52:99:109,0,935 0/1:54,4:58:18:18,0,975 0/1:11,3:14:62:62,0,259 +chr4 169842828 . C G 45.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.357;DP=107;Dels=0.01;FS=25.131;HaplotypeScore=32.6403;MLEAC=4;MLEAF=0.500;MQ=29.12;MQ0=0;MQRankSum=-2.219;QD=0.43;ReadPosRankSum=2.502;SB=-1.414e+01 GT:AD:DP:GQ:PL 0/1:24,5:30:22:22,0,268 0/1:18,2:21:21:21,0,228 0/1:29,5:34:13:13,0,413 0/1:18,2:21:32:32,0,208 +chr4 170057398 . A T 418.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.673;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=13.7969;MLEAC=4;MLEAF=0.500;MQ=30.66;MQ0=0;MQRankSum=0.674;QD=2.19;ReadPosRankSum=3.159;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:50,8:58:99:119,0,478 0/1:34,3:37:24:24,0,477 0/1:49,11:60:99:165,0,499 0/1:28,7:35:99:153,0,260 +chr4 170671821 . A C 35.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.711;DP=255;Dels=0.00;FS=18.582;HaplotypeScore=1.3251;MLEAC=2;MLEAF=0.250;MQ=16.79;MQ0=0;MQRankSum=2.950;QD=0.34;ReadPosRankSum=-0.342;SB=-3.390e+00 GT:AD:DP:GQ:PL 0/0:68,1:69:0:0,0,217 0/1:75,3:78:57:57,0,212 0/0:81,0:81:51:0,51,533 0/1:26,1:27:18:18,0,150 +chr4 174189175 . A C 39.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.453;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=6.6892;MLEAC=2;MLEAF=0.250;MQ=29.78;MQ0=0;MQRankSum=0.691;QD=1.09;ReadPosRankSum=1.835;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,1:22:9:9,0,176 0/0:26,0:26:30:0,30,317 0/0:22,0:23:39:0,39,473 0/1:11,2:13:28:70,0,28 +chr4 175439123 . A G 68.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.020;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=10.3314;MLEAC=2;MLEAF=0.250;MQ=22.72;MQ0=0;MQRankSum=-0.223;QD=2.14;ReadPosRankSum=1.035;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:9:0,9,77 0/1:13,6:20:77:77,0,133 0/1:9,2:12:32:32,0,48 0/0:6,0:6:6:0,6,76 +chr4 175604008 rs41279513 C T 184.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.624;DB;DP=158;Dels=0.00;FS=11.013;HaplotypeScore=0.5379;MLEAC=1;MLEAF=0.125;MQ=33.07;MQ0=0;MQRankSum=-1.534;QD=5.29;ReadPosRankSum=0.134;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:26,9:35:99:221,0,735 0/0:53,0:53:99:0,144,1788 0/0:53,0:53:99:0,144,1751 0/0:17,0:17:48:0,48,548 +chr4 177095908 rs4690665 A G 1274.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.144;DB;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.2892;MLEAC=3;MLEAF=0.375;MQ=38.38;MQ0=0;MQRankSum=-1.264;QD=15.74;ReadPosRankSum=1.204;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,123,1665 0/1:16,18:34:99:645,0,444 0/1:22,19:41:99:602,0,695 0/1:4,2:6:71:71,0,75 +chr4 177136773 . T A 199.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.250;DP=102;Dels=0.00;FS=128.524;HaplotypeScore=1.7410;MLEAC=4;MLEAF=0.500;MQ=35.68;MQ0=0;MQRankSum=-1.914;QD=1.95;ReadPosRankSum=0.393;SB=-1.900e+00 GT:AD:DP:GQ:PL 0/1:25,2:27:7:7,0,783 0/1:25,4:29:32:32,0,671 0/1:27,7:34:99:150,0,719 0/1:10,2:12:52:52,0,255 +chr4 183600882 . G C 103.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.062;DP=156;Dels=0.03;FS=61.066;HaplotypeScore=21.3050;MLEAC=2;MLEAF=0.250;MQ=29.31;MQ0=0;MQRankSum=-2.147;QD=1.36;ReadPosRankSum=0.745;SB=-1.200e-02 GT:AD:DP:GQ:PL 0/1:31,5:36:64:64,0,625 0/1:29,7:38:81:81,0,615 0/0:38,3:41:31:0,31,793 0/0:32,2:37:27:0,27,590 +chr4 183673247 rs2309770 T A 103.33 . AC=2;AF=0.333;AN=6;BaseQRankSum=2.949;DB;DP=24;Dels=0.00;FS=3.074;HaplotypeScore=0.8227;MLEAC=2;MLEAF=0.333;MQ=19.76;MQ0=0;MQRankSum=0.604;QD=20.67;ReadPosRankSum=1.315;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,1:8:9:0,9,116 0/0:5,3:8:3:0,3,24 ./. 1/1:0,5:5:12:144,12,0 +chr4 184182001 rs10780066 A G 2478.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.897;DB;DP=72;Dels=0.01;FS=28.804;HaplotypeScore=0.9756;MLEAC=8;MLEAF=1.00;MQ=34.76;MQ0=0;MQRankSum=2.897;QD=34.43;ReadPosRankSum=0.776;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,17:18:51:669,51,0 1/1:2,13:15:39:507,39,0 1/1:1,15:16:45:609,45,0 1/1:2,20:22:60:733,60,0 +chr4 184301020 rs1567597 C T 277.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.841;DB;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8962;MLEAC=1;MLEAF=0.125;MQ=36.35;MQ0=0;MQRankSum=-0.509;QD=13.85;ReadPosRankSum=-0.178;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,9:20:99:313,0,290 0/0:13,0:13:33:0,33,447 0/0:16,0:16:45:0,45,570 0/0:6,0:6:15:0,15,197 +chr4 184589190 . T A 632.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.699;DP=234;Dels=0.00;FS=8.866;HaplotypeScore=8.6798;MLEAC=4;MLEAF=0.500;MQ=35.78;MQ0=0;MQRankSum=-4.478;QD=2.70;ReadPosRankSum=3.519;SB=-1.950e+02 GT:AD:DP:GQ:PL 0/1:57,9:66:99:202,0,747 0/1:54,11:65:99:188,0,820 0/1:64,9:73:99:142,0,1248 0/1:22,7:29:99:143,0,316 +chr4 184618991 . G C 139.31 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.811;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3966;MLEAC=3;MLEAF=0.375;MQ=31.80;MQ0=0;MQRankSum=-2.266;QD=1.86;ReadPosRankSum=0.692;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,6:24:99:111,0,480 0/1:20,5:25:66:66,0,394 0/1:23,3:26:3:3,0,531 0/0:22,1:23:17:0,17,441 +chr4 184922669 rs3749534 G A 3192.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.911;DB;DP=141;Dels=0.01;FS=24.256;HaplotypeScore=0.9706;MLEAC=6;MLEAF=0.750;MQ=38.28;MQ0=0;MQRankSum=-3.097;QD=22.64;ReadPosRankSum=1.603;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:24,8:32:99:235,0,872 0/1:21,15:36:99:481,0,699 1/1:2,41:43:62:1561,62,0 1/1:3,26:29:47:962,47,0 +chr4 184938129 rs138948095 T A 68.64 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.777;DB;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.1625;MLEAC=1;MLEAF=0.125;MQ=31.95;MQ0=0;MQRankSum=1.303;QD=13.73;ReadPosRankSum=1.422;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:18:0,18,226 0/1:2,3:5:54:104,0,54 0/0:4,0:4:6:0,6,68 0/0:5,0:5:6:0,6,52 +chr4 185018423 . C G 32.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.620;DP=191;Dels=0.00;FS=34.668;HaplotypeScore=4.1460;MLEAC=1;MLEAF=0.125;MQ=37.72;MQ0=0;MQRankSum=-1.045;QD=0.79;ReadPosRankSum=-1.026;SB=-6.419e+00 GT:AD:DP:GQ:PL 0/0:45,1:47:74:0,74,1283 0/0:45,1:46:76:0,76,1351 0/0:55,0:56:99:0,120,1600 0/1:38,4:42:69:69,0,658 +chr4 185941337 . T G 156.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.445;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=1.8435;MLEAC=3;MLEAF=0.375;MQ=30.47;MQ0=0;MQRankSum=-1.999;QD=2.70;ReadPosRankSum=-0.816;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:39:39,0,365 0/1:18,5:23:99:106,0,283 0/0:29,0:29:72:0,72,769 0/1:11,3:14:55:55,0,246 +chr4 186244870 . T G 65.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.777;DP=154;Dels=0.00;FS=68.211;HaplotypeScore=1.2365;MLEAC=2;MLEAF=0.250;MQ=36.27;MQ0=0;MQRankSum=1.915;QD=0.71;ReadPosRankSum=2.396;SB=2.69 GT:AD:DP:GQ:PL 0/1:35,4:39:53:53,0,1054 0/0:47,2:49:40:0,40,1252 0/1:48,5:53:54:54,0,1272 0/0:13,0:13:24:0,24,311 +chr4 186336583 rs10032989 G A 1374.20 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.448;DB;DP=50;Dels=0.00;FS=7.179;HaplotypeScore=1.4817;MLEAC=8;MLEAF=1.00;MQ=32.86;MQ0=0;MQRankSum=4.448;QD=27.48;ReadPosRankSum=0.527;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,7:11:21:263,21,0 1/1:4,12:16:14:429,14,0 1/1:4,16:20:24:597,24,0 1/1:0,3:3:9:124,9,0 +chr4 186551803 . T G 49.51 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.355;DP=34;Dels=0.00;FS=3.139;HaplotypeScore=12.0342;MLEAC=5;MLEAF=0.833;MQ=16.36;MQ0=0;MQRankSum=1.355;QD=1.77;ReadPosRankSum=0.177;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:6,1:8:3:24,3,0 1/1:6,3:9:3:24,3,0 0/1:9,2:11:14:39,0,14 ./. +chr4 187158034 rs3733402 G A 462.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.264;DB;DP=111;Dels=0.02;FS=9.088;HaplotypeScore=7.7511;MLEAC=4;MLEAF=0.500;MQ=33.67;MQ0=0;MQRankSum=-0.489;QD=4.17;ReadPosRankSum=-0.648;SB=-1.049e+02 GT:AD:DP:GQ:PL 0/1:22,2:24:30:30,0,431 0/1:28,6:34:89:89,0,573 0/1:26,11:37:99:325,0,485 0/1:12,2:14:61:61,0,167 +chr4 187172976 . G C 247.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.637;DP=183;Dels=0.01;FS=192.258;HaplotypeScore=5.5865;MLEAC=3;MLEAF=0.375;MQ=40.62;MQ0=0;MQRankSum=-5.035;QD=1.51;ReadPosRankSum=1.720;SB=-3.890e+00 GT:AD:DP:GQ:PL 0/1:45,11:56:99:221,0,1573 0/1:47,5:52:28:28,0,1459 0/1:48,6:54:42:42,0,1675 0/0:19,0:19:39:0,39,532 +chr4 187517619 . T G 153.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.765;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=4.4383;MLEAC=2;MLEAF=0.250;MQ=31.81;MQ0=0;MQRankSum=-0.925;QD=3.42;ReadPosRankSum=-0.925;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:94:94,0,385 0/0:11,1:12:24:0,24,286 0/1:21,5:26:99:101,0,344 0/0:14,1:15:10:0,10,261 +chr4 187518976 rs2306990 C T 3415.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.553;DB;DP=226;Dels=0.00;FS=2.413;HaplotypeScore=1.4733;MLEAC=3;MLEAF=0.375;MQ=32.07;MQ0=0;MQRankSum=3.327;QD=19.29;ReadPosRankSum=-0.309;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:26,42:68:99:1303,0,542 0/0:49,0:49:99:0,132,1471 0/1:27,43:70:99:1424,0,622 0/1:17,22:39:99:688,0,428 +chr4 189988321 rs4863451 G A 39.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.358;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=21.06;MQ0=0;MQRankSum=1.231;QD=6.50;ReadPosRankSum=-0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:3,1:4:3:30,3,0 1/1:1,1:2:3:42,3,0 ./. +chr4 190503289 rs9917996 C T 116.27 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.380;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=0.750;MQ=32.15;MQ0=0;MQRankSum=0.000;QD=19.38;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:40,3,0 1/1:2,2:4:6:79,6,0 0/0:1,0:1:3:0,3,43 1/1:0,1:1:3:39,3,0 +chr4 190534520 rs78833846 T A 58.98 . AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.28;MQ0=0;QD=19.66;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,3:3:9:91,9,0 ./. +chr4 190862259 rs79655093 C A 61.07 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.472;DB;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.3223;MLEAC=3;MLEAF=0.375;MQ=21.41;MQ0=0;MQRankSum=-2.577;QD=1.09;ReadPosRankSum=-1.564;SB=-3.123e-02 GT:AD:DP:GQ:PL 0/0:14,3:17:18:0,18,203 0/1:14,3:17:34:34,0,236 0/1:19,5:24:55:55,0,269 0/1:12,3:15:15:15,0,103 +chr4 190942617 rs147863391 C T 58.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=2.315;DB;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=1.5186;MLEAC=3;MLEAF=0.500;MQ=10.31;MQ0=0;MQRankSum=1.416;QD=2.24;ReadPosRankSum=-2.180;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:10,3:14:3:39,3,0 0/0:7,3:10:3:0,3,34 ./. 0/1:6,5:11:20:57,0,20 +chr4 190943538 . G T 469.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.280;DP=405;Dels=0.00;FS=8.555;HaplotypeScore=63.9233;MLEAC=3;MLEAF=0.375;MQ=25.92;MQ0=0;MQRankSum=-3.231;QD=1.65;ReadPosRankSum=-5.768;SB=-2.532e+02 GT:AD:DP:GQ:PL 0/1:85,16:104:99:189,0,1623 0/1:70,18:90:99:170,0,1046 0/0:109,10:120:25:0,25,2438 0/1:74,11:89:99:154,0,874 +chr5 156287 rs6554830 G A 184.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.376;DB;DP=108;Dels=0.02;FS=0.000;HaplotypeScore=0.4989;MLEAC=1;MLEAF=0.125;MQ=34.59;MQ0=0;MQRankSum=-3.002;QD=7.40;ReadPosRankSum=-0.435;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/0:19,0:19:54:0,54,715 0/1:15,10:25:99:221,0,286 0/0:31,0:31:84:0,84,1094 0/0:31,0:31:87:0,87,1051 +chr5 457261 rs11749327 C A 196.53 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.965;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.1835;MLEAC=7;MLEAF=0.875;MQ=33.18;MQ0=0;MQRankSum=-0.715;QD=11.56;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:26:26,0,177 1/1:1,1:2:3:38,3,0 1/1:3,5:8:12:142,12,0 1/1:0,1:1:3:32,3,0 +chr5 462470 . G T 84.30 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.247;DP=107;Dels=0.03;FS=0.000;HaplotypeScore=14.5452;MLEAC=1;MLEAF=0.125;MQ=25.67;MQ0=0;MQRankSum=-0.442;QD=3.12;ReadPosRankSum=-0.936;SB=0.177 GT:AD:DP:GQ:PL 0/0:20,1:21:11:0,11,415 0/0:28,2:30:8:0,8,346 0/0:26,2:28:21:0,21,409 0/1:19,6:25:99:120,0,121 +chr5 481606 . C G 52.63 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.772;DP=98;Dels=0.03;FS=0.000;HaplotypeScore=27.4650;MLEAC=3;MLEAF=0.375;MQ=25.01;MQ0=0;MQRankSum=-0.163;QD=0.67;ReadPosRankSum=0.728;SB=2.98 GT:AD:DP:GQ:PL 0/0:17,1:19:18:0,18,228 0/1:22,2:25:29:29,0,193 0/1:23,4:27:57:57,0,256 0/1:23,1:24:9:9,0,187 +chr5 484617 . T A 40.05 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.217;DP=30;Dels=0.00;FS=2.246;HaplotypeScore=2.9154;MLEAC=4;MLEAF=0.500;MQ=20.55;MQ0=0;MQRankSum=-1.912;QD=1.34;ReadPosRankSum=2.317;SB=-2.174e-01 GT:AD:DP:GQ:PL 0/1:5,3:8:15:15,0,50 0/1:6,3:9:11:11,0,91 0/1:6,2:8:19:37,0,19 0/1:2,3:5:19:19,0,45 +chr5 640731 . C A 61.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.392;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.9883;MLEAC=3;MLEAF=0.375;MQ=24.59;MQ0=0;MQRankSum=0.392;QD=2.44;ReadPosRankSum=2.115;SB=0.142 GT:AD:DP:GQ:PL 0/1:4,1:5:18:18,0,69 0/1:7,2:9:33:49,0,33 0/0:9,0:9:15:0,15,158 0/1:9,2:11:37:37,0,100 +chr5 766910 rs1809933 C T 52.78 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.136;DB;DP=64;Dels=0.00;FS=1.437;HaplotypeScore=3.1197;MLEAC=3;MLEAF=0.375;MQ=22.82;MQ0=0;MQRankSum=-2.812;QD=1.12;ReadPosRankSum=2.332;SB=-4.097e-01 GT:AD:DP:GQ:PL 0/1:5,5:10:19:27,0,19 0/0:14,3:17:21:0,21,243 0/1:12,5:17:60:60,0,108 0/1:11,9:20:8:8,0,268 +chr5 767082 . G C 45.77 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.353;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=5.1508;MLEAC=5;MLEAF=0.625;MQ=15.72;MQ0=0;MQRankSum=1.693;QD=1.53;ReadPosRankSum=-0.289;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:7:6:0,6,70 1/1:10,2:13:3:22,3,0 0/1:9,1:10:19:19,0,57 1/1:5,2:7:6:49,6,0 +chr5 796147 . C G 48.23 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.578;DP=235;Dels=0.03;FS=33.826;HaplotypeScore=19.0576;MLEAC=1;MLEAF=0.125;MQ=10.97;MQ0=0;MQRankSum=1.984;QD=0.83;ReadPosRankSum=0.166;SB=-2.178e+01 GT:AD:DP:GQ:PL 0/0:55,1:57:12:0,12,116 0/1:50,6:57:46:84,0,46 0/0:54,2:57:12:0,12,115 0/0:53,2:57:12:0,12,95 +chr5 912134 . C A 43.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.766;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.1066;MLEAC=3;MLEAF=0.375;MQ=26.07;MQ0=0;MQRankSum=-0.274;QD=0.69;ReadPosRankSum=0.305;SB=-4.355e-01 GT:AD:DP:GQ:PL 0/1:20,3:23:45:45,0,281 0/1:22,2:24:7:7,0,477 0/0:26,1:28:25:0,25,501 0/1:14,3:17:34:34,0,124 +chr5 1032243 . C G 66.89 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.363;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.4710;MLEAC=2;MLEAF=0.250;MQ=27.37;MQ0=0;MQRankSum=-1.972;QD=3.34;ReadPosRankSum=-2.024;SB=-6.072e-03 GT:AD:DP:GQ:PL 0/0:11,0:11:18:0,18,177 0/1:10,1:11:18:18,0,27 0/0:17,0:17:27:0,27,307 0/1:5,4:9:11:90,0,11 +chr5 1034870 . G T 88.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.030;DP=75;Dels=0.01;FS=20.025;HaplotypeScore=11.2682;MLEAC=3;MLEAF=0.375;MQ=24.83;MQ0=0;MQRankSum=-0.927;QD=1.48;ReadPosRankSum=-1.888;SB=0.317 GT:AD:DP:GQ:PL 0/0:14,1:15:6:0,6,64 0/1:16,3:19:36:36,0,68 0/1:19,1:20:9:9,0,87 0/1:16,4:20:85:85,0,107 +chr5 1052399 . C A 61.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.433;DP=58;Dels=0.02;FS=28.262;HaplotypeScore=2.3861;MLEAC=3;MLEAF=0.375;MQ=29.06;MQ0=0;MQRankSum=-2.238;QD=1.69;ReadPosRankSum=3.494;SB=-1.932e+00 GT:AD:DP:GQ:PL 0/1:12,4:16:66:66,0,169 0/0:12,1:13:0:0,0,252 0/1:16,4:20:34:34,0,329 0/0:8,0:8:12:0,12,121 +chr5 1090364 rs4975663 A G 39.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.40;MQ0=0;MQRankSum=0.736;QD=13.26;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,2:3:6:71,6,0 ./. +chr5 1225856 . T A 32.98 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.781;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.0917;MLEAC=2;MLEAF=0.250;MQ=20.94;MQ0=0;MQRankSum=1.375;QD=1.18;ReadPosRankSum=-0.564;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,198 0/1:12,1:13:17:17,0,40 0/0:7,0:7:15:0,15,164 0/1:12,3:15:57:57,0,91 +chr5 1232421 . G C 142.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.635;DP=19;Dels=0.00;FS=6.726;HaplotypeScore=2.4377;MLEAC=3;MLEAF=0.375;MQ=27.72;MQ0=0;MQRankSum=0.741;QD=8.88;ReadPosRankSum=0.212;SB=3.31 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,58 0/1:2,1:3:17:19,0,17 0/1:5,3:8:62:85,0,62 0/1:2,3:5:40:80,0,40 +chr5 1235808 . T C 50.18 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.082;DP=105;Dels=0.00;FS=6.951;HaplotypeScore=3.2874;MLEAC=2;MLEAF=0.250;MQ=29.83;MQ0=0;MQRankSum=-3.646;QD=0.82;ReadPosRankSum=0.888;SB=0.385 GT:AD:DP:GQ:PL 0/0:20,2:22:16:0,16,496 0/1:23,5:28:61:61,0,464 0/1:28,5:33:29:29,0,664 0/0:18,3:22:2:0,2,276 +chr5 1280215 . A T 130.72 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.899;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.8668;MLEAC=2;MLEAF=0.250;MQ=36.59;MQ0=0;MQRankSum=0.968;QD=1.45;ReadPosRankSum=0.577;SB=-1.867e+00 GT:AD:DP:GQ:PL 0/1:41,4:45:6:6,0,1105 0/0:36,2:39:1:0,1,893 0/0:45,2:47:34:0,34,1205 0/1:37,7:45:99:162,0,751 +chr5 1325780 . C T 756.83 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.830;DP=68;Dels=0.01;FS=17.249;HaplotypeScore=4.9270;MLEAC=7;MLEAF=0.875;MQ=24.39;MQ0=0;MQRankSum=2.732;QD=11.13;ReadPosRankSum=3.513;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:9,4:13:9:95,9,0 1/1:7,12:19:33:342,33,0 1/1:8,8:16:1:160,1,0 0/1:9,9:19:63:202,0,63 +chr5 1409746 . T G 55.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.633;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=9.3688;MLEAC=3;MLEAF=0.375;MQ=19.67;MQ0=0;MQRankSum=-0.100;QD=2.32;ReadPosRankSum=1.567;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:19:19,0,55 0/1:5,1:6:14:14,0,42 0/1:4,4:8:41:65,0,41 0/0:8,0:8:9:0,9,83 +chr5 1409753 . C T 34.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.176;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=6.5440;MLEAC=2;MLEAF=0.250;MQ=20.67;MQ0=0;MQRankSum=0.933;QD=2.18;ReadPosRankSum=-0.122;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:39:39,0,118 0/0:8,0:8:12:0,12,98 0/1:5,2:7:37:37,0,76 0/0:7,0:7:12:0,12,107 +chr5 1473977 rs27056 A G 1075.09 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.297;DB;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.4956;MLEAC=7;MLEAF=0.875;MQ=31.96;MQ0=0;MQRankSum=-3.271;QD=23.89;ReadPosRankSum=1.111;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,5:12:99:145,0,252 1/1:1,10:11:2:320,2,0 1/1:1,12:13:36:401,36,0 1/1:0,9:9:21:252,21,0 +chr5 1772033 rs904758 T C 30.27 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.198;DB;DP=9;Dels=0.00;FS=3.680;HaplotypeScore=0.1928;MLEAC=4;MLEAF=0.667;MQ=21.92;MQ0=0;MQRankSum=0.922;QD=6.05;ReadPosRankSum=-0.922;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:43,3,0 0/0:3,0:3:3:0,3,44 1/1:2,1:3:3:25,3,0 +chr5 1879899 . T G 99.07 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.971;DP=103;Dels=0.00;FS=4.597;HaplotypeScore=2.5934;MLEAC=4;MLEAF=0.500;MQ=30.22;MQ0=0;MQRankSum=1.752;QD=0.96;ReadPosRankSum=-2.844;SB=-4.030e-01 GT:AD:DP:GQ:PL 0/1:24,2:26:22:22,0,293 0/1:20,2:23:21:21,0,289 0/1:27,2:29:9:9,0,552 0/1:20,4:25:89:89,0,251 +chr5 3314455 rs7723618 T C 39.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=7;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=18.04;MQ0=0;MQRankSum=1.026;QD=7.80;ReadPosRankSum=-1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:34,3,0 1/1:2,1:3:3:38,3,0 ./. +chr5 5223073 rs12652968 A G 1292.80 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.818;DB;DP=78;Dels=0.00;FS=8.178;HaplotypeScore=1.7627;MLEAC=6;MLEAF=0.750;MQ=33.68;MQ0=0;MQRankSum=-1.335;QD=16.57;ReadPosRankSum=-0.418;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,6:24:99:155,0,586 0/1:10,13:23:99:383,0,276 1/1:4,15:19:42:512,42,0 1/1:3,9:12:24:289,24,0 +chr5 5235096 rs2913631 A G 378.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.685;DB;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.6320;MLEAC=2;MLEAF=0.250;MQ=31.35;MQ0=0;MQRankSum=1.581;QD=12.21;ReadPosRankSum=-0.238;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:99:115,0,282 0/1:6,9:15:99:305,0,107 0/0:14,0:14:33:0,33,409 0/0:11,0:11:30:0,30,336 +chr5 6607482 . C G 80.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.100;DP=96;Dels=0.01;FS=16.807;HaplotypeScore=9.7830;MLEAC=3;MLEAF=0.375;MQ=26.79;MQ0=0;MQRankSum=-2.527;QD=1.11;ReadPosRankSum=0.961;SB=-2.594e-01 GT:AD:DP:GQ:PL 0/1:18,3:21:52:52,0,240 0/1:24,6:31:64:64,0,380 0/0:23,0:23:24:0,24,286 0/1:19,1:20:7:7,0,222 +chr5 7706857 . G A 117.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.223;DP=174;Dels=0.01;FS=8.711;HaplotypeScore=2.4226;MLEAC=2;MLEAF=0.250;MQ=29.25;MQ0=0;MQRankSum=-2.036;QD=1.46;ReadPosRankSum=0.318;SB=-2.019e+00 GT:AD:DP:GQ:PL 0/0:46,1:47:91:0,91,1226 0/1:39,4:43:7:7,0,728 0/0:43,3:46:26:0,26,1025 0/1:29,8:37:99:150,0,536 +chr5 7706888 . A T 268.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.256;DP=183;Dels=0.01;FS=82.098;HaplotypeScore=24.3348;MLEAC=4;MLEAF=0.500;MQ=27.24;MQ0=0;MQRankSum=-0.412;QD=1.47;ReadPosRankSum=0.233;SB=-1.256e+00 GT:AD:DP:GQ:PL 0/1:43,2:46:4:4,0,631 0/1:45,6:51:86:86,0,589 0/1:47,5:53:82:82,0,453 0/1:23,7:31:99:138,0,200 +chr5 7706974 . T C 126.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.158;DP=145;Dels=0.00;FS=20.036;HaplotypeScore=16.1503;MLEAC=4;MLEAF=0.500;MQ=28.68;MQ0=0;MQRankSum=-1.058;QD=0.87;ReadPosRankSum=1.819;SB=-2.192e-01 GT:AD:DP:GQ:PL 0/1:35,5:40:79:79,0,509 0/1:28,4:32:39:39,0,390 0/1:39,4:43:40:40,0,535 0/1:27,3:30:11:11,0,385 +chr5 7885959 rs162036 A G 1314.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.890;DB;DP=200;Dels=0.00;FS=5.468;HaplotypeScore=2.7622;MLEAC=3;MLEAF=0.375;MQ=34.54;MQ0=0;MQRankSum=-2.195;QD=9.26;ReadPosRankSum=1.729;SB=-2.750e+02 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,159,1952 0/1:32,18:51:99:517,0,836 0/1:35,22:57:99:574,0,998 0/1:23,10:34:99:267,0,513 +chr5 7892816 rs112720161 A C 115.41 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.260;DB;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=11.3362;MLEAC=2;MLEAF=0.250;MQ=28.97;MQ0=0;MQRankSum=-0.084;QD=2.14;ReadPosRankSum=1.988;SB=19.85 GT:AD:DP:GQ:PL 0/1:21,2:25:51:51,0,116 0/1:22,4:29:68:105,0,68 0/0:22,0:23:9:0,9,93 0/0:14,0:14:9:0,9,89 +chr5 9199533 . T G 37.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.358;DP=9;Dels=0.00;FS=9.700;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=16.00;MQ0=0;MQRankSum=1.231;QD=6.17;ReadPosRankSum=-1.231;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:2,1:3:3:38,3,0 1/1:2,1:3:3:32,3,0 +chr5 10254851 . T G 272.74 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.030;DP=96;Dels=0.02;FS=185.847;HaplotypeScore=17.0951;MLEAC=4;MLEAF=0.500;MQ=19.18;MQ0=0;MQRankSum=1.104;QD=2.84;ReadPosRankSum=2.904;SB=4.70 GT:AD:DP:GQ:PL 0/1:18,7:25:57:57,0,174 0/1:16,9:25:16:16,0,112 0/1:16,15:32:99:217,0,153 0/1:8,4:12:16:25,0,16 +chr5 10258125 rs2457156 G A 605.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.096;DB;DP=48;Dels=0.04;FS=0.000;HaplotypeScore=0.9260;MLEAC=4;MLEAF=0.500;MQ=33.85;MQ0=0;MQRankSum=-0.106;QD=12.62;ReadPosRankSum=0.978;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,7:14:99:249,0,169 0/1:5,5:10:99:123,0,106 0/1:9,6:15:99:210,0,152 0/1:5,2:7:66:66,0,144 +chr5 10261616 . T G 128.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.094;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=6.7213;MLEAC=4;MLEAF=0.500;MQ=29.12;MQ0=0;MQRankSum=1.952;QD=0.62;ReadPosRankSum=0.707;SB=-2.633e-01 GT:AD:DP:GQ:PL 0/1:44,2:46:18:18,0,303 0/1:52,2:54:12:12,0,392 0/1:55,2:57:9:9,0,281 0/1:43,6:50:99:131,0,400 +chr5 10261965 . C G 35.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=4.771;HaplotypeScore=0.4789;MLEAC=4;MLEAF=1.00;MQ=19.41;MQ0=0;MQRankSum=0.736;QD=7.00;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:36,3,0 1/1:1,1:2:3:32,3,0 ./. ./. +chr5 10433815 . T C 454.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.560;DP=112;Dels=0.01;FS=11.225;HaplotypeScore=6.2335;MLEAC=4;MLEAF=0.500;MQ=28.79;MQ0=0;MQRankSum=-2.560;QD=4.06;ReadPosRankSum=4.418;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,6:24:99:141,0,134 0/1:28,9:37:99:165,0,202 0/1:23,7:30:97:97,0,162 0/1:14,6:20:94:94,0,131 +chr5 10489229 rs2399907 T C 41.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=26;Dels=0.04;FS=44.864;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.21;MQ0=0;MQRankSum=0.727;QD=10.44;ReadPosRankSum=0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:6:73,6,0 ./. ./. ./. +chr5 10973927 rs1566624 T C 105.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.038;DB;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.0821;MLEAC=1;MLEAF=0.125;MQ=37.59;MQ0=0;MQRankSum=-1.836;QD=4.82;ReadPosRankSum=-0.283;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,6:22:99:142,0,518 0/0:15,0:15:45:0,45,584 0/0:18,0:18:54:0,54,719 0/0:16,0:17:45:0,45,604 +chr5 13721378 rs17203442 A G 312.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.427;DB;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5905;MLEAC=1;MLEAF=0.125;MQ=39.10;MQ0=0;MQRankSum=-1.959;QD=15.65;ReadPosRankSum=-0.801;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,11:20:99:349,0,313 0/0:22,0:22:63:0,63,832 0/0:27,0:27:72:0,72,975 0/0:22,0:22:63:0,63,842 +chr5 13864728 rs6554827 C A 423.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.345;DB;DP=170;Dels=0.00;FS=2.261;HaplotypeScore=2.4062;MLEAC=1;MLEAF=0.125;MQ=36.54;MQ0=0;MQRankSum=0.506;QD=10.34;ReadPosRankSum=-0.014;SB=-1.600e+02 GT:AD:DP:GQ:PL 0/1:26,15:41:99:460,0,834 0/0:47,0:47:99:0,141,1740 0/0:39,0:39:99:0,114,1489 0/0:43,0:43:99:0,129,1557 +chr5 14293345 rs773767 G A 266.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.250;DB;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=39.45;MQ0=0;MQRankSum=0.017;QD=9.88;ReadPosRankSum=2.183;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:91:112,0,91 0/0:14,0:14:39:0,39,523 0/1:7,4:11:99:131,0,233 0/1:7,2:9:67:67,0,131 +chr5 14372440 rs419154 C T 75.25 . AC=3;AF=0.750;AN=4;BaseQRankSum=-0.727;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=36.72;MQ0=0;MQRankSum=0.727;QD=18.81;ReadPosRankSum=-0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3:43,3,0 0/1:1,2:3:27:67,0,27 +chr5 14400955 rs42206 T C 34.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.531;DB;DP=27;Dels=0.00;FS=2.625;HaplotypeScore=1.6790;MLEAC=3;MLEAF=0.375;MQ=21.50;MQ0=0;MQRankSum=0.524;QD=2.45;ReadPosRankSum=-0.698;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,1:6:3:0,3,44 0/0:6,0:7:6:0,6,88 0/1:3,1:4:26:37,0,26 1/1:9,1:10:3:38,3,0 +chr5 14482732 . A C 171.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.071;DP=68;Dels=0.01;FS=8.892;HaplotypeScore=9.5894;MLEAC=4;MLEAF=0.500;MQ=25.35;MQ0=0;MQRankSum=0.992;QD=2.52;ReadPosRankSum=0.172;SB=-1.301e+00 GT:AD:DP:GQ:PL 0/1:10,3:13:45:45,0,74 0/1:9,4:13:77:87,0,77 0/1:22,5:27:67:67,0,76 0/1:13,1:14:15:15,0,90 +chr5 14713685 . G T 51.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.380;DP=80;Dels=0.01;FS=40.467;HaplotypeScore=8.7184;MLEAC=4;MLEAF=0.500;MQ=35.34;MQ0=0;MQRankSum=-2.111;QD=0.65;ReadPosRankSum=-1.700;SB=-2.233e+00 GT:AD:DP:GQ:PL 0/1:12,2:14:28:28,0,351 0/1:15,4:19:37:37,0,425 0/1:24,3:27:26:26,0,644 0/1:18,1:19:1:1,0,438 +chr5 15451973 . T G 323.08 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.593;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=6.9551;MLEAC=7;MLEAF=0.875;MQ=17.24;MQ0=0;MQRankSum=2.305;QD=7.18;ReadPosRankSum=1.215;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,3:8:6:47,6,0 0/1:6,7:13:6:111,0,6 1/1:3,6:9:12:101,12,0 1/1:7,7:14:12:105,12,0 +chr5 16463421 . T G 1290.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.415;DP=172;Dels=0.00;FS=3.300;HaplotypeScore=13.4357;MLEAC=4;MLEAF=0.500;MQ=26.03;MQ0=0;MQRankSum=0.543;QD=7.50;ReadPosRankSum=4.865;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,21:49:99:406,0,199 0/1:35,18:53:99:347,0,328 0/1:33,23:56:99:485,0,240 0/1:10,4:14:80:95,0,80 +chr5 16463694 . G A 894.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.510;DP=238;Dels=0.01;FS=181.780;HaplotypeScore=23.5206;MLEAC=4;MLEAF=0.500;MQ=30.88;MQ0=0;MQRankSum=-5.678;QD=3.76;ReadPosRankSum=3.397;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:47,12:59:99:129,0,1082 0/1:44,16:60:99:326,0,926 0/1:54,14:69:99:184,0,1071 0/1:31,15:47:99:298,0,459 +chr5 16465326 . G C 83.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.197;DP=121;Dels=0.00;FS=103.528;HaplotypeScore=11.0661;MLEAC=2;MLEAF=0.250;MQ=23.50;MQ0=0;MQRankSum=-1.346;QD=1.37;ReadPosRankSum=0.601;SB=0.833 GT:AD:DP:GQ:PL 0/1:23,4:27:24:24,0,392 0/1:28,6:34:99:101,0,425 0/0:31,2:33:35:0,35,545 0/0:25,2:27:39:0,39,379 +chr5 16483310 rs17540484 T G 573.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.825;DB;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.5804;MLEAC=4;MLEAF=0.500;MQ=37.71;MQ0=0;MQRankSum=-1.975;QD=10.43;ReadPosRankSum=0.139;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,5:19:99:154,0,434 0/1:10,7:17:99:241,0,292 0/1:9,5:14:99:154,0,294 0/1:3,2:5:67:67,0,89 +chr5 16671492 . T C 295.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.347;DP=94;Dels=0.01;FS=15.291;HaplotypeScore=5.5700;MLEAC=3;MLEAF=0.375;MQ=30.34;MQ0=0;MQRankSum=-3.743;QD=3.48;ReadPosRankSum=2.526;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,5:28:69:69,0,357 0/1:21,9:30:99:195,0,429 0/1:22,4:26:75:75,0,337 0/0:7,2:9:21:0,21,236 +chr5 17216670 . A T 40.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.611;DP=83;Dels=0.00;FS=7.446;HaplotypeScore=4.8230;MLEAC=2;MLEAF=0.250;MQ=22.00;MQ0=0;MQRankSum=0.152;QD=0.99;ReadPosRankSum=3.875;SB=0.922 GT:AD:DP:GQ:PL 0/1:16,1:17:12:12,0,120 0/0:18,1:20:10:0,10,272 0/1:19,5:24:69:69,0,185 0/0:20,1:22:24:0,24,209 +chr5 17365515 . T A 41.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.3325;MLEAC=4;MLEAF=1.00;MQ=24.25;MQ0=0;MQRankSum=0.358;QD=5.13;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:33,3,0 ./. 1/1:3,2:5:3:41,3,0 ./. +chr5 18783485 rs2962233 A G 287.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.217;DB;DP=65;Dels=0.02;FS=2.662;HaplotypeScore=0.3681;MLEAC=4;MLEAF=0.500;MQ=20.74;MQ0=0;MQRankSum=-0.168;QD=7.19;ReadPosRankSum=1.091;SB=-1.016e+02 GT:AD:DP:GQ:PL 0/0:25,0:25:30:0,30,337 1/1:1,15:16:21:196,21,0 0/1:10,3:13:44:44,0,176 0/1:5,5:10:29:96,0,29 +chr5 21482878 rs62347258 C A 53.47 . AC=5;AF=0.833;AN=6;BaseQRankSum=2.854;DB;DP=54;Dels=0.00;FS=16.350;HaplotypeScore=0.6225;MLEAC=5;MLEAF=0.833;MQ=10.25;MQ0=0;MQRankSum=3.002;QD=1.30;ReadPosRankSum=-0.259;SB=3.20 GT:AD:DP:GQ:PL 1/1:5,2:7:6:44,6,0 ./. 0/1:17,1:18:16:23,0,16 1/1:15,1:16:3:25,3,0 +chr5 21491375 . T C 32.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.970;DP=453;Dels=0.00;FS=2.127;HaplotypeScore=5.2873;MLEAC=4;MLEAF=0.500;MQ=9.29;MQ0=0;MQRankSum=3.900;QD=0.07;ReadPosRankSum=-0.746;SB=-5.725e-01 GT:AD:DP:GQ:PL 0/1:107,1:108:17:17,0,127 0/1:119,7:126:5:5,0,138 0/1:125,2:129:21:21,0,160 0/1:87,2:90:31:31,0,80 +chr5 21817247 rs114414442 A G 594.22 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.781;DB;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9793;MLEAC=2;MLEAF=0.250;MQ=33.26;MQ0=0;MQRankSum=-2.129;QD=14.86;ReadPosRankSum=-0.119;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:10,10:20:99:298,0,224 0/0:22,0:22:48:0,48,605 0/1:9,11:20:99:337,0,188 0/0:6,0:6:6:0,6,70 +chr5 23972368 . T G 122.64 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.144;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=7.4560;MLEAC=5;MLEAF=0.625;MQ=22.46;MQ0=0;MQRankSum=0.337;QD=3.41;ReadPosRankSum=1.395;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:52:55,0,52 0/1:9,1:10:22:22,0,23 0/1:9,3:12:63:66,0,63 1/1:1,2:4:3:22,3,0 +chr5 24535140 rs41271089 T C 262.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.535;DB;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.2447;MLEAC=3;MLEAF=0.375;MQ=23.07;MQ0=0;MQRankSum=-0.792;QD=5.05;ReadPosRankSum=0.093;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:24:0,24,238 0/1:11,9:20:99:131,0,166 0/1:12,8:20:90:90,0,218 0/1:6,6:12:85:85,0,109 +chr5 31076540 rs7717530 C T 35.25 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.480;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.8425;MLEAC=3;MLEAF=0.500;MQ=23.61;MQ0=0;MQRankSum=1.271;QD=5.04;ReadPosRankSum=0.898;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:1,1:2:33:33,0,37 1/1:4,1:5:3:40,3,0 0/0:3,0:3:3:0,3,36 +chr5 31472087 rs6885959 T A 947.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.121;DB;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=4.5937;MLEAC=2;MLEAF=0.250;MQ=30.51;MQ0=0;MQRankSum=-0.157;QD=11.28;ReadPosRankSum=2.144;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,19:43:99:508,0,542 0/1:22,17:39:99:481,0,452 0/0:50,0:50:99:0,132,1585 0/0:29,0:29:72:0,72,770 +chr5 31526898 . G C 95.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.854;DP=113;Dels=0.00;FS=34.578;HaplotypeScore=18.6596;MLEAC=3;MLEAF=0.375;MQ=27.68;MQ0=0;MQRankSum=-0.077;QD=1.11;ReadPosRankSum=-1.392;SB=0.059 GT:AD:DP:GQ:PL 0/1:25,2:27:28:28,0,370 0/0:27,0:27:42:0,42,497 0/1:32,5:37:73:73,0,449 0/1:19,3:22:38:38,0,245 +chr5 32073984 . T C 833.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.043;DP=339;Dels=0.02;FS=56.244;HaplotypeScore=17.4306;MLEAC=4;MLEAF=0.500;MQ=34.87;MQ0=0;MQRankSum=-9.552;QD=2.46;ReadPosRankSum=-0.821;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:57,12:69:99:180,0,1773 0/1:75,18:93:99:253,0,2117 0/1:77,13:90:99:107,0,2410 0/1:63,18:81:99:336,0,1730 +chr5 32089747 . A C 79.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.757;DP=125;Dels=0.00;FS=6.924;HaplotypeScore=5.6392;MLEAC=2;MLEAF=0.250;MQ=31.86;MQ0=0;MQRankSum=-0.852;QD=1.40;ReadPosRankSum=-0.239;SB=-2.333e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:48:0,48,557 0/1:26,6:32:90:90,0,589 0/0:40,1:41:65:0,65,981 0/1:22,3:25:31:31,0,407 +chr5 32126178 . A C 126.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.805;DP=49;Dels=0.00;FS=6.128;HaplotypeScore=1.7294;MLEAC=4;MLEAF=0.500;MQ=29.04;MQ0=0;MQRankSum=-0.015;QD=3.33;ReadPosRankSum=2.231;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:42:42,0,210 0/0:10,1:11:1:0,1,245 0/1:13,2:15:32:32,0,162 0/1:5,4:9:65:93,0,65 +chr5 32355867 . T G 650.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.877;DP=100;Dels=0.00;FS=9.425;HaplotypeScore=10.7103;MLEAC=4;MLEAF=0.500;MQ=20.46;MQ0=0;MQRankSum=-0.192;QD=6.51;ReadPosRankSum=3.458;SB=-1.165e-02 GT:AD:DP:GQ:PL 0/1:12,16:28:3:187,0,3 0/1:18,14:32:75:249,0,75 0/1:14,13:27:65:194,0,65 0/1:8,5:13:14:62,0,14 +chr5 32712616 . A T 186.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.407;DP=199;Dels=0.03;FS=101.119;HaplotypeScore=7.4427;MLEAC=3;MLEAF=0.375;MQ=34.23;MQ0=0;MQRankSum=-4.089;QD=1.36;ReadPosRankSum=1.197;SB=0.780 GT:AD:DP:GQ:PL 0/1:36,7:43:99:111,0,861 0/1:41,6:47:60:60,0,1008 0/0:58,4:62:40:0,40,1451 0/1:37,5:42:59:59,0,870 +chr5 33461226 rs2270904 A G 933.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.897;DB;DP=142;Dels=0.00;FS=4.510;HaplotypeScore=1.5633;MLEAC=3;MLEAF=0.375;MQ=30.48;MQ0=0;MQRankSum=-1.716;QD=9.83;ReadPosRankSum=-0.670;SB=-3.190e+02 GT:AD:DP:GQ:PL 0/1:27,19:46:99:506,0,718 0/0:46,1:47:99:0,120,1422 0/1:18,12:30:99:319,0,393 0/1:11,8:19:99:152,0,202 +chr5 33936866 . C T 32.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.974;DP=121;Dels=0.00;FS=5.169;HaplotypeScore=3.9087;MLEAC=1;MLEAF=0.125;MQ=35.99;MQ0=0;MQRankSum=-2.418;QD=1.06;ReadPosRankSum=-0.510;SB=-1.136e-02 GT:AD:DP:GQ:PL 0/0:32,0:32:72:0,72,875 0/0:23,0:23:51:0,51,620 0/0:35,0:35:72:0,72,934 0/1:27,4:31:69:69,0,401 +chr5 34845473 rs336486 C A 1425.08 . AC=7;AF=0.875;AN=8;BaseQRankSum=4.432;DB;DP=50;Dels=0.00;FS=47.087;HaplotypeScore=1.5945;MLEAC=8;MLEAF=1.00;MQ=34.88;MQ0=0;MQRankSum=4.796;QD=28.50;ReadPosRankSum=0.039;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:9,12:21:36:492,36,0 0/1:4,7:11:0:249,0,0 1/1:0,10:10:30:388,30,0 1/1:0,8:8:24:334,24,0 +chr5 34845810 . C G 122.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.006;DP=61;Dels=0.03;FS=0.000;HaplotypeScore=11.4913;MLEAC=3;MLEAF=0.375;MQ=24.54;MQ0=0;MQRankSum=0.880;QD=2.22;ReadPosRankSum=0.796;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,6:20:99:118,0,141 0/1:12,2:14:38:38,0,83 0/1:18,1:19:8:8,0,125 0/0:6,0:6:9:0,9,71 +chr5 35033563 . A C 102.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.956;DP=86;Dels=0.02;FS=39.968;HaplotypeScore=9.2857;MLEAC=4;MLEAF=0.500;MQ=23.10;MQ0=0;MQRankSum=-2.804;QD=1.19;ReadPosRankSum=1.502;SB=-8.808e-01 GT:AD:DP:GQ:PL 0/1:14,5:19:64:64,0,132 0/1:23,6:31:21:21,0,186 0/1:15,1:17:5:5,0,210 0/1:12,5:17:54:54,0,92 +chr5 35763916 rs6895801 A G 651.94 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.216;DB;DP=25;Dels=0.04;FS=23.222;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=28.67;MQ0=0;MQRankSum=2.216;QD=26.08;ReadPosRankSum=-1.138;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,10:11:30:368,30,0 1/1:2,1:3:3:32,3,0 1/1:1,6:7:18:211,18,0 1/1:1,2:3:6:79,6,0 +chr5 35789273 . A G 85.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.612;DP=250;Dels=0.00;FS=29.700;HaplotypeScore=0.9412;MLEAC=2;MLEAF=0.250;MQ=36.09;MQ0=0;MQRankSum=-2.487;QD=0.82;ReadPosRankSum=-0.419;SB=-1.153e-02 GT:AD:DP:GQ:PL 0/0:71,2:73:99:0,109,1931 0/1:63,7:71:64:64,0,1519 0/0:72,1:73:99:0,109,1702 0/1:28,4:32:63:63,0,526 +chr5 35790237 . C G 100.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.106;DP=104;Dels=0.00;FS=21.160;HaplotypeScore=4.1530;MLEAC=4;MLEAF=0.500;MQ=24.46;MQ0=0;MQRankSum=0.714;QD=0.97;ReadPosRankSum=0.788;SB=-1.265e-02 GT:AD:DP:GQ:PL 0/1:26,4:30:39:39,0,372 0/1:29,4:33:42:42,0,294 0/1:28,4:32:40:40,0,328 0/1:8,1:9:22:22,0,39 +chr5 35838862 rs4311442 A G 50.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=23.01;MQ0=0;MQRankSum=0.736;QD=12.50;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:2,1:3:3:42,3,0 1/1:0,1:1:3:41,3,0 +chr5 35910419 rs1445899 C T 2301.63 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.283;DB;DP=96;Dels=0.00;FS=9.009;HaplotypeScore=2.0545;MLEAC=7;MLEAF=0.875;MQ=37.67;MQ0=0;MQRankSum=2.348;QD=23.98;ReadPosRankSum=2.387;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,22:26:66:853,66,0 0/1:29,6:35:99:156,0,923 1/1:2,28:30:84:1132,84,0 1/1:0,5:5:15:205,15,0 +chr5 37209419 . G T 51.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.825;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.2601;MLEAC=5;MLEAF=0.625;MQ=15.10;MQ0=0;MQRankSum=1.721;QD=1.32;ReadPosRankSum=0.306;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:17:17,0,18 0/1:7,1:9:14:14,0,54 0/1:10,2:12:17:17,0,45 1/1:7,3:11:6:47,6,0 +chr5 37213589 . T G 356.92 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.329;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=13.3798;MLEAC=5;MLEAF=0.625;MQ=27.07;MQ0=0;MQRankSum=0.880;QD=6.05;ReadPosRankSum=1.259;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:44:44,0,115 0/1:9,8:17:58:202,0,58 0/1:12,4:17:7:103,0,7 1/1:7,2:9:6:51,6,0 +chr5 37371184 . C G 63.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.851;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=3.7504;MLEAC=5;MLEAF=0.625;MQ=20.53;MQ0=0;MQRankSum=1.098;QD=7.07;ReadPosRankSum=0.676;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,3:7:9:74,9,0 0/0:4,0:4:3:0,3,35 1/1:0,2:2:3:33,3,0 0/0:4,0:4:3:0,3,28 +chr5 37722930 . A T 38.29 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.731;DP=92;Dels=0.02;FS=0.000;HaplotypeScore=10.1825;MLEAC=2;MLEAF=0.250;MQ=24.62;MQ0=0;MQRankSum=-2.121;QD=0.77;ReadPosRankSum=0.084;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,5:22:48:48,0,156 0/1:25,2:27:31:31,0,266 0/0:27,3:30:18:0,18,179 0/0:10,1:11:6:0,6,61 +chr5 37777744 . A G 33.26 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.898;DP=12;Dels=0.00;FS=18.195;HaplotypeScore=0.9425;MLEAC=4;MLEAF=0.667;MQ=15.29;MQ0=0;MQRankSum=1.733;QD=4.75;ReadPosRankSum=-1.271;SB=4.74 GT:AD:DP:GQ:PL 1/1:3,1:4:3:35,3,0 ./. 0/0:3,0:3:3:0,3,30 1/1:2,1:3:3:36,3,0 +chr5 38412733 . G C 233.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.240;DP=81;Dels=0.01;FS=77.604;HaplotypeScore=10.3725;MLEAC=4;MLEAF=0.500;MQ=26.45;MQ0=0;MQRankSum=-3.797;QD=2.88;ReadPosRankSum=0.895;SB=0.036 GT:AD:DP:GQ:PL 0/1:12,10:22:99:101,0,302 0/1:13,11:24:88:88,0,183 0/1:14,6:20:58:58,0,259 0/1:9,5:14:29:29,0,199 +chr5 38484879 . T A 265.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.209;DP=103;Dels=0.00;FS=12.571;HaplotypeScore=7.0209;MLEAC=4;MLEAF=0.500;MQ=32.01;MQ0=0;MQRankSum=-3.079;QD=2.58;ReadPosRankSum=2.580;SB=-1.781e-01 GT:AD:DP:GQ:PL 0/1:21,2:23:13:13,0,396 0/1:23,3:26:55:55,0,260 0/1:23,8:31:99:183,0,355 0/1:19,4:23:57:57,0,344 +chr5 38530485 rs11293177 CA C 502.64 . AC=8;AF=1.00;AN=8;DB;DP=26;FS=0.000;HaplotypeScore=5.7613;MLEAC=8;MLEAF=1.00;MQ=24.56;MQ0=0;QD=19.33;RPA=8,7;RU=A;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:3,4:6:15:144,15,0 1/1:3,6:7:15:169,15,0 1/1:1,6:6:18:202,18,0 1/1:2,1:1:3:35,3,0 +chr5 38820695 rs446650 G A 153.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.881;DB;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9728;MLEAC=2;MLEAF=0.250;MQ=23.19;MQ0=0;MQRankSum=-5.101;QD=2.84;ReadPosRankSum=2.739;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,99,1057 0/1:27,16:43:99:125,0,450 0/0:28,16:44:29:0,29,675 0/1:7,4:11:70:70,0,145 +chr5 38820752 rs143325273 TAAAGA T 2056.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.705;DB;DP=136;FS=0.000;HaplotypeScore=11.5527;MLEAC=3;MLEAF=0.375;MQ=24.35;MQ0=0;MQRankSum=-1.342;QD=23.10;ReadPosRankSum=2.221;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:12,20:23:4:1189,0,4 0/0:46,0:39:99:0,99,2548 0/1:29,13:24:99:632,0,1031 0/1:11,4:9:99:287,0,302 +chr5 38869090 . G C 123.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.553;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=4.8524;MLEAC=3;MLEAF=0.375;MQ=25.29;MQ0=0;MQRankSum=-0.930;QD=2.16;ReadPosRankSum=3.143;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,5:17:83:91,0,83 0/1:15,3:18:17:17,0,150 0/1:17,4:21:58:58,0,92 0/0:5,0:6:12:0,12,132 +chr5 39364358 rs700232 G A 33.31 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.061;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=35.38;MQ0=0;MQRankSum=-0.825;QD=11.10;ReadPosRankSum=-0.118;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,2:3:35:68,0,35 0/0:4,0:4:6:0,6,84 0/0:3,0:3:6:0,6,87 0/0:1,0:1:3:0,3,42 +chr5 39721133 . G C 33.37 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.142;DP=136;Dels=0.00;FS=42.529;HaplotypeScore=12.7428;MLEAC=2;MLEAF=0.250;MQ=20.79;MQ0=0;MQRankSum=2.742;QD=0.50;ReadPosRankSum=-0.846;SB=-3.193e+00 GT:AD:DP:GQ:PL 0/0:34,1:35:10:0,10,352 0/0:34,0:34:33:0,33,306 0/1:34,4:38:64:64,0,351 0/1:28,1:29:9:9,0,167 +chr5 41045768 rs325860 G A 3085.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.049;DB;DP=124;Dels=0.00;FS=68.844;HaplotypeScore=3.5529;MLEAC=8;MLEAF=1.00;MQ=28.53;MQ0=0;MQRankSum=4.579;QD=24.89;ReadPosRankSum=1.534;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,28:32:72:846,72,0 1/1:9,28:37:81:931,81,0 1/1:11,28:39:84:977,84,0 1/1:5,11:16:33:371,33,0 +chr5 42769647 rs12055266 T C 154.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.508;DB;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.2235;MLEAC=2;MLEAF=0.250;MQ=29.69;MQ0=0;MQRankSum=-1.873;QD=10.31;ReadPosRankSum=0.547;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:39:0,39,442 0/1:5,8:13:99:172,0,146 0/0:7,1:8:21:0,21,254 0/1:1,1:2:24:24,0,25 +chr5 43232448 . G C 138.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.625;DP=93;Dels=0.02;FS=92.160;HaplotypeScore=14.0631;MLEAC=4;MLEAF=0.500;MQ=19.77;MQ0=0;MQRankSum=2.617;QD=1.49;ReadPosRankSum=0.649;SB=-3.266e+00 GT:AD:DP:GQ:PL 0/1:18,4:22:53:53,0,157 0/1:23,2:25:1:1,0,222 0/1:23,4:27:69:69,0,188 0/1:15,2:17:56:56,0,133 +chr5 43298557 rs35239179 C T 772.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.998;DB;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=0.9313;MLEAC=4;MLEAF=0.500;MQ=34.65;MQ0=0;MQRankSum=-4.495;QD=6.66;ReadPosRankSum=-0.310;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,13:40:99:291,0,817 0/1:19,7:26:99:151,0,621 0/1:19,7:26:99:118,0,565 0/1:13,10:23:99:255,0,303 +chr5 44112449 . T G 71.25 . AC=5;AF=0.833;AN=6;BaseQRankSum=-0.031;DP=32;Dels=0.00;FS=5.724;HaplotypeScore=2.3726;MLEAC=5;MLEAF=0.833;MQ=16.07;MQ0=0;MQRankSum=0.850;QD=2.64;ReadPosRankSum=1.543;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:5,2:7:3:27,3,0 1/1:3,2:5:3:25,3,0 0/1:10,5:15:57:57,0,58 +chr5 50571182 rs10939904 C T 108.67 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.931;DB;DP=72;Dels=0.00;FS=0.972;HaplotypeScore=1.4093;MLEAC=2;MLEAF=0.250;MQ=16.59;MQ0=0;MQRankSum=0.841;QD=3.10;ReadPosRankSum=-0.597;SB=-5.269e+01 GT:AD:DP:GQ:PL 0/1:8,6:14:37:119,0,37 0/0:20,3:23:9:0,9,93 1/1:10,11:21:3:32,3,0 0/0:10,4:14:9:0,9,71 +chr5 52157299 . G C 264.59 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.914;DP=113;Dels=0.02;FS=18.562;HaplotypeScore=26.5881;MLEAC=5;MLEAF=0.625;MQ=22.87;MQ0=0;MQRankSum=0.584;QD=2.34;ReadPosRankSum=-0.302;SB=-1.192e-02 GT:AD:DP:GQ:PL 0/1:30,8:38:99:154,0,196 0/1:29,5:34:72:72,0,133 0/1:27,3:30:43:43,0,202 1/1:5,3:9:3:38,3,0 +chr5 52193414 rs57772138 C CA 1169.25 . AC=8;AF=1.00;AN=8;DB;DP=44;FS=0.000;HaplotypeScore=5.4981;MLEAC=8;MLEAF=1.00;MQ=35.96;MQ0=0;QD=26.57;RPA=3,4;RU=A;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:1,8:8:24:315,24,0 1/1:4,9:13:30:389,30,0 1/1:3,11:14:33:434,33,0 1/1:5,2:2:6:79,6,0 +chr5 52227986 . T G 206.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.340;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=4.1498;MLEAC=3;MLEAF=0.500;MQ=26.79;MQ0=0;MQRankSum=-3.743;QD=5.73;ReadPosRankSum=4.063;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,5:12:71:94,0,71 0/1:7,6:13:72:72,0,154 0/1:4,7:11:78:79,0,78 ./. +chr5 52367666 rs2287872 A T 56.25 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.322;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=32.75;MQ0=0;MQRankSum=-0.322;QD=11.25;ReadPosRankSum=0.322;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,1:2:34:34,0,35 1/1:1,1:2:3:41,3,0 0/0:3,0:3:9:0,9,106 1/1:0,1:1:3:25,3,0 +chr5 52781735 . T A 157.99 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.010;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=17.7029;MLEAC=2;MLEAF=0.250;MQ=31.44;MQ0=0;MQRankSum=-4.631;QD=1.76;ReadPosRankSum=3.425;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,7:43:99:121,0,515 0/0:49,4:54:54:0,54,947 0/1:39,7:46:78:78,0,820 0/0:26,2:29:8:0,8,325 +chr5 53408999 . A C 171.09 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.494;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.2365;MLEAC=3;MLEAF=0.375;MQ=31.33;MQ0=0;MQRankSum=0.057;QD=1.60;ReadPosRankSum=1.209;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,3:31:21:21,0,611 0/1:27,5:32:91:91,0,478 0/1:37,6:44:99:102,0,677 0/0:19,1:20:13:0,13,313 +chr5 53815066 rs2548613 C A 232.33 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.770;DB;DP=73;Dels=0.03;FS=1.189;HaplotypeScore=3.2002;MLEAC=7;MLEAF=0.875;MQ=14.84;MQ0=0;MQRankSum=-0.918;QD=3.18;ReadPosRankSum=0.851;SB=-1.062e+02 GT:AD:DP:GQ:PL 0/1:13,8:21:49:49,0,141 1/1:2,10:12:3:29,3,0 1/1:2,17:19:15:120,15,0 1/1:3,16:19:9:77,9,0 +chr5 54566350 . A G 169.94 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.389;DP=124;Dels=0.00;FS=17.773;HaplotypeScore=8.7719;MLEAC=4;MLEAF=0.500;MQ=25.13;MQ0=0;MQRankSum=-1.462;QD=1.37;ReadPosRankSum=0.334;SB=-3.672e-01 GT:AD:DP:GQ:PL 0/1:31,5:36:48:48,0,393 0/1:21,6:27:99:130,0,256 0/1:26,5:31:10:10,0,408 0/1:26,4:30:24:24,0,251 +chr5 54594439 . G T 156.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.858;DP=99;Dels=0.00;FS=24.300;HaplotypeScore=1.4795;MLEAC=3;MLEAF=0.375;MQ=29.12;MQ0=0;MQRankSum=0.350;QD=2.23;ReadPosRankSum=-0.106;SB=3.06 GT:AD:DP:GQ:PL 0/0:28,1:29:12:0,12,370 0/1:25,4:29:90:90,0,334 0/1:27,4:31:89:89,0,290 0/1:9,1:10:20:20,0,132 +chr5 54640891 . G A 168.34 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.687;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=2.6750;MLEAC=5;MLEAF=0.625;MQ=30.77;MQ0=0;MQRankSum=-1.890;QD=4.43;ReadPosRankSum=0.468;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:52:52,0,190 0/1:11,2:13:34:34,0,215 0/1:8,3:11:64:64,0,162 1/1:1,2:3:6:62,6,0 +chr5 54645488 . T A 83.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.716;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=14.1010;MLEAC=3;MLEAF=0.375;MQ=28.54;MQ0=0;MQRankSum=-1.015;QD=1.35;ReadPosRankSum=-1.891;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:41:41,0,93 0/0:32,0:33:51:0,51,590 0/1:29,3:33:36:36,0,384 0/1:7,2:9:50:50,0,80 +chr5 54710085 . T A 79.48 . AC=3;AF=0.500;AN=6;BaseQRankSum=2.579;DP=39;Dels=0.00;FS=3.010;HaplotypeScore=12.3832;MLEAC=3;MLEAF=0.500;MQ=16.60;MQ0=0;MQRankSum=0.083;QD=2.09;ReadPosRankSum=0.638;SB=-2.610e+00 GT:AD:DP:GQ:PL 0/1:8,3:11:20:20,0,54 0/1:12,4:17:24:84,0,24 0/1:7,3:10:14:14,0,49 ./. +chr5 54771433 rs6888824 G A 47.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=23.75;MQ0=0;MQRankSum=0.736;QD=15.67;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:39,3,0 1/1:1,1:2:3:41,3,0 ./. +chr5 54948593 . C A 108.03 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.138;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=8.8866;MLEAC=5;MLEAF=0.625;MQ=18.45;MQ0=0;MQRankSum=2.388;QD=1.71;ReadPosRankSum=-1.451;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:42:42,0,73 0/1:19,4:23:68:71,0,68 0/1:14,1:15:8:8,0,94 1/1:11,1:12:3:29,3,0 +chr5 55110834 . A T 31.47 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.551;DP=233;Dels=0.00;FS=73.968;HaplotypeScore=2.1742;MLEAC=2;MLEAF=0.250;MQ=33.52;MQ0=0;MQRankSum=-0.304;QD=0.25;ReadPosRankSum=-0.853;SB=-3.295e+00 GT:AD:DP:GQ:PL 0/1:42,5:49:63:63,0,1114 0/0:66,2:68:99:0,101,1733 0/1:72,6:78:8:8,0,1746 0/0:38,0:38:96:0,96,1076 +chr5 55455707 . G T 52.68 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.214;DP=155;Dels=0.01;FS=32.818;HaplotypeScore=23.7292;MLEAC=1;MLEAF=0.125;MQ=26.75;MQ0=0;MQRankSum=-3.544;QD=1.20;ReadPosRankSum=1.881;SB=-3.704e+01 GT:AD:DP:GQ:PL 0/0:39,6:45:4:0,4,558 0/0:35,4:39:8:0,8,599 0/1:37,6:43:88:88,0,295 0/0:26,1:27:45:0,45,454 +chr5 56778103 rs61737336 A G 1436.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.309;DB;DP=182;Dels=0.00;FS=9.812;HaplotypeScore=4.9245;MLEAC=3;MLEAF=0.375;MQ=26.97;MQ0=0;MQRankSum=2.207;QD=10.41;ReadPosRankSum=0.478;SB=-5.190e+02 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,108,1129 0/1:26,16:42:99:380,0,400 0/1:22,24:46:99:504,0,382 0/1:29,21:50:99:596,0,379 +chr5 57753437 rs2201293 G A 596.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.617;DB;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=36.92;MQ0=0;MQRankSum=-3.792;QD=12.70;ReadPosRankSum=0.298;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,0:22:57:0,57,766 0/1:9,7:16:99:227,0,203 0/1:11,14:25:99:392,0,344 0/1:5,1:6:21:21,0,112 +chr5 57878934 . A C 191.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.977;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2049;MLEAC=4;MLEAF=0.500;MQ=33.62;MQ0=0;MQRankSum=-0.156;QD=3.04;ReadPosRankSum=0.875;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:89:89,0,213 0/1:20,1:22:2:2,0,394 0/1:11,4:15:92:92,0,226 0/1:8,3:11:49:49,0,124 +chr5 59943287 . C T 135.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.254;DP=186;Dels=0.01;FS=114.248;HaplotypeScore=4.6682;MLEAC=3;MLEAF=0.375;MQ=34.86;MQ0=0;MQRankSum=-4.027;QD=0.95;ReadPosRankSum=1.753;SB=0.027 GT:AD:DP:GQ:PL 0/1:45,6:51:35:35,0,1341 0/0:43,0:43:99:0,117,1479 0/1:57,8:65:95:95,0,1576 0/1:19,6:25:49:49,0,601 +chr5 61662162 . T G 46.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.948;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.2483;MLEAC=2;MLEAF=0.250;MQ=32.71;MQ0=0;MQRankSum=-1.614;QD=2.45;ReadPosRankSum=1.002;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:46:46,0,153 0/1:8,2:10:41:41,0,143 0/0:13,1:14:9:0,9,345 0/0:3,0:3:6:0,6,74 +chr5 63802466 . GA G 225.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.102;DP=41;FS=0.000;HaplotypeScore=37.7959;MLEAC=4;MLEAF=0.500;MQ=19.68;MQ0=0;MQRankSum=0.959;QD=5.50;RPA=2,1;RU=A;ReadPosRankSum=0.178;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:9,3:5:19:70,0,19 0/1:7,1:4:17:28,0,17 0/1:5,2:4:29:72,0,29 0/1:6,2:9:73:107,0,73 +chr5 64522124 rs11746271 T C 382.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.463;DB;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7286;MLEAC=2;MLEAF=0.250;MQ=40.60;MQ0=0;MQRankSum=-1.740;QD=11.97;ReadPosRankSum=-1.240;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:30:0,30,418 0/1:10,6:16:99:194,0,334 0/1:9,7:16:99:230,0,291 0/0:3,0:3:9:0,9,128 +chr5 65054449 rs139140754 C T 65.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.002;DB;DP=157;Dels=0.00;FS=15.167;HaplotypeScore=4.4514;MLEAC=1;MLEAF=0.125;MQ=35.30;MQ0=0;MQRankSum=-2.411;QD=2.60;ReadPosRankSum=0.292;SB=-3.887e+00 GT:AD:DP:GQ:PL 0/0:39,3:43:15:0,15,945 0/0:41,0:41:78:0,78,1041 0/0:46,2:48:54:0,54,1220 0/1:19,5:25:99:101,0,443 +chr5 65054811 rs40107 A G 431.12 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.740;DB;DP=22;Dels=0.00;FS=26.723;HaplotypeScore=0.2499;MLEAC=5;MLEAF=0.625;MQ=30.40;MQ0=0;MQRankSum=1.331;QD=19.60;ReadPosRankSum=-0.921;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,4:4:12:126,12,0 0/1:3,6:9:22:215,0,22 0/1:1,3:4:28:102,0,28 0/1:4,1:5:33:33,0,34 +chr5 66479516 . A G 479.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.430;DP=250;Dels=0.00;FS=110.065;HaplotypeScore=15.0447;MLEAC=4;MLEAF=0.500;MQ=31.82;MQ0=0;MQRankSum=-5.742;QD=1.92;ReadPosRankSum=5.228;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:46,9:56:99:131,0,841 0/1:66,10:76:53:53,0,1242 0/1:56,11:67:99:106,0,1299 0/1:37,13:50:99:232,0,659 +chr5 67569391 rs2302974 A C 457.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.814;DB;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=37.05;MQ0=0;MQRankSum=-2.761;QD=6.02;ReadPosRankSum=0.380;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,132,1776 0/1:18,8:26:99:225,0,570 0/1:20,8:28:99:205,0,712 0/1:18,4:22:71:71,0,574 +chr5 68398900 . T A 642.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.047;DP=225;Dels=0.00;FS=2.790;HaplotypeScore=16.2285;MLEAC=4;MLEAF=0.500;MQ=29.21;MQ0=0;MQRankSum=-5.402;QD=2.86;ReadPosRankSum=4.333;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:50,16:67:99:237,0,605 0/1:48,10:59:99:163,0,441 0/1:55,16:75:99:196,0,487 0/1:18,6:24:89:89,0,95 +chr5 68669617 . G T 135.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.981;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=0.2496;MLEAC=4;MLEAF=0.500;MQ=30.36;MQ0=0;MQRankSum=2.492;QD=1.62;ReadPosRankSum=-1.025;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,2:23:26:26,0,265 0/1:23,3:27:40:40,0,270 0/1:21,2:23:16:16,0,332 0/1:7,3:10:16:96,0,16 +chr5 69784426 . A C 43.30 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.379;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.8100;MLEAC=4;MLEAF=0.667;MQ=15.83;MQ0=0;MQRankSum=1.720;QD=1.35;ReadPosRankSum=-0.671;SB=-3.695e+01 GT:AD:DP:GQ:PL ./. 0/1:17,2:19:29:29,0,102 0/1:4,2:6:31:31,0,33 1/1:5,2:7:3:22,3,0 +chr5 69805614 . C T 34.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.680;DP=40;Dels=0.03;FS=28.921;HaplotypeScore=3.5456;MLEAC=3;MLEAF=0.375;MQ=15.18;MQ0=0;MQRankSum=1.080;QD=1.14;ReadPosRankSum=1.140;SB=5.26 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,38 0/1:21,4:25:44:49,0,44 1/1:3,1:4:3:25,3,0 0/0:5,0:5:3:0,3,23 +chr5 70809169 rs1698063 A G 1522.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.153;DB;DP=301;Dels=0.00;FS=45.762;HaplotypeScore=0.9543;MLEAC=4;MLEAF=0.500;MQ=31.73;MQ0=0;MQRankSum=-0.216;QD=5.06;ReadPosRankSum=3.528;SB=-7.260e+02 GT:AD:DP:GQ:PL 0/1:63,23:86:99:559,0,1707 0/1:71,26:97:99:608,0,1942 0/1:65,17:82:99:347,0,1637 0/1:30,5:36:51:51,0,663 +chr5 70819663 . C T 101.28 . AC=5;AF=0.833;AN=6;BaseQRankSum=2.363;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.6039;MLEAC=5;MLEAF=0.833;MQ=19.44;MQ0=0;MQRankSum=0.998;QD=3.75;ReadPosRankSum=1.313;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,3:7:6:60,6,0 0/1:7,4:11:35:55,0,35 1/1:7,1:9:3:25,3,0 ./. +chr5 70834833 rs276590 G A 669.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.976;DB;DP=72;Dels=0.01;FS=2.422;HaplotypeScore=0.2416;MLEAC=4;MLEAF=0.500;MQ=34.26;MQ0=0;MQRankSum=-4.172;QD=9.30;ReadPosRankSum=1.489;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:9,9:18:99:247,0,233 0/1:13,6:19:99:163,0,464 0/1:16,10:26:99:186,0,546 0/1:3,5:8:87:116,0,87 +chr5 70837517 . T A 182.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.972;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0901;MLEAC=4;MLEAF=0.500;MQ=29.45;MQ0=0;MQRankSum=-0.893;QD=1.71;ReadPosRankSum=-1.275;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,5:27:90:90,0,353 0/1:36,4:40:40:40,0,835 0/1:27,3:31:25:25,0,489 0/1:5,3:9:11:70,0,11 +chr5 70888918 rs13173723 T A 96.26 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.825;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=0.750;MQ=26.58;MQ0=0;MQRankSum=-0.143;QD=8.75;ReadPosRankSum=0.387;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:33,3,0 0/1:4,1:5:21:21,0,100 1/1:1,2:3:6:57,6,0 0/1:1,1:2:23:28,0,23 +chr5 70895664 . T A 36.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.040;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.0218;MLEAC=1;MLEAF=0.125;MQ=35.56;MQ0=0;MQRankSum=-3.570;QD=1.24;ReadPosRankSum=1.040;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,5:29:72:72,0,302 0/0:22,1:23:23:0,23,514 0/0:32,2:34:40:0,40,722 0/0:10,0:10:12:0,12,163 +chr5 71494521 . C G 68.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.359;DP=129;Dels=0.01;FS=4.543;HaplotypeScore=2.0181;MLEAC=3;MLEAF=0.375;MQ=30.33;MQ0=0;MQRankSum=-0.517;QD=0.71;ReadPosRankSum=-3.134;SB=-1.571e+00 GT:AD:DP:GQ:PL 0/1:25,4:30:67:67,0,265 0/1:37,4:41:38:38,0,736 0/0:32,0:32:45:0,45,507 0/1:24,1:25:5:5,0,321 +chr5 72161479 . T A 71.76 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.846;DP=104;Dels=0.00;FS=29.522;HaplotypeScore=1.7245;MLEAC=2;MLEAF=0.250;MQ=28.56;MQ0=0;MQRankSum=-0.249;QD=1.04;ReadPosRankSum=1.556;SB=1.03 GT:AD:DP:GQ:PL 0/0:26,1:27:14:0,14,398 0/1:28,3:31:39:39,0,407 0/1:32,6:38:74:74,0,525 0/0:8,0:8:15:0,15,161 +chr5 72201058 rs250518 G A 325.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.057;DB;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0518;MLEAC=1;MLEAF=0.125;MQ=31.81;MQ0=0;MQRankSum=1.641;QD=11.64;ReadPosRankSum=2.165;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:51:0,51,648 0/1:17,11:28:99:362,0,332 0/0:27,0:27:51:0,51,654 0/0:10,0:10:27:0,27,364 +chr5 72377680 . C G 33.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.328;DP=227;Dels=0.00;FS=121.144;HaplotypeScore=20.2047;MLEAC=1;MLEAF=0.125;MQ=33.83;MQ0=0;MQRankSum=-2.809;QD=0.56;ReadPosRankSum=1.811;SB=-7.160e+00 GT:AD:DP:GQ:PL 0/0:54,5:59:0:0,0,1278 0/1:49,8:58:68:68,0,1353 0/0:68,3:71:99:0,106,1980 0/0:38,0:38:90:0,90,1096 +chr5 72498020 rs10942588 C T 35.77 . AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.70;MQ0=0;QD=17.89;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6:67,6,0 ./. ./. +chr5 72805121 . C T 264.69 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.827;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5206;MLEAC=6;MLEAF=0.750;MQ=12.50;MQ0=0;MQRankSum=2.174;QD=2.52;ReadPosRankSum=3.736;SB=2.82 GT:AD:DP:GQ:PL 1/1:18,7:25:9:93,9,0 0/1:16,4:20:18:18,0,32 0/1:18,6:24:18:46,0,18 1/1:24,12:36:15:153,15,0 +chr5 73142296 rs2973571 C T 2378.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.606;DB;DP=228;Dels=0.01;FS=4.112;HaplotypeScore=3.8123;MLEAC=4;MLEAF=0.500;MQ=38.32;MQ0=0;MQRankSum=-4.414;QD=10.43;ReadPosRankSum=2.650;SB=-9.801e+01 GT:AD:DP:GQ:PL 0/1:43,16:59:99:436,0,1316 0/1:48,23:71:99:705,0,1696 0/1:37,31:68:99:989,0,1212 0/1:18,10:28:99:291,0,621 +chr5 74325500 . T G 568.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.079;DP=196;Dels=0.00;FS=187.850;HaplotypeScore=9.5869;MLEAC=4;MLEAF=0.500;MQ=33.99;MQ0=0;MQRankSum=-3.919;QD=2.90;ReadPosRankSum=-0.625;SB=2.134e-03 GT:AD:DP:GQ:PL 0/1:42,7:50:99:139,0,870 0/1:48,12:60:99:238,0,1237 0/1:54,10:66:99:128,0,1246 0/1:14,6:20:99:106,0,333 +chr5 74677861 . A C 200.95 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.275;DP=108;Dels=0.00;FS=78.769;HaplotypeScore=2.9920;MLEAC=4;MLEAF=0.500;MQ=37.67;MQ0=0;MQRankSum=-2.115;QD=1.86;ReadPosRankSum=0.716;SB=-3.618e-01 GT:AD:DP:GQ:PL 0/1:21,5:27:80:80,0,552 0/1:29,6:35:99:136,0,765 0/1:36,3:40:11:11,0,913 0/1:5,1:6:16:16,0,110 +chr5 74876984 . G T 171.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.652;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=8.1195;MLEAC=4;MLEAF=0.500;MQ=21.65;MQ0=0;MQRankSum=-1.235;QD=4.19;ReadPosRankSum=3.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,4:10:63:63,0,92 0/1:7,7:14:36:36,0,57 0/1:7,6:13:69:88,0,69 0/1:2,1:3:27:27,0,34 +chr5 75427524 . A C 213.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.401;DP=66;Dels=0.05;FS=0.000;HaplotypeScore=8.1249;MLEAC=3;MLEAF=0.375;MQ=28.96;MQ0=0;MQRankSum=1.287;QD=3.89;ReadPosRankSum=1.173;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:35:35,0,125 0/1:15,2:17:46:46,0,197 0/1:11,7:18:48:176,0,48 0/0:11,0:11:18:0,18,169 +chr5 75806604 . T G 31.69 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.619;DP=51;Dels=0.00;FS=2.448;HaplotypeScore=3.7088;MLEAC=3;MLEAF=0.375;MQ=22.17;MQ0=0;MQRankSum=-0.038;QD=0.79;ReadPosRankSum=0.264;SB=-2.207e+00 GT:AD:DP:GQ:PL 0/1:7,2:9:29:29,0,136 0/1:11,4:15:41:41,0,104 0/1:15,1:16:1:1,0,228 0/0:11,0:11:9:0,9,94 +chr5 75932869 rs2910819 C T 1241.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.433;DB;DP=131;Dels=0.01;FS=7.945;HaplotypeScore=1.6702;MLEAC=3;MLEAF=0.375;MQ=35.02;MQ0=0;MQRankSum=-1.816;QD=15.52;ReadPosRankSum=2.539;SB=-3.190e+02 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,111,1402 1/1:2,27:29:81:1025,81,0 0/1:39,11:50:99:266,0,1254 0/0:10,0:10:24:0,24,287 +chr5 75970552 . T G 38.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.182;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9779;MLEAC=4;MLEAF=0.500;MQ=35.93;MQ0=0;MQRankSum=0.239;QD=0.44;ReadPosRankSum=0.575;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,2:22:22:22,0,347 0/1:23,2:26:37:37,0,329 0/1:25,1:26:3:3,0,292 0/1:12,1:13:17:17,0,138 +chr5 76003101 . T G 71.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.791;DP=63;Dels=0.02;FS=21.330;HaplotypeScore=6.0185;MLEAC=3;MLEAF=0.375;MQ=29.56;MQ0=0;MQRankSum=-1.905;QD=1.21;ReadPosRankSum=0.753;SB=-1.435e+00 GT:AD:DP:GQ:PL 0/1:16,5:21:73:73,0,299 0/1:17,1:19:5:5,0,292 0/1:16,2:18:33:33,0,199 0/0:2,2:4:3:0,3,40 +chr5 76348544 . T C 56.25 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.122;DP=47;Dels=0.04;FS=3.522;HaplotypeScore=15.5516;MLEAC=2;MLEAF=0.250;MQ=19.08;MQ0=0;MQRankSum=0.902;QD=2.01;ReadPosRankSum=0.212;SB=-2.047e+01 GT:AD:DP:GQ:PL 0/0:11,0:12:9:0,9,67 0/1:9,5:14:21:43,0,21 0/1:12,2:14:17:53,0,17 0/0:5,0:5:3:0,3,35 +chr5 76355423 . T A 60.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.937;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=15.2368;MLEAC=2;MLEAF=0.250;MQ=23.65;MQ0=0;MQRankSum=1.070;QD=1.17;ReadPosRankSum=-0.977;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:43,0:43:69:0,69,753 0/0:32,0:32:42:0,42,415 0/1:35,2:38:11:11,0,283 0/1:10,4:14:90:90,0,108 +chr5 77114598 rs1949026 A G 58.01 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.307;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9942;MLEAC=3;MLEAF=0.750;MQ=19.47;MQ0=0;MQRankSum=1.652;QD=6.45;ReadPosRankSum=1.652;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:3,3:6:6:64,6,0 0/1:2,1:3:29:30,0,29 ./. +chr5 78260263 . G C 82.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.477;DP=60;Dels=0.02;FS=13.997;HaplotypeScore=13.0262;MLEAC=3;MLEAF=0.375;MQ=21.96;MQ0=0;MQRankSum=0.707;QD=1.42;ReadPosRankSum=0.444;SB=1.95 GT:AD:DP:GQ:PL 0/1:13,3:16:43:43,0,54 0/1:16,1:18:10:10,0,135 0/1:18,4:23:70:70,0,223 0/0:2,0:2:3:0,3,43 +chr5 78296843 . G A 316.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.245;DP=199;Dels=0.00;FS=83.002;HaplotypeScore=8.4475;MLEAC=3;MLEAF=0.375;MQ=19.00;MQ0=0;MQRankSum=-1.082;QD=1.90;ReadPosRankSum=5.084;SB=9.73 GT:AD:DP:GQ:PL 0/1:28,10:38:99:184,0,107 0/1:47,18:67:99:108,0,306 0/1:44,16:61:67:67,0,255 0/0:28,4:33:12:0,12,136 +chr5 78586914 rs10043008 G T 1446.59 . AC=7;AF=0.875;AN=8;BaseQRankSum=4.706;DB;DP=70;Dels=0.04;FS=6.154;HaplotypeScore=0.9744;MLEAC=7;MLEAF=0.875;MQ=30.65;MQ0=0;MQRankSum=-2.087;QD=20.67;ReadPosRankSum=0.292;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,18:20:19:515,19,0 0/1:15,8:23:99:169,0,427 1/1:0,16:16:48:547,48,0 1/1:0,8:8:24:260,24,0 +chr5 79029288 rs1428223 C A 1756.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.014;DB;DP=284;Dels=0.00;FS=19.855;HaplotypeScore=5.0342;MLEAC=3;MLEAF=0.375;MQ=37.35;MQ0=0;MQRankSum=-5.481;QD=8.96;ReadPosRankSum=2.772;SB=-8.970e+02 GT:AD:DP:GQ:PL 0/1:48,20:68:99:565,0,1489 0/0:88,0:88:99:0,238,3122 0/1:49,30:80:99:856,0,1633 0/1:34,13:47:99:379,0,964 +chr5 79048545 . G A 134.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.421;DP=186;Dels=0.01;FS=0.000;HaplotypeScore=33.1530;MLEAC=3;MLEAF=0.375;MQ=31.44;MQ0=0;MQRankSum=-3.556;QD=1.07;ReadPosRankSum=1.075;SB=-5.919e+01 GT:AD:DP:GQ:PL 0/1:45,5:50:71:71,0,649 0/1:51,8:60:91:91,0,1052 0/0:56,3:60:21:0,21,1162 0/1:13,2:15:16:16,0,325 +chr5 79354728 rs434409 C T 69.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.945;DB;DP=25;Dels=0.00;FS=2.682;HaplotypeScore=0.4727;MLEAC=2;MLEAF=0.250;MQ=21.17;MQ0=0;MQRankSum=1.015;QD=5.36;ReadPosRankSum=-0.105;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,1:5:6:0,6,54 0/0:6,1:7:9:0,9,102 0/1:6,3:9:65:81,0,65 0/1:3,1:4:25:29,0,25 +chr5 79366053 . C G 72.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.911;DP=53;Dels=0.02;FS=4.217;HaplotypeScore=1.4577;MLEAC=3;MLEAF=0.375;MQ=32.67;MQ0=0;MQRankSum=-2.493;QD=1.87;ReadPosRankSum=0.791;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:62:62,0,287 0/1:9,2:11:30:30,0,201 0/0:13,1:14:21:0,21,295 0/1:9,3:12:24:24,0,187 +chr5 79741018 rs259034 T A 1299.23 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.662;DB;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4830;MLEAC=4;MLEAF=0.500;MQ=33.64;MQ0=0;MQRankSum=0.559;QD=16.04;ReadPosRankSum=0.846;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,8:22:99:184,0,388 1/1:7,18:26:5:635,5,0 0/1:16,17:33:99:523,0,380 0/0:3,0:3:3:0,3,36 +chr5 79797540 . A T 58.95 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.274;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=13.5274;MLEAC=5;MLEAF=0.625;MQ=16.44;MQ0=0;MQRankSum=2.343;QD=0.84;ReadPosRankSum=0.335;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:15,1:16:3:31,3,0 0/1:18,3:21:14:40,0,14 0/1:22,1:23:13:13,0,40 0/1:9,1:10:17:17,0,18 +chr5 80256765 . G C 76.37 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.794;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.3317;MLEAC=3;MLEAF=0.375;MQ=28.31;MQ0=0;MQRankSum=-2.178;QD=2.46;ReadPosRankSum=0.638;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:12:12,0,102 0/0:7,0:7:18:0,18,186 0/1:5,5:10:89:89,0,110 0/1:6,3:9:18:18,0,161 +chr5 80476059 . G C 30.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.724;DP=157;Dels=0.00;FS=6.724;HaplotypeScore=3.3429;MLEAC=1;MLEAF=0.125;MQ=36.05;MQ0=0;MQRankSum=-3.403;QD=1.03;ReadPosRankSum=-0.046;SB=-1.156e-02 GT:AD:DP:GQ:PL 0/0:39,3:42:58:0,58,1092 0/0:39,1:40:65:0,65,1134 0/0:43,2:45:61:0,61,1335 0/1:25,5:30:67:67,0,520 +chr5 80508274 . C T 41.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.813;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=8.1596;MLEAC=2;MLEAF=0.250;MQ=31.49;MQ0=0;MQRankSum=-0.573;QD=0.90;ReadPosRankSum=0.794;SB=-4.446e+01 GT:AD:DP:GQ:PL 0/1:19,3:22:57:57,0,239 0/0:27,1:28:34:0,34,519 0/0:30,1:31:35:0,35,554 0/1:21,2:23:26:26,0,311 +chr5 80809489 . T C 253.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.045;DP=178;Dels=0.00;FS=75.463;HaplotypeScore=19.7449;MLEAC=4;MLEAF=0.500;MQ=31.60;MQ0=0;MQRankSum=-4.870;QD=1.42;ReadPosRankSum=-0.073;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:35,5:40:65:65,0,623 0/1:49,7:56:58:58,0,929 0/1:43,5:48:38:38,0,715 0/1:26,8:34:99:135,0,231 +chr5 81572184 rs226200 G C 654.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.524;DB;DP=181;Dels=0.00;FS=11.195;HaplotypeScore=2.7142;MLEAC=2;MLEAF=0.250;MQ=34.37;MQ0=0;MQRankSum=2.332;QD=6.23;ReadPosRankSum=1.992;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:36,12:48:99:342,0,1064 0/1:43,12:57:99:354,0,970 0/0:52,0:52:99:0,129,1594 0/0:22,0:24:57:0,57,688 +chr5 82834009 rs35648048 G A 409 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.619;DB;DP=147;Dels=0.00;FS=1.037;HaplotypeScore=4.2796;MLEAC=1;MLEAF=0.125;MQ=31.01;MQ0=0;MQRankSum=0.704;QD=11.05;ReadPosRankSum=-0.665;SB=-2.060e+02 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,102,1191 0/1:20,16:37:99:445,0,407 0/0:57,0:57:99:0,153,1742 0/0:11,0:11:24:0,24,247 +chr5 85580189 . G C 34.32 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.869;DP=91;Dels=0.00;FS=7.336;HaplotypeScore=1.2749;MLEAC=2;MLEAF=0.333;MQ=13.95;MQ0=0;MQRankSum=1.665;QD=0.65;ReadPosRankSum=-1.742;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,0:17:6:0,6,60 0/1:26,1:27:23:23,0,23 ./. 0/1:22,4:26:16:49,0,16 +chr5 86633973 rs3752862 G A 1321.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.256;DB;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7322;MLEAC=4;MLEAF=0.500;MQ=31.91;MQ0=0;MQRankSum=-1.094;QD=9.94;ReadPosRankSum=1.895;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,19:40:99:467,0,527 0/1:19,16:35:99:429,0,485 0/1:31,14:45:99:359,0,1005 0/1:9,4:13:99:109,0,138 +chr5 86658348 . T A 49.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.707;DP=59;Dels=0.00;FS=4.909;HaplotypeScore=8.9354;MLEAC=3;MLEAF=0.375;MQ=24.17;MQ0=0;MQRankSum=-0.576;QD=0.91;ReadPosRankSum=1.464;SB=0.726 GT:AD:DP:GQ:PL 0/1:12,1:15:13:13,0,151 0/1:14,3:17:25:25,0,231 0/1:17,3:22:53:53,0,243 0/0:4,1:5:6:0,6,63 +chr5 88215156 . C A 86.32 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.500;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.8187;MLEAC=5;MLEAF=0.625;MQ=26.03;MQ0=0;MQRankSum=-0.033;QD=1.92;ReadPosRankSum=-0.833;SB=15.94 GT:AD:DP:GQ:PL 0/1:12,2:14:39:39,0,39 1/1:6,1:7:3:30,3,0 0/1:19,2:21:25:25,0,226 1/1:1,1:3:3:34,3,0 +chr5 89815312 rs142744843 G GA 184.19 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.204;DB;DP=50;FS=0.000;HaplotypeScore=2.3623;MLEAC=4;MLEAF=0.667;MQ=28.45;MQ0=0;MQRankSum=-0.286;QD=4.00;RPA=8,9;RU=A;ReadPosRankSum=1.919;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:14,3:15:64:64,0,166 1/1:11,4:11:9:119,9,0 0/1:8,2:6:26:51,0,26 ./. +chr5 89938605 . A G 53.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=-6.701;DP=355;Dels=0.00;FS=132.521;HaplotypeScore=11.8297;MLEAC=2;MLEAF=0.250;MQ=34.05;MQ0=0;MQRankSum=-4.012;QD=0.24;ReadPosRankSum=4.525;SB=-1.264e+00 GT:AD:DP:GQ:PL 0/1:97,11:108:37:37,0,2683 0/1:105,11:116:58:58,0,2846 0/0:95,8:103:79:0,79,2630 0/0:25,2:27:10:0,10,775 +chr5 89979817 . T G 152.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-6.712;DP=283;Dels=0.00;FS=181.472;HaplotypeScore=5.0555;MLEAC=2;MLEAF=0.250;MQ=36.36;MQ0=0;MQRankSum=-5.410;QD=1.48;ReadPosRankSum=1.925;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/0:77,4:81:99:0,102,2464 0/1:70,12:82:99:145,0,1994 0/0:91,7:99:44:0,44,2745 0/1:17,4:21:49:49,0,560 +chr5 90072414 . C A 178.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.641;DP=333;Dels=0.00;FS=22.470;HaplotypeScore=11.6306;MLEAC=2;MLEAF=0.250;MQ=34.66;MQ0=0;MQRankSum=-5.102;QD=1.21;ReadPosRankSum=-1.204;SB=-3.295e+00 GT:AD:DP:GQ:PL 0/1:85,9:94:99:103,0,1438 0/0:91,4:95:75:0,75,2024 0/0:87,4:91:2:0,2,1344 0/1:45,8:53:99:115,0,811 +chr5 90106010 . T A 423.39 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.837;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=7.1433;MLEAC=4;MLEAF=0.667;MQ=22.81;MQ0=0;MQRankSum=1.576;QD=9.20;ReadPosRankSum=2.511;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,5:14:41:122,0,41 1/1:7,8:15:18:182,18,0 0/1:10,7:17:58:161,0,58 ./. +chr5 90119324 rs2438378 G A 8899.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=7.637;DB;DP=301;Dels=0.00;FS=72.022;HaplotypeScore=10.1407;MLEAC=8;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=3.783;QD=29.56;ReadPosRankSum=4.511;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:15,58:73:61:2087,61,0 1/1:14,80:94:32:2839,32,0 1/1:14,60:74:38:2154,38,0 1/1:11,49:60:73:1819,73,0 +chr5 92226359 rs732478 G C 1153.79 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.498;DB;DP=68;Dels=0.01;FS=1.298;HaplotypeScore=3.8397;MLEAC=6;MLEAF=0.750;MQ=27.52;MQ0=0;MQRankSum=-0.132;QD=16.97;ReadPosRankSum=1.308;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:10,6:16:99:166,0,209 0/1:7,8:15:99:160,0,172 1/1:2,21:23:57:591,57,0 1/1:3,10:13:27:283,27,0 +chr5 93159773 . G T 66.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.794;DP=345;Dels=0.01;FS=0.000;HaplotypeScore=2.9565;MLEAC=2;MLEAF=0.250;MQ=34.72;MQ0=0;MQRankSum=-3.885;QD=0.47;ReadPosRankSum=-2.021;SB=-1.513e-01 GT:AD:DP:GQ:PL 0/1:100,10:110:19:19,0,2550 0/0:95,0:95:99:0,241,3108 0/0:107,2:109:99:0,245,3342 0/1:24,5:29:89:89,0,493 +chr5 93752958 . A G 71.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.231;DP=191;Dels=0.03;FS=54.303;HaplotypeScore=32.4684;MLEAC=2;MLEAF=0.250;MQ=29.93;MQ0=0;MQRankSum=-3.227;QD=0.83;ReadPosRankSum=3.449;SB=1.44 GT:AD:DP:GQ:PL 0/0:51,3:56:43:0,43,834 0/0:42,3:45:42:0,42,701 0/1:52,8:61:67:67,0,1003 0/1:19,4:23:46:46,0,240 +chr5 93856613 . A T 75.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.391;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.2498;MLEAC=3;MLEAF=0.375;MQ=30.39;MQ0=0;MQRankSum=-1.741;QD=1.43;ReadPosRankSum=3.180;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,3:24:22:22,0,315 0/1:21,4:25:39:39,0,443 0/0:21,0:21:24:0,24,263 0/1:2,2:4:23:58,0,23 +chr5 93987532 rs6891545 C A 1182.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.238;DB;DP=94;Dels=0.02;FS=6.851;HaplotypeScore=2.6991;MLEAC=5;MLEAF=0.625;MQ=34.65;MQ0=0;MQRankSum=-1.462;QD=12.58;ReadPosRankSum=0.062;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:20,7:27:99:180,0,591 1/1:9,21:30:40:763,40,0 0/1:18,8:26:99:232,0,529 0/1:7,2:9:53:53,0,131 +chr5 93989179 . C A 57.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.206;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.4371;MLEAC=3;MLEAF=0.375;MQ=23.71;MQ0=0;MQRankSum=0.568;QD=1.13;ReadPosRankSum=-0.843;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,6:21:58:58,0,171 0/0:25,1:26:6:0,6,274 0/1:15,2:17:2:2,0,266 0/1:11,2:13:37:37,0,49 +chr5 95124546 . A C 254.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.000;DP=85;Dels=0.00;FS=7.532;HaplotypeScore=4.1050;MLEAC=4;MLEAF=0.500;MQ=32.73;MQ0=0;MQRankSum=-0.330;QD=3.00;ReadPosRankSum=0.621;SB=-1.409e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:99:115,0,136 0/1:26,2:28:29:29,0,397 0/1:24,4:28:61:61,0,483 0/1:6,3:9:69:92,0,69 +chr5 96075817 . T G 205.23 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.232;DP=38;Dels=0.00;FS=16.910;HaplotypeScore=5.0101;MLEAC=4;MLEAF=0.667;MQ=22.42;MQ0=0;MQRankSum=0.695;QD=6.62;ReadPosRankSum=-2.433;SB=0.097 GT:AD:DP:GQ:PL 0/1:9,4:13:88:88,0,91 0/1:6,3:9:63:67,0,63 1/1:5,4:9:9:91,9,0 ./. +chr5 96101065 . AT A 129.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.049;DP=51;FS=0.000;HaplotypeScore=24.3869;MLEAC=4;MLEAF=0.500;MQ=14.69;MQ0=0;MQRankSum=0.049;QD=3.17;ReadPosRankSum=-0.830;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:9,2:4:25:25,0,36 0/1:14,1:5:27:32,0,27 0/1:9,4:6:0:122,0,0 0/0:6,2:2:4:0,4,14 +chr5 96116112 rs34765952 AT A 83.15 . AC=3;AF=0.750;AN=4;BaseQRankSum=-0.736;DB;DP=43;FS=0.000;HaplotypeScore=10.3900;MLEAC=3;MLEAF=0.750;MQ=18.86;MQ0=0;MQRankSum=0.736;QD=2.87;RPA=12,11;RU=T;ReadPosRankSum=-0.736;SB=-1.476e-03;STR GT:AD:DP:GQ:PL ./. 0/1:9,3:7:14:72,0,14 1/1:12,3:8:6:56,6,0 ./. +chr5 96117579 rs72773923 G A 115.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.489;DB;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=0.9355;MLEAC=1;MLEAF=0.125;MQ=39.43;MQ0=0;MQRankSum=-1.834;QD=7.73;ReadPosRankSum=0.258;SB=-1.174e-02 GT:AD:DP:GQ:PL 0/1:10,5:15:99:152,0,339 0/0:15,0:15:36:0,36,503 0/0:21,0:21:60:0,60,813 0/0:18,0:18:42:0,42,541 +chr5 96271445 . C A 34.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.520;DP=80;Dels=0.00;FS=2.337;HaplotypeScore=4.2154;MLEAC=1;MLEAF=0.125;MQ=34.66;MQ0=0;MQRankSum=-1.174;QD=1.62;ReadPosRankSum=0.276;SB=-2.274e+00 GT:AD:DP:GQ:PL 0/0:14,1:16:2:0,2,313 0/0:21,1:22:25:0,25,617 0/0:20,1:21:6:0,6,478 0/1:17,4:21:69:69,0,227 +chr5 96363407 rs27300 C T 817.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.831;DB;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=0.2416;MLEAC=4;MLEAF=0.500;MQ=33.47;MQ0=0;MQRankSum=-4.915;QD=10.22;ReadPosRankSum=-0.546;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,8:22:99:178,0,459 0/1:14,11:25:99:311,0,477 0/1:12,11:23:99:317,0,332 0/1:6,3:9:54:54,0,141 +chr5 97912244 . C G 181.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.403;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.9152;MLEAC=3;MLEAF=0.375;MQ=13.11;MQ0=0;MQRankSum=4.391;QD=1.50;ReadPosRankSum=-2.141;SB=-1.467e-01 GT:AD:DP:GQ:PL 0/0:33,0:33:9:0,9,83 0/1:40,1:41:13:13,0,43 0/1:41,2:43:46:66,0,46 0/1:31,5:37:99:145,0,115 +chr5 98240832 . A G 37.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.055;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=10.0919;MLEAC=3;MLEAF=0.375;MQ=26.24;MQ0=0;MQRankSum=-0.838;QD=0.56;ReadPosRankSum=1.799;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:35,2:37:0:0,0,418 0/1:36,3:40:7:7,0,554 0/0:34,2:36:2:0,2,432 0/1:21,4:25:66:66,0,276 +chr5 98860049 . A C 113.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.716;DP=172;Dels=0.00;FS=13.247;HaplotypeScore=11.0681;MLEAC=3;MLEAF=0.375;MQ=13.56;MQ0=0;MQRankSum=4.182;QD=0.83;ReadPosRankSum=-0.764;SB=-2.670e+01 GT:AD:DP:GQ:PL 0/0:32,1:35:6:0,6,55 0/1:34,1:36:23:23,0,57 0/1:45,5:50:54:54,0,178 0/1:41,8:51:79:79,0,102 +chr5 99725815 . T A 102.90 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.783;DP=251;Dels=0.00;FS=118.557;HaplotypeScore=3.5930;MLEAC=4;MLEAF=0.500;MQ=12.87;MQ0=0;MQRankSum=1.676;QD=0.41;ReadPosRankSum=-2.237;SB=-4.064e+00 GT:AD:DP:GQ:PL 0/1:45,7:52:15:15,0,166 0/1:64,6:70:14:14,0,270 0/1:51,8:59:99:110,0,210 0/1:59,9:68:5:5,0,330 +chr5 99897684 . A T 44.28 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.036;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.3329;MLEAC=3;MLEAF=0.500;MQ=21.73;MQ0=0;MQRankSum=0.365;QD=4.43;ReadPosRankSum=-0.741;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:18:40,0,18 1/1:2,1:3:3:42,3,0 0/0:4,0:4:3:0,3,34 ./. +chr5 101794061 . GT G 363.57 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.837;DP=76;FS=0.000;HaplotypeScore=33.4609;MLEAC=3;MLEAF=0.500;MQ=20.53;MQ0=0;MQRankSum=1.771;QD=5.27;RPA=2,1;RU=T;ReadPosRankSum=-0.702;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:10,8:12:9:96,0,9 0/1:13,11:12:16:146,0,16 0/1:16,7:13:19:169,0,19 ./. +chr5 101813238 rs10041525 T C 50.82 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.589;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=0.500;MQ=26.58;MQ0=0;MQRankSum=1.589;QD=25.41;ReadPosRankSum=-1.067;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:9:0,9,101 1/1:0,2:2:6:87,6,0 ./. ./. +chr5 102891695 rs10045774 A G 2994.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.410;DB;DP=116;Dels=0.00;FS=3.273;HaplotypeScore=2.8830;MLEAC=8;MLEAF=1.00;MQ=30.52;MQ0=0;MQRankSum=1.263;QD=25.82;ReadPosRankSum=2.214;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:5,27:32:49:837,49,0 1/1:4,30:34:81:968,81,0 1/1:8,28:36:49:864,49,0 1/1:3,11:14:30:365,30,0 +chr5 107197423 . A C 52.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.610;DP=67;Dels=0.01;FS=16.397;HaplotypeScore=6.3487;MLEAC=2;MLEAF=0.250;MQ=31.10;MQ0=0;MQRankSum=-0.509;QD=1.35;ReadPosRankSum=-1.583;SB=1.39 GT:AD:DP:GQ:PL 0/1:17,3:20:44:44,0,348 0/0:13,0:13:27:0,27,356 0/1:16,3:19:50:50,0,326 0/0:14,0:14:27:0,27,325 +chr5 107197449 . G A 101.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.709;DP=65;Dels=0.00;FS=43.405;HaplotypeScore=2.2348;MLEAC=4;MLEAF=0.500;MQ=33.02;MQ0=0;MQRankSum=-0.798;QD=1.56;ReadPosRankSum=0.798;SB=-1.437e+00 GT:AD:DP:GQ:PL 0/1:13,3:16:67:67,0,271 0/1:14,2:16:38:38,0,312 0/1:18,2:20:3:3,0,378 0/1:11,2:13:34:34,0,235 +chr5 107703446 rs140305325 CAAG C 298.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.539;DB;DP=87;FS=0.000;HaplotypeScore=13.7820;MLEAC=1;MLEAF=0.125;MQ=34.90;MQ0=0;MQRankSum=-2.960;QD=11.04;RPA=2,1;RU=AAG;ReadPosRankSum=1.120;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:17,8:26:99:343,0,746 0/0:32,0:32:93:0,93,1710 0/0:21,0:22:54:0,54,991 0/0:6,0:5:12:0,12,231 +chr5 108382742 rs72790585 T C 293.78 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.237;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.5388;MLEAC=5;MLEAF=0.625;MQ=33.95;MQ0=0;MQRankSum=1.003;QD=24.48;ReadPosRankSum=1.003;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,40 0/1:1,4:5:27:138,0,27 1/1:0,4:4:12:159,12,0 1/1:2,1:3:3:41,3,0 +chr5 108673063 . GA G 130.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.525;DP=115;FS=0.000;HaplotypeScore=14.6322;MLEAC=2;MLEAF=0.250;MQ=33.49;MQ0=0;MQRankSum=0.856;QD=2.46;RPA=10,9;RU=A;ReadPosRankSum=2.200;SB=-1.475e-03;STR GT:AD:DP:GQ:PL 0/1:21,3:23:22:22,0,285 0/0:28,1:27:23:0,23,470 0/0:32,0:31:66:0,66,627 0/1:21,7:27:99:159,0,353 +chr5 108679947 . C G 33.37 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.211;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=8.0742;MLEAC=3;MLEAF=0.375;MQ=25.47;MQ0=0;MQRankSum=-2.040;QD=1.15;ReadPosRankSum=1.430;SB=3.99 GT:AD:DP:GQ:PL 0/1:12,3:16:36:36,0,113 0/0:13,2:16:0:0,0,204 0/1:9,3:13:35:35,0,114 0/0:2,0:3:3:0,3,34 +chr5 108680647 rs441798 C A 90.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.265;DB;DP=22;Dels=0.00;FS=5.563;HaplotypeScore=1.7743;MLEAC=2;MLEAF=0.250;MQ=24.17;MQ0=0;MQRankSum=2.283;QD=7.58;ReadPosRankSum=-1.115;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,189 0/1:5,3:8:19:104,0,19 0/1:3,1:4:19:27,0,19 0/0:2,0:2:3:0,3,44 +chr5 110096947 . A C 120.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.531;DP=197;Dels=0.01;FS=48.935;HaplotypeScore=10.1620;MLEAC=2;MLEAF=0.250;MQ=37.47;MQ0=0;MQRankSum=-4.890;QD=1.03;ReadPosRankSum=2.400;SB=-2.114e+00 GT:AD:DP:GQ:PL 0/1:38,5:43:62:62,0,903 0/0:54,3:59:39:0,39,1388 0/1:62,9:73:99:99,0,1517 0/0:19,1:21:3:0,3,445 +chr5 110284247 rs142766313 CTAT C 1071.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.297;DB;DP=131;FS=7.672;HaplotypeScore=11.0836;MLEAC=4;MLEAF=0.500;MQ=21.59;MQ0=0;MQRankSum=-4.029;QD=8.18;ReadPosRankSum=-1.904;SB=-2.010e+02 GT:AD:DP:GQ:PL 0/1:28,9:17:99:323,0,636 0/1:28,11:24:99:450,0,864 0/1:24,10:15:99:267,0,579 0/1:14,4:14:83:83,0,647 +chr5 110679657 rs446176 C G 2812.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.143;DB;DP=178;Dels=0.00;FS=8.958;HaplotypeScore=0.4825;MLEAC=5;MLEAF=0.625;MQ=39.63;MQ0=0;MQRankSum=1.463;QD=15.80;ReadPosRankSum=3.600;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:41,12:53:99:352,0,1204 1/1:5,40:45:99:1674,120,0 0/1:39,18:57:99:581,0,1235 0/1:15,8:23:99:251,0,425 +chr5 110782274 rs3797739 C A 176.53 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.203;DB;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.1677;MLEAC=5;MLEAF=0.833;MQ=26.83;MQ0=0;MQRankSum=2.054;QD=13.58;ReadPosRankSum=0.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:12:144,12,0 0/1:4,1:5:17:34,0,17 1/1:2,1:3:3:38,3,0 ./. +chr5 112045831 rs1465910 T C 82.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.727;DB;DP=9;Dels=0.00;FS=3.680;HaplotypeScore=0.2892;MLEAC=4;MLEAF=1.00;MQ=20.71;MQ0=0;MQRankSum=0.727;QD=13.70;ReadPosRankSum=-0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:2:3:41,3,0 1/1:2,2:4:6:75,6,0 +chr5 112181379 rs448475 C G 47.01 . AC=4;AF=1.00;AN=4;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=26.30;MQ0=0;QD=23.50;SB=-3.700e+01 GT:AD:DP:GQ:PL 1/1:0,1:1:3:40,3,0 ./. ./. 1/1:0,1:1:3:40,3,0 +chr5 112321488 rs33543 A G 93 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.544;DB;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7969;MLEAC=1;MLEAF=0.125;MQ=35.44;MQ0=0;MQRankSum=-1.473;QD=3.58;ReadPosRankSum=0.022;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,105,1314 0/1:20,6:26:99:129,0,659 0/0:30,0:30:81:0,81,1039 0/0:8,0:8:21:0,21,249 +chr5 112850963 rs1035409 G A 442.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.253;DB;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.9680;MLEAC=1;MLEAF=0.125;MQ=32.49;MQ0=0;MQRankSum=-2.630;QD=11.07;ReadPosRankSum=1.543;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,18:40:99:479,0,567 0/0:30,0:30:81:0,81,988 0/0:36,0:37:99:0,102,1230 0/0:12,0:12:36:0,36,437 +chr5 114506852 . G T 406.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.939;DP=206;Dels=0.01;FS=95.305;HaplotypeScore=5.9299;MLEAC=4;MLEAF=0.500;MQ=37.44;MQ0=0;MQRankSum=-5.143;QD=1.97;ReadPosRankSum=2.715;SB=-1.544e-02 GT:AD:DP:GQ:PL 0/1:55,5:60:30:30,0,1431 0/1:38,13:51:99:251,0,1013 0/1:59,7:67:79:79,0,1606 0/1:21,5:26:89:89,0,418 +chr5 114847770 . C A 81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.841;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.7842;MLEAC=3;MLEAF=0.375;MQ=29.80;MQ0=0;MQRankSum=0.780;QD=2.70;ReadPosRankSum=-0.031;SB=-3.699e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:15:0,15,155 0/1:7,1:8:21:21,0,148 0/1:12,2:14:46:46,0,128 0/1:6,2:8:53:57,0,53 +chr5 115469668 rs17138918 T C 183.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.212;DB;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=1.7316;MLEAC=4;MLEAF=0.500;MQ=30.81;MQ0=0;MQRankSum=0.531;QD=7.33;ReadPosRankSum=0.902;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:27:0,27,327 0/1:11,3:15:82:82,0,270 0/1:3,2:5:34:72,0,34 1/1:2,2:4:6:75,6,0 +chr5 115783279 . A C 1021.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.545;DP=161;Dels=0.01;FS=103.188;HaplotypeScore=14.0594;MLEAC=4;MLEAF=0.500;MQ=27.73;MQ0=0;MQRankSum=-2.104;QD=6.35;ReadPosRankSum=3.378;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,11:39:99:257,0,376 0/1:30,10:41:99:169,0,507 0/1:20,18:38:99:360,0,395 0/1:28,14:42:99:278,0,496 +chr5 115815649 rs73270774 G C 73.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.361;DB;DP=12;Dels=0.00;FS=3.522;HaplotypeScore=0.1663;MLEAC=4;MLEAF=0.500;MQ=28.10;MQ0=0;MQRankSum=0.361;QD=12.28;ReadPosRankSum=-1.307;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:6:0,6,75 0/0:3,1:4:6:0,6,81 1/1:1,2:3:6:76,6,0 1/1:2,1:3:3:42,3,0 +chr5 115827356 rs154599 C T 1771.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.589;DB;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=2.0687;MLEAC=4;MLEAF=0.500;MQ=36.72;MQ0=0;MQRankSum=-3.981;QD=15.96;ReadPosRankSum=-0.201;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,117,1620 1/1:6,27:33:60:953,60,0 0/1:17,16:33:99:526,0,441 0/1:31,13:44:99:341,0,949 +chr5 115898740 . A T 139.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.103;DP=65;Dels=0.00;FS=5.018;HaplotypeScore=3.1573;MLEAC=4;MLEAF=0.500;MQ=24.96;MQ0=0;MQRankSum=0.428;QD=2.15;ReadPosRankSum=0.458;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:45:45,0,160 0/1:13,3:16:17:17,0,102 0/1:20,2:23:42:42,0,104 0/1:11,3:14:78:78,0,83 +chr5 116052003 rs2964702 T C 439.88 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.967;DB;DP=199;Dels=0.00;FS=12.212;HaplotypeScore=1.9593;MLEAC=5;MLEAF=0.625;MQ=10.81;MQ0=0;MQRankSum=-1.751;QD=2.21;ReadPosRankSum=2.297;SB=-4.548e+01 GT:AD:DP:GQ:PL 1/1:11,32:43:15:168,15,0 0/1:8,42:50:19:100,0,19 0/1:11,46:57:5:134,0,5 0/1:18,31:49:82:82,0,82 +chr5 118503351 rs150598701 C A 108.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.348;DB;DP=63;Dels=0.00;FS=2.496;HaplotypeScore=3.2284;MLEAC=2;MLEAF=0.250;MQ=32.19;MQ0=0;MQRankSum=-0.238;QD=4.95;ReadPosRankSum=1.702;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,5:14:99:125,0,118 0/0:20,0:20:30:0,30,319 0/0:20,1:21:0:0,0,220 0/1:7,1:8:23:23,0,56 +chr5 118507769 rs112857876 A C 298.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.459;DB;DP=46;Dels=0.02;FS=5.252;HaplotypeScore=1.5290;MLEAC=3;MLEAF=0.375;MQ=33.02;MQ0=0;MQRankSum=-2.464;QD=12.45;ReadPosRankSum=-0.125;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:57:57,0,131 0/0:21,0:21:51:0,51,707 0/1:8,8:16:81:252,0,81 1/1:0,1:1:3:34,3,0 +chr5 118814580 . C A 42.57 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.722;DP=147;Dels=0.00;FS=56.031;HaplotypeScore=22.0403;MLEAC=1;MLEAF=0.125;MQ=23.50;MQ0=0;MQRankSum=1.577;QD=1.12;ReadPosRankSum=-0.835;SB=20.51 GT:AD:DP:GQ:PL 0/0:41,1:42:15:0,15,467 0/1:33,5:38:78:78,0,341 0/0:37,1:40:12:0,12,343 0/0:27,0:27:27:0,27,322 +chr5 118837834 rs55708333 A G 1205.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.800;DB;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=0.5784;MLEAC=5;MLEAF=0.625;MQ=33.86;MQ0=0;MQRankSum=1.230;QD=10.22;ReadPosRankSum=0.668;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,12:45:99:280,0,1051 1/1:13,15:28:45:589,45,0 0/1:26,10:36:99:287,0,762 0/1:5,3:8:95:95,0,110 +chr5 118861042 . T A 34.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.784;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9614;MLEAC=1;MLEAF=0.125;MQ=33.19;MQ0=0;MQRankSum=-2.301;QD=1.79;ReadPosRankSum=1.551;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:25,0:25:63:0,63,758 0/1:15,4:19:70:70,0,255 0/0:20,1:21:21:0,21,435 0/0:6,0:6:12:0,12,124 +chr5 119016810 . A C 30.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.317;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=1.3027;MLEAC=3;MLEAF=0.375;MQ=28.06;MQ0=0;MQRankSum=0.069;QD=0.71;ReadPosRankSum=1.858;SB=1.32 GT:AD:DP:GQ:PL 0/1:12,2:14:43:43,0,160 0/1:14,1:15:16:16,0,161 0/0:18,1:19:3:0,3,252 0/1:11,2:13:12:12,0,172 +chr5 121297818 . T C 37.76 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.285;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1734;MLEAC=2;MLEAF=0.250;MQ=34.43;MQ0=0;MQRankSum=-0.629;QD=0.73;ReadPosRankSum=1.037;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,3:28:21:21,0,495 0/1:21,3:24:58:58,0,392 0/0:23,0:23:51:0,51,542 0/0:24,1:26:15:0,15,477 +chr5 121405810 . A C 61.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.050;DP=348;Dels=0.00;FS=117.282;HaplotypeScore=2.7286;MLEAC=2;MLEAF=0.250;MQ=38.86;MQ0=0;MQRankSum=-2.481;QD=0.41;ReadPosRankSum=-0.088;SB=-6.411e-01 GT:AD:DP:GQ:PL 0/0:96,2:98:99:0,149,2570 0/1:80,8:88:33:33,0,1992 0/0:92,6:99:43:0,43,2372 0/1:56,7:63:70:70,0,1207 +chr5 122515906 . T A 729.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.685;DP=200;Dels=0.00;FS=138.859;HaplotypeScore=5.3984;MLEAC=4;MLEAF=0.500;MQ=31.81;MQ0=0;MQRankSum=-2.408;QD=3.65;ReadPosRankSum=3.058;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:36,9:45:99:172,0,790 0/1:34,12:46:99:274,0,737 0/1:45,7:52:98:98,0,1026 0/1:46,11:57:99:228,0,1012 +chr5 122722367 rs148885907 AT A 292.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.832;DB;DP=66;FS=0.000;HaplotypeScore=7.8002;MLEAC=4;MLEAF=0.500;MQ=32.35;MQ0=0;MQRankSum=-2.270;QD=4.43;RPA=3,2;RU=T;ReadPosRankSum=0.562;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:12,1:11:19:19,0,221 0/1:17,2:15:99:115,0,218 0/1:14,5:12:99:103,0,105 0/1:6,3:6:32:107,0,32 +chr5 124036810 . A G 43.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.687;DP=264;Dels=0.00;FS=50.632;HaplotypeScore=2.8810;MLEAC=2;MLEAF=0.250;MQ=37.18;MQ0=0;MQRankSum=0.482;QD=0.35;ReadPosRankSum=-0.579;SB=0.659 GT:AD:DP:GQ:PL 0/0:70,3:73:98:0,98,2259 0/1:49,5:54:30:30,0,1466 0/0:63,4:67:31:0,31,1807 0/1:63,6:69:55:55,0,1727 +chr5 125808995 . G T 53.47 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.839;DP=101;Dels=0.00;FS=26.279;HaplotypeScore=1.7736;MLEAC=2;MLEAF=0.250;MQ=35.60;MQ0=0;MQRankSum=-1.975;QD=1.27;ReadPosRankSum=-0.008;SB=-1.717e+00 GT:AD:DP:GQ:PL 0/1:28,5:33:85:85,0,622 0/0:30,0:30:57:0,57,677 0/0:29,0:29:72:0,72,910 0/1:8,1:9:8:8,0,247 +chr5 125906607 rs180985029 A G 602.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.638;DB;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.9714;MLEAC=1;MLEAF=0.125;MQ=33.52;MQ0=0;MQRankSum=0.374;QD=13.11;ReadPosRankSum=-0.802;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:49,1:50:98:0,98,1568 0/1:26,20:46:99:639,0,630 0/0:47,0:47:99:0,126,1565 0/0:21,0:21:54:0,54,659 +chr5 126140350 rs968355 A G 205.46 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.887;DB;DP=21;Dels=0.05;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=36.29;MQ0=0;MQRankSum=-0.634;QD=15.80;ReadPosRankSum=0.127;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:21:0,21,256 1/1:0,4:4:12:159,12,0 0/1:4,2:6:65:65,0,116 0/1:2,1:3:29:29,0,30 +chr5 126387670 . T G 91.77 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.258;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.2684;MLEAC=3;MLEAF=0.375;MQ=36.99;MQ0=0;MQRankSum=0.121;QD=1.08;ReadPosRankSum=-0.581;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,2:22:35:35,0,149 0/1:24,2:26:12:12,0,322 0/1:31,5:37:87:87,0,399 0/0:6,0:6:9:0,9,81 +chr5 126732244 . G T 32.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.949;DP=184;Dels=0.00;FS=62.785;HaplotypeScore=6.8095;MLEAC=2;MLEAF=0.250;MQ=30.90;MQ0=0;MQRankSum=-0.042;QD=0.39;ReadPosRankSum=0.022;SB=-5.146e-01 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,99,1158 0/1:32,3:35:28:28,0,709 0/0:59,1:60:99:0,108,1486 0/1:43,6:49:46:46,0,889 +chr5 126847625 . A C 61.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.405;DP=93;Dels=0.04;FS=15.937;HaplotypeScore=4.4291;MLEAC=3;MLEAF=0.375;MQ=15.55;MQ0=0;MQRankSum=1.130;QD=1.32;ReadPosRankSum=2.907;SB=2.47 GT:AD:DP:GQ:PL 0/0:24,1:25:9:0,9,103 1/1:20,3:23:3:28,3,0 0/0:16,2:18:3:0,3,25 0/1:19,4:23:47:75,0,47 +chr5 126860580 . T G 48.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.571;DP=127;Dels=0.03;FS=45.306;HaplotypeScore=15.4233;MLEAC=2;MLEAF=0.250;MQ=25.35;MQ0=0;MQRankSum=-1.870;QD=0.92;ReadPosRankSum=0.755;SB=-3.304e+00 GT:AD:DP:GQ:PL 0/1:28,4:32:36:36,0,459 0/0:39,3:43:10:0,10,516 0/0:26,2:28:15:0,15,367 0/1:15,4:20:52:54,0,52 +chr5 127645713 . G T 553.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.897;DP=174;Dels=0.01;FS=105.766;HaplotypeScore=5.2218;MLEAC=4;MLEAF=0.500;MQ=35.45;MQ0=0;MQRankSum=-3.701;QD=3.18;ReadPosRankSum=1.213;SB=-1.187e-02 GT:AD:DP:GQ:PL 0/1:34,9:43:99:197,0,756 0/1:36,5:41:49:49,0,1112 0/1:43,7:50:59:59,0,1317 0/1:27,12:39:99:291,0,702 +chr5 128994340 . C T 417.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.906;DP=146;Dels=0.03;FS=93.064;HaplotypeScore=20.9959;MLEAC=4;MLEAF=0.500;MQ=29.73;MQ0=0;MQRankSum=-4.565;QD=2.86;ReadPosRankSum=4.717;SB=-1.254e+00 GT:AD:DP:GQ:PL 0/1:28,7:35:99:102,0,316 0/1:36,12:48:99:254,0,495 0/1:40,5:46:59:59,0,542 0/1:10,3:13:45:45,0,214 +chr5 129477414 rs141239610 CAG C 344.63 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.965;DB;DP=34;FS=0.000;HaplotypeScore=1.8750;MLEAC=6;MLEAF=0.750;MQ=20.40;MQ0=0;MQRankSum=1.892;QD=10.77;ReadPosRankSum=0.865;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:0,5:4:12:210,12,0 0/1:11,4:7:84:84,0,237 1/1:6,5:2:6:105,6,0 0/0:2,0:1:3:0,3,52 +chr5 129520259 . A T 33.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.304;DP=125;Dels=0.02;FS=20.316;HaplotypeScore=9.9213;MLEAC=2;MLEAF=0.250;MQ=32.40;MQ0=0;MQRankSum=-1.144;QD=0.53;ReadPosRankSum=0.763;SB=0.084 GT:AD:DP:GQ:PL 0/0:35,1:37:52:0,52,875 0/1:28,3:32:34:34,0,533 0/1:28,3:31:41:41,0,481 0/0:21,2:23:11:0,11,376 +chr5 130344258 . A C 41.80 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.151;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7079;MLEAC=1;MLEAF=0.125;MQ=31.58;MQ0=0;MQRankSum=-0.754;QD=3.80;ReadPosRankSum=-0.251;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:9:0,9,122 0/0:6,0:6:6:0,6,78 0/0:7,0:7:6:0,6,81 0/1:8,3:11:77:77,0,131 +chr5 130721287 . G A 76.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.359;DP=108;Dels=0.00;FS=17.228;HaplotypeScore=1.5545;MLEAC=3;MLEAF=0.375;MQ=39.29;MQ0=0;MQRankSum=-0.457;QD=1.14;ReadPosRankSum=0.196;SB=-1.686e+00 GT:AD:DP:GQ:PL 0/1:21,4:25:65:65,0,641 0/1:31,2:33:5:5,0,674 0/0:41,0:41:72:0,72,980 0/1:7,2:9:48:48,0,166 +chr5 130767121 rs6596022 T C 425.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.075;DB;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.2479;MLEAC=3;MLEAF=0.375;MQ=39.33;MQ0=0;MQRankSum=-1.030;QD=8.52;ReadPosRankSum=1.978;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:60:0,60,777 0/1:11,5:16:99:157,0,407 0/1:17,8:25:99:251,0,582 0/1:7,2:9:61:61,0,180 +chr5 131649567 . A G 100.05 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.498;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.6275;MLEAC=2;MLEAF=0.250;MQ=28.79;MQ0=0;MQRankSum=-0.009;QD=2.27;ReadPosRankSum=0.407;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,4:24:63:63,0,540 0/1:16,4:20:78:78,0,289 0/0:14,1:15:13:0,13,285 0/0:15,1:16:9:0,9,321 +chr5 131796067 rs2706393 G A 69.99 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.754;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.4916;MLEAC=2;MLEAF=0.500;MQ=24.37;MQ0=0;MQRankSum=1.300;QD=23.33;ReadPosRankSum=-0.550;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:9:107,9,0 0/0:4,0:4:6:0,6,60 ./. ./. +chr5 131819970 rs7701588 T C 476.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.004;DB;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=3.6331;MLEAC=4;MLEAF=0.500;MQ=34.79;MQ0=0;MQRankSum=-2.704;QD=11.09;ReadPosRankSum=2.567;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:48:0,48,628 1/1:1,8:9:21:227,21,0 0/1:13,5:18:99:140,0,382 0/1:9,5:14:99:158,0,246 +chr5 131944789 . T A 211.15 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.410;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=17.8281;MLEAC=5;MLEAF=0.625;MQ=22.56;MQ0=0;MQRankSum=-0.340;QD=4.14;ReadPosRankSum=0.990;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:10,5:15:3:32,3,0 0/1:8,5:13:8:99,0,8 0/1:8,4:12:32:73,0,32 0/1:8,2:10:14:49,0,14 +chr5 132046590 rs7737031 C T 217.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.932;DB;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=2.3026;MLEAC=1;MLEAF=0.125;MQ=33.96;MQ0=0;MQRankSum=-0.686;QD=8.07;ReadPosRankSum=0.033;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,9:27:99:254,0,530 0/0:56,1:57:99:0,153,1845 0/0:54,0:54:99:0,159,1949 0/0:16,0:16:45:0,45,583 +chr5 132424046 rs11749966 T C 121.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.398;DB;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=33.30;MQ0=0;MQRankSum=-1.661;QD=10.10;ReadPosRankSum=-1.069;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:36:0,36,414 0/1:5,7:12:99:157,0,141 0/0:16,0:16:48:0,48,591 0/0:3,0:3:9:0,9,108 +chr5 132433049 rs55643445 G T 659.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=4.439;DB;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=1.8645;MLEAC=1;MLEAF=0.125;MQ=37.96;MQ0=0;MQRankSum=-3.104;QD=9.43;ReadPosRankSum=2.532;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:97,0:97:99:0,271,3585 0/1:45,25:70:99:696,0,1438 0/0:97,0:97:99:0,289,3853 0/0:28,0:28:84:0,84,1128 +chr5 133477951 rs34995273 G A 156.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.958;DB;DP=129;Dels=0.00;FS=1.591;HaplotypeScore=4.2055;MLEAC=1;MLEAF=0.125;MQ=26.38;MQ0=0;MQRankSum=0.005;QD=4.36;ReadPosRankSum=-0.971;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/0:24,0:24:60:0,60,635 0/1:26,10:36:99:193,0,166 0/0:42,0:42:96:0,96,1043 0/0:27,0:27:45:0,45,475 +chr5 133745694 . C A 42.31 . AC=2;AF=0.333;AN=6;BaseQRankSum=-2.141;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.1037;MLEAC=2;MLEAF=0.333;MQ=21.83;MQ0=0;MQRankSum=1.668;QD=0.77;ReadPosRankSum=0.512;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,3:28:21:21,0,201 0/1:24,3:27:30:59,0,30 0/0:26,1:27:6:0,6,53 ./. +chr5 133873577 rs2304082 C T 710.57 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.093;DB;DP=63;Dels=0.00;FS=5.419;HaplotypeScore=1.9900;MLEAC=4;MLEAF=0.500;MQ=38.21;MQ0=0;MQRankSum=-3.687;QD=15.12;ReadPosRankSum=0.831;SB=-1.073e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:39:0,39,534 1/1:1,11:12:33:428,33,0 0/1:9,2:11:37:37,0,352 0/1:14,10:24:99:294,0,508 +chr5 134077274 . A G 216.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.830;DP=52;Dels=0.02;FS=2.596;HaplotypeScore=7.7930;MLEAC=3;MLEAF=0.375;MQ=26.37;MQ0=0;MQRankSum=0.809;QD=4.62;ReadPosRankSum=2.223;SB=19.88 GT:AD:DP:GQ:PL 0/1:11,5:16:99:138,0,123 0/1:11,3:15:64:64,0,137 0/1:10,5:15:56:56,0,178 0/0:4,0:5:3:0,3,22 +chr5 134190750 . C T 45.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.576;DP=243;Dels=0.03;FS=31.083;HaplotypeScore=36.3561;MLEAC=2;MLEAF=0.250;MQ=29.15;MQ0=0;MQRankSum=-1.924;QD=0.38;ReadPosRankSum=2.417;SB=-1.293e+00 GT:AD:DP:GQ:PL 0/0:63,2:65:60:0,60,1257 0/1:57,6:63:9:9,0,859 0/0:54,3:57:43:0,43,873 0/1:45,6:51:76:76,0,566 +chr5 134235119 . A T 34.38 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.206;DP=78;Dels=0.01;FS=8.893;HaplotypeScore=4.9649;MLEAC=1;MLEAF=0.125;MQ=32.19;MQ0=0;MQRankSum=-2.445;QD=1.27;ReadPosRankSum=2.445;SB=-1.359e-02 GT:AD:DP:GQ:PL 0/0:20,0:21:12:0,12,145 0/1:23,3:27:70:70,0,135 0/0:18,1:20:33:0,33,436 0/0:9,0:9:6:0,6,46 +chr5 135215703 . T C 258.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.670;DP=124;Dels=0.00;FS=65.137;HaplotypeScore=9.4494;MLEAC=4;MLEAF=0.500;MQ=32.70;MQ0=0;MQRankSum=0.021;QD=2.09;ReadPosRankSum=2.312;SB=-1.193e-02 GT:AD:DP:GQ:PL 0/1:28,5:33:71:71,0,698 0/1:25,4:30:74:74,0,572 0/1:21,5:28:99:111,0,563 0/1:29,4:33:45:45,0,647 +chr5 135396468 rs13188659 T A 183.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.096;DB;DP=88;Dels=0.03;FS=0.000;HaplotypeScore=0.9589;MLEAC=3;MLEAF=0.375;MQ=25.18;MQ0=0;MQRankSum=-1.930;QD=5.55;ReadPosRankSum=-0.478;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,9:14:21:222,21,0 0/0:31,0:31:69:0,69,820 0/0:19,5:24:11:0,11,356 0/1:14,2:16:9:9,0,158 +chr5 137426499 . C G 78.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.942;DP=164;Dels=0.00;FS=25.112;HaplotypeScore=2.7666;MLEAC=1;MLEAF=0.125;MQ=37.21;MQ0=0;MQRankSum=0.727;QD=2.32;ReadPosRankSum=-0.609;SB=0.184 GT:AD:DP:GQ:PL 0/0:40,1:41:74:0,74,1443 0/0:41,0:41:99:0,99,1197 0/0:47,1:48:86:0,86,1437 0/1:27,7:34:99:115,0,706 +chr5 137506434 rs13155519 G A 59.06 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.298;DB;DP=26;Dels=0.00;FS=2.567;HaplotypeScore=1.3318;MLEAC=2;MLEAF=0.250;MQ=27.24;MQ0=0;MQRankSum=-0.383;QD=7.38;ReadPosRankSum=0.043;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,4:8:9:101,9,0 0/0:4,0:4:9:0,9,116 0/0:12,0:12:24:0,24,299 0/0:2,0:2:3:0,3,30 +chr5 137664108 . G C 34.35 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.749;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1571;MLEAC=2;MLEAF=0.250;MQ=33.90;MQ0=0;MQRankSum=-3.016;QD=0.41;ReadPosRankSum=1.377;SB=-5.727e-01 GT:AD:DP:GQ:PL 0/1:36,5:41:62:62,0,785 0/0:32,4:37:4:0,4,841 0/1:39,3:42:12:12,0,703 0/0:16,0:16:30:0,30,384 +chr5 137802861 . T G 129.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.941;DP=144;Dels=0.00;FS=16.590;HaplotypeScore=4.5637;MLEAC=3;MLEAF=0.375;MQ=32.39;MQ0=0;MQRankSum=-3.145;QD=1.23;ReadPosRankSum=0.192;SB=-1.121e+00 GT:AD:DP:GQ:PL 0/1:35,3:38:6:6,0,774 0/1:36,5:41:46:46,0,793 0/0:37,2:39:23:0,23,845 0/1:20,6:26:99:119,0,405 +chr5 137844274 rs2242599 A G 323.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.000;DB;DP=103;Dels=0.04;FS=2.779;HaplotypeScore=3.5586;MLEAC=4;MLEAF=0.500;MQ=23.45;MQ0=0;MQRankSum=2.420;QD=3.14;ReadPosRankSum=0.239;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:23,4:27:80:80,0,218 0/1:22,6:28:52:52,0,439 0/1:18,9:27:99:208,0,182 0/1:15,2:17:26:26,0,134 +chr5 138253486 . A G 171.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.039;DP=378;Dels=0.01;FS=62.231;HaplotypeScore=30.1801;MLEAC=2;MLEAF=0.250;MQ=26.65;MQ0=0;MQRankSum=1.105;QD=0.78;ReadPosRankSum=1.333;SB=0.399 GT:AD:DP:GQ:PL 0/1:86,4:91:31:31,0,808 0/1:114,12:128:99:182,0,994 0/0:114,6:121:39:0,39,1346 0/0:34,1:35:18:0,18,197 +chr5 138723673 . C T 60.09 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.469;DP=60;Dels=0.00;FS=2.506;HaplotypeScore=2.1332;MLEAC=1;MLEAF=0.125;MQ=26.42;MQ0=0;MQRankSum=1.245;QD=4.29;ReadPosRankSum=-0.225;SB=0.285 GT:AD:DP:GQ:PL 0/0:10,0:10:12:0,12,130 0/0:17,1:18:18:0,18,169 0/1:10,3:14:96:96,0,135 0/0:18,0:18:24:0,24,228 +chr5 138732579 rs10900862 C T 1215.85 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.760;DB;DP=64;Dels=0.00;FS=1.463;HaplotypeScore=5.0391;MLEAC=7;MLEAF=0.875;MQ=32.03;MQ0=0;MQRankSum=-0.489;QD=19.00;ReadPosRankSum=1.137;SB=-1.277e+02 GT:AD:DP:GQ:PL 1/1:3,16:19:10:425,10,0 0/1:16,3:19:24:24,0,417 1/1:0,16:16:48:591,48,0 1/1:3,7:10:21:220,21,0 +chr5 138775124 . G A 46.23 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.125;DP=53;Dels=0.00;FS=8.078;HaplotypeScore=11.7432;MLEAC=4;MLEAF=0.500;MQ=27.12;MQ0=0;MQRankSum=0.609;QD=0.87;ReadPosRankSum=-0.129;SB=-2.783e+00 GT:AD:DP:GQ:PL 0/1:6,1:7:16:16,0,94 0/1:13,1:14:23:23,0,153 0/1:17,1:18:3:3,0,276 0/1:11,3:14:31:45,0,31 +chr5 139215386 rs62383878 A C 1341.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.926;DB;DP=202;Dels=0.00;FS=3.771;HaplotypeScore=0.7415;MLEAC=2;MLEAF=0.250;MQ=35.62;MQ0=0;MQRankSum=-2.829;QD=13.83;ReadPosRankSum=1.794;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:24,25:49:99:725,0,734 0/1:25,23:48:99:658,0,773 0/0:52,0:52:99:0,156,2038 0/0:53,0:53:99:0,150,1924 +chr5 139239569 . G A 219.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.415;DP=76;Dels=0.00;FS=2.499;HaplotypeScore=1.5303;MLEAC=4;MLEAF=0.500;MQ=25.26;MQ0=0;MQRankSum=-0.319;QD=2.89;ReadPosRankSum=2.444;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:57:57,0,173 0/1:14,3:17:35:35,0,192 0/1:13,5:18:99:103,0,125 0/1:18,3:21:67:67,0,173 +chr5 139251460 . C G 31 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.279;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4821;MLEAC=1;MLEAF=0.125;MQ=40.38;MQ0=0;MQRankSum=-2.307;QD=1.63;ReadPosRankSum=0.014;SB=-9.977e-03 GT:AD:DP:GQ:PL 0/0:19,0:19:39:0,39,545 0/1:15,4:19:67:67,0,484 0/0:19,0:19:39:0,39,546 0/0:18,0:18:48:0,48,620 +chr5 139747071 . G A 61.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.641;DP=67;Dels=0.00;FS=10.232;HaplotypeScore=2.9422;MLEAC=3;MLEAF=0.375;MQ=28.27;MQ0=0;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.285;SB=-1.593e+01 GT:AD:DP:GQ:PL 0/0:7,0:7:12:0,12,141 0/1:12,3:15:43:43,0,178 0/1:24,2:26:14:14,0,232 0/1:16,2:19:47:47,0,110 +chr5 139892352 . C T 246.34 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.810;DP=82;Dels=0.05;FS=3.153;HaplotypeScore=11.1660;MLEAC=5;MLEAF=0.625;MQ=18.65;MQ0=0;MQRankSum=0.317;QD=3.00;ReadPosRankSum=4.134;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,11:23:72:108,0,72 0/1:15,9:25:82:82,0,95 0/1:17,7:24:52:52,0,108 1/1:1,5:6:6:48,6,0 +chr5 139908328 . T C 102.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.366;DP=194;Dels=0.00;FS=70.497;HaplotypeScore=2.8074;MLEAC=3;MLEAF=0.375;MQ=35.65;MQ0=0;MQRankSum=-2.034;QD=0.71;ReadPosRankSum=4.311;SB=-1.159e+00 GT:AD:DP:GQ:PL 0/1:54,6:60:29:29,0,1622 0/1:35,3:38:7:7,0,979 0/0:49,0:49:99:0,123,1555 0/1:40,7:47:99:109,0,1101 +chr5 140176325 . G C 116.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.547;DP=109;Dels=0.02;FS=43.299;HaplotypeScore=3.2783;MLEAC=4;MLEAF=0.500;MQ=18.23;MQ0=0;MQRankSum=3.523;QD=1.07;ReadPosRankSum=-1.061;SB=-1.317e+00 GT:AD:DP:GQ:PL 0/1:18,3:21:15:63,0,15 0/1:31,3:34:52:52,0,159 0/1:25,1:26:14:14,0,143 0/1:23,3:26:30:30,0,133 +chr5 140182834 . T G 66.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.277;DP=102;Dels=0.00;FS=83.573;HaplotypeScore=13.1959;MLEAC=2;MLEAF=0.250;MQ=22.41;MQ0=0;MQRankSum=-0.179;QD=1.13;ReadPosRankSum=0.129;SB=1.37 GT:AD:DP:GQ:PL 0/0:13,1:15:21:0,21,213 0/1:25,6:33:83:83,0,305 0/0:25,3:28:16:0,16,409 0/1:21,4:26:25:25,0,212 +chr5 140213928 . G A 44.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.186;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.5732;MLEAC=2;MLEAF=0.250;MQ=31.89;MQ0=0;MQRankSum=-2.588;QD=0.77;ReadPosRankSum=3.797;SB=0.098 GT:AD:DP:GQ:PL 0/1:28,3:31:30:30,0,403 0/0:29,2:31:14:0,14,656 0/0:32,1:33:50:0,50,831 0/1:23,4:27:56:56,0,485 +chr5 140248539 rs192231 C T 1132.94 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.654;DB;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.7402;MLEAC=7;MLEAF=0.875;MQ=36.73;MQ0=0;MQRankSum=-1.912;QD=24.11;ReadPosRankSum=0.500;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:30:386,30,0 0/1:10,6:16:99:179,0,371 1/1:3,14:17:18:499,18,0 1/1:0,3:3:9:113,9,0 +chr5 140250816 . C G 58.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.550;DP=116;Dels=0.00;FS=24.185;HaplotypeScore=3.4716;MLEAC=2;MLEAF=0.250;MQ=27.91;MQ0=0;MQRankSum=-0.542;QD=0.91;ReadPosRankSum=2.059;SB=-2.441e+00 GT:AD:DP:GQ:PL 0/0:19,2:21:3:0,3,265 0/0:28,3:31:4:0,4,342 0/1:32,5:37:28:28,0,359 0/1:23,4:27:69:69,0,389 +chr5 140255792 rs251377 C A 7950.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.896;DB;DP=286;Dels=0.00;FS=12.209;HaplotypeScore=1.3954;MLEAC=7;MLEAF=0.875;MQ=35.91;MQ0=0;MQRankSum=-5.324;QD=27.80;ReadPosRankSum=2.680;SB=-3.756e+03 GT:AD:DP:GQ:PL 1/1:6,70:76:99:2664,172,0 0/1:55,22:77:99:617,0,1884 1/1:5,80:85:99:2945,172,0 1/1:1,47:48:99:1724,113,0 +chr5 140263345 . C A 79.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.653;DP=115;Dels=0.00;FS=35.823;HaplotypeScore=11.3614;MLEAC=4;MLEAF=0.500;MQ=15.16;MQ0=0;MQRankSum=3.269;QD=0.69;ReadPosRankSum=-2.340;SB=-5.590e-01 GT:AD:DP:GQ:PL 0/1:24,2:26:36:36,0,82 0/1:21,3:24:11:11,0,73 0/1:40,2:42:10:10,0,184 0/1:20,3:23:64:64,0,102 +chr5 140431608 . T G 41 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.276;DP=170;Dels=0.01;FS=20.079;HaplotypeScore=4.9043;MLEAC=1;MLEAF=0.125;MQ=37.12;MQ0=0;MQRankSum=-1.889;QD=0.91;ReadPosRankSum=0.105;SB=-3.136e+00 GT:AD:DP:GQ:PL 0/0:39,1:40:64:0,64,1186 0/0:36,2:39:44:0,44,992 0/0:41,4:45:23:0,23,1103 0/1:39,6:45:77:77,0,996 +chr5 140480355 rs31849 A G 1175.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.892;DB;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=4.1518;MLEAC=3;MLEAF=0.375;MQ=34.65;MQ0=0;MQRankSum=-1.855;QD=9.64;ReadPosRankSum=1.092;SB=-4.640e+02 GT:AD:DP:GQ:PL 0/1:23,14:37:99:421,0,713 0/0:50,0:50:99:0,138,1666 0/1:27,17:44:99:442,0,762 0/1:24,15:39:99:356,0,597 +chr5 140514997 . T A 150.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.266;DP=125;Dels=0.01;FS=6.803;HaplotypeScore=3.1208;MLEAC=3;MLEAF=0.375;MQ=37.38;MQ0=0;MQRankSum=2.429;QD=1.71;ReadPosRankSum=-0.979;SB=0.891 GT:AD:DP:GQ:PL 0/1:25,5:30:96:96,0,623 0/0:34,2:36:23:0,23,944 0/1:27,4:31:68:68,0,594 0/1:25,2:27:30:30,0,339 +chr5 140516711 . GA G 156.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.780;DP=85;FS=17.732;HaplotypeScore=63.8712;MLEAC=4;MLEAF=0.500;MQ=22.25;MQ0=0;MQRankSum=-1.221;QD=1.84;RPA=2,1;RU=A;ReadPosRankSum=0.250;SB=-1.958e-03;STR GT:AD:DP:GQ:PL 0/1:17,4:16:39:39,0,301 0/1:21,3:17:63:63,0,223 0/1:15,2:15:51:51,0,333 0/1:16,2:12:55:55,0,116 +chr5 140553094 . C A 141.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.746;DP=216;Dels=0.00;FS=96.820;HaplotypeScore=16.7951;MLEAC=3;MLEAF=0.375;MQ=35.17;MQ0=0;MQRankSum=-2.168;QD=0.89;ReadPosRankSum=1.625;SB=0.776 GT:AD:DP:GQ:PL 0/0:54,2:56:31:0,31,948 0/1:47,5:53:46:46,0,877 0/1:54,7:61:68:68,0,1050 0/1:40,5:46:71:71,0,732 +chr5 140567541 . G T 484.99 . AC=7;AF=0.875;AN=8;BaseQRankSum=-4.166;DP=147;Dels=0.02;FS=4.931;HaplotypeScore=4.4954;MLEAC=6;MLEAF=0.750;MQ=15.93;MQ0=0;MQRankSum=6.175;QD=3.30;ReadPosRankSum=1.312;SB=7.98 GT:AD:DP:GQ:PL 0/1:29,6:36:20:78,0,20 1/1:28,8:36:21:219,21,0 1/1:32,1:33:3:23,3,0 1/1:29,9:39:21:208,21,0 +chr5 140590071 . T C 41.27 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.024;DP=92;Dels=0.01;FS=29.971;HaplotypeScore=11.6853;MLEAC=4;MLEAF=0.500;MQ=11.47;MQ0=0;MQRankSum=2.138;QD=0.88;ReadPosRankSum=3.867;SB=5.75 GT:AD:DP:GQ:PL 1/1:12,6:18:6:48,6,0 0/0:15,3:18:3:0,3,30 0/0:23,3:26:3:0,3,32 0/1:20,8:29:35:35,0,44 +chr5 140621108 . A C 56.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.607;DP=47;Dels=0.04;FS=0.000;HaplotypeScore=1.7046;MLEAC=4;MLEAF=0.500;MQ=10.40;MQ0=0;MQRankSum=0.658;QD=1.94;ReadPosRankSum=-1.607;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,2:7:3:0,3,28 0/0:10,0:10:3:0,3,22 0/1:13,4:17:20:46,0,20 1/1:8,3:11:6:52,6,0 +chr5 140626368 . G C 104.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.602;DP=121;Dels=0.00;FS=25.209;HaplotypeScore=4.2713;MLEAC=3;MLEAF=0.375;MQ=24.54;MQ0=0;MQRankSum=1.985;QD=1.15;ReadPosRankSum=0.131;SB=1.30 GT:AD:DP:GQ:PL 0/1:30,2:33:34:34,0,213 0/1:33,3:37:38:38,0,334 0/0:29,1:30:10:0,10,334 0/1:18,3:21:75:75,0,121 +chr5 140626726 . T G 48.09 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.924;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3430;MLEAC=3;MLEAF=0.750;MQ=7.78;MQ0=0;MQRankSum=2.714;QD=1.09;ReadPosRankSum=-0.237;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:18,2:20:6:60,6,0 ./. 0/1:23,1:24:18:24,0,18 ./. +chr5 140724638 . A C 1368.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.561;DP=365;Dels=0.00;FS=210.356;HaplotypeScore=9.0702;MLEAC=4;MLEAF=0.500;MQ=34.37;MQ0=0;MQRankSum=-2.386;QD=3.75;ReadPosRankSum=2.519;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:84,18:102:99:313,0,2076 0/1:74,19:93:99:396,0,1713 0/1:88,25:113:99:475,0,2100 0/1:46,10:57:99:227,0,1140 +chr5 140772392 . A G 191.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.392;DP=122;Dels=0.00;FS=126.833;HaplotypeScore=6.3667;MLEAC=4;MLEAF=0.500;MQ=34.28;MQ0=0;MQRankSum=-4.285;QD=1.57;ReadPosRankSum=0.780;SB=-1.792e-02 GT:AD:DP:GQ:PL 0/1:28,6:34:90:90,0,742 0/1:25,6:31:79:79,0,680 0/1:27,6:33:39:39,0,648 0/1:19,5:24:26:26,0,502 +chr5 140792940 . C G 44.70 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.168;DP=208;Dels=0.01;FS=38.597;HaplotypeScore=11.8537;MLEAC=2;MLEAF=0.250;MQ=16.03;MQ0=0;MQRankSum=2.157;QD=0.41;ReadPosRankSum=-1.500;SB=0.066 GT:AD:DP:GQ:PL 0/0:43,0:43:21:0,21,199 0/1:50,4:54:65:65,0,84 0/1:50,3:53:21:21,0,268 0/0:52,2:55:24:0,24,254 +chr5 140890454 . G T 52.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.487;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.1642;MLEAC=1;MLEAF=0.125;MQ=32.83;MQ0=0;MQRankSum=-0.168;QD=1.36;ReadPosRankSum=-1.774;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:35,2:37:41:0,41,1126 0/0:41,2:43:36:0,36,1086 0/0:36,0:36:84:0,84,991 0/1:34,5:39:89:89,0,834 +chr5 141023873 . A G 34.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.889;DP=85;Dels=0.00;FS=63.711;HaplotypeScore=2.1503;MLEAC=2;MLEAF=0.250;MQ=31.40;MQ0=0;MQRankSum=-3.156;QD=0.69;ReadPosRankSum=1.878;SB=3.14 GT:AD:DP:GQ:PL 0/0:18,0:18:36:0,36,467 0/0:17,0:17:42:0,42,512 0/1:22,7:29:53:53,0,485 0/1:18,3:21:23:23,0,470 +chr5 141049235 . G A 35.11 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.732;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=1.3318;MLEAC=1;MLEAF=0.125;MQ=31.66;MQ0=0;MQRankSum=-2.384;QD=1.13;ReadPosRankSum=-1.362;SB=-7.775e-03 GT:AD:DP:GQ:PL 0/0:27,1:28:15:0,15,416 0/0:30,1:31:12:0,12,421 0/0:37,1:38:25:0,25,637 0/1:27,4:31:71:71,0,290 +chr5 141331194 . C T 70.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.457;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=4.6624;MLEAC=3;MLEAF=0.375;MQ=37.99;MQ0=0;MQRankSum=-2.624;QD=1.16;ReadPosRankSum=-0.615;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,1:21:15:0,15,688 0/1:19,2:21:29:29,0,405 0/1:21,3:24:60:60,0,641 0/1:12,3:15:25:25,0,293 +chr5 141336264 rs164075 G T 1210.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.128;DB;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=3.3315;MLEAC=3;MLEAF=0.375;MQ=36.49;MQ0=0;MQRankSum=-0.899;QD=9.39;ReadPosRankSum=1.504;SB=-4.940e+02 GT:AD:DP:GQ:PL 0/1:26,14:40:99:461,0,627 0/0:50,0:50:99:0,138,1787 0/1:34,15:49:99:375,0,932 0/1:24,14:38:99:418,0,603 +chr5 141381603 . G A 163.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.601;DP=75;Dels=0.00;FS=16.964;HaplotypeScore=0.9152;MLEAC=4;MLEAF=0.500;MQ=35.58;MQ0=0;MQRankSum=1.613;QD=2.18;ReadPosRankSum=-0.706;SB=-8.090e-01 GT:AD:DP:GQ:PL 0/1:14,1:15:6:6,0,344 0/1:18,3:22:77:77,0,217 0/1:25,2:28:32:32,0,464 0/1:7,3:10:90:90,0,135 +chr5 142595680 . G T 37.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.328;DP=78;Dels=0.01;FS=4.927;HaplotypeScore=9.5755;MLEAC=2;MLEAF=0.250;MQ=29.98;MQ0=0;MQRankSum=-0.431;QD=1.40;ReadPosRankSum=0.190;SB=-1.672e+00 GT:AD:DP:GQ:PL 0/1:15,1:16:7:7,0,195 0/0:18,1:19:15:0,15,142 0/0:30,0:31:30:0,30,352 0/1:8,3:11:70:70,0,96 +chr5 143543677 . G A 51.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.031;DP=83;Dels=0.00;FS=7.809;HaplotypeScore=0.8581;MLEAC=2;MLEAF=0.250;MQ=34.03;MQ0=0;MQRankSum=-1.235;QD=1.40;ReadPosRankSum=-0.510;SB=0.942 GT:AD:DP:GQ:PL 0/1:21,4:25:65:65,0,438 0/0:20,1:21:16:0,16,408 0/0:25,0:25:48:0,48,577 0/1:10,1:12:28:28,0,89 +chr5 145198805 rs624380 T C 400.58 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.362;DB;DP=25;Dels=0.04;FS=6.690;HaplotypeScore=2.0982;MLEAC=4;MLEAF=0.667;MQ=30.82;MQ0=0;MQRankSum=0.206;QD=23.56;ReadPosRankSum=-0.041;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:12:0,12,172 1/1:4,6:10:18:241,18,0 1/1:2,5:7:15:206,15,0 ./. +chr5 145379913 . G C 174.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.463;DP=37;Dels=0.03;FS=5.528;HaplotypeScore=9.7754;MLEAC=3;MLEAF=0.375;MQ=26.38;MQ0=0;MQRankSum=1.104;QD=5.64;ReadPosRankSum=0.311;SB=-3.289e+00 GT:AD:DP:GQ:PL 0/1:6,3:9:61:86,0,61 0/0:5,1:6:6:0,6,47 0/1:9,2:11:56:56,0,63 0/1:7,3:10:19:75,0,19 +chr5 145435720 . G T 51.71 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.383;DP=202;Dels=0.00;FS=163.539;HaplotypeScore=2.1748;MLEAC=1;MLEAF=0.125;MQ=37.21;MQ0=0;MQRankSum=-5.657;QD=1.10;ReadPosRankSum=-0.382;SB=-7.094e+00 GT:AD:DP:GQ:PL 0/0:50,6:56:2:0,2,1570 0/1:40,7:47:87:87,0,1385 0/0:54,3:57:96:0,96,1802 0/0:38,3:42:70:0,70,1155 +chr5 145483962 . A G 46.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.644;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8856;MLEAC=2;MLEAF=0.250;MQ=28.15;MQ0=0;MQRankSum=-2.411;QD=1.28;ReadPosRankSum=1.388;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:32:32,0,109 0/1:13,5:19:54:54,0,263 0/0:14,2:16:3:0,3,238 0/0:4,0:4:9:0,9,96 +chr5 145515346 rs12153109 C T 58.78 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.457;DB;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=34.43;MQ0=0;MQRankSum=-2.285;QD=4.90;ReadPosRankSum=0.065;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:49:49,0,111 0/0:3,0:3:9:0,9,121 0/1:5,2:7:48:48,0,140 ./. +chr5 145643145 . A G 42.57 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.398;DP=161;Dels=0.02;FS=4.950;HaplotypeScore=34.1511;MLEAC=1;MLEAF=0.125;MQ=28.29;MQ0=0;MQRankSum=-2.211;QD=2.37;ReadPosRankSum=0.888;SB=-2.008e+01 GT:AD:DP:GQ:PL 0/0:48,1:51:42:0,42,799 0/0:41,1:44:40:0,40,715 0/0:41,4:46:3:0,3,677 0/1:12,4:17:78:78,0,148 +chr5 145719251 rs137955775 C A 184.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.709;DB;DP=133;Dels=0.01;FS=58.852;HaplotypeScore=12.3225;MLEAC=4;MLEAF=0.500;MQ=34.26;MQ0=0;MQRankSum=-3.702;QD=1.39;ReadPosRankSum=0.222;SB=-8.102e-01 GT:AD:DP:GQ:PL 0/1:23,2:25:6:6,0,425 0/1:32,7:39:37:37,0,832 0/1:35,4:39:37:37,0,787 0/1:22,7:29:99:146,0,460 +chr5 145834806 . G A 114.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.541;DP=171;Dels=0.00;FS=153.450;HaplotypeScore=5.3462;MLEAC=3;MLEAF=0.375;MQ=37.17;MQ0=0;MQRankSum=-5.391;QD=0.96;ReadPosRankSum=1.416;SB=0.781 GT:AD:DP:GQ:PL 0/1:33,5:38:40:40,0,959 0/1:33,5:38:65:65,0,846 0/0:46,5:52:45:0,45,1471 0/1:37,6:43:53:53,0,1146 +chr5 146086904 . T C 108.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.072;DP=204;Dels=0.00;FS=8.803;HaplotypeScore=3.8499;MLEAC=4;MLEAF=0.500;MQ=13.01;MQ0=0;MQRankSum=5.631;QD=0.53;ReadPosRankSum=-0.125;SB=0.016 GT:AD:DP:GQ:PL 0/1:42,5:47:62:62,0,79 0/1:53,4:57:20:20,0,22 0/1:50,3:54:20:20,0,70 0/1:41,4:45:49:49,0,77 +chr5 146429710 rs1031916 C T 44.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=21.94;MQ0=0;MQRankSum=0.736;QD=14.67;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:38,3,0 ./. 1/1:1,1:2:3:39,3,0 ./. +chr5 147016592 . G T 158.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.690;DP=228;Dels=0.00;FS=15.389;HaplotypeScore=6.2942;MLEAC=4;MLEAF=0.500;MQ=31.81;MQ0=0;MQRankSum=-3.871;QD=0.70;ReadPosRankSum=1.670;SB=-6.293e-02 GT:AD:DP:GQ:PL 0/1:53,6:59:19:19,0,1293 0/1:56,5:61:28:28,0,1333 0/1:53,6:59:44:44,0,1188 0/1:39,9:48:99:110,0,946 +chr5 147480007 rs2303062 A G 342.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.288;DB;DP=191;Dels=0.00;FS=1.157;HaplotypeScore=0.7483;MLEAC=2;MLEAF=0.250;MQ=36.46;MQ0=0;MQRankSum=-2.664;QD=4.03;ReadPosRankSum=0.687;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:39,7:46:99:148,0,1277 0/1:29,10:39:99:236,0,868 0/0:67,0:67:99:0,174,2252 0/0:39,0:39:99:0,102,1305 +chr5 147593497 rs12186491 C A 6859.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.634;DB;DP=200;Dels=0.00;FS=4.185;HaplotypeScore=1.7378;MLEAC=8;MLEAF=1.00;MQ=37.75;MQ0=0;MQRankSum=3.243;QD=34.30;ReadPosRankSum=3.716;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:7,38:45:34:1385,34,0 1/1:4,50:55:99:1861,123,0 1/1:2,56:58:98:2139,98,0 1/1:4,38:42:82:1474,82,0 +chr5 147795717 . T G 124.36 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.194;DP=47;Dels=0.00;FS=2.793;HaplotypeScore=8.9748;MLEAC=4;MLEAF=0.500;MQ=24.97;MQ0=0;MQRankSum=0.290;QD=4.44;ReadPosRankSum=-0.097;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:7,4:11:9:92,9,0 0/0:17,1:19:15:0,15,148 0/1:9,2:11:54:54,0,66 0/1:5,1:6:18:25,0,18 +chr5 147813123 . C T 131.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.192;DP=272;Dels=0.00;FS=76.371;HaplotypeScore=9.9504;MLEAC=2;MLEAF=0.250;MQ=34.50;MQ0=0;MQRankSum=-5.528;QD=1.12;ReadPosRankSum=3.039;SB=-1.075e+00 GT:AD:DP:GQ:PL 0/0:67,6:73:17:0,17,1782 0/1:70,7:77:33:33,0,1649 0/0:74,7:81:20:0,20,1908 0/1:30,10:41:99:140,0,522 +chr5 147819177 . G A,C 43.69 . AC=3,2;AF=0.375,0.250;AN=8;BaseQRankSum=1.897;DP=63;Dels=0.05;FS=0.000;HaplotypeScore=19.3273;MLEAC=2,2;MLEAF=0.250,0.250;MQ=18.03;MQ0=0;MQRankSum=0.792;QD=0.69;ReadPosRankSum=0.461;SB=1.99 GT:AD:DP:GQ:PL 0/2:13,0,3:17:15:36,39,60,0,21,15 0/2:12,0,6:18:36:36,42,92,0,49,43 1/1:15,1,2:18:3:26,3,0,26,3,26 0/1:6,1,0:7:17:25,0,17,28,20,47 +chr5 147819366 rs10051223 T C 1479.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.725;DB;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.6734;MLEAC=4;MLEAF=0.500;MQ=37.85;MQ0=0;MQRankSum=0.907;QD=14.51;ReadPosRankSum=0.428;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/0:27,0:27:72:0,72,914 1/1:13,23:36:42:916,42,0 0/1:23,12:35:99:402,0,492 0/1:24,7:31:99:210,0,362 +chr5 148206473 rs1042714 G C 606.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.349;DB;DP=98;Dels=0.00;FS=11.694;HaplotypeScore=4.7220;MLEAC=3;MLEAF=0.375;MQ=31.69;MQ0=0;MQRankSum=0.110;QD=7.68;ReadPosRankSum=0.729;SB=-2.079e+02 GT:AD:DP:GQ:PL 0/0:15,0:19:30:0,30,344 0/1:11,11:22:99:288,0,184 0/1:16,9:29:99:255,0,202 0/1:19,5:28:99:107,0,164 +chr5 148407762 . C G 43.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.886;DP=323;Dels=0.00;FS=64.998;HaplotypeScore=9.0160;MLEAC=1;MLEAF=0.125;MQ=35.14;MQ0=0;MQRankSum=-3.949;QD=0.54;ReadPosRankSum=2.929;SB=-3.456e+00 GT:AD:DP:GQ:PL 0/1:73,9:82:80:80,0,1833 0/0:70,2:72:94:0,94,1636 0/0:103,1:104:99:0,250,3059 0/0:61,3:65:74:0,74,1599 +chr5 148431709 . A T 408.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.474;DP=141;Dels=0.02;FS=9.214;HaplotypeScore=4.1573;MLEAC=4;MLEAF=0.500;MQ=37.21;MQ0=0;MQRankSum=-3.604;QD=2.90;ReadPosRankSum=2.885;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,9:42:99:207,0,981 0/1:37,6:43:99:100,0,1075 0/1:40,5:45:89:89,0,996 0/1:6,2:8:55:55,0,148 +chr5 148622240 . C G 368.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.751;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.5430;MLEAC=4;MLEAF=0.500;MQ=32.24;MQ0=0;MQRankSum=-2.666;QD=5.19;ReadPosRankSum=4.634;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:13:64:64,0,274 0/1:17,7:24:99:157,0,312 0/1:12,5:17:59:59,0,310 0/1:11,6:17:99:131,0,202 +chr5 148679239 rs113265380 T A 75.33 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.079;DB;DP=94;Dels=0.01;FS=2.332;HaplotypeScore=3.0779;MLEAC=2;MLEAF=0.250;MQ=30.36;MQ0=0;MQRankSum=-0.774;QD=1.57;ReadPosRankSum=-1.850;SB=0.956 GT:AD:DP:GQ:PL 0/0:25,1:26:8:0,8,395 0/1:18,4:22:85:85,0,311 0/1:23,3:26:30:30,0,532 0/0:18,1:19:3:0,3,343 +chr5 148886785 . T A 139.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.323;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.4451;MLEAC=3;MLEAF=0.375;MQ=24.42;MQ0=0;MQRankSum=-0.038;QD=3.87;ReadPosRankSum=2.374;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,5:18:94:94,0,121 0/0:14,1:15:5:0,5,305 0/1:10,3:13:50:50,0,234 0/1:2,3:5:20:37,0,20 +chr5 148925093 . T G 125.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.911;DP=78;Dels=0.03;FS=32.830;HaplotypeScore=14.4114;MLEAC=3;MLEAF=0.375;MQ=16.60;MQ0=0;MQRankSum=1.057;QD=2.10;ReadPosRankSum=1.373;SB=-1.834e+00 GT:AD:DP:GQ:PL 0/1:14,9:23:28:127,0,28 0/0:15,2:17:3:0,3,27 0/1:18,6:24:20:20,0,20 0/1:7,5:12:20:20,0,34 +chr5 149008467 rs3733662 C A 193.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.613;DB;DP=91;Dels=0.00;FS=1.549;HaplotypeScore=4.4991;MLEAC=1;MLEAF=0.125;MQ=28.49;MQ0=0;MQRankSum=2.372;QD=10.21;ReadPosRankSum=2.959;SB=-8.795e+01 GT:AD:DP:GQ:PL 0/0:20,0:21:36:0,36,428 0/1:12,7:19:99:230,0,158 0/0:26,0:26:57:0,57,607 0/0:25,0:25:45:0,45,513 +chr5 149210493 . C A 183.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.406;DP=111;Dels=0.02;FS=11.967;HaplotypeScore=13.6425;MLEAC=4;MLEAF=0.500;MQ=31.69;MQ0=0;MQRankSum=-0.394;QD=1.65;ReadPosRankSum=1.681;SB=-1.568e+00 GT:AD:DP:GQ:PL 0/1:23,2:25:2:2,0,487 0/1:21,3:24:60:60,0,336 0/1:20,4:24:64:64,0,336 0/1:30,6:36:98:98,0,444 +chr5 149216366 . G T 41.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.474;DP=169;Dels=0.01;FS=86.062;HaplotypeScore=10.2557;MLEAC=2;MLEAF=0.250;MQ=33.46;MQ0=0;MQRankSum=-3.601;QD=0.42;ReadPosRankSum=-0.037;SB=-9.711e-01 GT:AD:DP:GQ:PL 0/0:28,1:30:19:0,19,670 0/1:43,7:50:27:27,0,960 0/1:43,6:49:56:56,0,901 0/0:38,1:39:56:0,56,1001 +chr5 149245751 . A C 39.53 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.947;DP=95;Dels=0.00;FS=42.979;HaplotypeScore=5.7197;MLEAC=1;MLEAF=0.125;MQ=36.11;MQ0=0;MQRankSum=-2.901;QD=0.79;ReadPosRankSum=-0.299;SB=-6.439e+00 GT:AD:DP:GQ:PL 0/1:22,4:26:74:74,0,460 0/0:27,0:27:33:0,33,397 0/1:21,2:24:1:1,0,451 0/0:17,1:18:9:0,9,489 +chr5 149283242 . T A 32 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.328;DP=399;Dels=0.00;FS=17.002;HaplotypeScore=5.1077;MLEAC=1;MLEAF=0.125;MQ=35.06;MQ0=0;MQRankSum=-2.324;QD=0.49;ReadPosRankSum=1.033;SB=-5.454e+00 GT:AD:DP:GQ:PL 0/0:99,8:107:23:0,23,2509 0/0:114,5:119:99:0,162,3318 0/0:104,3:108:99:0,171,2950 0/1:57,8:65:68:68,0,1314 +chr5 149360877 rs30832 T C 2206.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=6.926;DB;DP=116;Dels=0.01;FS=115.789;HaplotypeScore=9.7950;MLEAC=4;MLEAF=0.500;MQ=32.83;MQ0=0;MQRankSum=4.449;QD=19.02;ReadPosRankSum=-1.321;SB=-2.256e+02 GT:AD:DP:GQ:PL 0/1:10,18:28:99:549,0,118 0/1:14,17:31:99:540,0,146 0/1:16,23:39:27:819,0,27 0/1:7,10:17:85:341,0,85 +chr5 149374932 rs10875553 T C 7496.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.725;DB;DP=249;Dels=0.01;FS=0.000;HaplotypeScore=1.4815;MLEAC=7;MLEAF=0.875;MQ=38.73;MQ0=0;MQRankSum=-3.524;QD=30.10;ReadPosRankSum=1.434;SB=-3.473e+03 GT:AD:DP:GQ:PL 1/1:3,60:63:99:2282,122,0 0/1:38,24:62:99:803,0,1227 1/1:6,63:69:99:2524,160,0 1/1:3,50:53:99:1887,101,0 +chr5 149510152 . C A 230.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.034;DP=150;Dels=0.03;FS=52.557;HaplotypeScore=38.9633;MLEAC=4;MLEAF=0.500;MQ=23.12;MQ0=0;MQRankSum=-3.549;QD=1.54;ReadPosRankSum=4.246;SB=-1.369e-02 GT:AD:DP:GQ:PL 0/1:27,8:36:45:45,0,366 0/1:23,7:32:33:33,0,323 0/1:35,8:43:99:102,0,457 0/1:23,9:34:93:93,0,269 +chr5 149576573 . C T 169.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.266;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.6869;MLEAC=3;MLEAF=0.375;MQ=25.46;MQ0=0;MQRankSum=1.738;QD=4.83;ReadPosRankSum=2.750;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:12:0,12,108 0/1:14,2:16:26:26,0,171 0/1:3,6:9:56:140,0,56 0/1:8,2:10:46:46,0,65 +chr5 149584509 . A G 37.38 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.485;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=1.6651;MLEAC=4;MLEAF=0.500;MQ=27.49;MQ0=0;MQRankSum=-0.911;QD=0.51;ReadPosRankSum=1.620;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:7:7,0,177 0/1:21,4:25:58:58,0,210 0/1:17,1:19:8:8,0,216 0/1:13,1:14:4:4,0,192 +chr5 149585012 . T C 30.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.728;DP=97;Dels=0.00;FS=4.649;HaplotypeScore=3.5724;MLEAC=1;MLEAF=0.125;MQ=29.83;MQ0=0;MQRankSum=-2.679;QD=1.48;ReadPosRankSum=-0.926;SB=-1.114e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:60:0,60,723 0/0:25,0:25:48:0,48,525 0/0:27,0:27:69:0,69,793 0/1:14,7:21:67:67,0,301 +chr5 149755357 . G T 121.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.587;DP=132;Dels=0.00;FS=24.011;HaplotypeScore=24.5106;MLEAC=3;MLEAF=0.375;MQ=26.69;MQ0=0;MQRankSum=-0.192;QD=1.29;ReadPosRankSum=-0.223;SB=-1.567e+00 GT:AD:DP:GQ:PL 0/1:29,3:32:5:5,0,438 0/1:22,7:29:99:112,0,247 0/1:29,4:33:46:46,0,501 0/0:38,0:38:63:0,63,661 +chr5 149767509 . A G 140.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.783;DP=95;Dels=0.04;FS=13.685;HaplotypeScore=16.4079;MLEAC=4;MLEAF=0.500;MQ=29.20;MQ0=0;MQRankSum=1.515;QD=1.48;ReadPosRankSum=1.035;SB=-4.791e-02 GT:AD:DP:GQ:PL 0/1:19,2:21:40:40,0,118 0/1:18,1:20:19:19,0,181 0/1:26,2:28:32:32,0,237 0/1:18,4:22:92:92,0,170 +chr5 149785774 . GGT G 390.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.524;DP=60;FS=9.542;HaplotypeScore=39.0592;MLEAC=4;MLEAF=0.500;MQ=21.31;MQ0=0;MQRankSum=-1.428;QD=6.51;ReadPosRankSum=0.343;SB=-3.987e-01 GT:AD:DP:GQ:PL 0/1:9,5:11:41:301,0,41 0/1:14,1:10:5:5,0,194 0/1:14,2:11:31:31,0,147 0/1:12,2:7:61:104,0,61 +chr5 149921251 rs2304063 G C 1977.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.098;DB;DP=76;Dels=0.00;FS=8.037;HaplotypeScore=1.0730;MLEAC=7;MLEAF=0.875;MQ=31.08;MQ0=0;MQRankSum=1.920;QD=26.02;ReadPosRankSum=0.097;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,11:15:33:394,33,0 0/1:9,7:16:99:211,0,151 1/1:0,20:20:60:681,60,0 1/1:4,21:25:63:736,63,0 +chr5 150040524 rs7718346 C T 61.22 . AC=4;AF=1.00;AN=4;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=24.71;MQ0=0;QD=15.30;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:2:3:31,3,0 1/1:0,2:2:6:64,6,0 +chr5 150075348 . T G 273.46 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.896;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.2333;MLEAC=5;MLEAF=0.625;MQ=28.37;MQ0=0;MQRankSum=0.850;QD=6.67;ReadPosRankSum=2.550;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,5:12:14:119,0,14 0/1:9,5:14:54:120,0,54 0/1:9,2:11:31:31,0,99 1/1:2,2:4:6:47,6,0 +chr5 150175566 . T A 69.36 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.823;DP=99;Dels=0.01;FS=38.317;HaplotypeScore=3.0452;MLEAC=2;MLEAF=0.250;MQ=28.09;MQ0=0;MQRankSum=-2.096;QD=1.54;ReadPosRankSum=0.046;SB=-2.569e+00 GT:AD:DP:GQ:PL 0/0:25,2:27:4:0,4,521 0/1:24,5:29:80:80,0,415 0/0:23,4:27:6:0,6,426 0/1:13,2:15:29:29,0,162 +chr5 150406592 . C G 106.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.290;DP=124;Dels=0.01;FS=22.131;HaplotypeScore=23.2612;MLEAC=3;MLEAF=0.375;MQ=23.12;MQ0=0;MQRankSum=0.455;QD=1.14;ReadPosRankSum=2.389;SB=0.222 GT:AD:DP:GQ:PL 0/1:24,4:28:34:34,0,204 0/1:32,6:38:76:76,0,95 0/0:29,0:29:18:0,18,156 0/1:24,4:28:40:40,0,122 +chr5 150413318 . G T 69.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.126;DP=50;Dels=0.00;FS=19.094;HaplotypeScore=3.4294;MLEAC=2;MLEAF=0.250;MQ=32.51;MQ0=0;MQRankSum=-2.928;QD=3.87;ReadPosRankSum=0.468;SB=-6.735e+00 GT:AD:DP:GQ:PL 0/1:5,5:10:59:99,0,59 0/0:16,1:17:27:0,27,283 0/0:15,0:15:30:0,30,414 0/1:7,1:8:11:11,0,218 +chr5 150565724 rs248426 C T 702.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=5.165;DB;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=15.2104;MLEAC=1;MLEAF=0.125;MQ=33.20;MQ0=0;MQRankSum=3.251;QD=15.28;ReadPosRankSum=1.920;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,21:46:99:739,0,465 0/0:40,0:40:81:0,81,1002 0/0:41,0:41:99:0,111,1316 0/0:33,0:34:36:0,36,414 +chr5 150714926 . C G 43.12 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.037;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.2319;MLEAC=2;MLEAF=0.250;MQ=27.16;MQ0=0;MQRankSum=-2.055;QD=1.05;ReadPosRankSum=3.123;SB=-3.115e-02 GT:AD:DP:GQ:PL 0/0:18,2:20:2:0,2,225 0/1:16,3:20:25:25,0,192 0/0:17,0:17:39:0,39,408 0/1:15,6:21:58:58,0,274 +chr5 150847455 . G A 108.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.468;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=5.7566;MLEAC=3;MLEAF=0.375;MQ=25.13;MQ0=0;MQRankSum=1.355;QD=1.47;ReadPosRankSum=0.360;SB=-7.522e-02 GT:AD:DP:GQ:PL 0/0:26,1:27:33:0,33,355 0/1:20,4:24:50:50,0,162 0/1:25,2:27:17:17,0,230 0/1:18,4:22:85:85,0,131 +chr5 150885568 . A C 204.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.679;DP=218;Dels=0.00;FS=125.293;HaplotypeScore=2.5102;MLEAC=3;MLEAF=0.375;MQ=37.35;MQ0=0;MQRankSum=-6.010;QD=1.29;ReadPosRankSum=2.023;SB=0.785 GT:AD:DP:GQ:PL 0/1:44,9:53:99:139,0,1380 0/0:56,3:59:87:0,87,1820 0/1:52,7:59:75:75,0,1626 0/1:41,6:47:34:34,0,1289 +chr5 150914119 . C T 84.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.840;DP=129;Dels=0.01;FS=110.052;HaplotypeScore=9.1374;MLEAC=3;MLEAF=0.375;MQ=33.89;MQ0=0;MQRankSum=-4.312;QD=0.95;ReadPosRankSum=0.213;SB=-3.055e+00 GT:AD:DP:GQ:PL 0/1:20,5:25:99:104,0,505 0/1:27,5:32:10:10,0,729 0/0:36,3:39:16:0,16,1130 0/1:28,4:32:13:13,0,807 +chr5 151177040 . A C 131.68 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.126;DP=73;Dels=0.00;FS=4.912;HaplotypeScore=2.6256;MLEAC=6;MLEAF=0.750;MQ=21.27;MQ0=0;MQRankSum=2.164;QD=1.80;ReadPosRankSum=-1.340;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:13,2:15:6:64,6,0 0/1:26,3:29:16:16,0,219 0/1:14,1:15:21:21,0,72 1/1:9,5:14:9:75,9,0 +chr5 151202295 . A C 289.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.856;DP=198;Dels=0.00;FS=47.808;HaplotypeScore=2.0469;MLEAC=4;MLEAF=0.500;MQ=34.52;MQ0=0;MQRankSum=-2.606;QD=1.46;ReadPosRankSum=-0.384;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:50,7:57:61:61,0,1214 0/1:43,5:48:66:66,0,1102 0/1:39,6:45:89:89,0,920 0/1:41,7:48:99:116,0,985 +chr5 151239442 . A C 87.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.132;DP=255;Dels=0.00;FS=37.214;HaplotypeScore=2.1070;MLEAC=3;MLEAF=0.375;MQ=35.88;MQ0=0;MQRankSum=-3.807;QD=0.46;ReadPosRankSum=-1.506;SB=0.911 GT:AD:DP:GQ:PL 0/1:59,7:66:63:63,0,1655 0/1:64,6:70:30:30,0,1927 0/0:59,4:63:32:0,32,1561 0/1:50,6:56:38:38,0,1393 +chr5 153432970 rs2255493 C T 4083.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.447;DB;DP=223;Dels=0.00;FS=6.583;HaplotypeScore=0.8928;MLEAC=5;MLEAF=0.625;MQ=39.01;MQ0=0;MQRankSum=-0.652;QD=18.31;ReadPosRankSum=0.323;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1892,144,0 0/1:28,28:56:99:935,0,938 0/1:37,23:60:99:743,0,1194 0/1:41,18:59:99:513,0,1412 +chr5 153833018 . G C 204.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.608;DP=163;Dels=0.00;FS=53.125;HaplotypeScore=2.2868;MLEAC=3;MLEAF=0.375;MQ=35.03;MQ0=0;MQRankSum=-4.094;QD=1.78;ReadPosRankSum=0.000;SB=0.312 GT:AD:DP:GQ:PL 0/1:41,4:45:12:12,0,1052 0/1:29,8:37:99:112,0,591 0/0:45,3:48:18:0,18,1028 0/1:27,6:33:99:123,0,616 +chr5 153856996 rs11748765 T A 451.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.525;DB;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.4869;MLEAC=3;MLEAF=0.375;MQ=36.43;MQ0=0;MQRankSum=-1.566;QD=6.45;ReadPosRankSum=0.260;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:81:0,81,1070 0/1:14,5:19:99:152,0,416 0/1:18,10:29:99:272,0,477 0/1:17,3:22:71:71,0,405 +chr5 154179360 . G T 43.23 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.655;DP=160;Dels=0.01;FS=6.778;HaplotypeScore=10.8255;MLEAC=1;MLEAF=0.125;MQ=31.26;MQ0=0;MQRankSum=-2.751;QD=1.08;ReadPosRankSum=-1.430;SB=-6.277e-01 GT:AD:DP:GQ:PL 0/0:45,3:48:7:0,7,835 0/1:34,6:40:79:79,0,431 0/0:35,2:37:29:0,29,568 0/0:33,1:34:50:0,50,915 +chr5 154306972 rs2258437 T C 1830.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.030;DB;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3504;MLEAC=8;MLEAF=1.00;MQ=33.49;MQ0=0;MQRankSum=1.764;QD=24.40;ReadPosRankSum=1.764;SB=-5.679e+02 GT:AD:DP:GQ:PL 1/1:7,16:23:24:530,24,0 1/1:5,22:27:66:760,66,0 1/1:4,13:18:39:450,39,0 1/1:3,4:7:12:129,12,0 +chr5 154308307 rs1035368 G A 2465.13 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.257;DB;DP=83;Dels=0.00;FS=46.550;HaplotypeScore=0.5505;MLEAC=8;MLEAF=1.00;MQ=31.77;MQ0=0;MQRankSum=3.559;QD=29.70;ReadPosRankSum=0.119;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,12:14:9:405,9,0 1/1:3,26:29:72:876,72,0 1/1:3,20:23:54:667,54,0 1/1:2,15:17:45:556,45,0 +chr5 154335837 . G T 37.24 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.396;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5459;MLEAC=3;MLEAF=0.500;MQ=29.04;MQ0=0;MQRankSum=-0.736;QD=2.66;ReadPosRankSum=1.642;SB=21.87 GT:AD:DP:GQ:PL 0/1:8,3:11:46:46,0,132 0/0:11,0:11:18:0,18,194 ./. 1/1:2,1:3:3:31,3,0 +chr5 156482459 rs1809941 G T 887.94 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.007;DB;DP=82;Dels=0.04;FS=0.000;HaplotypeScore=2.4400;MLEAC=7;MLEAF=0.875;MQ=22.27;MQ0=0;MQRankSum=2.098;QD=10.83;ReadPosRankSum=1.163;SB=-4.592e+02 GT:AD:DP:GQ:PL 1/1:3,19:22:21:221,21,0 1/1:1,15:16:30:348,30,0 0/1:5,17:22:10:203,0,10 1/1:5,14:19:15:159,15,0 +chr5 156753143 . A T 37.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.057;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.7229;MLEAC=2;MLEAF=0.250;MQ=38.64;MQ0=0;MQRankSum=-3.853;QD=0.43;ReadPosRankSum=-3.414;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:45,1:46:99:0,120,1603 0/1:37,5:42:53:53,0,901 0/1:40,5:45:26:26,0,1328 0/0:32,0:32:75:0,75,984 +chr5 156816312 . G T 49.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.677;DP=89;Dels=0.01;FS=33.353;HaplotypeScore=3.3415;MLEAC=4;MLEAF=0.500;MQ=27.03;MQ0=0;MQRankSum=2.005;QD=0.55;ReadPosRankSum=2.026;SB=-2.588e+00 GT:AD:DP:GQ:PL 0/1:14,1:15:1:1,0,236 0/1:19,2:21:28:28,0,175 0/1:26,2:28:10:10,0,366 0/1:21,3:24:50:50,0,283 +chr5 157073791 . T A 49.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.502;DP=113;Dels=0.00;FS=18.839;HaplotypeScore=7.4114;MLEAC=2;MLEAF=0.250;MQ=34.53;MQ0=0;MQRankSum=-3.735;QD=0.70;ReadPosRankSum=1.669;SB=1.53 GT:AD:DP:GQ:PL 0/1:31,5:36:59:59,0,754 0/0:30,0:31:57:0,57,762 0/1:29,4:34:31:31,0,854 0/0:11,1:12:6:0,6,370 +chr5 157106794 rs34600005 C T 348.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.883;DB;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=1.4753;MLEAC=5;MLEAF=0.625;MQ=28.72;MQ0=0;MQRankSum=0.802;QD=6.46;ReadPosRankSum=2.669;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,8:16:98:236,0,98 0/1:16,3:20:39:39,0,370 0/1:10,4:14:92:92,0,200 1/1:2,1:3:3:24,3,0 +chr5 157218993 . T A 153.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.571;DP=192;Dels=0.00;FS=21.531;HaplotypeScore=0.4338;MLEAC=3;MLEAF=0.375;MQ=37.16;MQ0=0;MQRankSum=-4.410;QD=1.21;ReadPosRankSum=3.340;SB=-2.447e+00 GT:AD:DP:GQ:PL 0/1:37,8:45:99:156,0,925 0/1:45,4:49:3:3,0,1090 0/0:64,1:65:99:0,153,1968 0/1:29,4:33:35:35,0,624 +chr5 157616085 . A G 58.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.549;DP=42;Dels=0.00;FS=25.901;HaplotypeScore=0.7585;MLEAC=2;MLEAF=0.250;MQ=34.25;MQ0=0;MQRankSum=-2.186;QD=2.79;ReadPosRankSum=-1.167;SB=-2.493e+00 GT:AD:DP:GQ:PL 0/1:11,3:14:45:45,0,239 0/1:4,3:7:55:55,0,113 0/0:9,0:9:21:0,21,261 0/0:12,0:12:24:0,24,276 +chr5 158630642 . T C 42.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.990;DP=64;Dels=0.05;FS=0.000;HaplotypeScore=12.7881;MLEAC=3;MLEAF=0.375;MQ=15.34;MQ0=0;MQRankSum=0.621;QD=0.91;ReadPosRankSum=-0.520;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:13:35:36,0,35 0/1:13,1:14:17:17,0,18 0/0:13,2:16:3:0,3,23 0/1:12,6:18:31:31,0,57 +chr5 159623092 rs138086650 C T 94.30 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.720;DB;DP=7;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=26.59;MQ0=0;MQRankSum=0.720;QD=13.47;ReadPosRankSum=0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:39,3,0 0/1:2,1:4:21:21,0,29 1/1:0,2:2:6:73,6,0 ./. +chr5 159640652 rs6556482 G A 963.82 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.924;DB;DP=78;Dels=0.03;FS=29.902;HaplotypeScore=1.8373;MLEAC=7;MLEAF=0.875;MQ=24.29;MQ0=0;MQRankSum=2.441;QD=12.36;ReadPosRankSum=2.165;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:6,19:25:42:481,42,0 1/1:4,13:17:21:221,21,0 1/1:6,12:18:21:212,21,0 0/1:7,9:16:18:94,0,18 +chr5 159820895 . G T 223.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.508;DP=89;Dels=0.00;FS=11.066;HaplotypeScore=8.1805;MLEAC=4;MLEAF=0.500;MQ=29.76;MQ0=0;MQRankSum=-3.459;QD=2.51;ReadPosRankSum=2.533;SB=-6.778e-02 GT:AD:DP:GQ:PL 0/1:30,2:32:15:15,0,323 0/1:18,6:24:65:65,0,301 0/1:17,6:23:94:140,0,94 0/1:6,4:10:28:46,0,28 +chr5 159834725 . A T 324.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.015;DP=144;Dels=0.01;FS=89.173;HaplotypeScore=19.4989;MLEAC=4;MLEAF=0.500;MQ=32.51;MQ0=0;MQRankSum=-6.400;QD=2.25;ReadPosRankSum=2.823;SB=-1.467e-02 GT:AD:DP:GQ:PL 0/1:24,12:36:99:164,0,474 0/1:30,8:38:64:64,0,719 0/1:37,11:49:99:108,0,744 0/1:17,3:20:31:31,0,325 +chr5 160047250 . C A 42.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.828;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.9942;MLEAC=2;MLEAF=0.250;MQ=30.66;MQ0=0;MQRankSum=1.511;QD=1.09;ReadPosRankSum=-0.906;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:21:0,21,202 0/1:19,3:22:64:64,0,312 0/1:15,2:17:19:19,0,308 0/0:13,2:15:6:0,6,310 +chr5 160047587 . A G 67.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.544;DP=47;Dels=0.02;FS=11.301;HaplotypeScore=7.3669;MLEAC=4;MLEAF=0.500;MQ=28.43;MQ0=0;MQRankSum=-0.078;QD=1.45;ReadPosRankSum=1.737;SB=-2.381e-01 GT:AD:DP:GQ:PL 0/1:7,2:9:58:58,0,114 0/1:10,1:11:12:12,0,146 0/1:19,2:21:25:25,0,232 0/1:4,1:5:15:15,0,45 +chr5 161579441 rs211013 A G 4802.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.816;DB;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=0.7416;MLEAC=7;MLEAF=0.875;MQ=38.66;MQ0=0;MQRankSum=0.999;QD=31.39;ReadPosRankSum=1.356;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:3,37:40:82:1501,82,0 0/1:21,19:40:99:663,0,602 1/1:4,55:59:99:2202,132,0 1/1:1,11:12:33:436,33,0 +chr5 167254923 rs6555771 A G 37.01 . AC=4;AF=1.00;AN=4;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=15.34;MQ0=0;QD=7.40;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:3:3:36,3,0 1/1:1,1:2:3:34,3,0 +chr5 167689030 . T C 53.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.814;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.8299;MLEAC=3;MLEAF=0.375;MQ=33.38;MQ0=0;MQRankSum=-3.257;QD=0.55;ReadPosRankSum=-1.390;SB=-3.562e-02 GT:AD:DP:GQ:PL 0/1:30,3:33:21:21,0,625 0/1:28,3:31:37:37,0,522 0/1:30,4:35:38:38,0,521 0/0:25,1:26:6:0,6,502 +chr5 167835766 rs6887919 T C 412.71 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.036;DB;DP=32;Dels=0.00;FS=3.010;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=31.82;MQ0=0;MQRankSum=-0.735;QD=12.90;ReadPosRankSum=1.150;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:81:81,0,270 1/1:1,6:7:18:184,18,0 0/1:5,6:11:99:167,0,120 0/1:2,1:3:26:26,0,64 +chr5 167919726 rs2305727 A G 1466.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.803;DB;DP=205;Dels=0.00;FS=14.882;HaplotypeScore=10.4283;MLEAC=5;MLEAF=0.625;MQ=35.01;MQ0=0;MQRankSum=-0.870;QD=7.15;ReadPosRankSum=-1.580;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:21,20:41:39:746,39,0 0/1:40,11:51:99:291,0,988 0/1:61,13:74:99:280,0,1868 0/1:29,8:38:99:195,0,715 +chr5 167980284 . G A 43.69 . AC=1;AF=0.167;AN=6;BaseQRankSum=0.324;DP=44;Dels=0.00;FS=5.544;HaplotypeScore=1.1946;MLEAC=1;MLEAF=0.167;MQ=21.50;MQ0=0;MQRankSum=1.738;QD=3.64;ReadPosRankSum=-1.620;SB=29.85 GT:AD:DP:GQ:PL ./. 0/0:14,0:14:6:0,6,57 0/1:9,3:12:56:77,0,56 0/0:8,0:8:6:0,6,66 +chr5 168100010 rs3733975 C G 977.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.615;DB;DP=66;Dels=0.03;FS=6.558;HaplotypeScore=3.2459;MLEAC=4;MLEAF=0.500;MQ=33.62;MQ0=0;MQRankSum=-0.949;QD=16.86;ReadPosRankSum=1.237;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,14:22:99:459,0,184 1/1:6,12:18:33:403,33,0 0/1:11,5:16:99:164,0,282 0/0:8,0:8:24:0,24,328 +chr5 168271627 . T G 230.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.960;DP=89;Dels=0.00;FS=33.794;HaplotypeScore=3.3480;MLEAC=3;MLEAF=0.375;MQ=33.75;MQ0=0;MQRankSum=-0.859;QD=3.29;ReadPosRankSum=1.916;SB=-2.542e+00 GT:AD:DP:GQ:PL 0/0:17,1:19:6:0,6,323 0/1:20,5:25:99:108,0,393 0/1:22,2:24:3:3,0,547 0/1:15,6:21:99:159,0,284 +chr5 168690708 . T G 54.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.464;DP=92;Dels=0.00;FS=25.939;HaplotypeScore=1.2409;MLEAC=2;MLEAF=0.250;MQ=29.86;MQ0=0;MQRankSum=-1.325;QD=1.05;ReadPosRankSum=1.911;SB=-1.364e-01 GT:AD:DP:GQ:PL 0/1:23,4:27:63:63,0,461 0/0:18,0:18:33:0,33,357 0/0:21,1:22:21:0,21,479 0/1:20,4:25:33:33,0,452 +chr5 169138909 rs2306558 G A 293.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.014;DB;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.9474;MLEAC=1;MLEAF=0.125;MQ=36.17;MQ0=0;MQRankSum=0.326;QD=10.14;ReadPosRankSum=0.775;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,99,1262 0/1:18,11:29:99:330,0,460 0/0:33,0:33:93:0,93,1214 0/0:26,0:26:60:0,60,785 +chr5 169188470 . TGG T 278.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.722;DP=89;FS=0.000;HaplotypeScore=52.4310;MLEAC=4;MLEAF=0.500;MQ=23.50;MQ0=0;MQRankSum=-2.423;QD=3.13;RPA=3,1;RU=G;ReadPosRankSum=2.941;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:17,3:12:99:170,0,130 0/1:17,3:14:34:34,0,199 0/1:22,5:16:84:84,0,317 0/1:15,1:9:13:42,0,13 +chr5 169506044 . G T 118.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.070;DP=127;Dels=0.00;FS=17.461;HaplotypeScore=30.8025;MLEAC=2;MLEAF=0.250;MQ=21.15;MQ0=0;MQRankSum=0.828;QD=1.83;ReadPosRankSum=1.077;SB=1.44 GT:AD:DP:GQ:PL 0/0:31,1:32:36:0,36,381 0/1:26,4:30:28:28,0,205 0/1:29,6:35:99:132,0,255 0/0:28,2:30:11:0,11,285 +chr5 169507174 . G T 426.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.976;DP=185;Dels=0.00;FS=125.973;HaplotypeScore=3.7068;MLEAC=4;MLEAF=0.500;MQ=33.65;MQ0=0;MQRankSum=-1.103;QD=2.31;ReadPosRankSum=0.347;SB=-1.411e-02 GT:AD:DP:GQ:PL 0/1:32,10:42:99:230,0,722 0/1:33,5:38:32:32,0,920 0/1:56,7:63:61:61,0,1431 0/1:35,7:42:99:146,0,894 +chr5 169509797 . A G 216.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.074;DP=80;Dels=0.03;FS=6.354;HaplotypeScore=17.0343;MLEAC=3;MLEAF=0.375;MQ=26.48;MQ0=0;MQRankSum=0.548;QD=3.68;ReadPosRankSum=1.513;SB=0.082 GT:AD:DP:GQ:PL 0/1:15,4:20:38:117,0,38 0/1:13,5:18:27:43,0,27 0/0:20,0:20:6:0,6,60 0/1:16,4:20:60:99,0,60 +chr5 169567721 . T A 37.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.948;DP=61;Dels=0.02;FS=21.673;HaplotypeScore=4.3414;MLEAC=2;MLEAF=0.250;MQ=15.77;MQ0=0;MQRankSum=-1.857;QD=1.24;ReadPosRankSum=-0.928;SB=0.198 GT:AD:DP:GQ:PL 1/1:12,2:14:3:31,3,0 0/0:13,1:14:12:0,12,131 0/1:12,4:16:49:49,0,66 0/0:14,2:16:12:0,12,139 +chr5 169688138 . A G 53.22 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.266;DP=106;Dels=0.02;FS=12.650;HaplotypeScore=1.6182;MLEAC=2;MLEAF=0.250;MQ=31.67;MQ0=0;MQRankSum=-2.578;QD=0.90;ReadPosRankSum=2.414;SB=-9.486e-02 GT:AD:DP:GQ:PL 0/1:23,5:28:66:66,0,568 0/1:28,3:31:28:28,0,495 0/0:27,1:28:10:0,10,444 0/0:16,1:17:9:0,9,505 +chr5 169702444 . C A 93.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.263;DP=143;Dels=0.00;FS=9.165;HaplotypeScore=14.9288;MLEAC=3;MLEAF=0.375;MQ=25.66;MQ0=0;MQRankSum=1.088;QD=0.85;ReadPosRankSum=0.960;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,3:35:26:26,0,377 0/0:33,0:33:33:0,33,347 0/1:32,5:37:71:71,0,349 0/1:34,4:38:40:40,0,226 +chr5 169720333 . A G 53.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.400;DP=71;Dels=0.00;FS=2.382;HaplotypeScore=2.9704;MLEAC=3;MLEAF=0.375;MQ=30.05;MQ0=0;MQRankSum=-1.172;QD=1.02;ReadPosRankSum=-0.011;SB=-3.110e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:36:0,36,386 0/1:17,4:21:33:33,0,288 0/1:13,3:16:42:42,0,267 0/1:14,2:16:22:22,0,259 +chr5 169796021 . G T 35.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DP=5;Dels=0.00;FS=3.979;HaplotypeScore=0.9976;MLEAC=4;MLEAF=1.00;MQ=27.45;MQ0=0;MQRankSum=0.736;QD=11.67;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:26,3,0 ./. ./. 1/1:0,1:1:3:42,3,0 +chr5 170216245 . T G 201.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.852;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.2045;MLEAC=4;MLEAF=0.500;MQ=35.27;MQ0=0;MQRankSum=0.258;QD=1.69;ReadPosRankSum=0.957;SB=-1.195e-02 GT:AD:DP:GQ:PL 0/1:27,6:33:99:100,0,664 0/1:17,3:20:42:42,0,345 0/1:29,5:36:95:95,0,573 0/1:28,2:30:6:6,0,534 +chr5 170324374 . T A 64.83 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.377;DP=18;Dels=0.00;FS=2.447;HaplotypeScore=2.4514;MLEAC=4;MLEAF=0.667;MQ=14.93;MQ0=0;MQRankSum=1.093;QD=5.89;ReadPosRankSum=1.656;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,2:5:3:0,3,22 0/1:4,1:5:16:16,0,18 1/1:2,4:6:9:89,9,0 ./. +chr5 170338059 . C G 30.13 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.530;DP=98;Dels=0.00;FS=11.874;HaplotypeScore=1.3816;MLEAC=4;MLEAF=0.500;MQ=18.01;MQ0=0;MQRankSum=2.430;QD=0.44;ReadPosRankSum=-0.691;SB=1.15 GT:AD:DP:GQ:PL 0/0:29,1:30:4:0,4,282 0/1:24,1:25:20:20,0,34 0/1:33,2:35:13:13,0,53 1/1:7,1:8:3:39,3,0 +chr5 170847464 . C G 156.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.341;DP=102;Dels=0.04;FS=2.477;HaplotypeScore=7.3012;MLEAC=3;MLEAF=0.375;MQ=24.73;MQ0=0;MQRankSum=-0.944;QD=2.36;ReadPosRankSum=-1.218;SB=0.227 GT:AD:DP:GQ:PL 0/1:19,4:23:61:61,0,182 0/0:29,4:34:13:0,13,392 0/1:19,5:24:93:93,0,278 0/1:12,4:17:45:45,0,78 +chr5 171706322 . G T 36.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.235;DP=111;Dels=0.01;FS=30.730;HaplotypeScore=5.7924;MLEAC=2;MLEAF=0.250;MQ=33.42;MQ0=0;MQRankSum=-0.810;QD=0.79;ReadPosRankSum=-2.074;SB=-3.514e+00 GT:AD:DP:GQ:PL 0/0:30,0:30:48:0,48,565 0/1:32,4:36:32:32,0,772 0/0:35,0:35:66:0,66,803 0/1:7,2:9:46:46,0,86 +chr5 172571509 . A C 30.11 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.837;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=3.5340;MLEAC=2;MLEAF=0.250;MQ=24.08;MQ0=0;MQRankSum=-0.262;QD=1.12;ReadPosRankSum=-0.496;SB=-1.185e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:17:17,0,91 0/0:13,0:13:18:0,18,188 0/1:12,5:17:53:53,0,98 0/0:3,0:3:3:0,3,31 +chr5 172585927 rs141550865 TC T 734.30 . AC=8;AF=1.00;AN=8;DB;DP=25;FS=0.000;HaplotypeScore=3.9349;MLEAC=8;MLEAF=1.00;MQ=30.99;MQ0=0;QD=29.37;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:0,3:4:9:136,9,0 1/1:1,9:6:18:244,18,0 1/1:2,6:6:18:266,18,0 1/1:0,3:3:9:136,9,0 +chr5 174156168 rs4242182 T C 3173.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.321;DB;DP=123;Dels=0.02;FS=3.049;HaplotypeScore=1.8300;MLEAC=8;MLEAF=1.00;MQ=29.61;MQ0=0;MQRankSum=-0.008;QD=25.80;ReadPosRankSum=2.444;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:3,24:27:60:731,60,0 1/1:1,28:29:72:875,72,0 1/1:3,33:36:75:905,75,0 1/1:2,27:29:57:702,57,0 +chr5 174869413 . G T 164.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.797;DP=171;Dels=0.01;FS=136.649;HaplotypeScore=2.6814;MLEAC=4;MLEAF=0.500;MQ=37.09;MQ0=0;MQRankSum=-2.351;QD=0.96;ReadPosRankSum=2.454;SB=0.310 GT:AD:DP:GQ:PL 0/1:42,4:46:26:26,0,1297 0/1:34,5:39:49:49,0,1153 0/1:45,5:50:46:46,0,1366 0/1:29,6:35:86:86,0,797 +chr5 174937202 . C G 80.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.531;DP=64;Dels=0.00;FS=2.482;HaplotypeScore=3.2698;MLEAC=4;MLEAF=0.500;MQ=31.20;MQ0=0;MQRankSum=0.392;QD=1.26;ReadPosRankSum=0.748;SB=-1.320e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:70:70,0,126 0/1:12,1:13:7:7,0,121 0/1:18,2:20:34:34,0,172 0/1:18,1:19:11:11,0,219 +chr5 174943694 . T C 68.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.660;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.4260;MLEAC=3;MLEAF=0.375;MQ=26.23;MQ0=0;MQRankSum=1.065;QD=1.26;ReadPosRankSum=-1.511;SB=0.348 GT:AD:DP:GQ:PL 0/1:16,2:18:35:35,0,222 0/0:20,1:21:11:0,11,340 0/1:22,2:24:26:26,0,310 0/1:10,2:12:50:50,0,78 +chr5 175772092 . G C 191.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.346;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.1570;MLEAC=3;MLEAF=0.375;MQ=36.39;MQ0=0;MQRankSum=-1.896;QD=2.70;ReadPosRankSum=1.212;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,1:25:15:0,15,456 0/1:26,4:30:64:64,0,653 0/1:22,5:27:99:100,0,360 0/1:11,3:14:71:71,0,205 +chr5 175916083 rs10054778 T C 215.14 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.985;DB;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5849;MLEAC=1;MLEAF=0.125;MQ=40.07;MQ0=0;MQRankSum=1.222;QD=13.45;ReadPosRankSum=-0.433;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,7:16:99:251,0,241 0/0:20,0:20:54:0,54,700 0/0:17,0:17:48:0,48,635 0/0:4,0:4:9:0,9,94 +chr5 175933707 rs62402539 C T 61.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.348;DB;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=19.7856;MLEAC=2;MLEAF=0.250;MQ=16.87;MQ0=0;MQRankSum=0.658;QD=1.42;ReadPosRankSum=-1.568;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,10:24:61:61,0,103 0/0:27,2:29:3:0,3,357 0/1:16,3:19:40:40,0,88 0/0:15,2:17:12:0,12,113 +chr5 176024098 . A T 47.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.430;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=1.7939;MLEAC=2;MLEAF=0.250;MQ=26.48;MQ0=0;MQRankSum=-0.396;QD=1.82;ReadPosRankSum=-1.552;SB=0.367 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,26 0/1:9,2:12:34:34,0,135 0/1:10,3:13:53:53,0,160 0/0:6,1:7:9:0,9,85 +chr5 176306889 . G C 101.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.029;DP=38;Dels=0.00;FS=2.782;HaplotypeScore=3.9946;MLEAC=4;MLEAF=0.500;MQ=25.34;MQ0=0;MQRankSum=0.670;QD=2.68;ReadPosRankSum=3.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:39:39,0,67 0/1:8,2:10:15:15,0,43 0/1:7,1:9:14:14,0,55 0/1:6,3:10:19:76,0,19 +chr5 176318296 . T A 217.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.167;DP=124;Dels=0.00;FS=37.710;HaplotypeScore=5.2687;MLEAC=4;MLEAF=0.500;MQ=35.95;MQ0=0;MQRankSum=-2.392;QD=1.75;ReadPosRankSum=0.375;SB=-4.053e-02 GT:AD:DP:GQ:PL 0/1:28,3:31:21:21,0,656 0/1:29,3:32:50:50,0,558 0/1:32,7:39:99:140,0,611 0/1:18,4:22:49:49,0,425 +chr5 176517979 . G A 78.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.238;DP=110;Dels=0.02;FS=3.609;HaplotypeScore=11.3731;MLEAC=2;MLEAF=0.250;MQ=30.27;MQ0=0;MQRankSum=-2.512;QD=1.40;ReadPosRankSum=0.684;SB=-2.984e+01 GT:AD:DP:GQ:PL 0/1:27,5:32:67:67,0,447 0/0:30,1:31:48:0,48,530 0/0:21,1:22:17:0,17,395 0/1:20,3:23:53:53,0,268 +chr5 176523861 rs72494545 C T 43.22 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.406;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=23.40;MQ0=0;MQRankSum=0.406;QD=10.80;ReadPosRankSum=0.406;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:6:80,6,0 ./. 0/0:1,0:1:3:0,3,32 0/0:1,0:1:3:0,3,38 +chr5 176638960 . T G 39.21 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.503;DP=134;Dels=0.01;FS=29.801;HaplotypeScore=6.1360;MLEAC=2;MLEAF=0.250;MQ=30.69;MQ0=0;MQRankSum=-3.095;QD=0.56;ReadPosRankSum=1.515;SB=-1.487e+00 GT:AD:DP:GQ:PL 0/1:27,3:30:21:21,0,513 0/1:32,6:39:59:59,0,680 0/0:35,1:36:34:0,34,619 0/0:26,2:28:7:0,7,644 +chr5 176759087 . T G 36.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.624;DP=39;Dels=0.00;FS=9.472;HaplotypeScore=1.1068;MLEAC=2;MLEAF=0.250;MQ=28.81;MQ0=0;MQRankSum=-0.940;QD=1.74;ReadPosRankSum=2.365;SB=-3.167e+00 GT:AD:DP:GQ:PL 0/1:8,2:10:46:46,0,141 0/0:7,0:7:18:0,18,210 0/0:11,0:11:21:0,21,245 0/1:9,2:11:32:32,0,112 +chr5 176815345 . A T 72.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.071;DP=96;Dels=0.01;FS=23.509;HaplotypeScore=30.0749;MLEAC=4;MLEAF=0.500;MQ=24.72;MQ0=0;MQRankSum=-1.577;QD=1.04;ReadPosRankSum=2.214;SB=-1.614e+00 GT:AD:DP:GQ:PL 0/1:18,4:22:38:38,0,321 0/0:23,3:26:1:0,1,422 0/1:16,5:22:52:52,0,270 0/1:20,5:25:23:23,0,351 +chr5 176824836 . C G 299.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.786;DP=112;Dels=0.00;FS=42.233;HaplotypeScore=2.7170;MLEAC=3;MLEAF=0.375;MQ=29.67;MQ0=0;MQRankSum=-3.980;QD=3.66;ReadPosRankSum=0.746;SB=0.150 GT:AD:DP:GQ:PL 0/1:18,3:21:68:68,0,185 0/1:15,7:22:99:114,0,404 0/1:31,8:39:99:161,0,590 0/0:29,1:30:42:0,42,525 +chr5 176938971 . A T 41.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.734;DP=30;Dels=0.03;FS=22.825;HaplotypeScore=0.6296;MLEAC=3;MLEAF=0.375;MQ=26.64;MQ0=0;MQRankSum=-1.330;QD=1.79;ReadPosRankSum=0.347;SB=1.04 GT:AD:DP:GQ:PL 0/1:3,2:5:20:20,0,92 0/1:4,2:6:19:19,0,26 0/1:9,2:11:45:45,0,149 0/0:6,1:7:12:0,12,143 +chr5 177547730 . T G 41.30 . AC=1;AF=0.167;AN=6;BaseQRankSum=-0.156;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.9685;MLEAC=1;MLEAF=0.167;MQ=26.35;MQ0=0;MQRankSum=0.623;QD=3.75;ReadPosRankSum=0.623;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/0:6,0:6:9:0,9,102 0/0:6,0:6:3:0,3,29 0/1:8,3:11:27:75,0,27 +chr5 177574421 rs6601221 C T 136.11 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.495;DB;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=19.69;MQ0=0;MQRankSum=1.495;QD=15.12;ReadPosRankSum=0.922;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,2:5:6:75,6,0 1/1:0,3:4:9:96,9,0 ./. ./. +chr5 177580599 . G A 61.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.796;DP=98;Dels=0.02;FS=17.389;HaplotypeScore=30.9615;MLEAC=2;MLEAF=0.250;MQ=23.50;MQ0=0;MQRankSum=-0.049;QD=1.23;ReadPosRankSum=-1.641;SB=-7.081e-01 GT:AD:DP:GQ:PL 0/0:19,0:19:15:0,15,132 0/0:27,1:28:20:0,20,389 0/1:22,4:26:52:52,0,297 0/1:20,3:23:51:51,0,273 +chr5 177649428 . A C 252.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.819;DP=113;Dels=0.03;FS=14.527;HaplotypeScore=9.7288;MLEAC=4;MLEAF=0.500;MQ=31.61;MQ0=0;MQRankSum=-3.561;QD=2.24;ReadPosRankSum=2.813;SB=-2.531e-02 GT:AD:DP:GQ:PL 0/1:20,7:27:99:134,0,421 0/1:23,4:27:24:24,0,528 0/1:29,4:33:53:53,0,631 0/1:18,5:23:84:84,0,399 +chr5 177683011 rs890805 C T 428.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.491;DB;DP=25;Dels=0.00;FS=9.328;HaplotypeScore=1.1500;MLEAC=7;MLEAF=0.875;MQ=26.71;MQ0=0;MQRankSum=2.150;QD=17.12;ReadPosRankSum=0.580;SB=-3.837e+01 GT:AD:DP:GQ:PL 1/1:1,2:3:6:70,6,0 0/1:5,4:9:65:120,0,65 1/1:3,2:5:6:75,6,0 1/1:2,6:8:18:206,18,0 +chr5 177947771 rs2546645 T C 146.17 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.736;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=36.43;MQ0=0;MQRankSum=-0.736;QD=29.23;ReadPosRankSum=0.736;SB=-3.830e+01 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,24 ./. 1/1:0,3:3:9:119,9,0 1/1:0,2:2:6:68,6,0 +chr5 178267853 . C A 48.54 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.248;DP=19;Dels=0.00;FS=3.332;HaplotypeScore=3.5660;MLEAC=5;MLEAF=0.625;MQ=18.26;MQ0=0;MQRankSum=1.422;QD=4.41;ReadPosRankSum=-0.248;SB=21.71 GT:AD:DP:GQ:PL 1/1:1,1:2:3:38,3,0 0/0:8,0:8:3:0,3,32 1/1:3,1:6:3:21,3,0 1/1:2,1:3:3:30,3,0 +chr5 178337414 . G A 60.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.023;DP=112;Dels=0.02;FS=12.255;HaplotypeScore=3.8466;MLEAC=3;MLEAF=0.375;MQ=28.23;MQ0=0;MQRankSum=-1.998;QD=0.75;ReadPosRankSum=-0.999;SB=-1.570e+00 GT:AD:DP:GQ:PL 0/1:20,4:24:56:56,0,359 0/1:27,4:31:41:41,0,406 0/0:30,1:31:63:0,63,728 0/1:21,2:24:5:5,0,332 +chr5 178373484 . T G 263.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.504;DP=155;Dels=0.00;FS=14.382;HaplotypeScore=2.1149;MLEAC=4;MLEAF=0.500;MQ=22.49;MQ0=0;MQRankSum=3.902;QD=1.70;ReadPosRankSum=1.685;SB=-1.188e-02 GT:AD:DP:GQ:PL 0/1:26,3:29:79:79,0,167 0/1:39,4:43:99:107,0,160 0/1:51,3:54:47:47,0,327 0/1:26,3:29:73:73,0,122 +chr5 178503640 rs4700780 C T 567.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.171;DB;DP=116;Dels=0.01;FS=2.096;HaplotypeScore=3.4341;MLEAC=3;MLEAF=0.375;MQ=30.03;MQ0=0;MQRankSum=0.036;QD=6.60;ReadPosRankSum=1.455;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/0:30,0:30:57:0,57,726 0/1:24,7:32:99:194,0,490 0/1:24,12:36:99:325,0,537 0/1:11,6:17:92:92,0,234 +chr5 178509565 rs1826864 C T 67.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.205;DB;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=13.57;MQ0=0;MQRankSum=-0.441;QD=3.36;ReadPosRankSum=-0.441;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,9:9:3:40,3,0 1/1:1,6:7:3:29,3,0 1/1:1,3:4:3:33,3,0 +chr5 178894246 rs11952560 G A 100.35 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.182;DB;DP=13;Dels=0.00;FS=14.150;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=15.24;MQ0=0;MQRankSum=1.611;QD=8.36;ReadPosRankSum=0.322;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,3:4:9:87,9,0 1/1:1,3:4:3:27,3,0 1/1:0,4:4:3:22,3,0 +chr5 179025789 rs72824522 G A 452.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.633;DB;DP=214;Dels=0.00;FS=4.784;HaplotypeScore=2.9814;MLEAC=1;MLEAF=0.125;MQ=33.07;MQ0=0;MQRankSum=-0.439;QD=9.85;ReadPosRankSum=1.314;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,150,1831 0/1:27,19:46:99:489,0,693 0/0:64,0:64:99:0,171,1984 0/0:49,0:49:99:0,117,1296 +chr5 179036390 . A C 78.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.979;DP=113;Dels=0.00;FS=18.128;HaplotypeScore=14.4792;MLEAC=1;MLEAF=0.125;MQ=30.49;MQ0=0;MQRankSum=-3.082;QD=2.00;ReadPosRankSum=0.480;SB=0.420 GT:AD:DP:GQ:PL 0/0:19,1:20:12:0,12,412 0/0:27,3:31:26:0,26,584 0/1:32,7:39:99:114,0,428 0/0:22,1:23:45:0,45,444 +chr5 179042010 . C A 120.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.872;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.9335;MLEAC=3;MLEAF=0.375;MQ=31.88;MQ0=0;MQRankSum=-3.174;QD=1.23;ReadPosRankSum=0.669;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,4:29:40:40,0,400 0/1:31,4:35:55:55,0,451 0/0:45,2:47:30:0,30,681 0/1:27,6:34:69:69,0,447 +chr5 179153797 rs7734102 C T 1231.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.338;DB;DP=151;Dels=0.02;FS=0.000;HaplotypeScore=2.3147;MLEAC=3;MLEAF=0.375;MQ=36.27;MQ0=0;MQRankSum=-4.173;QD=12.44;ReadPosRankSum=1.347;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:20,13:33:99:372,0,635 0/0:52,0:52:99:0,144,1942 0/1:29,18:47:99:558,0,784 0/1:5,11:16:99:345,0,131 +chr5 179225604 . A T 74.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.061;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.1305;MLEAC=3;MLEAF=0.375;MQ=29.23;MQ0=0;MQRankSum=-2.348;QD=2.20;ReadPosRankSum=-1.591;SB=-1.555e+00 GT:AD:DP:GQ:PL 0/0:13,2:15:0:0,0,235 0/1:15,4:19:47:47,0,319 0/1:12,3:15:67:67,0,176 0/0:18,0:18:24:0,24,287 +chr5 179290845 rs30386 T G 795.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.259;DB;DP=158;Dels=0.00;FS=2.543;HaplotypeScore=1.7321;MLEAC=2;MLEAF=0.250;MQ=33.29;MQ0=0;MQRankSum=-3.609;QD=10.61;ReadPosRankSum=0.474;SB=-3.410e+02 GT:AD:DP:GQ:PL 0/1:18,23:41:99:595,0,518 0/1:22,12:34:99:242,0,605 0/0:49,0:49:99:0,135,1723 0/0:34,0:34:87:0,87,1080 +chr5 179547917 rs11249669 C A 45.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.600;DB;DP=16;Dels=0.00;FS=2.881;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=19.49;MQ0=0;MQRankSum=0.600;QD=6.46;ReadPosRankSum=0.600;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,3:5:32:56,0,32 0/0:3,0:3:6:0,6,62 0/0:5,0:6:3:0,3,32 1/1:1,1:2:3:30,3,0 +chr5 179732350 rs729568 A G 36.77 . AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.00;FS=3.310;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=0;QD=18.39;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6:68,6,0 ./. ./. +chr5 179961304 . G A 109.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.394;DP=38;Dels=0.03;FS=14.799;HaplotypeScore=7.5945;MLEAC=4;MLEAF=0.500;MQ=30.92;MQ0=0;MQRankSum=0.685;QD=2.89;ReadPosRankSum=-0.591;SB=-1.509e+00 GT:AD:DP:GQ:PL 0/1:13,1:14:11:11,0,182 0/1:3,1:4:26:26,0,52 0/1:6,3:10:57:57,0,109 0/1:7,2:9:58:58,0,116 +chr5 179980527 rs11738129 A G 1651.69 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.320;DB;DP=67;Dels=0.00;FS=13.704;HaplotypeScore=0.8109;MLEAC=7;MLEAF=0.875;MQ=33.80;MQ0=0;MQRankSum=-0.643;QD=24.65;ReadPosRankSum=0.784;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,15:17:42:545,42,0 0/1:12,9:21:99:296,0,288 1/1:4,19:23:17:668,17,0 1/1:1,5:6:15:187,15,0 +chr5 180035880 . G A 93.35 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.178;DP=28;Dels=0.00;FS=13.457;HaplotypeScore=3.7542;MLEAC=4;MLEAF=0.500;MQ=18.54;MQ0=0;MQRankSum=1.812;QD=4.24;ReadPosRankSum=1.528;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:3:0,3,27 0/1:7,4:11:29:91,0,29 0/1:6,1:7:21:21,0,21 1/1:0,4:4:3:23,3,0 +chr5 180047863 rs423086 C G 494.25 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.291;DB;DP=30;Dels=0.00;FS=2.326;HaplotypeScore=3.8067;MLEAC=6;MLEAF=0.750;MQ=26.65;MQ0=0;MQRankSum=1.645;QD=16.48;ReadPosRankSum=2.507;SB=-1.305e+02 GT:AD:DP:GQ:PL 1/1:3,1:5:3:34,3,0 1/1:2,7:9:21:242,21,0 0/1:4,6:10:13:183,0,13 0/1:3,3:6:17:79,0,17 +chr5 180051118 rs728986 A T 49.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.000;DB;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.6660;MLEAC=1;MLEAF=0.125;MQ=34.23;MQ0=0;MQRankSum=-1.245;QD=7.00;ReadPosRankSum=1.624;SB=-6.912e-03 GT:AD:DP:GQ:PL 0/1:4,3:7:85:85,0,104 0/0:11,0:11:24:0,24,300 0/0:13,0:13:36:0,36,450 0/0:8,0:8:21:0,21,260 +chr5 180276695 . T G 46.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.092;DP=149;Dels=0.04;FS=49.442;HaplotypeScore=25.4060;MLEAC=2;MLEAF=0.250;MQ=27.35;MQ0=0;MQRankSum=-0.114;QD=0.79;ReadPosRankSum=-0.819;SB=-8.422e-01 GT:AD:DP:GQ:PL 0/1:29,4:33:58:58,0,476 0/0:45,1:46:59:0,59,1021 0/0:38,3:41:18:0,18,623 0/1:21,2:23:30:30,0,319 +chr5 180432220 . G C 747.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.296;DP=82;Dels=0.00;FS=3.080;HaplotypeScore=2.2165;MLEAC=4;MLEAF=0.500;MQ=32.37;MQ0=0;MQRankSum=1.643;QD=9.12;ReadPosRankSum=4.846;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,9:20:99:260,0,171 0/1:15,7:22:99:158,0,233 0/1:12,7:19:72:177,0,72 0/1:13,8:21:99:195,0,201 +chr5 180472498 rs28677846 C T 130.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.270;DB;DP=121;Dels=0.01;FS=3.416;HaplotypeScore=4.2026;MLEAC=2;MLEAF=0.250;MQ=33.14;MQ0=0;MQRankSum=-1.576;QD=1.97;ReadPosRankSum=-0.858;SB=-6.592e+01 GT:AD:DP:GQ:PL 0/0:28,0:28:72:0,72,941 0/0:27,0:27:66:0,66,840 0/1:24,6:30:99:161,0,388 0/1:31,3:35:9:9,0,642 +chr5 180625672 rs2770940 T C 1367.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.591;DB;DP=126;Dels=0.01;FS=5.180;HaplotypeScore=2.3947;MLEAC=3;MLEAF=0.375;MQ=34.24;MQ0=0;MQRankSum=-1.232;QD=14.10;ReadPosRankSum=2.057;SB=-4.940e+02 GT:AD:DP:GQ:PL 0/0:28,0:28:60:0,60,741 0/1:14,15:29:99:438,0,297 0/1:19,20:39:99:644,0,505 0/1:17,12:29:99:329,0,366 +chr5 180669136 rs17657699 C T 645.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.528;DB;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=1.6372;MLEAC=3;MLEAF=0.375;MQ=38.35;MQ0=0;MQRankSum=0.675;QD=9.64;ReadPosRankSum=0.745;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/0:32,0:32:90:0,90,1192 0/1:10,5:15:99:163,0,331 0/1:18,13:31:99:413,0,582 0/1:16,4:20:99:113,0,471 +chr5 180710476 . G T 38.06 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.129;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.3214;MLEAC=2;MLEAF=0.333;MQ=16.47;MQ0=0;MQRankSum=0.849;QD=1.52;ReadPosRankSum=-1.363;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:7,3:10:22:48,0,22 0/0:9,2:11:3:0,3,26 0/1:11,4:15:27:27,0,103 +chr6 576902 rs708038 T C 315.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.760;DB;DP=121;Dels=0.01;FS=1.630;HaplotypeScore=6.7799;MLEAC=1;MLEAF=0.125;MQ=33.90;MQ0=0;MQRankSum=-1.542;QD=11.29;ReadPosRankSum=-0.424;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:16,11:27:99:352,0,353 0/0:31,0:31:81:0,81,1028 0/0:36,0:36:93:0,93,1182 0/0:25,1:26:69:0,69,869 +chr6 1726623 rs960295 C T 1224.28 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.342;DB;DP=95;Dels=0.00;FS=51.444;HaplotypeScore=3.6068;MLEAC=6;MLEAF=0.750;MQ=27.85;MQ0=0;MQRankSum=4.498;QD=12.89;ReadPosRankSum=-1.524;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,13:31:38:401,0,38 0/1:16,4:21:80:129,0,80 1/1:6,13:19:10:438,10,0 1/1:15,9:24:27:302,27,0 +chr6 2678597 . A G 1702.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.698;DP=166;Dels=0.00;FS=119.475;HaplotypeScore=8.2014;MLEAC=4;MLEAF=0.500;MQ=33.32;MQ0=0;MQRankSum=-4.598;QD=10.26;ReadPosRankSum=5.635;SB=-1.148e-02 GT:AD:DP:GQ:PL 0/1:30,15:45:99:393,0,855 0/1:28,11:39:99:256,0,544 0/1:34,19:53:99:482,0,755 0/1:7,22:29:99:614,0,147 +chr6 2766727 rs3757094 A G 82.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.406;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.2499;MLEAC=4;MLEAF=0.500;MQ=36.86;MQ0=0;MQRankSum=0.988;QD=27.57;ReadPosRankSum=0.988;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,43 0/0:1,0:1:3:0,3,39 1/1:0,1:1:3:41,3,0 1/1:0,2:2:6:84,6,0 +chr6 2785055 rs160702 G A 42.37 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.456;DB;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.0498;MLEAC=1;MLEAF=0.125;MQ=32.44;MQ0=0;MQRankSum=0.456;QD=14.12;ReadPosRankSum=-0.274;SB=26.37 GT:AD:DP:GQ:PL 0/0:3,0:3:9:0,9,126 0/0:7,0:7:15:0,15,195 0/0:4,0:5:6:0,6,68 1/1:1,2:3:6:82,6,0 +chr6 3106328 . T A,C 117.09 . AC=3,1;AF=0.375,0.125;AN=8;BaseQRankSum=1.232;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.6910;MLEAC=3,1;MLEAF=0.375,0.125;MQ=27.22;MQ0=0;MQRankSum=-1.638;QD=1.52;ReadPosRankSum=0.907;SB=-1.187e-02 GT:AD:DP:GQ:PL 0/1:17,3,0:20:48:48,0,218,72,227,299 0/2:16,0,4:20:53:53,74,250,0,176,167 0/1:21,3,1:25:60:79,0,104,60,82,170 0/1:11,1,0:12:14:14,0,111,23,114,137 +chr6 3261979 rs11242839 G A 50.01 . AC=4;AF=1.00;AN=4;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=21.50;MQ0=0;QD=12.50;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:42,3,0 1/1:1,1:2:3:41,3,0 ./. +chr6 3298568 rs72839355 C T 163.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.093;DB;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=8.3653;MLEAC=3;MLEAF=0.375;MQ=24.46;MQ0=0;MQRankSum=0.403;QD=4.20;ReadPosRankSum=0.837;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:15:0,15,147 0/1:9,3:12:21:33,0,21 0/1:9,3:13:21:83,0,21 0/1:9,4:13:20:91,0,20 +chr6 4033065 rs6924389 A G 822.35 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.270;DB;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8800;MLEAC=5;MLEAF=0.625;MQ=31.86;MQ0=0;MQRankSum=-2.608;QD=11.92;ReadPosRankSum=-2.698;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,4:30:42:42,0,828 1/1:3,12:15:13:329,13,0 0/1:3,14:17:10:331,0,10 0/1:2,5:7:21:165,0,21 +chr6 4044297 rs853396 G T 361.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.474;DB;DP=65;Dels=0.03;FS=2.529;HaplotypeScore=1.7298;MLEAC=3;MLEAF=0.375;MQ=32.50;MQ0=0;MQRankSum=-1.223;QD=8.04;ReadPosRankSum=0.643;SB=3.99 GT:AD:DP:GQ:PL 0/0:20,0:20:39:0,39,544 1/1:2,9:13:25:283,25,0 0/1:20,4:24:90:90,0,372 0/1:4,2:6:37:37,0,147 +chr6 4119516 rs2326408 A G 1267.80 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.407;DB;DP=75;Dels=0.01;FS=17.877;HaplotypeScore=1.2159;MLEAC=6;MLEAF=0.750;MQ=31.47;MQ0=0;MQRankSum=-0.869;QD=16.90;ReadPosRankSum=3.798;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:99:159,0,272 0/1:17,9:26:99:204,0,394 1/1:1,21:22:60:713,60,0 1/1:2,8:10:24:238,24,0 +chr6 6152007 rs5980 C T 1653.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.372;DB;DP=112;Dels=0.00;FS=7.156;HaplotypeScore=0.7276;MLEAC=5;MLEAF=0.625;MQ=34.82;MQ0=0;MQRankSum=-5.168;QD=14.76;ReadPosRankSum=2.452;SB=-1.610e+02 GT:AD:DP:GQ:PL 0/1:19,12:31:99:364,0,623 1/1:1,22:23:63:768,63,0 0/1:21,11:32:99:305,0,645 0/1:16,10:26:99:262,0,421 +chr6 6167920 . A G 72.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.883;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.0857;MLEAC=3;MLEAF=0.375;MQ=20.50;MQ0=0;MQRankSum=-1.033;QD=2.77;ReadPosRankSum=3.658;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:18:18,0,62 0/0:9,2:11:6:0,6,59 0/1:10,3:13:58:58,0,125 0/1:1,4:5:24:38,0,24 +chr6 6248523 . G T 299.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.119;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.6293;MLEAC=4;MLEAF=0.500;MQ=38.60;MQ0=0;MQRankSum=-4.297;QD=2.52;ReadPosRankSum=1.151;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,5:25:99:116,0,527 0/1:30,4:34:50:50,0,662 0/1:26,6:32:99:109,0,580 0/1:24,4:28:67:67,0,664 +chr6 7226959 rs9505085 C T 79 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.504;DB;DP=83;Dels=0.05;FS=0.000;HaplotypeScore=6.6362;MLEAC=1;MLEAF=0.125;MQ=23.40;MQ0=0;MQRankSum=-0.209;QD=3.29;ReadPosRankSum=0.847;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:25,0:25:48:0,48,528 0/1:14,7:21:93:115,0,93 0/0:22,0:22:39:0,39,381 0/0:11,0:11:21:0,21,238 +chr6 7555922 . G T 32.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.781;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=4.8473;MLEAC=3;MLEAF=0.375;MQ=29.78;MQ0=0;MQRankSum=-3.366;QD=0.60;ReadPosRankSum=0.923;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:30:30,0,239 0/0:16,1:17:21:0,21,276 0/1:15,4:19:16:16,0,254 0/1:11,3:15:29:29,0,201 +chr6 7883514 . GAA G 1753.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.954;DP=129;FS=0.000;HaplotypeScore=22.0823;MLEAC=4;MLEAF=0.500;MQ=30.00;MQ0=0;MQRankSum=1.246;QD=13.59;RPA=6,4;RU=A;ReadPosRankSum=-0.588;SB=-1.730e+02;STR GT:AD:DP:GQ:PL 0/1:21,9:30:99:350,0,737 0/1:24,12:31:99:450,0,648 0/1:17,13:29:99:555,0,476 0/1:19,11:31:99:450,0,612 +chr6 7987191 . T A 57.24 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.294;DP=178;Dels=0.01;FS=35.283;HaplotypeScore=1.2562;MLEAC=3;MLEAF=0.375;MQ=17.37;MQ0=0;MQRankSum=0.438;QD=0.64;ReadPosRankSum=-2.273;SB=-2.002e+00 GT:AD:DP:GQ:PL 0/0:40,4:44:1:0,1,243 0/1:47,2:49:44:44,0,187 0/0:44,0:44:6:0,6,54 0/1:36,4:40:52:52,0,88 +chr6 7988189 rs4959464 T C 499.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.463;DB;DP=222;Dels=0.00;FS=2.091;HaplotypeScore=0.9865;MLEAC=1;MLEAF=0.125;MQ=20.82;MQ0=0;MQRankSum=3.689;QD=8.47;ReadPosRankSum=0.964;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/1:35,24:59:99:536,0,298 0/0:61,0:61:45:0,45,498 0/0:54,0:54:42:0,42,491 0/0:48,0:48:39:0,39,421 +chr6 9977735 . C T 181.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.998;DP=138;Dels=0.04;FS=34.301;HaplotypeScore=22.4923;MLEAC=4;MLEAF=0.500;MQ=22.19;MQ0=0;MQRankSum=-4.626;QD=1.32;ReadPosRankSum=3.609;SB=-1.207e-02 GT:AD:DP:GQ:PL 0/1:23,5:28:41:41,0,203 0/1:28,8:36:62:62,0,253 0/1:36,6:42:70:70,0,166 0/1:19,7:27:51:51,0,76 +chr6 10514910 rs510083 C T 392.75 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.298;DB;DP=35;Dels=0.00;FS=11.344;HaplotypeScore=5.8999;MLEAC=5;MLEAF=0.625;MQ=26.75;MQ0=0;MQRankSum=1.235;QD=11.22;ReadPosRankSum=1.311;SB=-3.371e-02 GT:AD:DP:GQ:PL 1/1:1,7:8:18:227,18,0 0/1:6,4:10:90:100,0,90 0/1:5,3:8:17:17,0,136 0/1:4,4:9:44:94,0,44 +chr6 10556659 . G C 40.91 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.116;DP=106;Dels=0.02;FS=2.298;HaplotypeScore=3.9328;MLEAC=4;MLEAF=0.500;MQ=34.01;MQ0=0;MQRankSum=-2.320;QD=0.39;ReadPosRankSum=1.335;SB=-3.990e-01 GT:AD:DP:GQ:PL 0/1:29,2:32:7:7,0,472 0/1:27,3:30:52:52,0,405 0/1:26,2:28:14:14,0,473 0/1:13,1:14:9:9,0,248 +chr6 10697517 . G T 186 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.391;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=4.2112;MLEAC=3;MLEAF=0.375;MQ=35.11;MQ0=0;MQRankSum=-3.094;QD=1.01;ReadPosRankSum=-0.906;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:49,3:52:18:0,18,1319 0/1:56,8:64:99:123,0,1541 0/1:61,7:69:17:17,0,1843 0/1:45,6:51:89:89,0,1177 +chr6 10764727 rs126405 A G 1975.59 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.525;DB;DP=115;Dels=0.01;FS=1.793;HaplotypeScore=11.3992;MLEAC=7;MLEAF=0.875;MQ=28.25;MQ0=0;MQRankSum=0.310;QD=17.18;ReadPosRankSum=1.196;SB=-9.056e+02 GT:AD:DP:GQ:PL 1/1:12,18:30:51:595,51,0 1/1:12,18:30:54:607,54,0 0/1:15,19:34:25:500,0,25 1/1:8,12:20:27:318,27,0 +chr6 10804017 . A G 51.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.956;DP=159;Dels=0.01;FS=64.903;HaplotypeScore=2.9313;MLEAC=3;MLEAF=0.375;MQ=33.07;MQ0=0;MQRankSum=-3.738;QD=0.48;ReadPosRankSum=1.159;SB=0.837 GT:AD:DP:GQ:PL 0/1:47,6:53:42:42,0,1202 0/1:36,5:41:24:24,0,921 0/0:48,3:51:59:0,59,1323 0/1:11,2:13:29:29,0,290 +chr6 10875238 rs2076257 T A 227.04 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.102;DB;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.0278;MLEAC=1;MLEAF=0.125;MQ=36.79;MQ0=0;MQRankSum=-2.309;QD=11.95;ReadPosRankSum=2.764;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,9:19:99:263,0,354 0/0:9,0:9:24:0,24,281 0/0:21,0:21:57:0,57,772 0/0:8,0:9:15:0,15,203 +chr6 10990751 rs911196 T G 538.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.525;DB;DP=114;Dels=0.00;FS=4.574;HaplotypeScore=1.1861;MLEAC=2;MLEAF=0.250;MQ=36.47;MQ0=0;MQRankSum=-0.036;QD=9.97;ReadPosRankSum=0.351;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,9:25:99:290,0,493 0/1:20,9:29:99:290,0,633 0/0:43,0:43:99:0,108,1417 0/0:17,0:17:42:0,42,525 +chr6 12123964 . A G 107.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.711;DP=181;Dels=0.00;FS=74.373;HaplotypeScore=21.5497;MLEAC=3;MLEAF=0.375;MQ=30.31;MQ0=0;MQRankSum=-6.028;QD=0.78;ReadPosRankSum=3.486;SB=-2.195e+00 GT:AD:DP:GQ:PL 0/1:37,7:45:42:42,0,1133 0/1:43,9:54:1:1,0,1224 0/0:41,3:44:40:0,40,1236 0/1:30,8:38:99:104,0,625 +chr6 12124043 . C A 272.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.526;DP=69;Dels=0.00;FS=83.918;HaplotypeScore=8.6721;MLEAC=3;MLEAF=0.375;MQ=28.78;MQ0=0;MQRankSum=0.243;QD=4.32;ReadPosRankSum=0.814;SB=-4.343e+00 GT:AD:DP:GQ:PL 0/1:11,7:19:99:172,0,178 0/1:15,3:18:26:26,0,111 0/1:20,6:26:99:117,0,148 0/0:6,0:6:12:0,12,118 +chr6 12749975 . A C 234.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.264;DP=63;Dels=0.02;FS=7.567;HaplotypeScore=1.8600;MLEAC=3;MLEAF=0.375;MQ=32.24;MQ0=0;MQRankSum=-0.289;QD=5.10;ReadPosRankSum=-1.043;SB=-2.581e-03 GT:AD:DP:GQ:PL 0/1:15,2:17:34:34,0,216 0/1:7,4:12:99:101,0,170 0/0:17,0:17:36:0,36,416 0/1:11,5:16:99:143,0,149 +chr6 14131804 rs7743206 G A 1403.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.399;DB;DP=201;Dels=0.00;FS=39.078;HaplotypeScore=3.1255;MLEAC=3;MLEAF=0.375;MQ=32.54;MQ0=0;MQRankSum=1.224;QD=9.18;ReadPosRankSum=-0.779;SB=-6.260e+02 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,111,1350 0/1:31,20:51:99:612,0,657 0/1:31,21:52:99:559,0,724 0/1:38,12:50:99:276,0,955 +chr6 15504589 rs760659 T C 101.33 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.788;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.3429;MLEAC=2;MLEAF=0.250;MQ=36.53;MQ0=0;MQRankSum=-0.182;QD=11.26;ReadPosRankSum=0.546;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,3:5:28:110,0,28 0/1:3,1:4:32:32,0,76 0/0:6,0:6:15:0,15,208 0/0:2,0:2:6:0,6,83 +chr6 15511642 . C T 422.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.867;DP=93;Dels=0.04;FS=2.619;HaplotypeScore=14.3425;MLEAC=4;MLEAF=0.500;MQ=28.39;MQ0=0;MQRankSum=-2.065;QD=4.54;ReadPosRankSum=2.789;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,6:23:99:143,0,313 0/1:16,4:20:57:57,0,375 0/1:15,7:23:99:107,0,382 0/1:14,9:23:99:158,0,223 +chr6 15524884 . C T 49.54 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.810;DP=92;Dels=0.00;FS=29.086;HaplotypeScore=12.1971;MLEAC=3;MLEAF=0.375;MQ=33.89;MQ0=0;MQRankSum=-3.088;QD=0.66;ReadPosRankSum=0.987;SB=-4.249e-01 GT:AD:DP:GQ:PL 0/1:23,2:25:9:9,0,488 0/0:17,0:17:39:0,39,502 0/1:28,4:33:34:34,0,783 0/1:13,4:17:49:49,0,368 +chr6 16145613 . G T 66.12 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.136;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4267;MLEAC=1;MLEAF=0.125;MQ=28.95;MQ0=0;MQRankSum=2.055;QD=4.41;ReadPosRankSum=-1.320;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,4:15:99:102,0,170 0/0:19,0:19:39:0,39,366 0/0:16,1:17:10:0,10,341 0/0:15,0:15:30:0,30,328 +chr6 18213834 . T G 314.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.107;DP=159;Dels=0.03;FS=4.770;HaplotypeScore=13.9451;MLEAC=4;MLEAF=0.500;MQ=29.84;MQ0=0;MQRankSum=-2.023;QD=1.98;ReadPosRankSum=2.981;SB=-3.438e-02 GT:AD:DP:GQ:PL 0/1:40,6:46:54:54,0,707 0/1:25,9:34:99:183,0,413 0/1:49,3:53:19:19,0,628 0/1:16,5:21:99:101,0,130 +chr6 18364976 . C G 53.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.973;DP=64;Dels=0.00;FS=29.362;HaplotypeScore=0.6276;MLEAC=3;MLEAF=0.375;MQ=15.72;MQ0=0;MQRankSum=2.807;QD=1.13;ReadPosRankSum=-1.748;SB=0.279 GT:AD:DP:GQ:PL 0/1:16,2:18:38:38,0,74 0/0:17,0:17:12:0,12,115 0/1:14,2:16:18:18,0,57 0/1:9,4:13:40:40,0,76 +chr6 20483230 rs4134942 A G 361.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.316;DB;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.4926;MLEAC=1;MLEAF=0.125;MQ=34.60;MQ0=0;MQRankSum=1.257;QD=13.41;ReadPosRankSum=0.829;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:38,1:39:54:0,54,1017 0/1:15,12:27:99:398,0,413 0/0:33,0:33:72:0,72,964 0/0:15,0:15:36:0,36,455 +chr6 20722750 . A G 507.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.876;DP=75;Dels=0.00;FS=103.443;HaplotypeScore=2.9718;MLEAC=4;MLEAF=0.500;MQ=25.74;MQ0=0;MQRankSum=3.483;QD=6.77;ReadPosRankSum=-0.572;SB=-2.669e+00 GT:AD:DP:GQ:PL 0/1:9,8:17:57:193,0,57 0/1:16,3:19:74:82,0,74 0/1:20,5:25:99:140,0,151 0/1:10,4:14:10:135,0,10 +chr6 22214442 . G A 45.30 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.660;DP=20;Dels=0.05;FS=3.358;HaplotypeScore=1.1247;MLEAC=5;MLEAF=0.625;MQ=26.02;MQ0=0;MQRankSum=-0.555;QD=2.66;ReadPosRankSum=0.101;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,3:6:3:34,3,0 1/1:2,1:3:3:27,3,0 0/1:5,2:7:25:26,0,25 0/0:3,0:3:3:0,3,27 +chr6 22569974 . T G 174.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.246;DP=90;Dels=0.00;FS=15.412;HaplotypeScore=1.9130;MLEAC=4;MLEAF=0.500;MQ=28.74;MQ0=0;MQRankSum=-0.247;QD=1.94;ReadPosRankSum=-0.603;SB=-4.637e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:58:58,0,375 0/1:20,4:24:19:19,0,238 0/1:16,2:18:37:37,0,246 0/1:21,7:28:99:103,0,117 +chr6 24437017 . T C 37.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.438;DP=107;Dels=0.02;FS=0.000;HaplotypeScore=13.8024;MLEAC=3;MLEAF=0.375;MQ=32.57;MQ0=0;MQRankSum=-4.304;QD=0.50;ReadPosRankSum=2.755;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,2:29:7:7,0,639 0/1:17,5:22:38:38,0,487 0/0:30,0:30:54:0,54,629 0/1:18,6:24:35:35,0,409 +chr6 24559281 rs807541 A G 101.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.196;DB;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.4773;MLEAC=1;MLEAF=0.125;MQ=34.45;MQ0=0;MQRankSum=-2.241;QD=4.64;ReadPosRankSum=-0.156;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/0:35,0:35:96:0,96,1181 0/1:16,6:22:99:138,0,316 0/0:34,0:34:90:0,90,1119 0/0:23,0:23:63:0,63,760 +chr6 24581283 rs807508 G A 796.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.945;DB;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.9839;MLEAC=2;MLEAF=0.250;MQ=40.72;MQ0=0;MQRankSum=-3.867;QD=10.91;ReadPosRankSum=0.565;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,11:40:99:327,0,1026 0/1:18,15:33:99:511,0,621 0/0:41,0:42:99:0,120,1642 0/0:21,0:21:57:0,57,780 +chr6 24828372 . G T 94.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.670;DP=66;Dels=0.05;FS=45.871;HaplotypeScore=14.9635;MLEAC=3;MLEAF=0.375;MQ=22.96;MQ0=0;MQRankSum=-0.626;QD=2.15;ReadPosRankSum=1.044;SB=-1.070e+00 GT:AD:DP:GQ:PL 0/1:9,5:14:46:46,0,48 0/1:14,3:17:51:51,0,102 0/0:18,3:21:8:0,8,236 0/1:9,2:11:40:40,0,101 +chr6 25109858 . T C 151.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.609;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.0007;MLEAC=3;MLEAF=0.375;MQ=23.62;MQ0=0;MQRankSum=2.370;QD=4.11;ReadPosRankSum=-1.603;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:47:47,0,68 0/1:12,2:14:46:46,0,103 0/1:7,4:11:74:101,0,74 0/0:5,0:5:6:0,6,49 +chr6 25280119 rs6914799 C A,T 196.57 . AC=1,4;AF=0.125,0.500;AN=8;BaseQRankSum=-2.586;DB;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=26.0559;MLEAC=1,4;MLEAF=0.125,0.500;MQ=24.89;MQ0=0;MQRankSum=-2.586;QD=1.57;ReadPosRankSum=0.272;SB=-6.151e+01 GT:AD:DP:GQ:PL 0/2:19,2,2:24:28:30,28,260,0,212,229 1/2:13,6,9:28:38:151,38,50,91,0,106 0/2:25,1,5:31:28:33,28,418,0,358,384 0/2:29,1,9:40:61:61,69,508,0,410,430 +chr6 25452222 . CT C 221.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.923;DP=55;FS=0.000;HaplotypeScore=20.2265;MLEAC=3;MLEAF=0.375;MQ=21.39;MQ0=0;MQRankSum=-1.569;QD=5.15;ReadPosRankSum=-0.585;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:4,7:7:0:120,0,0 0/1:15,4:12:99:128,0,134 0/1:11,1:5:23:23,0,121 0/0:11,1:3:5:0,5,24 +chr6 25691362 rs17492659 C T 438.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.706;DB;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=2.4575;MLEAC=1;MLEAF=0.125;MQ=38.05;MQ0=0;MQRankSum=1.872;QD=12.19;ReadPosRankSum=-0.183;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,14:36:99:475,0,719 0/0:37,0:37:99:0,111,1475 0/0:46,0:46:99:0,138,1865 0/0:23,0:23:66:0,66,828 +chr6 25773809 rs2275906 A G 1444.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.153;DB;DP=172;Dels=0.00;FS=2.156;HaplotypeScore=0.9956;MLEAC=3;MLEAF=0.375;MQ=38.40;MQ0=0;MQRankSum=-2.540;QD=11.75;ReadPosRankSum=0.381;SB=-6.450e+02 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,138,1847 0/1:32,17:49:99:521,0,1000 0/1:29,19:48:99:624,0,961 0/1:14,12:26:99:343,0,347 +chr6 25913624 . A C 540.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.848;DP=165;Dels=0.00;FS=88.830;HaplotypeScore=4.8733;MLEAC=4;MLEAF=0.500;MQ=31.41;MQ0=0;MQRankSum=-3.832;QD=3.28;ReadPosRankSum=2.551;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:38,10:48:99:177,0,727 0/1:38,8:46:99:128,0,741 0/1:34,7:45:99:100,0,711 0/1:16,10:26:99:178,0,265 +chr6 26123888 . GCCA G 93.05 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.231;DP=110;FS=0.000;HaplotypeScore=6.5987;MLEAC=2;MLEAF=0.250;MQ=14.24;MQ0=0;MQRankSum=0.046;QD=1.48;ReadPosRankSum=-1.713;SB=0.180 GT:AD:DP:GQ:PL 0/0:26,0:4:12:0,12,254 0/1:27,2:6:57:57,0,204 0/1:30,4:6:86:86,0,154 0/0:21,0:3:9:0,9,137 +chr6 26124722 . A G 45.33 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.469;DP=121;Dels=0.00;FS=55.456;HaplotypeScore=6.9930;MLEAC=4;MLEAF=0.500;MQ=14.90;MQ0=0;MQRankSum=2.841;QD=0.37;ReadPosRankSum=-0.982;SB=-2.479e-02 GT:AD:DP:GQ:PL 0/1:27,1:28:7:7,0,160 0/1:27,1:28:27:27,0,32 0/1:38,3:41:18:18,0,192 0/1:21,3:24:25:35,0,25 +chr6 26234619 . A G 31.70 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.346;DP=112;Dels=0.01;FS=15.534;HaplotypeScore=4.3469;MLEAC=2;MLEAF=0.250;MQ=32.89;MQ0=0;MQRankSum=0.619;QD=0.45;ReadPosRankSum=-0.493;SB=31.57 GT:AD:DP:GQ:PL 0/0:19,0:19:9:0,9,98 0/1:32,3:35:30:30,0,486 0/1:29,3:34:40:40,0,404 0/0:21,0:23:21:0,21,228 +chr6 26250466 . T G 97.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.888;DP=153;Dels=0.00;FS=11.803;HaplotypeScore=8.3855;MLEAC=3;MLEAF=0.375;MQ=14.52;MQ0=0;MQRankSum=3.601;QD=0.89;ReadPosRankSum=-1.564;SB=0.050 GT:AD:DP:GQ:PL 0/0:43,1:44:12:0,12,128 0/1:39,3:42:66:66,0,122 0/1:32,1:33:21:21,0,81 0/1:31,3:34:41:53,0,41 +chr6 26250763 . T A 38.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.071;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=9.2720;MLEAC=1;MLEAF=0.125;MQ=19.66;MQ0=0;MQRankSum=2.409;QD=1.27;ReadPosRankSum=-1.124;SB=-2.677e+01 GT:AD:DP:GQ:PL 0/0:29,0:29:12:0,12,125 0/0:35,0:35:24:0,24,216 0/0:42,0:42:24:0,24,254 0/1:26,4:30:74:74,0,122 +chr6 26271505 . C T 34.69 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.142;DP=113;Dels=0.00;FS=13.865;HaplotypeScore=8.8995;MLEAC=3;MLEAF=0.375;MQ=17.43;MQ0=0;MQRankSum=2.418;QD=0.43;ReadPosRankSum=1.002;SB=-1.947e+00 GT:AD:DP:GQ:PL 0/1:28,3:31:37:37,0,74 0/1:22,1:23:2:2,0,146 0/0:32,0:32:30:0,30,264 0/1:24,3:27:36:36,0,94 +chr6 26370605 rs9379860 T C 81.32 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.207;DB;DP=191;Dels=0.01;FS=5.111;HaplotypeScore=3.4364;MLEAC=3;MLEAF=0.500;MQ=9.27;MQ0=0;MQRankSum=0.288;QD=0.59;ReadPosRankSum=0.806;SB=-1.216e+00 GT:AD:DP:GQ:PL 0/1:29,17:46:38:38,0,38 ./. 0/1:32,15:47:19:19,0,40 0/1:27,17:45:51:63,0,51 +chr6 26423317 rs7745238 G A 127.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.366;DB;DP=246;Dels=0.00;FS=13.516;HaplotypeScore=7.1376;MLEAC=3;MLEAF=0.375;MQ=17.00;MQ0=0;MQRankSum=-1.059;QD=0.69;ReadPosRankSum=1.307;SB=-4.049e+00 GT:AD:DP:GQ:PL 0/1:33,25:58:37:37,0,330 0/0:62,0:62:42:0,42,439 0/1:41,23:64:19:19,0,295 0/1:42,20:62:99:115,0,279 +chr6 26430981 rs2893848 A G 256.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.892;DB;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0170;MLEAC=3;MLEAF=0.375;MQ=26.59;MQ0=0;MQRankSum=0.618;QD=4.59;ReadPosRankSum=0.019;SB=-8.501e+01 GT:AD:DP:GQ:PL 0/1:10,4:14:99:125,0,147 0/0:35,0:37:51:0,51,615 0/1:15,6:22:99:100,0,147 0/1:16,4:20:75:75,0,185 +chr6 26449050 . T A 56.96 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.094;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.0787;MLEAC=4;MLEAF=0.500;MQ=30.95;MQ0=0;MQRankSum=-1.152;QD=0.59;ReadPosRankSum=-2.027;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,3:30:38:38,0,329 0/1:27,2:29:11:11,0,571 0/1:20,2:22:34:34,0,302 0/1:13,1:15:16:16,0,110 +chr6 26505135 rs3736780 C T 2067.72 . AC=7;AF=0.875;AN=8;BaseQRankSum=4.265;DB;DP=101;Dels=0.00;FS=8.501;HaplotypeScore=3.2531;MLEAC=7;MLEAF=0.875;MQ=32.85;MQ0=0;MQRankSum=0.883;QD=20.47;ReadPosRankSum=1.463;SB=-5.192e+02 GT:AD:DP:GQ:PL 0/1:16,13:29:99:383,0,479 1/1:7,22:29:12:657,12,0 1/1:6,19:25:33:692,33,0 1/1:7,11:18:33:380,33,0 +chr6 26598188 rs3800303 A G 1258.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.467;DB;DP=91;Dels=0.01;FS=1.796;HaplotypeScore=2.1005;MLEAC=4;MLEAF=0.500;MQ=35.57;MQ0=0;MQRankSum=-0.481;QD=18.78;ReadPosRankSum=1.676;SB=-5.712e+02 GT:AD:DP:GQ:PL 0/0:24,0:24:63:0,63,862 1/1:6,21:27:41:764,41,0 0/1:10,9:20:99:295,0,290 0/1:11,8:19:99:248,0,172 +chr6 26865256 rs180981111 T G 1138.20 . AC=6;AF=0.750;AN=8;BaseQRankSum=4.212;DB;DP=104;Dels=0.00;FS=19.679;HaplotypeScore=3.8557;MLEAC=6;MLEAF=0.750;MQ=19.21;MQ0=0;MQRankSum=3.518;QD=10.94;ReadPosRankSum=2.835;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:5,16:21:5:265,5,0 0/1:11,17:28:31:302,0,31 1/1:7,16:23:36:344,36,0 0/1:15,16:32:7:271,0,7 +chr6 26867031 rs192512511 A G 1008.34 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.141;DB;DP=251;Dels=0.00;FS=8.142;HaplotypeScore=0.8723;MLEAC=5;MLEAF=0.625;MQ=13.61;MQ0=0;MQRankSum=9.527;QD=4.02;ReadPosRankSum=1.376;SB=-3.078e+02 GT:AD:DP:GQ:PL 0/1:32,23:55:99:348,0,116 0/1:48,20:68:99:301,0,125 1/1:53,13:66:6:250,6,0 0/1:43,19:62:99:153,0,125 +chr6 27215716 rs185312781 C T 31.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.581;DB;DP=77;Dels=0.01;FS=44.407;HaplotypeScore=13.7962;MLEAC=3;MLEAF=0.375;MQ=23.56;MQ0=0;MQRankSum=-0.127;QD=0.54;ReadPosRankSum=-0.867;SB=-1.128e+00 GT:AD:DP:GQ:PL 0/1:13,1:14:12:12,0,167 0/0:15,2:17:4:0,4,282 0/1:13,2:15:39:39,0,166 0/1:24,5:30:22:22,0,288 +chr6 27277084 . C T 59.14 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.050;DP=91;Dels=0.00;FS=27.049;HaplotypeScore=10.5493;MLEAC=4;MLEAF=0.500;MQ=29.28;MQ0=0;MQRankSum=-0.779;QD=0.65;ReadPosRankSum=-0.429;SB=-5.439e-01 GT:AD:DP:GQ:PL 0/1:17,3:20:30:30,0,281 0/1:24,3:27:39:39,0,407 0/1:20,3:24:8:8,0,357 0/1:17,2:20:24:24,0,320 +chr6 27705522 . G A 473.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.315;DP=194;Dels=0.01;FS=187.365;HaplotypeScore=12.9577;MLEAC=4;MLEAF=0.500;MQ=20.73;MQ0=0;MQRankSum=4.225;QD=2.44;ReadPosRankSum=2.985;SB=0.324 GT:AD:DP:GQ:PL 0/1:36,9:45:99:163,0,334 0/1:57,6:63:78:78,0,492 0/1:46,10:56:99:207,0,456 0/1:24,5:29:68:68,0,212 +chr6 27858418 . C A 79.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.070;DP=114;Dels=0.01;FS=1.341;HaplotypeScore=9.5499;MLEAC=2;MLEAF=0.250;MQ=21.17;MQ0=0;MQRankSum=1.722;QD=1.46;ReadPosRankSum=-1.522;SB=-3.742e+01 GT:AD:DP:GQ:PL 0/1:23,3:26:54:54,0,171 0/0:28,1:29:2:0,2,247 0/0:30,0:30:39:0,39,400 0/1:23,5:28:65:65,0,204 +chr6 28097193 rs4713140 G A 36.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.877;DB;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.1677;MLEAC=1;MLEAF=0.125;MQ=35.65;MQ0=0;MQRankSum=-2.492;QD=1.64;ReadPosRankSum=-1.086;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/0:24,1:25:36:0,36,867 0/1:17,5:22:72:72,0,550 0/0:26,0:26:75:0,75,996 0/0:11,0:11:18:0,18,248 +chr6 28120313 . A C 38.06 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.922;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.3289;MLEAC=2;MLEAF=0.333;MQ=25.42;MQ0=0;MQRankSum=-0.421;QD=5.44;ReadPosRankSum=2.017;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,1:3:25:25,0,36 0/1:1,3:4:29:50,0,29 0/0:1,0:1:3:0,3,23 ./. +chr6 28134582 rs16893735 C T 114.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.053;DB;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9732;MLEAC=1;MLEAF=0.125;MQ=30.60;MQ0=0;MQRankSum=0.741;QD=7.19;ReadPosRankSum=1.781;SB=-9.967e-03 GT:AD:DP:GQ:PL 0/0:18,0:18:42:0,42,464 0/1:10,6:16:99:151,0,235 0/0:13,0:13:33:0,33,377 0/0:12,0:12:36:0,36,433 +chr6 28227287 . C A 108.95 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.110;DP=93;Dels=0.01;FS=12.294;HaplotypeScore=15.7524;MLEAC=4;MLEAF=0.500;MQ=26.64;MQ0=0;MQRankSum=2.309;QD=1.17;ReadPosRankSum=-2.502;SB=-1.002e-01 GT:AD:DP:GQ:PL 0/1:25,2:27:16:16,0,406 0/1:19,3:22:55:55,0,299 0/1:19,4:23:69:69,0,400 0/1:17,2:20:11:11,0,181 +chr6 28350390 . A C 167.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.325;DP=151;Dels=0.00;FS=25.452;HaplotypeScore=1.9908;MLEAC=4;MLEAF=0.500;MQ=34.17;MQ0=0;MQRankSum=-4.249;QD=1.11;ReadPosRankSum=0.475;SB=-3.540e-01 GT:AD:DP:GQ:PL 0/1:42,6:48:99:113,0,782 0/1:40,5:45:41:41,0,920 0/1:41,4:45:10:10,0,832 0/1:11,2:13:46:46,0,63 +chr6 28499587 . T A 32.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-7.795;DP=353;Dels=0.00;FS=213.575;HaplotypeScore=16.2521;MLEAC=1;MLEAF=0.125;MQ=33.48;MQ0=0;MQRankSum=-9.414;QD=0.45;ReadPosRankSum=2.722;SB=-6.199e+00 GT:AD:DP:GQ:PL 0/0:79,8:87:89:0,89,2427 0/0:82,13:95:99:0,135,2404 0/0:89,8:97:99:0,123,2729 0/1:57,16:73:69:69,0,1605 +chr6 28501822 . A C 93.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.081;DP=179;Dels=0.01;FS=102.208;HaplotypeScore=7.9188;MLEAC=3;MLEAF=0.375;MQ=31.51;MQ0=0;MQRankSum=-2.363;QD=0.77;ReadPosRankSum=1.811;SB=-1.965e+00 GT:AD:DP:GQ:PL 0/1:43,4:47:29:29,0,811 0/0:49,4:56:5:0,5,913 0/1:39,6:46:99:101,0,601 0/1:26,2:29:3:3,0,521 +chr6 28879411 . C G 73.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.989;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=6.8202;MLEAC=4;MLEAF=0.500;MQ=24.51;MQ0=0;MQRankSum=-0.640;QD=1.13;ReadPosRankSum=1.997;SB=-1.200e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:35:35,0,205 0/1:16,2:19:24:24,0,35 0/1:18,2:20:40:40,0,150 0/1:6,1:8:17:17,0,34 +chr6 28938084 . T C 68.33 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.870;DP=133;Dels=0.02;FS=2.342;HaplotypeScore=2.3556;MLEAC=4;MLEAF=0.667;MQ=10.69;MQ0=0;MQRankSum=3.319;QD=0.66;ReadPosRankSum=-1.921;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,3:28:59:59,0,141 1/1:38,1:39:3:23,3,0 0/1:35,1:36:20:25,0,20 ./. +chr6 29713430 . C T 59.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.022;DP=206;Dels=0.00;FS=9.800;HaplotypeScore=4.2317;MLEAC=3;MLEAF=0.375;MQ=13.48;MQ0=0;MQRankSum=3.319;QD=0.38;ReadPosRankSum=-2.133;SB=-2.359e-01 GT:AD:DP:GQ:PL 0/1:43,2:45:21:52,0,21 0/1:46,2:48:11:11,0,138 0/1:63,2:65:39:39,0,78 0/0:47,1:48:9:0,9,100 +chr6 29759872 . C A 254.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.123;DP=118;Dels=0.00;FS=36.900;HaplotypeScore=3.4036;MLEAC=3;MLEAF=0.375;MQ=18.80;MQ0=0;MQRankSum=3.154;QD=2.65;ReadPosRankSum=1.350;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,6:29:99:105,0,134 0/0:21,1:22:3:0,3,22 0/1:32,7:39:99:105,0,197 0/1:24,4:28:51:86,0,51 +chr6 29785132 . T C 38.38 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.731;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=22.90;MQ0=0;MQRankSum=2.166;QD=4.26;ReadPosRankSum=0.296;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,1:4:3:25,3,0 0/0:2,0:2:3:0,3,37 ./. 0/1:3,2:5:13:51,0,13 +chr6 29917673 rs114103313 G A 102.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.654;DB;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.125;MQ=32.12;MQ0=0;MQRankSum=-0.900;QD=10.20;ReadPosRankSum=1.022;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,5:10:99:138,0,141 0/0:11,0:11:21:0,21,256 0/0:15,0:15:30:0,30,383 0/0:8,0:9:18:0,18,221 +chr6 29974726 . T C 35.99 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.681;DP=61;Dels=0.00;FS=24.881;HaplotypeScore=1.6267;MLEAC=4;MLEAF=0.500;MQ=22.59;MQ0=0;MQRankSum=1.726;QD=0.59;ReadPosRankSum=0.154;SB=-5.561e-01 GT:AD:DP:GQ:PL 0/1:11,2:13:38:38,0,94 0/1:13,1:14:19:19,0,93 0/1:20,1:21:4:4,0,231 0/1:11,2:13:16:16,0,75 +chr6 29974822 . C G 68.98 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.655;DP=57;Dels=0.00;FS=37.865;HaplotypeScore=0.8245;MLEAC=4;MLEAF=0.500;MQ=16.00;MQ0=0;MQRankSum=2.187;QD=1.77;ReadPosRankSum=1.791;SB=0.941 GT:AD:DP:GQ:PL 1/1:6,4:10:9:91,9,0 0/1:13,1:14:16:16,0,65 0/0:16,2:18:18:0,18,151 0/1:13,2:15:8:8,0,80 +chr6 30037066 . G A 227.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.094;DP=103;Dels=0.00;FS=65.673;HaplotypeScore=6.6253;MLEAC=3;MLEAF=0.375;MQ=20.59;MQ0=0;MQRankSum=2.362;QD=2.88;ReadPosRankSum=1.692;SB=1.66 GT:AD:DP:GQ:PL 0/1:23,9:32:99:197,0,127 0/0:22,2:24:11:0,11,259 0/1:23,5:28:38:38,0,216 0/1:15,4:19:35:35,0,216 +chr6 30136012 . G T 108.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.147;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=2.6859;MLEAC=2;MLEAF=0.250;MQ=33.02;MQ0=0;MQRankSum=-1.569;QD=4.16;ReadPosRankSum=0.834;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,4:15:75:75,0,220 0/0:8,0:8:9:0,9,116 0/1:7,3:10:49:74,0,49 0/0:10,0:10:12:0,12,147 +chr6 30154928 rs116382705 G A 48.01 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.358;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=19.04;MQ0=0;MQRankSum=0.358;QD=12.00;ReadPosRankSum=0.358;SB=-2.876e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:59,6,0 1/1:1,1:2:3:28,3,0 0/0:1,0:1:3:0,3,32 ./. +chr6 30297114 . T G 456.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.598;DP=243;Dels=0.01;FS=128.645;HaplotypeScore=21.4049;MLEAC=4;MLEAF=0.500;MQ=29.19;MQ0=0;MQRankSum=-0.104;QD=1.88;ReadPosRankSum=-0.658;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:43,9:52:99:181,0,761 0/1:54,12:69:99:119,0,943 0/1:59,11:71:99:134,0,1022 0/1:42,6:49:65:65,0,708 +chr6 30457329 . T C 53.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.505;DP=130;Dels=0.00;FS=26.687;HaplotypeScore=1.6814;MLEAC=2;MLEAF=0.250;MQ=35.69;MQ0=0;MQRankSum=-2.484;QD=0.78;ReadPosRankSum=-0.708;SB=0.623 GT:AD:DP:GQ:PL 0/1:26,4:30:57:57,0,566 0/0:33,2:35:28:0,28,641 0/1:34,5:39:38:38,0,804 0/0:26,0:26:57:0,57,761 +chr6 30647065 . A C 198.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.091;DP=51;Dels=0.02;FS=39.717;HaplotypeScore=2.8993;MLEAC=3;MLEAF=0.375;MQ=21.05;MQ0=0;MQRankSum=1.256;QD=4.74;ReadPosRankSum=1.367;SB=-1.980e+00 GT:AD:DP:GQ:PL 0/1:8,5:13:80:105,0,80 0/1:11,4:15:41:84,0,41 0/1:9,4:13:38:52,0,38 0/0:6,3:9:6:0,6,51 +chr6 30709428 . C T 395.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.849;DP=211;Dels=0.03;FS=53.806;HaplotypeScore=24.6282;MLEAC=4;MLEAF=0.500;MQ=28.99;MQ0=0;MQRankSum=-4.658;QD=1.87;ReadPosRankSum=0.272;SB=-1.282e-02 GT:AD:DP:GQ:PL 0/1:44,10:54:99:99,0,796 0/1:50,6:56:77:77,0,675 0/1:41,13:54:99:227,0,595 0/1:34,7:41:35:35,0,565 +chr6 30782436 . C G 96.42 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.002;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4164;MLEAC=3;MLEAF=0.375;MQ=28.92;MQ0=0;MQRankSum=-1.820;QD=1.79;ReadPosRankSum=-1.197;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,2:19:27:0,27,295 0/1:14,5:19:99:101,0,215 0/1:21,3:24:28:28,0,378 0/1:10,1:11:10:10,0,188 +chr6 30858857 rs1049622 C T 282.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.049;DB;DP=149;Dels=0.00;FS=2.879;HaplotypeScore=7.1167;MLEAC=1;MLEAF=0.125;MQ=37.24;MQ0=0;MQRankSum=-0.190;QD=9.76;ReadPosRankSum=-1.701;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:19,10:29:99:319,0,531 0/0:40,0:40:99:0,114,1449 0/0:36,0:36:99:0,105,1373 0/0:44,0:44:99:0,120,1478 +chr6 30859799 . G T 60.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.096;DP=140;Dels=0.00;FS=194.467;HaplotypeScore=7.9871;MLEAC=2;MLEAF=0.250;MQ=25.45;MQ0=0;MQRankSum=-5.412;QD=0.84;ReadPosRankSum=0.531;SB=-4.806e+00 GT:AD:DP:GQ:PL 0/1:21,7:28:45:45,0,393 0/0:28,5:33:54:0,54,609 0/1:34,10:44:57:57,0,774 0/0:31,4:35:46:0,46,694 +chr6 30877760 rs114336365 A C 466.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.829;DB;DP=231;Dels=0.00;FS=0.913;HaplotypeScore=3.1095;MLEAC=1;MLEAF=0.125;MQ=37.54;MQ0=0;MQRankSum=-3.051;QD=8.98;ReadPosRankSum=-0.070;SB=-2.290e+02 GT:AD:DP:GQ:PL 0/1:34,18:52:99:503,0,979 0/0:52,0:52:99:0,147,1911 0/0:73,0:73:99:0,211,2730 0/0:54,0:54:99:0,150,1847 +chr6 30882634 rs116366017 C T 1172.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.881;DB;DP=121;Dels=0.00;FS=30.225;HaplotypeScore=3.5286;MLEAC=4;MLEAF=0.500;MQ=34.28;MQ0=0;MQRankSum=-2.387;QD=9.69;ReadPosRankSum=-0.221;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,12:32:99:344,0,519 0/1:18,11:29:99:318,0,528 0/1:19,13:32:99:385,0,517 0/1:22,6:28:99:168,0,541 +chr6 30887635 . A G 39.22 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.131;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.3145;MLEAC=2;MLEAF=0.250;MQ=26.27;MQ0=0;MQRankSum=-1.878;QD=0.50;ReadPosRankSum=1.358;SB=-1.333e-01 GT:AD:DP:GQ:PL 0/0:34,3:37:13:0,13,389 0/1:37,3:40:17:17,0,396 0/0:44,3:47:3:0,3,768 0/1:31,7:38:62:62,0,541 +chr6 30893226 rs114281734 C G 388.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.745;DB;DP=47;Dels=0.02;FS=6.637;HaplotypeScore=1.6995;MLEAC=4;MLEAF=0.500;MQ=27.93;MQ0=0;MQRankSum=-2.209;QD=8.27;ReadPosRankSum=-0.771;SB=-1.920e+02 GT:AD:DP:GQ:PL 0/1:7,2:9:47:47,0,140 0/1:8,6:14:99:159,0,114 0/1:6,4:10:99:111,0,158 0/1:6,7:13:99:114,0,162 +chr6 30893618 . A C 71.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.728;DP=111;Dels=0.00;FS=9.459;HaplotypeScore=4.6073;MLEAC=3;MLEAF=0.375;MQ=32.35;MQ0=0;MQRankSum=-2.975;QD=0.83;ReadPosRankSum=3.316;SB=0.062 GT:AD:DP:GQ:PL 0/0:23,2:25:30:0,30,654 0/1:25,3:28:35:35,0,435 0/1:26,4:30:37:37,0,579 0/1:24,4:28:43:43,0,455 +chr6 30919453 rs188928476 T G 37.35 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.700;DB;DP=169;Dels=0.02;FS=12.645;HaplotypeScore=30.5466;MLEAC=4;MLEAF=0.500;MQ=17.46;MQ0=0;MQRankSum=2.821;QD=0.22;ReadPosRankSum=-0.312;SB=-1.280e-02 GT:AD:DP:GQ:PL 0/1:29,2:35:9:9,0,140 0/1:34,3:38:4:4,0,175 0/1:39,2:46:31:31,0,155 0/1:43,2:47:34:34,0,203 +chr6 30920890 rs115695210 G A 1220.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.608;DB;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.0965;MLEAC=4;MLEAF=0.500;MQ=34.60;MQ0=0;MQRankSum=-2.437;QD=12.45;ReadPosRankSum=2.191;SB=-2.250e+02 GT:AD:DP:GQ:PL 0/1:11,9:20:99:238,0,354 0/1:18,13:31:99:358,0,451 0/1:11,17:28:99:560,0,292 0/1:14,5:19:99:107,0,406 +chr6 31113106 rs112857996 A G 1544.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.459;DB;DP=93;Dels=0.00;FS=2.790;HaplotypeScore=1.1047;MLEAC=5;MLEAF=0.625;MQ=33.00;MQ0=0;MQRankSum=1.053;QD=16.61;ReadPosRankSum=-1.061;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:69:866,69,0 0/1:15,9:24:99:280,0,248 0/1:11,10:21:99:300,0,260 0/1:18,6:24:99:144,0,619 +chr6 31113326 rs116584864 G A 167.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.005;DB;DP=91;Dels=0.00;FS=2.755;HaplotypeScore=0.3919;MLEAC=1;MLEAF=0.125;MQ=32.36;MQ0=0;MQRankSum=-0.678;QD=8.84;ReadPosRankSum=0.141;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/0:24,0:24:72:0,72,899 0/1:12,7:19:99:204,0,304 0/0:26,0:26:69:0,69,833 0/0:22,0:22:63:0,63,740 +chr6 31122126 rs116455062 G C 1315.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.700;DB;DP=104;Dels=0.00;FS=3.052;HaplotypeScore=1.0364;MLEAC=4;MLEAF=0.500;MQ=33.78;MQ0=0;MQRankSum=-4.856;QD=17.78;ReadPosRankSum=1.202;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:69:842,69,0 0/0:30,0:30:90:0,90,1165 0/1:19,11:30:99:269,0,613 0/1:5,12:17:99:253,0,99 +chr6 31122400 . T C 143.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.602;DP=158;Dels=0.01;FS=24.464;HaplotypeScore=9.5596;MLEAC=3;MLEAF=0.375;MQ=27.29;MQ0=0;MQRankSum=-3.000;QD=1.92;ReadPosRankSum=1.732;SB=-9.936e-01 GT:AD:DP:GQ:PL 0/0:37,3:40:20:0,20,773 0/1:32,7:39:99:109,0,399 0/0:39,3:42:0:0,0,676 0/1:24,11:35:74:74,0,450 +chr6 31130330 . T A 73.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.752;DP=88;Dels=0.00;FS=7.393;HaplotypeScore=7.8126;MLEAC=2;MLEAF=0.250;MQ=22.98;MQ0=0;MQRankSum=1.340;QD=1.78;ReadPosRankSum=-1.489;SB=-5.660e+00 GT:AD:DP:GQ:PL 0/1:17,1:18:2:2,0,234 0/0:21,1:22:0:0,0,169 0/0:25,0:25:42:0,42,436 0/1:18,5:23:99:106,0,169 +chr6 31133943 rs115857083 C A 262.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.010;DB;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.6367;MLEAC=4;MLEAF=0.500;MQ=32.89;MQ0=0;MQRankSum=1.588;QD=11.95;ReadPosRankSum=-1.973;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:71:71,0,98 0/1:2,4:6:9:132,0,9 0/1:4,1:5:36:38,0,36 0/1:4,2:6:54:64,0,54 +chr6 31170713 rs114945285 T C 696.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.144;DB;DP=84;Dels=0.02;FS=2.621;HaplotypeScore=2.2276;MLEAC=4;MLEAF=0.500;MQ=31.54;MQ0=0;MQRankSum=-2.097;QD=12.22;ReadPosRankSum=-1.319;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,18:23:51:583,51,0 0/0:27,0:27:75:0,75,930 0/1:13,5:19:79:79,0,451 0/1:10,3:13:83:83,0,187 +chr6 31237048 rs115762318 A G 1833.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.854;DB;DP=120;Dels=0.01;FS=8.680;HaplotypeScore=0.6754;MLEAC=5;MLEAF=0.625;MQ=25.86;MQ0=0;MQRankSum=6.546;QD=15.28;ReadPosRankSum=3.157;SB=-9.057e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:60:687,60,0 0/1:19,15:34:99:445,0,137 0/1:22,14:36:54:399,0,54 0/1:16,11:27:83:348,0,83 +chr6 31244654 rs115374677 A G 472.61 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.152;DB;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.1390;MLEAC=5;MLEAF=0.625;MQ=28.52;MQ0=0;MQRankSum=0.149;QD=11.25;ReadPosRankSum=-0.419;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,10:11:24:293,24,0 0/1:7,5:12:79:118,0,79 0/1:10,4:14:83:83,0,276 0/1:4,1:5:24:24,0,64 +chr6 31245309 rs112946729 C A 405.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.559;DB;DP=140;Dels=0.01;FS=19.586;HaplotypeScore=3.5863;MLEAC=2;MLEAF=0.250;MQ=19.85;MQ0=0;MQRankSum=1.929;QD=5.20;ReadPosRankSum=0.531;SB=-1.223e+02 GT:AD:DP:GQ:PL 0/1:22,18:40:99:335,0,119 0/1:25,11:36:99:112,0,120 0/0:35,0:35:51:0,51,511 0/0:27,0:27:27:0,27,227 +chr6 31322175 rs141726688 C T 478.63 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.066;DB;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.2167;MLEAC=5;MLEAF=0.625;MQ=21.28;MQ0=0;MQRankSum=1.276;QD=7.60;ReadPosRankSum=-0.095;SB=-2.399e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:27:287,27,0 0/1:10,7:17:20:101,0,20 0/1:7,6:13:30:30,0,72 0/1:11,5:16:34:106,0,34 +chr6 31322487 rs3819294 G A 232.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.620;DB;DP=119;Dels=0.00;FS=2.246;HaplotypeScore=1.4615;MLEAC=1;MLEAF=0.125;MQ=26.46;MQ0=0;MQRankSum=1.060;QD=8.96;ReadPosRankSum=1.994;SB=-1.155e-02 GT:AD:DP:GQ:PL 0/1:15,11:26:99:269,0,265 0/0:32,0:32:45:0,45,521 0/0:37,0:37:51:0,51,546 0/0:24,0:24:48:0,48,551 +chr6 31323065 rs17881225 G C 37.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.044;DB;DP=103;Dels=0.00;FS=1.705;HaplotypeScore=5.6108;MLEAC=1;MLEAF=0.125;MQ=19.67;MQ0=0;MQRankSum=-0.604;QD=1.90;ReadPosRankSum=0.324;SB=-1.800e+01 GT:AD:DP:GQ:PL 0/1:12,8:20:74:74,0,135 0/0:33,0:33:66:0,66,637 0/0:26,0:26:36:0,36,344 0/0:24,0:24:39:0,39,382 +chr6 31334601 rs114949789 T C 119.46 . AC=3;AF=0.375;AN=8;BaseQRankSum=5.979;DB;DP=178;Dels=0.00;FS=5.638;HaplotypeScore=1.6282;MLEAC=3;MLEAF=0.375;MQ=14.64;MQ0=0;MQRankSum=-5.577;QD=1.49;ReadPosRankSum=3.166;SB=-7.875e+01 GT:AD:DP:GQ:PL 1/1:7,30:37:12:133,12,0 0/0:31,15:46:21:0,21,204 0/0:32,20:52:5:0,5,356 0/1:29,14:43:33:33,0,220 +chr6 31348321 rs115228818 G A 94.76 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.300;DB;DP=12;Dels=0.00;FS=11.181;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=16.58;MQ0=0;MQRankSum=1.754;QD=11.85;ReadPosRankSum=-0.550;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,3:5:9:104,9,0 ./. 1/1:2,1:3:3:25,3,0 ./. +chr6 31348403 rs114624174 G T 52.02 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.708;DB;DP=15;Dels=0.00;FS=7.160;HaplotypeScore=2.4680;MLEAC=3;MLEAF=0.750;MQ=16.59;MQ0=0;MQRankSum=1.708;QD=4.73;ReadPosRankSum=-0.715;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:23:23,0,34 ./. 1/1:3,2:5:6:65,6,0 ./. +chr6 31349922 rs115755206 C T 153 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.188;DB;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=1;MLEAF=0.125;MQ=31.21;MQ0=0;MQRankSum=-0.206;QD=10.93;ReadPosRankSum=-0.977;SB=-9.337e+01 GT:AD:DP:GQ:PL 0/1:8,6:14:99:189,0,154 0/0:11,0:11:27:0,27,331 0/0:17,0:17:42:0,42,567 0/0:16,0:17:24:0,24,304 +chr6 31474200 . G T 91.84 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.874;DP=73;Dels=0.00;FS=101.389;HaplotypeScore=2.4653;MLEAC=4;MLEAF=0.500;MQ=29.75;MQ0=0;MQRankSum=0.471;QD=1.26;ReadPosRankSum=-0.287;SB=-9.092e-01 GT:AD:DP:GQ:PL 0/1:16,3:20:37:37,0,447 0/1:16,3:19:66:66,0,402 0/1:18,2:20:26:26,0,410 0/1:12,2:14:4:4,0,293 +chr6 31602076 . C G 38.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.228;DP=185;Dels=0.01;FS=22.980;HaplotypeScore=58.3567;MLEAC=2;MLEAF=0.250;MQ=22.44;MQ0=0;MQRankSum=0.591;QD=0.43;ReadPosRankSum=-3.370;SB=-9.933e-01 GT:AD:DP:GQ:PL 0/1:39,4:43:39:39,0,433 0/1:40,5:45:39:39,0,386 0/0:53,2:55:27:0,27,515 0/0:38,3:41:2:0,2,550 +chr6 31605069 . T G 66.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.814;DP=196;Dels=0.00;FS=31.017;HaplotypeScore=7.6673;MLEAC=3;MLEAF=0.375;MQ=22.06;MQ0=0;MQRankSum=1.601;QD=0.44;ReadPosRankSum=-0.330;SB=-6.571e-01 GT:AD:DP:GQ:PL 0/1:46,3:49:31:31,0,501 0/1:42,5:47:69:69,0,217 0/1:51,2:54:9:9,0,377 0/0:45,1:46:45:0,45,499 +chr6 31609261 . G A 85.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.469;DP=135;Dels=0.04;FS=82.643;HaplotypeScore=38.7894;MLEAC=3;MLEAF=0.375;MQ=20.43;MQ0=0;MQRankSum=-1.556;QD=0.82;ReadPosRankSum=1.977;SB=-3.335e+00 GT:AD:DP:GQ:PL 0/1:25,10:35:76:76,0,261 0/1:23,6:29:47:47,0,317 0/1:30,5:35:1:1,0,390 0/0:27,3:30:5:0,5,220 +chr6 31658277 . T C 120.21 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.127;DP=136;Dels=0.01;FS=14.350;HaplotypeScore=8.4334;MLEAC=2;MLEAF=0.250;MQ=27.85;MQ0=0;MQRankSum=0.481;QD=1.62;ReadPosRankSum=-3.258;SB=-2.430e+00 GT:AD:DP:GQ:PL 0/0:28,1:29:28:0,28,605 0/1:32,2:34:11:11,0,382 0/1:31,8:39:99:149,0,476 0/0:31,2:33:6:0,6,435 +chr6 31695024 . G T 427.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.982;DP=163;Dels=0.01;FS=51.845;HaplotypeScore=12.9289;MLEAC=4;MLEAF=0.500;MQ=25.05;MQ0=0;MQRankSum=2.528;QD=2.62;ReadPosRankSum=-1.662;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,5:38:99:105,0,462 0/1:32,8:40:99:165,0,512 0/1:39,8:47:99:108,0,566 0/1:32,5:37:92:92,0,226 +chr6 31734508 . C T 78.96 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.995;DP=114;Dels=0.00;FS=29.093;HaplotypeScore=5.2086;MLEAC=3;MLEAF=0.375;MQ=27.52;MQ0=0;MQRankSum=-0.190;QD=0.69;ReadPosRankSum=1.686;SB=22.61 GT:AD:DP:GQ:PL 0/1:13,2:18:39:39,0,162 0/1:26,3:31:38:38,0,401 0/1:28,3:32:16:16,0,520 0/1:28,4:33:28:28,0,436 +chr6 31746800 . C T 89.34 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.303;DP=76;Dels=0.03;FS=7.080;HaplotypeScore=5.1730;MLEAC=4;MLEAF=0.500;MQ=30.03;MQ0=0;MQRankSum=-0.671;QD=1.18;ReadPosRankSum=-2.491;SB=-2.799e+00 GT:AD:DP:GQ:PL 0/1:11,1:12:1:1,0,254 0/1:19,2:21:9:9,0,328 0/1:21,2:23:7:7,0,533 0/1:14,4:18:99:111,0,105 +chr6 31749283 . A G 80.43 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.198;DP=48;Dels=0.02;FS=2.558;HaplotypeScore=1.7734;MLEAC=3;MLEAF=0.375;MQ=29.88;MQ0=0;MQRankSum=-2.807;QD=2.06;ReadPosRankSum=0.849;SB=1.41 GT:AD:DP:GQ:PL 0/1:12,3:15:53:53,0,219 0/1:12,3:15:23:23,0,265 0/1:7,2:9:47:47,0,108 0/0:8,0:8:9:0,9,119 +chr6 31762606 . A C 143.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.066;DP=88;Dels=0.01;FS=41.900;HaplotypeScore=4.8887;MLEAC=4;MLEAF=0.500;MQ=25.26;MQ0=0;MQRankSum=-1.095;QD=1.63;ReadPosRankSum=-1.276;SB=-5.903e-01 GT:AD:DP:GQ:PL 0/1:21,4:25:41:41,0,291 0/1:20,5:26:93:93,0,338 0/1:19,5:24:44:44,0,343 0/1:11,1:12:7:7,0,153 +chr6 31839309 rs148242260 C T 1875.99 . AC=8;AF=1.00;AN=8;DB;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=32.40;MQ0=0;QD=32.91;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:45:533,45,0 1/1:2,15:17:45:528,45,0 1/1:1,16:17:48:613,48,0 1/1:1,7:8:21:241,21,0 +chr6 31851579 . T A 70.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.225;DP=103;Dels=0.05;FS=3.966;HaplotypeScore=18.8807;MLEAC=3;MLEAF=0.375;MQ=19.16;MQ0=0;MQRankSum=1.091;QD=0.84;ReadPosRankSum=-1.283;SB=15.35 GT:AD:DP:GQ:PL 0/1:22,2:26:21:63,0,21 0/1:14,1:20:14:14,0,125 0/1:27,4:34:36:36,0,173 0/0:14,0:18:9:0,9,78 +chr6 31855977 . C A 175.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.793;DP=74;Dels=0.00;FS=95.943;HaplotypeScore=7.5684;MLEAC=4;MLEAF=0.500;MQ=25.44;MQ0=0;MQRankSum=-2.183;QD=2.38;ReadPosRankSum=0.391;SB=1.03 GT:AD:DP:GQ:PL 0/1:15,4:19:11:11,0,289 0/1:12,2:14:26:26,0,154 0/1:19,7:27:99:126,0,390 0/1:11,3:14:55:55,0,165 +chr6 31864547 rs116509925 G T 113.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.647;DB;DP=114;Dels=0.00;FS=6.529;HaplotypeScore=0.2416;MLEAC=1;MLEAF=0.125;MQ=34.33;MQ0=0;MQRankSum=-0.211;QD=4.38;ReadPosRankSum=-0.544;SB=-5.499e+01 GT:AD:DP:GQ:PL 0/1:20,6:26:99:150,0,622 0/0:31,0:31:78:0,78,969 0/0:27,0:27:81:0,81,1032 0/0:30,0:30:81:0,81,944 +chr6 31868995 . C G 75.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.909;DP=44;Dels=0.00;FS=28.467;HaplotypeScore=2.4129;MLEAC=3;MLEAF=0.375;MQ=22.24;MQ0=0;MQRankSum=1.815;QD=2.42;ReadPosRankSum=-0.024;SB=0.213 GT:AD:DP:GQ:PL 0/1:10,2:12:51:51,0,59 0/1:7,2:9:26:46,0,26 0/0:13,0:13:12:0,12,133 0/1:9,1:10:21:21,0,67 +chr6 31913141 . C T 56.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.927;DP=86;Dels=0.00;FS=12.879;HaplotypeScore=3.4577;MLEAC=2;MLEAF=0.250;MQ=32.18;MQ0=0;MQRankSum=-4.144;QD=1.26;ReadPosRankSum=3.581;SB=0.243 GT:AD:DP:GQ:PL 0/0:19,2:21:27:0,27,575 0/1:9,3:12:21:21,0,193 0/1:28,5:33:77:77,0,572 0/0:20,0:20:39:0,39,499 +chr6 31931681 . C T 129.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-6.015;DP=240;Dels=0.00;FS=133.838;HaplotypeScore=3.0660;MLEAC=2;MLEAF=0.250;MQ=29.41;MQ0=0;MQRankSum=-1.874;QD=1.08;ReadPosRankSum=-1.062;SB=-2.085e+00 GT:AD:DP:GQ:PL 0/1:59,6:65:12:12,0,1356 0/1:44,11:55:99:158,0,878 0/0:59,2:61:76:0,76,1438 0/0:53,6:59:10:0,10,1272 +chr6 31937253 . G C 168.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.465;DP=87;Dels=0.01;FS=7.036;HaplotypeScore=3.9048;MLEAC=4;MLEAF=0.500;MQ=33.20;MQ0=0;MQRankSum=-1.158;QD=1.94;ReadPosRankSum=0.176;SB=-1.310e+00 GT:AD:DP:GQ:PL 0/1:13,2:16:40:40,0,325 0/1:16,1:17:2:2,0,308 0/1:25,3:28:34:34,0,528 0/1:19,6:25:99:133,0,427 +chr6 32007933 . C A 40.23 . AC=4;AF=1.00;AN=4;BaseQRankSum=-1.567;DP=63;Dels=0.00;FS=27.699;HaplotypeScore=0.2892;MLEAC=4;MLEAF=1.00;MQ=8.23;MQ0=0;MQRankSum=2.194;QD=1.39;ReadPosRankSum=0.313;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:13,2:15:3:23,3,0 1/1:11,3:14:6:51,6,0 +chr6 32015886 . C G 264.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.175;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.3005;MLEAC=4;MLEAF=0.500;MQ=24.58;MQ0=0;MQRankSum=1.071;QD=4.07;ReadPosRankSum=-1.404;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,6:14:41:137,0,41 0/1:14,5:19:71:71,0,171 0/1:14,4:18:69:69,0,220 0/1:13,1:14:30:30,0,55 +chr6 32029215 . T G 39.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.166;DP=63;Dels=0.02;FS=35.278;HaplotypeScore=2.2716;MLEAC=4;MLEAF=0.500;MQ=13.47;MQ0=0;MQRankSum=1.664;QD=0.76;ReadPosRankSum=-0.792;SB=3.94 GT:AD:DP:GQ:PL 0/1:27,4:31:23:23,0,74 0/1:6,1:8:21:27,0,21 0/0:10,1:11:3:0,3,32 1/1:9,3:12:3:31,3,0 +chr6 32039887 . C A 187.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.499;DP=80;Dels=0.03;FS=24.919;HaplotypeScore=3.2127;MLEAC=4;MLEAF=0.500;MQ=27.10;MQ0=0;MQRankSum=1.132;QD=2.35;ReadPosRankSum=-1.306;SB=-2.245e-01 GT:AD:DP:GQ:PL 0/1:21,2:23:36:36,0,290 0/1:8,6:14:47:110,0,47 0/1:21,3:24:73:73,0,312 0/1:16,1:17:11:11,0,237 +chr6 32046827 . G T 72.96 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.924;DP=47;Dels=0.04;FS=5.386;HaplotypeScore=2.1856;MLEAC=2;MLEAF=0.250;MQ=21.84;MQ0=0;MQRankSum=1.932;QD=2.52;ReadPosRankSum=2.827;SB=40.19 GT:AD:DP:GQ:PL 0/0:6,0:7:3:0,3,41 0/0:9,0:10:6:0,6,43 0/1:9,2:12:14:40,0,14 0/1:12,4:16:13:69,0,13 +chr6 32096001 rs116300399 C A 512.51 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.161;DB;DP=46;Dels=0.00;FS=8.221;HaplotypeScore=1.6590;MLEAC=4;MLEAF=0.500;MQ=22.60;MQ0=0;MQRankSum=1.528;QD=13.49;ReadPosRankSum=0.062;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:9:0,9,125 1/1:4,10:14:5:232,5,0 1/1:5,9:14:1:203,1,0 0/1:3,7:10:15:121,0,15 +chr6 32184574 rs114708290 G A 140 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.421;DB;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.1442;MLEAC=1;MLEAF=0.125;MQ=34.88;MQ0=0;MQRankSum=-1.340;QD=8.75;ReadPosRankSum=-0.728;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:99:176,0,251 0/0:22,0:22:54:0,54,716 0/0:16,0:16:39:0,39,486 0/0:7,0:7:21:0,21,272 +chr6 32299908 rs114667990 G C 499.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.794;DB;DP=225;Dels=0.00;FS=7.993;HaplotypeScore=0.9677;MLEAC=1;MLEAF=0.125;MQ=34.54;MQ0=0;MQRankSum=-1.346;QD=10.87;ReadPosRankSum=1.070;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:27,19:46:99:536,0,732 0/0:69,0:69:99:0,199,2470 0/0:82,0:82:99:0,241,3016 0/0:28,0:28:78:0,78,958 +chr6 32303848 rs115836045 G A 293.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.209;DB;DP=23;Dels=0.00;FS=3.132;HaplotypeScore=1.4572;MLEAC=3;MLEAF=0.375;MQ=38.29;MQ0=0;MQRankSum=-0.527;QD=15.43;ReadPosRankSum=0.713;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:33:33,0,70 0/0:4,0:4:12:0,12,166 0/1:2,7:9:59:234,0,59 0/1:3,2:5:69:69,0,103 +chr6 32304404 . T G 63.38 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.201;DP=57;Dels=0.00;FS=37.063;HaplotypeScore=1.4910;MLEAC=1;MLEAF=0.125;MQ=35.73;MQ0=0;MQRankSum=-0.839;QD=2.76;ReadPosRankSum=-1.346;SB=0.857 GT:AD:DP:GQ:PL 0/0:13,0:13:30:0,30,392 0/1:19,4:23:99:99,0,555 0/0:17,1:18:12:0,12,536 0/0:3,0:3:6:0,6,66 +chr6 32304502 . C G 52.32 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.774;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.6390;MLEAC=4;MLEAF=0.667;MQ=21.78;MQ0=0;MQRankSum=1.774;QD=2.62;ReadPosRankSum=-0.694;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,1:6:3:22,3,0 0/1:6,1:7:23:24,0,23 0/1:5,2:7:45:45,0,50 ./. +chr6 32330184 . C A 38.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=7;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.44;MQ0=0;MQRankSum=0.736;QD=12.92;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:70,6,0 ./. ./. ./. +chr6 32339548 rs115663894 G A 2313.84 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.039;DB;DP=98;Dels=0.00;FS=12.900;HaplotypeScore=1.3045;MLEAC=7;MLEAF=0.875;MQ=32.77;MQ0=0;MQRankSum=0.777;QD=23.61;ReadPosRankSum=1.201;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,13:25:99:402,0,387 1/1:9,25:34:3:832,3,0 1/1:3,19:22:19:624,19,0 1/1:4,13:17:39:499,39,0 +chr6 32411376 rs116131107 T G 377.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.226;DB;DP=54;Dels=0.00;FS=10.148;HaplotypeScore=0.4867;MLEAC=2;MLEAF=0.250;MQ=33.17;MQ0=0;MQRankSum=1.879;QD=13.03;ReadPosRankSum=0.206;SB=-1.179e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:51:0,51,601 0/1:9,5:14:99:169,0,244 0/1:8,7:15:99:250,0,148 0/0:7,0:7:9:0,9,125 +chr6 32427467 rs116753691 A G 96.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.551;DB;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5581;MLEAC=1;MLEAF=0.125;MQ=33.41;MQ0=0;MQRankSum=-0.540;QD=5.71;ReadPosRankSum=2.232;SB=-1.151e-02 GT:AD:DP:GQ:PL 0/1:12,5:17:99:133,0,395 0/0:16,0:16:42:0,42,547 0/0:16,0:16:36:0,36,426 0/0:23,0:24:54:0,54,675 +chr6 32486546 rs112292599 C T 62.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.811;DB;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.9571;MLEAC=3;MLEAF=0.375;MQ=12.82;MQ0=0;MQRankSum=-2.043;QD=0.98;ReadPosRankSum=2.368;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,46 0/1:16,10:26:38:38,0,65 0/1:12,12:24:45:45,0,48 0/1:8,6:14:22:22,0,47 +chr6 32489940 rs74461445 G C 123.35 . AC=6;AF=1.00;AN=6;DB;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=1.7397;MLEAC=6;MLEAF=1.00;MQ=17.60;MQ0=0;QD=4.93;SB=-3.569e+01 GT:AD:DP:GQ:PL 1/1:4,4:8:3:31,3,0 ./. 1/1:2,4:6:3:37,3,0 1/1:1,9:10:9:91,9,0 +chr6 32521785 rs72844190 T G 1582.55 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.545;DB;DP=162;Dels=0.00;FS=12.538;HaplotypeScore=5.4393;MLEAC=7;MLEAF=0.875;MQ=19.21;MQ0=0;MQRankSum=-2.533;QD=9.77;ReadPosRankSum=1.899;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,20:40:99:378,0,287 1/1:2,34:36:39:434,39,0 1/1:7,30:37:30:323,30,0 1/1:15,33:49:26:492,26,0 +chr6 32522408 . G T 302 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.590;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.1662;MLEAC=1;MLEAF=0.125;MQ=18.93;MQ0=0;MQRankSum=3.185;QD=10.41;ReadPosRankSum=0.597;SB=2.99 GT:AD:DP:GQ:PL 0/0:30,0:31:27:0,27,297 0/1:14,15:29:43:338,0,43 0/0:23,0:23:36:0,36,361 0/0:21,0:21:24:0,24,240 +chr6 32546914 rs181125806 C T 43.09 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.712;DB;DP=133;Dels=0.00;FS=4.501;HaplotypeScore=8.1000;MLEAC=1;MLEAF=0.125;MQ=25.84;MQ0=0;MQRankSum=-0.787;QD=1.03;ReadPosRankSum=-1.731;SB=0.866 GT:AD:DP:GQ:PL 0/0:27,2:29:16:0,16,377 0/0:33,3:36:13:0,13,631 0/1:36,5:42:79:79,0,647 0/0:25,1:26:25:0,25,656 +chr6 32546928 rs140237453 CA C 585.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.873;DB;DP=105;FS=0.000;HaplotypeScore=80.7703;MLEAC=3;MLEAF=0.375;MQ=20.98;MQ0=0;MQRankSum=2.045;QD=7.51;ReadPosRankSum=-0.521;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/0:25,0:11:33:0,33,509 0/1:21,4:10:99:158,0,158 0/1:22,8:13:99:241,0,155 0/1:11,6:12:99:239,0,194 +chr6 32548628 rs34624872 G A 164.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.131;DB;DP=330;Dels=0.00;FS=0.660;HaplotypeScore=1.1290;MLEAC=4;MLEAF=0.500;MQ=15.09;MQ0=0;MQRankSum=0.276;QD=0.50;ReadPosRankSum=1.629;SB=-2.527e+01 GT:AD:DP:GQ:PL 0/1:54,17:71:99:140,0,448 0/1:68,8:76:18:18,0,285 0/1:99,6:105:12:12,0,415 0/1:66,12:78:37:37,0,363 +chr6 32550272 rs74212215 A G 823.83 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.661;DB;DP=42;Dels=0.00;FS=6.864;HaplotypeScore=7.2742;MLEAC=5;MLEAF=0.625;MQ=28.89;MQ0=0;MQRankSum=3.152;QD=19.61;ReadPosRankSum=-0.511;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:15:109,0,15 0/1:6,7:13:28:232,0,28 0/1:3,11:14:31:325,0,31 1/1:1,6:7:18:203,18,0 +chr6 32551939 rs9269941 G T 173.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.307;DB;DP=107;Dels=0.00;FS=15.508;HaplotypeScore=7.6042;MLEAC=4;MLEAF=0.500;MQ=12.12;MQ0=0;MQRankSum=0.810;QD=1.62;ReadPosRankSum=-1.322;SB=-2.517e+00 GT:AD:DP:GQ:PL 0/1:19,3:22:29:29,0,46 0/1:15,7:22:16:54,0,16 0/1:24,8:32:26:26,0,81 0/1:15,16:31:15:107,0,15 +chr6 32552072 rs17879995 T G 862.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.916;DB;DP=148;Dels=0.01;FS=4.349;HaplotypeScore=17.9347;MLEAC=3;MLEAF=0.375;MQ=22.72;MQ0=0;MQRankSum=1.615;QD=7.84;ReadPosRankSum=2.226;SB=-3.610e+02 GT:AD:DP:GQ:PL 0/1:12,19:32:99:411,0,119 0/0:38,0:38:69:0,69,671 0/1:19,21:40:99:306,0,179 0/1:27,10:37:99:189,0,377 +chr6 32552183 rs28986202 A AC 264.81 . AC=6;AF=1.00;AN=6;BaseQRankSum=-0.747;DB;DP=20;FS=0.000;HaplotypeScore=35.3459;MLEAC=6;MLEAF=1.00;MQ=19.17;MQ0=0;MQRankSum=0.747;QD=15.58;ReadPosRankSum=0.747;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:4,5:5:9:177,9,0 ./. 1/1:1,3:2:6:88,6,0 1/1:2,2:1:3:45,3,0 +chr6 32609015 rs9272686 C T 722.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.749;DB;DP=105;Dels=0.03;FS=0.000;HaplotypeScore=0.9736;MLEAC=3;MLEAF=0.375;MQ=27.99;MQ0=0;MQRankSum=2.723;QD=9.39;ReadPosRankSum=2.737;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,0:28:63:0,63,735 0/1:16,8:24:99:197,0,217 0/1:16,9:25:99:251,0,351 0/1:13,12:25:99:318,0,341 +chr6 32610044 rs9272755 T C 255.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.720;DB;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=3;MLEAF=0.375;MQ=23.08;MQ0=0;MQRankSum=-1.610;QD=3.16;ReadPosRankSum=-0.839;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:31,0:31:63:0,63,692 0/1:22,6:28:68:68,0,329 0/1:20,10:31:99:143,0,316 0/1:16,6:22:88:88,0,174 +chr6 32610445 rs1048381 G A 243.05 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.708;DB;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=3.5079;MLEAC=5;MLEAF=0.625;MQ=15.16;MQ0=0;MQRankSum=3.888;QD=6.08;ReadPosRankSum=0.680;SB=-1.204e+02 GT:AD:DP:GQ:PL 0/0:8,0:8:9:0,9,95 1/1:20,2:22:3:28,3,0 1/1:2,5:7:12:128,12,0 0/1:5,5:10:7:133,0,7 +chr6 32610635 rs34974787 ATG A 196.80 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.920;DB;DP=54;FS=0.000;HaplotypeScore=20.5342;MLEAC=3;MLEAF=0.500;MQ=11.78;MQ0=0;MQRankSum=-1.517;QD=7.87;RPA=2,1;RU=TG;ReadPosRankSum=1.920;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:18,0:2:6:0,6,91 0/1:6,5:2:45:45,0,45 1/1:7,7:4:12:203,12,0 ./. +chr6 32629341 rs9273721 C A 37.30 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.857;DB;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=4.1643;MLEAC=3;MLEAF=0.375;MQ=25.69;MQ0=0;MQRankSum=-1.528;QD=1.96;ReadPosRankSum=0.783;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:34:34,0,208 0/0:8,0:8:12:0,12,145 1/1:1,1:2:3:28,3,0 0/1:5,2:8:19:19,0,101 +chr6 32713917 . G T 30.76 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.036;DP=192;Dels=0.00;FS=21.920;HaplotypeScore=1.8249;MLEAC=2;MLEAF=0.250;MQ=13.00;MQ0=0;MQRankSum=2.548;QD=0.32;ReadPosRankSum=-2.805;SB=-9.017e-01 GT:AD:DP:GQ:PL 0/0:45,1:46:9:0,9,102 0/1:46,2:48:12:12,0,88 0/1:46,3:49:59:59,0,108 0/0:48,1:49:21:0,21,233 +chr6 32725075 . C G 50.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.269;DP=41;Dels=0.05;FS=20.270;HaplotypeScore=9.1462;MLEAC=4;MLEAF=0.500;MQ=18.12;MQ0=0;MQRankSum=1.132;QD=2.11;ReadPosRankSum=-0.377;SB=4.36 GT:AD:DP:GQ:PL 1/1:6,1:7:3:34,3,0 0/0:7,2:9:3:0,3,40 1/1:11,4:15:6:60,6,0 0/0:6,2:8:6:0,6,54 +chr6 32809463 . T G 1033.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.353;DP=190;Dels=0.02;FS=178.205;HaplotypeScore=17.3544;MLEAC=4;MLEAF=0.500;MQ=31.81;MQ0=0;MQRankSum=-7.033;QD=5.44;ReadPosRankSum=4.486;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,13:43:99:191,0,720 0/1:34,19:53:99:392,0,842 0/1:38,14:52:99:230,0,930 0/1:25,14:39:99:263,0,513 +chr6 32815811 . G C 47.82 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.923;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=3.0302;MLEAC=5;MLEAF=0.625;MQ=16.13;MQ0=0;MQRankSum=2.259;QD=1.23;ReadPosRankSum=-1.304;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:11,2:13:3:32,3,0 0/1:7,1:8:17:17,0,17 0/1:9,2:11:17:17,0,23 0/1:5,1:6:20:24,0,20 +chr6 33037768 rs115867762 G A 59.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.182;DB;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.2499;MLEAC=1;MLEAF=0.125;MQ=34.30;MQ0=0;MQRankSum=-1.660;QD=3.69;ReadPosRankSum=-0.765;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:95:95,0,434 0/0:16,0:16:45:0,45,560 0/0:13,0:13:33:0,33,393 0/0:4,0:4:12:0,12,161 +chr6 33041226 rs115022481 C T 360.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.880;DB;DP=290;Dels=0.00;FS=0.000;HaplotypeScore=2.2494;MLEAC=1;MLEAF=0.125;MQ=34.95;MQ0=0;MQRankSum=-2.124;QD=6.02;ReadPosRankSum=-0.193;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:44,16:60:99:397,0,971 0/0:60,0:60:99:0,165,2028 0/0:84,0:84:99:0,210,2612 0/0:86,0:86:99:0,244,2956 +chr6 33052958 rs1042335 C T 76.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.007;DB;DP=232;Dels=0.00;FS=7.938;HaplotypeScore=6.6119;MLEAC=1;MLEAF=0.125;MQ=19.20;MQ0=0;MQRankSum=2.571;QD=2.03;ReadPosRankSum=1.330;SB=-1.143e-02 GT:AD:DP:GQ:PL 0/1:33,5:38:99:113,0,356 0/0:65,0:65:54:0,54,531 0/0:66,0:66:78:0,78,814 0/0:63,0:63:69:0,69,715 +chr6 33134392 rs139804397 C A,G 96.88 . AC=3,1;AF=0.375,0.125;AN=8;BaseQRankSum=-2.066;DB;DP=42;Dels=0.00;FS=1.837;HaplotypeScore=2.6064;MLEAC=3,1;MLEAF=0.375,0.125;MQ=26.84;MQ0=0;MQRankSum=-0.534;QD=2.31;ReadPosRankSum=1.184;SB=-5.877e+01 GT:AD:DP:GQ:PL 0/1:7,1,0:8:20:20,0,89,29,92,121 0/2:6,1,4:12:37:86,70,126,0,37,50 0/1:10,2,2:14:29:36,0,191,29,172,223 0/1:6,2,0:8:32:32,0,74,38,77,115 +chr6 33137840 . C A 173.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.529;DP=196;Dels=0.01;FS=65.752;HaplotypeScore=7.1865;MLEAC=3;MLEAF=0.375;MQ=21.70;MQ0=0;MQRankSum=1.981;QD=1.21;ReadPosRankSum=-1.057;SB=1.29 GT:AD:DP:GQ:PL 0/1:39,7:46:83:83,0,459 0/1:37,5:42:60:60,0,329 0/1:49,7:56:74:74,0,382 0/0:47,4:51:22:0,22,705 +chr6 33162450 rs186981565 G T 186.93 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.974;DB;DP=63;Dels=0.05;FS=12.180;HaplotypeScore=21.8170;MLEAC=4;MLEAF=0.500;MQ=21.71;MQ0=0;MQRankSum=0.952;QD=2.97;ReadPosRankSum=-1.670;SB=22.81 GT:AD:DP:GQ:PL 0/1:12,7:19:99:121,0,101 0/1:8,6:14:17:59,0,17 0/1:11,1:12:16:16,0,41 1/1:12,2:15:3:33,3,0 +chr6 33179546 . T A 133.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.226;DP=171;Dels=0.01;FS=103.112;HaplotypeScore=27.5667;MLEAC=2;MLEAF=0.250;MQ=29.32;MQ0=0;MQRankSum=-0.421;QD=1.54;ReadPosRankSum=-0.489;SB=1.87 GT:AD:DP:GQ:PL 0/1:42,3:46:19:19,0,907 0/0:33,1:37:63:0,63,737 0/0:45,2:47:46:0,46,904 0/1:32,8:40:99:156,0,587 +chr6 33410996 . A G 80.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.171;DP=136;Dels=0.02;FS=15.980;HaplotypeScore=13.1023;MLEAC=2;MLEAF=0.250;MQ=25.00;MQ0=0;MQRankSum=0.286;QD=1.03;ReadPosRankSum=0.784;SB=0.015 GT:AD:DP:GQ:PL 0/0:26,0:26:36:0,36,407 0/1:32,5:37:65:65,0,354 0/1:36,4:40:57:57,0,358 0/0:30,0:30:36:0,36,357 +chr6 33411035 . T C 36.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.486;DP=128;Dels=0.00;FS=4.478;HaplotypeScore=4.1167;MLEAC=2;MLEAF=0.250;MQ=33.94;MQ0=0;MQRankSum=-2.199;QD=0.55;ReadPosRankSum=-0.942;SB=-2.164e+00 GT:AD:DP:GQ:PL 0/0:26,1:27:33:0,33,624 0/1:32,3:35:5:5,0,878 0/0:33,1:34:57:0,57,1042 0/1:27,5:32:70:70,0,497 +chr6 33641380 . G A 214.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.907;DP=172;Dels=0.00;FS=48.952;HaplotypeScore=8.7670;MLEAC=3;MLEAF=0.375;MQ=33.29;MQ0=0;MQRankSum=0.729;QD=1.56;ReadPosRankSum=0.494;SB=-5.420e-01 GT:AD:DP:GQ:PL 0/0:33,2:35:8:0,8,916 0/1:34,7:41:99:132,0,974 0/1:43,3:46:10:10,0,921 0/1:44,6:50:99:114,0,1140 +chr6 33648228 rs2229638 C T 2626.58 . AC=7;AF=0.875;AN=8;BaseQRankSum=5.189;DB;DP=113;Dels=0.00;FS=3.191;HaplotypeScore=5.4870;MLEAC=7;MLEAF=0.875;MQ=33.12;MQ0=0;MQRankSum=0.708;QD=23.24;ReadPosRankSum=1.953;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:7,17:24:19:600,19,0 0/1:20,9:29:99:224,0,467 1/1:2,27:29:81:1004,81,0 1/1:7,24:31:42:843,42,0 +chr6 33657903 rs145744947 C A 144.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.872;DB;DP=123;Dels=0.00;FS=16.917;HaplotypeScore=3.2239;MLEAC=4;MLEAF=0.500;MQ=37.90;MQ0=0;MQRankSum=-3.101;QD=1.18;ReadPosRankSum=-1.816;SB=-1.897e-02 GT:AD:DP:GQ:PL 0/1:27,4:31:50:50,0,787 0/1:30,3:33:27:27,0,843 0/1:23,4:27:56:56,0,672 0/1:27,4:32:54:54,0,730 +chr6 33752069 . C G 119.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.123;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7174;MLEAC=3;MLEAF=0.375;MQ=38.64;MQ0=0;MQRankSum=-4.070;QD=1.54;ReadPosRankSum=-1.826;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,4:25:71:71,0,495 0/1:28,5:33:72:72,0,717 0/0:27,0:27:72:0,72,949 0/1:18,2:20:20:20,0,410 +chr6 34214348 rs34410712 C T 214.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.005;DB;DP=62;Dels=0.00;FS=3.099;HaplotypeScore=0.9406;MLEAC=3;MLEAF=0.375;MQ=33.06;MQ0=0;MQRankSum=-1.569;QD=4.47;ReadPosRankSum=0.390;SB=-4.052e+01 GT:AD:DP:GQ:PL 0/0:14,0:14:39:0,39,470 0/1:9,6:15:99:135,0,236 0/1:18,4:22:90:90,0,533 0/1:9,2:11:33:33,0,205 +chr6 34214670 rs4711389 A G 74.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.556;DB;DP=42;Dels=0.00;FS=2.530;HaplotypeScore=2.0440;MLEAC=3;MLEAF=0.375;MQ=25.51;MQ0=0;MQRankSum=1.070;QD=2.50;ReadPosRankSum=0.389;SB=0.028 GT:AD:DP:GQ:PL 0/1:8,1:9:20:20,0,116 0/0:11,0:12:21:0,21,215 0/1:6,1:7:19:19,0,88 0/1:11,3:14:79:79,0,160 +chr6 34544413 . G A 53.41 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.217;DP=261;Dels=0.00;FS=71.192;HaplotypeScore=6.0108;MLEAC=2;MLEAF=0.250;MQ=15.85;MQ0=0;MQRankSum=1.766;QD=0.41;ReadPosRankSum=-0.015;SB=-6.136e-01 GT:AD:DP:GQ:PL 0/0:70,1:71:24:0,24,551 0/0:55,5:61:1:0,1,324 0/1:59,8:67:55:55,0,261 0/1:59,3:62:38:38,0,152 +chr6 34789668 . C A 50.52 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.806;DP=185;Dels=0.00;FS=36.813;HaplotypeScore=6.9474;MLEAC=3;MLEAF=0.375;MQ=34.11;MQ0=0;MQRankSum=2.030;QD=0.38;ReadPosRankSum=-1.346;SB=0.055 GT:AD:DP:GQ:PL 0/1:42,4:46:15:15,0,1084 0/1:44,4:48:22:22,0,952 0/0:48,4:52:10:0,10,1265 0/1:34,4:39:56:56,0,674 +chr6 34831866 rs3734264 G A 1514.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.294;DB;DP=187;Dels=0.01;FS=0.775;HaplotypeScore=1.7285;MLEAC=3;MLEAF=0.375;MQ=40.84;MQ0=0;MQRankSum=-2.202;QD=11.22;ReadPosRankSum=2.256;SB=-2.860e+02 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,153,2089 0/1:27,11:38:99:329,0,944 0/1:37,21:58:99:691,0,1335 0/1:22,16:38:99:538,0,611 +chr6 34855677 . C T 63.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.770;DP=139;Dels=0.00;FS=36.584;HaplotypeScore=6.2470;MLEAC=2;MLEAF=0.250;MQ=25.10;MQ0=0;MQRankSum=1.004;QD=0.99;ReadPosRankSum=-1.608;SB=-2.799e+00 GT:AD:DP:GQ:PL 0/1:31,5:36:84:84,0,393 0/0:32,1:34:1:0,1,259 0/0:39,1:41:32:0,32,588 0/1:25,1:28:19:19,0,70 +chr6 35203203 rs13214290 T G 2185.12 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.910;DB;DP=81;Dels=0.00;FS=25.241;HaplotypeScore=2.1652;MLEAC=8;MLEAF=1.00;MQ=32.77;MQ0=0;MQRankSum=2.512;QD=26.98;ReadPosRankSum=1.729;SB=-3.108e+02 GT:AD:DP:GQ:PL 1/1:2,16:18:21:548,21,0 1/1:5,19:24:27:646,27,0 1/1:4,17:21:26:557,26,0 1/1:4,14:18:10:473,10,0 +chr6 35258478 . A C 204.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.224;DP=133;Dels=0.02;FS=85.469;HaplotypeScore=32.5929;MLEAC=4;MLEAF=0.500;MQ=22.96;MQ0=0;MQRankSum=0.077;QD=1.54;ReadPosRankSum=0.533;SB=0.224 GT:AD:DP:GQ:PL 0/1:23,6:29:75:75,0,394 0/1:34,4:38:36:36,0,363 0/1:28,5:34:32:32,0,301 0/1:22,7:29:99:104,0,209 +chr6 35392436 . C G 31.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.299;DP=62;Dels=0.00;FS=20.551;HaplotypeScore=0.9963;MLEAC=1;MLEAF=0.125;MQ=36.36;MQ0=0;MQRankSum=-1.667;QD=1.32;ReadPosRankSum=-0.747;SB=-4.197e+00 GT:AD:DP:GQ:PL 0/1:14,1:15:2:2,0,396 0/0:24,1:25:30:0,30,700 0/0:13,0:13:33:0,33,421 0/1:6,3:9:66:66,0,166 +chr6 35392484 . G T 156.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.732;DP=63;Dels=0.00;FS=33.366;HaplotypeScore=3.6637;MLEAC=3;MLEAF=0.375;MQ=29.11;MQ0=0;MQRankSum=-2.313;QD=3.12;ReadPosRankSum=-0.151;SB=-2.944e+00 GT:AD:DP:GQ:PL 0/0:12,1:13:5:0,5,282 0/1:10,3:13:72:72,0,214 0/1:13,4:17:72:72,0,208 0/1:16,4:20:54:54,0,281 +chr6 35478534 . T TCC 396.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.445;DP=63;FS=0.000;HaplotypeScore=16.5617;MLEAC=4;MLEAF=0.500;MQ=20.93;MQ0=0;MQRankSum=0.543;QD=6.29;RPA=1,3;RU=C;ReadPosRankSum=-0.362;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:9,5:7:60:92,0,60 0/1:13,2:7:13:133,0,13 0/1:13,5:8:49:148,0,49 0/1:8,0:5:1:73,0,1 +chr6 35544804 . G A 121.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.649;DP=153;Dels=0.00;FS=33.659;HaplotypeScore=1.4881;MLEAC=2;MLEAF=0.250;MQ=41.94;MQ0=0;MQRankSum=-4.844;QD=1.50;ReadPosRankSum=-0.135;SB=-1.723e+00 GT:AD:DP:GQ:PL 0/1:27,6:33:95:95,0,945 0/0:36,0:36:93:0,93,1274 0/1:41,7:48:68:68,0,1259 0/0:34,2:36:33:0,33,1185 +chr6 35554865 . T A 66.47 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.816;DP=330;Dels=0.00;FS=54.448;HaplotypeScore=5.7337;MLEAC=2;MLEAF=0.250;MQ=39.44;MQ0=0;MQRankSum=-4.825;QD=0.52;ReadPosRankSum=0.562;SB=-3.685e+00 GT:AD:DP:GQ:PL 0/1:81,8:89:98:98,0,2137 0/0:98,3:101:99:0,123,2817 0/0:95,7:102:33:0,33,3027 0/1:35,3:38:8:8,0,996 +chr6 35765068 rs3748050 T C 430.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.050;DB;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.4979;MLEAC=1;MLEAF=0.125;MQ=35.27;MQ0=0;MQRankSum=-1.156;QD=19.59;ReadPosRankSum=1.261;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/0:15,0:15:42:0,42,539 0/1:8,14:22:99:467,0,253 0/0:18,0:18:39:0,39,546 0/0:23,0:23:57:0,57,720 +chr6 35824992 . G A 261.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.282;DP=140;Dels=0.01;FS=2.353;HaplotypeScore=6.3350;MLEAC=3;MLEAF=0.375;MQ=35.17;MQ0=0;MQRankSum=-5.361;QD=2.59;ReadPosRankSum=3.679;SB=-9.756e-03 GT:AD:DP:GQ:PL 0/0:35,2:38:34:0,34,1020 0/1:32,8:41:99:103,0,964 0/1:34,9:43:74:74,0,959 0/1:11,5:17:99:128,0,310 +chr6 35995897 . A G 60.24 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.668;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=0.8371;MLEAC=2;MLEAF=0.333;MQ=16.45;MQ0=0;MQRankSum=2.068;QD=1.94;ReadPosRankSum=0.477;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:39:49,0,39 0/0:10,0:10:6:0,6,49 0/1:12,2:14:33:49,0,33 ./. +chr6 36027228 . T C 79.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.897;DP=61;Dels=0.05;FS=0.000;HaplotypeScore=6.7760;MLEAC=3;MLEAF=0.375;MQ=33.35;MQ0=0;MQRankSum=-3.313;QD=1.42;ReadPosRankSum=0.622;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,3:16:26:26,0,355 0/1:16,2:18:23:23,0,413 0/1:14,5:19:73:73,0,439 0/0:4,0:5:9:0,9,121 +chr6 36178066 . T C 375.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.710;DP=157;Dels=0.01;FS=131.873;HaplotypeScore=4.1921;MLEAC=4;MLEAF=0.500;MQ=34.16;MQ0=0;MQRankSum=-3.476;QD=2.39;ReadPosRankSum=1.350;SB=-3.001e-02 GT:AD:DP:GQ:PL 0/1:28,8:36:99:159,0,741 0/1:33,10:43:99:196,0,835 0/1:40,4:44:23:23,0,857 0/1:29,3:32:40:40,0,643 +chr6 36287238 . G A 61.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.156;DP=123;Dels=0.00;FS=38.440;HaplotypeScore=22.6041;MLEAC=3;MLEAF=0.375;MQ=26.50;MQ0=0;MQRankSum=-0.799;QD=0.63;ReadPosRankSum=1.672;SB=-1.088e+00 GT:AD:DP:GQ:PL 0/1:28,3:32:32:32,0,484 0/0:25,1:26:33:0,33,398 0/1:27,2:29:6:6,0,443 0/1:31,5:36:65:65,0,375 +chr6 36296514 rs41270100 C T 3722.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.001;DB;DP=182;Dels=0.00;FS=1.455;HaplotypeScore=1.2255;MLEAC=6;MLEAF=0.750;MQ=34.71;MQ0=0;MQRankSum=-3.836;QD=20.45;ReadPosRankSum=2.207;SB=-7.920e+02 GT:AD:DP:GQ:PL 0/1:28,11:39:99:296,0,925 0/1:33,16:49:99:394,0,1131 1/1:4,49:53:74:1669,74,0 1/1:1,40:41:99:1363,114,0 +chr6 36449516 . T A 32.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.445;DP=122;Dels=0.00;FS=4.551;HaplotypeScore=1.3378;MLEAC=2;MLEAF=0.250;MQ=35.18;MQ0=0;MQRankSum=-1.072;QD=0.56;ReadPosRankSum=1.084;SB=-1.629e+00 GT:AD:DP:GQ:PL 0/0:29,2:31:3:0,3,613 0/1:27,3:31:41:41,0,467 0/1:25,3:28:32:32,0,652 0/0:31,1:32:46:0,46,765 +chr6 36566752 . T G 190.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.263;DP=145;Dels=0.00;FS=14.682;HaplotypeScore=4.9557;MLEAC=4;MLEAF=0.500;MQ=28.38;MQ0=0;MQRankSum=2.524;QD=1.31;ReadPosRankSum=1.059;SB=-4.036e-02 GT:AD:DP:GQ:PL 0/1:29,4:33:63:63,0,404 0/1:29,2:31:21:21,0,365 0/1:40,3:43:36:36,0,484 0/1:33,5:38:99:113,0,266 +chr6 36567544 . C T 86.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.201;DP=144;Dels=0.04;FS=0.000;HaplotypeScore=20.7979;MLEAC=3;MLEAF=0.375;MQ=26.91;MQ0=0;MQRankSum=0.811;QD=0.87;ReadPosRankSum=-1.193;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,4:31:77:77,0,292 0/0:39,2:41:32:0,32,728 0/1:35,4:39:36:36,0,466 0/1:24,2:27:17:17,0,382 +chr6 36710269 rs3752480 A G 528.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.128;DB;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=1.4640;MLEAC=3;MLEAF=0.375;MQ=36.23;MQ0=0;MQRankSum=0.178;QD=7.89;ReadPosRankSum=0.109;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,6:18:99:186,0,297 0/0:23,0:23:66:0,66,813 0/1:18,7:25:99:185,0,420 0/1:16,6:22:99:201,0,292 +chr6 37138969 . C A 76.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.952;DP=173;Dels=0.00;FS=27.258;HaplotypeScore=1.9483;MLEAC=2;MLEAF=0.250;MQ=34.05;MQ0=0;MQRankSum=-3.222;QD=0.91;ReadPosRankSum=1.050;SB=-6.685e-01 GT:AD:DP:GQ:PL 0/1:35,4:39:33:33,0,743 0/1:39,6:45:85:85,0,847 0/0:46,1:48:50:0,50,1052 0/0:39,2:41:41:0,41,974 +chr6 37605160 . A C 40.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.357;DP=79;Dels=0.01;FS=4.847;HaplotypeScore=5.0577;MLEAC=4;MLEAF=0.500;MQ=26.85;MQ0=0;MQRankSum=-0.558;QD=0.52;ReadPosRankSum=-1.695;SB=-2.785e-01 GT:AD:DP:GQ:PL 0/1:20,2:22:11:11,0,312 0/1:16,3:19:19:19,0,225 0/1:18,2:20:29:29,0,295 0/1:15,2:17:24:24,0,92 +chr6 37611796 rs45511994 G A 60.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.125;DB;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1121;MLEAC=1;MLEAF=0.125;MQ=30.76;MQ0=0;MQRankSum=-0.781;QD=4.69;ReadPosRankSum=-0.860;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:42:0,42,525 0/1:9,4:13:97:97,0,227 0/0:22,0:22:57:0,57,665 0/0:18,0:18:39:0,39,453 +chr6 38548286 . T A 76.39 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.289;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=7.3992;MLEAC=4;MLEAF=0.667;MQ=21.24;MQ0=0;MQRankSum=1.447;QD=3.64;ReadPosRankSum=0.058;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:8,4:12:59:70,0,59 0/1:4,1:5:17:17,0,18 1/1:2,2:4:3:28,3,0 +chr6 38885010 rs11291395 TA T 1246.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.115;DB;DP=89;FS=2.339;HaplotypeScore=5.6209;MLEAC=4;MLEAF=0.500;MQ=32.54;MQ0=0;MQRankSum=-3.766;QD=14.01;ReadPosRankSum=3.967;SB=-9.000e+01 GT:AD:DP:GQ:PL 0/1:11,10:19:68:667,0,68 0/1:23,8:32:99:319,0,858 0/1:20,6:25:99:246,0,684 0/1:8,1:9:66:66,0,247 +chr6 39040654 rs2235868 A C 1403.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.746;DB;DP=165;Dels=0.01;FS=2.899;HaplotypeScore=1.5697;MLEAC=4;MLEAF=0.500;MQ=28.56;MQ0=0;MQRankSum=0.009;QD=8.51;ReadPosRankSum=-0.268;SB=-6.580e+02 GT:AD:DP:GQ:PL 0/1:22,14:36:99:350,0,352 0/1:22,17:39:99:396,0,389 0/1:26,21:47:99:458,0,544 0/1:26,14:41:99:242,0,495 +chr6 39267447 . C T 272.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.104;DP=211;Dels=0.01;FS=158.478;HaplotypeScore=6.4797;MLEAC=4;MLEAF=0.500;MQ=32.83;MQ0=0;MQRankSum=-4.021;QD=1.29;ReadPosRankSum=0.612;SB=-1.536e-01 GT:AD:DP:GQ:PL 0/1:46,7:54:99:100,0,1043 0/1:39,9:48:99:143,0,1011 0/1:54,6:60:58:58,0,1257 0/1:43,4:47:14:14,0,839 +chr6 39865095 . T A 59.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.297;DP=174;Dels=0.00;FS=4.409;HaplotypeScore=0.9763;MLEAC=2;MLEAF=0.250;MQ=33.73;MQ0=0;MQRankSum=-3.479;QD=0.82;ReadPosRankSum=-0.562;SB=-1.658e-02 GT:AD:DP:GQ:PL 0/0:45,2:47:86:0,86,1399 0/1:33,4:37:32:32,0,732 0/0:52,2:54:60:0,60,1332 0/1:30,6:36:69:69,0,714 +chr6 39893554 . T C 68.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.227;DP=116;Dels=0.02;FS=20.576;HaplotypeScore=10.9875;MLEAC=3;MLEAF=0.375;MQ=21.26;MQ0=0;MQRankSum=0.998;QD=0.78;ReadPosRankSum=-0.607;SB=-3.476e-04 GT:AD:DP:GQ:PL 0/1:19,3:22:24:24,0,223 0/1:26,4:31:55:55,0,247 0/0:28,0:28:33:0,33,326 0/1:31,2:33:33:33,0,165 +chr6 41254423 . T C 992.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.728;DP=86;Dels=0.01;FS=4.533;HaplotypeScore=6.8070;MLEAC=4;MLEAF=0.500;MQ=27.96;MQ0=0;MQRankSum=-0.813;QD=11.54;ReadPosRankSum=3.702;SB=-2.997e+00 GT:AD:DP:GQ:PL 0/1:13,10:23:99:180,0,193 0/1:10,13:23:99:273,0,106 0/1:5,16:22:17:392,0,17 0/1:10,7:17:99:190,0,111 +chr6 41621625 rs1056686 G A 41.26 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.589;DB;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.4310;MLEAC=3;MLEAF=0.750;MQ=17.79;MQ0=0;MQRankSum=1.067;QD=8.25;ReadPosRankSum=-1.067;SB=-3.425e+01 GT:AD:DP:GQ:PL 0/0:4,0:5:3:0,3,41 1/1:3,2:5:6:76,6,0 ./. ./. +chr6 41655371 . A G 98.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.208;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1901;MLEAC=3;MLEAF=0.375;MQ=33.49;MQ0=0;MQRankSum=-0.268;QD=1.40;ReadPosRankSum=1.965;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,4:23:60:60,0,404 0/1:20,2:22:7:7,0,420 0/1:21,4:25:73:73,0,560 0/0:9,0:9:12:0,12,133 +chr6 41721725 . T C 114.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.613;DP=88;Dels=0.01;FS=4.819;HaplotypeScore=1.4622;MLEAC=3;MLEAF=0.375;MQ=30.20;MQ0=0;MQRankSum=-2.661;QD=1.59;ReadPosRankSum=0.155;SB=-1.927e-01 GT:AD:DP:GQ:PL 0/0:15,1:16:3:0,3,312 0/1:17,7:24:90:90,0,235 0/1:23,1:24:8:8,0,225 0/1:19,4:23:57:57,0,265 +chr6 41903742 . C A 48.15 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.996;DP=39;Dels=0.03;FS=5.199;HaplotypeScore=8.1445;MLEAC=2;MLEAF=0.250;MQ=24.19;MQ0=0;MQRankSum=-1.011;QD=2.19;ReadPosRankSum=0.389;SB=0.927 GT:AD:DP:GQ:PL 0/0:8,0:8:15:0,15,151 1/1:7,2:9:3:29,3,0 0/1:9,3:12:62:62,0,180 0/0:8,1:9:12:0,12,122 +chr6 42025058 rs6917299 G A 1479.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.302;DB;DP=114;Dels=0.00;FS=5.549;HaplotypeScore=3.0707;MLEAC=5;MLEAF=0.625;MQ=30.63;MQ0=0;MQRankSum=1.548;QD=12.98;ReadPosRankSum=1.805;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:69:824,69,0 0/1:18,10:28:99:312,0,370 0/1:23,11:34:99:253,0,644 0/1:20,7:27:99:136,0,377 +chr6 42044896 . C A 611.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.538;DP=176;Dels=0.00;FS=61.546;HaplotypeScore=7.8403;MLEAC=4;MLEAF=0.500;MQ=32.15;MQ0=0;MQRankSum=-1.742;QD=3.47;ReadPosRankSum=-0.491;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:37,8:45:99:100,0,853 0/1:36,8:44:99:176,0,749 0/1:42,7:49:99:140,0,853 0/1:28,10:38:99:238,0,528 +chr6 42152460 . G T 224.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.471;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.7303;MLEAC=4;MLEAF=0.500;MQ=33.57;MQ0=0;MQRankSum=-1.852;QD=2.96;ReadPosRankSum=0.484;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:44:44,0,335 0/1:12,2:14:33:33,0,291 0/1:20,5:25:99:124,0,518 0/1:13,3:16:66:66,0,366 +chr6 42883669 rs9471958 C T 33.28 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.762;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9060;MLEAC=4;MLEAF=0.500;MQ=24.19;MQ0=0;MQRankSum=1.666;QD=11.09;ReadPosRankSum=0.067;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:39,3,0 0/0:4,0:4:3:0,3,29 1/1:0,1:1:3:36,3,0 0/0:3,0:3:6:0,6,69 +chr6 42997071 . C T 39.54 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.214;DP=25;Dels=0.00;FS=5.611;HaplotypeScore=4.7758;MLEAC=3;MLEAF=0.750;MQ=24.11;MQ0=0;MQRankSum=-0.546;QD=2.33;ReadPosRankSum=1.214;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,2:8:6:67,6,0 ./. 0/1:7,1:9:8:8,0,180 ./. +chr6 43013951 . A C 67.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.295;DP=66;Dels=0.02;FS=12.958;HaplotypeScore=3.8059;MLEAC=3;MLEAF=0.375;MQ=23.01;MQ0=0;MQRankSum=0.556;QD=1.29;ReadPosRankSum=-1.385;SB=0.263 GT:AD:DP:GQ:PL 0/0:13,1:14:21:0,21,238 0/1:13,4:17:51:51,0,201 0/1:17,3:20:12:12,0,174 0/1:11,3:14:47:47,0,123 +chr6 43019408 . A C 291.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.676;DP=325;Dels=0.00;FS=83.398;HaplotypeScore=3.8601;MLEAC=2;MLEAF=0.250;MQ=38.15;MQ0=0;MQRankSum=-4.436;QD=1.78;ReadPosRankSum=1.605;SB=-9.401e-01 GT:AD:DP:GQ:PL 0/1:66,11:77:99:175,0,1759 0/1:75,12:87:99:158,0,1990 0/0:85,4:89:80:0,80,2340 0/0:67,4:71:28:0,28,1704 +chr6 43034802 . T G 413.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.338;DP=195;Dels=0.01;FS=18.594;HaplotypeScore=3.8372;MLEAC=4;MLEAF=0.500;MQ=32.19;MQ0=0;MQRankSum=-4.347;QD=2.12;ReadPosRankSum=0.512;SB=-3.866e-02 GT:AD:DP:GQ:PL 0/1:45,6:51:21:21,0,897 0/1:40,8:48:99:148,0,638 0/1:46,8:54:99:99,0,1006 0/1:31,8:40:99:188,0,447 +chr6 43038072 . G T 66.56 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.352;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=16.9065;MLEAC=3;MLEAF=0.500;MQ=19.09;MQ0=0;MQRankSum=1.055;QD=1.66;ReadPosRankSum=-1.357;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:19:19,0,26 0/1:13,3:16:20:73,0,20 0/1:12,2:14:13:13,0,53 ./. +chr6 43097049 . T A 71.24 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.349;DP=43;Dels=0.05;FS=0.000;HaplotypeScore=1.3921;MLEAC=5;MLEAF=0.833;MQ=15.22;MQ0=0;MQRankSum=3.055;QD=3.24;ReadPosRankSum=0.175;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:6,3:9:9:85,9,0 1/1:10,2:13:3:26,3,0 0/0:8,0:8:3:0,3,25 ./. +chr6 43106476 . T A 56.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.638;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1429;MLEAC=3;MLEAF=0.375;MQ=33.32;MQ0=0;MQRankSum=-4.968;QD=0.81;ReadPosRankSum=4.473;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,5:24:34:34,0,473 0/1:16,7:23:58:58,0,332 0/1:20,3:23:7:7,0,543 0/0:20,4:24:21:0,21,447 +chr6 43163948 . G A 96.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.365;DP=117;Dels=0.00;FS=27.059;HaplotypeScore=11.8029;MLEAC=3;MLEAF=0.375;MQ=29.40;MQ0=0;MQRankSum=-1.013;QD=1.06;ReadPosRankSum=-0.048;SB=-3.989e-01 GT:AD:DP:GQ:PL 0/1:28,3:32:39:39,0,340 0/1:21,3:24:29:29,0,184 0/0:25,1:26:5:0,5,291 0/1:30,4:35:70:70,0,229 +chr6 43166365 . T A 128.10 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.324;DP=306;Dels=0.00;FS=190.782;HaplotypeScore=6.8689;MLEAC=2;MLEAF=0.250;MQ=35.76;MQ0=0;MQRankSum=-2.578;QD=0.88;ReadPosRankSum=-2.293;SB=-2.526e+00 GT:AD:DP:GQ:PL 0/0:76,5:81:43:0,43,2180 0/0:73,6:80:2:0,2,2033 0/1:73,11:84:99:140,0,2084 0/1:56,5:61:28:28,0,1187 +chr6 43167181 . G C 110.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.706;DP=84;Dels=0.02;FS=0.000;HaplotypeScore=3.6945;MLEAC=4;MLEAF=0.500;MQ=31.82;MQ0=0;MQRankSum=-1.688;QD=1.32;ReadPosRankSum=0.919;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:41:41,0,438 0/1:20,3:23:63:63,0,314 0/1:16,2:18:17:17,0,421 0/1:16,3:19:32:32,0,312 +chr6 43171115 . C T 560.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.791;DP=117;Dels=0.00;FS=5.538;HaplotypeScore=1.9784;MLEAC=1;MLEAF=0.125;MQ=38.17;MQ0=0;MQRankSum=0.221;QD=18.70;ReadPosRankSum=0.735;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,102,1363 0/1:13,17:30:99:597,0,345 0/0:34,0:34:93:0,93,1174 0/0:18,0:18:54:0,54,642 +chr6 43174214 . T G 93.29 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.516;DP=117;Dels=0.01;FS=47.020;HaplotypeScore=14.2894;MLEAC=4;MLEAF=0.500;MQ=22.16;MQ0=0;MQRankSum=1.182;QD=0.80;ReadPosRankSum=-1.232;SB=-2.405e+00 GT:AD:DP:GQ:PL 0/1:25,3:28:61:61,0,64 0/1:28,2:30:7:7,0,175 0/1:29,3:32:20:20,0,278 0/1:23,3:26:47:47,0,167 +chr6 43181172 . T C 200.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.911;DP=147;Dels=0.01;FS=35.141;HaplotypeScore=3.6312;MLEAC=3;MLEAF=0.375;MQ=30.22;MQ0=0;MQRankSum=-2.221;QD=1.70;ReadPosRankSum=1.826;SB=0.445 GT:AD:DP:GQ:PL 0/1:30,5:35:72:72,0,738 0/1:34,5:40:23:23,0,612 0/1:33,8:42:99:149,0,655 0/0:28,1:29:31:0,31,661 +chr6 43188673 . A T 39.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.349;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=1.7528;MLEAC=3;MLEAF=0.375;MQ=22.68;MQ0=0;MQRankSum=1.123;QD=1.47;ReadPosRankSum=-1.510;SB=0.507 GT:AD:DP:GQ:PL 0/1:12,1:13:8:8,0,172 0/1:7,2:9:49:49,0,53 0/1:3,1:4:24:24,0,36 0/0:5,0:5:6:0,6,67 +chr6 43274055 . G T 197.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.964;DP=127;Dels=0.01;FS=11.861;HaplotypeScore=1.4360;MLEAC=3;MLEAF=0.375;MQ=33.00;MQ0=0;MQRankSum=-2.909;QD=2.24;ReadPosRankSum=0.734;SB=1.75 GT:AD:DP:GQ:PL 0/1:29,3:32:17:17,0,573 0/1:30,5:35:79:79,0,496 0/0:35,3:38:15:0,15,759 0/1:13,8:21:99:144,0,285 +chr6 43320055 rs75782786 C A 176.48 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.717;DB;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9806;MLEAC=1;MLEAF=0.125;MQ=27.05;MQ0=0;MQRankSum=1.214;QD=13.58;ReadPosRankSum=1.387;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:9:0,9,95 0/1:6,7:13:20:212,0,20 0/0:6,0:6:9:0,9,102 0/0:6,0:6:9:0,9,94 +chr6 43414065 . T G 307.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.795;DP=134;Dels=0.01;FS=147.705;HaplotypeScore=9.6892;MLEAC=4;MLEAF=0.500;MQ=34.49;MQ0=0;MQRankSum=-5.216;QD=2.30;ReadPosRankSum=2.967;SB=-1.156e-02 GT:AD:DP:GQ:PL 0/1:19,6:25:94:94,0,531 0/1:25,9:34:99:131,0,715 0/1:29,9:38:78:78,0,749 0/1:28,8:36:47:47,0,773 +chr6 43414216 rs1214746 T C 117.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.570;DB;DP=48;Dels=0.04;FS=2.691;HaplotypeScore=3.6442;MLEAC=3;MLEAF=0.375;MQ=26.12;MQ0=0;MQRankSum=-2.195;QD=4.04;ReadPosRankSum=0.606;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,1:13:4:4,0,207 1/1:5,10:15:18:157,18,0 0/0:12,2:14:2:0,2,274 0/0:4,0:4:9:0,9,119 +chr6 43416725 . C A 158.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.252;DP=104;Dels=0.01;FS=101.039;HaplotypeScore=16.4982;MLEAC=4;MLEAF=0.500;MQ=27.49;MQ0=0;MQRankSum=-4.115;QD=1.53;ReadPosRankSum=0.577;SB=-2.690e-01 GT:AD:DP:GQ:PL 0/1:20,6:26:10:10,0,335 0/1:22,5:27:36:36,0,277 0/1:22,6:28:46:46,0,392 0/1:15,7:22:99:109,0,161 +chr6 43487767 rs143381942 G A 346.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.192;DB;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.2496;MLEAC=3;MLEAF=0.375;MQ=33.81;MQ0=0;MQRankSum=-2.868;QD=8.26;ReadPosRankSum=0.586;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:30:0,30,385 0/1:6,7:13:99:201,0,192 0/1:9,4:13:98:98,0,293 0/1:12,4:16:91:91,0,328 +chr6 43490485 . T G 95.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.303;DP=51;Dels=0.02;FS=11.137;HaplotypeScore=0.8888;MLEAC=3;MLEAF=0.375;MQ=30.10;MQ0=0;MQRankSum=0.864;QD=2.34;ReadPosRankSum=-0.443;SB=-9.698e-03 GT:AD:DP:GQ:PL 0/0:10,0:10:6:0,6,64 0/1:14,2:16:47:47,0,196 0/1:11,2:13:47:47,0,111 0/1:9,2:11:44:44,0,63 +chr6 43533447 . C T 83.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.646;DP=112;Dels=0.00;FS=24.503;HaplotypeScore=5.8178;MLEAC=3;MLEAF=0.375;MQ=34.40;MQ0=0;MQRankSum=-3.272;QD=1.16;ReadPosRankSum=0.081;SB=-2.748e-02 GT:AD:DP:GQ:PL 0/1:28,3:31:25:25,0,663 0/1:21,3:24:43:43,0,476 0/0:39,1:40:59:0,59,1130 0/1:13,4:17:59:59,0,287 +chr6 43572357 . G T 90.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.971;DP=152;Dels=0.00;FS=19.055;HaplotypeScore=3.6552;MLEAC=3;MLEAF=0.375;MQ=35.91;MQ0=0;MQRankSum=-4.246;QD=0.82;ReadPosRankSum=-0.911;SB=-7.102e-01 GT:AD:DP:GQ:PL 0/1:34,3:37:17:17,0,746 0/1:38,9:47:84:84,0,1037 0/0:39,3:42:5:0,5,953 0/1:22,4:26:31:31,0,589 +chr6 43591673 . G C 283.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.937;DP=273;Dels=0.00;FS=170.515;HaplotypeScore=10.4545;MLEAC=2;MLEAF=0.250;MQ=36.69;MQ0=0;MQRankSum=-3.475;QD=2.23;ReadPosRankSum=-0.231;SB=-9.810e-01 GT:AD:DP:GQ:PL 0/0:64,4:68:45:0,45,1850 0/1:54,8:62:89:89,0,1485 0/0:74,4:78:47:0,47,2126 0/1:52,12:65:99:236,0,1434 +chr6 43749778 . T A 39.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.885;DP=93;Dels=0.00;FS=89.527;HaplotypeScore=7.5859;MLEAC=2;MLEAF=0.250;MQ=34.39;MQ0=0;MQRankSum=-3.263;QD=0.85;ReadPosRankSum=0.381;SB=-2.200e+00 GT:AD:DP:GQ:PL 0/1:17,3:20:20:20,0,449 0/1:21,6:27:60:60,0,585 0/0:21,3:24:3:0,3,611 0/0:21,1:22:31:0,31,620 +chr6 44116785 rs35937558 T TC 165.95 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.558;DB;DP=61;FS=8.808;HaplotypeScore=7.0234;MLEAC=1;MLEAF=0.125;MQ=30.92;MQ0=0;MQRankSum=-1.100;QD=13.83;RPA=2,3;RU=C;ReadPosRankSum=-0.175;SB=-4.100e+01;STR GT:AD:DP:GQ:PL 0/0:19,0:18:48:0,48,649 0/1:6,6:10:94:211,0,94 0/0:13,0:13:36:0,36,485 0/0:13,1:10:30:0,30,402 +chr6 44140818 rs3813500 C G 419.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.916;DB;DP=68;Dels=0.04;FS=2.295;HaplotypeScore=2.2218;MLEAC=4;MLEAF=0.500;MQ=31.84;MQ0=0;MQRankSum=-0.748;QD=6.17;ReadPosRankSum=1.054;SB=-1.569e+02 GT:AD:DP:GQ:PL 0/1:8,2:10:46:46,0,243 0/1:10,4:14:99:115,0,226 0/1:11,4:15:46:46,0,270 0/1:17,9:26:99:255,0,430 +chr6 44197070 . T A 462.78 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.856;DP=67;Dels=0.03;FS=6.623;HaplotypeScore=1.5348;MLEAC=5;MLEAF=0.625;MQ=28.64;MQ0=0;MQRankSum=-0.658;QD=6.91;ReadPosRankSum=1.564;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,4:10:17:116,0,17 0/1:16,8:25:99:165,0,101 1/1:9,6:15:18:177,18,0 0/1:12,2:15:50:50,0,116 +chr6 44216544 rs112518852 GT G 375.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.679;DB;DP=123;FS=2.162;HaplotypeScore=34.6424;MLEAC=4;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=0.699;QD=3.05;RPA=11,10;RU=T;ReadPosRankSum=2.697;SB=-2.000e+01;STR GT:AD:DP:GQ:PL 0/1:29,2:27:78:78,0,116 0/1:28,9:29:87:296,0,87 0/1:28,2:20:41:41,0,180 0/1:14,0:10:12:12,0,97 +chr6 44224137 . G T 53.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.296;DP=163;Dels=0.01;FS=68.188;HaplotypeScore=21.4971;MLEAC=1;MLEAF=0.125;MQ=29.53;MQ0=0;MQRankSum=-4.458;QD=1.83;ReadPosRankSum=0.708;SB=-6.727e+00 GT:AD:DP:GQ:PL 0/1:22,6:28:89:89,0,528 0/0:44,7:51:23:0,23,921 0/0:40,3:43:16:0,16,911 0/0:32,7:39:55:0,55,841 +chr6 44228162 rs2233437 G A 237.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.826;DB;DP=49;Dels=0.02;FS=1.597;HaplotypeScore=3.2647;MLEAC=3;MLEAF=0.375;MQ=25.97;MQ0=0;MQRankSum=0.663;QD=5.95;ReadPosRankSum=0.799;SB=-8.778e+01 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,209 0/1:10,6:16:99:114,0,142 0/1:12,3:15:83:83,0,121 0/1:6,3:9:84:84,0,119 +chr6 44250165 rs516582 A G 3063.61 . AC=6;AF=0.750;AN=8;BaseQRankSum=6.565;DB;DP=132;Dels=0.00;FS=75.842;HaplotypeScore=13.6927;MLEAC=7;MLEAF=0.875;MQ=30.48;MQ0=0;MQRankSum=3.931;QD=23.21;ReadPosRankSum=1.097;SB=-5.956e+02 GT:AD:DP:GQ:PL 0/1:11,26:37:2:882,0,2 1/1:10,22:32:7:706,7,0 1/1:9,33:42:75:1113,75,0 0/1:5,16:21:17:405,0,17 +chr6 44310854 rs10948132 G A 291.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.602;DB;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.4078;MLEAC=1;MLEAF=0.125;MQ=38.60;MQ0=0;MQRankSum=-1.432;QD=10.43;ReadPosRankSum=0.635;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:17,11:28:99:328,0,574 0/0:34,0:34:99:0,99,1313 0/0:48,0:48:99:0,135,1784 0/0:25,0:25:63:0,63,847 +chr6 44527870 rs1322658 A G 44.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.3670;MLEAC=4;MLEAF=1.00;MQ=20.59;MQ0=0;MQRankSum=0.736;QD=8.80;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:41,3,0 ./. 1/1:1,1:2:3:36,3,0 ./. +chr6 45922849 rs3734206 C T 3958.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.113;DB;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.4916;MLEAC=8;MLEAF=1.00;MQ=40.87;MQ0=0;MQRankSum=1.235;QD=39.58;ReadPosRankSum=1.419;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,24:25:39:955,39,0 1/1:1,19:20:57:802,57,0 1/1:1,27:28:81:1127,81,0 1/1:1,26:27:78:1074,78,0 +chr6 46048000 rs1416165 T C 2912.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.455;DB;DP=201;Dels=0.00;FS=6.580;HaplotypeScore=1.5488;MLEAC=4;MLEAF=0.500;MQ=40.00;MQ0=0;MQRankSum=-8.158;QD=14.49;ReadPosRankSum=0.706;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:31,27:58:99:857,0,1116 0/1:20,25:45:99:839,0,708 0/1:41,29:70:99:971,0,1345 0/1:18,10:28:99:288,0,618 +chr6 46111060 . C G 204.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.757;DP=195;Dels=0.00;FS=35.683;HaplotypeScore=3.6456;MLEAC=2;MLEAF=0.250;MQ=35.35;MQ0=0;MQRankSum=-2.331;QD=2.46;ReadPosRankSum=1.400;SB=-1.487e-01 GT:AD:DP:GQ:PL 0/1:46,10:56:99:176,0,1126 0/0:45,3:48:21:0,21,1177 0/0:60,4:64:30:0,30,1470 0/1:22,5:27:70:70,0,405 +chr6 46133127 . G T 42.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.203;DP=122;Dels=0.01;FS=2.336;HaplotypeScore=8.5715;MLEAC=2;MLEAF=0.250;MQ=31.31;MQ0=0;MQRankSum=-2.131;QD=1.07;ReadPosRankSum=-2.112;SB=-1.803e+01 GT:AD:DP:GQ:PL 0/1:21,3:24:28:28,0,218 0/0:39,0:41:48:0,48,547 0/0:37,1:40:16:0,16,444 0/1:12,3:16:56:56,0,185 +chr6 46656787 rs148061772 G A 52.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.765;DB;DP=45;Dels=0.00;FS=31.652;HaplotypeScore=3.7560;MLEAC=3;MLEAF=0.375;MQ=25.75;MQ0=0;MQRankSum=-1.951;QD=1.45;ReadPosRankSum=-0.640;SB=-3.533e-01 GT:AD:DP:GQ:PL 0/1:7,3:10:14:14,0,122 0/0:9,0:9:15:0,15,184 0/1:12,5:17:43:43,0,234 0/1:6,3:9:38:38,0,107 +chr6 46976717 . A T 149.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.331;DP=101;Dels=0.00;FS=103.081;HaplotypeScore=4.7314;MLEAC=4;MLEAF=0.500;MQ=32.46;MQ0=0;MQRankSum=-2.387;QD=1.48;ReadPosRankSum=2.747;SB=-2.780e+00 GT:AD:DP:GQ:PL 0/1:22,3:25:39:39,0,522 0/1:28,4:32:11:11,0,567 0/1:25,4:29:54:54,0,609 0/1:11,4:15:88:88,0,178 +chr6 47252104 . C G 213.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.255;DP=171;Dels=0.01;FS=51.222;HaplotypeScore=3.1684;MLEAC=4;MLEAF=0.500;MQ=35.41;MQ0=0;MQRankSum=-1.208;QD=1.25;ReadPosRankSum=1.627;SB=-1.191e-02 GT:AD:DP:GQ:PL 0/1:38,4:42:50:50,0,999 0/1:39,5:44:48:48,0,809 0/1:40,7:47:86:86,0,864 0/1:33,4:37:72:72,0,582 +chr6 47646842 rs6907125 A G 3650.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=4.025;DB;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=3.0712;MLEAC=8;MLEAF=1.00;MQ=32.80;MQ0=0;MQRankSum=1.911;QD=29.20;ReadPosRankSum=2.879;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:5,27:32:31:880,31,0 1/1:5,27:32:35:910,35,0 1/1:3,33:36:74:1207,74,0 0/1:4,19:23:4:653,0,4 +chr6 47847683 rs9367307 A T 411.30 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.488;DB;DP=87;Dels=0.03;FS=0.000;HaplotypeScore=1.7771;MLEAC=4;MLEAF=0.500;MQ=25.69;MQ0=0;MQRankSum=-0.299;QD=6.23;ReadPosRankSum=-0.836;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:39:442,39,0 0/0:21,0:21:39:0,39,404 0/1:27,3:30:3:3,0,485 0/1:13,2:15:13:13,0,206 +chr6 48181923 . A G 122.96 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.157;DP=169;Dels=0.00;FS=2.666;HaplotypeScore=2.1683;MLEAC=4;MLEAF=0.500;MQ=14.65;MQ0=0;MQRankSum=2.293;QD=0.73;ReadPosRankSum=0.505;SB=-6.899e+01 GT:AD:DP:GQ:PL 0/1:40,2:42:21:21,0,95 0/1:39,3:42:41:41,0,69 0/1:45,5:50:93:93,0,109 0/1:33,2:35:10:10,0,156 +chr6 49587001 . T G 147.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.902;DP=187;Dels=0.00;FS=8.882;HaplotypeScore=2.3794;MLEAC=2;MLEAF=0.250;MQ=35.86;MQ0=0;MQRankSum=-2.630;QD=1.87;ReadPosRankSum=1.352;SB=-6.503e-01 GT:AD:DP:GQ:PL 0/1:39,7:46:99:111,0,889 0/0:48,2:50:37:0,37,940 0/0:55,3:58:20:0,20,1248 0/1:28,5:33:78:78,0,864 +chr6 49700840 rs11343694 GT G 443.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.194;DB;DP=77;FS=0.000;HaplotypeScore=18.8826;MLEAC=4;MLEAF=0.500;MQ=23.39;MQ0=0;MQRankSum=-1.868;QD=7.78;RPA=9,8;RU=T;ReadPosRankSum=2.515;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:9,10:16:9:239,9,0 0/0:20,0:8:6:0,6,135 0/1:22,9:21:99:236,0,197 0/1:5,2:3:23:23,0,48 +chr6 49754612 . T C 107.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.461;DP=187;Dels=0.00;FS=78.483;HaplotypeScore=5.8921;MLEAC=3;MLEAF=0.375;MQ=18.70;MQ0=0;MQRankSum=1.361;QD=0.77;ReadPosRankSum=-0.103;SB=0.284 GT:AD:DP:GQ:PL 0/1:37,9:46:99:116,0,368 0/0:43,5:48:14:0,14,392 0/1:50,3:53:28:28,0,454 0/1:35,4:40:4:4,0,327 +chr6 49914048 rs75455555 G A 605.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.760;DB;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=0.7363;MLEAC=3;MLEAF=0.375;MQ=37.12;MQ0=0;MQRankSum=-3.109;QD=11.65;ReadPosRankSum=0.275;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,0:34:99:0,99,1330 0/1:14,10:24:99:318,0,518 0/1:11,9:20:99:265,0,340 0/1:4,2:6:34:66,0,34 +chr6 51774324 . C A 36.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.705;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=16.8467;MLEAC=3;MLEAF=0.375;MQ=18.22;MQ0=0;MQRankSum=1.480;QD=0.64;ReadPosRankSum=-1.812;SB=-9.606e-03 GT:AD:DP:GQ:PL 0/1:18,2:20:18:18,0,169 0/1:18,3:21:23:23,0,48 0/1:14,3:17:37:37,0,54 0/0:11,0:11:3:0,3,39 +chr6 52142547 . A G 46.43 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.790;DP=32;Dels=0.03;FS=4.771;HaplotypeScore=10.1560;MLEAC=4;MLEAF=0.667;MQ=16.11;MQ0=0;MQRankSum=-1.030;QD=1.66;ReadPosRankSum=1.573;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,2:8:13:13,0,85 1/1:7,2:9:3:31,3,0 0/1:5,6:11:33:41,0,33 ./. +chr6 52643104 . A G 100.85 . AC=5;AF=0.833;AN=6;BaseQRankSum=-3.043;DP=94;Dels=0.02;FS=18.623;HaplotypeScore=4.8175;MLEAC=5;MLEAF=0.833;MQ=11.85;MQ0=0;MQRankSum=2.331;QD=1.13;ReadPosRankSum=-0.285;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:28,4:32:9:79,9,0 0/1:23,5:28:17:36,0,17 1/1:25,2:27:3:25,3,0 ./. +chr6 52677187 . A G 132.92 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.410;DP=111;Dels=0.01;FS=24.864;HaplotypeScore=24.8589;MLEAC=4;MLEAF=0.500;MQ=13.53;MQ0=0;MQRankSum=2.241;QD=1.20;ReadPosRankSum=2.775;SB=1.02 GT:AD:DP:GQ:PL 0/1:22,6:28:17:63,0,17 0/1:28,6:35:11:59,0,11 0/1:25,5:31:17:36,0,17 0/1:14,2:16:17:17,0,28 +chr6 52714886 rs147168388 A G 41.99 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.134;DB;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.3943;MLEAC=2;MLEAF=0.500;MQ=16.45;MQ0=0;MQRankSum=0.600;QD=4.67;ReadPosRankSum=0.289;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,73 1/1:5,4:9:9:79,9,0 ./. ./. +chr6 52770508 . A C 66.25 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.694;DP=52;Dels=0.02;FS=26.975;HaplotypeScore=13.3210;MLEAC=5;MLEAF=0.833;MQ=16.57;MQ0=0;MQRankSum=2.409;QD=1.79;ReadPosRankSum=0.694;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,1:9:3:24,3,0 1/1:12,6:18:3:30,3,0 ./. 0/1:5,3:9:34:50,0,34 +chr6 52858838 rs45504201 G A 348.54 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.786;DB;DP=61;Dels=0.02;FS=2.377;HaplotypeScore=2.1707;MLEAC=3;MLEAF=0.375;MQ=33.17;MQ0=0;MQRankSum=-1.132;QD=8.94;ReadPosRankSum=-0.200;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,0:22:57:0,57,781 0/1:9,7:16:99:220,0,223 0/1:8,1:9:9:9,0,138 0/1:8,5:13:99:162,0,136 +chr6 52878637 rs2297211 T C 2062.67 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.075;DB;DP=84;Dels=0.01;FS=3.556;HaplotypeScore=2.5634;MLEAC=7;MLEAF=0.875;MQ=34.54;MQ0=0;MQRankSum=-0.586;QD=24.56;ReadPosRankSum=1.254;SB=-9.920e+02 GT:AD:DP:GQ:PL 0/1:2,18:20:2:608,0,2 0/1:15,10:25:99:274,0,424 1/1:4,21:25:40:774,40,0 1/1:1,12:13:36:450,36,0 +chr6 53219673 rs9349666 G A 774.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.516;DB;DP=77;Dels=0.00;FS=1.643;HaplotypeScore=1.4093;MLEAC=3;MLEAF=0.375;MQ=35.70;MQ0=0;MQRankSum=-1.177;QD=15.20;ReadPosRankSum=1.407;SB=-1.002e+02 GT:AD:DP:GQ:PL 0/0:26,0:26:60:0,60,803 0/1:1,10:11:8:329,0,8 0/1:8,13:21:99:425,0,232 0/1:16,3:19:64:64,0,478 +chr6 53365016 . A T 59.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.382;DP=223;Dels=0.00;FS=82.317;HaplotypeScore=8.7791;MLEAC=3;MLEAF=0.375;MQ=31.56;MQ0=0;MQRankSum=-1.518;QD=0.38;ReadPosRankSum=-2.678;SB=2.45 GT:AD:DP:GQ:PL 0/1:48,4:52:12:12,0,1127 0/1:59,7:66:69:69,0,1228 0/0:63,3:66:97:0,97,1633 0/1:34,5:39:21:21,0,597 +chr6 53517228 rs41273882 A C 44.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.858;DB;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4426;MLEAC=1;MLEAF=0.125;MQ=35.58;MQ0=0;MQRankSum=-0.445;QD=3.21;ReadPosRankSum=-0.127;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:42:0,42,544 0/1:11,3:14:81:81,0,315 0/0:22,0:22:60:0,60,768 0/0:16,0:16:39:0,39,477 +chr6 54191970 rs1848440 T A 477.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.438;DB;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.6627;MLEAC=4;MLEAF=0.500;MQ=26.41;MQ0=0;MQRankSum=-2.666;QD=7.24;ReadPosRankSum=0.391;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,102,1219 1/1:2,19:21:30:303,30,0 0/1:22,11:33:99:161,0,438 0/1:8,4:12:62:62,0,138 +chr6 54350422 rs565623 G A 702.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.157;DB;DP=73;Dels=0.01;FS=0.948;HaplotypeScore=3.1014;MLEAC=4;MLEAF=0.500;MQ=32.23;MQ0=0;MQRankSum=0.303;QD=14.95;ReadPosRankSum=1.602;SB=-3.406e+02 GT:AD:DP:GQ:PL 1/1:1,13:14:36:464,36,0 0/0:26,0:26:57:0,57,723 0/1:15,7:22:99:182,0,315 0/1:6,4:10:83:105,0,83 +chr6 54489531 . T G 140.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.574;DP=157;Dels=0.00;FS=6.638;HaplotypeScore=4.0769;MLEAC=4;MLEAF=0.500;MQ=21.72;MQ0=0;MQRankSum=3.452;QD=0.89;ReadPosRankSum=-0.168;SB=-1.502e+00 GT:AD:DP:GQ:PL 0/1:42,1:44:3:3,0,210 0/1:42,3:45:33:33,0,462 0/1:36,3:39:13:13,0,266 0/1:23,6:29:78:132,0,78 +chr6 55304454 . T A 53.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.075;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.2497;MLEAC=2;MLEAF=0.250;MQ=39.68;MQ0=0;MQRankSum=-1.975;QD=1.54;ReadPosRankSum=-0.842;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:31,0:31:84:0,84,1165 0/0:36,0:36:87:0,87,1119 0/1:21,4:25:78:78,0,560 0/1:9,1:10:17:17,0,153 +chr6 56371698 rs9296848 A G 1060.74 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.062;DB;DP=77;Dels=0.00;FS=3.655;HaplotypeScore=6.1162;MLEAC=7;MLEAF=0.875;MQ=29.39;MQ0=0;MQRankSum=1.554;QD=13.78;ReadPosRankSum=-0.942;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:9,10:20:27:351,27,0 0/1:25,10:35:99:310,0,520 1/1:5,9:14:24:297,24,0 1/1:4,4:8:12:147,12,0 +chr6 56422355 . T C,G 113.70 . AC=2,2;AF=0.250,0.250;AN=8;BaseQRankSum=-0.615;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=14.3997;MLEAC=2,2;MLEAF=0.250,0.250;MQ=26.40;MQ0=0;MQRankSum=-0.139;QD=2.32;ReadPosRankSum=0.099;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,2,2:15:22:33,0,89,22,74,113 0/2:14,0,2:16:25:25,34,116,0,82,79 1/2:9,5,3:17:36:137,36,61,67,0,97 0/0:5,0,0:5:6:0,6,64,6,64,64 +chr6 56433311 . C A 44.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.434;DP=262;Dels=0.00;FS=39.500;HaplotypeScore=3.4218;MLEAC=2;MLEAF=0.250;MQ=33.61;MQ0=0;MQRankSum=-5.298;QD=0.40;ReadPosRankSum=-2.361;SB=-9.827e-01 GT:AD:DP:GQ:PL 0/0:65,4:69:40:0,40,1716 0/0:75,6:81:54:0,54,2273 0/1:72,9:81:22:22,0,1814 0/1:26,5:31:64:64,0,729 +chr6 56459082 rs116762675 A C 443.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.600;DB;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=1.4939;MLEAC=1;MLEAF=0.125;MQ=40.27;MQ0=0;MQRankSum=-1.575;QD=9.06;ReadPosRankSum=-1.216;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,16:49:99:480,0,1096 0/0:45,0:45:99:0,132,1771 0/0:42,0:42:99:0,120,1617 0/0:44,0:45:99:0,129,1702 +chr6 56474219 rs191948657 T A 135.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.406;DB;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.1933;MLEAC=1;MLEAF=0.125;MQ=29.21;MQ0=0;MQRankSum=0.541;QD=4.39;ReadPosRankSum=0.273;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,8:31:99:172,0,490 0/0:42,0:42:99:0,102,1124 0/0:39,0:39:96:0,96,1024 0/0:24,0:24:48:0,48,489 +chr6 56499189 rs6941626 T C 97.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.585;DB;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=1.1109;MLEAC=1;MLEAF=0.125;MQ=36.98;MQ0=0;MQRankSum=-1.974;QD=3.63;ReadPosRankSum=0.164;SB=-6.012e+00 GT:AD:DP:GQ:PL 0/1:21,6:27:99:134,0,746 0/0:31,0:31:90:0,90,1214 0/0:38,0:38:99:0,105,1386 0/0:26,0:26:69:0,69,837 +chr6 56965418 rs184714318 G A 582.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.566;DB;DP=152;Dels=0.01;FS=8.808;HaplotypeScore=2.8896;MLEAC=3;MLEAF=0.375;MQ=38.11;MQ0=0;MQRankSum=-3.797;QD=5.35;ReadPosRankSum=2.019;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,117,1588 0/1:24,11:35:99:322,0,804 0/1:39,8:47:99:158,0,1286 0/1:19,6:25:99:146,0,575 +chr6 57246969 rs4256440 G A 684.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.727;DB;DP=196;Dels=0.00;FS=3.184;HaplotypeScore=1.7411;MLEAC=4;MLEAF=0.500;MQ=31.18;MQ0=0;MQRankSum=-5.034;QD=3.49;ReadPosRankSum=-1.878;SB=-2.324e+02 GT:AD:DP:GQ:PL 0/1:38,13:51:99:230,0,1104 0/1:53,14:67:99:247,0,1445 0/1:46,15:61:99:215,0,1250 0/1:14,3:17:35:35,0,303 +chr6 57466969 rs12212129 A G 142.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.158;DB;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7487;MLEAC=3;MLEAF=0.375;MQ=38.46;MQ0=0;MQRankSum=-3.089;QD=1.55;ReadPosRankSum=-0.230;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,3:32:12:12,0,995 0/1:25,4:29:42:42,0,839 0/1:25,6:31:99:131,0,866 0/0:7,0:7:21:0,21,289 +chr6 57511975 rs6914572 G C 102.21 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.754;DB;DP=7;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=26.12;MQ0=0;MQRankSum=1.300;QD=25.55;ReadPosRankSum=1.300;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,4:4:12:139,12,0 0/0:3,0:3:3:0,3,33 +chr6 58778922 rs6651011 C A 62.67 . AC=6;AF=1.00;AN=6;DB;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=11.30;MQ0=0;QD=2.09;SB=-2.443e+01 GT:AD:DP:GQ:PL 1/1:1,5:6:3:26,3,0 1/1:0,12:12:3:25,3,0 1/1:0,12:12:6:47,6,0 ./. +chr6 63257354 rs9446610 C T 539.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.297;DB;DP=124;Dels=0.01;FS=5.407;HaplotypeScore=3.7763;MLEAC=4;MLEAF=0.500;MQ=28.62;MQ0=0;MQRankSum=-0.379;QD=4.35;ReadPosRankSum=1.781;SB=-1.790e+02 GT:AD:DP:GQ:PL 0/1:21,8:29:99:151,0,333 0/1:21,5:26:70:70,0,555 0/1:25,10:35:99:229,0,535 0/1:24,9:33:99:132,0,368 +chr6 70423563 . A C 35.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.410;DP=82;Dels=0.00;FS=36.554;HaplotypeScore=17.1432;MLEAC=2;MLEAF=0.250;MQ=26.53;MQ0=0;MQRankSum=-1.362;QD=0.87;ReadPosRankSum=0.941;SB=1.27 GT:AD:DP:GQ:PL 0/0:23,0:23:45:0,45,508 0/0:17,1:18:21:0,21,203 0/1:21,5:28:33:33,0,321 0/1:11,2:13:44:44,0,93 +chr6 70976541 . G C 106.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.742;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.9961;MLEAC=3;MLEAF=0.375;MQ=35.04;MQ0=0;MQRankSum=-2.131;QD=0.89;ReadPosRankSum=0.053;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:40,5:45:68:68,0,675 0/1:32,3:35:35:35,0,590 0/1:36,4:40:46:46,0,604 0/0:6,0:6:9:0,9,114 +chr6 71236324 . G A 193.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.433;DP=141;Dels=0.04;FS=53.251;HaplotypeScore=11.9852;MLEAC=2;MLEAF=0.250;MQ=29.70;MQ0=0;MQRankSum=-4.523;QD=2.13;ReadPosRankSum=4.238;SB=-7.629e-01 GT:AD:DP:GQ:PL 0/0:37,4:41:18:0,18,788 0/1:33,9:42:99:134,0,551 0/1:36,11:47:99:101,0,742 0/0:6,0:6:12:0,12,144 +chr6 71266425 . A G 69.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.620;DP=97;Dels=0.02;FS=0.000;HaplotypeScore=1.4564;MLEAC=3;MLEAF=0.375;MQ=31.79;MQ0=0;MQRankSum=0.514;QD=1.02;ReadPosRankSum=1.844;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,2:25:14:14,0,399 0/1:30,4:34:76:76,0,535 0/0:26,1:27:26:0,26,700 0/1:8,1:9:22:22,0,83 +chr6 71874977 . C T 123.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.019;DP=104;Dels=0.01;FS=7.958;HaplotypeScore=4.9639;MLEAC=2;MLEAF=0.250;MQ=27.06;MQ0=0;MQRankSum=0.755;QD=2.69;ReadPosRankSum=-1.440;SB=-1.252e+01 GT:AD:DP:GQ:PL 0/0:24,1:25:21:0,21,452 0/0:31,2:33:29:0,29,512 0/1:25,4:29:97:97,0,310 0/1:13,3:16:68:68,0,223 +chr6 72011644 . A C 160.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.069;DP=171;Dels=0.00;FS=56.234;HaplotypeScore=10.0048;MLEAC=3;MLEAF=0.375;MQ=34.49;MQ0=0;MQRankSum=-3.628;QD=1.13;ReadPosRankSum=0.699;SB=0.991 GT:AD:DP:GQ:PL 0/1:33,6:39:48:48,0,887 0/1:42,8:50:99:119,0,924 0/1:48,5:53:37:37,0,1260 0/0:28,1:29:27:0,27,772 +chr6 72596945 . A T 57.07 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.813;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.2170;MLEAC=2;MLEAF=0.250;MQ=31.12;MQ0=0;MQRankSum=-1.447;QD=1.14;ReadPosRankSum=-0.498;SB=0.324 GT:AD:DP:GQ:PL 0/0:17,1:18:12:0,12,415 0/0:21,1:22:23:0,23,528 0/1:21,2:23:3:3,0,436 0/1:22,5:27:91:91,0,460 +chr6 72957768 . A C 65.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.870;DP=168;Dels=0.03;FS=154.520;HaplotypeScore=19.3385;MLEAC=3;MLEAF=0.375;MQ=24.31;MQ0=0;MQRankSum=-1.519;QD=0.43;ReadPosRankSum=0.471;SB=5.34 GT:AD:DP:GQ:PL 0/1:39,8:47:17:17,0,592 0/1:45,4:49:21:21,0,695 0/1:45,8:54:71:71,0,913 0/0:13,0:13:24:0,24,229 +chr6 72957796 . A G 189.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.641;DP=225;Dels=0.01;FS=94.106;HaplotypeScore=14.7092;MLEAC=2;MLEAF=0.250;MQ=28.32;MQ0=0;MQRankSum=-1.057;QD=1.45;ReadPosRankSum=0.855;SB=2.56 GT:AD:DP:GQ:PL 0/1:55,7:63:82:82,0,695 0/1:58,9:68:99:149,0,709 0/0:70,3:75:40:0,40,878 0/0:16,1:17:12:0,12,126 +chr6 73765051 . A G 80.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.197;DP=189;Dels=0.01;FS=22.305;HaplotypeScore=10.9218;MLEAC=2;MLEAF=0.250;MQ=17.22;MQ0=0;MQRankSum=1.269;QD=0.82;ReadPosRankSum=-0.275;SB=-5.523e+00 GT:AD:DP:GQ:PL 0/0:47,1:49:27:0,27,308 0/1:42,5:47:66:66,0,187 0/1:46,4:51:56:56,0,164 0/0:41,0:41:18:0,18,229 +chr6 73830423 rs1891404 A G 220.16 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.747;DB;DP=9;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=30.22;MQ0=0;MQRankSum=0.747;QD=24.46;ReadPosRankSum=-0.747;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:12:155,12,0 1/1:0,1:1:3:24,3,0 1/1:0,1:1:3:37,3,0 1/1:1,1:2:3:41,3,0 +chr6 74001064 rs10455092 C A 396.42 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.036;DB;DP=24;Dels=0.00;FS=3.680;HaplotypeScore=0.6651;MLEAC=5;MLEAF=0.625;MQ=36.13;MQ0=0;MQRankSum=-2.949;QD=23.32;ReadPosRankSum=0.320;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,6:7:18:218,18,0 0/0:7,0:7:18:0,18,258 1/1:0,4:4:12:161,12,0 0/1:3,2:6:68:68,0,75 +chr6 74002593 . G T 39.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.828;DP=93;Dels=0.01;FS=12.856;HaplotypeScore=6.3616;MLEAC=3;MLEAF=0.375;MQ=22.94;MQ0=0;MQRankSum=-0.029;QD=0.50;ReadPosRankSum=1.024;SB=2.11 GT:AD:DP:GQ:PL 0/1:17,5:22:48:48,0,121 0/1:28,2:32:30:30,0,225 0/1:20,3:25:1:1,0,149 0/0:13,0:13:9:0,9,109 +chr6 74063579 . G A 46.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.248;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.2866;MLEAC=2;MLEAF=0.250;MQ=29.83;MQ0=0;MQRankSum=-1.756;QD=1.18;ReadPosRankSum=-1.066;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,1:19:9:0,9,358 0/1:17,4:21:76:76,0,359 0/0:16,1:17:0:0,0,255 0/1:16,2:18:7:7,0,318 +chr6 74063792 . G T 62.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.280;DP=143;Dels=0.01;FS=22.606;HaplotypeScore=4.6589;MLEAC=1;MLEAF=0.125;MQ=34.06;MQ0=0;MQRankSum=-0.474;QD=0.85;ReadPosRankSum=-0.546;SB=-5.143e+00 GT:AD:DP:GQ:PL 0/0:33,2:35:8:0,8,662 0/0:32,1:33:35:0,35,733 0/1:35,2:37:1:1,0,707 0/1:32,5:37:97:97,0,567 +chr6 74495257 rs6453700 A G 1354.30 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.636;DB;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.4666;MLEAC=8;MLEAF=1.00;MQ=41.04;MQ0=0;MQRankSum=1.444;QD=35.64;ReadPosRankSum=1.444;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,16:17:45:643,45,0 1/1:1,9:10:27:374,27,0 1/1:0,8:8:21:294,21,0 1/1:1,2:3:6:82,6,0 +chr6 75848099 . G T 46.46 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.148;DP=157;Dels=0.02;FS=33.824;HaplotypeScore=3.3200;MLEAC=3;MLEAF=0.375;MQ=30.18;MQ0=0;MQRankSum=-5.342;QD=0.32;ReadPosRankSum=0.775;SB=-7.377e-02 GT:AD:DP:GQ:PL 0/1:35,5:40:61:61,0,760 0/1:46,6:53:17:17,0,1064 0/1:41,7:48:11:11,0,769 0/0:9,4:13:21:0,21,251 +chr6 75857572 . T A 475.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.118;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.7871;MLEAC=4;MLEAF=0.500;MQ=32.70;MQ0=0;MQRankSum=-4.306;QD=4.14;ReadPosRankSum=4.184;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,7:29:99:149,0,293 0/1:28,7:35:99:111,0,567 0/1:33,10:43:99:164,0,802 0/1:4,4:8:54:94,0,54 +chr6 76386712 rs145045416 GT G 133.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.798;DB;DP=39;FS=0.000;HaplotypeScore=7.1074;MLEAC=2;MLEAF=0.250;MQ=26.89;MQ0=0;MQRankSum=0.858;QD=6.08;RPA=9,8;RU=T;ReadPosRankSum=1.466;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:9,3:12:76:76,0,102 0/1:4,5:7:72:108,0,72 0/0:13,0:11:30:0,30,289 0/0:3,0:3:9:0,9,93 +chr6 79918367 . T G 155.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.966;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.7585;MLEAC=4;MLEAF=0.500;MQ=26.65;MQ0=0;MQRankSum=1.249;QD=2.23;ReadPosRankSum=0.778;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,1:19:13:13,0,88 0/1:18,3:21:63:79,0,63 0/1:18,4:23:73:87,0,73 0/1:6,1:7:19:19,0,54 +chr6 79944096 rs3076135 C CAG 1230.11 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.719;DB;DP=56;FS=0.000;HaplotypeScore=15.1882;MLEAC=5;MLEAF=0.625;MQ=23.75;MQ0=0;MQRankSum=0.488;QD=21.97;RPA=4,5;RU=AG;ReadPosRankSum=-1.762;SB=-9.200e+01;STR GT:AD:DP:GQ:PL 0/1:3,13:12:57:379,0,57 0/1:4,11:12:57:380,0,57 0/1:9,2:8:3:207,0,3 1/1:6,7:8:21:317,21,0 +chr6 80228695 . C G 189.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.433;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.6734;MLEAC=3;MLEAF=0.375;MQ=33.25;MQ0=0;MQRankSum=-4.175;QD=2.46;ReadPosRankSum=3.474;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:32,2:34:12:0,12,690 0/1:30,7:37:92:92,0,860 0/1:27,6:33:95:95,0,570 0/1:5,2:7:45:45,0,82 +chr6 80406159 . G A 149.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.025;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.4068;MLEAC=3;MLEAF=0.375;MQ=30.16;MQ0=0;MQRankSum=-3.190;QD=2.40;ReadPosRankSum=3.510;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,5:21:99:100,0,218 0/1:25,4:29:76:76,0,297 0/0:32,2:34:3:0,3,448 0/1:9,3:12:14:14,0,117 +chr6 80673949 rs4141548 C G 75.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DB;DP=9;Dels=0.00;FS=3.680;HaplotypeScore=0.6651;MLEAC=4;MLEAF=1.00;MQ=21.39;MQ0=0;MQRankSum=1.231;QD=10.75;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:71,6,0 1/1:1,1:3:3:38,3,0 ./. ./. +chr6 85466286 rs215939 A C 241.79 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.262;DB;DP=11;Dels=0.00;FS=12.632;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=31.30;MQ0=0;MQRankSum=1.708;QD=21.98;ReadPosRankSum=-0.382;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:9:122,9,0 0/1:1,3:4:27:82,0,27 1/1:0,1:1:3:41,3,0 1/1:1,1:2:3:38,3,0 +chr6 87183398 rs4707286 C T 91.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.351;DB;DP=52;Dels=0.02;FS=9.331;HaplotypeScore=3.9021;MLEAC=3;MLEAF=0.375;MQ=17.65;MQ0=0;MQRankSum=-1.867;QD=3.81;ReadPosRankSum=0.132;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:9:103,9,0 0/1:8,6:14:35:35,0,60 0/0:10,3:13:15:0,15,140 0/0:10,4:14:15:0,15,154 +chr6 88107770 rs926946 C T 42.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=18.44;MQ0=0;MQRankSum=1.231;QD=8.40;ReadPosRankSum=-1.231;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:41,3,0 ./. ./. 1/1:2,1:3:3:34,3,0 +chr6 88240440 rs190368918 G A 48.23 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.570;DB;DP=97;Dels=0.02;FS=0.000;HaplotypeScore=9.7603;MLEAC=1;MLEAF=0.125;MQ=31.97;MQ0=0;MQRankSum=-1.328;QD=2.19;ReadPosRankSum=-0.121;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:84:84,0,360 0/0:24,0:25:45:0,45,553 0/0:25,1:26:12:0,12,402 0/0:20,1:22:9:0,9,373 +chr6 89790654 . T G 30.20 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.753;DP=62;Dels=0.03;FS=18.094;HaplotypeScore=5.3522;MLEAC=2;MLEAF=0.250;MQ=31.33;MQ0=0;MQRankSum=0.753;QD=0.94;ReadPosRankSum=-2.400;SB=-4.080e+00 GT:AD:DP:GQ:PL 0/0:11,1:12:2:0,2,236 0/1:14,2:16:50:50,0,232 0/0:18,0:18:48:0,48,595 0/1:13,1:14:20:20,0,189 +chr6 89814806 . G A 44.17 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.954;DP=72;Dels=0.01;FS=15.413;HaplotypeScore=6.2678;MLEAC=4;MLEAF=0.500;MQ=17.71;MQ0=0;MQRankSum=-0.642;QD=0.61;ReadPosRankSum=1.732;SB=4.78 GT:AD:DP:GQ:PL 0/1:12,3:17:10:10,0,64 0/1:17,6:25:44:44,0,126 0/1:13,2:16:17:17,0,17 0/1:12,1:13:15:15,0,41 +chr6 89889929 . G A 81.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.204;DP=43;Dels=0.05;FS=0.000;HaplotypeScore=5.6531;MLEAC=4;MLEAF=0.500;MQ=24.88;MQ0=0;MQRankSum=1.021;QD=1.89;ReadPosRankSum=1.954;SB=-4.456e-02 GT:AD:DP:GQ:PL 0/1:11,1:13:7:7,0,141 0/1:10,2:12:38:46,0,38 0/1:6,2:8:31:52,0,31 0/1:7,1:8:18:18,0,87 +chr6 90077882 . C T 184.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.242;DP=188;Dels=0.02;FS=37.913;HaplotypeScore=15.6548;MLEAC=3;MLEAF=0.375;MQ=32.68;MQ0=0;MQRankSum=-2.313;QD=1.16;ReadPosRankSum=-0.041;SB=0.332 GT:AD:DP:GQ:PL 0/1:43,6:51:58:58,0,1084 0/1:40,6:46:49:49,0,971 0/1:51,11:62:99:121,0,1362 0/0:23,2:25:20:0,20,519 +chr6 90333105 . T G 36.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.763;DP=47;Dels=0.00;FS=19.036;HaplotypeScore=10.6034;MLEAC=3;MLEAF=0.375;MQ=23.75;MQ0=0;MQRankSum=-1.588;QD=1.05;ReadPosRankSum=-0.515;SB=-2.410e+00 GT:AD:DP:GQ:PL 0/1:7,1:8:8:8,0,99 0/0:12,0:12:24:0,24,236 0/1:14,4:18:25:25,0,228 0/1:7,2:9:34:46,0,34 +chr6 90383000 . A G 35.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.420;DP=84;Dels=0.00;FS=11.827;HaplotypeScore=24.5702;MLEAC=3;MLEAF=0.375;MQ=25.00;MQ0=0;MQRankSum=0.873;QD=0.87;ReadPosRankSum=-1.197;SB=11.50 GT:AD:DP:GQ:PL 0/1:19,1:20:10:10,0,181 0/1:18,3:21:63:63,0,154 0/0:30,1:32:0:0,0,325 0/0:9,0:11:6:0,6,54 +chr6 90426270 rs9342205 C T 1656.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.655;DB;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=0.7249;MLEAC=8;MLEAF=1.00;MQ=36.91;MQ0=0;MQRankSum=1.655;QD=36.00;ReadPosRankSum=-0.654;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:48:649,48,0 1/1:0,15:15:42:544,42,0 1/1:0,9:9:27:354,27,0 1/1:1,4:5:12:148,12,0 +chr6 90468775 rs6937789 C G 84.98 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.386;DB;DP=13;Dels=0.00;FS=2.688;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=35.95;MQ0=0;MQRankSum=-1.312;QD=12.14;ReadPosRankSum=-0.386;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,1:3:32:32,0,78 0/1:1,3:4:20:93,0,20 0/0:3,0:3:6:0,6,85 0/0:3,0:3:6:0,6,81 +chr6 90482250 rs11961825 T A 777.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.132;DB;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=4.8456;MLEAC=3;MLEAF=0.375;MQ=30.62;MQ0=0;MQRankSum=-0.750;QD=8.94;ReadPosRankSum=-0.201;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:22,7:29:99:186,0,449 0/0:31,0:31:78:0,78,933 0/1:17,12:29:99:305,0,410 0/1:15,12:28:99:330,0,227 +chr6 90491362 . T C 213.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.881;DP=92;Dels=0.00;FS=5.254;HaplotypeScore=0.9283;MLEAC=4;MLEAF=0.500;MQ=30.32;MQ0=0;MQRankSum=-0.096;QD=2.32;ReadPosRankSum=3.916;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,3:28:40:40,0,198 0/1:18,8:27:99:125,0,246 0/1:26,3:29:53:53,0,264 0/1:5,3:8:21:38,0,21 +chr6 90524949 rs76611312 A G 79 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.423;DB;DP=51;Dels=0.02;FS=2.499;HaplotypeScore=1.3302;MLEAC=1;MLEAF=0.125;MQ=29.43;MQ0=0;MQRankSum=-0.643;QD=8.78;ReadPosRankSum=1.384;SB=0.012 GT:AD:DP:GQ:PL 0/0:10,0:10:24:0,24,300 0/1:4,4:8:56:115,0,56 0/0:13,0:14:27:0,27,310 0/0:18,0:18:39:0,39,465 +chr6 90604774 rs137966439 A T 36.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.376;DB;DP=225;Dels=0.00;FS=25.324;HaplotypeScore=10.7844;MLEAC=1;MLEAF=0.125;MQ=32.60;MQ0=0;MQRankSum=-0.721;QD=1.06;ReadPosRankSum=-0.907;SB=1.68 GT:AD:DP:GQ:PL 0/0:47,2:49:47:0,47,971 0/0:63,2:65:73:0,73,1485 0/0:74,2:76:99:0,112,1849 0/1:30,5:35:73:73,0,576 +chr6 90660626 . T A 126.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.140;DP=118;Dels=0.00;FS=36.099;HaplotypeScore=6.8722;MLEAC=3;MLEAF=0.375;MQ=25.27;MQ0=0;MQRankSum=2.625;QD=1.39;ReadPosRankSum=-1.122;SB=0.071 GT:AD:DP:GQ:PL 0/0:27,0:27:39:0,39,410 0/1:28,2:30:19:19,0,287 0/1:30,4:34:53:53,0,452 0/1:23,4:27:98:98,0,259 +chr6 90661342 . T G 47.57 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.786;DP=145;Dels=0.00;FS=20.729;HaplotypeScore=5.6359;MLEAC=1;MLEAF=0.125;MQ=27.18;MQ0=0;MQRankSum=1.215;QD=1.36;ReadPosRankSum=-1.629;SB=-5.189e+00 GT:AD:DP:GQ:PL 0/0:38,0:38:72:0,72,820 0/0:33,2:35:3:0,3,662 0/0:36,1:37:38:0,38,620 0/1:29,5:35:83:83,0,347 +chr6 91864016 rs72919729 G C 48.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DB;DP=9;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.70;MQ0=0;MQRankSum=1.026;QD=12.19;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:80,6,0 ./. ./. ./. +chr6 93982124 rs345713 A G 5610.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.697;DB;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=1.2327;MLEAC=7;MLEAF=0.875;MQ=34.32;MQ0=0;MQRankSum=-6.833;QD=23.97;ReadPosRankSum=1.497;SB=-5.760e+02 GT:AD:DP:GQ:PL 0/1:56,18:74:99:413,0,1844 1/1:1,48:49:99:1679,141,0 1/1:6,66:72:84:2300,84,0 1/1:3,36:39:77:1218,77,0 +chr6 97053780 . T A 101.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.965;DP=66;Dels=0.03;FS=21.663;HaplotypeScore=10.9167;MLEAC=3;MLEAF=0.375;MQ=28.43;MQ0=0;MQRankSum=2.229;QD=2.12;ReadPosRankSum=-1.338;SB=-1.564e+01 GT:AD:DP:GQ:PL 0/0:18,0:18:30:0,30,299 0/1:15,1:16:21:21,0,84 0/1:16,3:19:95:101,0,95 0/1:10,1:11:23:23,0,107 +chr6 97533243 . T G 196.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.789;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=11.7960;MLEAC=5;MLEAF=0.625;MQ=29.27;MQ0=0;MQRankSum=-0.626;QD=3.64;ReadPosRankSum=0.408;SB=-2.720e-02 GT:AD:DP:GQ:PL 1/1:7,3:10:9:90,9,0 0/1:12,4:16:54:54,0,75 0/1:11,4:15:33:78,0,33 0/1:11,1:13:19:19,0,127 +chr6 99856027 . T G 333.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.834;DP=229;Dels=0.00;FS=107.424;HaplotypeScore=10.8348;MLEAC=3;MLEAF=0.375;MQ=30.90;MQ0=0;MQRankSum=-6.831;QD=1.71;ReadPosRankSum=3.433;SB=0.774 GT:AD:DP:GQ:PL 0/1:59,12:71:56:56,0,1687 0/1:56,12:68:99:161,0,1445 0/1:44,12:56:99:160,0,975 0/0:29,5:34:29:0,29,889 +chr6 100062265 . A C 67.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.275;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=3.4546;MLEAC=2;MLEAF=0.250;MQ=36.03;MQ0=0;MQRankSum=-0.641;QD=2.19;ReadPosRankSum=2.166;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:52:52,0,110 0/1:14,2:17:56:56,0,71 0/0:16,0:16:21:0,21,265 0/0:10,0:10:3:0,3,43 +chr6 100960553 . A C 35.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.136;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.8163;MLEAC=2;MLEAF=0.250;MQ=34.24;MQ0=0;MQRankSum=-5.312;QD=0.48;ReadPosRankSum=2.724;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,6:38:66:66,0,813 0/0:51,4:56:66:0,66,1598 0/0:46,3:50:67:0,67,1413 0/1:31,4:35:9:9,0,721 +chr6 101086372 rs3818233 G C 98.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.577;DB;DP=18;Dels=0.00;FS=5.563;HaplotypeScore=0.6835;MLEAC=4;MLEAF=0.500;MQ=32.21;MQ0=0;MQRankSum=0.394;QD=7.05;ReadPosRankSum=0.789;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:12:0,12,166 0/1:3,2:5:26:34,0,26 0/1:5,1:6:28:28,0,114 1/1:1,2:3:6:82,6,0 +chr6 101878714 rs114450121 C T 123.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.815;DB;DP=44;Dels=0.00;FS=54.785;HaplotypeScore=2.9820;MLEAC=2;MLEAF=0.250;MQ=24.11;MQ0=0;MQRankSum=-0.398;QD=4.77;ReadPosRankSum=-0.457;SB=4.09 GT:AD:DP:GQ:PL 0/0:9,2:11:18:0,18,172 0/0:6,1:7:9:0,9,122 0/1:13,2:15:49:49,0,146 0/1:4,7:11:63:116,0,63 +chr6 105178225 . G T 351.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.862;DP=115;Dels=0.00;FS=30.474;HaplotypeScore=2.1864;MLEAC=4;MLEAF=0.500;MQ=39.50;MQ0=0;MQRankSum=-3.598;QD=4.39;ReadPosRankSum=1.928;SB=-2.590e+00 GT:AD:DP:GQ:PL 0/0:33,2:35:0:0,0,742 0/1:26,8:34:99:211,0,566 0/1:31,6:37:99:150,0,624 0/1:8,1:9:30:30,0,116 +chr6 105629085 . T C 81.67 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.747;DP=11;Dels=0.00;FS=9.031;HaplotypeScore=0.3156;MLEAC=6;MLEAF=1.00;MQ=16.95;MQ0=0;MQRankSum=0.747;QD=7.42;ReadPosRankSum=0.747;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:57,6,0 1/1:0,2:2:3:30,3,0 1/1:2,3:5:3:30,3,0 ./. +chr6 105821410 . C T 30.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.710;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=4.9935;MLEAC=1;MLEAF=0.125;MQ=32.94;MQ0=0;MQRankSum=-1.778;QD=1.15;ReadPosRankSum=-0.324;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:39,1:40:62:0,62,1030 0/0:34,1:35:78:0,78,914 0/0:41,0:41:93:0,93,1107 0/1:23,4:27:67:67,0,364 +chr6 106727541 . T A 52.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.912;DP=110;Dels=0.00;FS=96.422;HaplotypeScore=0.1835;MLEAC=2;MLEAF=0.250;MQ=39.88;MQ0=0;MQRankSum=-0.872;QD=1.24;ReadPosRankSum=-1.964;SB=-4.184e+00 GT:AD:DP:GQ:PL 0/0:29,2:31:9:0,9,1027 0/1:29,5:34:72:72,0,1012 0/0:35,2:37:28:0,28,1337 0/1:7,1:8:21:21,0,227 +chr6 106967664 . G T 83.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.450;DP=192;Dels=0.00;FS=35.140;HaplotypeScore=5.3051;MLEAC=1;MLEAF=0.125;MQ=34.52;MQ0=0;MQRankSum=-0.127;QD=2.33;ReadPosRankSum=0.150;SB=0.140 GT:AD:DP:GQ:PL 0/0:42,2:44:60:0,60,944 0/0:57,1:59:91:0,91,1343 0/0:52,1:53:70:0,70,1016 0/1:30,6:36:99:120,0,600 +chr6 107003630 . T G 248.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.842;DP=182;Dels=0.00;FS=48.697;HaplotypeScore=2.2278;MLEAC=3;MLEAF=0.375;MQ=33.94;MQ0=0;MQRankSum=-4.552;QD=1.94;ReadPosRankSum=-0.338;SB=0.892 GT:AD:DP:GQ:PL 0/1:47,6:53:55:55,0,1209 0/1:39,9:48:99:132,0,1113 0/0:51,3:54:39:0,39,1304 0/1:20,7:27:99:105,0,583 +chr6 107100146 . G T 204.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.699;DP=160;Dels=0.00;FS=77.846;HaplotypeScore=6.9760;MLEAC=4;MLEAF=0.500;MQ=14.25;MQ0=0;MQRankSum=2.641;QD=1.28;ReadPosRankSum=0.065;SB=-1.314e+00 GT:AD:DP:GQ:PL 0/1:36,6:42:49:49,0,121 0/1:38,8:46:15:141,0,15 0/1:39,5:44:14:14,0,134 0/1:25,3:28:37:43,0,37 +chr6 107551281 rs7754744 A G 440.62 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.380;DB;DP=29;Dels=0.00;FS=17.258;HaplotypeScore=0.2487;MLEAC=5;MLEAF=0.625;MQ=27.10;MQ0=0;MQRankSum=0.321;QD=15.19;ReadPosRankSum=0.864;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:24:242,24,0 0/1:7,5:12:98:153,0,98 0/1:3,1:4:24:24,0,62 0/1:3,2:5:28:67,0,28 +chr6 108639499 rs148715238 G GA 265.03 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.420;DB;DP=67;FS=4.200;HaplotypeScore=1.9582;MLEAC=4;MLEAF=0.500;MQ=18.68;MQ0=0;MQRankSum=-0.742;QD=5.30;ReadPosRankSum=1.001;SB=-7.824e+01 GT:AD:DP:GQ:PL 0/0:17,0:7:21:0,21,318 1/1:10,9:6:15:219,15,0 0/1:14,3:5:76:76,0,121 0/1:8,1:6:27:27,0,208 +chr6 109616930 . T C,G 105.17 . AC=3,2;AF=0.375,0.250;AN=8;BaseQRankSum=-0.651;DP=43;Dels=0.05;FS=0.000;HaplotypeScore=11.4322;MLEAC=3,2;MLEAF=0.375,0.250;MQ=24.02;MQ0=0;MQRankSum=0.279;QD=2.45;ReadPosRankSum=-1.457;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/2:9,1,2:12:17:63,42,80,0,17,35 0/1:9,1,0:10:14:14,0,72,20,75,94 0/1:10,2,1:13:42:42,0,115,54,121,175 1/2:3,2,1:6:22:69,28,22,41,0,38 +chr6 109635208 . A T 44.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.409;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1149;MLEAC=3;MLEAF=0.375;MQ=33.96;MQ0=0;MQRankSum=-3.159;QD=0.55;ReadPosRankSum=2.252;SB=0.142 GT:AD:DP:GQ:PL 0/0:24,1:25:10:0,10,483 0/1:26,2:28:12:12,0,519 0/1:29,4:33:53:53,0,522 0/1:18,2:20:22:22,0,431 +chr6 109764731 . A C 187.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.917;DP=77;Dels=0.00;FS=69.442;HaplotypeScore=2.9415;MLEAC=4;MLEAF=0.500;MQ=28.36;MQ0=0;MQRankSum=-0.107;QD=2.43;ReadPosRankSum=0.905;SB=-4.282e-01 GT:AD:DP:GQ:PL 0/1:11,4:15:84:84,0,133 0/1:24,4:28:94:94,0,279 0/1:19,1:20:7:7,0,256 0/1:10,2:14:44:44,0,132 +chr6 109815351 rs7755941 T C 592.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.837;DB;DP=183;Dels=0.00;FS=9.165;HaplotypeScore=3.1920;MLEAC=1;MLEAF=0.125;MQ=34.28;MQ0=0;MQRankSum=-0.287;QD=13.48;ReadPosRankSum=0.302;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:24,20:44:99:629,0,463 0/0:55,0:55:99:0,135,1674 0/0:62,0:62:99:0,132,1451 0/0:22,0:22:48:0,48,517 +chr6 109827967 . T G 250.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.509;DP=133;Dels=0.00;FS=80.309;HaplotypeScore=3.5345;MLEAC=4;MLEAF=0.500;MQ=34.52;MQ0=0;MQRankSum=-2.433;QD=1.88;ReadPosRankSum=-0.213;SB=0.031 GT:AD:DP:GQ:PL 0/1:26,5:31:98:98,0,585 0/1:45,4:49:38:38,0,1123 0/1:35,5:40:61:61,0,872 0/1:8,5:13:96:96,0,172 +chr6 110514396 . G A 46 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.232;DP=138;Dels=0.00;FS=11.584;HaplotypeScore=1.2262;MLEAC=2;MLEAF=0.250;MQ=35.33;MQ0=0;MQRankSum=-3.486;QD=0.85;ReadPosRankSum=2.497;SB=-4.107e+00 GT:AD:DP:GQ:PL 0/0:35,2:37:52:0,52,1061 0/1:37,5:42:68:68,0,894 0/0:43,4:47:0:0,0,1286 0/1:11,1:12:17:17,0,186 +chr6 110736610 rs9384742 T C 311.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.325;DB;DP=101;Dels=0.02;FS=8.592;HaplotypeScore=1.2214;MLEAC=2;MLEAF=0.250;MQ=37.46;MQ0=0;MQRankSum=-2.837;QD=7.79;ReadPosRankSum=1.555;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,9:24:99:278,0,463 0/1:11,3:14:75:75,0,325 0/0:32,1:33:93:0,93,1242 0/0:28,0:28:72:0,72,906 +chr6 110746526 rs7756222 T C 803.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=3.386;DB;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.1482;MLEAC=2;MLEAF=0.250;MQ=37.08;MQ0=0;MQRankSum=-0.626;QD=11.82;ReadPosRankSum=2.056;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:18,21:39:99:681,0,464 0/1:22,6:29:99:164,0,690 0/0:51,0:52:99:0,129,1726 0/0:36,0:36:99:0,99,1249 +chr6 111213927 rs78615031 T C 82.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.968;DB;DP=177;Dels=0.00;FS=7.405;HaplotypeScore=22.0068;MLEAC=3;MLEAF=0.375;MQ=27.00;MQ0=0;MQRankSum=-2.189;QD=0.60;ReadPosRankSum=-4.934;SB=-5.024e+01 GT:AD:DP:GQ:PL 0/0:33,5:38:13:0,13,862 0/1:49,4:53:8:8,0,937 0/1:55,7:62:62:62,0,1246 0/1:20,4:24:55:55,0,405 +chr6 111320894 . A T 47.70 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.320;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.2393;MLEAC=2;MLEAF=0.250;MQ=34.44;MQ0=0;MQRankSum=-0.574;QD=1.19;ReadPosRankSum=1.630;SB=0.126 GT:AD:DP:GQ:PL 0/1:27,3:30:38:38,0,378 0/0:26,0:26:51:0,51,599 0/0:30,2:32:13:0,13,701 0/1:8,2:10:51:51,0,107 +chr6 111631172 rs143815049 G A 372.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.888;DB;DP=125;Dels=0.02;FS=122.855;HaplotypeScore=23.1939;MLEAC=4;MLEAF=0.500;MQ=25.27;MQ0=0;MQRankSum=-1.154;QD=2.98;ReadPosRankSum=4.953;SB=0.959 GT:AD:DP:GQ:PL 0/1:31,6:37:98:98,0,510 0/1:18,11:29:99:188,0,180 0/1:30,6:36:88:88,0,307 0/1:14,6:20:41:41,0,52 +chr6 111714106 . A C 74.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.913;DP=78;Dels=0.00;FS=18.052;HaplotypeScore=1.3960;MLEAC=4;MLEAF=0.500;MQ=33.32;MQ0=0;MQRankSum=-0.791;QD=0.96;ReadPosRankSum=0.743;SB=-1.699e-01 GT:AD:DP:GQ:PL 0/1:27,2:29:18:18,0,384 0/1:12,3:15:60:60,0,208 0/1:25,2:27:16:16,0,333 0/1:6,1:7:23:23,0,139 +chr6 111983067 . C G 126.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.568;DP=154;Dels=0.01;FS=47.019;HaplotypeScore=15.1920;MLEAC=3;MLEAF=0.375;MQ=27.62;MQ0=0;MQRankSum=1.484;QD=1.10;ReadPosRankSum=-2.653;SB=1.05 GT:AD:DP:GQ:PL 0/0:38,1:39:32:0,32,613 0/1:26,4:30:64:64,0,431 0/1:39,4:43:31:31,0,645 0/1:36,5:41:75:75,0,561 +chr6 112230357 rs9487746 G A 82.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.727;DB;DP=5;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=27.18;MQ0=0;MQRankSum=0.727;QD=16.44;ReadPosRankSum=0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:38,3,0 ./. 1/1:2,2:4:6:78,6,0 +chr6 112422154 rs17073353 T C 69.30 . AC=1;AF=0.167;AN=6;BaseQRankSum=0.254;DB;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.0227;MLEAC=1;MLEAF=0.167;MQ=33.66;MQ0=0;MQRankSum=0.085;QD=9.90;ReadPosRankSum=-1.606;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:99:103,0,103 ./. 0/0:2,0:2:3:0,3,43 0/0:4,0:4:9:0,9,121 +chr6 112493985 . C G 65.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.060;DP=106;Dels=0.00;FS=10.149;HaplotypeScore=0.2498;MLEAC=2;MLEAF=0.250;MQ=34.84;MQ0=0;MQRankSum=-1.277;QD=1.29;ReadPosRankSum=-0.326;SB=-2.485e+00 GT:AD:DP:GQ:PL 0/0:24,1:25:5:0,5,384 0/1:21,2:23:14:14,0,427 0/0:29,1:30:37:0,37,713 0/1:24,4:28:92:92,0,305 +chr6 112687011 . G C 101.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.690;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.7341;MLEAC=3;MLEAF=0.375;MQ=23.32;MQ0=0;MQRankSum=1.138;QD=1.71;ReadPosRankSum=-2.965;SB=0.062 GT:AD:DP:GQ:PL 0/0:20,0:20:30:0,30,302 0/1:15,1:16:13:13,0,127 0/1:18,2:20:40:40,0,210 0/1:17,5:23:91:91,0,192 +chr6 114378970 rs2282237 C T 1946.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.856;DB;DP=240;Dels=0.00;FS=1.902;HaplotypeScore=0.4863;MLEAC=3;MLEAF=0.375;MQ=37.04;MQ0=0;MQRankSum=-3.305;QD=12.17;ReadPosRankSum=0.792;SB=-7.750e+02 GT:AD:DP:GQ:PL 0/1:35,24:59:99:727,0,1185 0/0:80,0:80:99:0,229,2979 0/1:48,29:77:99:890,0,1642 0/1:12,12:24:99:373,0,351 +chr6 114405654 . A T 35.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.999;DP=197;Dels=0.00;FS=40.106;HaplotypeScore=9.4033;MLEAC=4;MLEAF=0.500;MQ=12.75;MQ0=0;MQRankSum=4.268;QD=0.23;ReadPosRankSum=-0.540;SB=-3.338e+00 GT:AD:DP:GQ:PL 0/1:47,2:49:38:38,0,42 0/1:43,5:48:14:14,0,95 0/1:56,2:58:24:24,0,119 0/0:39,3:42:1:0,1,194 +chr6 116092134 rs12207544 G C 386.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.931;DB;DP=36;Dels=0.00;FS=3.136;HaplotypeScore=0.3418;MLEAC=3;MLEAF=0.375;MQ=29.85;MQ0=0;MQRankSum=0.182;QD=12.46;ReadPosRankSum=-0.083;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:9:0,9,115 0/1:5,5:10:65:87,0,65 0/1:4,7:11:96:216,0,96 0/1:5,5:10:88:126,0,88 +chr6 116427518 . T G 77.33 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.770;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=11.3776;MLEAC=4;MLEAF=0.500;MQ=19.58;MQ0=0;MQRankSum=1.089;QD=2.49;ReadPosRankSum=-0.027;SB=25.53 GT:AD:DP:GQ:PL 0/0:9,1:11:3:0,3,23 0/1:10,3:13:45:45,0,53 0/1:11,2:13:18:18,0,45 1/1:3,2:5:6:57,6,0 +chr6 116901640 rs1321534 G A 161.11 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=8;Dels=0.00;FS=5.441;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=29.37;MQ0=0;MQRankSum=0.736;QD=26.85;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:9:122,9,0 ./. ./. 1/1:1,2:3:6:74,6,0 +chr6 117114403 rs6901971 G A 2151.57 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.186;DB;DP=75;Dels=0.01;FS=5.748;HaplotypeScore=4.3159;MLEAC=7;MLEAF=0.875;MQ=34.36;MQ0=0;MQRankSum=1.270;QD=28.69;ReadPosRankSum=1.564;SB=-2.440e+02 GT:AD:DP:GQ:PL 0/1:8,14:22:99:468,0,178 1/1:0,22:22:63:814,63,0 1/1:3,18:21:27:676,27,0 1/1:1,8:9:21:238,21,0 +chr6 117244246 . T A 89.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.728;DP=105;Dels=0.00;FS=12.327;HaplotypeScore=2.7443;MLEAC=3;MLEAF=0.375;MQ=30.89;MQ0=0;MQRankSum=0.323;QD=1.15;ReadPosRankSum=0.259;SB=0.823 GT:AD:DP:GQ:PL 0/1:27,4:31:46:46,0,648 0/0:25,1:27:22:0,22,442 0/1:33,3:36:20:20,0,773 0/1:8,3:11:67:67,0,140 +chr6 117711041 . T C 124.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.042;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=4.3854;MLEAC=4;MLEAF=0.500;MQ=35.47;MQ0=0;MQRankSum=-1.248;QD=0.94;ReadPosRankSum=0.039;SB=-1.187e-02 GT:AD:DP:GQ:PL 0/1:27,2:29:12:12,0,558 0/1:34,4:38:46:46,0,828 0/1:34,4:38:58:58,0,685 0/1:23,3:26:51:51,0,498 +chr6 117730819 rs2273601 G A 1086.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.412;DB;DP=111;Dels=0.00;FS=5.807;HaplotypeScore=0.2499;MLEAC=3;MLEAF=0.375;MQ=36.12;MQ0=0;MQRankSum=1.328;QD=13.25;ReadPosRankSum=0.135;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/0:29,0:29:84:0,84,1033 0/1:11,12:23:99:366,0,322 0/1:21,12:33:99:414,0,554 0/1:15,11:26:99:350,0,376 +chr6 117840919 . T A 64.86 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.187;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=6.4481;MLEAC=4;MLEAF=0.500;MQ=24.47;MQ0=0;MQRankSum=0.152;QD=2.70;ReadPosRankSum=-0.822;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:24:0,24,215 1/1:7,2:9:6:57,6,0 0/1:10,1:11:22:22,0,74 1/1:1,3:4:3:32,3,0 +chr6 117862048 rs2071825 C A 3812.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=6.251;DB;DP=254;Dels=0.00;FS=1.001;HaplotypeScore=1.7441;MLEAC=4;MLEAF=0.500;MQ=39.09;MQ0=0;MQRankSum=-2.233;QD=20.61;ReadPosRankSum=1.343;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:2,57:60:99:2225,140,0 0/0:69,0:69:99:0,202,2625 0/1:42,30:72:99:934,0,1348 0/1:32,21:53:99:653,0,957 +chr6 117994407 . A G 130.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.036;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.6412;MLEAC=4;MLEAF=0.500;MQ=34.01;MQ0=0;MQRankSum=-1.778;QD=1.50;ReadPosRankSum=-1.459;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,3:28:43:43,0,687 0/1:19,4:23:82:82,0,263 0/1:18,2:20:15:15,0,514 0/1:14,2:16:33:33,0,364 +chr6 118832397 rs74822041 G C 346 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.837;DB;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.9607;MLEAC=1;MLEAF=0.125;MQ=35.27;MQ0=0;MQRankSum=1.034;QD=13.31;ReadPosRankSum=0.816;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,0:26:63:0,63,762 0/1:15,11:26:99:382,0,304 0/0:37,0:37:87:0,87,1087 0/0:14,0:15:21:0,21,261 +chr6 119282905 . C A 117.72 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.431;DP=87;Dels=0.05;FS=14.927;HaplotypeScore=11.3275;MLEAC=5;MLEAF=0.625;MQ=15.99;MQ0=0;MQRankSum=-0.437;QD=1.35;ReadPosRankSum=-0.193;SB=-1.133e-02 GT:AD:DP:GQ:PL 0/1:20,7:27:55:88,0,55 0/1:17,6:23:14:14,0,69 0/1:20,3:23:36:36,0,81 1/1:6,4:10:3:22,3,0 +chr6 119522353 rs9481890 T C 1998.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.201;DB;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.1663;MLEAC=4;MLEAF=0.500;MQ=36.09;MQ0=0;MQRankSum=-2.008;QD=21.49;ReadPosRankSum=1.961;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1416,111,0 0/0:40,0:40:99:0,120,1590 0/1:28,19:47:99:616,0,727 0/1:8,1:9:15:15,0,225 +chr6 121452806 . T A 61.62 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.765;DP=103;Dels=0.02;FS=53.439;HaplotypeScore=7.3620;MLEAC=1;MLEAF=0.125;MQ=31.55;MQ0=0;MQRankSum=-4.177;QD=2.20;ReadPosRankSum=0.649;SB=-3.584e+00 GT:AD:DP:GQ:PL 0/1:20,8:28:97:97,0,512 0/0:34,2:36:31:0,31,658 0/0:29,5:34:15:0,15,636 0/0:3,0:3:3:0,3,42 +chr6 123038918 . C T 185.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.242;DP=177;Dels=0.01;FS=32.468;HaplotypeScore=7.2783;MLEAC=3;MLEAF=0.375;MQ=33.65;MQ0=0;MQRankSum=-5.851;QD=1.60;ReadPosRankSum=3.270;SB=0.689 GT:AD:DP:GQ:PL 0/1:29,4:33:13:13,0,895 0/0:56,4:61:40:0,40,1537 0/1:39,6:45:80:80,0,853 0/1:28,9:37:99:135,0,694 +chr6 123104781 . G T 248.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.025;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=3.6115;MLEAC=5;MLEAF=0.625;MQ=29.47;MQ0=0;MQRankSum=-0.258;QD=3.77;ReadPosRankSum=1.546;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,5:24:99:140,0,135 0/1:16,3:19:68:68,0,183 0/1:15,2:17:59:59,0,75 1/1:4,1:5:3:24,3,0 +chr6 123702477 . A C 54.48 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.143;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=8.6296;MLEAC=3;MLEAF=0.500;MQ=18.88;MQ0=0;MQRankSum=0.466;QD=3.89;ReadPosRankSum=-0.143;SB=2.98 GT:AD:DP:GQ:PL 0/0:5,1:6:3:0,3,22 1/1:2,2:4:3:23,3,0 0/1:6,3:10:11:69,0,11 ./. +chr6 127797179 rs3734448 G A 1830.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.633;DB;DP=120;Dels=0.01;FS=1.632;HaplotypeScore=9.8778;MLEAC=4;MLEAF=0.500;MQ=33.40;MQ0=0;MQRankSum=1.845;QD=20.12;ReadPosRankSum=1.300;SB=-5.399e+02 GT:AD:DP:GQ:PL 1/1:3,28:31:50:1007,50,0 0/0:28,0:28:72:0,72,835 0/1:20,11:31:99:367,0,455 0/1:14,15:29:99:505,0,193 +chr6 128176239 . T A 72.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.191;DP=106;Dels=0.00;FS=13.290;HaplotypeScore=8.1908;MLEAC=3;MLEAF=0.375;MQ=30.66;MQ0=0;MQRankSum=-1.353;QD=1.00;ReadPosRankSum=-0.365;SB=1.29 GT:AD:DP:GQ:PL 0/1:30,3:35:25:25,0,570 0/0:31,1:33:6:0,6,332 0/1:25,3:30:45:45,0,300 0/1:6,2:8:45:45,0,56 +chr6 128718599 . A G 41.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.106;DP=103;Dels=0.05;FS=0.000;HaplotypeScore=31.5273;MLEAC=2;MLEAF=0.250;MQ=23.00;MQ0=0;MQRankSum=-0.609;QD=0.70;ReadPosRankSum=2.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,2:32:32:32,0,156 0/1:20,5:25:50:50,0,155 0/0:21,0:21:15:0,15,136 0/0:18,1:20:3:0,3,22 +chr6 129835722 . T G 38.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.731;DP=126;Dels=0.02;FS=9.388;HaplotypeScore=19.6365;MLEAC=4;MLEAF=0.500;MQ=23.45;MQ0=0;MQRankSum=-0.797;QD=0.31;ReadPosRankSum=0.444;SB=-2.233e+00 GT:AD:DP:GQ:PL 0/1:29,6:35:1:1,0,401 0/1:28,5:34:46:46,0,221 0/1:31,2:33:7:7,0,298 0/1:19,2:22:24:24,0,207 +chr6 129955327 rs12664247 T C 712.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.842;DB;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.2499;MLEAC=3;MLEAF=0.375;MQ=33.73;MQ0=0;MQRankSum=-1.848;QD=12.51;ReadPosRankSum=-1.540;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,915 0/1:13,12:25:99:361,0,408 0/1:16,13:29:99:366,0,467 0/1:2,1:3:26:29,0,26 +chr6 132271476 . C A 95.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.841;DP=203;Dels=0.00;FS=11.490;HaplotypeScore=12.5787;MLEAC=1;MLEAF=0.125;MQ=33.14;MQ0=0;MQRankSum=-3.134;QD=2.40;ReadPosRankSum=-1.407;SB=-1.058e-02 GT:AD:DP:GQ:PL 0/0:50,1:51:99:0,99,1480 0/0:47,1:48:63:0,63,1032 0/0:61,2:63:94:0,94,1308 0/1:32,8:40:99:132,0,573 +chr6 132271586 . C A 52.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.611;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=16.7866;MLEAC=3;MLEAF=0.375;MQ=23.43;MQ0=0;MQRankSum=0.188;QD=2.28;ReadPosRankSum=-0.942;SB=-1.077e+00 GT:AD:DP:GQ:PL 1/1:8,3:11:6:67,6,0 0/0:12,1:13:15:0,15,127 0/0:10,1:11:3:0,3,28 0/1:11,1:12:17:29,0,17 +chr6 132909894 . C G 57.44 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.768;DP=184;Dels=0.00;FS=58.063;HaplotypeScore=10.5889;MLEAC=2;MLEAF=0.250;MQ=35.69;MQ0=0;MQRankSum=-3.287;QD=0.61;ReadPosRankSum=-0.250;SB=-1.817e+00 GT:AD:DP:GQ:PL 0/1:31,5:36:84:84,0,886 0/0:43,2:45:45:0,45,1099 0/1:52,4:58:14:14,0,1404 0/0:42,3:45:9:0,9,1005 +chr6 132966336 . G C 120.99 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.988;DP=164;Dels=0.00;FS=47.093;HaplotypeScore=1.8601;MLEAC=2;MLEAF=0.250;MQ=35.45;MQ0=0;MQRankSum=-4.427;QD=1.33;ReadPosRankSum=2.131;SB=1.18 GT:AD:DP:GQ:PL 0/1:33,7:40:92:92,0,955 0/1:43,8:51:70:70,0,1156 0/0:55,3:58:59:0,59,1565 0/0:14,1:15:8:0,8,352 +chr6 133045902 rs2294759 A G 7274.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.394;DB;DP=281;Dels=0.01;FS=7.989;HaplotypeScore=1.9252;MLEAC=7;MLEAF=0.875;MQ=33.71;MQ0=0;MQRankSum=-2.676;QD=25.89;ReadPosRankSum=3.214;SB=-3.451e+03 GT:AD:DP:GQ:PL 1/1:3,67:70:99:2305,148,0 0/1:46,32:78:99:805,0,1375 1/1:2,80:82:99:2608,160,0 1/1:2,47:49:99:1556,132,0 +chr6 133045991 . A G 122.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.360;DP=220;Dels=0.00;FS=118.680;HaplotypeScore=17.8585;MLEAC=2;MLEAF=0.250;MQ=35.12;MQ0=0;MQRankSum=-4.097;QD=1.05;ReadPosRankSum=2.944;SB=-1.626e+00 GT:AD:DP:GQ:PL 0/1:55,6:61:56:56,0,1119 0/1:47,7:55:99:108,0,851 0/0:61,4:65:23:0,23,1335 0/0:35,2:38:60:0,60,752 +chr6 133108656 . C A 100.31 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.198;DP=64;Dels=0.03;FS=73.154;HaplotypeScore=9.7877;MLEAC=3;MLEAF=0.375;MQ=26.71;MQ0=0;MQRankSum=-0.999;QD=1.73;ReadPosRankSum=2.391;SB=2.19 GT:AD:DP:GQ:PL 0/1:9,7:16:99:106,0,159 0/1:15,5:20:16:16,0,245 0/1:18,2:20:21:21,0,248 0/0:6,0:6:12:0,12,147 +chr6 133136322 . A T 81.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.192;DP=48;Dels=0.00;FS=35.278;HaplotypeScore=4.9167;MLEAC=4;MLEAF=0.500;MQ=33.48;MQ0=0;MQRankSum=-1.717;QD=1.70;ReadPosRankSum=2.192;SB=-1.173e+00 GT:AD:DP:GQ:PL 0/1:7,3:10:41:41,0,224 0/1:15,3:18:33:33,0,401 0/1:7,1:8:4:4,0,164 0/1:10,2:12:45:45,0,253 +chr6 133593944 . C G 182.03 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.466;DP=16;Dels=0.00;FS=6.929;HaplotypeScore=0.8287;MLEAC=5;MLEAF=0.625;MQ=20.60;MQ0=0;MQRankSum=1.312;QD=15.17;ReadPosRankSum=1.003;SB=-2.165e+01 GT:AD:DP:GQ:PL 0/1:1,3:4:20:72,0,20 0/0:3,0:4:3:0,3,24 0/1:1,3:4:12:74,0,12 1/1:1,3:4:9:80,9,0 +chr6 133827354 rs2277083 A G 1122.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.728;DB;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7483;MLEAC=4;MLEAF=0.500;MQ=35.90;MQ0=0;MQRankSum=-1.098;QD=11.82;ReadPosRankSum=-0.928;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,11:29:99:331,0,607 0/1:16,14:30:99:449,0,514 0/1:15,10:25:99:291,0,519 0/1:8,3:11:94:94,0,137 +chr6 134305570 . T A 69.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.146;DP=60;Dels=0.00;FS=39.306;HaplotypeScore=2.3979;MLEAC=3;MLEAF=0.375;MQ=27.87;MQ0=0;MQRankSum=-1.061;QD=1.29;ReadPosRankSum=3.485;SB=1.85 GT:AD:DP:GQ:PL 0/1:19,3:22:33:33,0,406 0/1:13,1:14:3:3,0,210 0/1:13,5:18:74:74,0,224 0/0:6,0:6:9:0,9,106 +chr6 135239678 . A G 153.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.703;DP=104;Dels=0.00;FS=82.800;HaplotypeScore=4.8911;MLEAC=3;MLEAF=0.375;MQ=31.98;MQ0=0;MQRankSum=-0.063;QD=2.02;ReadPosRankSum=1.022;SB=-3.650e+00 GT:AD:DP:GQ:PL 0/1:19,4:23:91:91,0,355 0/1:19,2:21:18:18,0,440 0/1:26,5:32:88:88,0,611 0/0:28,0:28:48:0,48,553 +chr6 135263586 rs143707042 C A 63.19 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.871;DB;DP=130;Dels=0.01;FS=1.736;HaplotypeScore=2.8776;MLEAC=1;MLEAF=0.125;MQ=33.02;MQ0=0;MQRankSum=-0.105;QD=1.91;ReadPosRankSum=-0.690;SB=-7.204e+00 GT:AD:DP:GQ:PL 0/0:37,0:37:57:0,57,686 0/0:25,2:27:9:0,9,541 0/0:31,1:32:15:0,15,620 0/1:29,4:33:99:99,0,328 +chr6 135511035 rs112813294 T G 53.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.695;DB;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=17.7437;MLEAC=2;MLEAF=0.250;MQ=23.80;MQ0=0;MQRankSum=1.337;QD=0.97;ReadPosRankSum=-0.963;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,3:34:53:53,0,219 0/0:25,0:25:21:0,21,219 0/0:38,0:38:24:0,24,259 0/1:18,2:20:42:42,0,131 +chr6 135518224 . T G 133.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.745;DP=282;Dels=0.00;FS=256.419;HaplotypeScore=6.3846;MLEAC=3;MLEAF=0.375;MQ=34.37;MQ0=0;MQRankSum=-7.149;QD=0.63;ReadPosRankSum=2.539;SB=0.775 GT:AD:DP:GQ:PL 0/1:64,11:76:68:68,0,1888 0/1:59,16:75:78:78,0,1715 0/0:64,5:69:60:0,60,1515 0/1:49,12:61:31:31,0,1316 +chr6 136173173 . T A 57.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.190;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.1805;MLEAC=2;MLEAF=0.250;MQ=35.92;MQ0=0;MQRankSum=-3.319;QD=0.83;ReadPosRankSum=-0.418;SB=1.86 GT:AD:DP:GQ:PL 0/1:42,5:47:59:59,0,836 0/0:44,5:49:9:0,9,1165 0/0:47,1:48:76:0,76,1213 0/1:19,4:23:40:40,0,388 +chr6 136495018 . G T 389.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.246;DP=90;Dels=0.00;FS=16.302;HaplotypeScore=9.8453;MLEAC=4;MLEAF=0.500;MQ=32.50;MQ0=0;MQRankSum=-2.903;QD=4.33;ReadPosRankSum=1.230;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:85:85,0,220 0/1:13,6:19:99:139,0,131 0/1:27,4:31:72:72,0,503 0/1:13,7:21:99:136,0,222 +chr6 136599836 rs9942518 G A 1263.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.048;DB;DP=216;Dels=0.00;FS=8.775;HaplotypeScore=5.8766;MLEAC=4;MLEAF=0.500;MQ=23.95;MQ0=0;MQRankSum=1.317;QD=5.85;ReadPosRankSum=2.744;SB=-4.810e+02 GT:AD:DP:GQ:PL 0/1:38,26:64:99:506,0,512 0/1:34,21:55:99:416,0,310 0/1:50,14:64:99:251,0,658 0/1:24,8:32:99:133,0,239 +chr6 136952930 rs2237268 T C 39.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=9;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=15.67;MQ0=0;MQRankSum=1.026;QD=7.80;ReadPosRankSum=-1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:37,3,0 ./. 1/1:2,1:3:3:35,3,0 ./. +chr6 137519588 rs11914 A C 1471.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.791;DB;DP=211;Dels=0.00;FS=0.618;HaplotypeScore=0.4958;MLEAC=3;MLEAF=0.375;MQ=36.15;MQ0=0;MQRankSum=-3.231;QD=9.94;ReadPosRankSum=1.178;SB=-5.430e+02 GT:AD:DP:GQ:PL 0/0:62,1:63:99:0,134,2139 0/1:30,15:45:99:447,0,1025 0/1:40,23:63:99:705,0,1168 0/1:25,15:40:99:363,0,823 +chr6 137865194 . C G 39.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.194;DP=60;Dels=0.02;FS=13.900;HaplotypeScore=3.7481;MLEAC=2;MLEAF=0.250;MQ=19.66;MQ0=0;MQRankSum=1.126;QD=1.08;ReadPosRankSum=0.853;SB=-2.254e+00 GT:AD:DP:GQ:PL 0/1:14,3:17:62:62,0,102 0/0:17,0:17:6:0,6,56 0/1:18,1:19:17:17,0,50 0/0:6,0:6:3:0,3,39 +chr6 138617907 . G C 44.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.291;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.7159;MLEAC=3;MLEAF=0.375;MQ=35.56;MQ0=0;MQRankSum=-1.983;QD=0.33;ReadPosRankSum=1.535;SB=-2.700e-02 GT:AD:DP:GQ:PL 0/0:48,1:49:13:0,13,588 0/1:45,2:47:24:24,0,526 0/1:45,2:47:9:9,0,566 0/1:40,3:43:54:54,0,534 +chr6 138752068 . A C 923.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.474;DP=106;Dels=0.00;FS=17.133;HaplotypeScore=4.1110;MLEAC=4;MLEAF=0.500;MQ=32.74;MQ0=0;MQRankSum=-3.974;QD=8.71;ReadPosRankSum=2.560;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,11:21:99:293,0,234 0/1:15,9:24:99:213,0,259 0/1:28,8:36:99:165,0,740 0/1:14,11:25:99:295,0,237 +chr6 139981348 . A G 51.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.398;DP=48;Dels=0.00;FS=8.556;HaplotypeScore=1.2005;MLEAC=2;MLEAF=0.250;MQ=24.13;MQ0=0;MQRankSum=0.777;QD=1.99;ReadPosRankSum=0.549;SB=-7.284e-01 GT:AD:DP:GQ:PL 0/1:14,1:15:9:9,0,188 0/1:7,4:11:62:82,0,62 0/0:11,0:11:15:0,15,127 0/0:11,0:11:6:0,6,56 +chr6 142455032 . G T 54.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.649;DP=108;Dels=0.00;FS=11.604;HaplotypeScore=13.3753;MLEAC=3;MLEAF=0.375;MQ=23.87;MQ0=0;MQRankSum=-0.655;QD=0.73;ReadPosRankSum=0.023;SB=1.93 GT:AD:DP:GQ:PL 0/1:24,1:26:17:17,0,117 0/1:24,3:27:69:69,0,108 0/0:30,1:33:21:0,21,206 0/1:21,1:22:11:11,0,103 +chr6 142487469 rs225656 C A 93.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.137;DB;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.0902;MLEAC=2;MLEAF=0.250;MQ=26.57;MQ0=0;MQRankSum=-0.218;QD=2.59;ReadPosRankSum=-0.241;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:18:37:37,0,218 0/1:12,6:18:97:97,0,210 0/0:22,0:22:54:0,54,631 0/0:6,0:6:6:0,6,84 +chr6 142491584 rs225663 A G 1132.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.010;DB;DP=160;Dels=0.01;FS=0.000;HaplotypeScore=3.2453;MLEAC=2;MLEAF=0.250;MQ=35.75;MQ0=0;MQRankSum=-2.233;QD=12.31;ReadPosRankSum=1.110;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,19:42:99:542,0,699 0/1:29,20:49:99:632,0,942 0/0:46,0:46:99:0,135,1721 0/0:21,1:22:54:0,54,672 +chr6 143784164 . A G 184.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.695;DP=78;Dels=0.03;FS=0.000;HaplotypeScore=15.9092;MLEAC=4;MLEAF=0.500;MQ=29.11;MQ0=0;MQRankSum=-0.540;QD=2.37;ReadPosRankSum=-1.106;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:61:61,0,110 0/1:14,3:17:59:59,0,134 0/1:20,4:24:93:93,0,163 0/1:14,2:16:14:14,0,90 +chr6 144263377 . T C 50.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.286;DP=232;Dels=0.00;FS=51.898;HaplotypeScore=8.4177;MLEAC=1;MLEAF=0.125;MQ=31.25;MQ0=0;MQRankSum=-5.577;QD=0.85;ReadPosRankSum=3.259;SB=-6.474e+00 GT:AD:DP:GQ:PL 0/0:50,5:55:65:0,65,1294 0/0:47,7:56:30:0,30,1107 0/0:58,4:62:16:0,16,1146 0/1:47,10:59:86:86,0,1186 +chr6 146350573 . C T 71.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.261;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.4138;MLEAC=4;MLEAF=0.500;MQ=19.07;MQ0=0;MQRankSum=2.862;QD=1.44;ReadPosRankSum=0.340;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:3:0,3,26 1/1:13,2:15:6:50,6,0 0/1:17,2:19:35:42,0,35 0/1:14,2:16:23:23,0,46 +chr6 146755842 rs9373491 C A 233.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.378;DB;DP=45;Dels=0.00;FS=1.560;HaplotypeScore=4.7758;MLEAC=3;MLEAF=0.375;MQ=28.93;MQ0=0;MQRankSum=0.292;QD=6.68;ReadPosRankSum=-0.960;SB=-4.498e+01 GT:AD:DP:GQ:PL 0/0:10,0:10:30:0,30,330 0/1:6,3:9:67:67,0,95 0/1:11,6:17:99:165,0,264 0/1:7,2:9:45:45,0,155 +chr6 147091679 . A T 47.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.388;DP=138;Dels=0.01;FS=9.251;HaplotypeScore=7.6500;MLEAC=3;MLEAF=0.375;MQ=32.28;MQ0=0;MQRankSum=-2.125;QD=0.51;ReadPosRankSum=2.314;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:41,3:44:12:12,0,814 0/0:40,3:43:42:0,42,760 0/1:23,4:27:66:66,0,387 0/1:20,2:22:12:12,0,463 +chr6 147646180 . C A 210.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.889;DP=152;Dels=0.01;FS=64.421;HaplotypeScore=5.7991;MLEAC=3;MLEAF=0.375;MQ=31.02;MQ0=0;MQRankSum=-3.283;QD=2.05;ReadPosRankSum=2.360;SB=0.067 GT:AD:DP:GQ:PL 0/1:38,7:45:80:80,0,878 0/1:35,9:44:99:150,0,704 0/0:46,2:48:68:0,68,996 0/1:12,2:14:24:24,0,218 +chr6 147830030 . G C 61.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.548;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.2021;MLEAC=4;MLEAF=0.500;MQ=29.93;MQ0=0;MQRankSum=-1.209;QD=0.91;ReadPosRankSum=-0.121;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:30:30,0,190 0/1:20,3:23:21:21,0,315 0/1:15,2:17:29:29,0,242 0/1:14,2:16:24:24,0,266 +chr6 148854984 rs2294787 G A 1651.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.634;DB;DP=314;Dels=0.00;FS=3.889;HaplotypeScore=5.6826;MLEAC=3;MLEAF=0.375;MQ=33.61;MQ0=0;MQRankSum=1.376;QD=7.79;ReadPosRankSum=2.681;SB=-5.980e+02 GT:AD:DP:GQ:PL 0/1:43,21:64:99:651,0,1097 0/0:102,0:102:99:0,250,3025 0/1:52,24:76:99:631,0,1383 0/1:52,19:71:99:413,0,1232 +chr6 148969654 rs56278915 C T 654.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.935;DB;DP=70;Dels=0.00;FS=5.751;HaplotypeScore=3.2847;MLEAC=4;MLEAF=0.500;MQ=28.59;MQ0=0;MQRankSum=0.202;QD=13.09;ReadPosRankSum=0.825;SB=-1.168e-02 GT:AD:DP:GQ:PL 1/1:1,16:17:36:429,36,0 0/0:20,0:20:48:0,48,564 0/1:11,4:15:83:83,0,204 0/1:10,8:18:99:191,0,186 +chr6 149628073 rs577672 C T 45.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.495;DB;DP=17;Dels=0.00;FS=3.282;HaplotypeScore=0.6651;MLEAC=4;MLEAF=1.00;MQ=12.97;MQ0=0;MQRankSum=1.495;QD=4.50;ReadPosRankSum=0.198;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,1:5:3:37,3,0 ./. 1/1:4,1:5:3:41,3,0 ./. +chr6 150111105 . G T 191.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.562;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=35.08;MQ0=0;MQRankSum=-3.346;QD=2.06;ReadPosRankSum=-1.923;SB=-3.191e-03 GT:AD:DP:GQ:PL 0/1:42,7:49:99:125,0,865 0/0:48,2:50:54:0,54,1342 0/1:37,7:44:99:108,0,899 0/0:16,0:16:30:0,30,376 +chr6 150299972 . G A 40.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.867;DP=121;Dels=0.00;FS=11.993;HaplotypeScore=8.8389;MLEAC=3;MLEAF=0.375;MQ=14.85;MQ0=0;MQRankSum=2.959;QD=0.62;ReadPosRankSum=0.568;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:9:0,9,82 0/1:28,3:31:21:26,0,21 1/1:32,2:34:6:58,6,0 0/0:33,0:33:6:0,6,56 +chr6 151546936 rs113317578 A C 59.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.661;DB;DP=94;Dels=0.00;FS=57.702;HaplotypeScore=2.6838;MLEAC=3;MLEAF=0.375;MQ=15.70;MQ0=0;MQRankSum=2.700;QD=0.84;ReadPosRankSum=1.202;SB=29.80 GT:AD:DP:GQ:PL 0/1:21,3:24:32:32,0,115 0/1:21,3:24:20:20,0,74 0/0:22,0:23:3:0,3,29 0/1:20,3:23:48:48,0,67 +chr6 151626907 . C G 255.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.468;DP=119;Dels=0.01;FS=95.322;HaplotypeScore=8.0162;MLEAC=4;MLEAF=0.500;MQ=33.21;MQ0=0;MQRankSum=-2.982;QD=2.15;ReadPosRankSum=-0.692;SB=0.229 GT:AD:DP:GQ:PL 0/1:27,3:30:16:16,0,803 0/1:25,5:30:85:85,0,682 0/1:28,7:35:99:122,0,643 0/1:18,4:23:75:75,0,460 +chr6 151670172 rs3734799 A C 794.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.298;DB;DP=184;Dels=0.02;FS=10.389;HaplotypeScore=12.0461;MLEAC=3;MLEAF=0.375;MQ=29.24;MQ0=0;MQRankSum=-1.032;QD=5.84;ReadPosRankSum=-0.959;SB=-2.740e+02 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,123,1464 0/1:30,20:50:99:458,0,593 0/1:39,8:47:99:138,0,823 0/1:26,10:36:99:242,0,474 +chr6 151670276 . A G 153.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.475;DP=210;Dels=0.00;FS=18.752;HaplotypeScore=12.9195;MLEAC=3;MLEAF=0.375;MQ=33.24;MQ0=0;MQRankSum=-0.426;QD=0.97;ReadPosRankSum=0.717;SB=-5.135e-02 GT:AD:DP:GQ:PL 0/0:50,2:52:69:0,69,1057 0/1:49,5:55:69:69,0,856 0/1:40,3:43:22:22,0,559 0/1:53,7:60:99:106,0,699 +chr6 151671110 . TTC T 504.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.142;DP=131;FS=44.439;HaplotypeScore=38.2716;MLEAC=4;MLEAF=0.500;MQ=17.36;MQ0=0;MQRankSum=0.577;QD=3.85;ReadPosRankSum=-5.209;SB=-1.700e-03 GT:AD:DP:GQ:PL 0/1:25,3:13:42:42,0,443 0/1:27,2:13:99:116,0,330 0/1:30,10:17:99:231,0,325 0/1:26,5:15:99:167,0,304 +chr6 151671578 . T C 132.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.905;DP=186;Dels=0.01;FS=75.989;HaplotypeScore=11.7341;MLEAC=4;MLEAF=0.500;MQ=35.81;MQ0=0;MQRankSum=-5.323;QD=0.71;ReadPosRankSum=0.497;SB=-5.507e-01 GT:AD:DP:GQ:PL 0/1:40,6:46:50:50,0,1296 0/1:41,5:46:8:8,0,1127 0/1:45,6:51:49:49,0,1336 0/1:36,6:42:67:67,0,989 +chr6 152332875 . G T 146.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.897;DP=141;Dels=0.03;FS=34.948;HaplotypeScore=19.5972;MLEAC=4;MLEAF=0.500;MQ=30.63;MQ0=0;MQRankSum=-1.053;QD=1.04;ReadPosRankSum=2.874;SB=-1.146e+00 GT:AD:DP:GQ:PL 0/1:34,2:36:6:6,0,520 0/1:34,5:39:53:53,0,554 0/1:26,8:35:99:118,0,541 0/1:25,2:27:11:11,0,444 +chr6 152476143 . G T 91.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.277;DP=162;Dels=0.01;FS=39.162;HaplotypeScore=31.2299;MLEAC=2;MLEAF=0.250;MQ=27.98;MQ0=0;MQRankSum=-0.289;QD=1.29;ReadPosRankSum=1.289;SB=0.761 GT:AD:DP:GQ:PL 0/1:38,4:43:60:60,0,525 0/0:44,2:46:60:0,60,660 0/0:43,0:44:60:0,60,667 0/1:23,3:27:73:73,0,176 +chr6 152570415 rs6557210 G A 2040.79 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.062;DB;DP=94;Dels=0.01;FS=2.037;HaplotypeScore=1.2381;MLEAC=6;MLEAF=0.750;MQ=32.02;MQ0=0;MQRankSum=-1.731;QD=21.71;ReadPosRankSum=0.580;SB=-9.200e+01 GT:AD:DP:GQ:PL 0/1:15,16:31:99:421,0,469 0/1:10,20:30:99:618,0,202 1/1:1,21:22:63:722,63,0 1/1:1,9:10:27:326,27,0 +chr6 152590261 . A G 225.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.510;DP=95;Dels=0.00;FS=8.172;HaplotypeScore=2.8165;MLEAC=4;MLEAF=0.500;MQ=29.58;MQ0=0;MQRankSum=-2.453;QD=2.38;ReadPosRankSum=2.084;SB=-9.494e+01 GT:AD:DP:GQ:PL 0/1:18,7:25:86:86,0,328 0/1:23,7:30:99:126,0,227 0/1:25,3:29:41:41,0,397 0/1:10,1:11:15:15,0,162 +chr6 152631022 . T A 58.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.729;DP=91;Dels=0.00;FS=14.927;HaplotypeScore=11.2569;MLEAC=3;MLEAF=0.375;MQ=24.42;MQ0=0;MQRankSum=1.043;QD=0.77;ReadPosRankSum=0.957;SB=0.106 GT:AD:DP:GQ:PL 0/0:15,0:15:21:0,21,219 0/1:24,1:25:10:10,0,151 0/1:26,4:30:46:46,0,220 0/1:18,2:21:22:45,0,22 +chr6 152707063 rs9478329 C T 38.29 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.184;DB;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=34.93;MQ0=0;MQRankSum=-0.606;QD=2.95;ReadPosRankSum=1.713;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:13:74:74,0,302 0/0:14,0:14:36:0,36,437 0/0:11,0:11:30:0,30,411 0/0:3,0:3:6:0,6,77 +chr6 152720877 rs112061681 G C 194.42 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.003;DB;DP=190;Dels=0.01;FS=35.592;HaplotypeScore=16.0538;MLEAC=3;MLEAF=0.375;MQ=25.88;MQ0=0;MQRankSum=1.116;QD=1.43;ReadPosRankSum=0.408;SB=0.331 GT:AD:DP:GQ:PL 0/1:38,4:42:13:13,0,357 0/1:47,3:50:32:32,0,373 0/0:52,2:54:12:0,12,763 0/1:34,9:43:99:192,0,144 +chr6 152826354 . T G 78.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.894;DP=108;Dels=0.00;FS=13.195;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=39.89;MQ0=0;MQRankSum=-1.808;QD=1.52;ReadPosRankSum=-1.088;SB=0.629 GT:AD:DP:GQ:PL 0/0:29,0:29:63:0,63,832 0/1:28,3:31:16:16,0,834 0/0:26,1:27:22:0,22,539 0/1:17,4:21:99:104,0,379 +chr6 152847335 rs2141152 G A 148.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.598;DB;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.2294;MLEAC=1;MLEAF=0.125;MQ=33.67;MQ0=0;MQRankSum=-1.439;QD=5.32;ReadPosRankSum=1.475;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,8:28:99:185,0,533 0/0:26,0:26:63:0,63,781 0/0:38,0:38:99:0,99,1252 0/0:20,0:21:51:0,51,641 +chr6 153043495 . A T 41.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.335;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=1.6618;MLEAC=2;MLEAF=0.250;MQ=29.17;MQ0=0;MQRankSum=-0.410;QD=1.60;ReadPosRankSum=-0.559;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:19:19,0,250 0/1:6,2:8:55:63,0,55 0/0:6,0:6:12:0,12,131 0/0:5,0:5:6:0,6,57 +chr6 153344531 rs685449 T A 578.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.179;DB;DP=91;Dels=0.02;FS=1.029;HaplotypeScore=2.9799;MLEAC=3;MLEAF=0.375;MQ=35.17;MQ0=0;MQRankSum=-0.818;QD=8.90;ReadPosRankSum=1.870;SB=-1.719e+02 GT:AD:DP:GQ:PL 0/0:26,0:26:69:0,69,880 0/1:15,9:24:99:265,0,306 0/1:17,10:27:99:305,0,456 0/1:10,2:12:52:52,0,295 +chr6 154567676 rs7759388 G A 1237.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.269;DB;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9732;MLEAC=3;MLEAF=0.375;MQ=35.73;MQ0=0;MQRankSum=-1.753;QD=11.57;ReadPosRankSum=1.014;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,99,1278 0/1:30,16:46:99:453,0,672 0/1:24,22:46:99:723,0,408 0/1:11,4:15:99:105,0,290 +chr6 155485535 rs1032140 G A 1971.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.455;DB;DP=98;Dels=0.02;FS=3.492;HaplotypeScore=0.7416;MLEAC=7;MLEAF=0.875;MQ=27.67;MQ0=0;MQRankSum=0.377;QD=20.12;ReadPosRankSum=0.360;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:37:731,37,0 0/1:19,8:27:99:196,0,446 1/1:3,22:25:34:670,34,0 1/1:3,15:18:39:419,39,0 +chr6 155485614 . G C 31.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.240;DP=203;Dels=0.00;FS=13.593;HaplotypeScore=3.5711;MLEAC=1;MLEAF=0.125;MQ=36.33;MQ0=0;MQRankSum=-1.267;QD=0.84;ReadPosRankSum=0.297;SB=0.478 GT:AD:DP:GQ:PL 0/0:50,2:52:53:0,53,1270 0/0:48,2:50:64:0,64,1351 0/0:61,1:62:99:0,117,1716 0/1:31,5:38:68:68,0,677 +chr6 155489849 rs73795336 G A 61.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.268;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=29.76;MQ0=0;MQRankSum=1.099;QD=8.74;ReadPosRankSum=-0.423;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:9:0,9,112 1/1:0,2:2:6:82,6,0 0/1:4,1:5:23:23,0,71 0/0:3,0:3:6:0,6,73 +chr6 155561691 . A T 53.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.880;DP=125;Dels=0.00;FS=13.191;HaplotypeScore=5.5316;MLEAC=2;MLEAF=0.250;MQ=34.41;MQ0=0;MQRankSum=-2.358;QD=0.80;ReadPosRankSum=1.037;SB=-1.331e-02 GT:AD:DP:GQ:PL 0/0:28,0:28:57:0,57,737 0/1:29,5:34:56:56,0,661 0/0:30,0:30:72:0,72,894 0/1:30,3:33:39:39,0,549 +chr6 155561877 rs41284216 C T 852.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.525;DB;DP=85;Dels=0.00;FS=9.970;HaplotypeScore=0.7193;MLEAC=3;MLEAF=0.375;MQ=37.14;MQ0=0;MQRankSum=-1.360;QD=14.45;ReadPosRankSum=0.057;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:11,10:21:99:345,0,370 0/0:26,0:26:78:0,78,995 0/1:12,8:20:99:239,0,395 0/1:9,9:18:99:312,0,169 +chr6 157521844 . C T 101.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.527;DP=103;Dels=0.01;FS=104.594;HaplotypeScore=8.0701;MLEAC=3;MLEAF=0.375;MQ=28.91;MQ0=0;MQRankSum=-0.392;QD=1.23;ReadPosRankSum=0.280;SB=-2.118e+00 GT:AD:DP:GQ:PL 0/0:18,2:20:6:0,6,468 0/1:19,6:25:88:88,0,391 0/1:31,3:34:30:30,0,629 0/1:21,2:23:26:26,0,387 +chr6 157521971 . G C 232.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.578;DP=77;Dels=0.00;FS=22.013;HaplotypeScore=5.6670;MLEAC=4;MLEAF=0.500;MQ=26.21;MQ0=0;MQRankSum=0.116;QD=3.02;ReadPosRankSum=0.968;SB=-1.109e-01 GT:AD:DP:GQ:PL 0/1:12,5:17:74:74,0,200 0/1:15,2:17:6:6,0,178 0/1:17,3:20:40:40,0,254 0/1:16,7:23:99:154,0,144 +chr6 157528777 . A C 202.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.870;DP=260;Dels=0.00;FS=144.259;HaplotypeScore=2.9551;MLEAC=3;MLEAF=0.375;MQ=32.34;MQ0=0;MQRankSum=1.130;QD=1.02;ReadPosRankSum=2.657;SB=0.728 GT:AD:DP:GQ:PL 0/1:55,7:62:78:78,0,1461 0/1:57,10:67:99:111,0,1659 0/1:61,7:69:57:57,0,1729 0/0:57,4:61:20:0,20,1460 +chr6 157787428 rs17541381 A T 169.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.279;DB;DP=38;Dels=0.00;FS=1.639;HaplotypeScore=0.2500;MLEAC=3;MLEAF=0.375;MQ=33.10;MQ0=0;MQRankSum=-0.280;QD=7.72;ReadPosRankSum=0.480;SB=-8.207e+01 GT:AD:DP:GQ:PL 0/1:4,4:8:99:130,0,106 0/0:16,0:16:30:0,30,387 0/1:5,2:7:64:64,0,107 0/1:6,1:7:19:19,0,116 +chr6 157963550 rs17165416 T C 1677.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.235;DB;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=0.9901;MLEAC=4;MLEAF=0.500;MQ=33.63;MQ0=0;MQRankSum=-1.625;QD=19.28;ReadPosRankSum=0.172;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,26:28:59:940,59,0 0/0:29,0:29:75:0,75,911 0/1:14,11:25:99:321,0,395 0/1:18,15:33:99:465,0,485 +chr6 158502593 . T G 80.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.306;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.4442;MLEAC=3;MLEAF=0.375;MQ=32.06;MQ0=0;MQRankSum=-1.384;QD=1.91;ReadPosRankSum=0.413;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:14:69:79,0,69 0/0:22,0:22:51:0,51,572 0/1:15,2:17:30:30,0,188 0/1:10,1:11:14:14,0,124 +chr6 158516798 . C G 85.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.463;DP=191;Dels=0.00;FS=101.839;HaplotypeScore=6.1107;MLEAC=3;MLEAF=0.375;MQ=32.22;MQ0=0;MQRankSum=-3.454;QD=0.59;ReadPosRankSum=-0.644;SB=1.13 GT:AD:DP:GQ:PL 0/0:43,1:45:69:0,69,1135 0/1:39,6:45:49:49,0,1101 0/1:46,5:51:43:43,0,1195 0/1:43,7:50:37:37,0,1007 +chr6 158659315 . T A 140.58 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.689;DP=63;Dels=0.00;FS=48.323;HaplotypeScore=0.8987;MLEAC=3;MLEAF=0.375;MQ=25.77;MQ0=0;MQRankSum=2.562;QD=2.60;ReadPosRankSum=0.172;SB=3.68 GT:AD:DP:GQ:PL 0/1:11,1:12:17:17,0,95 0/1:17,5:22:99:146,0,219 0/1:18,2:20:20:20,0,317 0/0:9,0:9:9:0,9,106 +chr6 159210489 . TC T 349.08 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.966;DP=129;FS=56.500;HaplotypeScore=63.7015;MLEAC=4;MLEAF=0.500;MQ=30.80;MQ0=0;MQRankSum=-2.160;QD=2.71;ReadPosRankSum=-1.986;SB=-5.402e-01 GT:AD:DP:GQ:PL 0/1:26,5:32:99:183,0,782 0/1:32,2:29:8:8,0,872 0/1:27,4:31:52:52,0,871 0/1:18,6:17:99:157,0,332 +chr6 159657266 . T G 423.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.008;DP=317;Dels=0.00;FS=232.894;HaplotypeScore=1.9472;MLEAC=2;MLEAF=0.250;MQ=38.31;MQ0=0;MQRankSum=-3.184;QD=2.14;ReadPosRankSum=4.036;SB=-1.851e+00 GT:AD:DP:GQ:PL 0/0:84,7:91:6:0,6,2365 0/1:81,16:97:99:304,0,2394 0/1:89,12:101:99:160,0,2500 0/0:27,1:28:12:0,12,567 +chr6 160103611 . T A 183.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.795;DP=95;Dels=0.00;FS=3.133;HaplotypeScore=6.1252;MLEAC=4;MLEAF=0.500;MQ=32.09;MQ0=0;MQRankSum=-1.173;QD=1.94;ReadPosRankSum=-1.025;SB=-1.219e+01 GT:AD:DP:GQ:PL 0/1:29,7:36:99:173,0,529 0/1:24,3:28:22:22,0,441 0/1:22,2:25:4:4,0,449 0/1:5,1:6:26:26,0,26 +chr6 160163061 . T G 91.72 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.278;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.2247;MLEAC=4;MLEAF=0.667;MQ=24.91;MQ0=0;MQRankSum=0.278;QD=7.06;ReadPosRankSum=2.520;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,4:6:9:88,9,0 0/1:5,2:7:17:44,0,17 0/0:6,1:7:3:0,3,23 ./. +chr6 160165892 rs2842978 G C 46.22 . AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=23.17;MQ0=0;QD=15.41;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3:35,3,0 1/1:0,2:2:6:45,6,0 +chr6 160370494 . C A 31.03 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.221;DP=17;Dels=0.00;FS=3.010;HaplotypeScore=1.4833;MLEAC=5;MLEAF=0.833;MQ=17.84;MQ0=0;MQRankSum=1.221;QD=4.43;ReadPosRankSum=1.221;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:3:0,3,29 1/1:1,2:3:6:46,6,0 1/1:3,1:4:3:24,3,0 ./. +chr6 160465718 . T C 39.26 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.398;DP=37;Dels=0.00;FS=2.667;HaplotypeScore=6.1689;MLEAC=3;MLEAF=0.750;MQ=19.85;MQ0=0;MQRankSum=1.246;QD=1.57;ReadPosRankSum=1.034;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:7,2:9:37:45,0,37 1/1:14,2:16:3:29,3,0 ./. +chr6 160899644 . T A 134.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.315;DP=217;Dels=0.00;FS=66.675;HaplotypeScore=2.2868;MLEAC=3;MLEAF=0.375;MQ=13.17;MQ0=0;MQRankSum=2.090;QD=0.86;ReadPosRankSum=3.862;SB=-2.818e+00 GT:AD:DP:GQ:PL 0/0:60,1:61:18:0,18,165 0/1:36,8:44:58:89,0,58 0/1:51,7:58:39:39,0,140 0/1:46,6:53:50:50,0,132 +chr6 160953794 . G C 31.27 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.693;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.5515;MLEAC=4;MLEAF=0.667;MQ=15.52;MQ0=0;MQRankSum=2.205;QD=1.56;ReadPosRankSum=-0.315;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:7,1:8:3:32,3,0 1/1:11,1:12:3:37,3,0 ./. 0/0:8,0:8:3:0,3,25 +chr6 161137523 rs4252108 T A 108.21 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.380;DB;DP=7;Dels=0.00;FS=3.680;HaplotypeScore=0.9923;MLEAC=3;MLEAF=0.750;MQ=32.89;MQ0=0;MQRankSum=0.000;QD=18.03;ReadPosRankSum=-0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,1:2:31:31,0,38 1/1:1,3:4:9:114,9,0 ./. ./. +chr6 161519395 . C T 216.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.644;DP=222;Dels=0.00;FS=64.957;HaplotypeScore=4.1849;MLEAC=4;MLEAF=0.500;MQ=27.06;MQ0=0;MQRankSum=1.258;QD=0.98;ReadPosRankSum=0.138;SB=-8.342e-02 GT:AD:DP:GQ:PL 0/1:45,3:48:17:17,0,743 0/1:47,5:52:76:76,0,741 0/1:57,6:63:81:81,0,994 0/1:51,7:58:85:85,0,584 +chr6 165693624 rs1413100 C T 528.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.041;DB;DP=113;Dels=0.00;FS=4.644;HaplotypeScore=2.6273;MLEAC=2;MLEAF=0.250;MQ=33.26;MQ0=0;MQRankSum=-1.835;QD=9.11;ReadPosRankSum=1.537;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,12:27:99:354,0,453 0/1:21,10:31:99:216,0,545 0/0:42,0:42:99:0,108,1411 0/0:13,0:13:30:0,30,362 +chr6 165801790 rs1511746 G A 1095.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.573;DB;DP=204;Dels=0.01;FS=34.321;HaplotypeScore=11.3646;MLEAC=4;MLEAF=0.500;MQ=34.33;MQ0=0;MQRankSum=1.349;QD=7.40;ReadPosRankSum=0.656;SB=-2.530e+02 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,150,1916 1/1:19,21:40:60:725,60,0 0/1:53,10:63:99:260,0,1302 0/1:36,7:43:99:159,0,703 +chr6 165862393 . A T 675.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.780;DP=70;Dels=0.01;FS=12.085;HaplotypeScore=4.8279;MLEAC=4;MLEAF=0.500;MQ=28.37;MQ0=0;MQRankSum=-1.048;QD=9.65;ReadPosRankSum=2.187;SB=0.617 GT:AD:DP:GQ:PL 0/1:13,8:21:99:226,0,188 0/1:9,8:17:24:163,0,24 0/1:13,11:24:99:288,0,104 0/1:5,2:7:41:41,0,56 +chr6 166737980 rs4710041 G A 836.91 . AC=7;AF=0.875;AN=8;BaseQRankSum=-1.013;DB;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.4863;MLEAC=7;MLEAF=0.875;MQ=37.21;MQ0=0;MQRankSum=-1.545;QD=22.62;ReadPosRankSum=-0.282;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:24:326,24,0 0/1:11,6:17:99:138,0,390 1/1:0,9:9:24:320,24,0 1/1:0,3:3:9:97,9,0 +chr6 166741921 rs9459653 T A 32.39 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.443;DB;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=6.1802;MLEAC=3;MLEAF=0.375;MQ=21.56;MQ0=0;MQRankSum=-0.289;QD=1.62;ReadPosRankSum=0.206;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:18:26,0,18 0/0:12,2:14:12:0,12,120 0/1:5,1:6:14:14,0,53 0/1:5,2:7:35:35,0,43 +chr6 166974222 rs3799620 T C 44.25 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.666;DB;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.4548;MLEAC=4;MLEAF=0.667;MQ=19.65;MQ0=0;MQRankSum=1.179;QD=7.37;ReadPosRankSum=-0.762;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,42 ./. 1/1:2,1:3:3:41,3,0 1/1:2,1:3:3:41,3,0 +chr6 168167623 rs9364311 G T 236.63 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.473;DB;DP=15;Dels=0.00;FS=3.979;HaplotypeScore=0.3670;MLEAC=5;MLEAF=0.625;MQ=27.11;MQ0=0;MQRankSum=1.827;QD=15.78;ReadPosRankSum=-0.295;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,3:5:9:95,9,0 0/1:2,3:5:21:97,0,21 0/1:1,2:3:22:69,0,22 0/1:1,1:2:20:20,0,25 +chr6 168226873 . G A 57.66 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.579;DP=153;Dels=0.01;FS=10.818;HaplotypeScore=8.6733;MLEAC=3;MLEAF=0.375;MQ=20.75;MQ0=0;MQRankSum=0.796;QD=0.49;ReadPosRankSum=2.116;SB=-1.443e+01 GT:AD:DP:GQ:PL 0/0:32,2:35:10:0,10,264 0/1:32,3:35:12:12,0,306 0/1:45,6:52:44:44,0,503 0/1:26,3:30:44:44,0,119 +chr6 168227263 . G A 174.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.931;DP=48;Dels=0.02;FS=7.555;HaplotypeScore=6.2689;MLEAC=3;MLEAF=0.375;MQ=20.80;MQ0=0;MQRankSum=-1.766;QD=4.05;ReadPosRankSum=0.710;SB=-1.988e+01 GT:AD:DP:GQ:PL 0/0:4,1:5:3:0,3,32 0/1:8,8:16:17:98,0,17 0/1:6,7:13:17:100,0,17 0/1:11,2:13:17:17,0,79 +chr6 168265356 . G T 89.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.770;DP=320;Dels=0.00;FS=81.641;HaplotypeScore=5.1129;MLEAC=1;MLEAF=0.125;MQ=35.32;MQ0=0;MQRankSum=-3.333;QD=1.45;ReadPosRankSum=1.843;SB=-3.864e+00 GT:AD:DP:GQ:PL 0/0:90,2:92:99:0,145,2468 0/0:67,4:72:36:0,36,1903 0/0:92,2:94:99:0,167,2580 0/1:54,8:62:99:126,0,1166 +chr6 168273088 . T A 101.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.351;DP=115;Dels=0.01;FS=24.166;HaplotypeScore=5.1581;MLEAC=3;MLEAF=0.375;MQ=28.55;MQ0=0;MQRankSum=-1.079;QD=1.20;ReadPosRankSum=1.251;SB=0.802 GT:AD:DP:GQ:PL 0/0:29,1:30:22:0,22,507 0/1:27,5:32:54:54,0,394 0/1:35,6:41:75:75,0,613 0/1:9,1:11:16:16,0,71 +chr6 168280925 rs2301532 A G 1319.21 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.036;DB;DP=54;Dels=0.00;FS=11.802;HaplotypeScore=1.6973;MLEAC=7;MLEAF=0.875;MQ=32.36;MQ0=0;MQRankSum=1.543;QD=24.43;ReadPosRankSum=-0.071;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,17:18:51:642,51,0 0/1:12,4:16:99:103,0,347 1/1:1,16:17:45:552,45,0 1/1:1,2:3:6:66,6,0 +chr6 168468186 rs6906979 G T 1462.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.194;DB;DP=105;Dels=0.00;FS=9.231;HaplotypeScore=2.1597;MLEAC=5;MLEAF=0.625;MQ=33.75;MQ0=0;MQRankSum=-0.908;QD=13.93;ReadPosRankSum=0.357;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,27:29:75:965,75,0 0/1:21,8:29:99:217,0,518 0/1:22,10:32:99:256,0,638 0/1:12,3:15:70:70,0,335 +chr6 168689657 rs6924136 G A 430.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.620;DB;DP=159;Dels=0.01;FS=1.438;HaplotypeScore=1.1128;MLEAC=3;MLEAF=0.375;MQ=16.19;MQ0=0;MQRankSum=0.968;QD=3.91;ReadPosRankSum=0.945;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,30:34:3:269,0,3 0/0:49,0:49:18:0,18,207 0/1:32,18:50:87:87,0,214 0/1:16,8:24:99:117,0,99 +chr6 168927130 . C T 51.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.659;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.2359;MLEAC=2;MLEAF=0.250;MQ=37.86;MQ0=0;MQRankSum=-4.624;QD=0.95;ReadPosRankSum=-0.186;SB=-4.211e-01 GT:AD:DP:GQ:PL 0/0:29,1:30:33:0,33,794 0/1:28,4:32:12:12,0,789 0/0:40,1:41:63:0,63,1116 0/1:17,5:22:80:80,0,591 +chr6 168947801 . G T 519.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.155;DP=186;Dels=0.04;FS=108.482;HaplotypeScore=37.5678;MLEAC=4;MLEAF=0.500;MQ=27.52;MQ0=0;MQRankSum=-1.051;QD=2.79;ReadPosRankSum=-0.563;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:42,9:51:99:170,0,822 0/1:34,12:47:99:182,0,407 0/1:37,8:45:99:157,0,582 0/1:29,6:35:53:53,0,533 +chr6 169620246 . C G 111.14 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.665;DP=183;Dels=0.01;FS=212.689;HaplotypeScore=5.7943;MLEAC=3;MLEAF=0.375;MQ=32.40;MQ0=0;MQRankSum=-4.837;QD=0.83;ReadPosRankSum=-1.289;SB=-1.258e+00 GT:AD:DP:GQ:PL 0/0:45,3:48:12:0,12,1198 0/1:38,8:46:84:84,0,1136 0/1:44,5:50:23:23,0,1180 0/1:30,6:37:47:47,0,825 +chr6 169632098 . T G 491.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.799;DP=63;Dels=0.02;FS=9.569;HaplotypeScore=3.3080;MLEAC=4;MLEAF=0.500;MQ=30.23;MQ0=0;MQRankSum=-2.610;QD=7.80;ReadPosRankSum=4.739;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:82:82,0,200 0/1:6,9:15:99:178,0,115 0/1:13,5:18:99:111,0,294 0/1:7,7:15:85:163,0,85 +chr6 170036627 . C T 129.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.721;DP=110;Dels=0.03;FS=0.000;HaplotypeScore=15.3511;MLEAC=3;MLEAF=0.375;MQ=27.56;MQ0=0;MQRankSum=-3.214;QD=1.88;ReadPosRankSum=1.331;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,6:26:73:73,0,409 0/1:30,6:36:82:82,0,367 0/0:37,2:39:10:0,10,536 0/1:5,1:6:17:17,0,101 +chr6 170337340 rs73025477 C T 133.76 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.731;DB;DP=7;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=31.52;MQ0=0;MQRankSum=0.731;QD=26.75;ReadPosRankSum=-0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:41,3,0 ./. 1/1:1,3:4:9:127,9,0 +chr6 170594088 . T C 75.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.304;DP=80;Dels=0.00;FS=20.048;HaplotypeScore=7.7990;MLEAC=2;MLEAF=0.250;MQ=32.37;MQ0=0;MQRankSum=-3.734;QD=2.29;ReadPosRankSum=0.216;SB=0.625 GT:AD:DP:GQ:PL 0/0:19,2:21:18:0,18,472 0/1:17,4:21:71:71,0,298 0/0:25,1:26:48:0,48,572 0/1:9,3:12:46:46,0,208 +chr6 170626652 . G T 58.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.569;DP=232;Dels=0.01;FS=28.261;HaplotypeScore=6.4802;MLEAC=3;MLEAF=0.375;MQ=37.30;MQ0=0;MQRankSum=-3.343;QD=0.32;ReadPosRankSum=-0.265;SB=-1.824e-01 GT:AD:DP:GQ:PL 0/1:62,5:67:22:22,0,1542 0/1:57,6:63:17:17,0,1663 0/0:49,0:49:99:0,102,1243 0/1:45,5:50:63:63,0,927 +chr6 170865979 . T G 32.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.493;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5155;MLEAC=3;MLEAF=0.375;MQ=27.38;MQ0=0;MQRankSum=-2.967;QD=1.01;ReadPosRankSum=3.080;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,1:17:27:0,27,316 0/1:10,2:12:16:16,0,147 0/1:8,3:11:46:46,0,83 0/1:4,4:9:13:13,0,84 +chr7 139663 rs10266603 C G 53.01 . AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=42.57;MQ0=0;QD=26.50;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3:42,3,0 1/1:0,1:1:3:44,3,0 +chr7 302742 rs148712790 C T 40.26 . AC=2;AF=0.500;AN=4;BaseQRankSum=-0.736;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=28.33;MQ0=0;MQRankSum=-0.736;QD=20.13;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,42 1/1:0,2:2:6:75,6,0 ./. ./. +chr7 397548 rs36158709 T G 75.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.406;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=23.79;MQ0=0;MQRankSum=1.537;QD=12.54;ReadPosRankSum=0.988;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:32,3,0 1/1:0,1:1:3:41,3,0 1/1:2,1:3:3:37,3,0 +chr7 624198 . G A 73.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.308;DP=43;Dels=0.02;FS=35.575;HaplotypeScore=6.6352;MLEAC=4;MLEAF=0.500;MQ=27.69;MQ0=0;MQRankSum=-3.015;QD=1.71;ReadPosRankSum=-0.031;SB=-1.243e+00 GT:AD:DP:GQ:PL 0/1:5,4:9:36:36,0,106 0/1:9,3:12:17:17,0,139 0/1:8,3:11:42:42,0,168 0/1:7,3:10:21:21,0,236 +chr7 808756 . C T 84.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.416;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.1080;MLEAC=3;MLEAF=0.375;MQ=25.52;MQ0=0;MQRankSum=1.116;QD=2.74;ReadPosRankSum=-2.210;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,1:11:26:26,0,63 0/1:9,3:12:67:79,0,67 0/0:11,1:12:21:0,21,227 0/1:7,1:8:22:23,0,22 +chr7 808810 rs6946758 C G 357.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.777;DB;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=1.0500;MLEAC=4;MLEAF=0.500;MQ=29.51;MQ0=0;MQRankSum=-0.038;QD=7.95;ReadPosRankSum=0.905;SB=-1.430e+02 GT:AD:DP:GQ:PL 0/1:10,4:14:99:108,0,283 0/1:5,4:9:99:109,0,150 0/1:4,5:9:61:135,0,61 0/1:10,2:12:48:48,0,182 +chr7 813650 rs62432869 G A 1791.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.423;DB;DP=130;Dels=0.00;FS=11.730;HaplotypeScore=1.0684;MLEAC=4;MLEAF=0.500;MQ=34.20;MQ0=0;MQRankSum=0.795;QD=13.78;ReadPosRankSum=0.259;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:13,15:28:99:518,0,299 0/1:22,12:34:99:366,0,628 0/1:17,16:33:99:501,0,342 0/1:19,16:35:99:449,0,520 +chr7 822453 . C G 59.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.518;DP=234;Dels=0.00;FS=81.180;HaplotypeScore=10.6406;MLEAC=4;MLEAF=0.500;MQ=17.21;MQ0=0;MQRankSum=2.134;QD=0.25;ReadPosRankSum=2.347;SB=-1.904e+00 GT:AD:DP:GQ:PL 0/1:44,4:48:2:2,0,169 0/1:56,6:62:24:24,0,291 0/1:60,3:63:60:60,0,213 0/1:51,9:60:14:14,0,557 +chr7 905739 . T G 416.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.304;DP=95;Dels=0.00;FS=2.480;HaplotypeScore=1.4738;MLEAC=4;MLEAF=0.500;MQ=32.77;MQ0=0;MQRankSum=2.402;QD=4.38;ReadPosRankSum=0.500;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,5:19:99:150,0,150 0/1:22,4:26:99:119,0,157 0/1:29,1:31:3:3,0,303 0/1:13,6:19:87:185,0,87 +chr7 943871 . C T 95.50 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.354;DP=67;Dels=0.01;FS=25.294;HaplotypeScore=0.9645;MLEAC=4;MLEAF=0.500;MQ=31.38;MQ0=0;MQRankSum=-1.843;QD=1.43;ReadPosRankSum=-1.818;SB=-8.265e-01 GT:AD:DP:GQ:PL 0/1:13,3:16:67:67,0,183 0/1:14,2:16:10:10,0,167 0/1:15,3:18:52:52,0,317 0/1:15,1:16:8:8,0,196 +chr7 944773 . T G 110.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.890;DP=100;Dels=0.00;FS=14.210;HaplotypeScore=1.9103;MLEAC=1;MLEAF=0.125;MQ=35.14;MQ0=0;MQRankSum=-0.426;QD=3.96;ReadPosRankSum=0.919;SB=0.125 GT:AD:DP:GQ:PL 0/0:21,0:21:36:0,36,417 0/0:15,0:15:39:0,39,423 0/0:35,1:36:52:0,52,856 0/1:22,6:28:99:147,0,361 +chr7 1037381 . G A 106.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.761;DP=54;Dels=0.00;FS=17.344;HaplotypeScore=3.2643;MLEAC=4;MLEAF=0.500;MQ=28.51;MQ0=0;MQRankSum=0.903;QD=1.98;ReadPosRankSum=-0.336;SB=-6.154e-02 GT:AD:DP:GQ:PL 0/1:12,1:13:21:21,0,110 0/1:13,3:16:54:54,0,88 0/1:15,3:18:21:21,0,282 0/1:5,2:7:22:53,0,22 +chr7 1131411 rs11544331 C T 216.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.561;DB;DP=86;Dels=0.01;FS=15.667;HaplotypeScore=11.1487;MLEAC=1;MLEAF=0.125;MQ=29.49;MQ0=0;MQRankSum=-0.103;QD=9.43;ReadPosRankSum=0.309;SB=-4.533e-03 GT:AD:DP:GQ:PL 0/1:14,9:23:99:253,0,296 0/0:23,0:23:48:0,48,503 0/0:20,0:21:42:0,42,520 0/0:18,0:18:45:0,45,571 +chr7 1478495 rs4492283 A G 634.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.315;DB;DP=139;Dels=0.01;FS=10.770;HaplotypeScore=4.9521;MLEAC=3;MLEAF=0.375;MQ=30.48;MQ0=0;MQRankSum=-2.864;QD=6.10;ReadPosRankSum=1.661;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/0:34,0:34:81:0,81,1011 0/1:27,10:37:99:210,0,631 0/1:23,13:36:99:268,0,679 0/1:21,10:31:99:200,0,506 +chr7 1536885 . G C 76.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.899;DP=43;Dels=0.02;FS=8.096;HaplotypeScore=6.1616;MLEAC=3;MLEAF=0.375;MQ=29.76;MQ0=0;MQRankSum=-2.321;QD=2.56;ReadPosRankSum=1.196;SB=0.065 GT:AD:DP:GQ:PL 0/1:5,5:10:70:70,0,87 0/1:9,2:11:31:31,0,155 0/0:13,0:13:21:0,21,267 0/1:7,1:8:19:19,0,94 +chr7 1538614 rs2289035 G A 51.53 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.054;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.2492;MLEAC=2;MLEAF=0.250;MQ=31.69;MQ0=0;MQRankSum=0.573;QD=8.59;ReadPosRankSum=-0.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,43 0/0:3,0:3:3:0,3,26 0/1:2,2:4:57:74,0,57 0/1:1,1:2:16:16,0,36 +chr7 2020045 . G A 32.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.094;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.7196;MLEAC=3;MLEAF=0.375;MQ=17.02;MQ0=0;MQRankSum=0.057;QD=0.87;ReadPosRankSum=2.850;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:39:39,0,89 0/1:8,2:10:17:17,0,19 0/0:8,0:8:6:0,6,44 0/1:10,3:13:18:18,0,37 +chr7 2565826 . C T 81.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.379;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.0662;MLEAC=3;MLEAF=0.375;MQ=26.08;MQ0=0;MQRankSum=-0.090;QD=2.19;ReadPosRankSum=1.199;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:15:15,0,58 0/0:13,1:14:21:0,21,218 0/1:13,1:14:17:17,0,109 0/1:7,4:11:46:92,0,46 +chr7 2566781 . T C 47 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.192;DP=41;Dels=0.00;FS=34.110;HaplotypeScore=1.5892;MLEAC=4;MLEAF=0.500;MQ=30.83;MQ0=0;MQRankSum=-0.448;QD=1.15;ReadPosRankSum=0.306;SB=-7.685e-01 GT:AD:DP:GQ:PL 0/1:5,2:7:40:40,0,139 0/1:9,1:10:23:23,0,142 0/1:13,1:14:11:11,0,277 0/1:9,1:10:15:15,0,180 +chr7 2617924 . C G 194.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.601;DP=127;Dels=0.02;FS=50.842;HaplotypeScore=17.4661;MLEAC=4;MLEAF=0.500;MQ=29.14;MQ0=0;MQRankSum=1.293;QD=1.53;ReadPosRankSum=0.839;SB=-1.235e-02 GT:AD:DP:GQ:PL 0/1:27,4:32:49:49,0,458 0/1:27,3:30:49:49,0,257 0/1:29,5:34:99:100,0,374 0/1:25,4:29:39:39,0,343 +chr7 2636522 rs73033691 T G 53 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.513;DB;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7142;MLEAC=1;MLEAF=0.125;MQ=34.09;MQ0=0;MQRankSum=-0.205;QD=5.30;ReadPosRankSum=-2.054;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:89:89,0,123 0/0:11,0:11:33:0,33,412 0/0:9,0:9:27:0,27,332 0/0:15,0:15:30:0,30,368 +chr7 2636689 rs12700146 C T 184.52 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.307;DB;DP=22;Dels=0.00;FS=5.643;HaplotypeScore=0.8675;MLEAC=3;MLEAF=0.375;MQ=32.36;MQ0=0;MQRankSum=-0.648;QD=10.25;ReadPosRankSum=-0.853;SB=-7.160e-02 GT:AD:DP:GQ:PL 0/1:1,3:4:29:92,0,29 0/0:4,0:4:9:0,9,100 0/1:6,1:7:17:17,0,169 0/1:3,4:7:95:118,0,95 +chr7 2649638 . C A 53.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.927;DP=52;Dels=0.00;FS=12.030;HaplotypeScore=15.4478;MLEAC=4;MLEAF=0.500;MQ=22.23;MQ0=0;MQRankSum=0.309;QD=1.04;ReadPosRankSum=-0.597;SB=-1.436e+00 GT:AD:DP:GQ:PL 0/1:10,1:11:18:18,0,54 0/1:10,1:11:12:12,0,104 0/1:18,2:20:29:29,0,206 0/1:8,2:10:37:37,0,56 +chr7 2649782 . A T 43.75 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.099;DP=106;Dels=0.05;FS=41.584;HaplotypeScore=14.8671;MLEAC=1;MLEAF=0.125;MQ=34.10;MQ0=0;MQRankSum=-0.881;QD=1.62;ReadPosRankSum=0.561;SB=-7.637e+00 GT:AD:DP:GQ:PL 0/0:19,1:20:16:0,16,605 0/0:26,0:27:69:0,69,862 0/0:25,2:28:2:0,2,634 0/1:21,4:26:79:79,0,524 +chr7 2771253 . C A 163.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.639;DP=178;Dels=0.00;FS=49.407;HaplotypeScore=5.7646;MLEAC=3;MLEAF=0.375;MQ=32.92;MQ0=0;MQRankSum=-2.226;QD=1.25;ReadPosRankSum=1.964;SB=1.83 GT:AD:DP:GQ:PL 0/1:32,7:39:99:116,0,627 0/0:46,1:47:59:0,59,998 0/1:53,4:57:10:10,0,1095 0/1:29,6:35:80:80,0,519 +chr7 2983853 . T C 169.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.337;DP=116;Dels=0.00;FS=9.446;HaplotypeScore=3.5016;MLEAC=3;MLEAF=0.375;MQ=35.16;MQ0=0;MQRankSum=0.238;QD=1.89;ReadPosRankSum=1.178;SB=2.27 GT:AD:DP:GQ:PL 0/1:22,5:27:99:104,0,469 0/1:28,3:31:51:51,0,565 0/1:28,4:32:57:57,0,543 0/0:25,1:26:6:0,6,393 +chr7 3186792 . T G 52.12 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.984;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3140;MLEAC=1;MLEAF=0.125;MQ=40.51;MQ0=0;MQRankSum=-2.501;QD=3.26;ReadPosRankSum=0.397;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,1:14:10:0,10,438 0/0:15,0:15:24:0,24,314 0/1:12,4:16:88:88,0,319 0/0:14,0:14:24:0,24,301 +chr7 4015426 rs7778547 T C 159.35 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.747;DB;DP=11;Dels=0.00;FS=15.563;HaplotypeScore=2.5617;MLEAC=6;MLEAF=1.00;MQ=25.95;MQ0=0;MQRankSum=0.747;QD=17.71;ReadPosRankSum=0.747;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:42,3,0 1/1:1,5:6:9:109,9,0 1/1:1,1:2:3:44,3,0 ./. +chr7 4017057 rs73038435 A G 327.98 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.386;DB;DP=56;Dels=0.00;FS=1.226;HaplotypeScore=1.2572;MLEAC=6;MLEAF=0.750;MQ=17.95;MQ0=0;MQRankSum=3.622;QD=5.86;ReadPosRankSum=-1.155;SB=-1.542e+02 GT:AD:DP:GQ:PL 0/1:11,1:12:22:22,0,126 0/1:15,3:18:32:69,0,32 1/1:5,8:13:21:217,21,0 1/1:10,3:13:6:65,6,0 +chr7 4825885 . A G 60.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.383;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.5816;MLEAC=3;MLEAF=0.375;MQ=29.44;MQ0=0;MQRankSum=-2.842;QD=0.93;ReadPosRankSum=1.666;SB=-2.586e-02 GT:AD:DP:GQ:PL 0/1:29,4:33:22:22,0,478 0/0:17,3:20:4:0,4,245 0/1:18,2:20:23:23,0,156 0/1:9,3:12:57:57,0,180 +chr7 4828489 . G A 54.37 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.466;DP=18;Dels=0.00;FS=3.424;HaplotypeScore=1.6484;MLEAC=5;MLEAF=0.625;MQ=21.51;MQ0=0;MQRankSum=-0.143;QD=3.02;ReadPosRankSum=0.143;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:3:23,3,0 0/1:3,1:4:16:16,0,21 0/1:6,2:8:26:26,0,70 1/1:1,1:2:3:31,3,0 +chr7 5002252 rs2965031 C T 38.26 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.026;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=25.55;MQ0=0;MQRankSum=1.026;QD=12.75;ReadPosRankSum=1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,27 1/1:0,1:1:3:43,3,0 ./. 1/1:1,1:2:3:33,3,0 +chr7 5036720 rs9639894 C T 44.34 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.207;DB;DP=33;Dels=0.00;FS=2.489;HaplotypeScore=0.4338;MLEAC=1;MLEAF=0.125;MQ=24.29;MQ0=0;MQRankSum=0.830;QD=4.93;ReadPosRankSum=2.765;SB=-1.567e+01 GT:AD:DP:GQ:PL 0/0:12,0:12:18:0,18,185 0/1:6,3:9:35:80,0,35 0/0:3,0:3:6:0,6,69 0/0:9,0:9:18:0,18,193 +chr7 5254061 rs28393199 G A 397.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.515;DB;DP=113;Dels=0.00;FS=35.994;HaplotypeScore=17.4022;MLEAC=3;MLEAF=0.375;MQ=29.33;MQ0=0;MQRankSum=2.436;QD=4.91;ReadPosRankSum=0.491;SB=-4.001e+00 GT:AD:DP:GQ:PL 0/0:32,0:32:78:0,78,850 0/1:22,6:28:99:179,0,340 0/1:21,6:27:99:175,0,398 0/1:21,5:26:87:87,0,325 +chr7 5346974 . C A 110.48 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.968;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=9.66;MQ0=0;MQRankSum=3.015;QD=5.02;ReadPosRankSum=2.241;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,1:8:3:0,3,29 ./. 1/1:9,3:12:9:67,9,0 1/1:7,3:10:9:85,9,0 +chr7 5398950 . A G 493.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.287;DP=203;Dels=0.00;FS=2.330;HaplotypeScore=9.3772;MLEAC=4;MLEAF=0.500;MQ=28.34;MQ0=0;MQRankSum=-1.740;QD=2.43;ReadPosRankSum=3.947;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:44,7:51:98:98,0,848 0/1:46,10:56:99:130,0,978 0/1:51,11:62:99:153,0,921 0/1:27,7:34:99:155,0,462 +chr7 5521477 . G T 177.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.514;DP=149;Dels=0.01;FS=57.512;HaplotypeScore=12.6349;MLEAC=2;MLEAF=0.250;MQ=30.46;MQ0=0;MQRankSum=-1.752;QD=2.57;ReadPosRankSum=1.066;SB=-5.703e+00 GT:AD:DP:GQ:PL 0/1:30,7:37:99:145,0,465 0/1:25,5:30:74:74,0,441 0/0:39,0:39:78:0,78,872 0/0:41,0:41:87:0,87,1026 +chr7 5567878 . T G 264.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.275;DP=180;Dels=0.01;FS=119.713;HaplotypeScore=12.5520;MLEAC=4;MLEAF=0.500;MQ=27.72;MQ0=0;MQRankSum=-4.497;QD=1.47;ReadPosRankSum=3.905;SB=-3.457e-02 GT:AD:DP:GQ:PL 0/1:35,10:45:99:135,0,510 0/1:34,11:47:80:80,0,519 0/1:43,7:51:70:70,0,540 0/1:29,6:36:22:22,0,407 +chr7 5965435 . T C 177.89 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.890;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=17.21;MQ0=0;MQRankSum=-1.149;QD=4.68;ReadPosRankSum=-0.259;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,12:15:12:111,12,0 0/1:7,5:12:14:48,0,14 1/1:7,4:11:6:59,6,0 ./. +chr7 6182684 . T A 216.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.236;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.5663;MLEAC=4;MLEAF=0.500;MQ=27.83;MQ0=0;MQRankSum=-4.613;QD=2.04;ReadPosRankSum=2.377;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,4:25:48:48,0,416 0/1:18,8:26:99:120,0,302 0/1:21,11:33:16:16,0,365 0/1:17,4:22:75:75,0,244 +chr7 6193658 . A G 60.35 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.976;DP=61;Dels=0.00;FS=27.313;HaplotypeScore=6.7625;MLEAC=2;MLEAF=0.250;MQ=28.99;MQ0=0;MQRankSum=-3.318;QD=1.63;ReadPosRankSum=0.742;SB=0.865 GT:AD:DP:GQ:PL 0/0:6,1:7:6:0,6,52 0/0:17,0:17:15:0,15,161 0/1:13,4:17:74:74,0,200 0/1:16,4:20:27:27,0,173 +chr7 6561639 . T C 41.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.858;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=2.4282;MLEAC=3;MLEAF=0.375;MQ=32.74;MQ0=0;MQRankSum=-0.633;QD=1.05;ReadPosRankSum=-0.225;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:23:23,0,115 0/1:13,1:14:20:20,0,123 0/0:15,0:15:21:0,21,228 0/1:11,2:13:42:42,0,124 +chr7 6754356 rs6947883 A G 367.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.872;DB;DP=201;Dels=0.00;FS=97.546;HaplotypeScore=15.5713;MLEAC=4;MLEAF=0.500;MQ=20.03;MQ0=0;MQRankSum=2.560;QD=1.83;ReadPosRankSum=-0.583;SB=-3.140e+01 GT:AD:DP:GQ:PL 0/1:46,4:51:40:40,0,341 0/1:52,8:60:90:90,0,281 0/1:35,15:50:99:246,0,126 0/1:37,3:40:34:34,0,153 +chr7 6756895 . T A 795.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.378;DP=238;Dels=0.00;FS=187.732;HaplotypeScore=11.7069;MLEAC=4;MLEAF=0.500;MQ=15.76;MQ0=0;MQRankSum=8.267;QD=3.34;ReadPosRankSum=1.949;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:39,12:51:51:138,0,51 0/1:51,11:62:99:190,0,164 0/1:55,20:75:99:419,0,205 0/1:41,8:49:91:91,0,219 +chr7 6756896 . G C 148.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.272;DP=239;Dels=0.00;FS=42.618;HaplotypeScore=11.6989;MLEAC=4;MLEAF=0.500;MQ=15.48;MQ0=0;MQRankSum=4.558;QD=0.62;ReadPosRankSum=0.213;SB=-1.007e-01 GT:AD:DP:GQ:PL 0/1:51,1:52:13:13,0,140 0/1:56,5:61:86:86,0,178 0/1:71,4:75:35:35,0,458 0/1:47,3:50:57:57,0,148 +chr7 6756920 . G T 37.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.191;DP=144;Dels=0.00;FS=41.312;HaplotypeScore=2.8332;MLEAC=3;MLEAF=0.375;MQ=11.21;MQ0=0;MQRankSum=3.203;QD=0.47;ReadPosRankSum=-1.116;SB=4.57 GT:AD:DP:GQ:PL 0/0:35,1:36:6:0,6,84 1/1:32,3:35:9:70,9,0 0/1:44,1:45:12:12,0,74 0/0:28,0:28:9:0,9,83 +chr7 6761742 . G C 41.34 . AC=3;AF=0.750;AN=4;BaseQRankSum=2.793;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.4235;MLEAC=3;MLEAF=0.750;MQ=14.02;MQ0=0;MQRankSum=0.244;QD=2.07;ReadPosRankSum=0.135;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,2:10:3:29,3,0 ./. ./. 0/1:6,3:10:17:47,0,17 +chr7 6966577 . T G 51.35 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.661;DP=52;Dels=0.00;FS=2.516;HaplotypeScore=3.0261;MLEAC=5;MLEAF=0.625;MQ=11.60;MQ0=0;MQRankSum=3.114;QD=0.99;ReadPosRankSum=0.415;SB=1.71 GT:AD:DP:GQ:PL 1/1:16,2:18:3:29,3,0 0/1:11,1:12:15:15,0,35 0/1:9,1:10:22:22,0,33 1/1:11,1:12:3:27,3,0 +chr7 7415129 . C T 69.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.206;DP=129;Dels=0.02;FS=2.456;HaplotypeScore=5.1655;MLEAC=4;MLEAF=0.500;MQ=24.61;MQ0=0;MQRankSum=-2.965;QD=0.89;ReadPosRankSum=2.372;SB=0.696 GT:AD:DP:GQ:PL 0/0:43,7:51:2:0,2,519 0/1:25,4:29:18:18,0,298 0/1:31,9:40:61:61,0,250 1/1:6,1:7:3:32,3,0 +chr7 7645806 rs2286209 A G 2198.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.409;DB;DP=123;Dels=0.00;FS=3.729;HaplotypeScore=2.4529;MLEAC=5;MLEAF=0.625;MQ=35.23;MQ0=0;MQRankSum=-1.947;QD=17.87;ReadPosRankSum=-0.335;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,14:38:99:382,0,688 1/1:3,39:42:99:1448,117,0 0/1:22,12:34:99:335,0,618 0/1:6,3:9:79:79,0,88 +chr7 8183347 rs11767851 C T 164.37 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.000;DB;DP=8;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=30.11;MQ0=0;MQRankSum=0.000;QD=20.55;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,4:4:12:146,12,0 1/1:0,1:1:3:32,3,0 0/1:2,1:3:26:26,0,35 ./. +chr7 8196897 . C T 33.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.256;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=1.2154;MLEAC=1;MLEAF=0.125;MQ=32.83;MQ0=0;MQRankSum=-1.759;QD=2.83;ReadPosRankSum=2.159;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/0:47,2:49:67:0,67,1184 0/0:49,2:51:57:0,57,1087 0/0:39,1:40:61:0,61,992 0/1:9,3:12:70:70,0,130 +chr7 8791385 . T C 126.76 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.712;DP=163;Dels=0.00;FS=40.695;HaplotypeScore=12.7774;MLEAC=2;MLEAF=0.250;MQ=33.26;MQ0=0;MQRankSum=-2.838;QD=1.76;ReadPosRankSum=0.713;SB=-5.145e-01 GT:AD:DP:GQ:PL 0/0:43,2:45:20:0,20,1076 0/0:43,3:46:12:0,12,1109 0/1:39,8:47:99:100,0,845 0/1:21,4:25:68:68,0,344 +chr7 9766618 . G T 65.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.863;DP=182;Dels=0.00;FS=85.328;HaplotypeScore=5.0922;MLEAC=4;MLEAF=0.500;MQ=14.32;MQ0=0;MQRankSum=3.730;QD=0.36;ReadPosRankSum=-0.933;SB=-4.708e+00 GT:AD:DP:GQ:PL 0/1:41,2:43:1:1,0,198 0/1:48,3:51:41:41,0,132 0/1:45,2:47:21:21,0,213 0/1:37,4:41:43:43,0,175 +chr7 9767845 . G T 65.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.662;DP=60;Dels=0.00;FS=14.191;HaplotypeScore=2.7515;MLEAC=2;MLEAF=0.250;MQ=17.82;MQ0=0;MQRankSum=0.505;QD=2.03;ReadPosRankSum=2.458;SB=-2.612e+00 GT:AD:DP:GQ:PL 0/1:9,5:14:43:43,0,56 0/1:10,8:18:62:62,0,67 0/0:15,1:16:12:0,12,117 0/0:10,2:12:3:0,3,26 +chr7 11509561 rs2285744 G C 594.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.028;DB;DP=265;Dels=0.00;FS=2.344;HaplotypeScore=0.9892;MLEAC=1;MLEAF=0.125;MQ=40.01;MQ0=0;MQRankSum=-2.219;QD=9.02;ReadPosRankSum=2.210;SB=-1.690e+02 GT:AD:DP:GQ:PL 0/1:45,21:66:99:631,0,1571 0/0:73,0:73:99:0,217,2954 0/0:71,0:71:99:0,199,2687 0/0:54,0:54:99:0,162,2177 +chr7 11581121 rs47 T C 3219.64 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.714;DB;DP=223;Dels=0.00;FS=0.000;HaplotypeScore=2.9528;MLEAC=5;MLEAF=0.625;MQ=34.65;MQ0=0;MQRankSum=-5.809;QD=14.44;ReadPosRankSum=0.689;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:4,40:45:56:1328,56,0 0/1:40,22:62:99:598,0,1050 0/1:40,26:66:99:813,0,711 0/1:29,20:49:99:526,0,522 +chr7 11676011 . A T 59.74 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.486;DP=83;Dels=0.05;FS=34.661;HaplotypeScore=21.9687;MLEAC=3;MLEAF=0.375;MQ=23.36;MQ0=0;MQRankSum=-3.697;QD=0.95;ReadPosRankSum=1.918;SB=1.16 GT:AD:DP:GQ:PL 0/1:11,7:18:67:67,0,105 0/1:17,5:22:22:22,0,246 0/0:14,4:18:9:0,9,101 0/1:18,2:21:13:13,0,124 +chr7 12271452 rs3800842 A G 979.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.882;DB;DP=103;Dels=0.00;FS=1.502;HaplotypeScore=0.7475;MLEAC=4;MLEAF=0.500;MQ=35.94;MQ0=0;MQRankSum=-2.721;QD=9.51;ReadPosRankSum=0.697;SB=-6.808e+01 GT:AD:DP:GQ:PL 0/1:24,9:33:99:248,0,701 0/1:16,14:30:99:432,0,460 0/1:26,6:32:99:147,0,828 0/1:2,6:8:12:195,0,12 +chr7 12620624 . G C 360.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.030;DP=67;Dels=0.01;FS=13.720;HaplotypeScore=0.7101;MLEAC=4;MLEAF=0.500;MQ=28.19;MQ0=0;MQRankSum=0.917;QD=5.38;ReadPosRankSum=3.755;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:13:27:57,0,27 0/1:15,5:20:99:117,0,163 0/1:14,7:21:99:172,0,251 0/1:8,3:12:57:57,0,120 +chr7 12620940 . C G 135.12 . AC=5;AF=0.833;AN=6;BaseQRankSum=-0.566;DP=23;Dels=0.04;FS=11.139;HaplotypeScore=4.1383;MLEAC=5;MLEAF=0.833;MQ=21.07;MQ0=0;MQRankSum=1.931;QD=7.11;ReadPosRankSum=1.931;SB=2.27 GT:AD:DP:GQ:PL 0/1:2,3:5:10:63,0,10 1/1:2,3:5:6:58,6,0 1/1:7,2:9:6:53,6,0 ./. +chr7 14025640 rs3801110 G A 365.77 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.401;DB;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=1.4777;MLEAC=4;MLEAF=0.667;MQ=34.76;MQ0=0;MQRankSum=-2.387;QD=13.06;ReadPosRankSum=1.297;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,4:9:99:99,0,110 1/1:0,6:6:12:150,12,0 0/1:7,5:12:99:158,0,249 ./. +chr7 14027679 . A C 138.58 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.095;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.8010;MLEAC=3;MLEAF=0.375;MQ=31.64;MQ0=0;MQRankSum=-1.826;QD=1.43;ReadPosRankSum=-0.141;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,4:29:99:101,0,277 0/0:48,2:51:7:0,7,716 0/1:41,5:46:71:71,0,523 0/1:20,1:22:8:8,0,288 +chr7 14027867 rs10658043 G GCA 178.62 . AC=6;AF=1.00;AN=6;DB;DP=84;FS=0.000;HaplotypeScore=2.7247;MLEAC=6;MLEAF=1.00;MQ=15.50;MQ0=0;QD=2.59;RPA=8,9;RU=CA;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:19,6:8:6:86,6,0 1/1:12,11:8:6:68,6,0 ./. 1/1:14,5:4:6:70,6,0 +chr7 15458308 . T A 206.58 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.928;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.2433;MLEAC=3;MLEAF=0.375;MQ=27.80;MQ0=0;MQRankSum=1.775;QD=2.37;ReadPosRankSum=-1.573;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,9:27:99:189,0,179 0/1:26,4:30:49:49,0,484 0/1:27,2:30:11:11,0,314 0/0:12,0:12:12:0,12,91 +chr7 15599828 . T G 163.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.419;DP=182;Dels=0.01;FS=36.088;HaplotypeScore=7.0288;MLEAC=2;MLEAF=0.250;MQ=33.24;MQ0=0;MQRankSum=-0.059;QD=2.02;ReadPosRankSum=0.954;SB=-1.042e+00 GT:AD:DP:GQ:PL 0/0:41,1:42:49:0,49,664 0/1:40,7:47:99:140,0,622 0/0:55,2:58:55:0,55,1153 0/1:30,3:33:65:65,0,258 +chr7 16598655 rs6979816 G A 296.95 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.379;DB;DP=67;Dels=0.03;FS=6.842;HaplotypeScore=7.2461;MLEAC=4;MLEAF=0.667;MQ=24.82;MQ0=0;MQRankSum=-2.712;QD=4.79;ReadPosRankSum=1.021;SB=-1.195e-02 GT:AD:DP:GQ:PL 0/1:9,7:16:8:110,0,8 0/1:21,4:25:39:39,0,123 1/1:9,10:19:21:189,21,0 ./. +chr7 16605818 rs499608 G A 37.07 . AC=1;AF=0.167;AN=6;BaseQRankSum=-0.537;DB;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.167;MQ=36.49;MQ0=0;MQRankSum=-0.322;QD=9.27;ReadPosRankSum=-1.396;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:70:71,0,70 0/0:8,0:8:18:0,18,251 0/0:1,0:1:3:0,3,41 ./. +chr7 16889960 rs1525737 G A 267.32 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.933;DB;DP=17;Dels=0.00;FS=15.611;HaplotypeScore=0.1663;MLEAC=8;MLEAF=1.00;MQ=22.50;MQ0=0;MQRankSum=2.933;QD=15.72;ReadPosRankSum=0.933;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:9:108,9,0 1/1:2,2:4:6:58,6,0 1/1:3,3:6:9:104,9,0 1/1:2,1:3:3:35,3,0 +chr7 18688075 . AT A 110.37 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.602;DP=78;FS=0.000;HaplotypeScore=16.3521;MLEAC=3;MLEAF=0.375;MQ=19.54;MQ0=0;MQRankSum=1.540;QD=1.87;RPA=10,9;RU=T;ReadPosRankSum=0.655;SB=0.284;STR GT:AD:DP:GQ:PL 0/0:19,0:10:12:0,12,220 0/1:16,6:13:99:115,0,192 0/1:15,5:9:34:34,0,178 0/1:15,2:6:13:13,0,129 +chr7 18993870 rs2389998 C T 2712.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.137;DB;DP=115;Dels=0.03;FS=5.671;HaplotypeScore=1.2183;MLEAC=7;MLEAF=0.875;MQ=31.71;MQ0=0;MQRankSum=-3.168;QD=23.59;ReadPosRankSum=1.892;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:1,25:26:45:857,45,0 0/1:24,15:39:99:430,0,695 1/1:2,34:36:99:1137,99,0 1/1:0,10:11:30:333,30,0 +chr7 19156582 . G C 120.68 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.442;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.6348;MLEAC=5;MLEAF=0.625;MQ=25.25;MQ0=0;MQRankSum=1.009;QD=2.41;ReadPosRankSum=-1.611;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,3:11:9:91,9,0 0/1:9,2:11:42:42,0,127 0/1:11,2:14:14:14,0,60 0/1:12,2:14:18:18,0,104 +chr7 19748280 . G A 829.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.269;DP=74;Dels=0.00;FS=3.941;HaplotypeScore=7.4858;MLEAC=4;MLEAF=0.500;MQ=27.89;MQ0=0;MQRankSum=2.415;QD=11.21;ReadPosRankSum=2.237;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,10:19:70:272,0,70 0/1:11,6:17:91:157,0,91 0/1:13,11:24:99:286,0,104 0/1:7,7:14:45:157,0,45 +chr7 20199377 . C G 177.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.340;DP=142;Dels=0.00;FS=51.475;HaplotypeScore=1.2365;MLEAC=3;MLEAF=0.375;MQ=36.06;MQ0=0;MQRankSum=-2.875;QD=1.55;ReadPosRankSum=3.110;SB=-1.258e+00 GT:AD:DP:GQ:PL 0/1:36,6:42:70:70,0,1037 0/1:33,5:38:61:61,0,843 0/1:29,6:35:88:88,0,766 0/0:25,2:27:3:0,3,726 +chr7 20621856 . T G 335.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.072;DP=143;Dels=0.01;FS=59.731;HaplotypeScore=11.6074;MLEAC=4;MLEAF=0.500;MQ=30.62;MQ0=0;MQRankSum=0.580;QD=2.35;ReadPosRankSum=2.244;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/1:37,6:44:87:87,0,515 0/1:29,5:34:99:105,0,342 0/1:37,6:43:99:109,0,497 0/1:17,3:21:77:77,0,161 +chr7 20721148 . A C 94.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.425;DP=119;Dels=0.00;FS=15.474;HaplotypeScore=1.6290;MLEAC=4;MLEAF=0.500;MQ=37.87;MQ0=0;MQRankSum=-3.269;QD=0.79;ReadPosRankSum=0.196;SB=-2.147e+00 GT:AD:DP:GQ:PL 0/1:28,2:30:5:5,0,527 0/1:25,3:28:52:52,0,363 0/1:37,2:39:4:4,0,687 0/1:17,4:22:73:73,0,354 +chr7 20826452 rs34863300 T G 3740.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.555;DB;DP=191;Dels=0.00;FS=12.408;HaplotypeScore=1.6629;MLEAC=5;MLEAF=0.625;MQ=35.25;MQ0=0;MQRankSum=-4.144;QD=19.58;ReadPosRankSum=2.654;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,44:49:99:1546,126,0 0/1:38,23:61:99:697,0,1211 0/1:23,29:52:99:960,0,578 0/1:12,17:29:99:537,0,321 +chr7 21611399 rs66476925 G C 921.34 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.586;DB;DP=105;Dels=0.03;FS=11.627;HaplotypeScore=22.0811;MLEAC=5;MLEAF=0.625;MQ=25.89;MQ0=0;MQRankSum=3.274;QD=8.77;ReadPosRankSum=-0.093;SB=0.229 GT:AD:DP:GQ:PL 0/1:19,10:29:30:216,0,30 0/1:19,13:32:99:409,0,104 0/1:22,10:32:35:270,0,35 1/1:6,3:9:6:70,6,0 +chr7 21628685 rs6967971 C G 92.67 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.380;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.4893;MLEAC=6;MLEAF=1.00;MQ=20.41;MQ0=0;MQRankSum=1.380;QD=13.24;ReadPosRankSum=-1.380;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:36,3,0 1/1:2,2:4:6:61,6,0 1/1:1,1:2:3:31,3,0 ./. +chr7 21631165 . A G 79.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.871;DP=285;Dels=0.02;FS=66.972;HaplotypeScore=7.5837;MLEAC=1;MLEAF=0.125;MQ=37.33;MQ0=0;MQRankSum=-4.220;QD=1.74;ReadPosRankSum=-1.690;SB=-3.698e+00 GT:AD:DP:GQ:PL 0/0:74,2:76:99:0,140,2400 0/0:78,1:79:99:0,185,2657 0/0:77,2:80:99:0,167,2593 0/1:38,7:45:99:116,0,905 +chr7 21657130 rs12539987 C G 1189.71 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.898;DB;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.2496;MLEAC=5;MLEAF=0.625;MQ=33.11;MQ0=0;MQRankSum=-1.411;QD=15.65;ReadPosRankSum=1.672;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,19:21:57:681,57,0 0/1:15,11:26:99:278,0,439 0/1:16,8:24:99:221,0,409 0/1:3,2:5:14:55,0,14 +chr7 21778580 . T TG 251.36 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.061;DP=39;FS=0.000;HaplotypeScore=17.6136;MLEAC=5;MLEAF=0.625;MQ=19.46;MQ0=0;MQRankSum=-1.531;QD=6.45;RPA=2,3;RU=G;ReadPosRankSum=0.429;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:7,2:4:28:28,0,109 0/1:10,3:4:18:81,0,18 0/1:5,3:6:25:136,0,25 1/1:6,1:2:6:59,6,0 +chr7 21892122 . A G 134.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.144;DP=190;Dels=0.01;FS=58.736;HaplotypeScore=14.7295;MLEAC=2;MLEAF=0.250;MQ=30.77;MQ0=0;MQRankSum=-3.974;QD=1.56;ReadPosRankSum=-2.000;SB=-1.010e+00 GT:AD:DP:GQ:PL 0/1:46,8:54:46:46,0,983 0/0:48,2:50:39:0,39,1004 0/0:50,3:53:74:0,74,1298 0/1:22,8:31:99:130,0,442 +chr7 21951105 rs11978167 T G 145.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.025;DB;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.4333;MLEAC=3;MLEAF=0.375;MQ=35.94;MQ0=0;MQRankSum=-0.135;QD=5.58;ReadPosRankSum=0.540;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:39:0,39,520 0/1:6,2:8:59:59,0,179 0/1:10,4:14:99:116,0,326 0/1:3,1:4:13:13,0,106 +chr7 22197361 . G A 34.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.389;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.2379;MLEAC=3;MLEAF=0.375;MQ=27.14;MQ0=0;MQRankSum=-3.060;QD=1.40;ReadPosRankSum=3.814;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:45:45,0,166 0/0:8,2:10:4:0,4,246 0/1:4,1:5:19:19,0,71 0/1:7,2:9:12:12,0,122 +chr7 22347861 rs10499552 G A 346.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.095;DB;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=1.2327;MLEAC=1;MLEAF=0.125;MQ=36.66;MQ0=0;MQRankSum=-0.184;QD=10.51;ReadPosRankSum=0.035;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,12:32:99:383,0,593 0/0:35,0:35:99:0,99,1306 0/0:28,0:28:75:0,75,918 0/0:12,0:12:33:0,33,434 +chr7 23207542 . G T 105.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.846;DP=200;Dels=0.01;FS=75.089;HaplotypeScore=7.3791;MLEAC=3;MLEAF=0.375;MQ=33.97;MQ0=0;MQRankSum=-0.917;QD=0.78;ReadPosRankSum=2.029;SB=0.770 GT:AD:DP:GQ:PL 0/1:48,6:54:58:58,0,1134 0/1:40,5:46:55:55,0,822 0/0:61,3:65:28:0,28,1339 0/1:27,3:34:36:36,0,407 +chr7 23293746 rs199347 A G 498.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.896;DB;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=5.1398;MLEAC=1;MLEAF=0.125;MQ=36.13;MQ0=0;MQRankSum=3.107;QD=10.62;ReadPosRankSum=-0.212;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,159,1999 0/1:31,16:47:99:535,0,757 0/0:78,0:78:99:0,226,2732 0/0:44,0:44:99:0,102,1234 +chr7 23749867 . C T 103.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.222;DP=85;Dels=0.05;FS=4.763;HaplotypeScore=13.2561;MLEAC=4;MLEAF=0.500;MQ=24.82;MQ0=0;MQRankSum=-0.828;QD=1.22;ReadPosRankSum=1.893;SB=-1.682e-02 GT:AD:DP:GQ:PL 0/1:21,5:26:36:36,0,390 0/1:17,3:21:25:25,0,310 0/1:12,4:16:59:59,0,164 0/1:15,3:18:26:26,0,221 +chr7 23775252 . G A 470.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.164;DP=191;Dels=0.00;FS=137.979;HaplotypeScore=3.2821;MLEAC=3;MLEAF=0.375;MQ=39.36;MQ0=0;MQRankSum=-5.993;QD=2.87;ReadPosRankSum=2.626;SB=0.835 GT:AD:DP:GQ:PL 0/1:44,12:56:99:254,0,1477 0/1:44,10:54:99:176,0,1547 0/1:46,8:54:84:84,0,1484 0/0:24,3:27:25:0,25,741 +chr7 23776500 . A C 229.73 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.027;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.2062;MLEAC=5;MLEAF=0.625;MQ=31.80;MQ0=0;MQRankSum=-1.426;QD=2.73;ReadPosRankSum=-0.881;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,7:26:99:160,0,305 0/1:23,3:26:62:62,0,275 0/1:23,3:26:13:13,0,335 1/1:5,1:6:3:37,3,0 +chr7 23810845 rs1469001 G A 1768.13 . AC=8;AF=1.00;AN=8;DB;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.2479;MLEAC=8;MLEAF=1.00;MQ=28.41;MQ0=0;QD=29.97;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:51:578,51,0 1/1:1,15:16:42:436,42,0 1/1:0,22:22:63:694,63,0 1/1:0,3:3:9:99,9,0 +chr7 23823172 . C T 47.33 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.941;DP=83;Dels=0.02;FS=0.000;HaplotypeScore=15.6773;MLEAC=3;MLEAF=0.500;MQ=22.01;MQ0=0;MQRankSum=0.076;QD=0.64;ReadPosRankSum=0.839;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,4:29:43:43,0,112 0/1:25,1:26:24:24,0,63 0/1:15,3:18:19:19,0,66 ./. +chr7 23917480 rs10950975 G A 151.11 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=9;Dels=0.00;FS=7.782;HaplotypeScore=0.6651;MLEAC=4;MLEAF=1.00;MQ=25.36;MQ0=0;MQRankSum=0.736;QD=18.89;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:79,6,0 1/1:1,3:4:9:107,9,0 ./. ./. +chr7 24689469 . C G 119.21 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.519;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=5.2021;MLEAC=4;MLEAF=0.500;MQ=29.61;MQ0=0;MQRankSum=-3.525;QD=1.37;ReadPosRankSum=1.375;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,7:24:86:86,0,449 0/1:25,7:32:53:53,0,512 0/1:20,2:23:9:9,0,421 0/1:5,2:7:13:13,0,193 +chr7 24703208 . G C 44.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.625;DP=67;Dels=0.00;FS=13.328;HaplotypeScore=2.8239;MLEAC=2;MLEAF=0.250;MQ=30.94;MQ0=0;MQRankSum=-1.233;QD=2.32;ReadPosRankSum=-1.065;SB=0.416 GT:AD:DP:GQ:PL 0/0:23,1:25:15:0,15,570 0/1:10,2:12:16:16,0,261 0/0:20,3:23:13:0,13,502 0/1:4,3:7:38:69,0,38 +chr7 24784403 rs2521768 C T 186.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.612;DB;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.4946;MLEAC=1;MLEAF=0.125;MQ=42.63;MQ0=0;MQRankSum=-0.804;QD=7.79;ReadPosRankSum=-0.035;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:39:0,39,549 0/1:17,7:24:99:223,0,573 0/0:23,0:23:66:0,66,899 0/0:18,0:18:54:0,54,744 +chr7 24882068 . A G 247.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.426;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0858;MLEAC=3;MLEAF=0.375;MQ=24.50;MQ0=0;MQRankSum=-0.729;QD=2.45;ReadPosRankSum=2.947;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,7:34:32:107,0,32 0/1:28,3:32:37:37,0,121 0/1:28,7:35:58:145,0,58 0/0:9,0:10:3:0,3,23 +chr7 25729528 rs111683990 C G 293.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.131;DB;DP=231;Dels=0.00;FS=7.144;HaplotypeScore=3.4769;MLEAC=3;MLEAF=0.375;MQ=14.69;MQ0=0;MQRankSum=-2.476;QD=1.75;ReadPosRankSum=0.820;SB=-1.194e+02 GT:AD:DP:GQ:PL 0/0:63,0:63:33:0,33,338 0/1:26,25:51:31:166,0,31 0/1:44,15:59:36:36,0,236 0/1:28,29:58:99:135,0,187 +chr7 26724279 rs212850 T G 212.30 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.678;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=35.79;MQ0=0;MQRankSum=0.597;QD=19.30;ReadPosRankSum=1.034;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:18:74,0,18 0/1:1,1:2:35:35,0,35 0/1:1,4:5:29:142,0,29 ./. +chr7 27566053 rs12700813 G C 1585.03 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.868;DB;DP=60;Dels=0.00;FS=8.451;HaplotypeScore=0.5834;MLEAC=6;MLEAF=0.750;MQ=31.13;MQ0=0;MQRankSum=0.269;QD=26.42;ReadPosRankSum=2.306;SB=2.04 GT:AD:DP:GQ:PL 1/1:1,17:18:51:588,51,0 0/1:6,6:13:99:195,0,131 1/1:0,16:16:45:552,45,0 0/1:3,9:12:14:296,0,14 +chr7 27835722 . T G 84.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.609;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=7.5401;MLEAC=2;MLEAF=0.250;MQ=30.65;MQ0=0;MQRankSum=-2.366;QD=0.89;ReadPosRankSum=0.517;SB=6.98 GT:AD:DP:GQ:PL 0/1:34,5:39:75:75,0,561 0/0:27,1:29:23:0,23,533 0/1:36,4:40:45:45,0,431 0/1:12,1:14:6:6,0,153 +chr7 28111396 . C G 96.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.386;DP=62;Dels=0.00;FS=2.691;HaplotypeScore=2.3450;MLEAC=4;MLEAF=0.500;MQ=27.56;MQ0=0;MQRankSum=-2.599;QD=1.56;ReadPosRankSum=3.350;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,2:19:15:15,0,80 0/1:9,4:13:58:58,0,151 0/1:9,3:12:34:34,0,58 0/1:14,4:18:32:32,0,123 +chr7 28758375 . T G 73.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.917;DP=174;Dels=0.00;FS=18.554;HaplotypeScore=14.2419;MLEAC=3;MLEAF=0.375;MQ=31.29;MQ0=0;MQRankSum=-1.917;QD=0.60;ReadPosRankSum=1.541;SB=15.40 GT:AD:DP:GQ:PL 0/1:36,4:41:59:59,0,416 0/1:39,3:44:5:5,0,621 0/0:46,1:51:45:0,45,727 0/1:34,3:38:51:51,0,211 +chr7 29252724 rs113501072 A T 46.45 . AC=2;AF=0.250;AN=8;BaseQRankSum=3.545;DB;DP=186;Dels=0.00;FS=11.523;HaplotypeScore=1.1782;MLEAC=2;MLEAF=0.250;MQ=11.07;MQ0=0;MQRankSum=-2.936;QD=0.57;ReadPosRankSum=3.032;SB=2.87 GT:AD:DP:GQ:PL 0/0:57,0:57:12:0,12,107 0/1:42,14:56:37:52,0,37 0/0:36,12:48:6:0,6,86 0/1:19,6:25:16:35,0,16 +chr7 29252850 . T A 193.41 . AC=7;AF=0.875;AN=8;BaseQRankSum=-4.204;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=10.4701;MLEAC=7;MLEAF=0.875;MQ=13.94;MQ0=0;MQRankSum=3.946;QD=2.13;ReadPosRankSum=1.525;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,4:21:30:62,0,30 1/1:25,3:29:6:47,6,0 1/1:21,5:28:9:79,9,0 1/1:9,3:12:6:48,6,0 +chr7 29519671 . C T 152.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.553;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0736;MLEAC=2;MLEAF=0.250;MQ=30.17;MQ0=0;MQRankSum=0.414;QD=4.01;ReadPosRankSum=-0.186;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,0:22:30:0,30,332 0/1:15,4:19:81:81,0,125 0/0:21,0:21:30:0,30,348 0/1:13,5:19:84:113,0,84 +chr7 29591676 rs6462159 A G 122.36 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.758;DB;DP=14;Dels=0.00;FS=2.836;HaplotypeScore=1.7638;MLEAC=6;MLEAF=1.00;MQ=19.79;MQ0=0;MQRankSum=2.616;QD=8.74;ReadPosRankSum=-0.354;SB=-3.869e+01 GT:AD:DP:GQ:PL ./. 1/1:3,6:9:9:114,9,0 1/1:0,3:3:3:22,3,0 1/1:1,1:2:3:22,3,0 +chr7 30087381 rs10488085 A G 251.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.976;DB;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9015;MLEAC=3;MLEAF=0.375;MQ=35.65;MQ0=0;MQRankSum=0.875;QD=9.33;ReadPosRankSum=0.097;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:30:0,30,398 0/1:8,3:11:92:92,0,215 0/1:6,5:11:99:173,0,158 0/1:4,1:5:30:30,0,75 +chr7 30174875 . C G 119.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.843;DP=52;Dels=0.00;FS=2.455;HaplotypeScore=4.0741;MLEAC=4;MLEAF=0.500;MQ=28.65;MQ0=0;MQRankSum=-1.276;QD=2.30;ReadPosRankSum=-0.362;SB=-1.901e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:42:42,0,125 0/1:11,2:13:27:27,0,298 0/1:11,2:13:24:24,0,255 0/1:12,3:15:69:69,0,154 +chr7 30485924 . T A 42.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.249;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.6436;MLEAC=3;MLEAF=0.375;MQ=30.54;MQ0=0;MQRankSum=-0.919;QD=1.04;ReadPosRankSum=-0.495;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:25:25,0,357 0/1:11,1:12:12:12,0,133 0/1:11,2:13:48:48,0,152 0/0:11,0:11:9:0,9,119 +chr7 30614508 rs38487 A G 1319.55 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.328;DB;DP=55;Dels=0.00;FS=8.373;HaplotypeScore=1.4780;MLEAC=7;MLEAF=0.875;MQ=30.43;MQ0=0;MQRankSum=1.086;QD=23.99;ReadPosRankSum=1.182;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:27:291,27,0 0/1:7,9:16:99:245,0,124 1/1:0,16:16:36:411,36,0 1/1:1,11:12:33:417,33,0 +chr7 30695289 . G A 87.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.572;DP=164;Dels=0.01;FS=75.633;HaplotypeScore=3.6453;MLEAC=3;MLEAF=0.375;MQ=18.01;MQ0=0;MQRankSum=0.976;QD=0.70;ReadPosRankSum=0.597;SB=4.25 GT:AD:DP:GQ:PL 0/1:32,4:36:45:45,0,68 0/0:38,1:39:12:0,12,131 0/1:45,2:47:35:35,0,156 0/1:36,5:41:50:50,0,180 +chr7 30951586 . C A 103.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.148;DP=89;Dels=0.00;FS=30.983;HaplotypeScore=9.3871;MLEAC=3;MLEAF=0.375;MQ=28.84;MQ0=0;MQRankSum=-0.576;QD=1.56;ReadPosRankSum=-1.934;SB=0.551 GT:AD:DP:GQ:PL 0/0:22,1:23:12:0,12,479 0/1:15,3:19:59:59,0,321 0/1:19,2:21:24:24,0,273 0/1:21,5:26:63:63,0,389 +chr7 31139776 rs138481612 G T 45.06 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.658;DB;DP=93;Dels=0.02;FS=25.939;HaplotypeScore=11.4337;MLEAC=2;MLEAF=0.250;MQ=31.04;MQ0=0;MQRankSum=-0.139;QD=1.07;ReadPosRankSum=0.037;SB=-7.247e-01 GT:AD:DP:GQ:PL 0/0:19,1:20:20:0,20,467 0/1:20,4:24:61:61,0,402 0/0:28,2:30:8:0,8,736 0/1:15,2:17:25:25,0,236 +chr7 31862745 . A T 41.99 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.174;DP=167;Dels=0.02;FS=55.153;HaplotypeScore=29.8856;MLEAC=2;MLEAF=0.250;MQ=31.18;MQ0=0;MQRankSum=-0.666;QD=0.51;ReadPosRankSum=2.401;SB=-5.768e+00 GT:AD:DP:GQ:PL 0/1:39,4:45:76:76,0,614 0/0:35,2:39:17:0,17,483 0/0:44,0:45:69:0,69,801 0/1:32,2:35:3:3,0,478 +chr7 31918879 rs1860786 C T 628.36 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.400;DB;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.2333;MLEAC=8;MLEAF=1.00;MQ=29.29;MQ0=0;MQRankSum=2.227;QD=26.18;ReadPosRankSum=2.113;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,7:8:21:251,21,0 1/1:0,6:6:18:212,18,0 1/1:2,5:7:15:154,15,0 1/1:1,2:3:6:50,6,0 +chr7 32109993 . T C 83.57 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.678;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=1.7224;MLEAC=3;MLEAF=0.375;MQ=32.57;MQ0=0;MQRankSum=0.857;QD=0.58;ReadPosRankSum=3.055;SB=-5.177e-01 GT:AD:DP:GQ:PL 0/1:34,3:39:11:11,0,764 0/1:50,5:55:14:14,0,1250 0/0:45,1:46:79:0,79,1134 0/1:43,7:50:99:101,0,883 +chr7 32609565 rs2305320 A G 546.46 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.283;DB;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.9289;MLEAC=6;MLEAF=0.750;MQ=27.50;MQ0=0;MQRankSum=-1.189;QD=15.61;ReadPosRankSum=1.793;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,5:6:20:121,0,20 0/1:8,7:15:70:70,0,208 1/1:0,9:9:27:299,27,0 1/1:0,5:5:9:102,9,0 +chr7 32801155 . C T 32.31 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.491;DP=95;Dels=0.04;FS=5.258;HaplotypeScore=20.0896;MLEAC=1;MLEAF=0.125;MQ=17.89;MQ0=0;MQRankSum=1.186;QD=1.08;ReadPosRankSum=1.840;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:6:0,6,62 0/0:16,0:16:3:0,3,23 0/1:25,4:30:61:67,0,61 0/0:26,1:27:6:0,6,57 +chr7 33303940 . G C 444.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.981;DP=268;Dels=0.01;FS=32.101;HaplotypeScore=10.5935;MLEAC=4;MLEAF=0.500;MQ=34.38;MQ0=0;MQRankSum=-3.978;QD=1.66;ReadPosRankSum=-2.527;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:53,7:60:90:90,0,1413 0/1:81,10:91:89:89,0,2089 0/1:79,13:93:99:211,0,1638 0/1:18,4:22:97:97,0,289 +chr7 34118751 . T G 75.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.085;DP=153;Dels=0.00;FS=11.526;HaplotypeScore=9.4991;MLEAC=2;MLEAF=0.250;MQ=31.33;MQ0=0;MQRankSum=-0.568;QD=1.05;ReadPosRankSum=1.332;SB=0.013 GT:AD:DP:GQ:PL 0/0:37,0:38:60:0,60,677 0/1:32,4:36:41:41,0,490 0/0:43,0:43:72:0,72,917 0/1:32,4:36:76:76,0,488 +chr7 34867256 . G A 121.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.852;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=6.3821;MLEAC=3;MLEAF=0.375;MQ=18.51;MQ0=0;MQRankSum=2.827;QD=2.57;ReadPosRankSum=-1.907;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:97:109,0,97 0/1:19,2:21:35:35,0,139 0/1:13,1:14:19:19,0,90 0/0:8,1:9:6:0,6,55 +chr7 34979905 rs1637696 C A 233.52 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.141;DB;DP=60;Dels=0.00;FS=2.388;HaplotypeScore=0.7750;MLEAC=5;MLEAF=0.625;MQ=15.83;MQ0=0;MQRankSum=1.065;QD=5.99;ReadPosRankSum=3.062;SB=-2.592e+01 GT:AD:DP:GQ:PL 0/1:12,7:19:51:52,0,51 0/0:17,4:21:3:0,3,36 1/1:4,14:19:15:189,15,0 1/1:0,1:1:3:37,3,0 +chr7 34995075 rs1637670 A G 189.70 . AC=6;AF=1.00;AN=6;BaseQRankSum=-1.600;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=19.53;MQ0=0;MQRankSum=2.800;QD=11.16;ReadPosRankSum=1.200;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:47,6,0 1/1:5,1:6:3:39,3,0 1/1:0,6:7:12:140,12,0 ./. +chr7 36124040 . G A 103.50 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.485;DP=49;Dels=0.04;FS=5.798;HaplotypeScore=1.3733;MLEAC=3;MLEAF=0.500;MQ=24.93;MQ0=0;MQRankSum=-0.970;QD=2.35;ReadPosRankSum=-0.970;SB=24.82 GT:AD:DP:GQ:PL ./. 0/1:13,2:15:18:18,0,137 0/1:11,3:14:77:77,0,80 0/1:9,4:13:47:47,0,69 +chr7 36338589 rs11773889 C T 420.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.368;DB;DP=155;Dels=0.00;FS=13.601;HaplotypeScore=1.9770;MLEAC=2;MLEAF=0.250;MQ=28.21;MQ0=0;MQRankSum=-2.744;QD=6.78;ReadPosRankSum=-0.137;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:13,16:29:99:270,0,294 0/1:22,11:33:99:192,0,514 0/0:46,0:46:99:0,117,1371 0/0:46,0:47:99:0,117,1271 +chr7 36438916 . T C 192.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.191;DP=120;Dels=0.00;FS=71.558;HaplotypeScore=1.9315;MLEAC=3;MLEAF=0.375;MQ=37.72;MQ0=0;MQRankSum=-0.167;QD=2.38;ReadPosRankSum=2.136;SB=0.809 GT:AD:DP:GQ:PL 0/1:19,4:23:79:79,0,480 0/1:23,7:30:99:131,0,632 0/0:37,2:39:44:0,44,1078 0/1:25,3:28:26:26,0,748 +chr7 36763560 rs6462703 C T 1096.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.055;DB;DP=73;Dels=0.00;FS=6.349;HaplotypeScore=0.6834;MLEAC=4;MLEAF=0.500;MQ=33.36;MQ0=0;MQRankSum=-1.730;QD=18.59;ReadPosRankSum=0.491;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,15:19:42:529,42,0 0/0:14,0:14:39:0,39,499 0/1:13,11:24:99:341,0,290 0/1:7,9:16:99:275,0,162 +chr7 37264565 . G C 33.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.905;DP=158;Dels=0.02;FS=53.892;HaplotypeScore=13.9569;MLEAC=3;MLEAF=0.375;MQ=31.19;MQ0=0;MQRankSum=-3.538;QD=0.29;ReadPosRankSum=2.572;SB=-1.636e+00 GT:AD:DP:GQ:PL 0/0:39,4:43:6:0,6,928 0/1:34,4:38:31:31,0,647 0/1:37,6:43:37:37,0,916 0/1:27,4:31:6:6,0,587 +chr7 37989775 rs1450851 T C 470.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.349;DB;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.6917;MLEAC=2;MLEAF=0.250;MQ=32.25;MQ0=0;MQRankSum=-1.061;QD=14.71;ReadPosRankSum=0.585;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,6:12:99:177,0,128 0/1:10,10:20:99:335,0,189 0/0:19,0:19:45:0,45,579 0/0:5,0:5:12:0,12,139 +chr7 38284854 rs73360756 C T 32.04 . AC=2;AF=0.333;AN=6;BaseQRankSum=2.227;DB;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.1853;MLEAC=1;MLEAF=0.167;MQ=11.10;MQ0=0;MQRankSum=-3.799;QD=0.92;ReadPosRankSum=0.826;SB=-2.404e+01 GT:AD:DP:GQ:PL 1/1:27,8:35:6:71,6,0 ./. 0/0:34,4:38:18:0,18,192 0/0:17,1:18:9:0,9,82 +chr7 38433791 . A G 677.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.488;DP=106;Dels=0.02;FS=47.295;HaplotypeScore=11.5424;MLEAC=4;MLEAF=0.500;MQ=28.06;MQ0=0;MQRankSum=-0.569;QD=6.39;ReadPosRankSum=-0.162;SB=-1.179e-02 GT:AD:DP:GQ:PL 0/1:18,9:27:99:239,0,209 0/1:20,5:25:92:92,0,258 0/1:15,7:22:99:169,0,163 0/1:21,9:30:99:220,0,253 +chr7 38530568 rs2043786 G T 459.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.615;DB;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=0.2416;MLEAC=1;MLEAF=0.125;MQ=42.46;MQ0=0;MQRankSum=-5.684;QD=10.22;ReadPosRankSum=2.270;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,16:44:99:496,0,865 0/0:52,0:52:99:0,141,1965 0/0:41,0:41:99:0,114,1622 0/0:12,0:12:36:0,36,502 +chr7 38766508 . C A 604.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.337;DP=114;Dels=0.01;FS=50.517;HaplotypeScore=0.7411;MLEAC=4;MLEAF=0.500;MQ=36.87;MQ0=0;MQRankSum=0.734;QD=5.30;ReadPosRankSum=2.782;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,8:30:99:197,0,384 0/1:24,3:27:68:68,0,432 0/1:28,9:37:99:208,0,531 0/1:13,6:19:99:174,0,273 +chr7 40234766 . C T 679.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.321;DP=200;Dels=0.01;FS=0.000;HaplotypeScore=3.1065;MLEAC=4;MLEAF=0.500;MQ=26.40;MQ0=0;MQRankSum=-0.074;QD=3.40;ReadPosRankSum=-0.749;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:49,15:64:99:217,0,573 0/1:45,14:59:99:206,0,618 0/1:43,11:54:99:205,0,624 0/1:15,7:22:94:94,0,181 +chr7 42064799 rs78554970 G T 614.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.649;DB;DP=78;Dels=0.00;FS=2.621;HaplotypeScore=1.1890;MLEAC=3;MLEAF=0.375;MQ=29.41;MQ0=0;MQRankSum=0.449;QD=9.76;ReadPosRankSum=1.183;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:36:0,36,405 0/1:12,8:20:99:227,0,313 0/1:12,12:24:99:343,0,206 0/1:14,5:19:88:88,0,264 +chr7 43916491 rs2232109 G A 37.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.256;DB;DP=22;Dels=0.00;FS=2.788;HaplotypeScore=1.6508;MLEAC=3;MLEAF=0.375;MQ=23.94;MQ0=0;MQRankSum=1.156;QD=3.76;ReadPosRankSum=1.457;SB=0.376 GT:AD:DP:GQ:PL 1/1:2,2:4:6:59,6,0 0/0:6,0:6:15:0,15,160 0/0:6,0:6:3:0,3,42 0/1:5,1:6:22:22,0,108 +chr7 44098865 rs4582459 C T 107.17 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.477;DB;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.6426;MLEAC=1;MLEAF=0.125;MQ=32.56;MQ0=0;MQRankSum=-1.432;QD=11.91;ReadPosRankSum=-0.032;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,6:9:70:143,0,70 0/0:6,0:6:12:0,12,156 0/0:5,0:5:12:0,12,151 0/0:7,0:7:18:0,18,241 +chr7 44099080 . G T 100.15 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.057;DP=59;Dels=0.00;FS=11.907;HaplotypeScore=2.6679;MLEAC=3;MLEAF=0.375;MQ=24.19;MQ0=0;MQRankSum=1.951;QD=2.38;ReadPosRankSum=1.117;SB=1.72 GT:AD:DP:GQ:PL 0/1:9,2:12:46:46,0,105 0/1:14,1:15:22:22,0,71 0/0:16,0:17:12:0,12,126 0/1:12,3:15:75:75,0,75 +chr7 44112862 . T G 242.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.766;DP=124;Dels=0.00;FS=4.521;HaplotypeScore=1.8027;MLEAC=2;MLEAF=0.250;MQ=32.12;MQ0=0;MQRankSum=-2.651;QD=4.49;ReadPosRankSum=0.986;SB=-1.153e-02 GT:AD:DP:GQ:PL 0/1:19,8:27:99:189,0,291 0/0:35,1:36:40:0,40,895 0/0:34,0:34:60:0,60,771 0/1:22,5:27:95:95,0,503 +chr7 44186170 . A T 129.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.744;DP=117;Dels=0.00;FS=75.057;HaplotypeScore=4.5674;MLEAC=3;MLEAF=0.375;MQ=37.36;MQ0=0;MQRankSum=-3.109;QD=1.48;ReadPosRankSum=-1.778;SB=0.735 GT:AD:DP:GQ:PL 0/1:26,4:30:51:51,0,702 0/1:27,3:30:18:18,0,809 0/0:28,1:29:47:0,47,916 0/1:22,6:28:99:104,0,644 +chr7 44187444 . G T 59.90 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.591;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0033;MLEAC=4;MLEAF=0.500;MQ=25.08;MQ0=0;MQRankSum=0.539;QD=0.87;ReadPosRankSum=-0.959;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,1:14:7:7,0,237 0/1:14,1:15:8:8,0,185 0/1:17,2:19:19:19,0,268 0/1:17,3:21:67:67,0,107 +chr7 44189692 rs35723429 C G 180 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.730;DB;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=1.0873;MLEAC=1;MLEAF=0.125;MQ=37.33;MQ0=0;MQRankSum=0.931;QD=13.85;ReadPosRankSum=-0.072;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,6:13:99:216,0,202 0/0:14,0:14:36:0,36,455 0/0:17,0:17:45:0,45,570 0/0:10,0:10:21:0,21,275 +chr7 44574336 . C T 50.11 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.638;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.6290;MLEAC=2;MLEAF=0.333;MQ=25.15;MQ0=0;MQRankSum=0.922;QD=7.16;ReadPosRankSum=0.922;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,2:3:16:56,0,16 0/1:2,2:4:17:31,0,17 ./. 0/0:1,0:1:3:0,3,22 +chr7 44620836 rs8580 C A 449.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.636;DB;DP=210;Dels=0.00;FS=3.821;HaplotypeScore=1.3779;MLEAC=1;MLEAF=0.125;MQ=39.37;MQ0=0;MQRankSum=-0.651;QD=10.23;ReadPosRankSum=0.374;SB=-1.290e+02 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,159,2086 0/1:29,15:44:99:486,0,946 0/0:54,0:54:99:0,153,2029 0/0:55,0:55:99:0,159,2073 +chr7 44746755 . C A 38.48 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.143;DP=46;Dels=0.02;FS=3.183;HaplotypeScore=13.3709;MLEAC=4;MLEAF=0.500;MQ=17.80;MQ0=0;MQRankSum=-0.824;QD=1.28;ReadPosRankSum=1.154;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,6:9:15:39,0,15 0/0:15,0:16:3:0,3,36 1/1:7,2:9:3:25,3,0 0/1:9,2:11:16:16,0,19 +chr7 44797105 . C A 114.35 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.152;DP=43;Dels=0.02;FS=46.948;HaplotypeScore=6.1254;MLEAC=3;MLEAF=0.500;MQ=16.45;MQ0=0;MQRankSum=0.836;QD=3.18;ReadPosRankSum=-0.608;SB=-1.156e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:19:19,0,19 0/1:7,3:11:25:56,0,25 0/1:11,4:15:74:78,0,74 ./. +chr7 44804152 . C T 85.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.591;DP=67;Dels=0.01;FS=4.927;HaplotypeScore=9.0863;MLEAC=3;MLEAF=0.375;MQ=25.87;MQ0=0;MQRankSum=-0.455;QD=1.81;ReadPosRankSum=1.364;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:42:42,0,156 0/0:19,1:20:30:0,30,357 0/1:13,4:17:74:74,0,185 0/1:13,1:14:12:12,0,179 +chr7 44948186 . A T 47.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.592;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9923;MLEAC=3;MLEAF=0.375;MQ=31.68;MQ0=0;MQRankSum=1.092;QD=1.43;ReadPosRankSum=0.967;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:15:15,0,115 0/0:7,0:7:12:0,12,105 0/1:11,2:14:26:26,0,220 0/1:8,2:10:49:49,0,102 +chr7 45141137 . T G 190.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.020;DP=43;Dels=0.00;FS=73.717;HaplotypeScore=5.1019;MLEAC=4;MLEAF=0.500;MQ=23.11;MQ0=0;MQRankSum=3.594;QD=4.43;ReadPosRankSum=1.316;SB=5.16 GT:AD:DP:GQ:PL 0/1:9,2:11:50:65,0,50 0/1:10,4:14:33:112,0,33 0/1:8,1:9:24:24,0,114 0/1:8,1:9:32:32,0,38 +chr7 45148800 . G T 132.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.276;DP=130;Dels=0.01;FS=15.253;HaplotypeScore=9.3624;MLEAC=4;MLEAF=0.500;MQ=30.91;MQ0=0;MQRankSum=1.613;QD=1.02;ReadPosRankSum=0.445;SB=-1.811e+00 GT:AD:DP:GQ:PL 0/1:25,3:28:64:64,0,313 0/1:27,3:30:47:47,0,326 0/1:40,2:42:2:2,0,505 0/1:26,3:29:60:60,0,291 +chr7 47436558 rs2177795 A C 1849.71 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.109;DB;DP=70;Dels=0.00;FS=6.040;HaplotypeScore=2.9861;MLEAC=5;MLEAF=0.625;MQ=34.07;MQ0=0;MQRankSum=-0.489;QD=26.42;ReadPosRankSum=4.126;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,16:17:6:539,6,0 0/1:1,15:16:0:442,0,0 0/1:7,10:17:49:361,0,49 0/1:2,18:20:26:549,0,26 +chr7 47546375 rs334496 C T 80.50 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.051;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.2076;MLEAC=3;MLEAF=0.375;MQ=30.69;MQ0=0;MQRankSum=0.919;QD=26.83;ReadPosRankSum=0.778;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,211 1/1:0,2:2:6:85,6,0 0/0:5,1:6:6:0,6,83 1/1:0,1:1:3:41,3,0 +chr7 47805890 . T A 66.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.332;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.2222;MLEAC=3;MLEAF=0.375;MQ=33.90;MQ0=0;MQRankSum=-2.098;QD=1.41;ReadPosRankSum=0.854;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,1:17:21:0,21,557 0/1:17,4:21:63:63,0,432 0/1:17,3:20:39:39,0,481 0/1:5,1:6:6:6,0,165 +chr7 47869074 . G A 1017.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.023;DP=289;Dels=0.00;FS=53.301;HaplotypeScore=39.9440;MLEAC=4;MLEAF=0.500;MQ=34.05;MQ0=0;MQRankSum=-7.416;QD=3.52;ReadPosRankSum=1.569;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:62,25:87:99:435,0,1440 0/1:60,17:77:99:247,0,1247 0/1:60,15:75:99:225,0,1665 0/1:41,9:50:99:153,0,984 +chr7 47983013 . G A 319.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.006;DP=256;Dels=0.01;FS=49.190;HaplotypeScore=2.7680;MLEAC=3;MLEAF=0.375;MQ=35.59;MQ0=0;MQRankSum=-3.479;QD=1.78;ReadPosRankSum=-1.954;SB=0.729 GT:AD:DP:GQ:PL 0/1:55,10:65:99:195,0,1495 0/1:59,7:66:82:82,0,1590 0/0:71,5:76:20:0,20,1917 0/1:41,5:46:86:86,0,1014 +chr7 47988034 . C T 50.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.486;DP=123;Dels=0.00;FS=4.724;HaplotypeScore=3.5502;MLEAC=1;MLEAF=0.125;MQ=34.18;MQ0=0;MQRankSum=-2.274;QD=2.55;ReadPosRankSum=-1.373;SB=-2.596e-03 GT:AD:DP:GQ:PL 0/0:31,0:31:75:0,75,894 0/0:28,1:29:33:0,33,654 0/0:42,1:43:90:0,90,1025 0/1:16,4:20:87:87,0,314 +chr7 48016305 . C T 61.82 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.801;DP=271;Dels=0.00;FS=10.431;HaplotypeScore=13.2114;MLEAC=4;MLEAF=0.500;MQ=33.35;MQ0=0;MQRankSum=-4.692;QD=0.23;ReadPosRankSum=1.655;SB=-2.410e-01 GT:AD:DP:GQ:PL 0/1:65,7:72:20:20,0,1784 0/1:59,8:67:13:13,0,1391 0/1:82,10:92:49:49,0,2105 0/1:35,5:40:22:22,0,1040 +chr7 48028512 rs3736547 G C 830.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.453;DB;DP=125;Dels=0.00;FS=2.415;HaplotypeScore=0.5392;MLEAC=3;MLEAF=0.375;MQ=38.28;MQ0=0;MQRankSum=-4.307;QD=9.03;ReadPosRankSum=3.160;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,12:37:99:374,0,883 0/0:33,0:33:90:0,90,1220 0/1:21,14:35:99:388,0,710 0/1:16,4:20:99:112,0,436 +chr7 48081095 rs10951942 G T 3120.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.457;DB;DP=196;Dels=0.00;FS=13.622;HaplotypeScore=2.4317;MLEAC=5;MLEAF=0.625;MQ=35.98;MQ0=0;MQRankSum=-1.490;QD=15.92;ReadPosRankSum=1.021;SB=-8.930e+02 GT:AD:DP:GQ:PL 0/1:26,23:49:99:720,0,804 1/1:0,35:35:99:1289,99,0 0/1:33,18:51:99:508,0,1048 0/1:37,24:61:99:649,0,1020 +chr7 48141482 . A T 40.05 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.267;DP=157;Dels=0.01;FS=51.428;HaplotypeScore=5.0564;MLEAC=1;MLEAF=0.125;MQ=31.38;MQ0=0;MQRankSum=-0.004;QD=1.25;ReadPosRankSum=-1.603;SB=-3.769e+00 GT:AD:DP:GQ:PL 0/0:37,1:38:60:0,60,1015 0/0:38,2:40:13:0,13,724 0/0:44,2:46:59:0,59,935 0/1:27,5:32:76:76,0,535 +chr7 48311322 . A T 65.67 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.000;DP=20;Dels=0.00;FS=3.522;HaplotypeScore=3.9192;MLEAC=6;MLEAF=1.00;MQ=19.85;MQ0=0;MQRankSum=0.922;QD=4.38;ReadPosRankSum=-0.922;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:6,1:7:3:24,3,0 1/1:4,2:6:6:47,6,0 ./. 1/1:1,1:2:3:30,3,0 +chr7 48407217 rs1526093 T C 36.76 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.063;DB;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.1663;MLEAC=1;MLEAF=0.125;MQ=41.32;MQ0=0;MQRankSum=0.189;QD=5.25;ReadPosRankSum=-0.693;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:27:0,27,390 0/1:5,2:7:72:72,0,115 0/0:4,0:4:9:0,9,128 0/0:1,0:1:3:0,3,37 +chr7 48443506 . T G 45.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.533;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.1705;MLEAC=3;MLEAF=0.375;MQ=28.65;MQ0=0;MQRankSum=-2.310;QD=0.76;ReadPosRankSum=0.185;SB=-1.450e-01 GT:AD:DP:GQ:PL 0/1:14,4:18:66:66,0,313 0/0:14,0:14:21:0,21,224 0/1:18,3:21:15:15,0,421 0/1:17,2:21:6:6,0,218 +chr7 48467224 rs35073581 A C 245.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.495;DB;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=34.98;MQ0=0;MQRankSum=1.769;QD=16.33;ReadPosRankSum=0.524;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,8:15:99:281,0,178 0/0:13,0:13:33:0,33,411 0/0:15,0:15:42:0,42,561 0/0:7,0:7:18:0,18,203 +chr7 48545976 rs6583448 A G 4339.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.986;DB;DP=140;Dels=0.01;FS=19.673;HaplotypeScore=1.3659;MLEAC=8;MLEAF=1.00;MQ=33.74;MQ0=0;MQRankSum=2.218;QD=30.99;ReadPosRankSum=4.511;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:2,29:31:87:1136,87,0 1/1:9,34:43:99:1273,99,0 1/1:4,28:32:57:943,57,0 1/1:5,28:33:62:987,62,0 +chr7 50468234 . T G 767.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.222;DP=126;Dels=0.00;FS=174.742;HaplotypeScore=3.9847;MLEAC=4;MLEAF=0.500;MQ=30.54;MQ0=0;MQRankSum=-1.056;QD=6.09;ReadPosRankSum=0.753;SB=-1.936e+00 GT:AD:DP:GQ:PL 0/1:23,8:31:99:156,0,533 0/1:15,7:22:99:144,0,259 0/1:26,10:36:99:214,0,443 0/1:23,13:37:99:296,0,386 +chr7 50514736 . C A 44.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.241;DP=146;Dels=0.00;FS=60.496;HaplotypeScore=8.9328;MLEAC=2;MLEAF=0.250;MQ=32.05;MQ0=0;MQRankSum=-3.699;QD=0.73;ReadPosRankSum=3.796;SB=-2.229e+00 GT:AD:DP:GQ:PL 0/0:36,3:39:3:0,3,808 0/0:44,2:46:41:0,41,1132 0/1:36,6:42:41:41,0,954 0/1:16,3:19:44:44,0,278 +chr7 50660731 . A G 238.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.279;DP=188;Dels=0.03;FS=57.103;HaplotypeScore=10.5889;MLEAC=4;MLEAF=0.500;MQ=33.90;MQ0=0;MQRankSum=0.009;QD=1.27;ReadPosRankSum=-0.938;SB=-2.621e-02 GT:AD:DP:GQ:PL 0/1:48,4:52:24:24,0,994 0/1:41,4:45:59:59,0,876 0/1:43,5:48:87:87,0,874 0/1:32,6:38:99:111,0,618 +chr7 51097322 . T G 136.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.018;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=9.2840;MLEAC=4;MLEAF=0.500;MQ=25.30;MQ0=0;MQRankSum=-1.776;QD=1.52;ReadPosRankSum=2.740;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,3:23:33:33,0,374 0/1:24,3:27:32:32,0,218 0/1:12,6:18:79:79,0,170 0/1:17,4:21:35:35,0,211 +chr7 51145202 rs12719026 G T 39.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=6;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=21.37;MQ0=0;MQRankSum=1.026;QD=9.75;ReadPosRankSum=-1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:28,3,0 ./. 1/1:2,1:3:3:44,3,0 +chr7 54487880 rs34565140 A T 251.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.250;DB;DP=76;Dels=0.00;FS=1.176;HaplotypeScore=1.2362;MLEAC=3;MLEAF=0.375;MQ=17.02;MQ0=0;MQRankSum=1.773;QD=4.65;ReadPosRankSum=2.630;SB=-1.107e+02 GT:AD:DP:GQ:PL 0/0:21,0:22:12:0,12,129 0/1:10,11:21:61:191,0,61 0/1:11,4:15:28:59,0,28 0/1:14,3:18:44:44,0,73 +chr7 54617893 . T G 367.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-7.483;DP=235;Dels=0.00;FS=220.510;HaplotypeScore=8.5204;MLEAC=3;MLEAF=0.375;MQ=38.44;MQ0=0;MQRankSum=-6.358;QD=2.22;ReadPosRankSum=1.766;SB=0.526 GT:AD:DP:GQ:PL 0/1:41,10:51:99:167,0,1373 0/1:55,10:65:99:116,0,1833 0/0:62,8:70:13:0,13,2021 0/1:40,8:49:99:127,0,1195 +chr7 55210961 . A C 33.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.803;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.6128;MLEAC=2;MLEAF=0.250;MQ=26.18;MQ0=0;MQRankSum=0.321;QD=1.17;ReadPosRankSum=0.321;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,1:11:21:30,0,21 0/0:25,0:25:30:0,30,291 0/1:16,2:18:19:44,0,19 0/0:9,0:9:3:0,3,38 +chr7 55221735 . G T 142.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.683;DP=207;Dels=0.00;FS=109.819;HaplotypeScore=6.2687;MLEAC=2;MLEAF=0.250;MQ=38.89;MQ0=0;MQRankSum=-6.783;QD=1.40;ReadPosRankSum=-0.173;SB=-2.002e+00 GT:AD:DP:GQ:PL 0/1:42,5:48:25:25,0,1224 0/0:44,7:51:11:0,11,1412 0/1:43,11:54:99:159,0,1399 0/0:52,2:54:99:0,111,1744 +chr7 55238821 . A T 50.54 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.515;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=14.8252;MLEAC=3;MLEAF=0.375;MQ=19.03;MQ0=0;MQRankSum=0.557;QD=1.10;ReadPosRankSum=-1.753;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,1:17:11:11,0,71 0/0:21,2:23:15:0,15,140 0/1:19,3:22:63:63,0,83 0/1:6,1:7:19:19,0,19 +chr7 55328023 rs149000671 TCCG T 315.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.202;DB;DP=19;FS=0.000;HaplotypeScore=14.1061;MLEAC=3;MLEAF=0.375;MQ=25.45;MQ0=0;MQRankSum=0.545;QD=24.30;ReadPosRankSum=1.276;SB=-5.938e+01 GT:AD:DP:GQ:PL 0/0:5,0:5:14:0,14,209 1/1:2,3:3:9:159,9,0 0/1:4,3:7:2:210,0,2 0/0:1,0:1:3:0,3,28 +chr7 55410986 rs6593235 A G 47.03 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.731;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.3289;MLEAC=5;MLEAF=0.833;MQ=19.05;MQ0=0;MQRankSum=0.731;QD=11.76;ReadPosRankSum=0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:31,3,0 0/0:1,0:1:3:0,3,25 ./. 1/1:0,3:3:6:55,6,0 +chr7 55629723 rs1404563 A G 178.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.106;DB;DP=162;Dels=0.00;FS=5.402;HaplotypeScore=1.4762;MLEAC=2;MLEAF=0.250;MQ=38.66;MQ0=0;MQRankSum=-4.173;QD=2.45;ReadPosRankSum=0.148;SB=-5.596e+01 GT:AD:DP:GQ:PL 0/1:25,8:33:99:170,0,855 0/1:33,7:40:50:50,0,1021 0/0:53,0:53:99:0,156,2096 0/0:36,0:36:99:0,102,1360 +chr7 56243420 . T C 79 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.335;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=2.2312;MLEAC=1;MLEAF=0.125;MQ=29.49;MQ0=0;MQRankSum=-1.049;QD=4.94;ReadPosRankSum=-0.662;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:30:0,30,353 0/0:23,0:23:57:0,57,677 0/0:18,1:19:24:0,24,519 0/1:10,5:15:99:115,0,210 +chr7 57689929 . G C 86.51 . AC=4;AF=1.00;AN=4;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=22.52;MQ0=0;QD=17.30;SB=-5.675e+01 GT:AD:DP:GQ:PL ./. ./. 1/1:0,2:2:6:61,6,0 1/1:1,2:3:6:60,6,0 +chr7 57882753 . T G 84.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.879;DP=93;Dels=0.01;FS=2.358;HaplotypeScore=3.1132;MLEAC=4;MLEAF=0.500;MQ=15.15;MQ0=0;MQRankSum=2.694;QD=0.91;ReadPosRankSum=-0.707;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,2:21:17:17,0,55 0/1:24,3:28:64:64,0,100 0/1:15,4:20:19:19,0,55 0/1:20,2:23:25:27,0,25 +chr7 62609177 rs113361907 C A 86.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.672;DB;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7729;MLEAC=3;MLEAF=0.375;MQ=19.41;MQ0=0;MQRankSum=1.493;QD=1.66;ReadPosRankSum=-0.492;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,0:17:9:0,9,98 0/1:18,6:24:86:86,0,116 0/1:18,3:21:8:8,0,118 0/1:6,1:7:31:34,0,31 +chr7 63224612 . C G 162.17 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.031;DP=31;Dels=0.00;FS=2.696;HaplotypeScore=1.2058;MLEAC=7;MLEAF=0.875;MQ=15.31;MQ0=0;MQRankSum=1.984;QD=5.23;ReadPosRankSum=-1.606;SB=-2.659e+01 GT:AD:DP:GQ:PL 1/1:3,2:5:3:25,3,0 0/1:5,4:9:20:37,0,20 1/1:4,5:9:9:90,9,0 1/1:5,3:8:6:52,6,0 +chr7 63226129 rs7804409 G T 342.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.912;DB;DP=53;Dels=0.00;FS=1.982;HaplotypeScore=1.8938;MLEAC=3;MLEAF=0.375;MQ=22.08;MQ0=0;MQRankSum=2.191;QD=8.36;ReadPosRankSum=-0.367;SB=-7.394e+01 GT:AD:DP:GQ:PL 0/0:12,0:12:18:0,18,160 0/1:6,5:11:75:89,0,75 0/1:7,10:17:18:201,0,18 0/1:8,5:13:96:96,0,149 +chr7 63538393 . G A 160.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.261;DP=147;Dels=0.01;FS=64.549;HaplotypeScore=3.1395;MLEAC=3;MLEAF=0.375;MQ=15.88;MQ0=0;MQRankSum=3.757;QD=1.18;ReadPosRankSum=3.630;SB=1.22 GT:AD:DP:GQ:PL 0/1:36,4:40:78:78,0,152 0/1:45,4:49:80:80,0,81 0/1:42,4:46:44:44,0,167 0/0:11,0:11:3:0,3,35 +chr7 63563237 . C G 35.24 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.164;DP=75;Dels=0.01;FS=62.363;HaplotypeScore=2.0319;MLEAC=2;MLEAF=0.250;MQ=14.55;MQ0=0;MQRankSum=-0.188;QD=0.90;ReadPosRankSum=0.307;SB=-2.815e+00 GT:AD:DP:GQ:PL 0/0:18,3:21:9:0,9,93 0/1:12,4:16:20:42,0,20 0/1:20,3:23:33:33,0,52 0/0:14,0:14:3:0,3,26 +chr7 63575006 rs7800675 A G 158.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.237;DB;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=3.1118;MLEAC=3;MLEAF=0.375;MQ=21.37;MQ0=0;MQRankSum=0.079;QD=4.82;ReadPosRankSum=1.713;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:3:0,3,29 0/1:6,6:12:16:106,0,16 0/1:4,9:13:23:58,0,23 0/1:6,1:7:20:36,0,20 +chr7 63602429 rs9654757 G A 60.74 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.059;DB;DP=95;Dels=0.00;FS=6.585;HaplotypeScore=0.4438;MLEAC=3;MLEAF=0.375;MQ=11.49;MQ0=0;MQRankSum=-1.561;QD=0.91;ReadPosRankSum=2.046;SB=-2.936e+01 GT:AD:DP:GQ:PL 0/0:28,0:28:9:0,9,69 0/1:17,5:22:16:31,0,16 0/1:16,12:28:39:59,0,39 0/1:12,5:17:13:13,0,70 +chr7 64324625 . G T 232.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.087;DP=39;Dels=0.00;FS=8.669;HaplotypeScore=1.4654;MLEAC=4;MLEAF=0.500;MQ=25.67;MQ0=0;MQRankSum=1.197;QD=5.97;ReadPosRankSum=1.124;SB=-1.229e+00 GT:AD:DP:GQ:PL 0/1:4,3:7:50:85,0,50 0/1:8,3:11:52:52,0,76 0/1:10,4:14:96:96,0,104 0/1:4,3:7:13:42,0,13 +chr7 64466831 . G C 64.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.271;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.5743;MLEAC=3;MLEAF=0.375;MQ=17.23;MQ0=0;MQRankSum=2.662;QD=0.70;ReadPosRankSum=3.349;SB=-1.190e-02 GT:AD:DP:GQ:PL 0/0:30,0:30:6:0,6,54 0/1:33,3:36:46:46,0,150 0/1:25,1:26:14:14,0,123 0/1:27,3:30:46:46,0,135 +chr7 66413608 . G A 82.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.443;DP=79;Dels=0.00;FS=60.831;HaplotypeScore=1.2234;MLEAC=3;MLEAF=0.375;MQ=31.04;MQ0=0;MQRankSum=-0.923;QD=1.33;ReadPosRankSum=-0.344;SB=-1.493e+00 GT:AD:DP:GQ:PL 0/0:15,1:17:3:0,3,376 0/1:11,3:14:67:67,0,306 0/1:23,5:28:45:45,0,653 0/1:18,2:20:11:11,0,389 +chr7 66751272 . T C 67.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.392;DP=296;Dels=0.01;FS=35.608;HaplotypeScore=8.7736;MLEAC=3;MLEAF=0.375;MQ=9.94;MQ0=0;MQRankSum=1.617;QD=0.45;ReadPosRankSum=-1.178;SB=1.72 GT:AD:DP:GQ:PL 0/0:69,1:70:15:0,15,140 0/0:73,1:74:27:0,27,251 1/1:64,5:69:6:55,6,0 0/1:79,2:81:57:58,0,57 +chr7 70250516 . T A 43.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.723;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.9175;MLEAC=1;MLEAF=0.125;MQ=38.73;MQ0=0;MQRankSum=-2.135;QD=1.00;ReadPosRankSum=-2.304;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:48,2:50:42:0,42,1282 0/0:44,0:44:99:0,102,1388 0/0:60,1:61:99:0,110,1893 0/1:39,5:44:80:80,0,929 +chr7 70254801 . G C 77.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.459;DP=131;Dels=0.00;FS=24.791;HaplotypeScore=6.9756;MLEAC=4;MLEAF=0.500;MQ=34.39;MQ0=0;MQRankSum=-2.181;QD=0.59;ReadPosRankSum=0.436;SB=-1.085e+00 GT:AD:DP:GQ:PL 0/1:24,2:26:5:5,0,489 0/1:30,3:33:41:41,0,529 0/1:37,3:41:18:18,0,850 0/1:27,4:31:55:55,0,594 +chr7 72420444 . C T 54.38 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.413;DP=164;Dels=0.00;FS=37.038;HaplotypeScore=1.6870;MLEAC=2;MLEAF=0.250;MQ=19.07;MQ0=0;MQRankSum=-2.496;QD=0.65;ReadPosRankSum=3.695;SB=0.489 GT:AD:DP:GQ:PL 0/1:17,17:34:80:80,0,94 0/0:28,14:42:14:0,14,380 0/1:35,15:50:15:15,0,458 0/0:32,6:38:10:0,10,285 +chr7 72483668 rs72610122 A G 3358.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=9.055;DB;DP=278;Dels=0.00;FS=42.653;HaplotypeScore=1.4825;MLEAC=8;MLEAF=1.00;MQ=16.93;MQ0=0;MQRankSum=3.175;QD=12.08;ReadPosRankSum=6.465;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:11,63:74:99:1030,105,0 1/1:17,49:66:78:764,78,0 1/1:10,64:74:78:794,78,0 1/1:15,49:64:78:770,78,0 +chr7 72856962 . A G 110.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.859;DP=138;Dels=0.00;FS=23.959;HaplotypeScore=5.0032;MLEAC=2;MLEAF=0.250;MQ=32.84;MQ0=0;MQRankSum=-0.624;QD=1.63;ReadPosRankSum=-2.565;SB=0.148 GT:AD:DP:GQ:PL 0/0:29,2:31:41:0,41,767 0/1:27,5:32:86:86,0,672 0/0:38,1:39:54:0,54,1011 0/1:31,5:36:66:66,0,699 +chr7 73008676 . T G 673.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.381;DP=111;Dels=0.00;FS=43.669;HaplotypeScore=5.2180;MLEAC=4;MLEAF=0.500;MQ=26.77;MQ0=0;MQRankSum=1.738;QD=6.07;ReadPosRankSum=3.033;SB=-1.098e+02 GT:AD:DP:GQ:PL 0/1:15,8:23:99:173,0,273 0/1:23,5:28:99:120,0,254 0/1:21,9:30:99:196,0,195 0/1:20,10:30:99:227,0,155 +chr7 73151344 . C G 116.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.908;DP=222;Dels=0.01;FS=138.173;HaplotypeScore=21.8744;MLEAC=2;MLEAF=0.250;MQ=31.38;MQ0=0;MQRankSum=-5.940;QD=1.12;ReadPosRankSum=3.792;SB=-1.515e+00 GT:AD:DP:GQ:PL 0/1:40,10:51:98:98,0,1148 0/1:45,7:52:60:60,0,829 0/0:45,7:52:49:0,49,1114 0/0:57,5:64:98:0,98,1368 +chr7 73449846 rs17146001 G A 590.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.179;DB;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=0.7755;MLEAC=4;MLEAF=0.500;MQ=31.46;MQ0=0;MQRankSum=-2.485;QD=9.84;ReadPosRankSum=0.153;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,5:13:99:130,0,264 0/1:10,9:19:99:231,0,249 0/1:6,10:16:99:264,0,167 0/1:10,1:11:7:7,0,302 +chr7 73520232 . T A 362.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.374;DP=102;Dels=0.00;FS=117.770;HaplotypeScore=2.2345;MLEAC=4;MLEAF=0.500;MQ=34.03;MQ0=0;MQRankSum=-3.044;QD=3.55;ReadPosRankSum=0.808;SB=-2.507e+00 GT:AD:DP:GQ:PL 0/1:20,4:24:74:74,0,650 0/1:25,3:28:34:34,0,645 0/1:24,8:32:99:201,0,629 0/1:13,5:18:96:96,0,359 +chr7 73530159 . G T 138.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.865;DP=92;Dels=0.01;FS=74.541;HaplotypeScore=9.1150;MLEAC=4;MLEAF=0.500;MQ=33.55;MQ0=0;MQRankSum=-4.766;QD=1.51;ReadPosRankSum=0.097;SB=-2.816e-01 GT:AD:DP:GQ:PL 0/1:16,3:19:14:14,0,478 0/1:20,5:25:74:74,0,593 0/1:23,3:26:14:14,0,533 0/1:15,5:21:79:79,0,316 +chr7 73801043 . C T 59.60 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.690;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.4969;MLEAC=3;MLEAF=0.375;MQ=28.73;MQ0=0;MQRankSum=-0.159;QD=4.97;ReadPosRankSum=-1.009;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,3:7:9:87,9,0 0/1:4,1:5:18:18,0,84 0/0:8,0:8:12:0,12,148 0/0:4,0:4:6:0,6,70 +chr7 73927358 . C T 33.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.422;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=4.9823;MLEAC=4;MLEAF=0.500;MQ=21.83;MQ0=0;MQRankSum=-0.147;QD=0.93;ReadPosRankSum=1.471;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:18:18,0,131 0/0:6,0:6:6:0,6,55 0/1:13,4:17:34:34,0,153 1/1:6,1:7:3:24,3,0 +chr7 73950568 . T C 72.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.824;DP=79;Dels=0.03;FS=16.907;HaplotypeScore=13.1967;MLEAC=4;MLEAF=0.500;MQ=25.29;MQ0=0;MQRankSum=2.304;QD=0.92;ReadPosRankSum=0.439;SB=-1.233e-01 GT:AD:DP:GQ:PL 0/1:13,2:15:43:43,0,97 0/1:15,2:18:28:28,0,96 0/1:18,2:20:32:32,0,105 0/1:20,4:24:12:12,0,99 +chr7 73972024 . G A 84.20 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.488;DP=111;Dels=0.01;FS=1.722;HaplotypeScore=3.5803;MLEAC=2;MLEAF=0.250;MQ=27.11;MQ0=0;MQRankSum=2.028;QD=1.48;ReadPosRankSum=-1.084;SB=-4.463e+01 GT:AD:DP:GQ:PL 0/1:23,2:25:14:14,0,260 0/1:27,4:31:72:111,0,72 0/0:32,0:32:39:0,39,400 0/0:22,0:22:15:0,15,140 +chr7 74016622 . G A 142.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.877;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.2435;MLEAC=3;MLEAF=0.375;MQ=32.76;MQ0=0;MQRankSum=-2.641;QD=1.85;ReadPosRankSum=-0.858;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,1:24:9:0,9,411 0/1:22,5:27:51:51,0,538 0/1:21,3:24:49:49,0,389 0/1:21,4:26:85:85,0,354 +chr7 74482567 . A G 97.10 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.108;DP=113;Dels=0.02;FS=34.974;HaplotypeScore=9.2351;MLEAC=2;MLEAF=0.250;MQ=27.74;MQ0=0;MQRankSum=-2.103;QD=1.83;ReadPosRankSum=3.616;SB=-4.479e+00 GT:AD:DP:GQ:PL 0/1:18,7:25:99:131,0,344 0/0:30,3:34:34:0,34,599 0/1:25,2:27:3:3,0,477 0/0:22,3:25:11:0,11,538 +chr7 74615810 . A T 138.48 . AC=6;AF=1.00;AN=6;BaseQRankSum=-1.670;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.6633;MLEAC=5;MLEAF=0.833;MQ=22.04;MQ0=0;MQRankSum=2.927;QD=6.92;ReadPosRankSum=1.545;SB=21.65 GT:AD:DP:GQ:PL 1/1:6,1:7:3:39,3,0 ./. 1/1:7,2:9:6:61,6,0 1/1:1,2:4:6:74,6,0 +chr7 75051809 . T G 63.30 . AC=5;AF=0.833;AN=6;BaseQRankSum=-0.684;DP=13;Dels=0.00;FS=9.700;HaplotypeScore=2.3247;MLEAC=5;MLEAF=0.833;MQ=19.56;MQ0=0;MQRankSum=0.322;QD=5.75;ReadPosRankSum=-0.956;SB=3.36 GT:AD:DP:GQ:PL 1/1:4,2:6:6:51,6,0 1/1:1,1:2:3:26,3,0 ./. 0/1:1,2:3:25:25,0,26 +chr7 75066911 . T G 32.27 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.332;DP=117;Dels=0.00;FS=2.294;HaplotypeScore=6.6474;MLEAC=1;MLEAF=0.125;MQ=16.71;MQ0=0;MQRankSum=1.240;QD=1.24;ReadPosRankSum=2.216;SB=0.128 GT:AD:DP:GQ:PL 0/0:25,0:25:12:0,12,132 0/1:22,4:26:42:67,0,42 0/0:39,1:40:2:0,2,210 0/0:24,2:26:5:0,5,214 +chr7 75174299 rs60028636 A AT 235.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.235;DB;DP=117;FS=0.000;HaplotypeScore=16.7905;MLEAC=3;MLEAF=0.375;MQ=29.82;MQ0=0;MQRankSum=-4.355;QD=2.77;RPA=9,10;RU=T;ReadPosRankSum=0.641;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:31,0:31:81:0,81,809 0/1:23,5:25:75:75,0,512 0/1:25,6:23:29:29,0,416 0/1:14,9:19:99:184,0,226 +chr7 75583332 . C A 37.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.420;DP=162;Dels=0.00;FS=116.784;HaplotypeScore=5.9245;MLEAC=2;MLEAF=0.250;MQ=32.57;MQ0=0;MQRankSum=-3.625;QD=0.44;ReadPosRankSum=1.018;SB=-1.513e+00 GT:AD:DP:GQ:PL 0/0:34,4:38:17:0,17,1089 0/1:34,6:40:63:63,0,987 0/1:41,4:45:15:15,0,1197 0/0:35,4:39:21:0,21,851 +chr7 75634687 rs1044484 G A 347.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.513;DB;DP=160;Dels=0.00;FS=8.518;HaplotypeScore=13.1608;MLEAC=3;MLEAF=0.375;MQ=35.92;MQ0=0;MQRankSum=-2.411;QD=3.13;ReadPosRankSum=-0.542;SB=-1.068e+02 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,138,1773 0/1:29,10:39:99:244,0,809 0/1:36,4:40:59:59,0,792 0/1:25,5:32:88:88,0,692 +chr7 76023131 rs35508921 A AG 468.58 . AC=5;AF=0.833;AN=6;BaseQRankSum=-1.736;DB;DP=19;FS=0.000;HaplotypeScore=2.9178;MLEAC=5;MLEAF=0.833;MQ=26.57;MQ0=0;MQRankSum=0.000;QD=24.66;RPA=2,3;RU=G;ReadPosRankSum=1.488;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:2,5:5:15:203,15,0 ./. 1/1:1,6:6:18:244,18,0 0/1:2,2:3:18:72,0,18 +chr7 76943577 . T G 370.09 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.354;DP=51;Dels=0.04;FS=3.112;HaplotypeScore=12.6428;MLEAC=5;MLEAF=0.625;MQ=27.31;MQ0=0;MQRankSum=-1.327;QD=7.26;ReadPosRankSum=2.004;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,7:18:99:129,0,137 0/1:7,5:12:92:111,0,92 0/1:10,3:13:39:39,0,155 1/1:2,4:6:12:136,12,0 +chr7 77423574 rs7953 G A 1038.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.350;DB;DP=104;Dels=0.04;FS=0.794;HaplotypeScore=1.9601;MLEAC=4;MLEAF=0.500;MQ=36.46;MQ0=0;MQRankSum=-2.312;QD=9.99;ReadPosRankSum=1.480;SB=-4.620e+02 GT:AD:DP:GQ:PL 0/1:17,9:26:99:286,0,459 0/1:13,11:24:99:364,0,380 0/1:28,13:41:99:343,0,848 0/1:6,3:9:88:88,0,198 +chr7 77649093 . A C 64.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.639;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.2410;MLEAC=2;MLEAF=0.250;MQ=38.12;MQ0=0;MQRankSum=-1.808;QD=1.29;ReadPosRankSum=0.871;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:25,0:25:27:0,27,333 0/1:26,4:30:54:54,0,584 0/0:29,1:30:42:0,42,772 0/1:18,2:20:52:52,0,139 +chr7 77754957 . C T 772.26 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.856;DP=62;Dels=0.00;FS=4.130;HaplotypeScore=5.9932;MLEAC=5;MLEAF=0.625;MQ=31.16;MQ0=0;MQRankSum=1.735;QD=12.46;ReadPosRankSum=1.687;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,9:13:27:298,27,0 0/1:14,4:19:99:122,0,156 0/1:11,9:20:84:253,0,84 0/1:5,5:10:7:144,0,7 +chr7 81372401 . C A 86.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.801;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4537;MLEAC=3;MLEAF=0.375;MQ=27.43;MQ0=0;MQRankSum=0.880;QD=2.02;ReadPosRankSum=1.800;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:57:57,0,236 0/0:23,0:23:27:0,27,263 0/1:16,2:18:26:26,0,250 0/1:4,2:6:38:47,0,38 +chr7 81588636 rs1229502 G A 1824.57 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.666;DB;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.4978;MLEAC=4;MLEAF=0.500;MQ=41.19;MQ0=0;MQRankSum=-2.365;QD=23.39;ReadPosRankSum=0.894;SB=-8.988e+02 GT:AD:DP:GQ:PL 0/0:30,0:30:90:0,90,1196 1/1:7,28:35:32:1045,32,0 0/1:16,19:35:99:680,0,592 0/1:4,4:8:94:148,0,94 +chr7 81601231 rs1229505 C G 417.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.436;DB;DP=56;Dels=0.02;FS=3.136;HaplotypeScore=8.8162;MLEAC=4;MLEAF=0.500;MQ=23.54;MQ0=0;MQRankSum=1.733;QD=10.71;ReadPosRankSum=2.096;SB=0.988 GT:AD:DP:GQ:PL 0/0:15,1:17:21:0,21,214 1/1:3,11:14:27:307,27,0 0/1:14,5:20:92:124,0,92 0/1:3,1:4:25:35,0,25 +chr7 82450364 rs2522832 A G 202.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.639;DB;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.9615;MLEAC=1;MLEAF=0.125;MQ=33.39;MQ0=0;MQRankSum=-1.811;QD=6.15;ReadPosRankSum=2.668;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,10:33:99:239,0,427 0/0:41,0:41:99:0,114,1369 0/0:42,0:42:99:0,114,1414 0/0:35,0:35:96:0,96,1100 +chr7 82583609 rs10487648 A C 773.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.037;DB;DP=277;Dels=0.00;FS=5.413;HaplotypeScore=1.2335;MLEAC=1;MLEAF=0.125;MQ=36.36;MQ0=0;MQRankSum=-1.635;QD=10.18;ReadPosRankSum=-0.522;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:48,28:76:99:810,0,1312 0/0:85,0:85:99:0,241,3139 0/0:86,0:86:99:0,250,3125 0/0:30,0:30:72:0,72,887 +chr7 83029438 rs2722974 C T 3233.06 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.452;DB;DP=220;Dels=0.00;FS=25.698;HaplotypeScore=5.3784;MLEAC=5;MLEAF=0.625;MQ=31.82;MQ0=0;MQRankSum=0.572;QD=14.70;ReadPosRankSum=4.747;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:8,52:60:99:1695,129,0 0/1:35,27:62:99:874,0,515 0/1:47,22:69:99:589,0,636 0/1:23,6:29:99:120,0,255 +chr7 84594517 . A G 35.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.893;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.0026;MLEAC=3;MLEAF=0.375;MQ=26.05;MQ0=0;MQRankSum=0.233;QD=0.70;ReadPosRankSum=0.816;SB=12.96 GT:AD:DP:GQ:PL 0/1:15,2:17:28:28,0,200 0/1:14,2:16:42:42,0,168 0/1:16,1:17:6:6,0,198 0/0:4,0:6:6:0,6,63 +chr7 84610800 rs10225455 A G 63.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DB;DP=8;Dels=0.00;FS=15.441;HaplotypeScore=0.4833;MLEAC=4;MLEAF=1.00;MQ=17.67;MQ0=0;MQRankSum=1.231;QD=10.54;ReadPosRankSum=-0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:36,3,0 1/1:3,2:5:6:61,6,0 ./. ./. +chr7 84751198 . T A 120.21 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.023;DP=79;Dels=0.04;FS=10.344;HaplotypeScore=10.8789;MLEAC=4;MLEAF=0.500;MQ=26.64;MQ0=0;MQRankSum=-0.631;QD=1.52;ReadPosRankSum=0.031;SB=-2.288e-01 GT:AD:DP:GQ:PL 0/1:14,1:15:9:9,0,110 0/1:19,4:23:58:58,0,177 0/1:24,5:29:82:82,0,285 0/1:6,3:9:13:13,0,41 +chr7 85148105 rs2463692 A G 99.67 . AC=6;AF=1.00;AN=6;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=30.05;MQ0=0;QD=24.92;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:25,3,0 1/1:0,1:1:3:34,3,0 1/1:0,2:2:6:76,6,0 ./. +chr7 86468154 . G T 46.72 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.241;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.1499;MLEAC=2;MLEAF=0.333;MQ=33.13;MQ0=0;MQRankSum=-2.569;QD=2.03;ReadPosRankSum=-2.050;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:75:75,0,122 0/0:14,1:15:5:0,5,308 0/1:10,1:11:8:8,0,223 ./. +chr7 86822992 . T A 417.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.552;DP=70;Dels=0.03;FS=0.000;HaplotypeScore=0.9809;MLEAC=3;MLEAF=0.375;MQ=35.28;MQ0=0;MQRankSum=-4.129;QD=6.74;ReadPosRankSum=0.621;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,6:22:99:159,0,401 0/1:11,7:18:99:184,0,243 0/1:15,5:20:99:118,0,172 0/0:8,0:8:18:0,18,225 +chr7 87082292 rs1202283 G A 1039.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.937;DB;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.9039;MLEAC=3;MLEAF=0.375;MQ=38.85;MQ0=0;MQRankSum=-2.848;QD=9.63;ReadPosRankSum=0.129;SB=-3.380e+02 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,117,1597 0/1:36,14:51:99:419,0,1146 0/1:26,14:40:99:456,0,806 0/1:10,7:17:99:208,0,299 +chr7 87151570 . C T 81.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.688;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.8852;MLEAC=4;MLEAF=0.500;MQ=15.28;MQ0=0;MQRankSum=3.790;QD=0.58;ReadPosRankSum=0.494;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:36,2:38:38:38,0,61 0/1:39,1:41:17:17,0,75 0/1:32,2:34:41:56,0,41 0/1:28,1:29:13:13,0,43 +chr7 87179443 rs2032588 G A 999.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.321;DB;DP=134;Dels=0.00;FS=15.376;HaplotypeScore=2.8458;MLEAC=3;MLEAF=0.375;MQ=37.06;MQ0=0;MQRankSum=-0.381;QD=10.64;ReadPosRankSum=0.512;SB=-3.680e+02 GT:AD:DP:GQ:PL 0/1:23,9:32:99:274,0,659 0/0:40,0:40:99:0,111,1424 0/1:24,14:38:99:426,0,653 0/1:13,11:24:99:343,0,335 +chr7 87536515 . T C 116.99 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.319;DP=106;Dels=0.03;FS=0.000;HaplotypeScore=5.6754;MLEAC=2;MLEAF=0.250;MQ=23.28;MQ0=0;MQRankSum=1.764;QD=1.70;ReadPosRankSum=-0.191;SB=0.384 GT:AD:DP:GQ:PL 0/1:27,5:32:99:127,0,148 0/0:28,1:29:16:0,16,333 0/1:30,4:34:31:31,0,360 0/0:8,0:8:9:0,9,94 +chr7 87795282 rs17150304 C G 358.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.017;DB;DP=245;Dels=0.00;FS=1.460;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.125;MQ=37.37;MQ0=0;MQRankSum=-2.299;QD=5.61;ReadPosRankSum=1.449;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:48,16:64:99:395,0,1632 0/0:80,0:80:99:0,226,2874 0/0:72,0:72:99:0,211,2707 0/0:28,0:29:75:0,75,944 +chr7 87816096 . C A 30.10 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.974;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.4894;MLEAC=1;MLEAF=0.125;MQ=36.65;MQ0=0;MQRankSum=-1.570;QD=6.02;ReadPosRankSum=-0.217;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,1:16:0:0,0,380 0/0:23,0:23:33:0,33,407 0/0:11,0:12:21:0,21,281 0/1:3,2:5:32:65,0,32 +chr7 87840189 . A T 126.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.441;DP=90;Dels=0.00;FS=109.441;HaplotypeScore=1.7268;MLEAC=3;MLEAF=0.375;MQ=29.81;MQ0=0;MQRankSum=1.615;QD=1.61;ReadPosRankSum=-0.744;SB=4.79 GT:AD:DP:GQ:PL 0/1:10,3:13:68:68,0,242 0/1:31,3:34:7:7,0,928 0/1:26,5:32:94:94,0,558 0/0:11,0:11:27:0,27,323 +chr7 88965609 rs6963781 A G 258.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.554;DB;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9807;MLEAC=1;MLEAF=0.125;MQ=39.45;MQ0=0;MQRankSum=-1.505;QD=7.19;ReadPosRankSum=0.388;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:26,10:36:99:295,0,763 0/0:38,0:38:99:0,114,1559 0/0:42,0:42:99:0,120,1598 0/0:22,0:22:60:0,60,787 +chr7 89976123 . C A 88.38 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.075;DP=103;Dels=0.03;FS=2.310;HaplotypeScore=10.1375;MLEAC=4;MLEAF=0.500;MQ=27.68;MQ0=0;MQRankSum=-0.630;QD=0.86;ReadPosRankSum=0.644;SB=-1.257e+00 GT:AD:DP:GQ:PL 0/1:21,2:23:11:11,0,380 0/1:26,2:28:8:8,0,369 0/1:23,2:25:6:6,0,451 0/1:19,5:24:99:104,0,204 +chr7 90233618 rs6465273 G A 327.91 . AC=2;AF=0.250;AN=8;BaseQRankSum=3.030;DB;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=5.9232;MLEAC=2;MLEAF=0.250;MQ=30.96;MQ0=0;MQRankSum=-0.361;QD=10.93;ReadPosRankSum=-0.141;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:92:124,0,92 0/1:6,8:14:18:245,0,18 0/0:20,0:21:33:0,33,433 0/0:5,0:5:9:0,9,117 +chr7 91734965 . G T 150.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.667;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9285;MLEAC=4;MLEAF=0.500;MQ=32.39;MQ0=0;MQRankSum=-2.701;QD=1.79;ReadPosRankSum=2.701;SB=-1.310e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:53:53,0,335 0/1:18,5:23:62:62,0,338 0/1:27,4:31:69:69,0,574 0/1:6,1:8:8:8,0,122 +chr7 91864193 . T C 55.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.293;DP=225;Dels=0.01;FS=95.456;HaplotypeScore=12.4355;MLEAC=3;MLEAF=0.375;MQ=27.59;MQ0=0;MQRankSum=-2.268;QD=0.33;ReadPosRankSum=1.737;SB=-2.091e+00 GT:AD:DP:GQ:PL 0/1:58,6:64:2:2,0,1127 0/0:54,2:57:39:0,39,911 0/1:63,8:71:49:49,0,1140 0/1:26,3:31:45:45,0,423 +chr7 91864204 rs148671212 G A 145.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.533;DB;DP=185;Dels=0.01;FS=72.144;HaplotypeScore=19.8141;MLEAC=4;MLEAF=0.500;MQ=24.50;MQ0=0;MQRankSum=-2.620;QD=0.79;ReadPosRankSum=2.556;SB=-1.859e-02 GT:AD:DP:GQ:PL 0/1:46,4:50:39:39,0,537 0/1:39,9:48:56:56,0,575 0/1:54,8:62:66:66,0,747 0/1:20,3:23:27:27,0,254 +chr7 92071513 . T A 107.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.805;DP=60;Dels=0.00;FS=51.666;HaplotypeScore=1.2299;MLEAC=4;MLEAF=0.500;MQ=22.08;MQ0=0;MQRankSum=-1.015;QD=1.80;ReadPosRankSum=-1.015;SB=-3.624e-01 GT:AD:DP:GQ:PL 0/1:13,2:15:26:26,0,178 0/1:14,5:19:59:59,0,177 0/1:11,1:12:14:14,0,119 0/1:8,6:14:51:51,0,87 +chr7 92119284 rs972923 C G 1245.02 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.237;DB;DP=54;Dels=0.00;FS=16.902;HaplotypeScore=0.4669;MLEAC=8;MLEAF=1.00;MQ=26.96;MQ0=0;MQRankSum=1.591;QD=23.06;ReadPosRankSum=0.672;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:33:372,33,0 1/1:2,13:15:33:371,33,0 1/1:1,14:15:33:375,33,0 1/1:3,8:11:15:166,15,0 +chr7 92732594 . T G 31.76 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.450;DP=118;Dels=0.00;FS=30.456;HaplotypeScore=1.2396;MLEAC=2;MLEAF=0.250;MQ=35.60;MQ0=0;MQRankSum=-0.736;QD=0.42;ReadPosRankSum=-1.274;SB=-1.357e+00 GT:AD:DP:GQ:PL 0/0:32,2:34:15:0,15,750 0/1:33,4:37:22:22,0,1008 0/1:33,5:38:51:51,0,926 0/0:9,0:9:21:0,21,253 +chr7 93055840 . C A 43.20 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.744;DP=72;Dels=0.00;FS=2.426;HaplotypeScore=18.1652;MLEAC=2;MLEAF=0.250;MQ=20.59;MQ0=0;MQRankSum=1.631;QD=1.17;ReadPosRankSum=-0.333;SB=-1.455e-01 GT:AD:DP:GQ:PL 0/0:16,0:18:21:0,21,222 0/1:17,4:21:69:69,0,190 0/1:14,1:16:15:15,0,82 0/0:17,0:17:12:0,12,110 +chr7 93074519 rs972978 G C 36.26 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.406;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.4434;MLEAC=4;MLEAF=0.667;MQ=22.04;MQ0=0;MQRankSum=1.537;QD=7.25;ReadPosRankSum=-0.988;SB=-2.925e+01 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,28 ./. 1/1:1,2:3:3:40,3,0 1/1:1,1:2:3:34,3,0 +chr7 93091488 rs3802051 C T 723.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.245;DB;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.4666;MLEAC=4;MLEAF=0.500;MQ=30.87;MQ0=0;MQRankSum=-0.134;QD=11.67;ReadPosRankSum=-0.104;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,7:17:99:186,0,188 0/1:6,9:15:99:251,0,110 0/1:15,9:24:99:272,0,400 0/1:4,2:6:55:57,0,55 +chr7 93551428 rs4262 C T 226.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.137;DB;DP=45;Dels=0.00;FS=2.561;HaplotypeScore=1.5144;MLEAC=4;MLEAF=0.500;MQ=36.33;MQ0=0;MQRankSum=0.275;QD=5.04;ReadPosRankSum=0.858;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:26:26,0,155 0/1:7,2:9:58:58,0,213 0/1:8,3:11:99:99,0,247 0/1:13,3:16:86:86,0,178 +chr7 93555350 . C T 224.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.901;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.1727;MLEAC=4;MLEAF=0.500;MQ=33.77;MQ0=0;MQRankSum=-3.188;QD=2.27;ReadPosRankSum=0.701;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,2:26:25:25,0,387 0/1:29,4:33:63:63,0,385 0/1:24,9:33:99:165,0,467 0/1:6,1:7:14:14,0,110 +chr7 94024324 . T A 55.46 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.144;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=3;MLEAF=0.375;MQ=29.75;MQ0=0;MQRankSum=-2.450;QD=1.01;ReadPosRankSum=0.957;SB=0.250 GT:AD:DP:GQ:PL 0/1:13,3:16:52:52,0,121 0/1:19,2:21:39:39,0,99 0/1:17,1:18:6:6,0,140 0/0:8,0:8:12:0,12,137 +chr7 94038934 rs42518 C T 4748.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.692;DB;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.4142;MLEAC=7;MLEAF=0.875;MQ=37.04;MQ0=0;MQRankSum=-0.499;QD=28.95;ReadPosRankSum=0.858;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:2,41:43:99:1525,120,0 0/1:28,26:54:99:872,0,840 1/1:3,38:41:89:1480,89,0 1/1:2,24:26:52:871,52,0 +chr7 94049648 . G C 84.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.281;DP=107;Dels=0.01;FS=45.790;HaplotypeScore=3.6184;MLEAC=3;MLEAF=0.375;MQ=34.06;MQ0=0;MQRankSum=-4.429;QD=1.09;ReadPosRankSum=3.509;SB=1.12 GT:AD:DP:GQ:PL 0/1:21,4:25:75:75,0,489 0/1:23,5:28:20:20,0,603 0/0:26,3:29:24:0,24,810 0/1:21,3:24:33:33,0,541 +chr7 94049773 . G A 44 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.752;DP=118;Dels=0.00;FS=10.220;HaplotypeScore=3.7597;MLEAC=1;MLEAF=0.125;MQ=36.01;MQ0=0;MQRankSum=-1.959;QD=1.57;ReadPosRankSum=-0.289;SB=-2.023e+00 GT:AD:DP:GQ:PL 0/0:22,0:22:51:0,51,560 0/0:25,1:26:31:0,31,624 0/0:40,2:42:25:0,25,1032 0/1:24,4:28:80:80,0,429 +chr7 94056316 . A G 138.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.947;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.1987;MLEAC=4;MLEAF=0.500;MQ=24.96;MQ0=0;MQRankSum=-0.881;QD=4.61;ReadPosRankSum=-2.176;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,5:13:70:119,0,70 0/0:12,1:13:0:0,0,156 0/1:6,2:8:34:34,0,74 0/1:6,3:9:25:25,0,147 +chr7 94294085 . C G 46.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.283;DP=157;Dels=0.00;FS=69.021;HaplotypeScore=7.3962;MLEAC=3;MLEAF=0.375;MQ=34.87;MQ0=0;MQRankSum=-3.744;QD=0.39;ReadPosRankSum=2.073;SB=-1.335e+00 GT:AD:DP:GQ:PL 0/1:35,4:39:28:28,0,739 0/0:34,3:37:25:0,25,760 0/1:47,5:52:18:18,0,892 0/1:26,3:29:44:44,0,420 +chr7 94991620 . A C 55.16 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.188;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.2382;MLEAC=4;MLEAF=0.500;MQ=31.79;MQ0=0;MQRankSum=-1.608;QD=0.86;ReadPosRankSum=0.594;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:42:42,0,224 0/1:16,2:18:26:26,0,160 0/1:17,2:19:21:21,0,312 0/1:9,2:11:8:8,0,185 +chr7 95214887 rs75829735 A C 240.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.235;DB;DP=97;Dels=0.00;FS=4.944;HaplotypeScore=1.6997;MLEAC=4;MLEAF=0.500;MQ=26.88;MQ0=0;MQRankSum=-0.761;QD=2.48;ReadPosRankSum=0.063;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,5:20:99:115,0,151 0/1:19,5:24:56:56,0,312 0/1:30,4:34:26:26,0,466 0/1:13,6:19:86:86,0,142 +chr7 95214911 rs55879823 T C 598.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.568;DB;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.1649;MLEAC=3;MLEAF=0.375;MQ=30.09;MQ0=0;MQRankSum=1.212;QD=10.51;ReadPosRankSum=0.167;SB=-1.580e+02 GT:AD:DP:GQ:PL 0/1:10,7:17:99:211,0,149 0/0:23,0:23:60:0,60,715 0/1:13,9:22:99:279,0,152 0/1:11,7:18:99:152,0,206 +chr7 98591501 . A T 75.51 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.380;DP=10;Dels=0.00;FS=3.310;HaplotypeScore=1.2207;MLEAC=4;MLEAF=1.00;MQ=16.01;MQ0=0;MQRankSum=1.380;QD=12.59;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,2:4:6:49,6,0 1/1:0,2:2:6:61,6,0 ./. +chr7 98654974 . A T 319.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.842;DP=145;Dels=0.00;FS=118.897;HaplotypeScore=6.0981;MLEAC=4;MLEAF=0.500;MQ=34.91;MQ0=0;MQRankSum=-4.283;QD=2.20;ReadPosRankSum=0.847;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:24,5:29:88:88,0,634 0/1:40,6:46:74:74,0,930 0/1:37,6:43:51:51,0,814 0/1:20,7:27:99:149,0,535 +chr7 98771462 rs10499948 A G 661.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.698;DB;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=0.2492;MLEAC=3;MLEAF=0.375;MQ=36.36;MQ0=0;MQRankSum=-0.691;QD=7.70;ReadPosRankSum=-1.717;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,13:38:99:375,0,652 0/0:37,0:37:99:0,99,1314 0/1:27,11:38:99:272,0,686 0/1:7,2:9:58:58,0,214 +chr7 98800950 . T G 32 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.000;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=8.9393;MLEAC=2;MLEAF=0.500;MQ=19.45;MQ0=0;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.550;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,3:7:9:69,9,0 0/0:7,0:7:6:0,6,51 ./. ./. +chr7 98848752 rs6465745 T C 416.65 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.237;DB;DP=29;Dels=0.03;FS=16.298;HaplotypeScore=1.8860;MLEAC=7;MLEAF=0.875;MQ=20.91;MQ0=0;MQRankSum=3.071;QD=14.37;ReadPosRankSum=0.470;SB=-1.910e+01 GT:AD:DP:GQ:PL 1/1:2,3:5:6:59,6,0 0/1:2,5:7:18:79,0,18 1/1:2,8:10:21:189,21,0 1/1:2,4:6:12:133,12,0 +chr7 99022452 . G T 96.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.498;DP=77;Dels=0.00;FS=28.056;HaplotypeScore=6.7837;MLEAC=2;MLEAF=0.250;MQ=30.53;MQ0=0;MQRankSum=-2.229;QD=2.36;ReadPosRankSum=-1.533;SB=-1.079e+01 GT:AD:DP:GQ:PL 0/1:17,5:22:99:107,0,317 0/0:15,3:18:30:0,30,386 0/0:18,0:18:33:0,33,394 0/1:17,2:19:31:31,0,199 +chr7 99032769 . C A 72.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.449;DP=41;Dels=0.00;FS=2.599;HaplotypeScore=4.1343;MLEAC=3;MLEAF=0.375;MQ=22.89;MQ0=0;MQRankSum=1.110;QD=2.68;ReadPosRankSum=-2.150;SB=-8.385e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:14:14,0,44 0/0:14,0:14:15:0,15,119 0/1:7,4:11:86:86,0,90 0/1:8,2:10:15:15,0,120 +chr7 99042497 . A G 57.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.130;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=16.5214;MLEAC=2;MLEAF=0.250;MQ=21.25;MQ0=0;MQRankSum=-0.154;QD=1.69;ReadPosRankSum=-0.486;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,1:20:21:0,21,224 0/1:15,5:20:75:75,0,143 0/0:22,1:23:6:0,6,256 0/1:12,2:14:23:23,0,55 +chr7 99110117 . A T 41.44 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.513;DP=117;Dels=0.01;FS=19.897;HaplotypeScore=14.6227;MLEAC=2;MLEAF=0.250;MQ=23.94;MQ0=0;MQRankSum=-0.404;QD=0.78;ReadPosRankSum=-0.896;SB=-1.218e+00 GT:AD:DP:GQ:PL 0/0:31,1:32:13:0,13,309 0/1:25,3:29:13:13,0,347 0/0:29,1:31:17:0,17,435 0/1:19,4:24:69:69,0,164 +chr7 99489868 rs33998596 G C 420.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.796;DB;DP=215;Dels=0.00;FS=4.483;HaplotypeScore=5.1332;MLEAC=1;MLEAF=0.125;MQ=31.72;MQ0=0;MQRankSum=-3.470;QD=8.96;ReadPosRankSum=1.695;SB=-2.110e+02 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,141,1697 0/1:25,22:47:99:457,0,577 0/0:65,0:65:99:0,165,1980 0/0:49,0:49:99:0,111,1346 +chr7 99690665 . A T 202.06 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.660;DP=109;Dels=0.00;FS=30.117;HaplotypeScore=7.0729;MLEAC=3;MLEAF=0.375;MQ=34.29;MQ0=0;MQRankSum=-3.945;QD=2.49;ReadPosRankSum=0.283;SB=2.37 GT:AD:DP:GQ:PL 0/1:23,5:28:99:100,0,401 0/1:25,3:28:14:14,0,355 0/0:27,1:28:25:0,25,710 0/1:18,7:25:99:131,0,379 +chr7 99764614 . C T 55.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.771;DP=30;Dels=0.00;FS=5.902;HaplotypeScore=3.0835;MLEAC=3;MLEAF=0.375;MQ=23.63;MQ0=0;MQRankSum=1.176;QD=2.13;ReadPosRankSum=0.852;SB=1.51 GT:AD:DP:GQ:PL 0/1:4,1:6:20:27,0,20 0/1:10,1:11:24:24,0,48 0/1:7,2:9:47:47,0,86 0/0:4,0:4:9:0,9,98 +chr7 99786122 . C G 291.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.259;DP=258;Dels=0.01;FS=83.467;HaplotypeScore=5.5584;MLEAC=4;MLEAF=0.500;MQ=13.84;MQ0=0;MQRankSum=-1.313;QD=1.13;ReadPosRankSum=1.621;SB=0.070 GT:AD:DP:GQ:PL 0/1:60,7:67:8:8,0,218 0/1:52,20:72:99:142,0,123 0/1:64,21:85:62:128,0,62 0/1:24,8:32:33:55,0,33 +chr7 99955976 . A G 78.98 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.464;DP=81;Dels=0.02;FS=16.112;HaplotypeScore=13.8117;MLEAC=4;MLEAF=0.500;MQ=24.39;MQ0=0;MQRankSum=-0.287;QD=0.98;ReadPosRankSum=1.089;SB=-2.020e+00 GT:AD:DP:GQ:PL 0/1:12,2:14:14:14,0,139 0/1:17,4:21:71:71,0,173 0/1:22,2:24:33:33,0,202 0/1:17,3:20:1:1,0,240 +chr7 100175887 . G C 39.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.671;DP=61;Dels=0.03;FS=0.000;HaplotypeScore=10.2860;MLEAC=2;MLEAF=0.250;MQ=21.92;MQ0=0;MQRankSum=1.168;QD=1.17;ReadPosRankSum=0.845;SB=-1.333e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:38:38,0,78 0/0:15,0:15:12:0,12,114 0/1:16,3:19:43:43,0,187 0/0:11,0:11:12:0,12,96 +chr7 100205035 . A T 322.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.488;DP=120;Dels=0.03;FS=12.218;HaplotypeScore=5.9965;MLEAC=4;MLEAF=0.500;MQ=30.44;MQ0=0;MQRankSum=-1.382;QD=2.69;ReadPosRankSum=0.063;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,6:29:99:133,0,374 0/1:18,4:22:77:77,0,156 0/1:30,4:34:58:58,0,260 0/1:27,5:32:97:97,0,236 +chr7 100239207 . A G 45.97 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.727;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.8861;MLEAC=2;MLEAF=0.250;MQ=27.11;MQ0=0;MQRankSum=2.055;QD=2.00;ReadPosRankSum=0.285;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:6:0,6,61 0/0:11,0:11:6:0,6,64 0/1:6,2:8:26:39,0,26 0/1:13,2:15:47:47,0,161 +chr7 100244815 . C G 220.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.130;DP=119;Dels=0.01;FS=69.343;HaplotypeScore=6.8616;MLEAC=4;MLEAF=0.500;MQ=29.40;MQ0=0;MQRankSum=-2.659;QD=1.85;ReadPosRankSum=0.283;SB=-2.760e+00 GT:AD:DP:GQ:PL 0/1:28,3:31:27:27,0,640 0/1:27,5:32:70:70,0,514 0/1:26,6:32:76:76,0,407 0/1:16,7:23:90:90,0,200 +chr7 100283177 . G A 36.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.084;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.3587;MLEAC=2;MLEAF=0.250;MQ=20.72;MQ0=0;MQRankSum=0.099;QD=3.08;ReadPosRankSum=1.873;SB=16.93 GT:AD:DP:GQ:PL 1/1:2,2:5:3:36,3,0 0/0:6,0:6:12:0,12,107 0/0:4,0:4:6:0,6,56 0/1:4,3:7:43:43,0,48 +chr7 100304816 . G A 56.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.912;DP=115;Dels=0.00;FS=108.815;HaplotypeScore=1.8781;MLEAC=3;MLEAF=0.375;MQ=34.69;MQ0=0;MQRankSum=-1.700;QD=0.66;ReadPosRankSum=-0.993;SB=0.282 GT:AD:DP:GQ:PL 0/1:23,3:26:24:24,0,711 0/0:27,2:29:24:0,24,808 0/1:27,4:31:21:21,0,770 0/1:25,4:29:55:55,0,696 +chr7 100371384 . T A 181.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.555;DP=85;Dels=0.00;FS=59.281;HaplotypeScore=2.1806;MLEAC=4;MLEAF=0.500;MQ=34.36;MQ0=0;MQRankSum=-2.419;QD=2.14;ReadPosRankSum=0.645;SB=-8.571e-02 GT:AD:DP:GQ:PL 0/1:14,5:19:99:122,0,290 0/1:15,2:17:30:30,0,268 0/1:27,4:32:55:55,0,662 0/1:14,3:17:17:17,0,272 +chr7 100373271 rs540330 G T 1933.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.144;DB;DP=196;Dels=0.01;FS=0.000;HaplotypeScore=2.7724;MLEAC=4;MLEAF=0.500;MQ=34.14;MQ0=0;MQRankSum=-4.487;QD=9.87;ReadPosRankSum=0.204;SB=-4.980e+02 GT:AD:DP:GQ:PL 0/1:29,16:45:99:425,0,849 0/1:28,16:44:99:441,0,875 0/1:34,21:55:99:627,0,1046 0/1:29,21:50:99:483,0,798 +chr7 100385739 . A T 30.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.681;DP=159;Dels=0.00;FS=104.698;HaplotypeScore=1.7408;MLEAC=2;MLEAF=0.250;MQ=36.86;MQ0=0;MQRankSum=0.846;QD=0.44;ReadPosRankSum=3.079;SB=-1.780e+00 GT:AD:DP:GQ:PL 0/1:28,4:32:51:51,0,886 0/0:39,2:41:48:0,48,1070 0/0:49,0:49:99:0,129,1648 0/1:33,4:37:21:21,0,945 +chr7 100417816 . C T 127.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.973;DP=162;Dels=0.02;FS=19.016;HaplotypeScore=10.5816;MLEAC=3;MLEAF=0.375;MQ=31.15;MQ0=0;MQRankSum=-2.380;QD=1.08;ReadPosRankSum=-0.281;SB=0.026 GT:AD:DP:GQ:PL 0/1:35,4:39:19:19,0,870 0/1:34,8:42:99:134,0,920 0/0:41,2:43:31:0,31,941 0/1:32,3:35:17:17,0,646 +chr7 100463495 . T C 39.60 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.899;DP=70;Dels=0.00;FS=10.085;HaplotypeScore=5.0531;MLEAC=3;MLEAF=0.375;MQ=24.41;MQ0=0;MQRankSum=-1.295;QD=0.79;ReadPosRankSum=-1.432;SB=-3.168e-01 GT:AD:DP:GQ:PL 0/1:16,3:19:62:62,0,202 0/0:18,2:20:42:0,42,438 0/1:17,2:19:13:13,0,362 0/1:9,3:12:6:6,0,139 +chr7 100466160 . T G 160.36 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.207;DP=160;Dels=0.00;FS=3.304;HaplotypeScore=1.5197;MLEAC=3;MLEAF=0.375;MQ=36.14;MQ0=0;MQRankSum=-2.876;QD=2.23;ReadPosRankSum=-0.533;SB=-4.231e+00 GT:AD:DP:GQ:PL 0/0:36,4:40:0:0,0,1009 0/1:29,7:36:96:96,0,890 0/0:45,3:48:3:0,3,1198 0/1:31,5:36:99:102,0,743 +chr7 100470281 . C A 128.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.373;DP=139;Dels=0.01;FS=78.305;HaplotypeScore=8.1142;MLEAC=2;MLEAF=0.250;MQ=32.30;MQ0=0;MQRankSum=-2.710;QD=1.86;ReadPosRankSum=-0.277;SB=-6.742e-01 GT:AD:DP:GQ:PL 0/1:27,4:33:51:51,0,646 0/0:37,2:40:18:0,18,870 0/1:29,7:36:99:119,0,640 0/0:28,0:29:60:0,60,731 +chr7 100484917 rs6954151 C T 1128.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.833;DB;DP=185;Dels=0.02;FS=0.000;HaplotypeScore=2.4265;MLEAC=4;MLEAF=0.500;MQ=31.97;MQ0=0;MQRankSum=-1.352;QD=6.10;ReadPosRankSum=0.480;SB=-3.280e+02 GT:AD:DP:GQ:PL 0/1:28,13:41:99:363,0,547 0/1:34,12:46:99:270,0,717 0/1:28,13:41:99:274,0,728 0/1:42,11:53:99:264,0,1018 +chr7 100486611 . G C 268.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.509;DP=153;Dels=0.01;FS=65.280;HaplotypeScore=19.6954;MLEAC=4;MLEAF=0.500;MQ=29.45;MQ0=0;MQRankSum=-3.381;QD=1.75;ReadPosRankSum=3.286;SB=-4.433e-01 GT:AD:DP:GQ:PL 0/1:26,9:35:97:97,0,344 0/1:27,8:36:99:145,0,443 0/1:38,5:44:59:59,0,638 0/1:32,4:36:9:9,0,402 +chr7 100491191 . G A 38.15 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.297;DP=137;Dels=0.01;FS=32.569;HaplotypeScore=2.1920;MLEAC=3;MLEAF=0.375;MQ=33.25;MQ0=0;MQRankSum=-1.160;QD=0.38;ReadPosRankSum=0.912;SB=0.602 GT:AD:DP:GQ:PL 0/1:32,4:36:44:44,0,718 0/0:34,2:36:26:0,26,826 0/1:33,3:36:13:13,0,708 0/1:24,4:28:24:24,0,589 +chr7 100550799 rs28705341 G T 470.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.421;DB;DP=817;DS;Dels=0.03;FS=54.647;HaplotypeScore=59.4255;MLEAC=4;MLEAF=0.500;MQ=10.15;MQ0=0;MQRankSum=2.174;QD=0.58;ReadPosRankSum=-2.462;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:165,34:220:19:19,0,397 0/1:142,33:187:99:191,0,175 0/1:157,36:210:99:121,0,158 0/1:136,19:179:99:182,0,195 +chr7 100550952 rs74474298 C T 46.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.720;DB;DP=457;Dels=0.00;FS=0.000;HaplotypeScore=36.3535;MLEAC=2;MLEAF=0.250;MQ=15.23;MQ0=0;MQRankSum=2.433;QD=0.21;ReadPosRankSum=-0.352;SB=-1.043e+01 GT:AD:DP:GQ:PL 0/1:96,9:109:77:77,0,491 0/1:102,10:113:8:8,0,590 0/0:115,5:121:9:0,9,703 0/0:109,4:113:3:0,3,531 +chr7 100615377 rs147022488 AC A 350.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.434;DB;DP=79;FS=0.000;HaplotypeScore=55.5324;MLEAC=4;MLEAF=0.500;MQ=30.89;MQ0=0;MQRankSum=-3.445;QD=4.44;RPA=5,4;RU=C;ReadPosRankSum=0.479;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:9,7:15:99:189,0,256 0/1:16,1:13:5:5,0,342 0/1:19,7:25:99:163,0,507 0/1:13,4:14:44:44,0,303 +chr7 100637887 rs149317664 A G 49.53 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.430;DB;DP=107;Dels=0.00;FS=1.309;HaplotypeScore=1.9495;MLEAC=4;MLEAF=0.500;MQ=8.64;MQ0=0;MQRankSum=-0.096;QD=1.13;ReadPosRankSum=-0.469;SB=-1.984e+01 GT:AD:DP:GQ:PL 0/0:49,0:49:6:0,6,74 1/1:22,5:27:3:23,3,0 0/0:14,0:14:6:0,6,60 1/1:12,5:17:9:72,9,0 +chr7 100652314 . G C 173.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.707;DP=117;Dels=0.01;FS=2.380;HaplotypeScore=22.3548;MLEAC=4;MLEAF=0.500;MQ=29.78;MQ0=0;MQRankSum=-2.296;QD=1.87;ReadPosRankSum=0.637;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,3:24:1:0,1,438 0/1:32,3:35:40:40,0,494 0/1:23,7:30:99:123,0,473 0/1:23,4:27:51:51,0,357 +chr7 100663397 . G C 36.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.631;DP=62;Dels=0.00;FS=8.364;HaplotypeScore=1.3566;MLEAC=3;MLEAF=0.375;MQ=29.99;MQ0=0;MQRankSum=0.301;QD=0.75;ReadPosRankSum=-1.980;SB=-1.302e+01 GT:AD:DP:GQ:PL 0/0:13,0:13:15:0,15,164 0/1:12,2:14:33:33,0,122 0/1:16,1:17:5:5,0,177 0/1:16,2:18:40:40,0,163 +chr7 100675555 . G C 784.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.796;DP=338;Dels=0.00;FS=237.084;HaplotypeScore=15.5068;MLEAC=4;MLEAF=0.500;MQ=24.76;MQ0=0;MQRankSum=3.543;QD=2.32;ReadPosRankSum=3.831;SB=0.502 GT:AD:DP:GQ:PL 0/1:75,11:86:99:211,0,823 0/1:76,10:86:78:78,0,1139 0/1:78,14:92:99:298,0,866 0/1:61,13:74:99:240,0,765 +chr7 100780579 . A T 214.59 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.745;DP=49;Dels=0.02;FS=11.137;HaplotypeScore=4.8643;MLEAC=5;MLEAF=0.625;MQ=27.71;MQ0=0;MQRankSum=1.508;QD=4.38;ReadPosRankSum=3.227;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:50:50,0,123 0/1:7,5:12:99:139,0,116 0/1:9,3:12:41:41,0,85 1/1:6,1:7:3:27,3,0 +chr7 100839570 . T A 106.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.280;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.2244;MLEAC=3;MLEAF=0.375;MQ=31.63;MQ0=0;MQRankSum=0.790;QD=3.24;ReadPosRankSum=0.127;SB=-1.459e+01 GT:AD:DP:GQ:PL 0/1:10,2:12:39:39,0,131 0/1:10,2:12:41:41,0,162 0/1:6,3:9:68:68,0,106 0/0:6,0:6:3:0,3,27 +chr7 100933040 . T A 91.72 . AC=5;AF=0.625;AN=8;BaseQRankSum=-4.105;DP=107;Dels=0.00;FS=4.570;HaplotypeScore=5.2805;MLEAC=5;MLEAF=0.625;MQ=10.02;MQ0=0;MQRankSum=3.223;QD=0.86;ReadPosRankSum=-0.451;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,5:24:22:45,0,22 1/1:29,2:31:3:31,3,0 0/1:21,4:25:39:44,0,39 0/1:24,3:27:14:14,0,44 +chr7 101747575 rs201480 A G 3566.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=-1.062;DB;DP=152;Dels=0.01;FS=0.819;HaplotypeScore=0.9804;MLEAC=7;MLEAF=0.875;MQ=34.50;MQ0=0;MQRankSum=-0.102;QD=23.46;ReadPosRankSum=0.755;SB=-1.258e+03 GT:AD:DP:GQ:PL 0/1:31,17:48:99:428,0,788 1/1:4,35:39:55:1074,55,0 1/1:2,46:48:94:1564,94,0 1/1:0,16:16:42:500,42,0 +chr7 101844899 . T A 80.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.095;DP=143;Dels=0.00;FS=16.282;HaplotypeScore=12.1252;MLEAC=2;MLEAF=0.250;MQ=30.25;MQ0=0;MQRankSum=-4.766;QD=1.18;ReadPosRankSum=0.687;SB=0.157 GT:AD:DP:GQ:PL 0/1:22,6:28:33:33,0,376 0/0:29,3:32:30:0,30,643 0/0:41,2:43:66:0,66,1027 0/1:32,8:40:89:89,0,677 +chr7 101847720 . A T 56.84 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.119;DP=105;Dels=0.00;FS=13.005;HaplotypeScore=2.6956;MLEAC=4;MLEAF=0.500;MQ=25.40;MQ0=0;MQRankSum=0.813;QD=0.54;ReadPosRankSum=-0.407;SB=-1.094e+01 GT:AD:DP:GQ:PL 0/1:18,2:20:6:6,0,206 0/1:22,1:23:10:10,0,270 0/1:29,5:35:61:61,0,301 0/1:24,3:27:21:21,0,306 +chr7 101977827 . G T 61.35 . AC=5;AF=0.833;AN=6;BaseQRankSum=-2.652;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=4.53;MQ0=0;MQRankSum=3.358;QD=0.44;ReadPosRankSum=1.921;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:40,2:42:6:59,6,0 0/1:47,1:48:17:17,0,24 1/1:49,1:50:3:24,3,0 ./. +chr7 102574618 rs147093737 G A 148.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.696;DB;DP=92;Dels=0.01;FS=45.381;HaplotypeScore=3.9901;MLEAC=3;MLEAF=0.375;MQ=37.34;MQ0=0;MQRankSum=-1.303;QD=2.13;ReadPosRankSum=-0.590;SB=-3.699e+00 GT:AD:DP:GQ:PL 0/0:22,0:22:48:0,48,600 0/1:24,3:27:22:22,0,638 0/1:21,5:26:99:106,0,494 0/1:13,3:16:64:64,0,291 +chr7 102727009 . A T 313.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.789;DP=231;Dels=0.00;FS=4.307;HaplotypeScore=1.7365;MLEAC=3;MLEAF=0.375;MQ=25.84;MQ0=0;MQRankSum=3.289;QD=1.99;ReadPosRankSum=2.353;SB=-1.167e-02 GT:AD:DP:GQ:PL 0/1:77,4:81:59:59,0,649 0/0:73,0:73:63:0,63,697 0/1:52,9:61:99:207,0,428 0/1:13,3:16:91:91,0,93 +chr7 102978259 . C T 125.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.185;DP=156;Dels=0.02;FS=23.159;HaplotypeScore=2.8368;MLEAC=2;MLEAF=0.250;MQ=27.60;MQ0=0;MQRankSum=-0.935;QD=2.09;ReadPosRankSum=-1.397;SB=-1.714e+00 GT:AD:DP:GQ:PL 0/1:37,5:42:81:81,0,585 0/0:42,2:44:18:0,18,697 0/0:49,1:50:67:0,67,888 0/1:11,6:17:86:86,0,128 +chr7 103180913 . T C 830.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.533;DP=209;Dels=0.01;FS=7.225;HaplotypeScore=5.5873;MLEAC=4;MLEAF=0.500;MQ=33.56;MQ0=0;MQRankSum=-4.056;QD=3.97;ReadPosRankSum=5.292;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:42,9:51:99:191,0,833 0/1:32,10:42:99:142,0,636 0/1:51,10:61:99:212,0,791 0/1:38,14:52:99:328,0,603 +chr7 103183272 . T C 36.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.560;DP=192;Dels=0.00;FS=41.563;HaplotypeScore=2.4497;MLEAC=1;MLEAF=0.125;MQ=36.24;MQ0=0;MQRankSum=-3.855;QD=0.73;ReadPosRankSum=-2.215;SB=-5.124e+00 GT:AD:DP:GQ:PL 0/1:41,8:49:72:72,0,1206 0/0:55,4:59:18:0,18,1568 0/0:69,2:71:99:0,140,2027 0/0:13,0:13:27:0,27,308 +chr7 104782359 . G T 48.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.833;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.125;MQ=35.25;MQ0=0;MQRankSum=-2.851;QD=1.96;ReadPosRankSum=0.832;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,2:36:30:0,30,974 0/0:32,1:33:55:0,55,930 0/0:43,3:46:46:0,46,1140 0/1:19,6:25:85:85,0,455 +chr7 105148460 rs55700120 G T 142.30 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.047;DB;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.5519;MLEAC=2;MLEAF=0.333;MQ=35.49;MQ0=0;MQRankSum=1.309;QD=11.86;ReadPosRankSum=1.309;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,3:9:99:107,0,117 0/0:8,0:8:21:0,21,282 0/1:1,2:3:33:74,0,33 ./. +chr7 105649728 . G T 290.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.048;DP=65;Dels=0.05;FS=5.450;HaplotypeScore=3.7146;MLEAC=4;MLEAF=0.500;MQ=28.27;MQ0=0;MQRankSum=-1.972;QD=4.47;ReadPosRankSum=1.837;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,5:23:97:97,0,494 0/1:5,3:8:58:58,0,92 0/1:11,6:17:99:113,0,114 0/1:10,4:14:65:65,0,158 +chr7 105904094 . T G 398.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.268;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.9507;MLEAC=4;MLEAF=0.500;MQ=32.72;MQ0=0;MQRankSum=1.618;QD=3.56;ReadPosRankSum=1.859;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,7:33:99:176,0,325 0/1:26,5:32:99:100,0,466 0/1:33,6:39:78:78,0,615 0/1:5,3:8:18:87,0,18 +chr7 106508644 . A C 117.14 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.846;DP=156;Dels=0.00;FS=19.645;HaplotypeScore=7.0928;MLEAC=1;MLEAF=0.125;MQ=33.25;MQ0=0;MQRankSum=-4.271;QD=3.00;ReadPosRankSum=-0.038;SB=-4.381e+00 GT:AD:DP:GQ:PL 0/1:31,8:39:99:153,0,814 0/0:38,4:42:9:0,9,937 0/0:43,2:45:42:0,42,1086 0/0:29,1:30:42:0,42,524 +chr7 106768839 rs34736852 G GAC 270.47 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.437;DB;DP=24;FS=0.000;HaplotypeScore=2.7851;MLEAC=6;MLEAF=0.750;MQ=27.69;MQ0=0;MQRankSum=-1.381;QD=12.29;ReadPosRankSum=0.533;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:8,1:5:37:37,0,195 1/1:4,3:5:14:183,14,0 1/1:2,2:3:6:105,6,0 0/0:2,0:2:3:0,3,52 +chr7 107577456 rs56285692 T C 571.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.348;DB;DP=71;Dels=0.00;FS=15.789;HaplotypeScore=1.5874;MLEAC=3;MLEAF=0.375;MQ=25.92;MQ0=0;MQRankSum=3.101;QD=10.59;ReadPosRankSum=-1.779;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,0:17:36:0,36,428 0/1:17,7:24:99:215,0,181 0/1:11,9:20:70:275,0,70 0/1:6,4:10:40:125,0,40 +chr7 107643360 . C G 84.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.223;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=15.0508;MLEAC=4;MLEAF=0.500;MQ=26.37;MQ0=0;MQRankSum=-1.979;QD=0.89;ReadPosRankSum=-2.771;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:51:51,0,364 0/1:16,4:20:10:10,0,306 0/1:23,4:27:54:54,0,474 0/1:21,4:25:11:11,0,245 +chr7 107671458 . C T 74.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.652;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=2.3683;MLEAC=3;MLEAF=0.375;MQ=25.03;MQ0=0;MQRankSum=1.148;QD=2.25;ReadPosRankSum=0.532;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,2:7:41:41,0,77 0/1:13,2:15:32:62,0,32 0/1:10,1:11:13:13,0,110 0/0:10,1:11:6:0,6,53 +chr7 107677851 . A G 134.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.673;DP=100;Dels=0.04;FS=2.382;HaplotypeScore=24.5378;MLEAC=3;MLEAF=0.375;MQ=24.50;MQ0=0;MQRankSum=0.808;QD=2.41;ReadPosRankSum=-0.262;SB=-1.553e+00 GT:AD:DP:GQ:PL 0/0:25,2:27:0:0,0,228 0/1:26,3:29:58:82,0,58 0/1:20,4:24:92:92,0,177 0/0:16,0:16:21:0,21,206 +chr7 107718753 . AG A 454.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.244;DP=155;FS=95.573;HaplotypeScore=128.7040;MLEAC=3;MLEAF=0.375;MQ=27.09;MQ0=0;MQRankSum=0.346;QD=3.89;ReadPosRankSum=-3.118;SB=-1.256e+00 GT:AD:DP:GQ:PL 0/0:33,2:31:3:0,3,963 0/1:34,3:30:35:35,0,866 0/1:39,7:42:99:206,0,1007 0/1:20,8:23:99:264,0,461 +chr7 107720162 rs9690688 C A 313.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.317;DB;DP=155;Dels=0.00;FS=4.585;HaplotypeScore=2.1489;MLEAC=1;MLEAF=0.125;MQ=35.44;MQ0=0;MQRankSum=-1.714;QD=9.24;ReadPosRankSum=0.695;SB=-1.600e+02 GT:AD:DP:GQ:PL 0/1:22,12:34:99:350,0,484 0/0:37,0:37:84:0,84,1042 0/0:50,0:50:99:0,138,1764 0/0:34,0:34:87:0,87,1064 +chr7 107824889 rs401433 C G 1883.63 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.260;DB;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=5.0922;MLEAC=5;MLEAF=0.625;MQ=38.63;MQ0=0;MQRankSum=-1.281;QD=17.94;ReadPosRankSum=1.351;SB=-3.817e+02 GT:AD:DP:GQ:PL 0/1:17,13:30:99:454,0,480 1/1:2,19:22:22:684,22,0 0/1:12,17:29:99:571,0,371 0/1:16,7:23:99:220,0,522 +chr7 107834572 . T G 229.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.866;DP=145;Dels=0.00;FS=94.032;HaplotypeScore=4.0248;MLEAC=4;MLEAF=0.500;MQ=34.98;MQ0=0;MQRankSum=-2.980;QD=1.58;ReadPosRankSum=1.626;SB=-3.517e-02 GT:AD:DP:GQ:PL 0/1:38,4:42:38:38,0,1093 0/1:38,4:43:22:22,0,947 0/1:30,6:36:92:92,0,842 0/1:18,6:24:99:120,0,466 +chr7 107849908 rs1269621 G A 3433.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=-2.001;DB;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.2337;MLEAC=7;MLEAF=0.875;MQ=36.91;MQ0=0;MQRankSum=-7.131;QD=24.01;ReadPosRankSum=1.833;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:11,26:37:38:952,38,0 0/1:30,20:50:99:614,0,1040 1/1:3,43:46:99:1622,129,0 1/1:3,7:10:21:245,21,0 +chr7 111480798 . G A 31.15 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.828;DP=85;Dels=0.00;FS=61.597;HaplotypeScore=9.5170;MLEAC=3;MLEAF=0.375;MQ=30.41;MQ0=0;MQRankSum=-0.118;QD=0.53;ReadPosRankSum=0.518;SB=-1.405e+00 GT:AD:DP:GQ:PL 0/0:25,1:26:25:0,25,573 0/1:18,2:20:24:24,0,385 0/1:23,3:26:37:37,0,470 0/1:11,2:13:13:13,0,304 +chr7 114175551 . T A 49.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.162;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7413;MLEAC=2;MLEAF=0.250;MQ=35.42;MQ0=0;MQRankSum=-0.918;QD=0.83;ReadPosRankSum=-1.986;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,1:27:35:0,35,694 0/0:29,1:30:36:0,36,724 0/1:42,6:48:83:83,0,956 0/1:11,1:12:5:5,0,229 +chr7 115897242 rs2402059 T G 570 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.102;DB;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.2498;MLEAC=3;MLEAF=0.375;MQ=34.87;MQ0=0;MQRankSum=-2.253;QD=15.83;ReadPosRankSum=0.991;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:72:0,72,892 1/1:2,14:16:6:421,6,0 0/1:13,7:20:99:194,0,433 0/0:5,1:6:12:0,12,155 +chr7 116862260 rs193594 G A 40.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.783;DB;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.9833;MLEAC=3;MLEAF=0.375;MQ=26.07;MQ0=0;MQRankSum=-0.235;QD=4.48;ReadPosRankSum=2.115;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:27:0,27,320 1/1:1,2:3:3:37,3,0 0/1:4,2:6:27:45,0,27 0/0:2,1:3:3:0,3,32 +chr7 118591074 rs6958152 A G 642.23 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.834;DB;DP=39;Dels=0.00;FS=1.681;HaplotypeScore=0.1446;MLEAC=6;MLEAF=0.750;MQ=23.79;MQ0=0;MQRankSum=1.966;QD=16.47;ReadPosRankSum=0.798;SB=-3.147e+02 GT:AD:DP:GQ:PL 0/1:2,10:12:7:167,0,7 1/1:3,8:11:15:170,15,0 1/1:0,9:9:21:222,21,0 0/1:1,6:7:18:128,0,18 +chr7 119914751 . T C 32.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.812;DP=157;Dels=0.00;FS=27.630;HaplotypeScore=28.2872;MLEAC=1;MLEAF=0.125;MQ=28.46;MQ0=0;MQRankSum=-0.175;QD=0.87;ReadPosRankSum=-3.213;SB=-4.190e+00 GT:AD:DP:GQ:PL 0/0:41,1:43:56:0,56,886 0/0:38,1:39:31:0,31,697 0/0:36,2:38:17:0,17,698 0/1:33,4:37:68:68,0,498 +chr7 120979415 . T G 449.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.803;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4856;MLEAC=4;MLEAF=0.500;MQ=35.73;MQ0=0;MQRankSum=0.448;QD=5.35;ReadPosRankSum=0.036;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:54:54,0,291 0/1:16,7:23:99:194,0,236 0/1:21,3:24:48:48,0,381 0/1:11,7:19:99:196,0,164 +chr7 122000867 . G A 142.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.101;DP=67;Dels=0.03;FS=57.916;HaplotypeScore=11.4337;MLEAC=3;MLEAF=0.375;MQ=25.16;MQ0=0;MQRankSum=-0.708;QD=2.27;ReadPosRankSum=0.567;SB=3.95 GT:AD:DP:GQ:PL 0/1:14,3:17:44:44,0,265 0/1:20,4:24:52:52,0,242 0/1:15,5:20:89:89,0,265 0/0:3,1:4:6:0,6,59 +chr7 122054228 . T A 110.18 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.400;DP=216;Dels=0.01;FS=0.000;HaplotypeScore=3.0540;MLEAC=1;MLEAF=0.125;MQ=35.38;MQ0=0;MQRankSum=-0.818;QD=1.72;ReadPosRankSum=1.165;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:55,9:64:99:146,0,1208 0/0:59,3:62:32:0,32,1622 0/0:61,5:66:45:0,45,1537 0/0:21,1:22:8:0,8,369 +chr7 122774671 . T G 42.62 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.035;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=1.6844;MLEAC=2;MLEAF=0.250;MQ=28.91;MQ0=0;MQRankSum=-0.059;QD=2.13;ReadPosRankSum=-0.059;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,1:19:1:0,1,229 0/0:23,1:25:0:0,0,255 0/0:16,2:18:1:0,1,271 0/1:17,3:20:75:75,0,146 +chr7 123508466 . C A 79.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.288;DP=227;Dels=0.00;FS=23.886;HaplotypeScore=22.2444;MLEAC=2;MLEAF=0.250;MQ=32.85;MQ0=0;MQRankSum=-3.913;QD=0.63;ReadPosRankSum=1.048;SB=0.312 GT:AD:DP:GQ:PL 0/0:73,5:80:71:0,71,1726 0/1:48,6:54:73:73,0,800 0/1:63,7:73:48:48,0,1245 0/0:18,1:19:14:0,14,413 +chr7 123516943 rs139736892 G A 2136.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.014;DB;DP=181;Dels=0.00;FS=1.899;HaplotypeScore=1.2376;MLEAC=3;MLEAF=0.375;MQ=33.95;MQ0=0;MQRankSum=-1.450;QD=16.44;ReadPosRankSum=1.398;SB=-1.041e+03 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,144,1763 0/1:24,27:51:99:792,0,559 0/1:20,20:40:99:637,0,498 0/1:14,25:39:99:751,0,269 +chr7 124116738 rs112656682 T G 532.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.860;DB;DP=150;Dels=0.00;FS=57.705;HaplotypeScore=26.6826;MLEAC=4;MLEAF=0.500;MQ=21.96;MQ0=0;MQRankSum=1.225;QD=3.55;ReadPosRankSum=2.069;SB=-3.475e+01 GT:AD:DP:GQ:PL 0/1:24,7:32:99:117,0,215 0/1:36,14:50:99:206,0,363 0/1:29,11:40:99:185,0,248 0/1:24,4:28:67:67,0,109 +chr7 126882703 . T C 43.97 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.331;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=9.0166;MLEAC=1;MLEAF=0.125;MQ=27.51;MQ0=0;MQRankSum=-0.803;QD=2.31;ReadPosRankSum=-0.520;SB=12.96 GT:AD:DP:GQ:PL 0/0:14,0:16:9:0,9,102 0/0:15,0:15:3:0,3,42 0/1:16,3:19:79:79,0,157 0/0:11,1:12:9:0,9,75 +chr7 127292477 . C G 37.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.720;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.3650;MLEAC=4;MLEAF=1.00;MQ=19.30;MQ0=0;MQRankSum=1.380;QD=5.29;ReadPosRankSum=-0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:3,1:4:3:38,3,0 1/1:2,1:3:3:32,3,0 +chr7 127714679 . A G 50.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.422;DP=61;Dels=0.02;FS=23.817;HaplotypeScore=5.5965;MLEAC=3;MLEAF=0.375;MQ=31.57;MQ0=0;MQRankSum=-1.023;QD=1.10;ReadPosRankSum=-0.816;SB=-1.752e+00 GT:AD:DP:GQ:PL 0/1:17,3:20:53:53,0,322 0/0:14,1:15:4:0,4,285 0/1:8,3:11:31:31,0,134 0/1:13,1:14:7:7,0,236 +chr7 127977304 rs11496082 C T 383.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.636;DB;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.2316;MLEAC=1;MLEAF=0.125;MQ=35.45;MQ0=0;MQRankSum=-2.939;QD=9.37;ReadPosRankSum=-0.134;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,16:41:99:420,0,821 0/0:28,0:28:84:0,84,1071 0/0:27,0:27:78:0,78,1029 0/0:33,0:33:90:0,90,1086 +chr7 128049587 . C A 398.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.162;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=14.1008;MLEAC=4;MLEAF=0.500;MQ=27.79;MQ0=0;MQRankSum=-2.099;QD=3.29;ReadPosRankSum=0.986;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,6:25:95:95,0,456 0/1:24,6:30:91:91,0,261 0/1:20,11:31:99:234,0,222 0/1:28,4:32:21:21,0,482 +chr7 128096678 rs2732394 T C 1738.71 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.303;DB;DP=102;Dels=0.00;FS=12.430;HaplotypeScore=1.0849;MLEAC=6;MLEAF=0.750;MQ=36.31;MQ0=0;MQRankSum=-1.034;QD=17.05;ReadPosRankSum=2.551;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:23,9:32:99:255,0,837 0/1:19,4:23:89:89,0,595 1/1:3,26:29:78:1016,78,0 1/1:6,12:18:7:424,7,0 +chr7 128117125 . G T 56.93 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.746;DP=66;Dels=0.03;FS=0.000;HaplotypeScore=4.1203;MLEAC=2;MLEAF=0.333;MQ=12.91;MQ0=0;MQRankSum=0.746;QD=3.56;ReadPosRankSum=-1.276;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,1:16:3:0,3,32 0/0:14,1:15:6:0,6,58 ./. 1/1:7,8:15:9:96,9,0 +chr7 128371206 rs339066 G A 438.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.696;DB;DP=156;Dels=0.01;FS=0.000;HaplotypeScore=1.4677;MLEAC=1;MLEAF=0.125;MQ=38.73;MQ0=0;MQRankSum=-0.820;QD=10.45;ReadPosRankSum=0.283;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,108,1386 0/1:27,15:42:99:475,0,790 0/0:47,1:48:99:0,105,1849 0/0:27,0:27:81:0,81,1052 +chr7 128407645 . C T 638.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.770;DP=174;Dels=0.01;FS=98.216;HaplotypeScore=10.1045;MLEAC=4;MLEAF=0.500;MQ=30.93;MQ0=0;MQRankSum=-6.159;QD=3.67;ReadPosRankSum=3.620;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,10:40:99:130,0,697 0/1:32,8:40:99:165,0,660 0/1:46,13:59:99:219,0,1094 0/1:23,10:33:99:167,0,480 +chr7 128446826 . C T 163.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.323;DP=78;Dels=0.00;FS=28.075;HaplotypeScore=8.5221;MLEAC=4;MLEAF=0.500;MQ=26.52;MQ0=0;MQRankSum=2.010;QD=2.10;ReadPosRankSum=1.748;SB=-1.255e+00 GT:AD:DP:GQ:PL 0/1:11,2:13:43:58,0,43 0/1:20,3:23:54:54,0,212 0/1:23,3:26:51:51,0,296 0/1:13,2:16:43:43,0,160 +chr7 128475520 . C G 94.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.690;DP=103;Dels=0.03;FS=4.762;HaplotypeScore=22.4780;MLEAC=3;MLEAF=0.375;MQ=23.40;MQ0=0;MQRankSum=0.308;QD=1.17;ReadPosRankSum=2.070;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,2:22:21:0,21,240 0/1:18,3:21:28:28,0,193 0/1:23,2:25:5:5,0,155 0/1:27,5:32:99:103,0,250 +chr7 128478844 . C G 60.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.175;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.2433;MLEAC=3;MLEAF=0.375;MQ=21.55;MQ0=0;MQRankSum=2.470;QD=1.14;ReadPosRankSum=-2.200;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:25:25,0,39 0/0:19,0:19:21:0,21,195 0/1:17,1:18:6:6,0,191 0/1:16,4:20:71:71,0,103 +chr7 128481141 . C T 88.74 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.726;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=3.8794;MLEAC=4;MLEAF=0.500;MQ=23.05;MQ0=0;MQRankSum=2.768;QD=1.89;ReadPosRankSum=-0.681;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:58:58,0,72 0/1:10,2:12:40:40,0,171 0/1:10,1:11:16:16,0,127 0/1:10,1:11:17:17,0,80 +chr7 128484048 . C A 79.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.706;DP=74;Dels=0.04;FS=54.051;HaplotypeScore=14.1702;MLEAC=3;MLEAF=0.375;MQ=31.50;MQ0=0;MQRankSum=-1.671;QD=1.57;ReadPosRankSum=-2.087;SB=-1.351e+00 GT:AD:DP:GQ:PL 0/1:13,3:16:59:59,0,378 0/0:19,2:21:18:0,18,539 0/1:15,3:18:43:43,0,378 0/1:14,2:16:21:21,0,309 +chr7 128484668 . A G 30.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.026;DP=68;Dels=0.01;FS=27.132;HaplotypeScore=3.7219;MLEAC=3;MLEAF=0.375;MQ=30.61;MQ0=0;MQRankSum=-2.845;QD=0.61;ReadPosRankSum=0.919;SB=-2.312e+00 GT:AD:DP:GQ:PL 0/1:12,1:13:3:3,0,233 0/0:17,0:17:39:0,39,489 0/1:17,3:20:23:23,0,466 0/1:13,4:17:45:45,0,201 +chr7 128495187 . G C 55.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.092;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=9.6297;MLEAC=2;MLEAF=0.250;MQ=25.94;MQ0=0;MQRankSum=0.763;QD=1.92;ReadPosRankSum=-1.190;SB=0.033 GT:AD:DP:GQ:PL 0/1:13,2:15:54:54,0,100 0/0:17,0:17:18:0,18,182 0/0:19,0:19:21:0,21,196 0/1:11,2:14:43:43,0,63 +chr7 128497252 . G A 59.20 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.925;DP=185;Dels=0.00;FS=6.643;HaplotypeScore=4.0257;MLEAC=2;MLEAF=0.250;MQ=17.44;MQ0=0;MQRankSum=2.588;QD=1.32;ReadPosRankSum=-2.474;SB=-2.266e+00 GT:AD:DP:GQ:PL 0/0:44,1:45:33:0,33,339 0/0:47,2:49:0:0,0,265 0/0:45,1:46:1:0,1,281 0/1:37,8:45:93:93,0,129 +chr7 128785008 rs13243618 C T 40.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=22.58;MQ0=0;MQRankSum=0.736;QD=13.34;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:36,3,0 1/1:1,1:2:3:37,3,0 ./. +chr7 128806551 . G T 121.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.533;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=0.250;MQ=35.80;MQ0=0;MQRankSum=-1.498;QD=2.43;ReadPosRankSum=1.786;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,5:25:99:111,0,484 0/0:25,1:26:21:0,21,464 0/0:28,0:28:48:0,48,534 0/1:23,2:25:52:52,0,252 +chr7 129348769 . A T 57.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.525;DP=88;Dels=0.02;FS=0.000;HaplotypeScore=37.8647;MLEAC=3;MLEAF=0.375;MQ=18.25;MQ0=0;MQRankSum=-0.766;QD=0.91;ReadPosRankSum=-0.314;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:30:30,0,108 0/1:29,1:30:7:7,0,122 0/0:21,2:23:24:0,24,193 0/1:6,5:11:53:63,0,53 +chr7 129519365 . G A 30.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.215;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.3010;MLEAC=3;MLEAF=0.375;MQ=29.79;MQ0=0;MQRankSum=-2.074;QD=0.28;ReadPosRankSum=1.680;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,3:35:31:31,0,575 0/1:27,4:31:30:30,0,505 0/1:39,3:42:12:12,0,680 0/0:10,2:13:12:0,12,131 +chr7 129588837 . C G 230.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.524;DP=160;Dels=0.00;FS=119.277;HaplotypeScore=4.6583;MLEAC=3;MLEAF=0.375;MQ=35.61;MQ0=0;MQRankSum=-4.725;QD=1.85;ReadPosRankSum=0.360;SB=0.726 GT:AD:DP:GQ:PL 0/1:33,4:37:27:27,0,976 0/1:28,6:34:72:72,0,879 0/1:44,10:54:99:175,0,1097 0/0:32,3:35:21:0,21,992 +chr7 129929585 . T A 621.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.235;DP=166;Dels=0.00;FS=11.726;HaplotypeScore=1.6379;MLEAC=4;MLEAF=0.500;MQ=38.27;MQ0=0;MQRankSum=-4.495;QD=3.74;ReadPosRankSum=3.269;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,9:41:99:205,0,822 0/1:40,6:47:97:97,0,790 0/1:33,6:39:99:137,0,658 0/1:30,9:39:99:225,0,531 +chr7 129950710 . G C 57.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.791;DP=187;Dels=0.02;FS=11.407;HaplotypeScore=20.3777;MLEAC=2;MLEAF=0.250;MQ=30.17;MQ0=0;MQRankSum=-1.914;QD=0.64;ReadPosRankSum=-1.308;SB=0.780 GT:AD:DP:GQ:PL 0/0:43,4:49:5:0,5,719 0/0:41,1:45:44:0,44,780 0/1:53,4:59:26:26,0,897 0/1:25,5:30:72:72,0,416 +chr7 130039895 . G A 43.13 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.566;DP=124;Dels=0.00;FS=28.372;HaplotypeScore=3.6074;MLEAC=1;MLEAF=0.125;MQ=30.94;MQ0=0;MQRankSum=-1.883;QD=2.40;ReadPosRankSum=2.362;SB=-6.403e+00 GT:AD:DP:GQ:PL 0/0:31,2:33:13:0,13,796 0/0:29,2:31:12:0,12,677 0/0:40,2:42:31:0,31,992 0/1:14,4:18:79:79,0,271 +chr7 130148507 rs2072575 G A 1322.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.391;DB;DP=154;Dels=0.00;FS=36.477;HaplotypeScore=2.3574;MLEAC=4;MLEAF=0.500;MQ=35.29;MQ0=0;MQRankSum=-1.387;QD=8.59;ReadPosRankSum=0.887;SB=-7.012e+00 GT:AD:DP:GQ:PL 0/1:19,8:27:99:177,0,500 0/1:26,16:42:99:435,0,733 0/1:38,11:49:99:286,0,1250 0/1:20,16:36:99:467,0,482 +chr7 130151248 . G C 79.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.480;DP=105;Dels=0.00;FS=4.662;HaplotypeScore=4.3623;MLEAC=2;MLEAF=0.250;MQ=33.98;MQ0=0;MQRankSum=-1.480;QD=1.59;ReadPosRankSum=0.654;SB=0.011 GT:AD:DP:GQ:PL 0/1:22,4:26:46:46,0,547 0/0:29,1:31:36:0,36,681 0/0:24,0:24:45:0,45,524 0/1:20,4:24:75:75,0,353 +chr7 130151271 . A C 131.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.544;DP=126;Dels=0.00;FS=38.301;HaplotypeScore=2.2179;MLEAC=3;MLEAF=0.375;MQ=37.39;MQ0=0;MQRankSum=-4.287;QD=1.38;ReadPosRankSum=-2.228;SB=-1.659e+00 GT:AD:DP:GQ:PL 0/1:29,3:32:4:4,0,807 0/1:36,4:40:30:30,0,891 0/0:28,3:31:10:0,10,746 0/1:17,6:23:99:138,0,495 +chr7 130295700 rs56232567 G A 35.30 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.658;DB;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=2.9079;MLEAC=1;MLEAF=0.125;MQ=32.03;MQ0=0;MQRankSum=-0.971;QD=3.53;ReadPosRankSum=0.470;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,3:9:71:71,0,193 0/0:10,0:10:24:0,24,305 0/0:14,0:14:27:0,27,343 0/0:3,0:3:6:0,6,80 +chr7 130528404 . C G 206.44 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.304;DP=27;Dels=0.00;FS=3.197;HaplotypeScore=4.9132;MLEAC=5;MLEAF=0.625;MQ=27.12;MQ0=0;MQRankSum=1.368;QD=7.65;ReadPosRankSum=2.507;SB=-6.604e-01 GT:AD:DP:GQ:PL 0/1:4,3:7:32:90,0,32 1/1:3,2:5:6:64,6,0 0/1:5,2:7:15:52,0,15 0/1:6,2:8:44:44,0,103 +chr7 130927510 rs13233476 A G 139.11 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.660;DB;DP=66;Dels=0.02;FS=34.272;HaplotypeScore=4.3018;MLEAC=4;MLEAF=1.00;MQ=12.27;MQ0=0;MQRankSum=2.301;QD=4.09;ReadPosRankSum=0.728;SB=-3.236e+01 GT:AD:DP:GQ:PL 1/1:11,6:17:6:68,6,0 ./. 1/1:5,11:16:9:106,9,0 ./. +chr7 131191560 . C G 61.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.525;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7407;MLEAC=2;MLEAF=0.250;MQ=31.16;MQ0=0;MQRankSum=-2.226;QD=1.91;ReadPosRankSum=2.226;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:42:0,42,497 0/0:12,1:14:6:0,6,334 0/1:17,4:21:68:68,0,166 0/1:9,2:11:34:34,0,123 +chr7 131195712 rs12670788 G A 2246.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.135;DB;DP=196;Dels=0.01;FS=4.113;HaplotypeScore=4.8805;MLEAC=6;MLEAF=0.750;MQ=36.01;MQ0=0;MQRankSum=-5.546;QD=11.46;ReadPosRankSum=1.538;SB=-9.420e+02 GT:AD:DP:GQ:PL 0/1:52,18:70:99:498,0,1210 0/1:42,11:53:99:236,0,1077 1/1:16,27:43:46:941,46,0 1/1:11,17:28:51:618,51,0 +chr7 131555535 rs8180783 C T 102.76 . AC=4;AF=1.00;AN=4;DB;DP=5;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=27.33;MQ0=0;QD=25.69;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,3:3:9:102,9,0 ./. 1/1:0,1:1:3:35,3,0 +chr7 131853036 . G T 142.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.937;DP=42;Dels=0.00;FS=7.900;HaplotypeScore=2.3953;MLEAC=4;MLEAF=0.500;MQ=27.61;MQ0=0;MQRankSum=-0.820;QD=3.40;ReadPosRankSum=2.108;SB=-4.416e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:21:21,0,90 0/1:6,4:10:73:73,0,130 0/1:8,3:11:71:71,0,144 0/1:8,1:9:20:20,0,100 +chr7 132854888 . T G 32.03 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.340;DP=92;Dels=0.02;FS=12.532;HaplotypeScore=1.7959;MLEAC=2;MLEAF=0.250;MQ=13.98;MQ0=0;MQRankSum=2.995;QD=0.78;ReadPosRankSum=-2.746;SB=1.70 GT:AD:DP:GQ:PL 0/0:25,0:25:18:0,18,179 0/1:24,2:26:16:49,0,16 0/0:25,1:26:9:0,9,83 0/1:11,2:13:21:24,0,21 +chr7 133979775 . A T 170.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.792;DP=334;Dels=0.00;FS=166.380;HaplotypeScore=18.8187;MLEAC=2;MLEAF=0.250;MQ=32.96;MQ0=0;MQRankSum=1.211;QD=1.19;ReadPosRankSum=-0.034;SB=-9.821e-01 GT:AD:DP:GQ:PL 0/1:54,7:61:99:120,0,1197 0/0:85,6:92:34:0,34,2272 0/0:94,5:99:87:0,87,2605 0/1:74,8:82:92:92,0,1604 +chr7 134613549 . G A 64.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.321;DP=57;Dels=0.02;FS=2.427;HaplotypeScore=4.0312;MLEAC=2;MLEAF=0.250;MQ=25.39;MQ0=0;MQRankSum=0.017;QD=2.31;ReadPosRankSum=1.953;SB=4.109e-03 GT:AD:DP:GQ:PL 0/0:12,0:12:27:0,27,287 0/0:17,0:17:33:0,33,352 0/1:14,4:18:73:73,0,225 0/1:7,2:9:33:33,0,69 +chr7 134618710 rs6973420 A G 516.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.348;DB;DP=157;Dels=0.00;FS=14.971;HaplotypeScore=1.4955;MLEAC=2;MLEAF=0.250;MQ=35.04;MQ0=0;MQRankSum=-1.265;QD=6.80;ReadPosRankSum=0.615;SB=-1.910e+02 GT:AD:DP:GQ:PL 0/1:30,11:41:99:297,0,814 0/1:24,11:35:99:261,0,707 0/0:55,0:55:99:0,150,1895 0/0:26,0:26:72:0,72,899 +chr7 134877935 rs292573 A G 694.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.997;DB;DP=97;Dels=0.00;FS=23.899;HaplotypeScore=4.6687;MLEAC=4;MLEAF=0.500;MQ=30.43;MQ0=0;MQRankSum=-0.438;QD=7.16;ReadPosRankSum=0.956;SB=-3.369e+02 GT:AD:DP:GQ:PL 0/1:20,3:25:45:45,0,438 0/1:13,12:25:99:373,0,230 0/1:20,8:28:99:223,0,365 0/1:15,4:19:96:96,0,297 +chr7 135048497 rs2840185 C T 761.35 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.444;DB;DP=26;Dels=0.00;FS=9.031;HaplotypeScore=1.1673;MLEAC=8;MLEAF=1.00;MQ=34.95;MQ0=0;MQRankSum=2.706;QD=29.28;ReadPosRankSum=0.611;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,6:8:18:253,18,0 1/1:1,5:6:15:181,15,0 1/1:0,8:8:24:296,24,0 1/1:2,2:4:6:70,6,0 +chr7 135099048 . A G 35.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.998;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=27.5009;MLEAC=3;MLEAF=0.375;MQ=21.83;MQ0=0;MQRankSum=0.093;QD=0.40;ReadPosRankSum=-0.834;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,3:31:11:11,0,119 0/1:22,3:25:44:44,0,68 0/1:31,3:34:23:23,0,187 0/0:7,1:8:12:0,12,107 +chr7 135406090 rs111446040 T C 131.80 . AC=7;AF=0.875;AN=8;BaseQRankSum=-1.068;DB;DP=37;Dels=0.00;FS=13.365;HaplotypeScore=3.8366;MLEAC=7;MLEAF=0.875;MQ=21.67;MQ0=0;MQRankSum=2.137;QD=3.56;ReadPosRankSum=0.467;SB=4.49 GT:AD:DP:GQ:PL 0/1:6,2:8:18:18,0,47 1/1:8,2:10:3:33,3,0 1/1:8,3:11:9:99,9,0 1/1:6,2:8:3:23,3,0 +chr7 135482664 rs189121663 G T 120.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.704;DB;DP=66;Dels=0.00;FS=2.556;HaplotypeScore=8.1590;MLEAC=3;MLEAF=0.375;MQ=27.18;MQ0=0;MQRankSum=0.057;QD=2.57;ReadPosRankSum=-1.008;SB=-1.385e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:66:66,0,201 0/0:19,0:19:18:0,18,187 0/1:15,2:17:32:32,0,112 0/1:12,3:15:66:66,0,89 +chr7 135929205 . G A 64.05 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.267;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=8.1530;MLEAC=7;MLEAF=0.875;MQ=15.62;MQ0=0;MQRankSum=2.000;QD=2.67;ReadPosRankSum=-1.200;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,2:7:3:31,3,0 0/1:5,1:6:21:21,0,41 1/1:5,1:6:3:22,3,0 1/1:4,1:5:3:30,3,0 +chr7 136588109 rs6963819 G A 758.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.830;DB;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=1.0219;MLEAC=3;MLEAF=0.375;MQ=32.36;MQ0=0;MQRankSum=-0.067;QD=11.33;ReadPosRankSum=-0.368;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,8:18:99:257,0,232 0/0:31,0:31:72:0,72,850 0/1:22,10:32:99:266,0,653 0/1:7,9:16:99:279,0,187 +chr7 136939680 . G A 91.26 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.993;DP=178;Dels=0.01;FS=25.069;HaplotypeScore=9.4988;MLEAC=1;MLEAF=0.125;MQ=31.43;MQ0=0;MQRankSum=-0.697;QD=1.83;ReadPosRankSum=-0.143;SB=-7.331e+00 GT:AD:DP:GQ:PL 0/0:53,2:55:17:0,17,804 0/0:43,3:46:7:0,7,608 0/1:44,6:50:99:127,0,589 0/0:24,1:25:24:0,24,245 +chr7 137647262 rs274009 T C 130.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.184;DB;DP=15;Dels=0.00;FS=6.368;HaplotypeScore=0.1446;MLEAC=4;MLEAF=0.500;MQ=32.29;MQ0=0;MQRankSum=0.306;QD=13.06;ReadPosRankSum=1.286;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:12:0,12,167 1/1:2,2:4:6:75,6,0 0/1:2,2:4:28:74,0,28 0/1:1,1:2:27:27,0,35 +chr7 138126727 . A T 136.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.590;DP=106;Dels=0.00;FS=36.147;HaplotypeScore=3.5963;MLEAC=4;MLEAF=0.500;MQ=25.10;MQ0=0;MQRankSum=2.437;QD=1.28;ReadPosRankSum=1.070;SB=-1.501e+00 GT:AD:DP:GQ:PL 0/1:18,5:23:81:81,0,225 0/1:24,3:27:60:60,0,292 0/1:30,2:32:3:3,0,348 0/1:22,2:24:33:33,0,254 +chr7 138143628 rs10279876 T C 73.98 . AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.00;FS=3.332;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=0;QD=24.66;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:9:106,9,0 ./. ./. ./. +chr7 138312973 . G C 160.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.533;DP=203;Dels=0.00;FS=119.870;HaplotypeScore=5.8843;MLEAC=3;MLEAF=0.375;MQ=35.06;MQ0=0;MQRankSum=-4.430;QD=1.03;ReadPosRankSum=1.274;SB=0.098 GT:AD:DP:GQ:PL 0/1:42,8:50:99:110,0,1249 0/0:42,4:47:14:0,14,1285 0/1:53,6:59:11:11,0,1412 0/1:41,6:47:82:82,0,924 +chr7 138597036 rs3735013 A G 277.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.251;DB;DP=108;Dels=0.01;FS=4.159;HaplotypeScore=3.0927;MLEAC=1;MLEAF=0.125;MQ=29.09;MQ0=0;MQRankSum=0.495;QD=11.12;ReadPosRankSum=1.373;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:13,11:24:99:314,0,222 0/0:30,0:30:72:0,72,816 0/0:29,0:29:63:0,63,706 0/0:24,0:24:45:0,45,482 +chr7 138603551 . G T 442.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.548;DP=161;Dels=0.01;FS=25.509;HaplotypeScore=7.0048;MLEAC=4;MLEAF=0.500;MQ=32.35;MQ0=0;MQRankSum=-3.702;QD=2.75;ReadPosRankSum=3.912;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:28,7:35:99:118,0,648 0/1:40,10:50:99:188,0,688 0/1:34,6:40:66:66,0,725 0/1:28,7:35:99:113,0,618 +chr7 138719320 . A C 173.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.408;DP=174;Dels=0.00;FS=92.559;HaplotypeScore=2.1460;MLEAC=2;MLEAF=0.250;MQ=33.49;MQ0=0;MQRankSum=-2.426;QD=1.91;ReadPosRankSum=1.266;SB=-1.491e+00 GT:AD:DP:GQ:PL 0/1:36,4:40:40:40,0,879 0/1:41,10:51:99:175,0,1165 0/0:51,1:52:90:0,90,1325 0/0:28,3:31:14:0,14,733 +chr7 139416939 rs10278124 C G 117.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.215;DB;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=37.22;MQ0=0;MQRankSum=-1.726;QD=6.21;ReadPosRankSum=-0.484;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,6:19:99:154,0,370 0/0:25,0:25:60:0,60,829 0/0:23,0:23:66:0,66,904 0/0:13,0:13:36:0,36,464 +chr7 139612903 . T A 85.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.637;DP=151;Dels=0.00;FS=33.092;HaplotypeScore=4.6565;MLEAC=3;MLEAF=0.375;MQ=33.75;MQ0=0;MQRankSum=-1.355;QD=0.86;ReadPosRankSum=1.043;SB=0.554 GT:AD:DP:GQ:PL 0/1:28,3:31:3:3,0,549 0/1:32,4:36:74:74,0,533 0/0:50,2:52:62:0,62,1212 0/1:28,4:32:49:49,0,642 +chr7 139801777 rs1062277 T G 2577.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.569;DB;DP=203;Dels=0.00;FS=2.222;HaplotypeScore=0.2474;MLEAC=4;MLEAF=0.500;MQ=38.80;MQ0=0;MQRankSum=1.642;QD=12.70;ReadPosRankSum=1.662;SB=-4.750e+02 GT:AD:DP:GQ:PL 0/1:38,20:58:99:657,0,1203 0/1:28,21:49:99:717,0,938 0/1:34,22:56:99:753,0,1143 0/1:24,16:40:99:493,0,735 +chr7 140389364 . C G 40.91 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.673;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9929;MLEAC=2;MLEAF=0.250;MQ=37.07;MQ0=0;MQRankSum=-1.915;QD=1.17;ReadPosRankSum=-0.086;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,0:17:33:0,33,388 0/1:19,3:22:72:72,0,341 0/0:18,1:19:7:0,7,308 0/1:12,1:13:8:8,0,203 +chr7 140706375 . A G 123.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.832;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1653;MLEAC=2;MLEAF=0.250;MQ=31.81;MQ0=0;MQRankSum=-0.455;QD=3.17;ReadPosRankSum=1.126;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,5:29:87:87,0,521 0/0:30,1:31:37:0,37,636 0/0:27,0:27:48:0,48,496 0/1:6,4:10:67:78,0,67 +chr7 140774467 rs477223 C G 31.23 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.720;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=3.6953;MLEAC=2;MLEAF=0.333;MQ=21.73;MQ0=0;MQRankSum=1.380;QD=10.41;ReadPosRankSum=0.720;SB=-2.322e+01 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,28 ./. 1/1:1,2:3:6:68,6,0 0/0:3,0:3:3:0,3,27 +chr7 141311021 . A C 224.59 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.132;DP=62;Dels=0.00;FS=65.455;HaplotypeScore=1.2329;MLEAC=5;MLEAF=0.625;MQ=24.34;MQ0=0;MQRankSum=-3.230;QD=3.62;ReadPosRankSum=2.681;SB=0.056 GT:AD:DP:GQ:PL 0/1:10,6:16:61:61,0,181 0/1:16,9:25:99:106,0,226 0/1:8,9:17:62:62,0,132 1/1:2,2:4:3:38,3,0 +chr7 141439003 rs75358342 C T 611.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.104;DB;DP=129;Dels=0.00;FS=9.202;HaplotypeScore=3.4043;MLEAC=3;MLEAF=0.375;MQ=32.27;MQ0=0;MQRankSum=-1.625;QD=7.03;ReadPosRankSum=0.571;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/0:41,0:42:87:0,87,1022 0/1:22,15:37:99:331,0,606 0/1:28,11:39:99:244,0,651 0/1:8,3:11:80:80,0,196 +chr7 141563425 . T A 30.24 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.410;DP=49;Dels=0.02;FS=5.653;HaplotypeScore=8.9980;MLEAC=2;MLEAF=0.333;MQ=16.81;MQ0=0;MQRankSum=1.380;QD=1.04;ReadPosRankSum=0.336;SB=-2.429e+00 GT:AD:DP:GQ:PL 0/1:9,4:13:16:50,0,16 0/1:13,1:15:17:17,0,34 ./. 0/0:7,2:9:3:0,3,28 +chr7 141619210 . T G 107.43 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.925;DP=250;Dels=0.01;FS=259.477;HaplotypeScore=10.1866;MLEAC=3;MLEAF=0.375;MQ=24.92;MQ0=0;MQRankSum=-7.089;QD=0.48;ReadPosRankSum=4.722;SB=-1.681e+00 GT:AD:DP:GQ:PL 0/1:50,14:64:6:6,0,974 0/1:71,15:86:41:41,0,1342 0/1:55,19:74:99:101,0,1017 0/0:18,6:24:5:0,5,224 +chr7 141635538 rs139143325 C CA 3135.24 . AC=7;AF=0.875;AN=8;BaseQRankSum=-3.684;DB;DP=94;FS=0.000;HaplotypeScore=6.8383;MLEAC=8;MLEAF=1.00;MQ=31.53;MQ0=0;MQRankSum=1.328;QD=33.35;ReadPosRankSum=3.800;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:7,17:25:21:943,21,0 0/1:6,13:19:1:629,0,1 1/1:14,14:25:2:910,2,0 1/1:4,14:18:45:700,45,0 +chr7 141721647 . A G 30.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.738;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.8031;MLEAC=3;MLEAF=0.375;MQ=32.71;MQ0=0;MQRankSum=-1.579;QD=0.45;ReadPosRankSum=3.577;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,4:32:52:52,0,579 0/0:31,2:33:9:0,9,631 0/1:19,2:21:7:7,0,393 0/1:13,3:16:13:13,0,298 +chr7 141738308 rs10215476 T C 681.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.571;DB;DP=87;Dels=0.00;FS=5.021;HaplotypeScore=1.6263;MLEAC=3;MLEAF=0.375;MQ=33.70;MQ0=0;MQRankSum=0.138;QD=10.49;ReadPosRankSum=2.054;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,0:22:57:0,57,746 0/1:15,9:24:99:298,0,412 0/1:13,9:22:99:283,0,323 0/1:13,6:19:99:144,0,267 +chr7 141740409 rs10215116 A G 3683.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.696;DB;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=39.07;MQ0=0;MQRankSum=1.696;QD=38.36;ReadPosRankSum=1.659;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:69:911,69,0 1/1:2,23:25:50:931,50,0 1/1:0,24:24:72:971,72,0 1/1:0,23:23:69:870,69,0 +chr7 141750316 rs6948116 C T 537.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.859;DB;DP=50;Dels=0.00;FS=9.188;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=26.96;MQ0=0;MQRankSum=-1.595;QD=10.75;ReadPosRankSum=1.789;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:282,30,0 0/1:8,10:18:99:172,0,160 0/1:8,9:17:93:93,0,153 0/1:3,1:4:33:36,0,33 +chr7 141781976 . C A 30.36 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.221;DP=120;Dels=0.01;FS=122.493;HaplotypeScore=12.4225;MLEAC=4;MLEAF=0.500;MQ=11.17;MQ0=0;MQRankSum=1.073;QD=0.32;ReadPosRankSum=0.217;SB=6.88 GT:AD:DP:GQ:PL 1/1:25,4:29:3:31,3,0 0/0:24,2:26:3:0,3,38 0/1:32,4:36:18:18,0,57 0/1:24,4:28:23:23,0,57 +chr7 141831683 . A G 42.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.097;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=4.6670;MLEAC=1;MLEAF=0.125;MQ=35.15;MQ0=0;MQRankSum=-1.977;QD=1.20;ReadPosRankSum=2.519;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:35,0:35:63:0,63,701 0/0:31,1:32:63:0,63,796 0/1:31,4:35:78:78,0,485 0/0:13,0:13:18:0,18,201 +chr7 141872892 rs9986873 G A 851.29 . AC=5;AF=0.833;AN=6;BaseQRankSum=2.278;DB;DP=38;Dels=0.00;FS=5.268;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=34.60;MQ0=0;MQRankSum=-2.737;QD=23.65;ReadPosRankSum=-0.477;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:39:470,39,0 0/1:10,5:15:99:141,0,328 1/1:0,7:7:21:282,21,0 ./. +chr7 141955250 rs4470937 C T 637.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.992;DB;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.4804;MLEAC=1;MLEAF=0.125;MQ=37.06;MQ0=0;MQRankSum=-2.541;QD=13.87;ReadPosRankSum=0.264;SB=-1.920e+02 GT:AD:DP:GQ:PL 0/1:24,22:46:99:674,0,761 0/0:38,0:38:99:0,111,1398 0/0:41,0:41:99:0,114,1408 0/0:33,0:33:93:0,93,1189 +chr7 142001030 rs56095598 A G 1145.06 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.997;DB;DP=50;Dels=0.00;FS=3.603;HaplotypeScore=2.1875;MLEAC=6;MLEAF=0.750;MQ=32.88;MQ0=0;MQRankSum=3.208;QD=22.90;ReadPosRankSum=0.378;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:4,9:13:27:325,27,0 0/1:6,8:14:20:275,0,20 1/1:3,13:16:39:511,39,0 0/1:4,3:7:15:80,0,15 +chr7 142013410 . A G 86.26 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.881;DP=286;Dels=0.00;FS=54.844;HaplotypeScore=16.7875;MLEAC=4;MLEAF=0.500;MQ=20.44;MQ0=0;MQRankSum=3.767;QD=0.30;ReadPosRankSum=2.924;SB=-6.745e-01 GT:AD:DP:GQ:PL 0/1:68,3:71:36:36,0,466 0/1:71,2:73:7:7,0,370 0/1:75,4:79:29:29,0,466 0/1:59,4:63:56:56,0,406 +chr7 142013470 . C A 36 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.186;DP=284;Dels=0.00;FS=35.429;HaplotypeScore=1.7223;MLEAC=1;MLEAF=0.125;MQ=15.94;MQ0=0;MQRankSum=-3.735;QD=0.57;ReadPosRankSum=-1.136;SB=0.078 GT:AD:DP:GQ:PL 0/0:68,5:73:21:0,21,230 0/0:70,2:72:27:0,27,328 0/0:74,2:76:39:0,39,434 0/1:52,11:63:72:72,0,286 +chr7 142111404 . G A 54.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.940;DP=122;Dels=0.05;FS=33.122;HaplotypeScore=14.8621;MLEAC=4;MLEAF=0.500;MQ=9.50;MQ0=0;MQRankSum=3.846;QD=0.69;ReadPosRankSum=-0.742;SB=-8.322e-02 GT:AD:DP:GQ:PL 0/0:37,3:41:3:0,3,23 0/1:18,5:24:17:17,0,19 1/1:20,2:22:3:25,3,0 0/1:25,3:29:23:54,0,23 +chr7 142148924 . T C 204.50 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.366;DP=139;Dels=0.00;FS=70.466;HaplotypeScore=9.4315;MLEAC=5;MLEAF=0.625;MQ=12.14;MQ0=0;MQRankSum=4.516;QD=1.47;ReadPosRankSum=0.280;SB=-3.850e-02 GT:AD:DP:GQ:PL 1/1:24,11:35:6:47,6,0 0/1:24,9:33:46:92,0,46 0/1:34,6:40:29:42,0,29 0/1:24,7:31:13:67,0,13 +chr7 142162424 . A T 58.99 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.556;DP=111;Dels=0.00;FS=2.286;HaplotypeScore=2.6519;MLEAC=4;MLEAF=0.500;MQ=11.81;MQ0=0;MQRankSum=3.840;QD=0.53;ReadPosRankSum=0.056;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,4:25:29:29,0,86 0/1:21,4:25:47:47,0,94 0/1:26,5:31:13:13,0,67 0/1:27,3:30:12:12,0,59 +chr7 142162463 . C T 101.51 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.181;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=10.76;MQ0=0;MQRankSum=3.368;QD=3.76;ReadPosRankSum=0.978;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:9,4:13:3:24,3,0 1/1:10,4:14:12:112,12,0 ./. ./. +chr7 142168839 . G T 145.73 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.334;DP=33;Dels=0.00;FS=12.270;HaplotypeScore=0.1446;MLEAC=8;MLEAF=1.00;MQ=12.49;MQ0=0;MQRankSum=2.855;QD=4.42;ReadPosRankSum=3.420;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,3:6:6:54,6,0 1/1:5,2:7:6:54,6,0 1/1:7,2:10:6:51,6,0 1/1:8,2:10:3:24,3,0 +chr7 142223893 . C G 85.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.927;DP=121;Dels=0.00;FS=57.082;HaplotypeScore=2.1496;MLEAC=3;MLEAF=0.375;MQ=13.93;MQ0=0;MQRankSum=2.707;QD=0.95;ReadPosRankSum=0.164;SB=-6.477e-01 GT:AD:DP:GQ:PL 0/1:21,3:25:75:75,0,90 0/1:32,2:34:19:31,0,19 0/1:30,1:31:20:21,0,20 0/0:30,1:31:3:0,3,32 +chr7 142247567 . A G 114.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.866;DP=152;Dels=0.00;FS=43.337;HaplotypeScore=4.5038;MLEAC=4;MLEAF=0.500;MQ=17.38;MQ0=0;MQRankSum=1.054;QD=0.75;ReadPosRankSum=-3.185;SB=-3.597e+01 GT:AD:DP:GQ:PL 0/1:28,4:32:49:49,0,184 0/1:37,4:41:50:50,0,313 0/1:35,3:38:19:19,0,292 0/1:35,6:41:39:39,0,217 +chr7 142344750 rs3123 T C 166.13 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.272;DB;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.0590;MLEAC=6;MLEAF=0.750;MQ=14.46;MQ0=0;MQRankSum=2.478;QD=3.53;ReadPosRankSum=2.779;SB=-9.613e+01 GT:AD:DP:GQ:PL 1/1:2,11:13:9:112,9,0 0/1:9,7:16:22:29,0,22 1/1:12,5:18:6:70,6,0 0/0:8,2:11:3:0,3,32 +chr7 142423759 . C T 33.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.434;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.8387;MLEAC=3;MLEAF=0.375;MQ=24.45;MQ0=0;MQRankSum=0.688;QD=0.60;ReadPosRankSum=1.704;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:37:37,0,208 0/1:24,2:26:21:21,0,265 0/0:21,1:22:18:0,18,392 0/1:10,1:11:18:18,0,64 +chr7 142458511 rs138464021 G T 266.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.284;DB;DP=304;Dels=0.00;FS=3.349;HaplotypeScore=1.9417;MLEAC=4;MLEAF=0.500;MQ=12.10;MQ0=0;MQRankSum=3.003;QD=0.88;ReadPosRankSum=-0.549;SB=-8.804e+01 GT:AD:DP:GQ:PL 0/1:72,4:76:19:37,0,19 0/1:64,9:73:7:123,0,7 0/1:67,8:75:58:58,0,76 0/1:67,13:80:90:90,0,124 +chr7 142467449 . C A 769.65 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.231;DP=73;Dels=0.00;FS=9.544;HaplotypeScore=5.2117;MLEAC=5;MLEAF=0.625;MQ=22.50;MQ0=0;MQRankSum=0.544;QD=10.54;ReadPosRankSum=3.007;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,4:13:59:59,0,163 0/1:10,17:27:99:275,0,128 0/1:4,14:18:27:246,0,27 1/1:5,10:15:21:235,21,0 +chr7 142468189 rs1969595 C G 95.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.979;DB;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=1.5715;MLEAC=1;MLEAF=0.125;MQ=18.73;MQ0=0;MQRankSum=3.284;QD=2.53;ReadPosRankSum=-1.122;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:34,4:38:99:132,0,247 0/0:60,0:60:42:0,42,452 0/0:45,0:45:45:0,45,459 0/0:55,0:55:78:0,78,805 +chr7 142471085 . G T 74.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.130;DP=53;Dels=0.00;FS=5.402;HaplotypeScore=1.2896;MLEAC=2;MLEAF=0.250;MQ=22.89;MQ0=0;MQRankSum=-3.038;QD=2.32;ReadPosRankSum=1.815;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,2:12:15:0,15,173 0/1:9,8:17:63:63,0,143 0/0:7,2:9:6:0,6,85 0/1:9,6:15:52:52,0,173 +chr7 142495274 . G C 47.39 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.576;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.9632;MLEAC=3;MLEAF=0.375;MQ=28.51;MQ0=0;MQRankSum=1.538;QD=1.16;ReadPosRankSum=-2.316;SB=-7.667e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:47:47,0,78 0/1:18,2:20:25:25,0,243 0/0:12,1:13:2:0,2,262 0/1:12,1:13:16:16,0,170 +chr7 142566163 rs6944571 C G 1001.03 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.493;DB;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=6.1996;MLEAC=8;MLEAF=1.00;MQ=25.29;MQ0=0;MQRankSum=1.177;QD=19.63;ReadPosRankSum=1.815;SB=-4.896e+02 GT:AD:DP:GQ:PL 1/1:2,9:11:18:188,18,0 1/1:4,7:11:18:189,18,0 1/1:1,8:9:21:253,21,0 1/1:1,17:18:42:410,42,0 +chr7 142574244 . C A 46.74 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.380;DP=101;Dels=0.01;FS=36.806;HaplotypeScore=3.1428;MLEAC=4;MLEAF=0.500;MQ=16.62;MQ0=0;MQRankSum=2.837;QD=0.46;ReadPosRankSum=0.695;SB=2.39 GT:AD:DP:GQ:PL 0/1:18,1:19:25:25,0,31 0/1:26,1:27:23:23,0,61 0/1:25,1:26:26:26,0,80 0/1:27,1:28:15:15,0,116 +chr7 143029371 rs2367941 G T 181.89 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.742;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=26.98;MQ0=0;MQRankSum=0.742;QD=20.21;ReadPosRankSum=0.742;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:3,2:5:6:69,6,0 1/1:0,4:4:12:148,12,0 ./. +chr7 143029797 . T C 265.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.289;DP=279;Dels=0.00;FS=146.352;HaplotypeScore=8.7572;MLEAC=2;MLEAF=0.250;MQ=31.72;MQ0=0;MQRankSum=-5.420;QD=1.69;ReadPosRankSum=-0.096;SB=-9.825e-01 GT:AD:DP:GQ:PL 0/0:74,3:77:97:0,97,1935 0/1:62,11:73:99:168,0,1503 0/1:71,11:83:99:139,0,1554 0/0:40,5:45:11:0,11,1246 +chr7 143039620 rs150314025 G A 818.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.005;DB;DP=113;Dels=0.03;FS=26.293;HaplotypeScore=4.5303;MLEAC=3;MLEAF=0.375;MQ=31.84;MQ0=0;MQRankSum=-1.084;QD=9.99;ReadPosRankSum=1.550;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,9:23:99:232,0,375 0/0:30,0:31:63:0,63,746 0/1:19,11:30:99:302,0,494 0/1:15,11:26:99:328,0,158 +chr7 143088794 . G C 183.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.445;DP=84;Dels=0.00;FS=74.534;HaplotypeScore=5.0101;MLEAC=4;MLEAF=0.500;MQ=36.07;MQ0=0;MQRankSum=-2.313;QD=2.18;ReadPosRankSum=1.903;SB=-1.523e+00 GT:AD:DP:GQ:PL 0/1:16,6:22:99:150,0,475 0/1:17,3:20:31:31,0,455 0/1:23,3:26:40:40,0,681 0/1:15,1:16:3:3,0,281 +chr7 143134791 . A T 123.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.500;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=18.4237;MLEAC=3;MLEAF=0.375;MQ=27.22;MQ0=0;MQRankSum=-1.548;QD=2.21;ReadPosRankSum=2.160;SB=0.629 GT:AD:DP:GQ:PL 0/1:11,4:16:36:36,0,117 0/0:31,2:34:8:0,8,556 0/1:16,4:20:60:60,0,185 0/1:16,3:19:70:70,0,79 +chr7 143339645 . C T 208.80 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.361;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9782;MLEAC=5;MLEAF=0.625;MQ=22.33;MQ0=0;MQRankSum=-1.371;QD=12.28;ReadPosRankSum=0.505;SB=-2.880e+01 GT:AD:DP:GQ:PL 0/1:1,4:5:17:93,0,17 1/1:0,3:3:9:88,9,0 0/1:2,3:5:13:49,0,13 0/1:2,2:4:23:23,0,24 +chr7 143792217 . C T 79.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.514;DP=138;Dels=0.01;FS=14.121;HaplotypeScore=7.0851;MLEAC=3;MLEAF=0.375;MQ=37.30;MQ0=0;MQRankSum=-2.302;QD=0.74;ReadPosRankSum=2.241;SB=-4.040e+00 GT:AD:DP:GQ:PL 0/1:26,5:31:93:93,0,654 0/1:27,3:30:22:22,0,614 0/1:43,3:46:3:3,0,836 0/0:27,2:30:1:0,1,725 +chr7 143870760 . A G 30.27 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.720;DP=12;Dels=0.00;FS=3.522;HaplotypeScore=0.3670;MLEAC=1;MLEAF=0.250;MQ=23.40;MQ0=0;MQRankSum=0.000;QD=5.05;ReadPosRankSum=0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/0:2,0:2:3:0,3,43 0/1:4,2:6:18:62,0,18 ./. +chr7 144015658 . C T 59.78 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.351;DP=48;Dels=0.00;FS=1.431;HaplotypeScore=1.7025;MLEAC=3;MLEAF=0.375;MQ=21.22;MQ0=0;MQRankSum=0.195;QD=1.53;ReadPosRankSum=1.835;SB=-2.517e+01 GT:AD:DP:GQ:PL 0/1:12,2:14:10:10,0,95 0/0:8,0:9:12:0,12,110 0/1:10,4:14:72:72,0,84 0/1:8,3:11:20:20,0,60 +chr7 144096805 . C T 407.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.377;DP=275;Dels=0.00;FS=4.903;HaplotypeScore=1.9388;MLEAC=1;MLEAF=0.125;MQ=37.58;MQ0=0;MQRankSum=-2.939;QD=7.56;ReadPosRankSum=-0.156;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:62,0:62:99:0,184,2423 0/1:37,17:54:99:444,0,1219 0/0:85,0:85:99:0,247,3164 0/0:73,0:73:99:0,208,2689 +chr7 144107345 . C A 42.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.048;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9073;MLEAC=2;MLEAF=0.250;MQ=26.89;MQ0=0;MQRankSum=-1.115;QD=1.53;ReadPosRankSum=2.463;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,1:11:12:0,12,155 0/0:14,0:14:21:0,21,244 0/1:15,4:19:61:61,0,126 0/1:7,1:9:23:23,0,53 +chr7 144150728 . C A 919.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.598;DP=209;Dels=0.00;FS=176.103;HaplotypeScore=8.9805;MLEAC=4;MLEAF=0.500;MQ=30.24;MQ0=0;MQRankSum=-7.812;QD=4.40;ReadPosRankSum=5.947;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:40,18:58:99:252,0,829 0/1:49,20:69:99:303,0,993 0/1:31,17:49:99:285,0,677 0/1:23,9:32:99:122,0,344 +chr7 146536917 . A C 274.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.784;DP=168;Dels=0.01;FS=167.477;HaplotypeScore=9.2507;MLEAC=4;MLEAF=0.500;MQ=33.23;MQ0=0;MQRankSum=-1.794;QD=1.64;ReadPosRankSum=0.163;SB=-1.376e-01 GT:AD:DP:GQ:PL 0/1:39,6:45:58:58,0,1052 0/1:38,11:49:99:214,0,1042 0/1:37,3:40:32:32,0,855 0/1:29,3:32:13:13,0,731 +chr7 148457458 . C T 45.43 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.293;DP=239;Dels=0.00;FS=18.398;HaplotypeScore=3.4191;MLEAC=3;MLEAF=0.375;MQ=25.48;MQ0=0;MQRankSum=3.260;QD=0.30;ReadPosRankSum=0.793;SB=0.157 GT:AD:DP:GQ:PL 0/0:86,3:89:11:0,11,980 0/1:62,2:64:15:15,0,522 0/1:71,4:75:52:52,0,587 0/1:10,1:11:21:21,0,55 +chr7 148463860 rs1014095 T C 947.29 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.120;DB;DP=36;Dels=0.03;FS=10.142;HaplotypeScore=0.7712;MLEAC=6;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=2.203;QD=27.07;ReadPosRankSum=-0.208;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,5:8:15:187,15,0 1/1:3,11:14:33:404,33,0 1/1:0,12:12:33:394,33,0 ./. +chr7 148494858 . A C 48.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.306;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.6698;MLEAC=3;MLEAF=0.375;MQ=19.85;MQ0=0;MQRankSum=0.645;QD=1.22;ReadPosRankSum=-0.102;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:34:34,0,83 0/1:12,2:14:36:36,0,36 0/1:13,1:14:21:21,0,27 0/0:4,0:4:6:0,6,65 +chr7 148851472 . A C 36.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.032;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=13.1004;MLEAC=2;MLEAF=0.250;MQ=25.92;MQ0=0;MQRankSum=0.128;QD=1.42;ReadPosRankSum=0.642;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:20:20,0,90 0/0:16,0:16:12:0,12,98 0/0:17,1:18:18:0,18,173 0/1:11,4:15:58:58,0,86 +chr7 149152381 . G A 47.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.529;DP=132;Dels=0.00;FS=85.484;HaplotypeScore=3.6740;MLEAC=1;MLEAF=0.125;MQ=16.64;MQ0=0;MQRankSum=1.691;QD=1.18;ReadPosRankSum=1.872;SB=1.37 GT:AD:DP:GQ:PL 0/0:31,5:36:24:0,24,288 0/1:35,5:40:83:83,0,189 0/0:26,1:27:12:0,12,137 0/0:27,2:29:24:0,24,261 +chr7 149291073 rs34486093 T C 312.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.127;DB;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8913;MLEAC=4;MLEAF=0.500;MQ=26.55;MQ0=0;MQRankSum=0.646;QD=4.60;ReadPosRankSum=-0.360;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,12:22:99:213,0,138 0/1:13,4:17:15:15,0,164 0/1:11,5:16:94:102,0,94 0/1:10,3:13:25:25,0,109 +chr7 149317062 rs1808231 C T 193.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=4.783;DB;DP=111;Dels=0.01;FS=9.744;HaplotypeScore=0.2367;MLEAC=6;MLEAF=0.750;MQ=10.64;MQ0=0;MQRankSum=0.503;QD=1.75;ReadPosRankSum=1.679;SB=-3.382e+01 GT:AD:DP:GQ:PL 1/1:11,18:29:9:97,9,0 0/1:16,12:28:18:26,0,18 1/1:20,10:30:6:70,6,0 0/1:16,7:23:19:45,0,19 +chr7 149426305 rs11424737 G GC 388.70 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.962;DB;DP=33;FS=2.632;HaplotypeScore=17.0990;MLEAC=6;MLEAF=0.750;MQ=20.92;MQ0=0;MQRankSum=-0.510;QD=11.78;RPA=2,3;RU=C;ReadPosRankSum=2.434;SB=-1.139e+02;STR GT:AD:DP:GQ:PL 1/1:3,1:3:9:87,9,0 1/1:3,3:5:12:159,12,0 0/1:11,1:7:28:95,0,28 0/1:6,3:7:59:102,0,59 +chr7 149427680 . G C 71.39 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.876;DP=13;Dels=0.00;FS=3.522;HaplotypeScore=2.4085;MLEAC=5;MLEAF=0.833;MQ=17.62;MQ0=0;MQRankSum=2.219;QD=7.14;ReadPosRankSum=-0.361;SB=3.27 GT:AD:DP:GQ:PL 1/1:1,2:3:6:54,6,0 ./. 0/1:3,1:4:18:29,0,18 1/1:1,2:3:3:27,3,0 +chr7 149492031 . C G 50.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.674;DP=81;Dels=0.00;FS=2.283;HaplotypeScore=2.9160;MLEAC=4;MLEAF=0.500;MQ=26.42;MQ0=0;MQRankSum=-0.803;QD=0.63;ReadPosRankSum=0.254;SB=-6.574e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:34:34,0,315 0/1:20,2:22:17:17,0,284 0/1:15,2:17:22:22,0,250 0/1:17,2:20:20:20,0,273 +chr7 149493136 . A C 45.72 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.434;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.3481;MLEAC=5;MLEAF=0.625;MQ=31.53;MQ0=0;MQRankSum=0.159;QD=1.99;ReadPosRankSum=-0.478;SB=-5.721e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:23:23,0,60 0/1:5,1:6:21:21,0,54 0/1:10,1:11:15:15,0,161 1/1:0,1:1:3:29,3,0 +chr7 149521183 rs4389841 G A 1295.49 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.094;DB;DP=71;Dels=0.00;FS=4.281;HaplotypeScore=2.0474;MLEAC=6;MLEAF=0.750;MQ=35.48;MQ0=0;MQRankSum=-3.107;QD=18.25;ReadPosRankSum=0.843;SB=-4.036e+02 GT:AD:DP:GQ:PL 0/1:12,5:17:99:115,0,409 0/1:9,10:19:99:307,0,229 1/1:2,17:19:26:624,26,0 1/1:6,9:16:4:294,4,0 +chr7 150389746 . G T 65.70 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.460;DP=91;Dels=0.02;FS=58.672;HaplotypeScore=8.2299;MLEAC=2;MLEAF=0.250;MQ=29.91;MQ0=0;MQRankSum=-1.542;QD=1.40;ReadPosRankSum=0.667;SB=-1.413e+00 GT:AD:DP:GQ:PL 0/0:21,2:23:17:0,17,456 0/1:19,4:23:29:29,0,405 0/0:18,1:19:16:0,16,431 0/1:19,5:24:78:78,0,290 +chr7 150500356 rs741068 T C 38.25 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.026;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=42.22;MQ0=0;MQRankSum=-1.026;QD=12.75;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,1:2:33:33,0,38 0/0:1,0:1:3:0,3,42 ./. 1/1:0,1:1:3:43,3,0 +chr7 150771094 . C CT 361.55 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.606;DP=62;FS=6.214;HaplotypeScore=23.8712;MLEAC=4;MLEAF=0.500;MQ=24.81;MQ0=0;MQRankSum=-0.491;QD=5.83;RPA=1,2;RU=T;ReadPosRankSum=1.126;SB=0.067;STR GT:AD:DP:GQ:PL 0/1:8,3:6:70:70,0,73 0/1:12,3:9:60:60,0,181 0/1:14,5:11:25:183,0,25 0/1:9,7:8:52:100,0,52 +chr7 150791036 rs12670760 A G 47.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=2.041;DB;DP=26;Dels=0.00;FS=6.628;HaplotypeScore=1.0551;MLEAC=4;MLEAF=1.00;MQ=11.34;MQ0=0;MQRankSum=2.041;QD=3.36;ReadPosRankSum=0.537;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:42,3,0 1/1:11,1:12:3:38,3,0 ./. ./. +chr7 150813828 . G C 42.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.475;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0845;MLEAC=2;MLEAF=0.250;MQ=22.73;MQ0=0;MQRankSum=-0.117;QD=1.01;ReadPosRankSum=1.442;SB=-7.928e-01 GT:AD:DP:GQ:PL 0/1:19,1:20:6:6,0,157 0/0:24,2:26:39:0,39,362 0/0:29,2:31:8:0,8,280 0/1:17,5:22:75:75,0,204 +chr7 151064872 rs874607 A G 826.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.396;DB;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.8847;MLEAC=3;MLEAF=0.375;MQ=36.41;MQ0=0;MQRankSum=-3.331;QD=6.78;ReadPosRankSum=2.841;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,178,2402 0/1:41,12:53:99:295,0,1350 0/1:35,16:51:99:442,0,1065 0/1:13,5:18:99:133,0,326 +chr7 151074015 rs2240629 G C 93.39 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.670;DB;DP=19;Dels=0.00;FS=2.027;HaplotypeScore=2.8148;MLEAC=1;MLEAF=0.167;MQ=23.41;MQ0=0;MQRankSum=1.256;QD=13.34;ReadPosRankSum=1.092;SB=26.92 GT:AD:DP:GQ:PL 1/1:0,5:7:12:133,12,0 0/0:6,0:7:9:0,9,86 0/0:4,0:4:6:0,6,59 ./. +chr7 151093193 . T G 148.71 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.356;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=1.4702;MLEAC=2;MLEAF=0.250;MQ=34.28;MQ0=0;MQRankSum=-0.168;QD=4.37;ReadPosRankSum=-0.090;SB=0.126 GT:AD:DP:GQ:PL 0/1:15,3:18:58:58,0,305 0/0:16,1:17:13:0,13,358 0/0:18,0:18:24:0,24,267 0/1:10,5:15:86:132,0,86 +chr7 151135453 . C A 50.39 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.259;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=3.6801;MLEAC=4;MLEAF=0.667;MQ=19.06;MQ0=0;MQRankSum=0.583;QD=2.19;ReadPosRankSum=0.869;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:18:27,0,18 ./. 0/1:8,2:10:18:38,0,18 1/1:4,1:5:3:24,3,0 +chr7 151265931 . G C 88.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.089;DP=106;Dels=0.00;FS=13.079;HaplotypeScore=2.1253;MLEAC=2;MLEAF=0.250;MQ=33.95;MQ0=0;MQRankSum=-0.037;QD=1.41;ReadPosRankSum=0.439;SB=-1.146e-02 GT:AD:DP:GQ:PL 0/1:30,4:34:71:71,0,467 0/0:33,0:33:81:0,81,894 0/1:25,4:29:59:59,0,602 0/0:10,0:10:12:0,12,136 +chr7 151644297 rs1881649 C T 46.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=10;Dels=0.00;FS=3.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.46;MQ0=0;MQRankSum=0.736;QD=15.59;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:1,2:3:6:78,6,0 +chr7 151684407 . C G 32.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.837;DP=115;Dels=0.00;FS=2.442;HaplotypeScore=8.0810;MLEAC=2;MLEAF=0.250;MQ=32.55;MQ0=0;MQRankSum=0.259;QD=0.62;ReadPosRankSum=1.354;SB=0.144 GT:AD:DP:GQ:PL 0/0:25,0:25:21:0,21,251 0/1:21,2:24:27:27,0,309 0/1:26,3:29:47:47,0,347 0/0:35,0:37:27:0,27,315 +chr7 151846060 . C A 35.87 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.595;DP=106;Dels=0.00;FS=10.493;HaplotypeScore=4.6148;MLEAC=2;MLEAF=0.250;MQ=31.50;MQ0=0;MQRankSum=0.337;QD=0.60;ReadPosRankSum=-0.209;SB=3.70 GT:AD:DP:GQ:PL 0/1:22,4:26:66:66,0,435 0/0:15,0:16:24:0,24,250 0/1:31,3:34:10:10,0,653 0/0:30,0:30:48:0,48,502 +chr7 151884404 . C A 77.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.835;DP=159;Dels=0.01;FS=7.234;HaplotypeScore=7.4729;MLEAC=1;MLEAF=0.125;MQ=31.98;MQ0=0;MQRankSum=-1.565;QD=3.55;ReadPosRankSum=0.951;SB=7.501e-03 GT:AD:DP:GQ:PL 0/0:46,0:46:84:0,84,952 0/0:41,1:42:36:0,36,688 0/0:48,0:48:84:0,84,911 0/1:16,6:22:99:114,0,319 +chr7 151896457 . A G 235.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.745;DP=140;Dels=0.00;FS=60.688;HaplotypeScore=2.7225;MLEAC=3;MLEAF=0.375;MQ=34.45;MQ0=0;MQRankSum=-1.762;QD=2.65;ReadPosRankSum=1.000;SB=-6.827e-01 GT:AD:DP:GQ:PL 0/1:34,7:41:99:151,0,898 0/0:49,1:51:99:0,104,1463 0/1:31,8:39:99:119,0,834 0/1:8,1:9:8:8,0,218 +chr7 152000756 rs62495467 C T 53.01 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.403;DB;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.0773;MLEAC=3;MLEAF=0.750;MQ=10.00;MQ0=0;MQRankSum=-2.873;QD=1.71;ReadPosRankSum=0.564;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,8:13:26:26,0,36 ./. 1/1:0,18:18:6:63,6,0 ./. +chr7 152142887 . T A 45.29 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.160;DP=97;Dels=0.00;FS=32.626;HaplotypeScore=1.1792;MLEAC=4;MLEAF=0.500;MQ=12.57;MQ0=0;MQRankSum=1.250;QD=0.61;ReadPosRankSum=0.869;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,2:23:3:0,3,26 1/1:24,1:25:3:31,3,0 0/1:28,2:30:26:26,0,53 0/1:18,1:19:26:30,0,26 +chr7 152306544 rs2871633 G A 789.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.941;DB;DP=30;Dels=0.00;FS=8.603;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=27.79;MQ0=0;MQRankSum=3.067;QD=26.30;ReadPosRankSum=-0.221;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,6:6:18:204,18,0 1/1:2,6:8:18:209,18,0 1/1:2,7:9:18:201,18,0 1/1:1,6:7:18:214,18,0 +chr7 152517296 . G C 33.12 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.750;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1631;MLEAC=2;MLEAF=0.250;MQ=18.00;MQ0=0;MQRankSum=2.620;QD=0.56;ReadPosRankSum=-1.011;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,2:35:47:47,0,160 0/0:32,0:32:12:0,12,108 0/0:29,0:29:9:0,9,75 0/1:23,1:24:27:27,0,65 +chr7 154373158 rs11769541 A C 83.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DB;DP=8;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=22.20;MQ0=0;MQRankSum=1.231;QD=11.89;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:39,3,0 1/1:3,2:5:6:78,6,0 ./. ./. +chr7 154585861 . G C 38.12 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.495;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.0954;MLEAC=1;MLEAF=0.125;MQ=33.48;MQ0=0;MQRankSum=-2.023;QD=2.38;ReadPosRankSum=-0.533;SB=0.107 GT:AD:DP:GQ:PL 0/1:12,4:16:74:74,0,370 0/0:24,3:27:10:0,10,631 0/0:27,1:28:40:0,40,765 0/0:14,0:14:30:0,30,343 +chr7 154598639 rs11764611 G A 1225.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.427;DB;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.6685;MLEAC=3;MLEAF=0.375;MQ=34.69;MQ0=0;MQRankSum=-1.335;QD=14.95;ReadPosRankSum=0.374;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/0:22,0:22:66:0,66,869 0/1:14,8:22:99:216,0,428 0/1:13,16:29:99:527,0,322 0/1:13,18:31:99:526,0,304 +chr7 154759567 . C A 657.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.784;DP=136;Dels=0.01;FS=115.563;HaplotypeScore=4.2094;MLEAC=4;MLEAF=0.500;MQ=35.79;MQ0=0;MQRankSum=-2.777;QD=4.84;ReadPosRankSum=1.541;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,10:36:99:252,0,597 0/1:28,5:33:72:72,0,691 0/1:29,5:34:66:66,0,852 0/1:20,12:32:99:310,0,422 +chr7 155149977 rs6422754 C T 48.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=26.82;MQ0=0;MQRankSum=0.736;QD=12.00;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:2:3:41,3,0 ./. 1/1:1,1:2:3:40,3,0 ./. +chr7 155538252 . C A 48.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.854;DP=75;Dels=0.04;FS=53.495;HaplotypeScore=4.3184;MLEAC=2;MLEAF=0.250;MQ=30.17;MQ0=0;MQRankSum=-1.622;QD=1.08;ReadPosRankSum=0.927;SB=3.43 GT:AD:DP:GQ:PL 0/0:16,2:18:45:0,45,583 0/1:17,1:18:5:5,0,252 0/1:21,4:25:82:82,0,355 0/0:11,0:11:18:0,18,218 +chr7 155559204 . G C 37 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.050;DP=40;Dels=0.00;FS=16.720;HaplotypeScore=5.9951;MLEAC=3;MLEAF=0.375;MQ=23.68;MQ0=0;MQRankSum=-0.397;QD=1.85;ReadPosRankSum=1.050;SB=-5.335e-01 GT:AD:DP:GQ:PL 1/1:5,3:8:6:53,6,0 0/0:7,0:7:12:0,12,115 0/0:12,1:13:2:0,2,181 0/1:9,2:12:27:27,0,141 +chr7 156468588 . A T 174.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.985;DP=119;Dels=0.00;FS=2.352;HaplotypeScore=6.0092;MLEAC=4;MLEAF=0.500;MQ=32.04;MQ0=0;MQRankSum=-3.123;QD=1.47;ReadPosRankSum=2.330;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,2:29:34:34,0,366 0/1:27,8:36:99:131,0,561 0/1:27,4:31:33:33,0,559 0/1:21,2:23:19:19,0,367 +chr7 156469133 rs2302147 C G 982.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.636;DB;DP=111;Dels=0.04;FS=23.124;HaplotypeScore=9.5156;MLEAC=5;MLEAF=0.625;MQ=27.91;MQ0=0;MQRankSum=-0.601;QD=8.85;ReadPosRankSum=0.155;SB=-6.012e+00 GT:AD:DP:GQ:PL 0/1:22,11:33:99:264,0,428 1/1:7,15:22:25:440,25,0 0/1:20,10:30:99:208,0,415 0/1:16,6:22:99:116,0,183 +chr7 157016105 . C A 331.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.633;DP=63;Dels=0.02;FS=2.794;HaplotypeScore=3.0096;MLEAC=4;MLEAF=0.500;MQ=27.63;MQ0=0;MQRankSum=2.064;QD=5.26;ReadPosRankSum=2.872;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,3:16:48:48,0,131 0/1:12,6:18:99:135,0,199 0/1:14,7:21:99:137,0,165 0/1:5,2:7:16:54,0,16 +chr7 157361564 rs7789467 C T 364.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.201;DB;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.7579;MLEAC=3;MLEAF=0.375;MQ=34.17;MQ0=0;MQRankSum=-4.043;QD=4.93;ReadPosRankSum=-1.436;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,9:28:99:194,0,667 0/0:19,0:19:51:0,51,623 0/1:25,5:30:68:68,0,696 0/1:10,6:16:99:146,0,287 +chr7 157439476 . A G 104.88 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.717;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=4.0013;MLEAC=5;MLEAF=0.625;MQ=28.58;MQ0=0;MQRankSum=0.717;QD=5.83;ReadPosRankSum=-0.717;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,3:7:9:99,9,0 0/0:3,0:3:6:0,6,45 0/1:5,1:6:28:28,0,46 1/1:4,1:5:3:23,3,0 +chr7 157637087 rs6973748 A G 48.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=4;MLEAF=1.00;MQ=20.69;MQ0=0;MQRankSum=0.736;QD=9.60;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:39,3,0 ./. 1/1:2,1:3:3:42,3,0 ./. +chr7 157874101 rs73748028 C T 175.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.285;DB;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.9623;MLEAC=1;MLEAF=0.125;MQ=37.51;MQ0=0;MQRankSum=-2.228;QD=6.29;ReadPosRankSum=1.793;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:66:0,66,856 0/1:20,8:28:99:212,0,451 0/0:23,0:23:63:0,63,858 0/0:19,0:19:48:0,48,625 +chr7 157926717 . A C 47.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.203;DP=140;Dels=0.01;FS=4.514;HaplotypeScore=8.6621;MLEAC=1;MLEAF=0.125;MQ=32.73;MQ0=0;MQRankSum=-2.701;QD=1.41;ReadPosRankSum=0.807;SB=-9.169e-03 GT:AD:DP:GQ:PL 0/0:28,1:29:43:0,43,841 0/0:39,2:41:37:0,37,864 0/0:33,1:34:52:0,52,909 0/1:28,6:34:84:84,0,578 +chr7 158476148 rs6969248 G A 3135.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.383;DB;DP=118;Dels=0.02;FS=19.968;HaplotypeScore=3.8748;MLEAC=8;MLEAF=1.00;MQ=31.52;MQ0=0;MQRankSum=3.709;QD=26.58;ReadPosRankSum=-0.445;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:7,31:38:66:1060,66,0 1/1:6,25:31:69:800,69,0 1/1:4,22:26:60:726,60,0 1/1:4,16:21:48:589,48,0 +chr7 158512355 rs34524453 AG A 1519.96 . AC=8;AF=1.00;AN=8;DB;DP=39;FS=0.000;HaplotypeScore=9.4162;MLEAC=8;MLEAF=1.00;MQ=31.03;MQ0=0;QD=38.97;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:2,8:8:24:341,24,0 1/1:0,11:11:33:500,33,0 1/1:0,8:8:24:363,24,0 1/1:0,9:9:24:364,24,0 +chr8 618721 . G A 63.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.538;DP=95;Dels=0.03;FS=12.942;HaplotypeScore=15.4598;MLEAC=3;MLEAF=0.375;MQ=28.19;MQ0=0;MQRankSum=0.640;QD=0.87;ReadPosRankSum=-0.914;SB=0.348 GT:AD:DP:GQ:PL 0/1:14,1:15:10:10,0,253 0/1:23,4:27:62:62,0,523 0/1:25,3:28:34:34,0,499 0/0:21,1:22:10:0,10,452 +chr8 618728 rs2271263 A G 458.09 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.590;DB;DP=96;Dels=0.01;FS=3.437;HaplotypeScore=15.4758;MLEAC=2;MLEAF=0.250;MQ=27.05;MQ0=0;MQRankSum=-0.798;QD=10.41;ReadPosRankSum=-0.703;SB=-7.368e+01 GT:AD:DP:GQ:PL 1/1:6,12:19:4:341,4,0 0/0:31,0:31:81:0,81,873 0/1:15,9:24:99:161,0,343 0/0:18,2:21:22:0,22,456 +chr8 665858 rs1869074 C T 974.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.756;DB;DP=185;Dels=0.00;FS=1.613;HaplotypeScore=1.1621;MLEAC=3;MLEAF=0.375;MQ=38.77;MQ0=0;MQRankSum=-0.229;QD=7.33;ReadPosRankSum=-0.363;SB=-2.550e+02 GT:AD:DP:GQ:PL 0/1:33,15:48:99:462,0,1096 0/0:52,0:52:99:0,150,2014 0/1:39,7:46:99:157,0,1282 0/1:26,13:39:99:399,0,887 +chr8 1645507 . T G 182.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.075;DP=153;Dels=0.00;FS=21.592;HaplotypeScore=6.2792;MLEAC=3;MLEAF=0.375;MQ=30.22;MQ0=0;MQRankSum=-0.003;QD=1.60;ReadPosRankSum=-0.543;SB=-1.631e+00 GT:AD:DP:GQ:PL 0/1:27,2:29:5:5,0,634 0/1:39,5:44:69:69,0,823 0/0:36,3:39:5:0,5,902 0/1:32,9:41:99:149,0,607 +chr8 1905132 rs3735876 G A 3653.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.446;DB;DP=245;Dels=0.00;FS=2.913;HaplotypeScore=1.9822;MLEAC=4;MLEAF=0.500;MQ=37.47;MQ0=0;MQRankSum=-1.697;QD=20.07;ReadPosRankSum=3.141;SB=-1.801e+03 GT:AD:DP:GQ:PL 1/1:4,48:52:99:1805,119,0 0/0:63,0:63:99:0,178,2361 0/1:35,34:69:99:1131,0,1055 0/1:38,23:61:99:717,0,974 +chr8 2808811 . G T 493.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.897;DP=154;Dels=0.00;FS=123.586;HaplotypeScore=7.6651;MLEAC=4;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=-2.247;QD=3.20;ReadPosRankSum=0.768;SB=-6.624e-01 GT:AD:DP:GQ:PL 0/1:27,14:41:99:279,0,539 0/1:32,8:40:99:123,0,507 0/1:38,7:45:99:126,0,695 0/1:23,5:28:7:7,0,385 +chr8 2823304 . G A 279.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.783;DP=182;Dels=0.01;FS=1.292;HaplotypeScore=2.6535;MLEAC=3;MLEAF=0.375;MQ=34.15;MQ0=0;MQRankSum=-4.912;QD=2.09;ReadPosRankSum=0.052;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:49,7:56:78:78,0,1383 0/1:37,8:45:95:95,0,905 0/0:47,1:48:85:0,85,1303 0/1:23,9:32:99:150,0,569 +chr8 3045393 . G T 49.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.526;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8650;MLEAC=2;MLEAF=0.250;MQ=34.34;MQ0=0;MQRankSum=-2.634;QD=1.05;ReadPosRankSum=-1.283;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:32,0:32:69:0,69,900 0/1:17,3:21:37:37,0,413 0/0:38,0:38:93:0,93,1093 0/1:22,4:26:54:54,0,546 +chr8 3071882 rs1442392 G A 64.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.217;DB;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.3670;MLEAC=3;MLEAF=0.375;MQ=43.95;MQ0=0;MQRankSum=-1.949;QD=10.81;ReadPosRankSum=-1.949;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:24:0,24,348 0/1:1,1:2:36:36,0,38 0/1:2,1:3:32:32,0,79 1/1:0,1:1:3:41,3,0 +chr8 3226994 rs6984628 A G 634.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.529;DB;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.0231;MLEAC=3;MLEAF=0.375;MQ=34.98;MQ0=0;MQRankSum=-2.182;QD=12.45;ReadPosRankSum=1.844;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,11:25:99:338,0,467 0/0:24,0:24:69:0,69,888 0/1:11,7:18:99:207,0,325 0/1:4,4:8:99:133,0,99 +chr8 3263528 rs1161518 G A 319.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.691;DB;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.9890;MLEAC=3;MLEAF=0.375;MQ=31.25;MQ0=0;MQRankSum=-1.596;QD=6.27;ReadPosRankSum=-0.274;SB=-1.178e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:53:53,0,222 0/0:20,0:20:51:0,51,587 0/1:14,8:22:99:176,0,264 0/1:13,6:19:99:134,0,183 +chr8 3623701 rs60982217 G A 41.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.380;DB;DP=9;Dels=0.00;FS=8.451;HaplotypeScore=0.8321;MLEAC=4;MLEAF=1.00;MQ=16.49;MQ0=0;MQRankSum=0.720;QD=6.84;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,2:3:3:35,3,0 1/1:1,2:3:3:39,3,0 ./. +chr8 4851015 rs77808916 T C 49.77 . AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.00;MQ0=0;QD=24.88;SB=-3.976e+01 GT:AD:DP:GQ:PL ./. ./. 1/1:0,2:2:6:81,6,0 ./. +chr8 6605227 . T C 639.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.824;DP=97;Dels=0.00;FS=96.971;HaplotypeScore=5.0830;MLEAC=4;MLEAF=0.500;MQ=31.17;MQ0=0;MQRankSum=-2.606;QD=6.59;ReadPosRankSum=5.697;SB=-1.073e-02 GT:AD:DP:GQ:PL 0/1:13,9:22:99:250,0,204 0/1:17,5:22:99:112,0,370 0/1:26,8:34:99:123,0,512 0/1:11,8:19:99:197,0,207 +chr8 6682861 . C T 159.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.109;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7514;MLEAC=2;MLEAF=0.250;MQ=27.38;MQ0=0;MQRankSum=-0.359;QD=7.25;ReadPosRankSum=-1.015;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,5:11:99:110,0,107 0/0:11,0:11:24:0,24,267 0/1:6,5:11:91:91,0,120 0/0:9,0:9:21:0,21,230 +chr8 7153398 rs113693527 T C 223.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.372;DB;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.9726;MLEAC=3;MLEAF=0.375;MQ=16.65;MQ0=0;MQRankSum=2.935;QD=3.61;ReadPosRankSum=1.312;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:74:74,0,93 0/0:14,0:14:15:0,15,136 0/1:14,5:19:80:110,0,80 0/1:19,5:24:83:83,0,87 +chr8 7155165 rs189698656 C T 77.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.416;DB;DP=174;Dels=0.01;FS=1.210;HaplotypeScore=9.6323;MLEAC=2;MLEAF=0.250;MQ=22.69;MQ0=0;MQRankSum=1.929;QD=0.83;ReadPosRankSum=-2.748;SB=-1.725e+01 GT:AD:DP:GQ:PL 0/0:45,1:46:53:0,53,871 0/0:33,1:34:35:0,35,521 0/1:44,8:52:99:102,0,780 0/1:38,3:41:17:17,0,672 +chr8 7157718 . T C 108.83 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.273;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=15.55;MQ0=0;MQRankSum=-1.504;QD=6.80;ReadPosRankSum=-0.347;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,3:3:3:22,3,0 0/1:1,6:7:11:81,0,11 1/1:1,5:6:6:44,6,0 +chr8 7191012 . T C 616.35 . AC=6;AF=0.750;AN=8;BaseQRankSum=5.071;DP=150;Dels=0.00;FS=42.775;HaplotypeScore=0.4160;MLEAC=6;MLEAF=0.750;MQ=12.78;MQ0=0;MQRankSum=5.111;QD=4.11;ReadPosRankSum=1.225;SB=-4.453e+01 GT:AD:DP:GQ:PL 1/1:13,21:34:2:209,2,0 0/1:15,25:40:33:159,0,33 1/1:15,26:41:21:211,21,0 0/1:16,19:35:19:81,0,19 +chr8 7195973 . T C 111.52 . AC=3;AF=0.500;AN=6;BaseQRankSum=3.627;DP=87;Dels=0.00;FS=13.248;HaplotypeScore=2.3671;MLEAC=3;MLEAF=0.500;MQ=16.97;MQ0=0;MQRankSum=-0.123;QD=1.57;ReadPosRankSum=-0.913;SB=-3.718e+01 GT:AD:DP:GQ:PL 0/1:19,4:23:12:94,0,12 ./. 0/1:22,3:25:40:40,0,75 0/1:19,4:23:16:16,0,20 +chr8 7199590 . T G 454.51 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.711;DP=124;Dels=0.01;FS=0.790;HaplotypeScore=4.7199;MLEAC=4;MLEAF=0.500;MQ=13.75;MQ0=0;MQRankSum=6.888;QD=3.67;ReadPosRankSum=4.813;SB=-2.177e+02 GT:AD:DP:GQ:PL 0/1:19,9:28:5:103,0,5 0/1:23,7:30:43:118,0,43 0/1:22,9:31:9:116,0,9 0/1:23,11:34:34:159,0,34 +chr8 7215446 rs9693661 T C 463.41 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.094;DB;DP=102;Dels=0.00;FS=0.848;HaplotypeScore=2.9431;MLEAC=6;MLEAF=0.750;MQ=13.76;MQ0=0;MQRankSum=1.583;QD=4.54;ReadPosRankSum=2.668;SB=-3.899e+01 GT:AD:DP:GQ:PL 1/1:2,21:23:24:295,24,0 0/1:27,8:35:48:48,0,54 0/1:22,8:30:69:69,0,72 1/1:8,6:14:9:97,9,0 +chr8 7218621 rs3989699 C G 359.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.895;DB;DP=283;Dels=0.00;FS=0.903;HaplotypeScore=2.0973;MLEAC=3;MLEAF=0.375;MQ=14.94;MQ0=0;MQRankSum=0.302;QD=4.67;ReadPosRankSum=3.514;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,21:26:24:289,24,0 0/0:120,4:124:54:0,54,643 0/0:80,2:82:33:0,33,407 0/1:46,5:51:99:120,0,448 +chr8 7286413 . T G 80.76 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.731;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.4833;MLEAC=4;MLEAF=1.00;MQ=20.24;MQ0=0;MQRankSum=0.731;QD=13.46;ReadPosRankSum=-0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:9:82,9,0 ./. ./. 1/1:1,1:2:3:33,3,0 +chr8 7629258 . C T 88.68 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.352;DP=30;Dels=0.00;FS=5.653;HaplotypeScore=4.0628;MLEAC=3;MLEAF=0.500;MQ=18.27;MQ0=0;MQRankSum=-0.070;QD=3.17;ReadPosRankSum=-2.749;SB=-5.825e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:39:58,0,39 ./. 0/1:7,3:10:10:56,0,10 0/1:6,1:7:13:13,0,74 +chr8 7825280 . A C 49.74 . AC=3;AF=0.500;AN=6;BaseQRankSum=2.007;DP=45;Dels=0.00;FS=3.771;HaplotypeScore=2.2345;MLEAC=3;MLEAF=0.500;MQ=13.96;MQ0=0;MQRankSum=1.303;QD=2.16;ReadPosRankSum=-1.725;SB=-2.649e+01 GT:AD:DP:GQ:PL 0/1:4,2:6:19:26,0,19 0/0:8,3:12:3:0,3,28 1/1:10,6:17:6:63,6,0 ./. +chr8 7877664 . A G 467.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.501;DP=163;Dels=0.01;FS=293.817;HaplotypeScore=16.4617;MLEAC=4;MLEAF=0.500;MQ=18.50;MQ0=0;MQRankSum=0.761;QD=2.87;ReadPosRankSum=0.019;SB=-2.793e+00 GT:AD:DP:GQ:PL 0/1:29,11:40:97:97,0,286 0/1:28,14:42:99:107,0,235 0/1:28,13:41:99:187,0,199 0/1:26,12:38:99:119,0,271 +chr8 8093412 rs181345980 G T 60.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.470;DB;DP=345;Dels=0.00;FS=35.306;HaplotypeScore=1.5768;MLEAC=2;MLEAF=0.250;MQ=15.33;MQ0=0;MQRankSum=3.599;QD=0.33;ReadPosRankSum=-1.514;SB=-7.588e+00 GT:AD:DP:GQ:PL 0/1:94,4:98:92:92,0,378 0/1:86,1:87:8:8,0,205 0/0:83,1:85:10:0,10,439 0/0:75,0:75:42:0,42,460 +chr8 8094699 rs146320244 G C 70.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.457;DB;DP=159;Dels=0.04;FS=51.937;HaplotypeScore=12.7769;MLEAC=3;MLEAF=0.375;MQ=14.24;MQ0=0;MQRankSum=1.562;QD=0.57;ReadPosRankSum=1.316;SB=8.11 GT:AD:DP:GQ:PL 0/1:41,1:42:9:9,0,110 0/0:31,0:32:18:0,18,174 0/1:36,5:42:47:47,0,154 0/1:33,4:37:57:57,0,67 +chr8 8747537 rs399123 T C 1868.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.166;DB;DP=126;Dels=0.02;FS=3.047;HaplotypeScore=0.4732;MLEAC=5;MLEAF=0.625;MQ=36.75;MQ0=0;MQRankSum=-3.229;QD=14.83;ReadPosRankSum=0.662;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,17:39:99:517,0,725 1/1:3,23:27:33:790,33,0 0/1:24,12:36:99:347,0,740 0/1:14,8:22:99:260,0,441 +chr8 9599082 rs74939454 G A 99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.523;DB;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.4996;MLEAC=1;MLEAF=0.125;MQ=40.03;MQ0=0;MQRankSum=0.021;QD=7.62;ReadPosRankSum=1.233;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,4:13:99:135,0,253 0/0:10,0:10:27:0,27,385 0/0:14,0:14:39:0,39,512 0/0:7,0:7:21:0,21,274 +chr8 9605654 . C A 69.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.931;DP=91;Dels=0.00;FS=5.033;HaplotypeScore=16.3080;MLEAC=3;MLEAF=0.375;MQ=25.53;MQ0=0;MQRankSum=-0.064;QD=1.04;ReadPosRankSum=1.476;SB=3.29 GT:AD:DP:GQ:PL 0/1:23,2:26:26:26,0,235 0/0:24,0:24:6:0,6,74 0/1:22,2:24:25:25,0,174 0/1:14,3:17:58:61,0,58 +chr8 10101914 rs4840468 G C 50.77 . AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=25.38;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:82,6,0 ./. ./. ./. +chr8 10150141 rs4840474 G C 49.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;MQRankSum=0.736;QD=16.59;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,2:3:6:81,6,0 ./. ./. +chr8 10423357 rs4240655 G C 45.77 . AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=0;QD=15.26;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,3:3:6:77,6,0 ./. +chr8 10466985 . G T 119.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.656;DP=58;Dels=0.00;FS=4.845;HaplotypeScore=2.7501;MLEAC=2;MLEAF=0.250;MQ=30.51;MQ0=0;MQRankSum=1.245;QD=3.74;ReadPosRankSum=-1.355;SB=-3.835e-04 GT:AD:DP:GQ:PL 0/0:14,0:14:24:0,24,267 0/1:10,3:13:65:65,0,236 0/0:12,0:12:27:0,27,318 0/1:15,4:19:96:96,0,235 +chr8 10530037 rs11250057 G A 471.80 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.576;DB;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.4338;MLEAC=8;MLEAF=1.00;MQ=24.42;MQ0=0;MQRankSum=1.419;QD=19.66;ReadPosRankSum=-1.419;SB=-3.401e+01 GT:AD:DP:GQ:PL 1/1:0,9:10:24:271,24,0 1/1:0,3:3:6:72,6,0 1/1:0,4:4:9:100,9,0 1/1:2,5:7:6:67,6,0 +chr8 10623138 rs1078543 T A 125.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.086;DB;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=0.7210;MLEAC=1;MLEAF=0.125;MQ=37.92;MQ0=0;MQRankSum=-2.396;QD=4.67;ReadPosRankSum=-0.799;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/0:33,0:33:87:0,87,1208 0/1:20,7:27:99:162,0,571 0/0:31,0:31:87:0,87,1128 0/0:28,0:28:78:0,78,992 +chr8 10755767 . C A 94.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.737;DP=52;Dels=0.04;FS=2.637;HaplotypeScore=7.3767;MLEAC=4;MLEAF=0.500;MQ=26.45;MQ0=0;MQRankSum=-2.525;QD=1.82;ReadPosRankSum=0.159;SB=-4.020e-02 GT:AD:DP:GQ:PL 0/1:4,2:7:29:29,0,124 0/1:16,5:21:58:58,0,239 0/1:10,1:11:18:18,0,144 0/1:9,2:11:32:32,0,165 +chr8 10892719 . G T 31.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.173;DP=87;Dels=0.05;FS=0.000;HaplotypeScore=24.1883;MLEAC=1;MLEAF=0.125;MQ=25.30;MQ0=0;MQRankSum=-1.446;QD=1.11;ReadPosRankSum=-0.609;SB=7.070e-03 GT:AD:DP:GQ:PL 0/0:21,1:22:23:0,23,528 0/1:22,5:27:67:67,0,340 0/0:16,0:16:27:0,27,267 0/0:16,2:18:12:0,12,127 +chr8 11172412 . T A 155.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.100;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=14.1038;MLEAC=3;MLEAF=0.375;MQ=26.84;MQ0=0;MQRankSum=1.649;QD=2.32;ReadPosRankSum=1.056;SB=11.78 GT:AD:DP:GQ:PL 0/1:13,3:16:48:48,0,93 0/1:14,5:19:99:122,0,206 0/1:18,1:20:5:5,0,190 0/1:10,1:11:22:22,0,66 +chr8 11172427 . A T 106.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.831;DP=87;Dels=0.00;FS=2.362;HaplotypeScore=4.1908;MLEAC=4;MLEAF=0.500;MQ=29.82;MQ0=0;MQRankSum=-1.419;QD=1.23;ReadPosRankSum=0.928;SB=-1.111e-01 GT:AD:DP:GQ:PL 0/1:23,3:26:16:16,0,489 0/1:15,5:20:86:86,0,271 0/1:25,2:27:17:17,0,515 0/1:12,2:14:30:30,0,236 +chr8 11189075 . C G 37.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.203;DP=293;Dels=0.00;FS=79.430;HaplotypeScore=7.3329;MLEAC=1;MLEAF=0.125;MQ=13.06;MQ0=0;MQRankSum=-0.300;QD=0.27;ReadPosRankSum=-2.221;SB=-5.591e+00 GT:AD:DP:GQ:PL 0/1:55,9:64:72:72,0,163 0/0:61,4:65:9:0,9,95 0/0:85,2:87:13:0,13,319 0/1:73,4:77:1:1,0,238 +chr8 11213823 . C G 31.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.670;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.8740;MLEAC=4;MLEAF=0.500;MQ=31.05;MQ0=0;MQRankSum=-4.715;QD=0.39;ReadPosRankSum=-0.985;SB=-1.190e-02 GT:AD:DP:GQ:PL 0/1:19,4:23:18:18,0,588 0/1:19,4:23:4:4,0,448 0/1:16,5:21:46:46,0,335 0/1:12,2:14:3:3,0,177 +chr8 11606577 . A G 65.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.015;DP=67;Dels=0.00;FS=5.010;HaplotypeScore=5.8874;MLEAC=3;MLEAF=0.375;MQ=29.18;MQ0=0;MQRankSum=-2.084;QD=1.24;ReadPosRankSum=1.385;SB=0.089 GT:AD:DP:GQ:PL 0/1:15,2:17:29:29,0,171 0/0:14,0:14:21:0,21,246 0/1:17,2:19:26:26,0,278 0/1:12,4:17:54:54,0,93 +chr8 11683653 rs904011 T C 2137.80 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.857;DB;DP=166;Dels=0.00;FS=16.515;HaplotypeScore=24.0147;MLEAC=7;MLEAF=0.875;MQ=26.96;MQ0=0;MQRankSum=0.970;QD=12.88;ReadPosRankSum=-1.354;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:14,27:41:58:834,58,0 1/1:20,29:49:15:650,15,0 0/1:24,24:48:2:578,0,2 0/1:17,10:28:64:119,0,64 +chr8 11777849 rs6987692 C T 122.27 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.056;DB;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.1362;MLEAC=3;MLEAF=0.500;MQ=13.11;MQ0=0;MQRankSum=3.191;QD=1.72;ReadPosRankSum=-0.755;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:26,2:28:48:48,0,127 0/1:19,5:24:48:84,0,48 0/1:18,1:19:29:29,0,53 +chr8 11832263 rs10108320 A T 43.26 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.826;DB;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.0321;MLEAC=3;MLEAF=0.750;MQ=15.09;MQ0=0;MQRankSum=1.611;QD=4.81;ReadPosRankSum=-1.396;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/0:5,0:5:3:0,3,42 1/1:7,2:9:6:78,6,0 ./. +chr8 11986835 . T G 44.36 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.503;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=6.97;MQ0=0;MQRankSum=1.247;QD=1.14;ReadPosRankSum=2.167;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:16:49,0,16 ./. ./. 1/1:19,4:23:3:30,3,0 +chr8 11990688 . A G 205.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.990;DP=314;Dels=0.00;FS=13.107;HaplotypeScore=1.6608;MLEAC=4;MLEAF=0.500;MQ=10.80;MQ0=0;MQRankSum=6.214;QD=0.66;ReadPosRankSum=-1.036;SB=-3.705e+01 GT:AD:DP:GQ:PL 0/1:73,8:81:17:17,0,150 0/1:71,12:83:67:74,0,67 0/1:50,22:72:99:103,0,107 0/1:53,24:78:21:54,0,21 +chr8 11990710 . G T 106.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.077;DP=286;Dels=0.00;FS=2.884;HaplotypeScore=8.2684;MLEAC=2;MLEAF=0.250;MQ=10.20;MQ0=0;MQRankSum=4.702;QD=0.83;ReadPosRankSum=-1.801;SB=-5.882e+01 GT:AD:DP:GQ:PL 0/0:77,1:78:12:0,12,124 0/0:78,1:80:9:0,9,122 0/1:55,10:65:30:63,0,30 0/1:51,11:62:83:84,0,83 +chr8 11991120 . T C 246.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.786;DP=203;Dels=0.00;FS=50.136;HaplotypeScore=10.2522;MLEAC=4;MLEAF=0.500;MQ=12.50;MQ0=0;MQRankSum=4.131;QD=1.22;ReadPosRankSum=4.362;SB=-7.912e-02 GT:AD:DP:GQ:PL 0/1:48,4:52:53:100,0,53 0/1:51,1:52:16:16,0,153 0/1:51,3:54:45:45,0,144 0/1:37,7:44:99:128,0,151 +chr8 11994685 . A T 418.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.398;DP=166;Dels=0.04;FS=85.820;HaplotypeScore=8.2681;MLEAC=3;MLEAF=0.375;MQ=14.34;MQ0=0;MQRankSum=6.084;QD=3.25;ReadPosRankSum=-1.684;SB=0.039 GT:AD:DP:GQ:PL 0/1:41,7:48:87:171,0,87 0/1:33,8:41:67:167,0,67 0/1:30,5:35:36:122,0,36 0/0:34,1:35:3:0,3,31 +chr8 12231980 . G T 67.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.006;DP=339;Dels=0.00;FS=49.275;HaplotypeScore=14.2571;MLEAC=3;MLEAF=0.375;MQ=14.58;MQ0=0;MQRankSum=3.059;QD=0.25;ReadPosRankSum=-3.331;SB=-1.904e-02 GT:AD:DP:GQ:PL 0/1:80,6:86:19:19,0,431 0/0:67,1:69:27:0,27,250 0/1:101,5:106:58:58,0,383 0/1:73,5:78:34:34,0,334 +chr8 12232466 . A G 64.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.932;DP=284;Dels=0.00;FS=23.540;HaplotypeScore=9.2098;MLEAC=3;MLEAF=0.375;MQ=15.02;MQ0=0;MQRankSum=3.171;QD=0.31;ReadPosRankSum=0.517;SB=-1.492e+00 GT:AD:DP:GQ:PL 0/0:72,3:75:3:0,3,245 0/1:59,5:64:36:36,0,200 0/1:72,3:75:58:58,0,173 0/1:69,1:70:11:11,0,118 +chr8 12237393 rs112183959 G A 150.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=3.728;DB;DP=309;Dels=0.00;FS=1.606;HaplotypeScore=5.1592;MLEAC=2;MLEAF=0.250;MQ=17.77;MQ0=0;MQRankSum=-0.182;QD=0.97;ReadPosRankSum=-2.055;SB=-4.403e+01 GT:AD:DP:GQ:PL 0/0:78,1:79:14:0,14,436 0/1:46,17:64:99:175,0,268 0/1:86,5:91:16:16,0,552 0/0:71,4:75:17:0,17,617 +chr8 12493831 . C A 30.14 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.181;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=1.4741;MLEAC=3;MLEAF=0.375;MQ=11.04;MQ0=0;MQRankSum=1.476;QD=0.44;ReadPosRankSum=-0.543;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,5:26:20:20,0,29 1/1:37,4:41:6:55,6,0 0/0:47,2:49:21:0,21,245 0/0:16,1:17:12:0,12,134 +chr8 12948854 . C T 173.71 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.336;DP=214;Dels=0.00;FS=29.949;HaplotypeScore=2.4711;MLEAC=1;MLEAF=0.125;MQ=37.57;MQ0=0;MQRankSum=-3.367;QD=4.96;ReadPosRankSum=0.197;SB=-7.908e+00 GT:AD:DP:GQ:PL 0/0:53,4:57:2:0,2,1571 0/0:56,1:57:99:0,109,1712 0/0:60,5:65:33:0,33,1779 0/1:26,9:35:99:209,0,618 +chr8 12957475 rs532841 C T 2824.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.070;DB;DP=206;Dels=0.00;FS=1.248;HaplotypeScore=0.7484;MLEAC=4;MLEAF=0.500;MQ=41.42;MQ0=0;MQRankSum=-0.639;QD=13.71;ReadPosRankSum=0.765;SB=-7.090e+02 GT:AD:DP:GQ:PL 0/1:29,21:50:99:741,0,979 0/1:21,24:45:99:894,0,706 0/1:34,23:57:99:794,0,1214 0/1:39,15:54:99:438,0,1336 +chr8 14095250 rs67184550 A T 6203.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.941;DB;DP=190;Dels=0.00;FS=37.678;HaplotypeScore=0.7453;MLEAC=8;MLEAF=1.00;MQ=30.21;MQ0=0;MQRankSum=1.294;QD=32.65;ReadPosRankSum=1.337;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1742,130,0 1/1:1,47:48:99:1643,141,0 1/1:2,55:57:99:1886,165,0 1/1:0,29:29:84:932,84,0 +chr8 15531295 . C A 110.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.780;DP=138;Dels=0.00;FS=38.104;HaplotypeScore=5.6548;MLEAC=2;MLEAF=0.250;MQ=35.14;MQ0=0;MQRankSum=-2.465;QD=1.37;ReadPosRankSum=-0.787;SB=-9.517e-01 GT:AD:DP:GQ:PL 0/1:39,6:45:93:93,0,908 0/1:31,5:36:59:59,0,544 0/0:43,2:45:28:0,28,910 0/0:12,0:12:21:0,21,268 +chr8 17055810 rs114437970 A G 317.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.890;DB;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.3670;MLEAC=1;MLEAF=0.125;MQ=35.17;MQ0=0;MQRankSum=-2.458;QD=6.49;ReadPosRankSum=1.392;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:34,15:49:99:354,0,937 0/0:49,0:49:99:0,141,1864 0/0:63,0:63:99:0,184,2383 0/0:22,0:22:57:0,57,711 +chr8 17125837 . A T 98.18 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.071;DP=218;Dels=0.00;FS=54.133;HaplotypeScore=22.0174;MLEAC=4;MLEAF=0.500;MQ=16.81;MQ0=0;MQRankSum=3.169;QD=0.45;ReadPosRankSum=2.672;SB=-3.342e-01 GT:AD:DP:GQ:PL 0/1:63,4:68:18:18,0,461 0/1:63,4:67:56:56,0,235 0/1:62,4:66:58:58,0,289 0/1:14,2:16:8:8,0,129 +chr8 17170740 rs10096063 C G 362.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.215;DB;DP=51;Dels=0.00;FS=2.553;HaplotypeScore=0.9677;MLEAC=3;MLEAF=0.375;MQ=39.67;MQ0=0;MQRankSum=-2.117;QD=10.08;ReadPosRankSum=-0.623;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,4:18:99:117,0,502 0/0:15,0:15:39:0,39,529 0/1:5,5:10:99:154,0,107 0/1:4,4:8:99:135,0,138 +chr8 17206588 rs2285291 G A 1462.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.149;DB;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=1.3143;MLEAC=3;MLEAF=0.375;MQ=39.72;MQ0=0;MQRankSum=-5.006;QD=9.56;ReadPosRankSum=1.528;SB=-4.490e+02 GT:AD:DP:GQ:PL 0/1:40,18:58:99:543,0,1305 0/0:66,0:66:99:0,193,2624 0/1:39,14:53:99:397,0,1417 0/1:24,17:41:99:566,0,689 +chr8 17453874 . A C 47.03 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.406;DP=13;Dels=0.00;FS=3.680;HaplotypeScore=1.0974;MLEAC=5;MLEAF=0.833;MQ=19.53;MQ0=0;MQRankSum=1.537;QD=6.72;ReadPosRankSum=-0.988;SB=5.17 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:33,3,0 0/0:3,0:3:3:0,3,24 1/1:3,2:5:6:53,6,0 +chr8 17486063 . G C 177.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.784;DP=173;Dels=0.02;FS=168.638;HaplotypeScore=6.4002;MLEAC=3;MLEAF=0.375;MQ=38.27;MQ0=0;MQRankSum=-4.041;QD=1.43;ReadPosRankSum=0.061;SB=-2.291e+00 GT:AD:DP:GQ:PL 0/1:34,3:37:6:6,0,1042 0/0:45,2:47:48:0,48,1242 0/1:41,11:52:99:202,0,1044 0/1:31,3:34:11:11,0,852 +chr8 17486092 . T C 172.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.466;DP=141;Dels=0.00;FS=24.493;HaplotypeScore=3.6952;MLEAC=3;MLEAF=0.375;MQ=34.20;MQ0=0;MQRankSum=-2.470;QD=1.75;ReadPosRankSum=-1.080;SB=2.41 GT:AD:DP:GQ:PL 0/1:24,4:28:76:76,0,664 0/1:38,6:44:62:62,0,852 0/0:39,3:42:23:0,23,1060 0/1:22,5:27:78:78,0,476 +chr8 17532573 rs2269698 T C 65.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.150;DB;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.5080;MLEAC=3;MLEAF=0.375;MQ=32.33;MQ0=0;MQRankSum=0.050;QD=4.34;ReadPosRankSum=1.050;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:56:57,0,56 0/1:5,1:6:21:21,0,152 0/0:6,0:6:12:0,12,157 0/1:3,1:4:30:30,0,81 +chr8 17612456 rs11203910 C T 5979.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.759;DB;DP=213;Dels=0.00;FS=4.309;HaplotypeScore=6.0861;MLEAC=5;MLEAF=0.625;MQ=35.60;MQ0=0;MQRankSum=-1.823;QD=28.07;ReadPosRankSum=7.070;SB=-2.975e+03 GT:AD:DP:GQ:PL 0/1:14,49:63:99:1712,0,131 0/1:11,39:50:82:1332,0,82 1/1:11,55:66:99:2018,99,0 0/1:5,28:33:23:917,0,23 +chr8 17797403 . T G 108.78 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.586;DP=55;Dels=0.00;FS=12.039;HaplotypeScore=4.1467;MLEAC=2;MLEAF=0.333;MQ=28.74;MQ0=0;MQRankSum=-1.605;QD=2.65;ReadPosRankSum=2.064;SB=3.45 GT:AD:DP:GQ:PL 0/0:12,0:12:9:0,9,98 0/1:19,4:23:75:75,0,267 0/1:15,3:18:72:72,0,231 ./. +chr8 17919031 rs61108931 C T 256.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.242;DB;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.3893;MLEAC=3;MLEAF=0.375;MQ=39.67;MQ0=0;MQRankSum=-3.802;QD=7.12;ReadPosRankSum=-1.433;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:25,0:25:75:0,75,1049 0/1:9,6:15:99:177,0,286 0/1:13,4:17:99:110,0,387 0/1:3,1:4:12:12,0,117 +chr8 17945990 rs4921847 T G 133.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=5.737;DB;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.8071;MLEAC=3;MLEAF=0.375;MQ=17.95;MQ0=0;MQRankSum=-2.119;QD=1.84;ReadPosRankSum=-0.311;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:15:0,15,129 0/1:20,11:31:25:25,0,109 0/1:17,11:28:64:64,0,100 0/1:7,7:14:46:88,0,46 +chr8 18228291 rs2898473 C A 30.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=22.41;MQ0=0;MQRankSum=0.736;QD=7.50;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:28,3,0 ./. ./. 1/1:0,1:1:3:35,3,0 +chr8 18240800 rs59416053 G C 122.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.185;DB;DP=69;Dels=0.00;FS=4.775;HaplotypeScore=1.3206;MLEAC=2;MLEAF=0.250;MQ=21.70;MQ0=0;MQRankSum=3.240;QD=4.22;ReadPosRankSum=-0.012;SB=0.038 GT:AD:DP:GQ:PL 0/0:19,0:19:6:0,6,68 0/1:14,4:18:94:138,0,94 0/0:21,0:21:18:0,18,172 0/1:9,2:11:25:25,0,25 +chr8 18432578 rs2248559 C G 811.34 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.533;DB;DP=46;Dels=0.04;FS=11.139;HaplotypeScore=3.0103;MLEAC=8;MLEAF=1.00;MQ=27.51;MQ0=0;MQRankSum=1.467;QD=17.64;ReadPosRankSum=1.600;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,6:8:15:188,15,0 1/1:11,8:20:21:246,21,0 1/1:4,9:13:27:336,27,0 1/1:1,2:3:6:80,6,0 +chr8 18432924 rs1546002 C T 40.93 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.322;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=19.81;MQ0=0;MQRankSum=0.322;QD=13.64;ReadPosRankSum=0.322;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:9:80,9,0 0/0:1,0:1:3:0,3,32 0/0:4,0:4:6:0,6,64 ./. +chr8 18859494 . C G 31.32 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.386;DP=14;Dels=0.00;FS=3.233;HaplotypeScore=1.2145;MLEAC=3;MLEAF=0.500;MQ=27.55;MQ0=0;MQRankSum=-0.296;QD=3.48;ReadPosRankSum=-0.296;SB=0.950 GT:AD:DP:GQ:PL 0/1:5,2:7:46:46,0,111 0/0:4,0:4:6:0,6,64 ./. 1/1:1,1:2:3:24,3,0 +chr8 19677184 . A C 113.24 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.223;DP=47;Dels=0.02;FS=5.395;HaplotypeScore=7.2231;MLEAC=3;MLEAF=0.500;MQ=24.86;MQ0=0;MQRankSum=1.813;QD=2.76;ReadPosRankSum=0.541;SB=31.09 GT:AD:DP:GQ:PL 0/1:7,1:8:18:18,0,107 0/1:12,1:13:23:23,0,72 0/1:15,4:19:98:110,0,98 ./. +chr8 20004433 . G C 98.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.747;DP=82;Dels=0.00;FS=96.245;HaplotypeScore=5.1546;MLEAC=4;MLEAF=0.500;MQ=33.60;MQ0=0;MQRankSum=-2.115;QD=1.21;ReadPosRankSum=-0.666;SB=-9.622e-01 GT:AD:DP:GQ:PL 0/1:16,3:19:45:45,0,317 0/1:26,3:29:33:33,0,685 0/1:20,3:25:53:53,0,518 0/1:6,2:9:10:10,0,106 +chr8 20005205 . G T 266.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.932;DP=57;Dels=0.04;FS=48.472;HaplotypeScore=3.6457;MLEAC=4;MLEAF=0.500;MQ=29.31;MQ0=0;MQRankSum=-0.699;QD=4.67;ReadPosRankSum=1.458;SB=-3.029e+00 GT:AD:DP:GQ:PL 0/1:4,5:9:99:138,0,99 0/1:7,2:9:6:6,0,192 0/1:23,3:26:65:65,0,352 0/1:5,6:11:49:99,0,49 +chr8 20068619 rs9325865 A G 830.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.576;DB;DP=95;Dels=0.00;FS=8.124;HaplotypeScore=2.1396;MLEAC=4;MLEAF=0.500;MQ=29.09;MQ0=0;MQRankSum=0.050;QD=8.74;ReadPosRankSum=0.294;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,15:25:99:380,0,190 0/1:24,10:34:99:215,0,712 0/1:15,7:22:99:116,0,403 0/1:9,5:14:40:162,0,40 +chr8 20069655 . G A 106.77 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.572;DP=65;Dels=0.03;FS=5.082;HaplotypeScore=9.9078;MLEAC=5;MLEAF=0.625;MQ=19.66;MQ0=0;MQRankSum=2.235;QD=1.64;ReadPosRankSum=-0.745;SB=-3.964e-03 GT:AD:DP:GQ:PL 0/1:14,1:15:12:12,0,120 0/1:20,3:24:50:63,0,50 0/1:15,2:18:45:45,0,53 1/1:5,1:6:3:29,3,0 +chr8 20110244 . G T 35.03 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.080;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4392;MLEAC=2;MLEAF=0.250;MQ=33.07;MQ0=0;MQRankSum=-1.682;QD=1.52;ReadPosRankSum=0.176;SB=-2.325e+01 GT:AD:DP:GQ:PL 0/1:6,3:9:60:60,0,108 0/1:12,2:14:16:16,0,214 0/0:12,0:12:15:0,15,171 0/0:13,0:13:21:0,21,240 +chr8 21883120 . C T 158.40 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.143;DP=156;Dels=0.00;FS=18.948;HaplotypeScore=5.3164;MLEAC=2;MLEAF=0.250;MQ=31.19;MQ0=0;MQRankSum=-1.498;QD=2.44;ReadPosRankSum=0.813;SB=-1.731e+00 GT:AD:DP:GQ:PL 0/0:51,3:54:37:0,37,1368 0/0:34,3:37:1:0,1,803 0/1:31,4:36:36:36,0,760 0/1:22,7:29:99:162,0,482 +chr8 21956369 . A T 245.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.043;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=7.2315;MLEAC=4;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=0.718;QD=2.27;ReadPosRankSum=0.361;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,5:24:99:115,0,455 0/1:18,5:23:76:76,0,298 0/1:31,4:35:78:78,0,571 0/1:23,2:25:19:19,0,357 +chr8 21957312 . C G 138.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.344;DP=108;Dels=0.00;FS=58.827;HaplotypeScore=6.4827;MLEAC=3;MLEAF=0.375;MQ=27.50;MQ0=0;MQRankSum=-2.333;QD=1.87;ReadPosRankSum=-0.129;SB=-2.529e+00 GT:AD:DP:GQ:PL 0/1:15,5:20:99:119,0,256 0/1:22,5:27:50:50,0,332 0/0:30,3:34:4:0,4,613 0/1:24,3:27:10:10,0,459 +chr8 21978578 rs58080661 A G 307.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.677;DB;DP=98;Dels=0.00;FS=7.077;HaplotypeScore=3.9460;MLEAC=3;MLEAF=0.375;MQ=26.06;MQ0=0;MQRankSum=-1.129;QD=3.95;ReadPosRankSum=0.958;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/0:20,0:20:54:0,54,579 0/1:19,6:26:99:99,0,338 0/1:18,6:24:99:107,0,236 0/1:16,10:28:99:145,0,226 +chr8 21980090 . C A 112.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.239;DP=40;Dels=0.00;FS=14.647;HaplotypeScore=2.5806;MLEAC=4;MLEAF=0.500;MQ=29.31;MQ0=0;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-0.680;SB=-1.883e-01 GT:AD:DP:GQ:PL 0/1:6,3:9:79:79,0,165 0/1:12,1:13:13:13,0,227 0/1:5,1:7:27:27,0,91 0/1:9,2:11:36:36,0,209 +chr8 22020066 rs13248346 T C 637.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.128;DB;DP=90;Dels=0.01;FS=11.145;HaplotypeScore=1.9064;MLEAC=4;MLEAF=0.500;MQ=29.57;MQ0=0;MQRankSum=-2.673;QD=7.08;ReadPosRankSum=1.176;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,5:17:99:123,0,223 0/1:16,11:27:99:246,0,320 0/1:17,6:23:99:131,0,332 0/1:15,7:22:99:180,0,341 +chr8 22056435 rs116891912 C T 30.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.92;MQ0=0;MQRankSum=0.736;QD=7.69;ReadPosRankSum=0.736;SB=-2.176e+01 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:2,2:4:6:62,6,0 +chr8 22211756 rs66554545 T A 2001.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.321;DB;DP=107;Dels=0.00;FS=7.981;HaplotypeScore=4.1396;MLEAC=5;MLEAF=0.625;MQ=35.99;MQ0=0;MQRankSum=-3.768;QD=18.71;ReadPosRankSum=1.734;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,10:23:99:331,0,404 1/1:1,28:29:81:990,81,0 0/1:23,14:37:99:448,0,612 0/1:9,9:18:99:278,0,281 +chr8 22421355 rs2449336 A G 154.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.026;DB;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.4833;MLEAC=3;MLEAF=0.375;MQ=30.50;MQ0=0;MQRankSum=-1.363;QD=6.74;ReadPosRankSum=-2.032;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:15:0,15,196 0/1:4,3:7:77:77,0,103 0/1:5,2:7:44:44,0,101 0/1:5,4:9:77:77,0,115 +chr8 22481660 . T G 272.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.047;DP=124;Dels=0.02;FS=35.692;HaplotypeScore=8.5174;MLEAC=3;MLEAF=0.375;MQ=21.97;MQ0=0;MQRankSum=1.316;QD=2.65;ReadPosRankSum=1.764;SB=-1.445e+01 GT:AD:DP:GQ:PL 0/1:23,5:28:99:100,0,195 0/1:41,6:48:99:122,0,298 0/0:21,0:21:18:0,18,174 0/1:17,7:24:91:94,0,91 +chr8 22887130 . G T 67.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.666;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=1.9553;MLEAC=2;MLEAF=0.250;MQ=27.96;MQ0=0;MQRankSum=0.389;QD=1.74;ReadPosRankSum=-1.647;SB=-1.328e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:24:0,24,239 0/1:13,3:16:37:37,0,299 0/1:19,4:23:72:72,0,359 0/0:17,1:18:10:0,10,429 +chr8 22969290 . G T 53.42 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.756;DP=89;Dels=0.01;FS=15.233;HaplotypeScore=3.4032;MLEAC=3;MLEAF=0.375;MQ=21.14;MQ0=0;MQRankSum=2.358;QD=1.07;ReadPosRankSum=-1.023;SB=25.27 GT:AD:DP:GQ:PL 0/0:22,0:22:9:0,9,86 0/1:26,1:27:16:34,0,16 1/1:20,2:22:6:63,6,0 0/0:16,0:17:6:0,6,57 +chr8 23114165 . A C 81.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.200;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.1580;MLEAC=3;MLEAF=0.375;MQ=20.62;MQ0=0;MQRankSum=2.602;QD=0.63;ReadPosRankSum=-2.780;SB=10.99 GT:AD:DP:GQ:PL 0/0:40,0:41:9:0,9,78 0/1:44,2:46:37:37,0,75 0/1:41,4:46:78:78,0,100 0/1:35,1:36:8:8,0,100 +chr8 23118155 rs9828 T C 2889.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.170;DB;DP=157;Dels=0.00;FS=8.217;HaplotypeScore=1.7658;MLEAC=5;MLEAF=0.625;MQ=36.09;MQ0=0;MQRankSum=-7.465;QD=18.40;ReadPosRankSum=1.761;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,35:39:99:1318,105,0 0/1:21,21:42:99:655,0,502 0/1:29,22:51:99:621,0,947 0/1:14,11:25:99:341,0,411 +chr8 23626151 rs28510402 T A 82.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.120;DB;DP=172;Dels=0.01;FS=4.436;HaplotypeScore=13.2960;MLEAC=1;MLEAF=0.125;MQ=30.08;MQ0=0;MQRankSum=-1.723;QD=2.02;ReadPosRankSum=1.286;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/1:29,10:39:99:119,0,728 0/0:50,0:51:96:0,96,1034 0/0:50,0:51:99:0,117,1305 0/0:28,0:29:54:0,54,604 +chr8 24197103 . T A 243.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.311;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7836;MLEAC=4;MLEAF=0.500;MQ=31.31;MQ0=0;MQRankSum=1.367;QD=4.20;ReadPosRankSum=2.911;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:60:60,0,109 0/1:10,3:13:60:60,0,115 0/1:15,5:20:99:119,0,228 0/1:10,2:12:47:47,0,102 +chr8 24256564 . G A 34.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.636;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.6881;MLEAC=3;MLEAF=0.375;MQ=30.51;MQ0=0;MQRankSum=-0.777;QD=0.81;ReadPosRankSum=-0.532;SB=-1.396e+01 GT:AD:DP:GQ:PL 0/1:12,2:14:19:19,0,260 0/0:16,0:16:18:0,18,231 0/1:16,2:18:44:44,0,246 0/1:9,1:10:14:14,0,164 +chr8 24324421 . A C 544.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.860;DP=185;Dels=0.01;FS=142.404;HaplotypeScore=2.7361;MLEAC=4;MLEAF=0.500;MQ=37.97;MQ0=0;MQRankSum=-1.400;QD=2.94;ReadPosRankSum=4.233;SB=-1.193e-02 GT:AD:DP:GQ:PL 0/1:41,9:50:99:209,0,918 0/1:52,10:62:99:174,0,1430 0/1:45,8:54:99:159,0,1103 0/1:15,3:18:45:45,0,333 +chr8 24772246 . A G 136.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.008;DP=91;Dels=0.00;FS=9.436;HaplotypeScore=2.2312;MLEAC=4;MLEAF=0.500;MQ=34.26;MQ0=0;MQRankSum=-2.014;QD=1.50;ReadPosRankSum=-0.675;SB=-5.015e-02 GT:AD:DP:GQ:PL 0/1:22,4:26:54:54,0,680 0/1:26,3:29:21:21,0,686 0/1:14,4:18:82:82,0,364 0/1:16,2:18:22:22,0,380 +chr8 24773106 . T A 650.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.344;DP=171;Dels=0.01;FS=51.136;HaplotypeScore=6.5617;MLEAC=4;MLEAF=0.500;MQ=29.45;MQ0=0;MQRankSum=0.514;QD=3.80;ReadPosRankSum=1.298;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:38,15:53:99:325,0,683 0/1:34,4:38:67:67,0,546 0/1:29,7:36:99:159,0,386 0/1:35,7:42:99:142,0,599 +chr8 25126330 . A T 176.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.678;DP=50;Dels=0.00;FS=5.787;HaplotypeScore=12.6260;MLEAC=3;MLEAF=0.375;MQ=22.16;MQ0=0;MQRankSum=1.130;QD=3.85;ReadPosRankSum=-0.678;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:43:43,0,87 0/1:13,4:18:25:104,0,25 0/1:13,3:16:15:72,0,15 0/0:4,0:4:6:0,6,58 +chr8 25200148 rs10110351 A G 683.50 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.679;DB;DP=26;Dels=0.04;FS=14.241;HaplotypeScore=1.1699;MLEAC=8;MLEAF=1.00;MQ=34.04;MQ0=0;MQRankSum=2.487;QD=26.29;ReadPosRankSum=0.670;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,8:10:24:325,24,0 1/1:1,4:5:9:124,9,0 1/1:0,5:5:15:193,15,0 1/1:3,2:5:6:80,6,0 +chr8 25216535 . T C 173.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.242;DP=200;Dels=0.03;FS=188.099;HaplotypeScore=26.4437;MLEAC=3;MLEAF=0.375;MQ=33.77;MQ0=0;MQRankSum=-7.128;QD=1.27;ReadPosRankSum=3.702;SB=0.770 GT:AD:DP:GQ:PL 0/1:36,8:45:91:91,0,934 0/1:38,11:49:28:28,0,1154 0/0:55,7:62:80:0,80,1583 0/1:30,7:38:98:98,0,913 +chr8 25718872 . C G 61.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.074;DP=88;Dels=0.03;FS=4.915;HaplotypeScore=17.3237;MLEAC=2;MLEAF=0.250;MQ=30.86;MQ0=0;MQRankSum=-1.552;QD=1.50;ReadPosRankSum=-1.847;SB=4.719e-03 GT:AD:DP:GQ:PL 0/0:24,0:24:42:0,42,506 0/1:24,4:29:60:60,0,438 0/0:20,0:20:42:0,42,514 0/1:10,2:12:43:43,0,177 +chr8 26291436 rs12164179 A G 1517.45 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.318;DB;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.4730;MLEAC=8;MLEAF=1.00;MQ=28.01;MQ0=0;MQRankSum=1.921;QD=24.88;ReadPosRankSum=0.640;SB=-4.688e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:30:314,30,0 1/1:5,11:16:4:243,4,0 1/1:2,20:22:35:563,35,0 1/1:0,13:13:39:436,39,0 +chr8 26484791 . A T 106.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.023;DP=119;Dels=0.01;FS=6.961;HaplotypeScore=2.6624;MLEAC=2;MLEAF=0.250;MQ=36.66;MQ0=0;MQRankSum=-2.307;QD=1.69;ReadPosRankSum=-1.038;SB=5.566e-03 GT:AD:DP:GQ:PL 0/0:38,1:39:59:0,59,1128 0/1:24,4:28:63:63,0,679 0/1:29,5:34:85:85,0,663 0/0:17,0:17:27:0,27,351 +chr8 27094548 rs10217008 A G 1090.02 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.292;DB;DP=33;Dels=0.00;FS=26.675;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=35.21;MQ0=0;MQRankSum=2.292;QD=33.03;ReadPosRankSum=-0.121;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,6:7:18:224,18,0 1/1:1,8:9:24:305,24,0 1/1:1,8:9:24:326,24,0 1/1:1,7:8:21:274,21,0 +chr8 27162141 . A C 44.12 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.186;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=3.6808;MLEAC=1;MLEAF=0.125;MQ=30.59;MQ0=0;MQRankSum=-0.366;QD=2.21;ReadPosRankSum=2.035;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:80:80,0,203 0/0:15,0:15:27:0,27,292 0/0:16,1:17:10:0,10,337 0/0:23,0:23:45:0,45,495 +chr8 27308849 rs2251430 A G 207.89 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.666;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=26.99;MQ0=0;MQRankSum=1.666;QD=20.79;ReadPosRankSum=-1.666;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:38,3,0 1/1:2,2:4:6:71,6,0 1/1:0,3:3:9:103,9,0 1/1:1,1:2:3:33,3,0 +chr8 27327270 . A T 96.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.644;DP=95;Dels=0.02;FS=4.666;HaplotypeScore=9.2320;MLEAC=3;MLEAF=0.375;MQ=29.39;MQ0=0;MQRankSum=-1.600;QD=1.36;ReadPosRankSum=0.155;SB=-1.799e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:42:0,42,507 0/1:17,4:21:72:72,0,280 0/1:18,3:21:42:42,0,403 0/1:24,3:27:26:26,0,470 +chr8 27373923 rs4149243 T C 2703.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.988;DB;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=0.9830;MLEAC=4;MLEAF=0.500;MQ=37.47;MQ0=0;MQRankSum=-0.840;QD=12.87;ReadPosRankSum=3.225;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:29,24:53:99:741,0,979 0/1:31,22:53:99:707,0,1024 0/1:30,26:56:99:871,0,988 0/1:34,14:48:99:427,0,1049 +chr8 27472069 . A T 38.94 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.277;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=5.0307;MLEAC=4;MLEAF=0.500;MQ=30.00;MQ0=0;MQRankSum=0.310;QD=0.49;ReadPosRankSum=-0.114;SB=-9.876e-01 GT:AD:DP:GQ:PL 0/1:15,1:16:15:15,0,169 0/1:20,1:21:1:1,0,199 0/1:19,2:21:31:31,0,253 0/1:19,2:21:32:32,0,230 +chr8 27516059 . G C 40 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.503;DP=267;Dels=0.00;FS=108.233;HaplotypeScore=9.2973;MLEAC=1;MLEAF=0.125;MQ=30.75;MQ0=0;MQRankSum=-0.399;QD=0.66;ReadPosRankSum=-1.478;SB=-6.392e+00 GT:AD:DP:GQ:PL 0/0:55,4:59:45:0,45,1250 0/0:56,4:60:23:0,23,1309 0/0:84,3:87:99:0,146,2350 0/1:55,6:61:76:76,0,1182 +chr8 27619882 . G A 54.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.284;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.5645;MLEAC=3;MLEAF=0.375;MQ=28.91;MQ0=0;MQRankSum=-1.377;QD=1.89;ReadPosRankSum=2.264;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:46:46,0,185 0/1:11,2:13:26:26,0,187 0/0:12,0:12:18:0,18,238 0/1:5,2:7:26:26,0,65 +chr8 27927202 . A T 96.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.894;DP=117;Dels=0.00;FS=6.010;HaplotypeScore=15.3892;MLEAC=3;MLEAF=0.375;MQ=28.33;MQ0=0;MQRankSum=0.285;QD=1.14;ReadPosRankSum=1.031;SB=-9.755e+00 GT:AD:DP:GQ:PL 0/0:31,1:32:14:0,14,366 0/1:33,3:36:52:52,0,374 0/1:33,3:36:46:46,0,395 0/1:11,2:13:42:42,0,79 +chr8 27995371 . C A 141.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.007;DP=86;Dels=0.00;FS=10.373;HaplotypeScore=10.7217;MLEAC=4;MLEAF=0.500;MQ=31.45;MQ0=0;MQRankSum=-2.492;QD=1.65;ReadPosRankSum=2.814;SB=0.015 GT:AD:DP:GQ:PL 0/1:22,4:26:66:66,0,324 0/1:18,4:23:18:18,0,334 0/1:21,2:23:23:23,0,305 0/1:10,4:14:55:77,0,55 +chr8 28208910 . A C 103.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.409;DP=68;Dels=0.00;FS=2.532;HaplotypeScore=6.2495;MLEAC=4;MLEAF=0.500;MQ=26.58;MQ0=0;MQRankSum=-0.409;QD=1.53;ReadPosRankSum=2.311;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:34:47,0,34 0/1:13,3:16:13:13,0,73 0/1:20,2:22:29:29,0,236 0/1:9,4:13:57:57,0,164 +chr8 28378369 . T G 146.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.614;DP=70;Dels=0.03;FS=0.000;HaplotypeScore=25.1018;MLEAC=4;MLEAF=0.500;MQ=24.21;MQ0=0;MQRankSum=0.989;QD=2.09;ReadPosRankSum=-0.088;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,5:15:58:58,0,95 0/1:15,4:19:63:109,0,63 0/1:16,1:18:7:7,0,159 0/1:13,3:16:14:14,0,37 +chr8 28575244 . T G 51.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.940;DP=119;Dels=0.01;FS=82.366;HaplotypeScore=4.2891;MLEAC=2;MLEAF=0.250;MQ=31.44;MQ0=0;MQRankSum=-1.562;QD=0.77;ReadPosRankSum=-0.373;SB=-9.333e-01 GT:AD:DP:GQ:PL 0/0:23,1:24:33:0,33,724 0/0:27,1:28:20:0,20,563 0/1:29,4:34:57:57,0,602 0/1:28,4:32:36:36,0,559 +chr8 28707628 . A G 30.87 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.086;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=12.5646;MLEAC=2;MLEAF=0.250;MQ=23.94;MQ0=0;MQRankSum=1.610;QD=0.86;ReadPosRankSum=-2.028;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,0:21:24:0,24,241 0/1:24,3:27:61:61,0,176 0/0:28,0:29:39:0,39,368 0/1:8,1:9:10:10,0,107 +chr8 28906669 . C A 177.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.271;DP=106;Dels=0.01;FS=23.812;HaplotypeScore=4.1102;MLEAC=4;MLEAF=0.500;MQ=30.19;MQ0=0;MQRankSum=-4.034;QD=1.68;ReadPosRankSum=1.877;SB=-9.092e-01 GT:AD:DP:GQ:PL 0/1:16,8:24:99:112,0,366 0/1:28,6:34:4:4,0,475 0/1:24,4:28:37:37,0,545 0/1:14,5:19:66:66,0,244 +chr8 28967679 rs3736225 C T 98.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.045;DB;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7027;MLEAC=4;MLEAF=0.500;MQ=26.49;MQ0=0;MQRankSum=-2.353;QD=1.90;ReadPosRankSum=-1.136;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,6:17:75:75,0,246 0/1:12,1:13:7:7,0,225 0/1:16,6:22:56:56,0,317 0/0:11,1:12:1:0,1,218 +chr8 29062208 . A C 53.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.861;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.1987;MLEAC=3;MLEAF=0.375;MQ=27.82;MQ0=0;MQRankSum=-0.799;QD=1.09;ReadPosRankSum=1.581;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:27:0,27,298 0/1:15,3:18:52:52,0,267 0/1:15,3:18:34:34,0,150 0/1:12,1:13:10:10,0,62 +chr8 30332236 . G C 119.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.399;DP=109;Dels=0.02;FS=0.000;HaplotypeScore=19.1729;MLEAC=4;MLEAF=0.500;MQ=24.89;MQ0=0;MQRankSum=-0.454;QD=1.10;ReadPosRankSum=-0.241;SB=5.98 GT:AD:DP:GQ:PL 0/1:27,2:31:6:6,0,142 0/1:25,5:31:69:69,0,153 0/1:26,4:30:33:33,0,122 0/1:12,3:15:53:53,0,183 +chr8 30703520 . T G 130.14 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.580;DP=215;Dels=0.00;FS=31.922;HaplotypeScore=6.1998;MLEAC=1;MLEAF=0.125;MQ=35.27;MQ0=0;MQRankSum=-1.078;QD=2.21;ReadPosRankSum=2.410;SB=1.25 GT:AD:DP:GQ:PL 0/0:66,2:68:70:0,70,1579 0/0:74,2:76:99:0,109,1735 0/1:50,9:59:99:166,0,1177 0/0:12,0:12:9:0,9,114 +chr8 30889972 . C G 276.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.598;DP=134;Dels=0.00;FS=45.295;HaplotypeScore=17.1006;MLEAC=3;MLEAF=0.375;MQ=25.00;MQ0=0;MQRankSum=0.225;QD=2.94;ReadPosRankSum=0.668;SB=0.054 GT:AD:DP:GQ:PL 0/1:21,6:27:88:88,0,274 0/0:35,4:40:66:0,66,673 0/1:30,8:38:99:128,0,546 0/1:24,5:29:99:104,0,128 +chr8 30947951 . C T 99.05 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.357;DP=106;Dels=0.01;FS=4.901;HaplotypeScore=2.8664;MLEAC=4;MLEAF=0.500;MQ=30.86;MQ0=0;MQRankSum=-3.418;QD=0.93;ReadPosRankSum=-2.600;SB=-1.185e-02 GT:AD:DP:GQ:PL 0/1:29,2:31:15:15,0,490 0/1:26,5:31:10:10,0,657 0/1:28,5:33:48:48,0,621 0/1:7,3:10:56:68,0,56 +chr8 30948496 . T G 119.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.588;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.9327;MLEAC=2;MLEAF=0.250;MQ=28.94;MQ0=0;MQRankSum=-0.863;QD=1.46;ReadPosRankSum=0.250;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,8:40:99:146,0,661 0/0:36,2:39:12:0,12,736 0/1:38,4:42:14:14,0,776 0/0:10,0:10:9:0,9,95 +chr8 31001190 . T C 36.65 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.345;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.8229;MLEAC=1;MLEAF=0.125;MQ=28.31;MQ0=0;MQRankSum=-0.957;QD=1.15;ReadPosRankSum=1.723;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,4:32:72:72,0,226 0/0:26,2:29:13:0,13,311 0/0:24,0:25:33:0,33,340 0/0:8,0:9:3:0,3,41 +chr8 31004727 . C G 34.63 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.376;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=2.0744;MLEAC=3;MLEAF=0.375;MQ=28.59;MQ0=0;MQRankSum=-2.304;QD=0.62;ReadPosRankSum=1.840;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,2:21:8:8,0,483 0/1:14,4:18:30:30,0,253 0/1:14,2:16:37:37,0,239 0/0:4,0:4:3:0,3,43 +chr8 31077434 . T G 60.68 . AC=3;AF=0.500;AN=6;BaseQRankSum=-3.669;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.4663;MLEAC=4;MLEAF=0.667;MQ=10.83;MQ0=0;MQRankSum=2.792;QD=1.24;ReadPosRankSum=3.786;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:22,3:25:9:79,9,0 ./. 0/1:23,1:24:22:22,0,37 0/0:9,2:11:3:0,3,28 +chr8 33354872 rs68152666 AC A 285.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.453;DB;DP=48;FS=0.000;HaplotypeScore=0.9064;MLEAC=5;MLEAF=0.625;MQ=17.28;MQ0=0;MQRankSum=-3.172;QD=6.64;ReadPosRankSum=0.566;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:6,7:7:21:242,21,0 0/1:15,4:5:37:45,0,37 0/1:11,0:4:53:53,0,53 0/0:4,1:1:3:0,3,39 +chr8 33356206 . T G 44.33 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.646;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.0283;MLEAC=3;MLEAF=0.500;MQ=21.45;MQ0=0;MQRankSum=0.584;QD=1.58;ReadPosRankSum=-1.540;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:22:22,0,54 0/1:13,2:15:37:37,0,84 0/1:7,1:8:19:24,0,19 ./. +chr8 33407007 . T A 385.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.774;DP=90;Dels=0.00;FS=5.101;HaplotypeScore=7.9026;MLEAC=4;MLEAF=0.500;MQ=26.85;MQ0=0;MQRankSum=0.514;QD=4.28;ReadPosRankSum=3.103;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,7:19:99:155,0,158 0/1:15,4:20:99:104,0,129 0/1:21,3:24:52:52,0,263 0/1:21,6:27:99:117,0,181 +chr8 33416189 rs3735950 G A 1359.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.639;DB;DP=137;Dels=0.00;FS=3.106;HaplotypeScore=0.9778;MLEAC=5;MLEAF=0.625;MQ=35.69;MQ0=0;MQRankSum=0.514;QD=9.92;ReadPosRankSum=1.358;SB=-2.709e+02 GT:AD:DP:GQ:PL 1/1:3,19:22:31:699,31,0 0/1:24,10:34:99:316,0,642 0/1:29,11:40:99:304,0,812 0/1:35,6:41:86:86,0,1027 +chr8 35584021 . G C 232.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.712;DP=202;Dels=0.00;FS=93.846;HaplotypeScore=13.8878;MLEAC=3;MLEAF=0.375;MQ=30.91;MQ0=0;MQRankSum=-4.710;QD=1.67;ReadPosRankSum=2.484;SB=1.61 GT:AD:DP:GQ:PL 0/1:36,8:44:97:97,0,748 0/0:56,6:63:54:0,54,1080 0/1:48,7:55:75:75,0,804 0/1:31,8:39:99:104,0,652 +chr8 36767024 rs28608091 T C 1542.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.341;DB;DP=321;Dels=0.00;FS=4.554;HaplotypeScore=3.3901;MLEAC=3;MLEAF=0.375;MQ=39.09;MQ0=0;MQRankSum=-2.264;QD=7.24;ReadPosRankSum=2.697;SB=-4.090e+02 GT:AD:DP:GQ:PL 0/0:108,0:108:99:0,301,3972 0/1:64,18:82:99:509,0,1980 0/1:60,26:86:99:773,0,1799 0/1:34,11:45:99:304,0,1003 +chr8 37602013 rs4739537 A G 109.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.637;DB;DP=325;Dels=0.00;FS=38.509;HaplotypeScore=7.9184;MLEAC=2;MLEAF=0.250;MQ=34.97;MQ0=0;MQRankSum=-3.291;QD=0.71;ReadPosRankSum=0.046;SB=-1.773e+00 GT:AD:DP:GQ:PL 0/0:85,5:91:48:0,48,2178 0/0:77,3:80:99:0,159,2146 0/1:78,10:88:99:105,0,2065 0/1:60,6:66:46:46,0,1113 +chr8 37611150 . A G 125.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.235;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7263;MLEAC=3;MLEAF=0.375;MQ=35.80;MQ0=0;MQRankSum=-0.790;QD=3.30;ReadPosRankSum=-0.700;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:13:13,0,229 0/1:9,3:12:73:73,0,221 0/1:12,4:16:81:81,0,214 0/0:4,0:4:6:0,6,66 +chr8 37734993 . T A 58.88 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.709;DP=183;Dels=0.00;FS=67.715;HaplotypeScore=5.4285;MLEAC=2;MLEAF=0.250;MQ=19.18;MQ0=0;MQRankSum=2.504;QD=0.59;ReadPosRankSum=-0.761;SB=1.49 GT:AD:DP:GQ:PL 0/1:43,5:48:89:89,0,281 0/1:50,2:52:10:10,0,302 0/0:52,3:56:23:0,23,472 0/0:26,0:27:24:0,24,223 +chr8 37793453 . T A 107.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.751;DP=110;Dels=0.02;FS=0.000;HaplotypeScore=8.6204;MLEAC=3;MLEAF=0.375;MQ=26.63;MQ0=0;MQRankSum=-1.854;QD=1.28;ReadPosRankSum=1.410;SB=-1.592e-02 GT:AD:DP:GQ:PL 0/1:24,5:29:29:29,0,370 0/1:23,4:27:68:68,0,404 0/1:24,4:28:54:54,0,405 0/0:23,1:24:33:0,33,370 +chr8 38003787 rs2720050 T C 1884.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.041;DB;DP=128;Dels=0.05;FS=1.797;HaplotypeScore=2.4399;MLEAC=5;MLEAF=0.625;MQ=33.27;MQ0=0;MQRankSum=-3.555;QD=14.72;ReadPosRankSum=1.122;SB=-3.900e+02 GT:AD:DP:GQ:PL 0/1:15,13:28:99:344,0,446 1/1:0,29:30:87:1043,87,0 0/1:23,11:34:99:301,0,576 0/1:20,10:30:99:242,0,372 +chr8 38173426 . T G 190.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.711;DP=134;Dels=0.01;FS=5.371;HaplotypeScore=1.3456;MLEAC=4;MLEAF=0.500;MQ=34.92;MQ0=0;MQRankSum=-1.232;QD=1.42;ReadPosRankSum=0.504;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:30,3:33:17:17,0,659 0/1:32,5:37:99:104,0,591 0/1:43,4:47:48:48,0,809 0/1:12,3:15:64:64,0,153 +chr8 38826290 rs6996274 G A 782.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.783;DB;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.2328;MLEAC=4;MLEAF=0.500;MQ=39.69;MQ0=0;MQRankSum=-2.992;QD=17.39;ReadPosRankSum=0.608;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,0:28:78:0,78,1092 1/1:1,12:13:36:483,36,0 0/1:10,6:16:99:191,0,358 0/1:11,5:16:99:157,0,307 +chr8 38840591 rs7814264 C T 107.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.724;DB;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7232;MLEAC=1;MLEAF=0.125;MQ=29.11;MQ0=0;MQRankSum=-1.072;QD=7.14;ReadPosRankSum=-0.563;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,7:15:99:143,0,211 0/0:19,0:19:45:0,45,503 0/0:18,0:18:36:0,36,405 0/0:4,0:4:12:0,12,112 +chr8 38899396 . G C 142.65 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.513;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=3.5629;MLEAC=6;MLEAF=0.750;MQ=21.08;MQ0=0;MQRankSum=1.610;QD=4.08;ReadPosRankSum=0.342;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,3:7:9:97,9,0 0/1:14,1:15:14:14,0,56 0/1:8,2:10:47:47,0,69 1/1:1,1:2:3:28,3,0 +chr8 39008838 . G A 70.76 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.064;DP=99;Dels=0.04;FS=0.000;HaplotypeScore=3.8154;MLEAC=2;MLEAF=0.250;MQ=26.24;MQ0=0;MQRankSum=-3.540;QD=1.22;ReadPosRankSum=2.044;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,5:26:57:57,0,366 0/0:23,4:27:14:0,14,565 0/1:22,7:29:55:55,0,381 0/0:12,1:13:15:0,15,175 +chr8 39022475 rs186536952 A C 35.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.493;DB;DP=115;Dels=0.00;FS=4.633;HaplotypeScore=13.3072;MLEAC=2;MLEAF=0.250;MQ=28.61;MQ0=0;MQRankSum=-0.524;QD=0.50;ReadPosRankSum=1.602;SB=-1.182e+00 GT:AD:DP:GQ:PL 0/0:31,0:31:42:0,42,485 0/1:29,5:34:66:66,0,331 0/1:34,3:38:10:10,0,653 0/0:12,0:12:24:0,24,274 +chr8 39022884 rs10110383 T A 336.22 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.155;DB;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.2416;MLEAC=2;MLEAF=0.250;MQ=33.39;MQ0=0;MQRankSum=-2.378;QD=9.34;ReadPosRankSum=1.293;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,10:21:99:289,0,226 0/0:21,0:21:48:0,48,598 0/1:11,4:15:88:88,0,335 0/0:2,0:2:6:0,6,85 +chr8 39251030 rs12546694 G A 54.67 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.322;DB;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.6243;MLEAC=3;MLEAF=0.500;MQ=18.60;MQ0=0;MQRankSum=1.221;QD=9.11;ReadPosRankSum=0.322;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,28 1/1:3,3:6:9:93,9,0 0/0:1,0:2:3:0,3,30 ./. +chr8 39606956 . T A 158.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.432;DP=161;Dels=0.00;FS=24.631;HaplotypeScore=1.2231;MLEAC=4;MLEAF=0.500;MQ=35.57;MQ0=0;MQRankSum=-1.239;QD=0.98;ReadPosRankSum=-1.011;SB=-1.524e+00 GT:AD:DP:GQ:PL 0/1:44,4:48:93:93,0,429 0/1:43,2:45:3:3,0,682 0/1:44,3:47:31:31,0,761 0/1:18,3:21:72:72,0,208 +chr8 39842405 rs62513785 G C 181.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.717;DB;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.4338;MLEAC=3;MLEAF=0.375;MQ=36.85;MQ0=0;MQRankSum=-2.732;QD=5.87;ReadPosRankSum=1.388;SB=-6.895e+01 GT:AD:DP:GQ:PL 0/0:13,0:13:33:0,33,450 0/1:10,5:15:99:153,0,281 0/1:7,2:9:18:18,0,228 0/1:5,2:7:54:54,0,154 +chr8 41472375 rs11995712 G A 37.28 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.537;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.6546;MLEAC=3;MLEAF=0.500;MQ=29.65;MQ0=0;MQRankSum=0.406;QD=9.32;ReadPosRankSum=-0.406;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:6:0,6,75 1/1:0,2:2:3:42,3,0 0/1:1,1:2:26:34,0,26 ./. +chr8 41519248 rs516946 T C 909.52 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.523;DB;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=4.4940;MLEAC=5;MLEAF=0.625;MQ=25.50;MQ0=0;MQRankSum=2.083;QD=14.21;ReadPosRankSum=0.798;SB=-2.017e+02 GT:AD:DP:GQ:PL 0/1:10,3:13:67:67,0,145 0/1:5,7:12:3:153,0,3 0/1:10,13:23:15:359,0,15 1/1:2,13:15:7:373,7,0 +chr8 41581912 . G C 64.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.065;DP=16;Dels=0.00;FS=11.139;HaplotypeScore=0.4339;MLEAC=4;MLEAF=0.500;MQ=30.05;MQ0=0;MQRankSum=0.588;QD=5.35;ReadPosRankSum=1.501;SB=-2.279e-01 GT:AD:DP:GQ:PL 0/1:5,1:6:22:22,0,113 0/1:2,2:4:35:46,0,35 0/0:4,0:4:6:0,6,67 1/1:1,1:2:3:39,3,0 +chr8 41790518 . A C 374.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.561;DP=263;Dels=0.05;FS=57.219;HaplotypeScore=26.8328;MLEAC=3;MLEAF=0.375;MQ=31.72;MQ0=0;MQRankSum=-4.636;QD=2.05;ReadPosRankSum=1.233;SB=-9.159e-01 GT:AD:DP:GQ:PL 0/1:45,5:50:68:68,0,536 0/1:54,8:62:99:130,0,854 0/0:73,5:79:4:0,4,1145 0/1:47,11:59:99:218,0,562 +chr8 41805479 . C A 88.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.543;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=2.5850;MLEAC=3;MLEAF=0.375;MQ=34.96;MQ0=0;MQRankSum=-3.569;QD=1.42;ReadPosRankSum=3.458;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,5:29:92:92,0,458 0/1:22,3:26:15:15,0,451 0/0:20,0:20:39:0,39,500 0/1:5,1:6:24:24,0,66 +chr8 42146209 . C G 50.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.908;DP=51;Dels=0.00;FS=32.972;HaplotypeScore=0.4833;MLEAC=3;MLEAF=0.375;MQ=34.93;MQ0=0;MQRankSum=-1.789;QD=1.19;ReadPosRankSum=-0.615;SB=-7.150e-01 GT:AD:DP:GQ:PL 0/1:15,2:17:29:29,0,519 0/1:9,2:11:4:4,0,279 0/1:12,3:15:59:59,0,323 0/0:8,0:8:15:0,15,184 +chr8 42163991 . C A 277.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.140;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5500;MLEAC=4;MLEAF=0.500;MQ=25.51;MQ0=0;MQRankSum=-2.299;QD=4.27;ReadPosRankSum=0.620;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,3:16:59:59,0,252 0/1:7,5:12:66:66,0,105 0/1:16,5:21:99:117,0,174 0/1:10,6:16:78:78,0,158 +chr8 42166548 . G T 33.37 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.646;DP=139;Dels=0.00;FS=4.381;HaplotypeScore=0.9871;MLEAC=1;MLEAF=0.125;MQ=30.77;MQ0=0;MQRankSum=0.129;QD=0.88;ReadPosRankSum=-1.733;SB=-3.517e+00 GT:AD:DP:GQ:PL 0/0:34,2:36:42:0,42,913 0/0:33,2:35:34:0,34,860 0/0:28,2:30:5:0,5,637 0/1:33,5:38:69:69,0,528 +chr8 42174380 rs56230731 G A 168.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.331;DB;DP=76;Dels=0.00;FS=1.723;HaplotypeScore=0.4971;MLEAC=1;MLEAF=0.125;MQ=37.35;MQ0=0;MQRankSum=-2.471;QD=11.27;ReadPosRankSum=1.026;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/0:26,0:26:72:0,72,936 0/1:8,7:15:99:205,0,219 0/0:20,0:20:51:0,51,684 0/0:15,0:15:39:0,39,493 +chr8 42175142 . C A 63.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.701;DP=98;Dels=0.01;FS=7.006;HaplotypeScore=12.3760;MLEAC=2;MLEAF=0.250;MQ=27.10;MQ0=0;MQRankSum=-1.946;QD=1.48;ReadPosRankSum=3.107;SB=0.274 GT:AD:DP:GQ:PL 0/0:25,1:27:28:0,28,459 0/1:24,6:30:49:49,0,409 0/0:26,1:27:25:0,25,546 0/1:9,4:13:56:56,0,106 +chr8 42183358 . A C 99.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.596;DP=27;Dels=0.00;FS=4.260;HaplotypeScore=3.2340;MLEAC=4;MLEAF=0.500;MQ=20.34;MQ0=0;MQRankSum=-1.193;QD=4.33;ReadPosRankSum=2.981;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,8:10:52:63,0,52 1/1:2,3:5:3:25,3,0 0/1:4,4:8:14:55,0,14 0/0:4,0:4:9:0,9,88 +chr8 42188512 . A G 30.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.750;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.9381;MLEAC=2;MLEAF=0.250;MQ=27.67;MQ0=0;MQRankSum=1.598;QD=0.58;ReadPosRankSum=0.989;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:30:0,30,330 0/1:15,1:17:2:2,0,199 0/1:20,1:21:1:1,0,302 0/1:11,3:14:63:63,0,237 +chr8 42234506 . C G 42.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.523;DP=132;Dels=0.00;FS=11.779;HaplotypeScore=7.9720;MLEAC=2;MLEAF=0.250;MQ=31.77;MQ0=0;MQRankSum=-2.533;QD=0.66;ReadPosRankSum=0.395;SB=1.11 GT:AD:DP:GQ:PL 0/0:30,2:32:14:0,14,617 0/1:28,3:32:35:35,0,414 0/1:27,5:33:49:49,0,658 0/0:31,3:35:24:0,24,753 +chr8 42401522 . G T 53.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.411;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=7.4060;MLEAC=2;MLEAF=0.250;MQ=25.54;MQ0=0;MQRankSum=-0.543;QD=1.61;ReadPosRankSum=2.714;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:61:61,0,206 0/0:23,1:24:5:0,5,220 0/0:23,1:25:2:0,2,193 0/1:12,2:14:31:31,0,71 +chr8 42585736 . G C 1140.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.166;DP=90;Dels=0.00;FS=3.537;HaplotypeScore=1.2217;MLEAC=4;MLEAF=0.500;MQ=35.66;MQ0=0;MQRankSum=1.182;QD=12.67;ReadPosRankSum=2.176;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,10:25:99:313,0,127 0/1:19,8:27:99:192,0,375 0/1:14,13:27:99:412,0,109 0/1:3,8:11:40:266,0,40 +chr8 42608199 rs2304297 G C 158.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.079;DB;DP=21;Dels=0.00;FS=2.831;HaplotypeScore=0.2474;MLEAC=3;MLEAF=0.375;MQ=33.38;MQ0=0;MQRankSum=-0.872;QD=7.94;ReadPosRankSum=-0.555;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,5:12:99:143,0,160 0/1:5,1:6:22:22,0,134 0/1:1,1:2:35:35,0,37 0/0:1,0:1:3:0,3,43 +chr8 48196478 rs116868791 A T 57 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.231;DB;DP=5;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=27.28;MQ0=0;MQRankSum=0.358;QD=19.00;ReadPosRankSum=-1.231;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:32,3,0 1/1:0,2:2:6:64,6,0 ./. 0/0:2,0:2:3:0,3,39 +chr8 48353122 . A G 182.14 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.041;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1145;MLEAC=3;MLEAF=0.375;MQ=29.11;MQ0=0;MQRankSum=-2.590;QD=3.14;ReadPosRankSum=-1.551;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:23:23,0,303 0/1:15,8:23:99:154,0,113 0/0:23,1:24:12:0,12,484 0/1:15,3:18:48:48,0,290 +chr8 48511561 . A T 192.78 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.396;DP=102;Dels=0.00;FS=46.392;HaplotypeScore=3.7579;MLEAC=3;MLEAF=0.375;MQ=30.69;MQ0=0;MQRankSum=-1.998;QD=2.57;ReadPosRankSum=2.197;SB=-9.710e-03 GT:AD:DP:GQ:PL 0/1:13,5:19:99:147,0,117 0/1:27,5:32:14:14,0,402 0/0:25,2:27:8:0,8,378 0/1:20,4:24:74:74,0,250 +chr8 48625400 . C G 58.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.547;DP=162;Dels=0.01;FS=32.844;HaplotypeScore=6.9489;MLEAC=2;MLEAF=0.250;MQ=32.79;MQ0=0;MQRankSum=-0.211;QD=0.77;ReadPosRankSum=0.914;SB=1.02 GT:AD:DP:GQ:PL 0/1:34,3:37:22:22,0,656 0/0:33,3:36:31:0,31,842 0/0:47,1:48:97:0,97,1281 0/1:34,5:39:78:78,0,669 +chr8 48774963 . C A 100.70 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.205;DP=178;Dels=0.00;FS=91.665;HaplotypeScore=15.3189;MLEAC=2;MLEAF=0.250;MQ=31.33;MQ0=0;MQRankSum=-0.432;QD=1.36;ReadPosRankSum=-1.450;SB=-5.086e+00 GT:AD:DP:GQ:PL 0/0:49,3:52:7:0,7,1133 0/1:50,8:58:99:133,0,1058 0/0:48,4:52:6:0,6,970 0/1:15,1:16:5:5,0,278 +chr8 48846514 . G A 31.46 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.912;DP=128;Dels=0.00;FS=10.624;HaplotypeScore=17.1092;MLEAC=3;MLEAF=0.375;MQ=27.87;MQ0=0;MQRankSum=-2.069;QD=0.34;ReadPosRankSum=-0.468;SB=-3.251e+00 GT:AD:DP:GQ:PL 0/1:29,3:32:10:10,0,404 0/1:34,4:39:21:21,0,531 0/0:35,0:35:60:0,60,643 0/1:20,2:22:43:43,0,85 +chr8 48852328 rs8178016 C T 484.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.185;DB;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.4982;MLEAC=3;MLEAF=0.375;MQ=36.92;MQ0=0;MQRankSum=-2.222;QD=12.76;ReadPosRankSum=1.696;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,7:16:99:214,0,270 0/0:25,0:25:72:0,72,900 0/1:10,8:18:99:257,0,348 0/1:2,2:4:57:57,0,66 +chr8 48882685 . A G 37.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.275;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.8364;MLEAC=3;MLEAF=0.375;MQ=29.46;MQ0=0;MQRankSum=-1.753;QD=1.05;ReadPosRankSum=2.333;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:20:20,0,301 0/0:16,2:18:8:0,8,264 0/1:12,2:14:16:16,0,211 0/1:4,2:6:44:44,0,51 +chr8 49985475 . G T 56.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.913;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.7641;MLEAC=3;MLEAF=0.375;MQ=34.31;MQ0=0;MQRankSum=-2.203;QD=0.45;ReadPosRankSum=-1.132;SB=-1.695e+00 GT:AD:DP:GQ:PL 0/1:41,4:45:10:10,0,969 0/0:37,1:39:56:0,56,1022 0/1:41,4:45:5:5,0,1093 0/1:30,4:35:82:82,0,466 +chr8 50265283 rs1519824 G A 196.85 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.532;DB;DP=17;Dels=0.00;FS=6.368;HaplotypeScore=0.4434;MLEAC=6;MLEAF=1.00;MQ=22.46;MQ0=0;MQRankSum=2.637;QD=14.06;ReadPosRankSum=1.749;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,2:6:6:77,6,0 1/1:3,3:6:9:113,9,0 1/1:1,1:2:3:43,3,0 ./. +chr8 51449360 . T G 38.20 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.052;DP=191;Dels=0.01;FS=14.695;HaplotypeScore=8.3312;MLEAC=2;MLEAF=0.250;MQ=34.68;MQ0=0;MQRankSum=-2.721;QD=0.45;ReadPosRankSum=0.919;SB=-2.172e+00 GT:AD:DP:GQ:PL 0/1:42,6:48:65:65,0,808 0/0:50,1:51:58:0,58,1029 0/0:53,2:55:15:0,15,903 0/1:34,2:36:14:14,0,385 +chr8 51617003 rs1567311 G T 222.40 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.747;DB;DP=11;Dels=0.00;FS=6.532;HaplotypeScore=0.4434;MLEAC=6;MLEAF=1.00;MQ=29.26;MQ0=0;MQRankSum=0.747;QD=24.71;ReadPosRankSum=-0.747;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:9:126,9,0 ./. 1/1:0,2:2:6:69,6,0 1/1:0,2:3:6:64,6,0 +chr8 52370326 rs28719126 T C 72.14 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.751;DB;DP=72;Dels=0.04;FS=0.000;HaplotypeScore=2.6626;MLEAC=1;MLEAF=0.125;MQ=31.38;MQ0=0;MQRankSum=-1.711;QD=4.24;ReadPosRankSum=0.628;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,5:15:99:108,0,290 0/0:27,0:27:63:0,63,722 0/0:21,0:21:54:0,54,644 0/0:6,0:6:9:0,9,112 +chr8 52634348 rs4873201 G A 535.73 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.450;DB;DP=42;Dels=0.00;FS=8.439;HaplotypeScore=4.0433;MLEAC=7;MLEAF=0.875;MQ=22.18;MQ0=0;MQRankSum=0.668;QD=12.76;ReadPosRankSum=0.056;SB=-1.442e+02 GT:AD:DP:GQ:PL 1/1:4,7:11:18:195,18,0 1/1:4,7:11:18:160,18,0 1/1:2,6:8:15:162,15,0 0/1:6,5:12:33:63,0,33 +chr8 53028828 . A C 42.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.293;DP=195;Dels=0.01;FS=25.713;HaplotypeScore=14.0831;MLEAC=1;MLEAF=0.125;MQ=36.60;MQ0=0;MQRankSum=-4.106;QD=1.13;ReadPosRankSum=0.425;SB=0.082 GT:AD:DP:GQ:PL 0/0:45,2:47:67:0,67,1375 0/0:44,2:46:73:0,73,1462 0/0:62,1:63:99:0,133,1946 0/1:31,6:38:79:79,0,691 +chr8 53077872 . A C 111.99 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.422;DP=54;Dels=0.04;FS=0.000;HaplotypeScore=10.3193;MLEAC=4;MLEAF=0.500;MQ=25.54;MQ0=0;MQRankSum=-2.084;QD=2.07;ReadPosRankSum=2.857;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,6:18:78:78,0,164 0/1:10,5:16:48:48,0,146 0/1:7,4:11:10:10,0,77 0/1:6,1:7:18:18,0,101 +chr8 53574201 rs111788773 T G 1915.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.278;DB;DP=163;Dels=0.01;FS=69.083;HaplotypeScore=18.6238;MLEAC=4;MLEAF=0.500;MQ=33.00;MQ0=0;MQRankSum=-2.311;QD=11.75;ReadPosRankSum=4.499;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/1:27,20:47:99:585,0,534 0/1:28,20:49:99:577,0,349 0/1:29,20:52:99:632,0,344 0/1:6,6:13:74:164,0,74 +chr8 53888488 . A G 103.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.314;DP=57;Dels=0.00;FS=41.547;HaplotypeScore=2.1314;MLEAC=3;MLEAF=0.375;MQ=32.98;MQ0=0;MQRankSum=-1.547;QD=1.89;ReadPosRankSum=1.183;SB=-2.020e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:26:26,0,355 0/1:17,4:21:64:64,0,468 0/1:14,3:18:55:55,0,294 0/0:1,1:2:3:0,3,23 +chr8 54142426 . T G 37.74 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.466;DP=80;Dels=0.01;FS=4.430;HaplotypeScore=5.1465;MLEAC=3;MLEAF=0.375;MQ=29.77;MQ0=0;MQRankSum=-1.065;QD=0.64;ReadPosRankSum=-1.925;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,1:21:29:0,29,506 0/1:24,3:27:53:53,0,355 0/1:13,1:14:2:2,0,243 0/1:13,4:17:23:23,0,247 +chr8 55049777 . G A 58.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.512;DP=90;Dels=0.03;FS=0.000;HaplotypeScore=1.5963;MLEAC=3;MLEAF=0.375;MQ=28.52;MQ0=0;MQRankSum=0.315;QD=0.90;ReadPosRankSum=-1.633;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,1:18:4:4,0,256 0/1:28,4:33:72:72,0,450 0/0:23,2:25:11:0,11,538 0/1:9,2:11:23:23,0,302 +chr8 55501638 rs10091604 G C 43.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.380;DB;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=14.56;MQ0=0;MQRankSum=1.380;QD=6.14;ReadPosRankSum=-1.380;SB=-3.300e+01 GT:AD:DP:GQ:PL 1/1:3,1:4:3:36,3,0 ./. 1/1:2,1:3:3:40,3,0 ./. +chr8 56362450 . G C 61.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.010;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1729;MLEAC=3;MLEAF=0.375;MQ=30.75;MQ0=0;MQRankSum=-0.664;QD=2.38;ReadPosRankSum=-1.357;SB=0.028 GT:AD:DP:GQ:PL 0/1:7,2:9:39:39,0,117 0/1:9,1:10:17:17,0,112 0/0:10,0:10:21:0,21,201 0/1:5,2:7:49:49,0,65 +chr8 56364813 . T A 46.48 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.102;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=19.2163;MLEAC=3;MLEAF=0.375;MQ=21.30;MQ0=0;MQRankSum=0.577;QD=1.11;ReadPosRankSum=-2.412;SB=23.12 GT:AD:DP:GQ:PL 1/1:11,1:14:3:24,3,0 0/0:14,0:14:12:0,12,130 0/1:11,2:13:38:38,0,73 0/1:11,2:13:28:28,0,116 +chr8 56755188 rs74654217 A G 389.51 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.504;DB;DP=16;Dels=0.00;FS=11.761;HaplotypeScore=0.4833;MLEAC=8;MLEAF=1.00;MQ=25.31;MQ0=0;MQRankSum=1.504;QD=24.34;ReadPosRankSum=-0.810;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:9:97,9,0 1/1:0,3:3:9:95,9,0 1/1:0,5:5:15:146,15,0 1/1:1,3:4:9:90,9,0 +chr8 57354445 . T G 90.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.129;DP=119;Dels=0.03;FS=9.690;HaplotypeScore=13.1240;MLEAC=3;MLEAF=0.375;MQ=21.42;MQ0=0;MQRankSum=1.034;QD=1.06;ReadPosRankSum=-2.469;SB=2.12 GT:AD:DP:GQ:PL 0/1:32,3:35:39:39,0,198 0/1:20,3:23:31:31,0,124 0/0:33,1:34:10:0,10,320 0/1:19,4:23:63:63,0,83 +chr8 57501364 . T G 125.54 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.964;DP=38;Dels=0.00;FS=3.056;HaplotypeScore=1.4791;MLEAC=5;MLEAF=0.625;MQ=22.21;MQ0=0;MQRankSum=1.813;QD=3.30;ReadPosRankSum=1.890;SB=-1.373e-02 GT:AD:DP:GQ:PL 1/1:4,1:5:3:34,3,0 0/1:14,1:15:6:6,0,106 0/1:7,4:12:11:79,0,11 0/1:4,2:6:16:48,0,16 +chr8 61765419 rs6999971 G A 1076.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.088;DB;DP=385;Dels=0.00;FS=37.147;HaplotypeScore=2.2863;MLEAC=1;MLEAF=0.125;MQ=38.88;MQ0=0;MQRankSum=-4.319;QD=12.82;ReadPosRankSum=1.044;SB=-3.320e+02 GT:AD:DP:GQ:PL 0/1:48,36:84:99:1113,0,1502 0/0:101,0:101:99:0,292,3865 0/0:114,0:114:99:0,343,4635 0/0:85,1:86:99:0,200,3059 +chr8 61768477 . TAG T 331.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.323;DP=76;FS=0.000;HaplotypeScore=43.6386;MLEAC=4;MLEAF=0.500;MQ=23.72;MQ0=0;MQRankSum=2.185;QD=4.36;ReadPosRankSum=-2.862;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:14,2:15:98:98,0,272 0/1:19,2:11:67:67,0,230 0/1:18,1:15:22:22,0,152 0/1:8,4:8:99:196,0,127 +chr8 62212776 . G T 59.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.864;DP=130;Dels=0.00;FS=73.595;HaplotypeScore=8.0634;MLEAC=3;MLEAF=0.375;MQ=33.67;MQ0=0;MQRankSum=-2.931;QD=0.61;ReadPosRankSum=1.002;SB=1.11 GT:AD:DP:GQ:PL 0/1:34,4:38:34:34,0,831 0/0:32,1:33:45:0,45,791 0/1:32,4:36:11:11,0,878 0/1:18,5:23:57:57,0,476 +chr8 63057246 rs4383956 A G 62.85 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.380;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.9105;MLEAC=5;MLEAF=0.833;MQ=19.60;MQ0=0;MQRankSum=0.000;QD=8.98;ReadPosRankSum=1.380;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:48,6,0 1/1:2,2:4:6:55,6,0 0/0:1,0:1:3:0,3,34 ./. +chr8 63951237 rs11545077 C T 56.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.358;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=21.26;MQ0=0;MQRankSum=1.231;QD=9.37;ReadPosRankSum=1.231;SB=-2.521e+01 GT:AD:DP:GQ:PL 1/1:1,1:2:3:39,3,0 ./. 1/1:2,2:4:6:51,6,0 ./. +chr8 67369184 rs2303519 C T 1045.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.481;DB;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=1.4161;MLEAC=3;MLEAF=0.375;MQ=33.63;MQ0=0;MQRankSum=-2.039;QD=8.17;ReadPosRankSum=0.137;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:37,14:51:99:300,0,1076 0/0:62,0:62:99:0,168,2092 0/1:23,20:43:99:555,0,604 0/1:24,10:34:99:234,0,551 +chr8 67369352 . C A 37.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.141;DP=495;Dels=0.00;FS=28.234;HaplotypeScore=10.3915;MLEAC=1;MLEAF=0.125;MQ=35.53;MQ0=0;MQRankSum=-2.107;QD=0.36;ReadPosRankSum=-0.193;SB=0.292 GT:AD:DP:GQ:PL 0/0:115,8:123:57:0,57,3061 0/0:113,4:117:99:0,138,3064 0/0:141,8:150:87:0,87,3592 0/1:96,9:105:74:74,0,2306 +chr8 67771809 . T G 41.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.266;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=7.9489;MLEAC=2;MLEAF=0.250;MQ=34.91;MQ0=0;MQRankSum=-2.853;QD=0.87;ReadPosRankSum=-0.795;SB=0.015 GT:AD:DP:GQ:PL 0/0:40,2:42:26:0,26,1052 0/0:37,1:38:74:0,74,1204 0/1:32,3:36:36:36,0,536 0/1:9,2:11:47:47,0,140 +chr8 67958022 . A C 30.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.975;DP=105;Dels=0.00;FS=2.321;HaplotypeScore=1.6361;MLEAC=2;MLEAF=0.250;MQ=33.69;MQ0=0;MQRankSum=-1.844;QD=0.62;ReadPosRankSum=-0.942;SB=0.065 GT:AD:DP:GQ:PL 0/1:24,3:27:38:38,0,556 0/0:28,1:29:24:0,24,611 0/0:27,0:27:54:0,54,698 0/1:19,3:22:34:34,0,245 +chr8 68112596 . G A 200.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.867;DP=55;Dels=0.00;FS=20.273;HaplotypeScore=5.2306;MLEAC=4;MLEAF=0.500;MQ=33.56;MQ0=0;MQRankSum=-2.295;QD=3.65;ReadPosRankSum=1.225;SB=-1.191e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:85:85,0,371 0/1:12,4:16:63:63,0,217 0/1:13,2:16:45:45,0,244 0/1:3,3:6:25:50,0,25 +chr8 68163741 . T A 74.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.563;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4571;MLEAC=2;MLEAF=0.250;MQ=32.19;MQ0=0;MQRankSum=-1.916;QD=2.19;ReadPosRankSum=-1.139;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,5:27:88:88,0,471 0/0:26,0:26:57:0,57,657 0/0:24,1:25:29:0,29,625 0/1:5,2:7:28:28,0,114 +chr8 68989661 . G T 170.11 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.542;DP=172;Dels=0.01;FS=35.326;HaplotypeScore=4.7612;MLEAC=1;MLEAF=0.125;MQ=38.88;MQ0=0;MQRankSum=-2.316;QD=5.67;ReadPosRankSum=-1.428;SB=-5.561e+00 GT:AD:DP:GQ:PL 0/0:40,3:43:10:0,10,1247 0/0:43,1:44:85:0,85,1388 0/0:53,1:54:99:0,108,1631 0/1:21,9:30:99:206,0,630 +chr8 68989780 . C G 80.76 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.944;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.0780;MLEAC=2;MLEAF=0.250;MQ=31.92;MQ0=0;MQRankSum=-0.438;QD=1.92;ReadPosRankSum=-0.737;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,1:18:12:0,12,390 0/0:19,0:19:36:0,36,387 0/1:21,2:23:27:27,0,337 0/1:14,4:19:95:95,0,359 +chr8 68999938 rs4382459 C T 1091.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.260;DB;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=0.2487;MLEAC=3;MLEAF=0.375;MQ=39.20;MQ0=0;MQRankSum=-5.815;QD=8.33;ReadPosRankSum=1.139;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,162,2201 0/1:31,17:48:99:519,0,1134 0/1:33,9:42:99:208,0,1180 0/1:27,14:41:99:408,0,923 +chr8 70476419 . G C 147.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.198;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.2443;MLEAC=3;MLEAF=0.375;MQ=37.39;MQ0=0;MQRankSum=-3.385;QD=1.26;ReadPosRankSum=1.197;SB=-1.190e-02 GT:AD:DP:GQ:PL 0/1:30,3:33:47:47,0,628 0/1:32,7:39:99:136,0,694 0/0:45,2:47:54:0,54,1329 0/1:42,3:45:7:7,0,932 +chr8 72111641 . G T 45.11 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.242;DP=44;Dels=0.00;FS=5.433;HaplotypeScore=4.5996;MLEAC=3;MLEAF=0.375;MQ=31.24;MQ0=0;MQRankSum=-0.403;QD=2.26;ReadPosRankSum=-0.671;SB=-2.927e+00 GT:AD:DP:GQ:PL 0/0:9,0:10:15:0,15,139 0/1:8,3:11:67:67,0,162 0/1:8,1:9:17:17,0,53 0/0:13,1:14:0:0,0,221 +chr8 72184167 . T A 93.24 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.366;DP=189;Dels=0.01;FS=0.000;HaplotypeScore=8.0515;MLEAC=4;MLEAF=0.500;MQ=37.77;MQ0=0;MQRankSum=-3.145;QD=0.49;ReadPosRankSum=3.012;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:43,5:48:66:66,0,952 0/1:49,5:54:46:46,0,1110 0/1:49,5:54:15:15,0,1003 0/1:29,3:32:8:8,0,583 +chr8 73149156 rs11416470 C CT 382.19 . AC=6;AF=1.00;AN=6;BaseQRankSum=-1.738;DB;DP=28;FS=0.000;HaplotypeScore=4.2824;MLEAC=6;MLEAF=1.00;MQ=26.27;MQ0=0;MQRankSum=1.448;QD=15.29;RPA=2,3;RU=T;ReadPosRankSum=1.159;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:3,1:2:3:41,3,0 1/1:5,4:4:12:163,12,0 1/1:7,5:9:15:224,15,0 ./. +chr8 73921090 . T C 38.75 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.685;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=1.9249;MLEAC=1;MLEAF=0.125;MQ=35.39;MQ0=0;MQRankSum=-1.846;QD=3.23;ReadPosRankSum=0.883;SB=-1.034e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,36 0/1:9,3:12:74:74,0,169 0/0:17,0:17:30:0,30,393 0/0:6,0:6:9:0,9,127 +chr8 73993478 . T G 90.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.841;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.2306;MLEAC=4;MLEAF=0.500;MQ=41.20;MQ0=0;MQRankSum=-4.535;QD=1.18;ReadPosRankSum=-2.598;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:24:24,0,303 0/1:21,3:24:19:19,0,779 0/1:17,2:19:24:24,0,484 0/1:16,4:20:66:66,0,464 +chr8 74205710 rs140937357 GT G 436.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.293;DB;DP=46;FS=0.000;HaplotypeScore=5.2832;MLEAC=3;MLEAF=0.375;MQ=27.55;MQ0=0;MQRankSum=0.460;QD=13.65;RPA=2,1;RU=T;ReadPosRankSum=0.293;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:4,7:9:58:270,0,58 0/0:14,0:9:27:0,27,382 0/1:10,4:7:99:149,0,106 0/1:3,2:6:70:70,0,96 +chr8 74502909 rs716009 T C 234.89 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.166;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=31.76;MQ0=0;MQRankSum=2.166;QD=23.49;ReadPosRankSum=1.818;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:87,6,0 1/1:1,1:2:3:29,3,0 1/1:0,1:1:3:43,3,0 1/1:1,3:4:9:113,9,0 +chr8 74527996 rs949493 C T 608.45 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.307;DB;DP=61;Dels=0.00;FS=33.577;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=17.97;MQ0=0;MQRankSum=0.539;QD=9.97;ReadPosRankSum=2.724;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,13:14:18:89,0,18 1/1:1,21:22:24:238,24,0 1/1:1,19:20:24:262,24,0 1/1:1,4:5:6:63,6,0 +chr8 75157061 . G A 76.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.899;DP=139;Dels=0.01;FS=29.923;HaplotypeScore=10.3203;MLEAC=2;MLEAF=0.250;MQ=33.46;MQ0=0;MQRankSum=-3.287;QD=1.06;ReadPosRankSum=1.583;SB=-2.060e+00 GT:AD:DP:GQ:PL 0/1:32,3:35:28:28,0,664 0/0:30,2:32:8:0,8,749 0/1:31,6:37:89:89,0,663 0/0:33,1:34:63:0,63,848 +chr8 75171728 . C T 56.63 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.983;DP=33;Dels=0.00;FS=2.679;HaplotypeScore=5.7588;MLEAC=3;MLEAF=0.375;MQ=22.93;MQ0=0;MQRankSum=0.462;QD=2.10;ReadPosRankSum=1.214;SB=0.426 GT:AD:DP:GQ:PL 0/1:8,2:10:16:55,0,16 0/0:5,1:6:9:0,9,92 0/1:5,1:6:15:15,0,72 0/1:8,3:11:29:29,0,142 +chr8 75518147 . C T 64.34 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.825;DP=24;Dels=0.00;FS=2.808;HaplotypeScore=1.5039;MLEAC=3;MLEAF=0.500;MQ=20.37;MQ0=0;MQRankSum=2.180;QD=6.43;ReadPosRankSum=0.600;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,1:5:3:28,3,0 ./. 0/0:7,0:7:3:0,3,38 0/1:2,3:5:14:74,0,14 +chr8 75898315 rs141929155 A C 227.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.117;DB;DP=162;Dels=0.01;FS=84.439;HaplotypeScore=6.7034;MLEAC=4;MLEAF=0.500;MQ=29.90;MQ0=0;MQRankSum=-3.745;QD=1.41;ReadPosRankSum=1.627;SB=-5.373e-02 GT:AD:DP:GQ:PL 0/1:36,7:44:51:51,0,619 0/1:32,9:43:99:127,0,666 0/1:36,5:41:19:19,0,802 0/1:25,6:32:73:73,0,261 +chr8 75898571 rs144069052 T C 631.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=5.665;DB;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8114;MLEAC=3;MLEAF=0.375;MQ=32.19;MQ0=0;MQRankSum=2.473;QD=12.64;ReadPosRankSum=-0.295;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,6:17:99:173,0,192 0/0:32,0:32:81:0,81,850 0/1:13,14:27:99:475,0,183 0/1:4,1:6:27:27,0,63 +chr8 75925293 . A G 378.56 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.266;DP=41;Dels=0.05;FS=0.000;HaplotypeScore=8.6773;MLEAC=6;MLEAF=0.750;MQ=23.63;MQ0=0;MQRankSum=1.826;QD=9.23;ReadPosRankSum=0.550;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,5:10:12:108,12,0 0/1:7,9:16:41:214,0,41 0/1:3,4:7:13:43,0,13 1/1:4,2:6:6:58,6,0 +chr8 77776318 . C T 39.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-7.187;DP=317;Dels=0.01;FS=72.117;HaplotypeScore=19.8196;MLEAC=2;MLEAF=0.250;MQ=31.85;MQ0=0;MQRankSum=-5.711;QD=0.28;ReadPosRankSum=2.738;SB=-1.250e+00 GT:AD:DP:GQ:PL 0/1:81,10:92:49:49,0,2078 0/0:71,7:78:11:0,11,1939 0/0:88,6:94:99:0,101,2433 0/1:45,5:50:32:32,0,1054 +chr8 80065153 . A G 50.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DP=5;Dels=0.00;FS=4.771;HaplotypeScore=0.6651;MLEAC=4;MLEAF=1.00;MQ=26.64;MQ0=0;MQRankSum=0.736;QD=10.00;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:2:3:44,3,0 1/1:2,1:3:3:39,3,0 +chr8 82513093 rs10088015 T C 62.65 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.796;DB;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.3319;MLEAC=3;MLEAF=0.500;MQ=17.00;MQ0=0;MQRankSum=1.041;QD=4.82;ReadPosRankSum=1.776;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,54 1/1:3,3:6:6:57,6,0 0/1:5,2:7:41:46,0,41 ./. +chr8 82530330 . T C 79.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.832;DP=49;Dels=0.04;FS=19.632;HaplotypeScore=1.9168;MLEAC=4;MLEAF=0.500;MQ=28.91;MQ0=0;MQRankSum=-1.807;QD=1.61;ReadPosRankSum=1.116;SB=-3.272e+00 GT:AD:DP:GQ:PL 0/1:15,1:16:4:4,0,259 0/1:6,3:9:24:70,0,24 0/1:11,2:13:32:32,0,213 0/1:7,2:9:14:14,0,80 +chr8 82720107 rs2600601 T C 144.46 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.184;DB;DP=163;Dels=0.00;FS=0.626;HaplotypeScore=1.6164;MLEAC=2;MLEAF=0.250;MQ=10.89;MQ0=0;MQRankSum=1.716;QD=1.85;ReadPosRankSum=0.382;SB=-4.622e+01 GT:AD:DP:GQ:PL 1/1:7,34:42:6:67,6,0 0/0:40,1:42:3:0,3,30 0/0:25,18:43:6:0,6,78 0/1:25,10:36:26:120,0,26 +chr8 86041478 . A C 112.60 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.240;DP=280;Dels=0.00;FS=34.502;HaplotypeScore=4.8864;MLEAC=3;MLEAF=0.375;MQ=30.76;MQ0=0;MQRankSum=-0.974;QD=0.57;ReadPosRankSum=0.586;SB=-1.741e+00 GT:AD:DP:GQ:PL 0/1:77,5:82:13:13,0,1493 0/1:74,9:83:99:135,0,1462 0/0:81,2:83:99:0,99,1657 0/1:30,2:32:6:6,0,570 +chr8 87060894 . A T 147.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.384;DP=125;Dels=0.02;FS=31.802;HaplotypeScore=18.1768;MLEAC=2;MLEAF=0.250;MQ=28.29;MQ0=0;MQRankSum=-2.134;QD=2.20;ReadPosRankSum=-1.038;SB=0.980 GT:AD:DP:GQ:PL 0/1:25,5:30:99:111,0,337 0/0:27,1:28:18:0,18,191 0/1:31,5:37:78:78,0,363 0/0:26,1:28:21:0,21,238 +chr8 87570436 . T C 66.24 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.393;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7261;MLEAC=2;MLEAF=0.250;MQ=34.02;MQ0=0;MQRankSum=-2.343;QD=1.58;ReadPosRankSum=1.727;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,2:20:33:33,0,262 0/1:18,4:22:74:74,0,265 0/0:20,0:20:24:0,24,278 0/0:5,0:5:6:0,6,61 +chr8 87638233 . A G 61.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.240;DP=72;Dels=0.01;FS=4.920;HaplotypeScore=10.4519;MLEAC=2;MLEAF=0.250;MQ=28.19;MQ0=0;MQRankSum=-2.577;QD=1.54;ReadPosRankSum=-0.065;SB=0.492 GT:AD:DP:GQ:PL 0/0:23,1:24:21:0,21,565 0/1:18,3:21:29:29,0,258 0/1:15,4:19:74:74,0,244 0/0:7,0:7:12:0,12,148 +chr8 87670824 . A T 34.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.416;DP=37;Dels=0.00;FS=2.026;HaplotypeScore=1.5298;MLEAC=2;MLEAF=0.250;MQ=17.01;MQ0=0;MQRankSum=1.951;QD=1.66;ReadPosRankSum=-0.508;SB=-6.466e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:35:56,0,35 0/1:12,1:13:18:18,0,89 0/0:5,1:6:3:0,3,30 0/0:10,0:10:6:0,6,43 +chr8 88801924 . T A 154.68 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.684;DP=41;Dels=0.02;FS=6.864;HaplotypeScore=9.1757;MLEAC=5;MLEAF=0.625;MQ=26.89;MQ0=0;MQRankSum=1.107;QD=4.99;ReadPosRankSum=1.299;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:6:0,6,48 0/1:8,3:11:24:51,0,24 1/1:7,2:9:6:45,6,0 1/1:7,3:10:9:105,9,0 +chr8 91029628 . G A 59.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.689;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1467;MLEAC=2;MLEAF=0.250;MQ=35.64;MQ0=0;MQRankSum=-2.624;QD=1.27;ReadPosRankSum=0.468;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,2:24:25:25,0,356 0/0:26,1:27:22:0,22,578 0/0:38,2:40:21:0,21,769 0/1:19,4:23:76:76,0,191 +chr8 91657421 . A G 284.40 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.977;DP=114;Dels=0.00;FS=9.323;HaplotypeScore=3.5166;MLEAC=4;MLEAF=0.500;MQ=30.59;MQ0=0;MQRankSum=-0.423;QD=3.43;ReadPosRankSum=1.496;SB=0.193 GT:AD:DP:GQ:PL 0/1:21,2:24:11:11,0,526 0/0:28,3:31:12:0,12,399 0/1:38,5:43:55:55,0,835 1/1:8,8:16:24:266,24,0 +chr8 92083424 rs11557571 A G 4014.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=5.765;DB;DP=271;Dels=0.00;FS=35.461;HaplotypeScore=4.7679;MLEAC=5;MLEAF=0.625;MQ=30.26;MQ0=0;MQRankSum=-1.751;QD=14.81;ReadPosRankSum=1.780;SB=-1.037e+03 GT:AD:DP:GQ:PL 0/1:40,37:78:99:975,0,1051 1/1:15,61:76:99:1964,156,0 0/1:50,28:78:99:733,0,1192 0/1:24,14:38:99:342,0,484 +chr8 92374534 . G T 30.51 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.977;DP=93;Dels=0.03;FS=0.000;HaplotypeScore=16.8628;MLEAC=3;MLEAF=0.375;MQ=23.59;MQ0=0;MQRankSum=-0.958;QD=0.36;ReadPosRankSum=-0.303;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,3:23:38:38,0,125 0/1:27,5:32:10:10,0,324 0/1:24,2:27:24:24,0,84 0/0:8,0:8:6:0,6,49 +chr8 94784856 . C T 57.03 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.970;DP=103;Dels=0.01;FS=3.727;HaplotypeScore=12.2480;MLEAC=2;MLEAF=0.250;MQ=27.71;MQ0=0;MQRankSum=-0.184;QD=1.43;ReadPosRankSum=-0.313;SB=-1.953e+01 GT:AD:DP:GQ:PL 0/0:31,0:31:63:0,63,654 0/0:29,2:32:9:0,9,445 0/1:21,5:26:90:90,0,390 0/1:12,1:13:5:5,0,159 +chr8 94793938 . T A 85.30 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.246;DP=76;Dels=0.00;FS=7.409;HaplotypeScore=0.7433;MLEAC=2;MLEAF=0.250;MQ=36.24;MQ0=0;MQRankSum=1.058;QD=1.81;ReadPosRankSum=0.417;SB=0.166 GT:AD:DP:GQ:PL 0/0:24,1:25:17:0,17,431 0/1:20,2:22:32:32,0,318 0/1:20,5:25:94:94,0,517 0/0:4,0:4:6:0,6,67 +chr8 95531100 . T C 116.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.372;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.1634;MLEAC=2;MLEAF=0.250;MQ=26.99;MQ0=0;MQRankSum=-0.701;QD=2.43;ReadPosRankSum=1.844;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,1:27:19:0,19,418 0/1:21,6:27:99:108,0,383 0/1:18,3:21:50:50,0,336 0/0:11,0:11:18:0,18,166 +chr8 95700594 . T C 31.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.294;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7352;MLEAC=3;MLEAF=0.375;MQ=29.13;MQ0=0;MQRankSum=-0.535;QD=0.89;ReadPosRankSum=0.293;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:43:43,0,134 0/0:17,0:17:33:0,33,366 0/1:16,2:18:17:17,0,356 0/1:6,1:7:14:14,0,165 +chr8 95861724 . C G 296.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.887;DP=109;Dels=0.00;FS=32.535;HaplotypeScore=2.0467;MLEAC=4;MLEAF=0.500;MQ=32.90;MQ0=0;MQRankSum=-3.283;QD=2.72;ReadPosRankSum=-2.784;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:29,5:35:52:52,0,614 0/1:27,5:32:97:97,0,445 0/1:26,6:32:99:121,0,533 0/1:6,4:10:69:69,0,201 +chr8 95886864 . T A 103.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.459;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7384;MLEAC=3;MLEAF=0.375;MQ=27.90;MQ0=0;MQRankSum=-1.850;QD=2.34;ReadPosRankSum=1.429;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,4:21:94:94,0,130 0/0:24,2:26:15:0,15,387 0/1:14,4:18:32:32,0,185 0/1:4,1:5:20:20,0,57 +chr8 95906554 rs2466431 C G 1982.41 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.625;DB;DP=62;Dels=0.00;FS=22.030;HaplotypeScore=1.2237;MLEAC=7;MLEAF=0.875;MQ=34.71;MQ0=0;MQRankSum=3.512;QD=31.97;ReadPosRankSum=1.086;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,16:19:48:636,48,0 1/1:1,17:18:51:668,51,0 1/1:4,14:18:42:554,42,0 0/1:2,5:7:12:168,0,12 +chr8 95951908 . GAGAC G 573.18 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.286;DP=72;FS=0.000;HaplotypeScore=9.9511;MLEAC=6;MLEAF=0.750;MQ=17.78;MQ0=0;MQRankSum=-0.495;QD=7.96;ReadPosRankSum=-3.000;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:18,1:10:42:42,0,621 1/1:18,4:4:12:287,12,0 0/1:18,5:7:99:225,0,194 1/1:7,1:1:3:72,3,0 +chr8 96047725 . T C 144.75 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.801;DP=123;Dels=0.02;FS=114.413;HaplotypeScore=12.7428;MLEAC=2;MLEAF=0.250;MQ=34.59;MQ0=0;MQRankSum=-5.553;QD=1.83;ReadPosRankSum=3.941;SB=-8.258e-01 GT:AD:DP:GQ:PL 0/1:39,11:50:99:166,0,1165 0/1:23,5:28:20:20,0,621 0/0:30,4:34:18:0,18,870 0/0:9,0:9:27:0,27,297 +chr8 96070181 rs2678832 T C 1952.14 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.866;DB;DP=61;Dels=0.03;FS=0.000;HaplotypeScore=0.9901;MLEAC=8;MLEAF=1.00;MQ=34.18;MQ0=0;MQRankSum=2.360;QD=32.00;ReadPosRankSum=-1.731;SB=-4.001e+01 GT:AD:DP:GQ:PL 1/1:2,15:17:45:585,45,0 1/1:1,24:25:69:873,69,0 1/1:3,11:14:33:431,33,0 1/1:0,3:3:9:102,9,0 +chr8 97157113 . T A 139.05 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.131;DP=40;Dels=0.05;FS=5.436;HaplotypeScore=6.9421;MLEAC=4;MLEAF=0.500;MQ=25.86;MQ0=0;MQRankSum=0.362;QD=3.48;ReadPosRankSum=0.498;SB=-1.850e-01 GT:AD:DP:GQ:PL 0/1:3,4:7:27:86,0,27 0/1:13,1:14:10:10,0,145 0/1:7,3:10:70:70,0,81 0/1:6,1:7:15:15,0,116 +chr8 98718878 . A T 183.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.498;DP=265;Dels=0.00;FS=30.582;HaplotypeScore=7.1753;MLEAC=2;MLEAF=0.250;MQ=32.80;MQ0=0;MQRankSum=-1.426;QD=1.64;ReadPosRankSum=4.060;SB=0.737 GT:AD:DP:GQ:PL 0/1:54,6:60:42:42,0,1071 0/0:72,5:77:36:0,36,1650 0/0:70,5:76:23:0,23,1595 0/1:42,10:52:99:183,0,831 +chr8 99019930 rs11775531 G A 421.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.454;DB;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.6758;MLEAC=1;MLEAF=0.125;MQ=34.50;MQ0=0;MQRankSum=-1.533;QD=11.11;ReadPosRankSum=0.632;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:22,16:38:99:458,0,703 0/0:33,0:33:81:0,81,1017 0/0:34,1:35:76:0,76,1175 0/0:31,0:31:87:0,87,1047 +chr8 99118622 rs2242197 A C 1363.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.125;DB;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.4789;MLEAC=4;MLEAF=0.500;MQ=30.48;MQ0=0;MQRankSum=-0.469;QD=9.40;ReadPosRankSum=2.448;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,19:43:99:498,0,601 0/1:29,15:44:99:384,0,764 0/1:28,16:44:99:444,0,742 0/1:10,4:14:80:80,0,233 +chr8 99121037 rs79587389 T G 128.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.182;DB;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=20.4704;MLEAC=4;MLEAF=0.500;MQ=30.25;MQ0=0;MQRankSum=-1.182;QD=1.23;ReadPosRankSum=4.498;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,3:29:21:21,0,735 0/1:26,6:32:99:113,0,751 0/1:26,3:30:17:17,0,741 0/1:12,2:14:20:20,0,297 +chr8 99961544 . G C 47.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.958;DP=192;Dels=0.00;FS=63.286;HaplotypeScore=9.8414;MLEAC=1;MLEAF=0.125;MQ=28.61;MQ0=0;MQRankSum=-1.939;QD=1.04;ReadPosRankSum=-0.789;SB=-5.973e+00 GT:AD:DP:GQ:PL 0/0:43,1:44:60:0,60,933 0/0:44,2:46:36:0,36,944 0/0:53,3:56:66:0,66,1234 0/1:39,7:46:84:84,0,483 +chr8 100050688 . T G 115.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.480;DP=66;Dels=0.02;FS=36.222;HaplotypeScore=2.6513;MLEAC=3;MLEAF=0.375;MQ=29.10;MQ0=0;MQRankSum=-2.887;QD=1.93;ReadPosRankSum=1.761;SB=3.32 GT:AD:DP:GQ:PL 0/1:14,3:18:46:46,0,285 0/1:16,4:20:49:49,0,385 0/1:17,4:21:63:63,0,312 0/0:6,0:6:6:0,6,70 +chr8 100990337 . T A 30.13 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.810;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=13.0705;MLEAC=2;MLEAF=0.250;MQ=24.65;MQ0=0;MQRankSum=1.659;QD=0.91;ReadPosRankSum=-0.347;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,2:20:59:59,0,129 0/0:11,0:11:12:0,12,110 0/1:11,1:12:10:10,0,136 0/0:2,0:2:3:0,3,39 +chr8 101053980 rs922207 C T 1062.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=6.924;DB;DP=105;Dels=0.00;FS=17.087;HaplotypeScore=1.5674;MLEAC=4;MLEAF=0.500;MQ=33.18;MQ0=0;MQRankSum=-1.486;QD=10.12;ReadPosRankSum=1.276;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,14:28:99:439,0,269 0/1:16,10:26:99:275,0,366 0/1:28,14:42:99:377,0,593 0/1:6,3:9:14:14,0,208 +chr8 101117554 rs1471294 T G 79.31 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.422;DB;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=12.7057;MLEAC=2;MLEAF=0.250;MQ=19.72;MQ0=0;MQRankSum=2.398;QD=2.48;ReadPosRankSum=1.804;SB=18.90 GT:AD:DP:GQ:PL 0/0:16,0:16:9:0,9,80 0/1:10,4:14:41:82,0,41 0/1:15,2:17:37:37,0,97 0/0:3,0:4:3:0,3,24 +chr8 101612715 . A T 51.51 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.364;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3582;MLEAC=3;MLEAF=0.375;MQ=34.89;MQ0=0;MQRankSum=-2.085;QD=0.76;ReadPosRankSum=0.112;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,1:27:34:0,34,602 0/1:28,2:30:9:9,0,504 0/1:24,4:28:78:78,0,360 0/1:9,1:10:5:5,0,217 +chr8 101730301 . C T 109.93 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.543;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=14.6965;MLEAC=2;MLEAF=0.333;MQ=22.28;MQ0=0;MQRankSum=1.267;QD=2.04;ReadPosRankSum=1.991;SB=11.20 GT:AD:DP:GQ:PL 0/1:17,8:26:13:133,0,13 0/0:22,1:24:12:0,12,119 0/1:25,3:28:15:15,0,101 ./. +chr8 102589669 . A C 87.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.983;DP=148;Dels=0.00;FS=51.244;HaplotypeScore=8.1805;MLEAC=3;MLEAF=0.375;MQ=30.39;MQ0=0;MQRankSum=-6.189;QD=0.72;ReadPosRankSum=0.547;SB=1.93 GT:AD:DP:GQ:PL 0/0:22,5:27:29:0,29,647 0/1:34,6:40:11:11,0,979 0/1:28,13:41:91:91,0,690 0/1:32,8:40:28:28,0,847 +chr8 103359355 . A T 135.31 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.426;DP=161;Dels=0.02;FS=0.000;HaplotypeScore=12.7618;MLEAC=4;MLEAF=0.500;MQ=29.54;MQ0=0;MQRankSum=1.023;QD=0.84;ReadPosRankSum=2.508;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:36,2:38:11:11,0,457 0/1:42,2:44:9:9,0,570 0/1:37,4:41:56:56,0,522 0/1:30,5:35:99:101,0,475 +chr8 103855691 rs2304344 C T 255.84 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.263;DB;DP=33;Dels=0.00;FS=2.755;HaplotypeScore=0.4881;MLEAC=3;MLEAF=0.375;MQ=32.45;MQ0=0;MQRankSum=-0.394;QD=12.79;ReadPosRankSum=1.230;SB=1.058e-03 GT:AD:DP:GQ:PL 0/0:11,0:13:27:0,27,345 0/1:5,7:12:99:229,0,152 0/1:3,1:4:33:33,0,33 1/1:3,1:4:3:38,3,0 +chr8 104419902 . T A 69.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.723;DP=139;Dels=0.01;FS=40.943;HaplotypeScore=1.7042;MLEAC=2;MLEAF=0.250;MQ=35.81;MQ0=0;MQRankSum=-3.833;QD=0.74;ReadPosRankSum=0.446;SB=-4.068e+00 GT:AD:DP:GQ:PL 0/0:31,1:32:90:0,90,1140 0/1:36,6:42:91:91,0,929 0/1:47,6:53:18:18,0,1207 0/0:10,1:11:0:0,0,239 +chr8 104427359 rs3134295 A C 593.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.246;DB;DP=130;Dels=0.01;FS=5.406;HaplotypeScore=0.9836;MLEAC=3;MLEAF=0.375;MQ=29.46;MQ0=0;MQRankSum=-1.366;QD=6.00;ReadPosRankSum=1.209;SB=-1.890e+02 GT:AD:DP:GQ:PL 0/0:31,0:31:66:0,66,797 0/1:19,8:27:99:144,0,424 0/1:23,14:37:99:309,0,501 0/1:25,9:34:99:184,0,519 +chr8 107371924 rs2022982 C A 2949.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=7.462;DB;DP=171;Dels=0.00;FS=2.323;HaplotypeScore=1.3078;MLEAC=5;MLEAF=0.625;MQ=36.01;MQ0=0;MQRankSum=-0.797;QD=17.25;ReadPosRankSum=1.302;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:29,23:52:99:752,0,642 1/1:2,35:37:99:1351,105,0 0/1:42,21:64:99:672,0,834 0/1:11,7:18:99:220,0,281 +chr8 109215606 . T A 115.59 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.001;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.8404;MLEAC=3;MLEAF=0.375;MQ=27.44;MQ0=0;MQRankSum=-2.952;QD=1.89;ReadPosRankSum=0.683;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,4:18:31:31,0,201 0/1:19,7:26:99:120,0,398 0/1:15,2:17:4:4,0,246 0/0:2,0:2:3:0,3,42 +chr8 109391566 . G C 39.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.569;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=6.3648;MLEAC=2;MLEAF=0.250;MQ=25.61;MQ0=0;MQRankSum=1.928;QD=1.04;ReadPosRankSum=-1.068;SB=-5.779e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:39:0,39,374 0/1:20,3:23:59:59,0,317 0/0:17,0:17:30:0,30,304 0/1:14,1:15:22:22,0,148 +chr8 109465444 . T G 55.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.518;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.0543;MLEAC=4;MLEAF=0.500;MQ=24.44;MQ0=0;MQRankSum=-0.117;QD=1.69;ReadPosRankSum=1.051;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,1:4:18:23,0,18 0/1:10,3:13:34:34,0,41 0/1:8,1:9:17:17,0,60 0/1:6,1:7:24:24,0,29 +chr8 110255501 . T C 223.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.196;DP=211;Dels=0.01;FS=9.476;HaplotypeScore=62.1917;MLEAC=3;MLEAF=0.375;MQ=21.22;MQ0=0;MQRankSum=-0.558;QD=1.34;ReadPosRankSum=-0.129;SB=0.815 GT:AD:DP:GQ:PL 0/0:39,2:43:12:0,12,325 0/1:48,9:57:88:88,0,266 0/1:53,6:60:91:91,0,136 0/1:41,7:49:87:87,0,212 +chr8 110301998 rs2980618 T C 642.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.493;DB;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.1605;MLEAC=3;MLEAF=0.375;MQ=30.24;MQ0=0;MQRankSum=2.203;QD=11.48;ReadPosRankSum=0.515;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:14,12:27:99:381,0,256 0/0:24,0:24:66:0,66,752 0/1:16,9:25:99:241,0,371 0/1:2,2:4:28:64,0,28 +chr8 110454273 . A C 33.26 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.344;DP=326;Dels=0.01;FS=30.576;HaplotypeScore=12.7680;MLEAC=2;MLEAF=0.250;MQ=34.61;MQ0=0;MQRankSum=-0.982;QD=0.22;ReadPosRankSum=-0.047;SB=-2.478e+00 GT:AD:DP:GQ:PL 0/0:83,0:83:99:0,180,2102 0/0:85,5:90:27:0,27,1717 0/1:89,7:96:13:13,0,1927 0/1:49,5:54:61:61,0,856 +chr8 110465014 . C T 39.06 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.430;DP=177;Dels=0.00;FS=31.567;HaplotypeScore=4.5348;MLEAC=1;MLEAF=0.125;MQ=29.64;MQ0=0;MQRankSum=-1.772;QD=0.72;ReadPosRankSum=1.346;SB=-4.074e+01 GT:AD:DP:GQ:PL 0/0:47,2:49:16:0,16,637 0/1:48,6:54:75:75,0,646 0/0:62,2:64:31:0,31,786 0/0:10,0:10:15:0,15,176 +chr8 110489620 rs1783148 A T 1748.79 . AC=6;AF=0.750;AN=8;BaseQRankSum=-3.803;DB;DP=164;Dels=0.01;FS=22.066;HaplotypeScore=4.9392;MLEAC=6;MLEAF=0.750;MQ=36.26;MQ0=0;MQRankSum=-3.987;QD=10.66;ReadPosRankSum=2.810;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/1:35,9:44:99:197,0,1083 0/1:45,14:59:99:344,0,1345 1/1:20,27:47:48:928,48,0 1/1:3,9:12:27:326,27,0 +chr8 110491964 rs1630134 A G 175.58 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.293;DB;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.2433;MLEAC=6;MLEAF=0.750;MQ=33.13;MQ0=0;MQRankSum=0.439;QD=8.78;ReadPosRankSum=-0.049;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:27:27,0,132 0/1:6,2:8:27:27,0,149 1/1:1,1:2:3:43,3,0 1/1:2,3:5:9:122,9,0 +chr8 113303909 . T A 182.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.058;DP=154;Dels=0.01;FS=2.344;HaplotypeScore=10.5463;MLEAC=4;MLEAF=0.500;MQ=25.94;MQ0=0;MQRankSum=0.004;QD=1.18;ReadPosRankSum=-2.107;SB=-2.245e+01 GT:AD:DP:GQ:PL 0/1:41,3:45:9:9,0,490 0/1:34,9:43:99:101,0,331 0/1:41,8:49:87:87,0,473 0/1:13,2:15:27:27,0,77 +chr8 117862767 . T G 181.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.842;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.8552;MLEAC=4;MLEAF=0.500;MQ=24.76;MQ0=0;MQRankSum=-0.142;QD=1.80;ReadPosRankSum=1.012;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,6:32:99:102,0,160 0/1:27,3:31:48:48,0,315 0/1:22,4:26:48:48,0,153 0/1:8,1:12:26:26,0,46 +chr8 119396007 rs7006721 C T 49.01 . AC=4;AF=1.00;AN=4;DB;DP=7;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=21.06;MQ0=0;QD=24.50;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:40,3,0 ./. 1/1:0,1:1:3:42,3,0 ./. +chr8 119592906 . A C 55.46 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.315;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=5.5181;MLEAC=2;MLEAF=0.250;MQ=28.61;MQ0=0;MQRankSum=0.268;QD=1.29;ReadPosRankSum=2.055;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:29,0:29:18:0,18,203 0/1:22,3:25:58:58,0,242 0/0:20,1:21:1:0,1,200 0/1:16,2:18:37:37,0,164 +chr8 120435062 . T G 146.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.736;DP=63;Dels=0.00;FS=27.498;HaplotypeScore=14.1268;MLEAC=4;MLEAF=0.500;MQ=17.55;MQ0=0;MQRankSum=0.992;QD=2.33;ReadPosRankSum=-2.126;SB=0.538 GT:AD:DP:GQ:PL 0/1:10,3:13:44:44,0,54 0/1:15,5:21:82:91,0,82 0/1:12,3:15:19:19,0,36 0/1:12,2:14:32:35,0,32 +chr8 120492809 . A C 375.18 . AC=5;AF=0.625;AN=8;BaseQRankSum=-4.202;DP=86;Dels=0.00;FS=66.875;HaplotypeScore=2.4490;MLEAC=5;MLEAF=0.625;MQ=17.59;MQ0=0;MQRankSum=4.726;QD=4.36;ReadPosRankSum=1.129;SB=3.75 GT:AD:DP:GQ:PL 0/1:14,4:18:17:47,0,17 0/1:13,1:14:28:28,0,38 0/1:26,7:33:99:170,0,203 1/1:14,7:21:2:172,2,0 +chr8 120613061 . A T 34.44 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.262;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=6.5729;MLEAC=2;MLEAF=0.333;MQ=18.46;MQ0=0;MQRankSum=0.698;QD=1.44;ReadPosRankSum=0.262;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,1:13:13:13,0,101 0/1:7,4:11:57:58,0,57 ./. 0/0:2,0:2:3:0,3,35 +chr8 120628436 . A T 99.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.959;DP=70;Dels=0.03;FS=0.000;HaplotypeScore=10.1536;MLEAC=3;MLEAF=0.375;MQ=31.82;MQ0=0;MQRankSum=-2.226;QD=1.50;ReadPosRankSum=2.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:33:33,0,222 0/1:14,5:19:95:95,0,303 0/1:26,4:30:12:12,0,651 0/0:4,0:4:3:0,3,44 +chr8 121021343 . A G 422.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.306;DP=108;Dels=0.01;FS=29.139;HaplotypeScore=4.2194;MLEAC=4;MLEAF=0.500;MQ=34.32;MQ0=0;MQRankSum=-3.475;QD=3.91;ReadPosRankSum=0.717;SB=-1.513e-01 GT:AD:DP:GQ:PL 0/1:20,7:27:99:170,0,532 0/1:18,5:23:99:110,0,437 0/1:24,2:26:14:14,0,504 0/1:22,9:31:99:171,0,472 +chr8 121823891 . T C 72.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.071;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.6836;MLEAC=3;MLEAF=0.375;MQ=28.76;MQ0=0;MQRankSum=0.495;QD=3.82;ReadPosRankSum=1.202;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:48:58,0,48 1/1:5,1:7:3:33,3,0 0/0:3,0:3:9:0,9,97 0/1:5,1:6:25:25,0,49 +chr8 124114560 rs10956117 T C 376.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.656;DB;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.4406;MLEAC=2;MLEAF=0.250;MQ=37.16;MQ0=0;MQRankSum=-5.771;QD=5.62;ReadPosRankSum=-0.504;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,12:28:99:279,0,560 0/1:28,11:39:99:139,0,897 0/0:39,0:40:99:0,117,1541 0/0:14,0:14:42:0,42,563 +chr8 124448651 . T G 122.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.506;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.1635;MLEAC=4;MLEAF=0.500;MQ=34.30;MQ0=0;MQRankSum=-0.645;QD=1.70;ReadPosRankSum=1.180;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,3:17:55:55,0,316 0/1:24,3:27:37:37,0,561 0/1:18,2:20:34:34,0,254 0/1:6,2:8:39:39,0,98 +chr8 124593543 rs10091164 C T 46.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=23.65;MQ0=0;MQRankSum=1.026;QD=9.20;ReadPosRankSum=-1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:3:3:37,3,0 ./. 1/1:1,1:2:3:42,3,0 +chr8 124710729 rs2294013 C T 693.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.923;DB;DP=164;Dels=0.00;FS=12.236;HaplotypeScore=9.9984;MLEAC=2;MLEAF=0.250;MQ=29.94;MQ0=0;MQRankSum=0.277;QD=8.78;ReadPosRankSum=0.626;SB=-2.270e+02 GT:AD:DP:GQ:PL 0/1:23,10:33:99:253,0,654 0/1:28,18:46:99:482,0,588 0/0:45,0:45:99:0,111,1303 0/0:40,0:40:87:0,87,998 +chr8 125033678 rs7820272 G A 827.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.086;DB;DP=114;Dels=0.00;FS=16.529;HaplotypeScore=4.7136;MLEAC=4;MLEAF=0.500;MQ=25.48;MQ0=0;MQRankSum=0.115;QD=7.26;ReadPosRankSum=1.585;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,9:27:99:181,0,347 0/1:14,14:28:99:262,0,158 0/1:19,14:33:99:339,0,297 0/1:21,5:26:88:88,0,487 +chr8 125115420 rs56132579 G A 856.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.939;DB;DP=348;Dels=0.00;FS=0.680;HaplotypeScore=10.6491;MLEAC=1;MLEAF=0.125;MQ=34.96;MQ0=0;MQRankSum=-2.185;QD=10.58;ReadPosRankSum=0.638;SB=-3.870e+02 GT:AD:DP:GQ:PL 0/1:46,33:80:99:893,0,1437 0/0:90,0:90:99:0,244,2999 0/0:97,0:97:99:0,256,3081 0/0:80,0:80:99:0,220,2788 +chr8 125154881 . C G 60.30 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.908;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.6892;MLEAC=2;MLEAF=0.250;MQ=23.92;MQ0=0;MQRankSum=1.719;QD=1.51;ReadPosRankSum=-0.551;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,1:19:30:0,30,344 0/0:23,0:23:27:0,27,261 0/1:25,1:26:6:6,0,152 0/1:10,4:14:78:93,0,78 +chr8 125534324 . A G 137.12 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.388;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=4.2626;MLEAC=8;MLEAF=1.00;MQ=21.04;MQ0=0;MQRankSum=0.674;QD=5.48;ReadPosRankSum=0.551;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,3:7:6:59,6,0 1/1:3,3:6:6:52,6,0 1/1:6,1:7:3:40,3,0 1/1:1,3:4:3:23,3,0 +chr8 126448550 . T C 215.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.214;DP=255;Dels=0.00;FS=78.374;HaplotypeScore=2.9554;MLEAC=2;MLEAF=0.250;MQ=36.61;MQ0=0;MQRankSum=-4.612;QD=1.74;ReadPosRankSum=-3.573;SB=1.73 GT:AD:DP:GQ:PL 0/0:55,1:56:96:0,96,1658 0/1:52,8:60:99:104,0,1618 0/0:70,4:75:69:0,69,1946 0/1:53,10:64:99:153,0,1315 +chr8 128099166 rs7007694 C T 270.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.106;DB;DP=80;Dels=0.01;FS=3.676;HaplotypeScore=0.2493;MLEAC=4;MLEAF=0.500;MQ=19.57;MQ0=0;MQRankSum=-1.473;QD=3.39;ReadPosRankSum=2.982;SB=-7.772e+01 GT:AD:DP:GQ:PL 0/1:13,9:22:29:29,0,107 0/1:9,16:25:58:157,0,58 0/1:12,4:16:11:11,0,175 0/1:8,8:16:52:116,0,52 +chr8 128428656 rs114126788 A C 47.98 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.226;DB;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4622;MLEAC=4;MLEAF=0.500;MQ=13.38;MQ0=0;MQRankSum=2.602;QD=1.37;ReadPosRankSum=-2.076;SB=-2.876e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:56,6,0 0/0:31,0:31:24:0,24,260 1/1:18,2:20:3:23,3,0 0/1:12,1:13:15:15,0,49 +chr8 130760774 rs4733559 C T 2971.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.655;DB;DP=249;Dels=0.00;FS=2.663;HaplotypeScore=4.9395;MLEAC=4;MLEAF=0.500;MQ=34.87;MQ0=0;MQRankSum=-4.045;QD=16.06;ReadPosRankSum=1.001;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:9,50:59:99:1687,125,0 0/0:61,0:64:99:0,129,1591 0/1:38,26:64:99:706,0,734 0/1:38,23:61:99:627,0,656 +chr8 133022933 . T G 69.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.325;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6049;MLEAC=3;MLEAF=0.375;MQ=31.82;MQ0=0;MQRankSum=-2.236;QD=0.79;ReadPosRankSum=2.307;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,1:28:1:1,0,323 0/1:20,2:22:36:36,0,307 0/1:33,5:38:72:72,0,657 0/0:11,1:12:18:0,18,245 +chr8 133062132 . A G 33.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.234;DP=90;Dels=0.03;FS=2.412;HaplotypeScore=22.3440;MLEAC=2;MLEAF=0.250;MQ=23.73;MQ0=0;MQRankSum=-2.453;QD=0.85;ReadPosRankSum=2.186;SB=0.956 GT:AD:DP:GQ:PL 0/0:16,4:21:3:0,3,240 0/0:25,1:28:36:0,36,427 0/1:20,5:25:30:30,0,268 0/1:9,3:13:30:44,0,30 +chr8 133883545 . T G 422.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.008;DP=87;Dels=0.02;FS=2.888;HaplotypeScore=0.7766;MLEAC=4;MLEAF=0.500;MQ=31.98;MQ0=0;MQRankSum=-3.297;QD=4.86;ReadPosRankSum=4.706;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,5:23:99:129,0,185 0/1:16,5:21:99:125,0,176 0/1:21,9:30:99:167,0,322 0/1:8,3:11:44:44,0,178 +chr8 133900605 . A G 84.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.430;DP=152;Dels=0.01;FS=38.775;HaplotypeScore=10.9737;MLEAC=2;MLEAF=0.250;MQ=31.00;MQ0=0;MQRankSum=-2.521;QD=1.12;ReadPosRankSum=-1.690;SB=-3.030e+00 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,105,1286 0/1:31,5:36:32:32,0,683 0/0:33,2:35:3:0,3,636 0/1:34,6:40:93:93,0,785 +chr8 133960936 rs2246625 T C 2272.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.419;DB;DP=151;Dels=0.00;FS=2.113;HaplotypeScore=3.2937;MLEAC=4;MLEAF=0.500;MQ=35.18;MQ0=0;MQRankSum=-0.699;QD=15.05;ReadPosRankSum=1.122;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,16:32:99:509,0,478 0/1:17,21:38:99:715,0,458 0/1:17,21:38:99:580,0,489 0/1:26,17:43:99:511,0,605 +chr8 133961011 rs4736614 T C 921.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.322;DB;DP=261;Dels=0.00;FS=6.869;HaplotypeScore=4.4328;MLEAC=1;MLEAF=0.125;MQ=37.49;MQ0=0;MQRankSum=-1.171;QD=14.18;ReadPosRankSum=1.054;SB=-1.650e+02 GT:AD:DP:GQ:PL 0/0:59,0:60:99:0,169,2233 0/1:36,29:65:99:958,0,942 0/0:77,0:77:99:0,199,2625 0/0:59,0:59:99:0,156,2052 +chr8 134042207 . G C 50.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.710;DP=121;Dels=0.02;FS=11.770;HaplotypeScore=3.8749;MLEAC=2;MLEAF=0.250;MQ=32.04;MQ0=0;MQRankSum=-3.370;QD=0.72;ReadPosRankSum=-1.220;SB=-1.310e+00 GT:AD:DP:GQ:PL 0/1:32,4:36:18:18,0,827 0/1:27,6:33:73:73,0,659 0/0:30,2:32:5:0,5,646 0/0:16,2:18:16:0,16,405 +chr8 134233006 . C G 141.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.461;DP=81;Dels=0.00;FS=2.374;HaplotypeScore=2.9359;MLEAC=3;MLEAF=0.375;MQ=29.56;MQ0=0;MQRankSum=0.411;QD=2.39;ReadPosRankSum=0.761;SB=1.19 GT:AD:DP:GQ:PL 0/0:21,1:22:10:0,10,380 0/1:17,3:20:43:43,0,304 0/1:15,3:18:61:61,0,253 0/1:17,4:21:80:80,0,141 +chr8 134271387 . A T 156.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.759;DP=131;Dels=0.01;FS=51.693;HaplotypeScore=11.2029;MLEAC=4;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=-5.101;QD=1.20;ReadPosRankSum=1.787;SB=-3.658e-02 GT:AD:DP:GQ:PL 0/1:15,8:23:22:22,0,325 0/1:28,5:33:31:31,0,473 0/1:35,9:44:78:78,0,580 0/1:21,9:30:68:68,0,266 +chr8 134420845 . A C 51.76 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.786;DP=281;Dels=0.00;FS=10.707;HaplotypeScore=1.1706;MLEAC=1;MLEAF=0.125;MQ=8.61;MQ0=0;MQRankSum=2.913;QD=0.73;ReadPosRankSum=-1.540;SB=0.804 GT:AD:DP:GQ:PL 0/0:68,0:68:12:0,12,133 0/0:65,0:65:3:0,3,28 0/0:77,0:77:12:0,12,132 0/1:66,5:71:75:87,0,75 +chr8 134975241 . A T 33.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.975;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8785;MLEAC=3;MLEAF=0.375;MQ=28.85;MQ0=0;MQRankSum=-1.675;QD=0.97;ReadPosRankSum=2.225;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:3:3,0,220 0/1:13,1:14:12:12,0,113 0/0:10,0:10:21:0,21,247 0/1:6,3:9:34:59,0,34 +chr8 135991148 . C T 48.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.176;DP=37;Dels=0.03;FS=3.013;HaplotypeScore=1.7866;MLEAC=3;MLEAF=0.375;MQ=26.88;MQ0=0;MQRankSum=0.427;QD=1.68;ReadPosRankSum=-2.485;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:24:24,0,85 0/0:7,1:8:9:0,9,77 0/1:7,2:9:54:54,0,71 0/1:11,1:12:13:13,0,180 +chr8 139151300 . A G 73.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.552;DP=110;Dels=0.01;FS=25.149;HaplotypeScore=3.5226;MLEAC=3;MLEAF=0.375;MQ=36.14;MQ0=0;MQRankSum=-2.283;QD=0.90;ReadPosRankSum=1.116;SB=-3.711e-01 GT:AD:DP:GQ:PL 0/1:24,3:27:11:11,0,659 0/0:28,1:29:43:0,43,734 0/1:24,4:28:57:57,0,585 0/1:21,4:25:48:48,0,397 +chr8 139165272 rs7835712 T C 354.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.300;DB;DP=106;Dels=0.03;FS=1.089;HaplotypeScore=4.5714;MLEAC=3;MLEAF=0.375;MQ=29.70;MQ0=0;MQRankSum=0.699;QD=5.00;ReadPosRankSum=-1.731;SB=-1.829e+02 GT:AD:DP:GQ:PL 0/0:34,0:34:78:0,78,947 0/1:20,5:25:67:128,0,67 0/1:23,7:30:99:182,0,550 0/1:11,3:14:88:88,0,214 +chr8 139618754 rs4471041 T C 387.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.678;DB;DP=55;Dels=0.00;FS=5.190;HaplotypeScore=1.1481;MLEAC=3;MLEAF=0.375;MQ=31.59;MQ0=0;MQRankSum=2.509;QD=9.01;ReadPosRankSum=-0.797;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:33:0,33,387 0/1:9,6:16:3:213,0,3 0/1:14,4:18:99:117,0,317 0/1:6,3:9:93:100,0,93 +chr8 139635920 rs7839790 T A 6748.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.143;DB;DP=237;Dels=0.00;FS=4.412;HaplotypeScore=0.7479;MLEAC=7;MLEAF=0.875;MQ=35.14;MQ0=0;MQRankSum=0.781;QD=28.47;ReadPosRankSum=3.536;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:44,16:60:99:456,0,1269 1/1:2,59:61:99:2160,142,0 1/1:2,60:62:99:2200,118,0 1/1:2,52:54:99:1932,123,0 +chr8 139809173 . A C 137.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.348;DP=181;Dels=0.02;FS=3.551;HaplotypeScore=18.5209;MLEAC=4;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=-3.768;QD=0.76;ReadPosRankSum=2.067;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:51,8:59:76:76,0,1163 0/1:36,9:45:79:79,0,801 0/1:48,8:56:5:5,0,1097 0/1:15,2:17:19:19,0,268 +chr8 139946839 rs4259443 A C 38.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=7;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=17.26;MQ0=0;MQRankSum=0.736;QD=9.50;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:32,3,0 ./. 1/1:1,1:2:3:39,3,0 ./. +chr8 140347881 rs7823302 A C 46.01 . AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=30.39;MQ0=0;QD=23.00;SB=-3.400e+01 GT:AD:DP:GQ:PL 1/1:0,1:1:3:37,3,0 ./. 1/1:0,1:1:3:42,3,0 ./. +chr8 141297746 . C T 584.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.594;DP=215;Dels=0.00;FS=151.389;HaplotypeScore=1.6457;MLEAC=4;MLEAF=0.500;MQ=35.17;MQ0=0;MQRankSum=-2.080;QD=2.72;ReadPosRankSum=3.263;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:46,10:56:99:190,0,1135 0/1:34,12:46:99:219,0,762 0/1:57,8:65:99:109,0,1432 0/1:41,7:48:99:109,0,885 +chr8 141549326 rs115826075 C T 471.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.702;DB;DP=69;Dels=0.00;FS=2.638;HaplotypeScore=1.3804;MLEAC=3;MLEAF=0.375;MQ=31.58;MQ0=0;MQRankSum=-2.177;QD=10.04;ReadPosRankSum=0.667;SB=-1.149e-02 GT:AD:DP:GQ:PL 0/1:11,7:18:99:202,0,227 0/0:22,0:22:42:0,42,512 0/1:9,6:15:99:148,0,260 0/1:8,6:14:99:165,0,128 +chr8 141744750 . G C 72.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.293;DP=96;Dels=0.00;FS=4.632;HaplotypeScore=4.1719;MLEAC=3;MLEAF=0.375;MQ=31.51;MQ0=0;MQRankSum=-3.024;QD=0.88;ReadPosRankSum=-2.360;SB=0.036 GT:AD:DP:GQ:PL 0/1:21,4:25:88:88,0,395 0/1:25,3:28:19:19,0,564 0/1:24,5:29:8:8,0,526 0/0:13,0:13:30:0,30,359 +chr8 141745387 . T G 286.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.378;DP=61;Dels=0.02;FS=21.298;HaplotypeScore=4.4110;MLEAC=3;MLEAF=0.375;MQ=29.46;MQ0=0;MQRankSum=-3.359;QD=6.52;ReadPosRankSum=2.115;SB=-1.541e+01 GT:AD:DP:GQ:PL 0/1:8,8:16:99:180,0,130 0/1:9,4:13:51:51,0,256 0/0:13,2:16:6:0,6,330 0/1:8,7:15:98:98,0,117 +chr8 141779826 rs10875458 C A 242.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.334;DB;DP=98;Dels=0.02;FS=4.693;HaplotypeScore=1.6010;MLEAC=3;MLEAF=0.375;MQ=27.16;MQ0=0;MQRankSum=-3.904;QD=3.47;ReadPosRankSum=0.884;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,10:26:99:218,0,392 0/0:28,0:28:75:0,75,870 0/1:21,7:29:39:39,0,501 0/1:10,3:13:29:29,0,211 +chr8 141900708 . A G 47.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.257;DP=195;Dels=0.00;FS=64.579;HaplotypeScore=1.8192;MLEAC=2;MLEAF=0.250;MQ=35.93;MQ0=0;MQRankSum=-2.504;QD=0.56;ReadPosRankSum=2.319;SB=0.584 GT:AD:DP:GQ:PL 0/1:47,6:53:72:72,0,1267 0/0:45,2:47:61:0,61,1401 0/0:62,1:63:99:0,122,1839 0/1:30,2:32:17:17,0,547 +chr8 142170822 . T G 30.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.365;DP=74;Dels=0.01;FS=7.536;HaplotypeScore=7.4638;MLEAC=3;MLEAF=0.375;MQ=28.92;MQ0=0;MQRankSum=-0.747;QD=0.54;ReadPosRankSum=0.567;SB=2.15 GT:AD:DP:GQ:PL 0/0:16,2:18:6:0,6,299 0/1:16,2:18:21:21,0,234 0/1:18,2:20:35:35,0,231 0/1:16,1:17:16:16,0,181 +chr8 142186912 . C G 44.97 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.258;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=11.2271;MLEAC=4;MLEAF=0.500;MQ=25.12;MQ0=0;MQRankSum=-1.330;QD=0.74;ReadPosRankSum=-0.347;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:39:39,0,233 0/1:14,2:16:28:28,0,201 0/1:14,4:18:4:4,0,232 0/1:7,1:8:15:15,0,76 +chr8 142476564 . T A 82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.866;DP=22;Dels=0.00;FS=9.397;HaplotypeScore=1.4464;MLEAC=3;MLEAF=0.375;MQ=28.10;MQ0=0;MQRankSum=-0.289;QD=5.86;ReadPosRankSum=-1.938;SB=-7.786e-01 GT:AD:DP:GQ:PL 0/1:3,1:4:22:22,0,47 0/1:2,4:6:54:71,0,54 0/0:8,0:8:15:0,15,181 0/1:3,1:4:32:32,0,55 +chr8 142681271 rs7838731 A G 30.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=17.78;MQ0=0;MQRankSum=0.736;QD=6.00;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3:29,3,0 1/1:3,1:4:3:34,3,0 +chr8 142840582 rs11776017 A G 67.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.727;DB;DP=8;Dels=0.00;FS=10.000;HaplotypeScore=0.2217;MLEAC=6;MLEAF=1.00;MQ=23.52;MQ0=0;MQRankSum=0.727;QD=9.61;ReadPosRankSum=-0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:28,3,0 1/1:1,1:2:3:43,3,0 1/1:2,1:3:3:31,3,0 +chr8 142988657 rs7350089 G A 48.77 . AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;QD=24.38;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6:80,6,0 ./. ./. +chr8 143352978 rs11777062 T G 625.64 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.646;DB;DP=22;Dels=0.00;FS=20.569;HaplotypeScore=0.1446;MLEAC=8;MLEAF=1.00;MQ=32.06;MQ0=0;MQRankSum=2.646;QD=28.44;ReadPosRankSum=0.635;SB=-8.398e+01 GT:AD:DP:GQ:PL 1/1:1,2:3:6:78,6,0 1/1:3,6:9:18:243,18,0 1/1:1,7:8:21:272,21,0 1/1:0,2:2:6:71,6,0 +chr8 143558780 . C A 34.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.215;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=14.1579;MLEAC=2;MLEAF=0.250;MQ=31.42;MQ0=0;MQRankSum=-2.262;QD=0.85;ReadPosRankSum=-0.248;SB=-1.022e-01 GT:AD:DP:GQ:PL 0/0:24,0:24:30:0,30,332 0/0:15,0:15:15:0,15,151 0/1:14,2:16:16:16,0,247 0/1:20,3:24:59:59,0,229 +chr8 143614932 . G A 95.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.574;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.0297;MLEAC=1;MLEAF=0.125;MQ=28.66;MQ0=0;MQRankSum=0.784;QD=8.73;ReadPosRankSum=0.035;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,5:11:99:132,0,124 0/0:22,0:22:51:0,51,596 0/0:15,1:16:33:0,33,380 0/0:15,0:15:36:0,36,413 +chr8 143853429 . C T 271.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.022;DP=249;Dels=0.00;FS=0.732;HaplotypeScore=7.2122;MLEAC=4;MLEAF=0.500;MQ=18.69;MQ0=0;MQRankSum=3.034;QD=1.09;ReadPosRankSum=-3.172;SB=-1.318e+02 GT:AD:DP:GQ:PL 0/1:63,10:73:15:15,0,670 0/1:56,6:62:17:17,0,382 0/1:63,8:71:99:150,0,363 0/1:36,6:42:99:132,0,173 +chr8 143867045 . G C 103.12 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.412;DP=65;Dels=0.00;FS=23.678;HaplotypeScore=4.8731;MLEAC=2;MLEAF=0.250;MQ=31.57;MQ0=0;MQRankSum=-1.102;QD=3.44;ReadPosRankSum=-1.147;SB=-1.137e-01 GT:AD:DP:GQ:PL 0/1:10,3:13:71:71,0,200 0/1:13,4:17:72:72,0,209 0/0:11,2:13:2:0,2,209 0/0:20,1:22:19:0,19,510 +chr8 143998662 rs13276226 G A 82.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.881;DB;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=1.3745;MLEAC=1;MLEAF=0.125;MQ=23.22;MQ0=0;MQRankSum=-1.729;QD=5.93;ReadPosRankSum=0.859;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/1:6,8:14:89:119,0,89 0/0:15,0:16:36:0,36,369 0/0:15,0:16:33:0,33,298 0/0:22,0:22:54:0,54,577 +chr8 144391728 rs7386475 A G 1925.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.493;DB;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.2416;MLEAC=4;MLEAF=0.500;MQ=39.88;MQ0=0;MQRankSum=-5.698;QD=18.88;ReadPosRankSum=-0.187;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/0:30,0:30:81:0,81,1121 1/1:1,30:31:90:1190,90,0 0/1:26,15:41:99:466,0,882 0/1:19,11:30:99:318,0,552 +chr8 144400231 . A C 68.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.026;DP=107;Dels=0.01;FS=84.208;HaplotypeScore=3.1106;MLEAC=2;MLEAF=0.250;MQ=33.55;MQ0=0;MQRankSum=-4.530;QD=1.37;ReadPosRankSum=0.446;SB=-3.241e+00 GT:AD:DP:GQ:PL 0/1:16,4:20:34:34,0,580 0/1:23,7:30:75:75,0,656 0/0:26,1:27:27:0,27,670 0/0:27,2:29:4:0,4,703 +chr8 144459559 . C G 78.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.515;DP=69;Dels=0.00;FS=41.629;HaplotypeScore=3.5011;MLEAC=3;MLEAF=0.375;MQ=30.20;MQ0=0;MQRankSum=0.945;QD=1.43;ReadPosRankSum=0.609;SB=-1.198e+00 GT:AD:DP:GQ:PL 0/0:13,1:14:3:0,3,224 0/1:14,2:16:27:27,0,237 0/1:20,3:23:52:52,0,343 0/1:14,2:16:41:41,0,224 +chr8 144621299 . G C 184.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.940;DP=118;Dels=0.00;FS=81.037;HaplotypeScore=7.2953;MLEAC=3;MLEAF=0.375;MQ=28.17;MQ0=0;MQRankSum=1.880;QD=2.03;ReadPosRankSum=0.422;SB=1.32 GT:AD:DP:GQ:PL 0/1:23,4:27:75:75,0,370 0/1:23,6:29:71:71,0,455 0/1:30,5:35:82:82,0,457 0/0:27,0:27:51:0,51,519 +chr8 144652899 . G C 99.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.626;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0060;MLEAC=3;MLEAF=0.375;MQ=32.77;MQ0=0;MQRankSum=-0.423;QD=2.20;ReadPosRankSum=-0.017;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:12:0,12,119 0/1:10,2:12:50:50,0,84 0/1:13,3:16:61:61,0,304 0/1:14,3:17:31:31,0,221 +chr8 144659625 . G T 44.05 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.085;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.2498;MLEAC=2;MLEAF=0.250;MQ=30.00;MQ0=0;MQRankSum=-1.268;QD=8.81;ReadPosRankSum=1.268;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,2:3:32:58,0,32 0/0:2,0:2:3:0,3,39 0/0:6,0:7:12:0,12,127 0/1:1,1:2:26:26,0,27 +chr8 144660189 rs896953 A G 145.71 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.216;DB;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.0832;MLEAC=5;MLEAF=0.625;MQ=33.00;MQ0=0;MQRankSum=-0.848;QD=9.11;ReadPosRankSum=0.553;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:68,6,0 0/0:8,0:8:18:0,18,249 0/1:7,1:8:18:18,0,156 1/1:1,3:4:9:108,9,0 +chr8 144671777 rs141488516 C G 33.37 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.441;DB;DP=38;Dels=0.00;FS=9.634;HaplotypeScore=0.6655;MLEAC=3;MLEAF=0.375;MQ=26.42;MQ0=0;MQRankSum=0.337;QD=1.11;ReadPosRankSum=0.337;SB=1.69 GT:AD:DP:GQ:PL 0/1:6,1:7:17:17,0,99 0/1:11,2:13:47:47,0,122 0/1:9,1:10:12:12,0,88 0/0:8,0:8:21:0,21,242 +chr8 144672032 . G T 194.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.083;DP=55;Dels=0.00;FS=28.380;HaplotypeScore=5.3475;MLEAC=4;MLEAF=0.500;MQ=25.33;MQ0=0;MQRankSum=-0.939;QD=3.54;ReadPosRankSum=-1.796;SB=-1.060e+00 GT:AD:DP:GQ:PL 0/1:7,3:10:70:70,0,114 0/1:10,1:11:4:4,0,165 0/1:8,3:11:66:66,0,67 0/1:17,6:23:96:96,0,329 +chr8 144803885 . G C 47.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.880;DP=90;Dels=0.02;FS=60.243;HaplotypeScore=16.2064;MLEAC=3;MLEAF=0.375;MQ=24.67;MQ0=0;MQRankSum=-2.210;QD=0.77;ReadPosRankSum=-0.022;SB=3.63 GT:AD:DP:GQ:PL 0/1:20,6:26:67:67,0,336 0/1:15,3:18:11:11,0,158 0/0:26,1:27:45:0,45,514 0/1:15,2:17:12:12,0,317 +chr8 144812376 . A G 56.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.433;DP=64;Dels=0.02;FS=2.465;HaplotypeScore=6.7722;MLEAC=2;MLEAF=0.250;MQ=24.52;MQ0=0;MQRankSum=0.144;QD=1.52;ReadPosRankSum=0.227;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,1:17:12:0,12,152 0/0:8,0:9:3:0,3,31 0/1:15,1:16:23:23,0,108 0/1:17,4:21:73:73,0,115 +chr8 144875029 . C G 49 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.559;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.0325;MLEAC=3;MLEAF=0.375;MQ=25.76;MQ0=0;MQRankSum=-0.898;QD=6.12;ReadPosRankSum=0.898;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:12:0,12,136 1/1:2,2:4:6:46,6,0 0/0:9,0:9:15:0,15,161 1/1:2,2:4:6:51,6,0 +chr8 144902918 . T A 1146.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.936;DP=306;Dels=0.00;FS=2.598;HaplotypeScore=3.5302;MLEAC=4;MLEAF=0.500;MQ=37.94;MQ0=0;MQRankSum=-6.769;QD=3.75;ReadPosRankSum=-0.511;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:50,16:66:99:381,0,1177 0/1:55,14:69:99:274,0,1209 0/1:79,7:86:55:55,0,1855 0/1:64,20:84:99:479,0,1568 +chr8 144919133 . A T 119.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.258;DP=93;Dels=0.01;FS=12.317;HaplotypeScore=6.2405;MLEAC=4;MLEAF=0.500;MQ=25.70;MQ0=0;MQRankSum=0.320;QD=1.29;ReadPosRankSum=-0.184;SB=-1.979e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:31:31,0,177 0/1:21,2:23:27:27,0,201 0/1:27,4:32:48:48,0,416 0/1:13,4:17:56:56,0,181 +chr8 144940730 . A G 193.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.166;DP=100;Dels=0.03;FS=17.890;HaplotypeScore=18.5019;MLEAC=3;MLEAF=0.375;MQ=23.03;MQ0=0;MQRankSum=0.817;QD=2.52;ReadPosRankSum=-2.462;SB=0.848 GT:AD:DP:GQ:PL 0/0:22,1:23:8:0,8,342 0/1:8,7:16:56:152,0,56 0/1:25,5:31:12:12,0,346 0/1:22,4:27:72:72,0,252 +chr8 144945191 rs12543389 T C 583.90 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.288;DB;DP=86;Dels=0.00;FS=1.170;HaplotypeScore=1.9336;MLEAC=3;MLEAF=0.375;MQ=22.62;MQ0=0;MQRankSum=4.770;QD=8.71;ReadPosRankSum=-2.534;SB=-1.159e+02 GT:AD:DP:GQ:PL 1/1:4,13:18:3:293,3,0 0/0:19,0:19:21:0,21,209 0/1:17,7:24:19:162,0,19 0/1:19,6:25:99:173,0,174 +chr8 144991975 . A G 114.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.280;DP=78;Dels=0.00;FS=20.044;HaplotypeScore=5.2851;MLEAC=3;MLEAF=0.375;MQ=26.93;MQ0=0;MQRankSum=-0.734;QD=1.88;ReadPosRankSum=-1.282;SB=-6.985e+00 GT:AD:DP:GQ:PL 0/1:22,4:26:33:33,0,301 0/0:16,1:17:15:0,15,141 0/1:18,4:22:77:77,0,305 0/1:10,3:13:48:48,0,134 +chr8 144993324 rs6984820 C T 891.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.590;DB;DP=180;Dels=0.03;FS=2.513;HaplotypeScore=4.8256;MLEAC=3;MLEAF=0.375;MQ=33.00;MQ0=0;MQRankSum=-1.639;QD=6.97;ReadPosRankSum=1.557;SB=-3.190e+02 GT:AD:DP:GQ:PL 0/1:33,11:44:99:298,0,663 0/0:50,1:51:99:0,111,1386 0/1:31,14:45:99:357,0,747 0/1:22,13:35:99:280,0,532 +chr8 145001588 rs11136334 C T 69.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.835;DB;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.8725;MLEAC=3;MLEAF=0.375;MQ=22.57;MQ0=0;MQRankSum=-0.293;QD=2.89;ReadPosRankSum=-0.023;SB=-2.800e+01 GT:AD:DP:GQ:PL 0/1:9,3:12:22:22,0,168 0/0:10,0:10:9:0,9,92 0/1:2,2:4:52:52,0,62 0/1:5,3:8:38:38,0,40 +chr8 145056962 . A C 585.58 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.044;DP=50;Dels=0.04;FS=0.000;HaplotypeScore=5.1738;MLEAC=6;MLEAF=0.750;MQ=22.62;MQ0=0;MQRankSum=2.708;QD=11.71;ReadPosRankSum=2.743;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,11:15:3:238,3,0 0/1:6,8:14:2:165,0,2 1/1:5,6:11:15:168,15,0 0/1:5,3:8:21:56,0,21 +chr8 145114454 . G A 173.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.136;DP=54;Dels=0.00;FS=5.481;HaplotypeScore=4.7239;MLEAC=3;MLEAF=0.375;MQ=21.19;MQ0=0;MQRankSum=0.651;QD=4.13;ReadPosRankSum=2.860;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,5:13:74:86,0,74 0/1:10,4:14:50:50,0,53 0/0:11,1:12:9:0,9,84 0/1:9,4:15:80:80,0,81 +chr8 145245944 rs10108542 A G 1185.20 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.183;DB;DP=40;Dels=0.00;FS=12.672;HaplotypeScore=0.7476;MLEAC=7;MLEAF=0.875;MQ=33.23;MQ0=0;MQRankSum=1.511;QD=29.63;ReadPosRankSum=-1.780;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,12:13:36:425,36,0 0/1:2,7:9:9:219,0,9 1/1:1,10:11:30:386,30,0 1/1:1,6:7:15:198,15,0 +chr8 145579994 . G A 30.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.728;DP=70;Dels=0.03;FS=14.371;HaplotypeScore=6.5423;MLEAC=3;MLEAF=0.375;MQ=26.97;MQ0=0;MQRankSum=0.064;QD=0.56;ReadPosRankSum=-0.166;SB=-4.008e-02 GT:AD:DP:GQ:PL 0/1:19,2:21:24:24,0,349 0/1:15,2:17:17:17,0,281 0/0:15,0:15:21:0,21,214 0/1:13,2:15:33:33,0,201 +chr8 145580190 . A G 84.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.381;DP=99;Dels=0.01;FS=44.902;HaplotypeScore=6.2920;MLEAC=3;MLEAF=0.375;MQ=31.50;MQ0=0;MQRankSum=-1.379;QD=1.24;ReadPosRankSum=-1.339;SB=-2.602e+00 GT:AD:DP:GQ:PL 0/1:24,6:30:99:111,0,599 0/1:21,2:23:4:4,0,517 0/0:28,2:30:11:0,11,701 0/1:13,1:15:9:9,0,245 +chr8 145640327 . A G 35.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.825;DP=69;Dels=0.03;FS=13.044;HaplotypeScore=11.0622;MLEAC=2;MLEAF=0.250;MQ=27.03;MQ0=0;MQRankSum=0.044;QD=1.05;ReadPosRankSum=-2.135;SB=-1.340e+00 GT:AD:DP:GQ:PL 0/0:14,1:15:3:0,3,335 0/0:18,1:19:39:0,39,389 0/1:16,2:18:28:28,0,354 0/1:12,3:15:48:48,0,179 +chr8 145665516 rs2306383 T C 2788.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.597;DB;DP=104;Dels=0.00;FS=2.357;HaplotypeScore=2.4375;MLEAC=8;MLEAF=1.00;MQ=29.39;MQ0=0;MQRankSum=1.941;QD=26.82;ReadPosRankSum=1.686;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:3,24:27:72:843,72,0 1/1:3,23:26:32:589,32,0 1/1:2,26:28:66:767,66,0 1/1:2,21:23:29:629,29,0 +chr8 145689366 . G C 75.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.220;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=1.9423;MLEAC=4;MLEAF=0.500;MQ=32.06;MQ0=0;MQRankSum=-0.140;QD=1.54;ReadPosRankSum=-2.262;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:49:49,0,189 0/1:13,1:14:5:5,0,278 0/1:13,2:15:41:41,0,257 0/1:7,1:8:22:22,0,89 +chr8 145730330 rs2101039 G A 4952.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.886;DB;DP=184;Dels=0.00;FS=1.907;HaplotypeScore=1.4443;MLEAC=7;MLEAF=0.875;MQ=31.01;MQ0=0;MQRankSum=-0.614;QD=26.91;ReadPosRankSum=1.161;SB=-1.360e+03 GT:AD:DP:GQ:PL 0/1:23,26:49:99:776,0,583 1/1:4,38:42:99:1225,108,0 1/1:4,48:52:99:1655,141,0 1/1:3,38:41:99:1296,111,0 +chr8 145737816 rs4251691 C T 705.82 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.975;DB;DP=35;Dels=0.00;FS=1.951;HaplotypeScore=1.8055;MLEAC=7;MLEAF=0.875;MQ=28.78;MQ0=0;MQRankSum=-0.225;QD=20.17;ReadPosRankSum=1.575;SB=-2.351e+02 GT:AD:DP:GQ:PL 0/1:5,6:11:99:182,0,142 1/1:0,4:4:12:128,12,0 1/1:3,10:13:24:280,24,0 1/1:2,5:7:15:160,15,0 +chr8 145741412 . A C 711.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.776;DP=167;Dels=0.00;FS=184.378;HaplotypeScore=2.8203;MLEAC=4;MLEAF=0.500;MQ=35.68;MQ0=0;MQRankSum=-4.776;QD=4.26;ReadPosRankSum=1.351;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,5:40:68:68,0,1151 0/1:33,10:43:99:212,0,1036 0/1:35,13:48:99:229,0,1099 0/1:25,11:36:99:245,0,622 +chr8 145741765 rs4244613 G A 1010.59 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.353;DB;DP=55;Dels=0.02;FS=1.941;HaplotypeScore=2.9987;MLEAC=7;MLEAF=0.875;MQ=28.14;MQ0=0;MQRankSum=-1.376;QD=18.37;ReadPosRankSum=2.400;SB=-3.598e+02 GT:AD:DP:GQ:PL 0/1:7,4:11:92:92,0,138 1/1:2,14:16:30:334,30,0 1/1:3,15:18:39:438,39,0 1/1:1,8:9:18:191,18,0 +chr8 145746497 . A T 108.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.847;DP=85;Dels=0.01;FS=42.767;HaplotypeScore=13.7194;MLEAC=4;MLEAF=0.500;MQ=26.87;MQ0=0;MQRankSum=-1.164;QD=1.28;ReadPosRankSum=1.374;SB=-1.794e-01 GT:AD:DP:GQ:PL 0/1:19,2:21:15:15,0,415 0/1:21,2:23:18:18,0,355 0/1:15,4:19:74:74,0,224 0/1:16,4:21:44:44,0,176 +chr8 145749369 . A C 125.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.988;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=8.2959;MLEAC=4;MLEAF=0.500;MQ=25.12;MQ0=0;MQRankSum=-0.599;QD=1.74;ReadPosRankSum=0.042;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:37:37,0,128 0/1:14,3:17:58:69,0,58 0/1:22,2:24:24:24,0,232 0/1:15,3:18:38:38,0,84 +chr8 146028922 . G C 109.05 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.491;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=7.4307;MLEAC=4;MLEAF=0.500;MQ=23.92;MQ0=0;MQRankSum=-0.310;QD=1.95;ReadPosRankSum=0.724;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,1:14:10:10,0,136 0/1:12,5:17:76:76,0,152 0/1:11,3:14:50:50,0,153 0/1:8,1:9:15:15,0,117 +chr9 421032 rs2297079 C G 5114.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=6.500;DB;DP=180;Dels=0.02;FS=105.392;HaplotypeScore=14.7261;MLEAC=6;MLEAF=0.750;MQ=33.47;MQ0=0;MQRankSum=5.341;QD=28.41;ReadPosRankSum=-1.556;SB=-3.090e+02 GT:AD:DP:GQ:PL 0/1:5,32:37:17:1058,0,17 1/1:6,39:45:57:1378,57,0 1/1:5,40:45:99:1450,117,0 0/1:10,39:49:21:1228,0,21 +chr9 432153 . T G 36.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.764;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=10.9396;MLEAC=3;MLEAF=0.375;MQ=20.96;MQ0=0;MQRankSum=1.036;QD=0.93;ReadPosRankSum=0.756;SB=-5.576e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:45:50,0,45 0/1:13,1:14:11:11,0,66 0/1:11,2:13:16:16,0,48 0/0:5,0:5:3:0,3,27 +chr9 463717 . T C 53.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.370;DP=80;Dels=0.03;FS=0.000;HaplotypeScore=9.0747;MLEAC=2;MLEAF=0.250;MQ=31.52;MQ0=0;MQRankSum=-0.028;QD=1.49;ReadPosRankSum=0.598;SB=0.102 GT:AD:DP:GQ:PL 0/0:18,0:18:21:0,21,229 0/1:15,2:17:40:40,0,175 0/0:25,0:25:18:0,18,217 0/1:16,2:18:55:55,0,95 +chr9 659979 rs62530109 C G 78.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.403;DB;DP=34;Dels=0.00;FS=2.518;HaplotypeScore=1.5167;MLEAC=2;MLEAF=0.250;MQ=28.75;MQ0=0;MQRankSum=0.618;QD=4.92;ReadPosRankSum=1.370;SB=0.033 GT:AD:DP:GQ:PL 0/1:6,3:9:98:98,0,151 0/0:10,0:10:18:0,18,211 0/0:8,0:8:15:0,15,198 0/1:5,2:7:22:22,0,69 +chr9 712060 rs4465020 G C 1989.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.217;DB;DP=165;Dels=0.01;FS=0.601;HaplotypeScore=5.7018;MLEAC=4;MLEAF=0.500;MQ=36.77;MQ0=0;MQRankSum=1.362;QD=17.45;ReadPosRankSum=2.557;SB=-9.800e+02 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,144,1890 1/1:1,30:31:67:1126,67,0 0/1:27,13:40:99:409,0,811 0/1:26,16:42:99:503,0,817 +chr9 2101545 rs10738570 T A 596.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.795;DB;DP=66;Dels=0.05;FS=0.000;HaplotypeScore=4.6782;MLEAC=4;MLEAF=0.500;MQ=27.24;MQ0=0;MQRankSum=-2.355;QD=11.93;ReadPosRankSum=-0.518;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,14:15:36:367,36,0 0/0:16,0:16:42:0,42,498 0/1:17,8:25:99:186,0,394 0/1:4,3:7:20:92,0,20 +chr9 2182053 . G T 49.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.221;DP=90;Dels=0.04;FS=0.000;HaplotypeScore=11.2494;MLEAC=3;MLEAF=0.375;MQ=30.32;MQ0=0;MQRankSum=0.279;QD=0.82;ReadPosRankSum=-0.236;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,1:22:11:11,0,212 0/1:18,2:20:65:65,0,154 0/0:29,0:29:21:0,21,233 0/1:14,1:15:16:16,0,125 +chr9 2718651 rs139505822 C A 264.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.779;DB;DP=58;Dels=0.03;FS=10.794;HaplotypeScore=4.2074;MLEAC=4;MLEAF=0.500;MQ=32.91;MQ0=0;MQRankSum=-3.712;QD=4.56;ReadPosRankSum=2.137;SB=-1.186e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:99:108,0,183 0/1:14,3:17:49:49,0,372 0/1:11,4:15:87:87,0,215 0/1:9,3:12:63:63,0,168 +chr9 2729792 rs183191721 T A 402.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.429;DB;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7456;MLEAC=1;MLEAF=0.125;MQ=35.09;MQ0=0;MQRankSum=-2.456;QD=12.21;ReadPosRankSum=0.967;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,15:33:99:439,0,446 0/0:41,0:41:99:0,120,1517 0/0:36,0:36:99:0,105,1281 0/0:13,0:13:30:0,30,355 +chr9 2875963 . C A 567.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.227;DP=125;Dels=0.00;FS=106.402;HaplotypeScore=1.1160;MLEAC=4;MLEAF=0.500;MQ=28.53;MQ0=0;MQRankSum=1.832;QD=4.54;ReadPosRankSum=0.840;SB=-2.391e-01 GT:AD:DP:GQ:PL 0/1:27,3:30:68:68,0,325 0/1:23,9:32:99:152,0,333 0/1:21,9:30:99:178,0,201 0/1:25,8:33:99:212,0,170 +chr9 2876109 rs4013819 C G 408.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.751;DB;DP=149;Dels=0.01;FS=1.519;HaplotypeScore=3.1907;MLEAC=3;MLEAF=0.375;MQ=21.40;MQ0=0;MQRankSum=-0.017;QD=3.89;ReadPosRankSum=0.060;SB=-1.860e+02 GT:AD:DP:GQ:PL 0/1:28,13:41:99:179,0,257 0/0:44,0:44:75:0,75,744 0/1:20,16:36:99:176,0,257 0/1:17,10:27:97:97,0,240 +chr9 2943518 rs34443524 A ACT 1000.52 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.402;DB;DP=77;FS=2.995;HaplotypeScore=14.7870;MLEAC=4;MLEAF=0.500;MQ=26.92;MQ0=0;MQRankSum=-1.907;QD=17.55;RPA=1,2;RU=CT;ReadPosRankSum=1.417;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:4,17:18:48:851,48,0 0/0:20,0:15:42:0,42,705 0/1:10,7:11:99:122,0,322 0/1:13,3:12:85:85,0,410 +chr9 3225160 . A G 38.44 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.195;DP=64;Dels=0.02;FS=15.843;HaplotypeScore=14.8575;MLEAC=2;MLEAF=0.250;MQ=28.93;MQ0=0;MQRankSum=0.293;QD=1.48;ReadPosRankSum=-0.609;SB=-5.753e-01 GT:AD:DP:GQ:PL 0/1:10,1:11:6:6,0,175 0/1:11,3:14:71:71,0,93 0/0:22,0:22:21:0,21,213 0/0:15,0:16:12:0,12,132 +chr9 3829631 rs2181578 C T 248.70 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.166;DB;DP=10;Dels=0.00;FS=20.792;HaplotypeScore=0.3856;MLEAC=6;MLEAF=1.00;MQ=32.73;MQ0=0;MQRankSum=2.166;QD=24.87;ReadPosRankSum=-0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,2:4:6:85,6,0 1/1:1,4:5:12:166,12,0 1/1:0,1:1:3:34,3,0 +chr9 4117713 rs927315 C T 326.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.656;DB;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=0.9952;MLEAC=1;MLEAF=0.125;MQ=38.37;MQ0=0;MQRankSum=-1.468;QD=7.60;ReadPosRankSum=0.794;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,147,1946 0/1:30,13:43:99:363,0,1069 0/0:58,0:58:99:0,171,2227 0/0:40,0:40:99:0,111,1424 +chr9 6589361 . C G 53.03 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.405;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=7.2032;MLEAC=2;MLEAF=0.333;MQ=17.60;MQ0=0;MQRankSum=1.732;QD=2.21;ReadPosRankSum=-1.511;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,2:6:3:0,3,37 0/1:10,2:12:32:45,0,32 0/1:8,2:11:36:45,0,36 ./. +chr9 8376030 . C G 178.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.813;DP=106;Dels=0.00;FS=33.926;HaplotypeScore=12.1110;MLEAC=4;MLEAF=0.500;MQ=26.70;MQ0=0;MQRankSum=0.416;QD=1.69;ReadPosRankSum=2.201;SB=-2.012e+00 GT:AD:DP:GQ:PL 0/1:22,3:25:59:59,0,295 0/1:28,5:34:83:83,0,530 0/1:24,4:28:61:61,0,386 0/1:18,1:19:18:18,0,95 +chr9 11012023 . C A 103.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.680;DP=21;Dels=0.00;FS=6.117;HaplotypeScore=0.2892;MLEAC=3;MLEAF=0.375;MQ=26.55;MQ0=0;MQRankSum=1.133;QD=5.47;ReadPosRankSum=-1.359;SB=-2.062e+00 GT:AD:DP:GQ:PL 0/1:4,2:6:20:61,0,20 0/0:2,0:2:3:0,3,40 0/1:6,1:7:30:30,0,63 0/1:4,2:6:54:54,0,74 +chr9 11256710 . T C 36.17 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.209;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.5383;MLEAC=4;MLEAF=0.667;MQ=15.62;MQ0=0;MQRankSum=2.642;QD=1.90;ReadPosRankSum=-1.388;SB=17.86 GT:AD:DP:GQ:PL 1/1:6,3:9:6:47,6,0 0/0:8,0:8:3:0,3,23 1/1:8,1:10:3:28,3,0 ./. +chr9 11256719 . T G 110.03 . AC=7;AF=0.875;AN=8;BaseQRankSum=-2.207;DP=44;Dels=0.00;FS=8.435;HaplotypeScore=4.6066;MLEAC=7;MLEAF=0.875;MQ=18.55;MQ0=0;MQRankSum=3.383;QD=2.50;ReadPosRankSum=1.128;SB=3.50 GT:AD:DP:GQ:PL 0/1:10,2:12:55:57,0,55 1/1:8,2:10:3:26,3,0 1/1:10,2:12:3:29,3,0 1/1:9,1:10:3:38,3,0 +chr9 13126470 rs10738323 C G 256.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.250;DB;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=42.18;MQ0=0;MQRankSum=-1.150;QD=10.70;ReadPosRankSum=-1.083;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:99:102,0,145 0/1:11,6:17:99:196,0,401 0/0:12,0:12:36:0,36,490 0/0:3,0:3:9:0,9,133 +chr9 13157999 . G C 56.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.882;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=2.6742;MLEAC=1;MLEAF=0.125;MQ=39.30;MQ0=0;MQRankSum=-0.084;QD=1.97;ReadPosRankSum=1.511;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:61,1:64:99:0,125,1860 0/0:52,3:55:26:0,26,1476 0/0:61,2:63:97:0,97,1818 0/1:24,5:29:93:93,0,542 +chr9 13162812 . C T 280.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.795;DP=172;Dels=0.02;FS=2.265;HaplotypeScore=8.4329;MLEAC=4;MLEAF=0.500;MQ=33.11;MQ0=0;MQRankSum=-4.615;QD=1.63;ReadPosRankSum=1.466;SB=-1.259e-02 GT:AD:DP:GQ:PL 0/1:43,12:55:99:175,0,1171 0/1:39,4:43:34:34,0,911 0/1:53,8:61:99:104,0,1071 0/1:8,2:10:9:9,0,124 +chr9 14784492 rs121912610 C T 93.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.735;DB;DP=296;Dels=0.00;FS=123.476;HaplotypeScore=5.6674;MLEAC=3;MLEAF=0.375;MQ=36.00;MQ0=0;MQRankSum=-3.650;QD=0.43;ReadPosRankSum=1.827;SB=0.771 GT:AD:DP:GQ:PL 0/1:66,7:73:39:39,0,1882 0/1:72,10:82:29:29,0,2065 0/0:73,6:80:49:0,49,2046 0/1:54,6:61:69:69,0,1312 +chr9 14792790 . ATCT A 3389 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.487;DP=172;FS=0.000;HaplotypeScore=44.9178;MLEAC=3;MLEAF=0.375;MQ=34.23;MQ0=0;MQRankSum=0.317;QD=28.97;RPA=2,1;RU=TCT;ReadPosRankSum=1.844;SB=-1.234e+03;STR GT:AD:DP:GQ:PL 0/0:53,0:51:99:0,135,2525 0/1:21,25:46:99:1444,0,664 0/1:25,25:48:99:1335,0,917 0/1:7,11:16:99:610,0,190 +chr9 14819503 . C G 114.36 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.044;DP=59;Dels=0.02;FS=2.677;HaplotypeScore=9.8591;MLEAC=3;MLEAF=0.375;MQ=24.55;MQ0=0;MQRankSum=-1.146;QD=2.33;ReadPosRankSum=3.672;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:11:11,0,97 0/1:11,4:15:58:58,0,126 0/1:13,4:18:88:88,0,102 0/0:9,0:10:18:0,18,195 +chr9 14848915 rs1021494 T A 555.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.777;DB;DP=37;Dels=0.00;FS=10.579;HaplotypeScore=0.9331;MLEAC=5;MLEAF=0.625;MQ=32.23;MQ0=0;MQRankSum=-1.509;QD=15.02;ReadPosRankSum=1.570;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:33:392,33,0 0/1:4,2:6:51:51,0,115 0/1:6,3:9:85:85,0,193 0/1:7,4:11:73:73,0,171 +chr9 15035960 rs7856832 T C 102 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.106;DB;DP=47;Dels=0.00;FS=2.469;HaplotypeScore=1.3935;MLEAC=1;MLEAF=0.125;MQ=36.96;MQ0=0;MQRankSum=-0.812;QD=9.27;ReadPosRankSum=-0.141;SB=5.329e-03 GT:AD:DP:GQ:PL 0/0:9,0:9:24:0,24,298 0/1:7,4:11:99:138,0,139 0/0:17,1:18:45:0,45,568 0/0:9,0:9:24:0,24,296 +chr9 15191109 . G T 126.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.643;DP=53;Dels=0.02;FS=2.457;HaplotypeScore=1.1111;MLEAC=4;MLEAF=0.500;MQ=34.48;MQ0=0;MQRankSum=-1.875;QD=2.39;ReadPosRankSum=2.791;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,3:17:74:74,0,252 0/1:13,2:15:5:5,0,281 0/1:12,4:16:72:72,0,375 0/1:3,1:4:17:17,0,58 +chr9 15361770 rs581994 A G 90.05 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.437;DB;DP=186;Dels=0.00;FS=21.269;HaplotypeScore=2.5474;MLEAC=1;MLEAF=0.125;MQ=12.80;MQ0=0;MQRankSum=1.885;QD=1.77;ReadPosRankSum=1.766;SB=0.203 GT:AD:DP:GQ:PL 0/1:38,13:51:99:126,0,164 0/0:61,0:61:27:0,27,293 0/0:53,0:53:18:0,18,188 0/0:21,0:21:15:0,15,145 +chr9 15447361 rs34278677 A AACT 2282.12 . AC=8;AF=1.00;AN=8;BaseQRankSum=-1.655;DB;DP=90;FS=0.000;HaplotypeScore=18.6915;MLEAC=8;MLEAF=1.00;MQ=28.91;MQ0=0;MQRankSum=-0.423;QD=25.36;RPA=1,2;RU=ACT;ReadPosRankSum=-0.346;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:17,15:33:54:986,54,0 1/1:21,11:31:17:904,17,0 1/1:8,3:10:12:223,12,0 1/1:6,3:6:12:217,12,0 +chr9 15777865 rs72706698 T A 759.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.158;DB;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6721;MLEAC=3;MLEAF=0.375;MQ=34.89;MQ0=0;MQRankSum=-2.367;QD=11.34;ReadPosRankSum=1.213;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:25,0:25:66:0,66,858 0/1:17,10:27:99:272,0,440 0/1:14,8:22:99:209,0,372 0/1:8,10:18:99:322,0,145 +chr9 18718186 rs1821376 A G 154.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.327;DB;DP=360;Dels=0.00;FS=5.147;HaplotypeScore=1.7050;MLEAC=2;MLEAF=0.250;MQ=13.61;MQ0=0;MQRankSum=-1.395;QD=0.82;ReadPosRankSum=0.049;SB=-5.379e+01 GT:AD:DP:GQ:PL 0/1:69,29:98:99:148,0,292 0/1:63,27:90:48:48,0,267 0/0:126,0:126:78:0,78,877 0/0:46,0:46:24:0,24,247 +chr9 18776936 . G C 32.74 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.105;DP=70;Dels=0.01;FS=19.490;HaplotypeScore=5.1954;MLEAC=3;MLEAF=0.375;MQ=27.50;MQ0=0;MQRankSum=1.590;QD=0.53;ReadPosRankSum=-0.845;SB=3.54 GT:AD:DP:GQ:PL 0/0:8,0:8:12:0,12,147 0/1:16,1:17:10:10,0,217 0/1:21,3:24:42:42,0,388 0/1:18,2:20:23:23,0,319 +chr9 18928478 . G A 253.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.087;DP=107;Dels=0.00;FS=157.498;HaplotypeScore=7.0951;MLEAC=3;MLEAF=0.375;MQ=34.49;MQ0=0;MQRankSum=-1.824;QD=2.99;ReadPosRankSum=1.953;SB=-7.501e-01 GT:AD:DP:GQ:PL 0/0:21,1:22:19:0,19,570 0/1:19,7:26:91:91,0,466 0/1:21,7:28:83:83,0,614 0/1:25,6:31:99:123,0,591 +chr9 19027571 rs13298563 C A 90.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.617;DB;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.9762;MLEAC=1;MLEAF=0.125;MQ=29.29;MQ0=0;MQRankSum=-1.393;QD=5.06;ReadPosRankSum=-0.672;SB=-5.899e+01 GT:AD:DP:GQ:PL 0/1:10,8:18:99:127,0,163 0/0:23,0:23:54:0,54,662 0/0:33,0:33:69:0,69,854 0/0:21,0:21:45:0,45,499 +chr9 19063108 rs13302748 T C 297.81 . AC=5;AF=0.833;AN=6;BaseQRankSum=-0.351;DB;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.3298;MLEAC=5;MLEAF=0.833;MQ=24.26;MQ0=0;MQRankSum=-1.335;QD=14.18;ReadPosRankSum=1.054;SB=-2.397e+01 GT:AD:DP:GQ:PL 0/1:3,3:6:21:21,0,62 1/1:1,9:10:21:219,21,0 1/1:1,4:5:9:99,9,0 ./. +chr9 19119554 . G A 39.40 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.167;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=8.4734;MLEAC=3;MLEAF=0.500;MQ=20.33;MQ0=0;MQRankSum=-1.167;QD=0.72;ReadPosRankSum=1.633;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:32:32,0,123 0/1:15,2:19:31:31,0,76 0/1:13,2:18:15:15,0,51 ./. +chr9 19119768 . T G 326.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.727;DP=171;Dels=0.05;FS=58.675;HaplotypeScore=70.3868;MLEAC=4;MLEAF=0.500;MQ=21.78;MQ0=0;MQRankSum=0.083;QD=1.91;ReadPosRankSum=1.192;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,13:48:99:143,0,359 0/1:41,6:49:59:59,0,379 0/1:33,6:39:79:79,0,291 0/1:22,5:27:88:88,0,96 +chr9 20622169 . G A 65.74 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.919;DP=25;Dels=0.04;FS=2.808;HaplotypeScore=7.0937;MLEAC=5;MLEAF=0.625;MQ=19.86;MQ0=0;MQRankSum=2.266;QD=2.63;ReadPosRankSum=-1.041;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,1:3:18:18,0,23 0/1:4,1:6:17:17,0,19 1/1:7,1:8:3:32,3,0 0/1:5,2:7:41:41,0,62 +chr9 20821218 rs13283718 G T 33.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.727;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=18.97;MQ0=0;MQRankSum=0.727;QD=8.25;ReadPosRankSum=-0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:34,3,0 ./. 1/1:1,2:3:3:32,3,0 ./. +chr9 20976298 rs10119918 C T 811.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.769;DB;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.6641;MLEAC=4;MLEAF=0.500;MQ=34.89;MQ0=0;MQRankSum=0.809;QD=19.32;ReadPosRankSum=-1.332;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,15:18:45:560,45,0 0/0:15,0:15:42:0,42,512 0/1:9,6:15:99:200,0,239 0/1:6,3:9:99:100,0,102 +chr9 21007124 . A C 88.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.035;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.9625;MLEAC=3;MLEAF=0.375;MQ=35.02;MQ0=0;MQRankSum=-3.134;QD=0.95;ReadPosRankSum=-0.967;SB=0.310 GT:AD:DP:GQ:PL 0/1:33,3:36:6:6,0,763 0/1:32,5:37:43:43,0,968 0/0:37,3:41:11:0,11,1064 0/1:16,4:20:81:81,0,266 +chr9 21968159 rs3088440 G A 143.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.723;DB;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.4769;MLEAC=1;MLEAF=0.125;MQ=35.55;MQ0=0;MQRankSum=1.593;QD=7.20;ReadPosRankSum=0.493;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:14,6:20:99:180,0,421 0/0:26,0:26:75:0,75,923 0/0:27,0:27:75:0,75,940 0/0:19,0:19:45:0,45,543 +chr9 25498728 rs2183898 T C 118.70 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.825;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=26.12;MQ0=0;MQRankSum=1.186;QD=10.79;ReadPosRankSum=1.749;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:9:101,9,0 1/1:2,1:3:3:26,3,0 0/1:3,1:4:31:31,0,63 ./. +chr9 27203166 . A C 46.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.113;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7044;MLEAC=3;MLEAF=0.375;MQ=38.06;MQ0=0;MQRankSum=-0.930;QD=0.76;ReadPosRankSum=1.662;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,2:19:13:13,0,462 0/1:20,3:24:71:71,0,311 0/1:17,1:18:2:2,0,185 0/0:15,0:15:18:0,18,198 +chr9 27218726 rs667250 C T 2464.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.688;DB;DP=91;Dels=0.02;FS=15.966;HaplotypeScore=5.1571;MLEAC=8;MLEAF=1.00;MQ=30.18;MQ0=0;MQRankSum=1.688;QD=27.09;ReadPosRankSum=1.557;SB=-4.401e+01 GT:AD:DP:GQ:PL 1/1:3,22:25:66:770,66,0 1/1:1,22:23:57:693,57,0 1/1:3,24:27:60:704,60,0 1/1:4,10:14:30:337,30,0 +chr9 27289832 rs1980660 G T 409.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.441;DB;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.2207;MLEAC=4;MLEAF=0.500;MQ=33.03;MQ0=0;MQRankSum=-0.335;QD=7.58;ReadPosRankSum=-0.335;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:12,4:16:99:118,0,321 0/1:13,6:19:99:183,0,280 0/1:8,4:12:99:99,0,213 0/1:5,2:7:52:52,0,83 +chr9 27353460 rs1888380 A G 37.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=10;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=14.62;MQ0=0;MQRankSum=1.026;QD=7.40;ReadPosRankSum=-1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:31,3,0 ./. 1/1:2,1:4:3:39,3,0 ./. +chr9 27467670 rs10757663 G A 52.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=26.41;MQ0=0;MQRankSum=0.736;QD=13.00;ReadPosRankSum=0.736;SB=-3.900e+01 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:2:3:43,3,0 1/1:1,1:2:3:42,3,0 +chr9 27561612 . A G 300.43 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.074;DP=50;Dels=0.00;FS=13.278;HaplotypeScore=4.9312;MLEAC=5;MLEAF=0.625;MQ=28.98;MQ0=0;MQRankSum=1.488;QD=6.01;ReadPosRankSum=-0.854;SB=-1.139e+00 GT:AD:DP:GQ:PL 0/1:11,4:15:19:108,0,19 0/1:14,1:15:17:17,0,140 0/1:11,5:18:99:145,0,114 1/1:0,2:2:6:74,6,0 +chr9 30689609 . A G 49.13 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.473;DP=264;Dels=0.01;FS=0.000;HaplotypeScore=0.7446;MLEAC=2;MLEAF=0.250;MQ=10.50;MQ0=0;MQRankSum=3.125;QD=0.40;ReadPosRankSum=1.921;SB=-3.187e+01 GT:AD:DP:GQ:PL 0/1:56,1:57:19:19,0,119 0/0:61,0:61:9:0,9,93 0/0:77,0:77:18:0,18,187 0/1:63,3:67:71:71,0,88 +chr9 30690117 rs113259609 C G 63.26 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.570;DB;DP=86;Dels=0.01;FS=9.408;HaplotypeScore=0.7373;MLEAC=4;MLEAF=0.500;MQ=11.28;MQ0=0;MQRankSum=1.039;QD=1.05;ReadPosRankSum=2.571;SB=-3.502e+01 GT:AD:DP:GQ:PL 0/1:20,4:24:20:46,0,20 1/1:15,1:16:3:24,3,0 0/0:24,1:25:6:0,6,63 0/1:18,2:20:36:36,0,103 +chr9 31254116 rs61735460 G T 96.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.396;DB;DP=134;Dels=0.00;FS=1.554;HaplotypeScore=1.2217;MLEAC=1;MLEAF=0.125;MQ=22.23;MQ0=0;MQRankSum=0.841;QD=3.46;ReadPosRankSum=0.932;SB=-6.597e+01 GT:AD:DP:GQ:PL 0/1:21,7:28:99:133,0,127 0/0:41,0:41:45:0,45,551 0/0:39,0:39:54:0,54,643 0/0:26,0:26:27:0,27,282 +chr9 32418237 rs2026739 G T 811.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.128;DB;DP=66;Dels=0.00;FS=4.150;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=37.70;MQ0=0;MQRankSum=-0.061;QD=12.30;ReadPosRankSum=1.490;SB=-3.703e+01 GT:AD:DP:GQ:PL 1/1:1,15:16:45:594,45,0 0/1:20,5:25:99:125,0,720 0/1:19,3:22:69:69,0,590 0/1:1,2:3:21:69,0,21 +chr9 32473014 . G T 108.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.593;DP=78;Dels=0.03;FS=64.741;HaplotypeScore=3.1784;MLEAC=3;MLEAF=0.375;MQ=31.91;MQ0=0;MQRankSum=-2.223;QD=1.49;ReadPosRankSum=1.091;SB=-1.219e+00 GT:AD:DP:GQ:PL 0/1:20,5:25:95:95,0,404 0/1:19,3:22:51:51,0,394 0/1:21,4:25:3:3,0,488 0/0:3,0:4:9:0,9,128 +chr9 32946852 rs2183868 G C 665.41 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.328;DB;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7508;MLEAC=8;MLEAF=1.00;MQ=15.00;MQ0=0;MQRankSum=1.392;QD=5.99;ReadPosRankSum=2.362;SB=-3.245e+02 GT:AD:DP:GQ:PL 1/1:3,24:27:15:174,15,0 1/1:5,22:27:12:130,12,0 1/1:1,28:29:6:48,6,0 1/1:2,26:28:33:352,33,0 +chr9 33001673 . C A 408.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.428;DP=44;Dels=0.00;FS=3.424;HaplotypeScore=1.9520;MLEAC=4;MLEAF=0.500;MQ=27.31;MQ0=0;MQRankSum=1.284;QD=12.77;ReadPosRankSum=2.657;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,6:12:2:165,0,2 1/1:3,6:9:15:130,15,0 0/0:12,0:12:12:0,12,116 0/1:5,6:11:26:160,0,26 +chr9 33026572 rs20583 T C 105.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.158;DB;DP=143;Dels=0.01;FS=1.785;HaplotypeScore=1.9064;MLEAC=3;MLEAF=0.375;MQ=23.76;MQ0=0;MQRankSum=-3.006;QD=0.82;ReadPosRankSum=0.515;SB=-8.844e+01 GT:AD:DP:GQ:PL 0/1:35,8:43:99:104,0,533 0/1:33,9:42:6:6,0,646 0/1:35,9:44:37:37,0,395 0/0:12,1:13:9:0,9,110 +chr9 33245245 . T A 99.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.869;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.2892;MLEAC=2;MLEAF=0.250;MQ=33.98;MQ0=0;MQRankSum=-1.532;QD=2.43;ReadPosRankSum=0.803;SB=0.557 GT:AD:DP:GQ:PL 0/1:18,5:23:99:114,0,554 0/0:9,1:10:2:0,2,269 0/0:16,1:17:7:0,7,453 0/1:16,2:18:25:25,0,419 +chr9 33246660 . C T 359.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-7.053;DP=198;Dels=0.01;FS=235.120;HaplotypeScore=9.8262;MLEAC=3;MLEAF=0.375;MQ=33.15;MQ0=0;MQRankSum=-6.661;QD=2.52;ReadPosRankSum=1.695;SB=-2.292e+00 GT:AD:DP:GQ:PL 0/1:31,9:40:99:118,0,860 0/0:47,6:53:18:0,18,1306 0/1:42,12:54:99:130,0,1149 0/1:37,12:49:99:155,0,950 +chr9 33255361 . C A 53.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.297;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2962;MLEAC=3;MLEAF=0.375;MQ=29.35;MQ0=0;MQRankSum=-0.071;QD=0.79;ReadPosRankSum=2.364;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,2:20:27:27,0,205 0/1:18,4:22:65:65,0,121 0/1:23,2:25:1:1,0,205 0/0:21,0:21:21:0,21,185 +chr9 33264540 rs1071545 C G 52.22 . AC=4;AF=1.00;AN=4;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=23.08;MQ0=0;QD=13.05;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:2:3:41,3,0 1/1:0,2:2:6:45,6,0 +chr9 33342841 . G A 35.70 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.893;DP=75;Dels=0.01;FS=5.018;HaplotypeScore=1.9024;MLEAC=2;MLEAF=0.250;MQ=35.50;MQ0=0;MQRankSum=-1.825;QD=0.94;ReadPosRankSum=0.350;SB=2.90 GT:AD:DP:GQ:PL 0/1:17,2:19:22:22,0,167 0/1:16,3:19:55:55,0,258 0/0:23,0:23:33:0,33,371 0/0:12,0:13:18:0,18,200 +chr9 33384914 . A G 38.09 . AC=3;AF=0.750;AN=4;BaseQRankSum=-0.750;DP=95;Dels=0.00;FS=2.303;HaplotypeScore=3.3782;MLEAC=3;MLEAF=0.750;MQ=9.43;MQ0=0;MQRankSum=3.385;QD=0.79;ReadPosRankSum=-2.177;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:23,3:26:16:16,0,38 ./. 1/1:18,4:22:6:58,6,0 +chr9 33442114 . A C 243 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.820;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=3.3633;MLEAC=1;MLEAF=0.125;MQ=33.58;MQ0=0;MQRankSum=-1.383;QD=5.79;ReadPosRankSum=2.680;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/0:25,1:26:24:0,24,598 0/0:36,2:38:28:0,28,1009 0/0:39,0:39:84:0,84,1065 0/1:28,13:41:99:279,0,457 +chr9 33465862 . G T 70.38 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.175;DP=87;Dels=0.00;FS=8.502;HaplotypeScore=3.5224;MLEAC=2;MLEAF=0.250;MQ=31.52;MQ0=0;MQRankSum=-1.454;QD=1.72;ReadPosRankSum=-0.179;SB=-7.595e+00 GT:AD:DP:GQ:PL 0/1:21,1:22:6:6,0,194 0/0:20,0:20:18:0,18,185 0/0:25,0:26:21:0,21,257 0/1:15,4:19:66:103,0,66 +chr9 33571946 rs7037035 C T 219.55 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.749;DB;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7348;MLEAC=6;MLEAF=0.750;MQ=17.73;MQ0=0;MQRankSum=1.833;QD=6.46;ReadPosRankSum=2.961;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,5:13:12:111,12,0 0/1:7,4:11:15:72,0,15 0/1:3,4:7:15:52,0,15 1/1:1,2:3:3:28,3,0 +chr9 33798414 . C T 350.68 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.852;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.2290;MLEAC=5;MLEAF=0.625;MQ=13.51;MQ0=0;MQRankSum=5.017;QD=2.10;ReadPosRankSum=0.608;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,2:37:61:61,0,86 0/1:40,5:45:44:122,0,44 0/1:44,3:47:14:99,0,14 1/1:35,3:38:9:113,9,0 +chr9 33798831 rs34533798 GC G 206.73 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.666;DB;DP=22;FS=0.000;HaplotypeScore=25.5939;MLEAC=5;MLEAF=0.625;MQ=15.07;MQ0=0;MQRankSum=-0.762;QD=12.16;RPA=5,4;RU=C;ReadPosRankSum=1.179;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:1,4:4:12:154,12,0 0/1:2,4:4:28:68,0,28 0/0:2,3:1:3:0,3,37 1/1:3,3:1:3:38,3,0 +chr9 33941712 . C T 74.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.081;DP=151;Dels=0.00;FS=23.016;HaplotypeScore=1.9434;MLEAC=1;MLEAF=0.125;MQ=39.42;MQ0=0;MQRankSum=-2.151;QD=3.00;ReadPosRankSum=-0.176;SB=-4.997e+00 GT:AD:DP:GQ:PL 0/0:39,2:41:48:0,48,1210 0/0:43,0:43:99:0,114,1452 0/0:42,0:42:99:0,99,1165 0/1:20,5:25:99:111,0,505 +chr9 34256006 . G T 123.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.260;DP=189;Dels=0.01;FS=130.612;HaplotypeScore=22.0485;MLEAC=3;MLEAF=0.375;MQ=28.11;MQ0=0;MQRankSum=-2.100;QD=0.90;ReadPosRankSum=2.440;SB=0.772 GT:AD:DP:GQ:PL 0/0:49,3:52:38:0,38,1090 0/1:40,5:45:30:30,0,730 0/1:39,8:47:97:97,0,802 0/1:35,8:44:40:40,0,908 +chr9 34256347 rs10814083 C T 987.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.303;DB;DP=93;Dels=0.00;FS=14.444;HaplotypeScore=2.6944;MLEAC=4;MLEAF=0.500;MQ=35.89;MQ0=0;MQRankSum=-3.581;QD=10.62;ReadPosRankSum=0.441;SB=-4.228e+02 GT:AD:DP:GQ:PL 0/1:16,5:21:99:143,0,518 0/1:16,6:23:99:152,0,378 0/1:12,18:30:99:577,0,252 0/1:13,6:19:99:158,0,342 +chr9 34319225 . T C 40.74 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.013;DP=113;Dels=0.04;FS=0.000;HaplotypeScore=3.9986;MLEAC=3;MLEAF=0.375;MQ=22.25;MQ0=0;MQRankSum=2.513;QD=0.47;ReadPosRankSum=0.417;SB=0.435 GT:AD:DP:GQ:PL 0/0:25,0:25:9:0,9,116 0/1:24,1:25:30:30,0,53 0/1:34,1:35:3:3,0,271 0/1:22,2:24:48:48,0,71 +chr9 34401180 . T G 101.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.463;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.9583;MLEAC=1;MLEAF=0.125;MQ=34.33;MQ0=0;MQRankSum=-2.540;QD=4.81;ReadPosRankSum=-2.147;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:30:0,30,362 0/0:13,0:13:18:0,18,200 0/0:21,0:21:45:0,45,565 0/1:15,6:21:99:137,0,234 +chr9 34583096 . T C 89.32 . AC=3;AF=0.500;AN=6;BaseQRankSum=-2.130;DP=17;Dels=0.00;FS=5.119;HaplotypeScore=2.3553;MLEAC=3;MLEAF=0.500;MQ=20.23;MQ0=0;MQRankSum=0.968;QD=5.95;ReadPosRankSum=-0.452;SB=-1.264e+00 GT:AD:DP:GQ:PL 0/1:3,3:6:23:67,0,23 0/1:4,2:6:25:40,0,25 0/1:2,1:3:21:21,0,29 ./. +chr9 34656946 . T A 53.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.691;DP=155;Dels=0.01;FS=9.013;HaplotypeScore=2.4402;MLEAC=3;MLEAF=0.375;MQ=34.24;MQ0=0;MQRankSum=-3.984;QD=0.49;ReadPosRankSum=1.664;SB=-1.107e+00 GT:AD:DP:GQ:PL 0/1:37,4:41:26:26,0,888 0/1:32,5:37:63:63,0,882 0/0:43,3:46:27:0,27,1237 0/1:28,2:30:6:6,0,645 +chr9 35045347 . G A 49.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.139;DP=190;Dels=0.04;FS=77.536;HaplotypeScore=48.6119;MLEAC=4;MLEAF=0.500;MQ=24.00;MQ0=0;MQRankSum=-2.117;QD=0.26;ReadPosRankSum=3.654;SB=-3.051e-01 GT:AD:DP:GQ:PL 0/1:40,5:45:16:16,0,742 0/1:48,5:54:14:14,0,586 0/1:36,7:44:44:44,0,377 0/1:35,4:40:18:18,0,351 +chr9 35068171 . A T 187.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.298;DP=323;Dels=0.00;FS=16.964;HaplotypeScore=23.2268;MLEAC=3;MLEAF=0.375;MQ=33.88;MQ0=0;MQRankSum=-5.099;QD=0.78;ReadPosRankSum=3.688;SB=0.147 GT:AD:DP:GQ:PL 0/1:71,8:79:39:39,0,1409 0/0:76,6:82:33:0,33,2015 0/1:71,9:80:72:72,0,1843 0/1:71,11:82:99:120,0,1850 +chr9 35074917 rs587118 T C 1111.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.809;DB;DP=190;Dels=0.01;FS=20.525;HaplotypeScore=8.1394;MLEAC=4;MLEAF=0.500;MQ=38.58;MQ0=0;MQRankSum=-2.570;QD=8.36;ReadPosRankSum=2.788;SB=-3.801e+01 GT:AD:DP:GQ:PL 1/1:18,19:37:25:705,25,0 0/0:57,0:57:99:0,165,2173 0/1:47,13:60:99:357,0,1505 0/1:28,6:34:98:98,0,955 +chr9 35377516 . T G 46.06 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.246;DP=119;Dels=0.00;FS=15.822;HaplotypeScore=20.3388;MLEAC=1;MLEAF=0.125;MQ=23.64;MQ0=0;MQRankSum=1.754;QD=1.77;ReadPosRankSum=-2.619;SB=-1.403e+00 GT:AD:DP:GQ:PL 0/1:22,4:26:82:82,0,311 0/0:30,1:33:18:0,18,377 0/0:37,1:38:24:0,24,508 0/0:22,0:22:15:0,15,143 +chr9 35378413 . T C 249.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.197;DP=186;Dels=0.01;FS=115.401;HaplotypeScore=8.2868;MLEAC=3;MLEAF=0.375;MQ=30.59;MQ0=0;MQRankSum=-1.080;QD=1.77;ReadPosRankSum=2.758;SB=0.778 GT:AD:DP:GQ:PL 0/0:42,2:44:36:0,36,1015 0/1:40,5:45:37:37,0,937 0/1:49,8:57:99:118,0,912 0/1:30,8:38:99:138,0,632 +chr9 35557974 . A T 121.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.290;DP=108;Dels=0.03;FS=12.113;HaplotypeScore=27.4286;MLEAC=4;MLEAF=0.500;MQ=23.13;MQ0=0;MQRankSum=-0.651;QD=1.13;ReadPosRankSum=1.859;SB=-2.104e+01 GT:AD:DP:GQ:PL 0/1:19,2:22:23:23,0,215 0/1:26,5:33:45:45,0,177 0/1:23,3:27:26:26,0,221 0/1:18,4:23:70:70,0,143 +chr9 35618053 rs35185125 C A 1601.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=4.868;DB;DP=431;Dels=0.00;FS=2.831;HaplotypeScore=1.4841;MLEAC=1;MLEAF=0.125;MQ=38.17;MQ0=0;MQRankSum=-2.262;QD=17.80;ReadPosRankSum=1.217;SB=-4.920e+02 GT:AD:DP:GQ:PL 0/0:106,0:106:99:0,292,3851 0/1:42,48:90:99:1638,0,1337 0/0:121,0:121:99:0,328,4364 0/0:114,0:114:99:0,328,4324 +chr9 35663228 rs10814266 G C 556.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.690;DB;DP=126;Dels=0.01;FS=1.172;HaplotypeScore=1.4038;MLEAC=3;MLEAF=0.375;MQ=39.87;MQ0=0;MQRankSum=-3.369;QD=6.33;ReadPosRankSum=-0.294;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,111,1501 0/1:25,9:34:99:267,0,881 0/1:28,9:37:99:253,0,980 0/1:13,4:17:80:80,0,420 +chr9 35679981 . G A 401.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.416;DP=110;Dels=0.03;FS=110.064;HaplotypeScore=12.0995;MLEAC=4;MLEAF=0.500;MQ=26.11;MQ0=0;MQRankSum=0.509;QD=4.56;ReadPosRankSum=2.269;SB=-1.532e+00 GT:AD:DP:GQ:PL 0/1:26,4:30:71:71,0,231 0/1:19,6:25:99:120,0,105 0/0:19,2:21:1:0,1,206 0/1:21,10:31:99:251,0,193 +chr9 35681122 rs1048638 C A 53.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.903;DB;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.6103;MLEAC=1;MLEAF=0.125;MQ=33.91;MQ0=0;MQRankSum=0.157;QD=4.50;ReadPosRankSum=0.628;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:33:0,33,435 0/1:9,3:12:90:90,0,143 0/0:15,0:15:39:0,39,528 0/0:11,0:11:27:0,27,327 +chr9 35706453 . T A 59.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.064;DP=51;Dels=0.00;FS=15.167;HaplotypeScore=10.0212;MLEAC=3;MLEAF=0.375;MQ=22.22;MQ0=0;MQRankSum=0.870;QD=1.46;ReadPosRankSum=1.677;SB=1.36 GT:AD:DP:GQ:PL 0/0:10,0:10:9:0,9,93 0/1:9,3:12:20:49,0,20 0/1:13,1:14:6:6,0,213 0/1:13,2:15:46:46,0,76 +chr9 35737379 . A G 118.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.318;DP=110;Dels=0.04;FS=18.899;HaplotypeScore=25.6494;MLEAC=4;MLEAF=0.500;MQ=28.33;MQ0=0;MQRankSum=-2.450;QD=1.08;ReadPosRankSum=0.311;SB=-1.825e+01 GT:AD:DP:GQ:PL 0/1:15,7:22:99:132,0,175 0/1:23,2:25:8:8,0,193 0/1:31,3:34:9:9,0,669 0/1:22,2:25:11:11,0,450 +chr9 35752252 rs1570249 G A 549.28 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.000;DB;DP=28;Dels=0.00;FS=10.981;HaplotypeScore=0.7480;MLEAC=7;MLEAF=0.875;MQ=28.28;MQ0=0;MQRankSum=2.204;QD=19.62;ReadPosRankSum=0.982;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:49:49,0,114 1/1:2,8:10:24:280,24,0 1/1:2,6:8:18:206,18,0 1/1:1,3:4:6:58,6,0 +chr9 35792899 . G A 35.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.695;DP=99;Dels=0.00;FS=22.015;HaplotypeScore=19.9645;MLEAC=2;MLEAF=0.250;MQ=23.13;MQ0=0;MQRankSum=-0.091;QD=0.64;ReadPosRankSum=0.213;SB=1.78 GT:AD:DP:GQ:PL 0/1:25,3:28:56:56,0,163 0/1:25,3:28:21:21,0,260 0/0:21,1:22:16:0,16,379 0/0:20,1:21:15:0,15,126 +chr9 35811151 . A G 1236.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.077;DP=276;Dels=0.00;FS=272.016;HaplotypeScore=12.1230;MLEAC=4;MLEAF=0.500;MQ=31.09;MQ0=0;MQRankSum=-4.528;QD=4.48;ReadPosRankSum=1.629;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/1:62,16:78:99:248,0,1262 0/1:46,15:61:99:287,0,966 0/1:60,18:78:99:378,0,1285 0/1:42,17:59:99:366,0,894 +chr9 36060039 . T C 183.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.812;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=11.3023;MLEAC=3;MLEAF=0.375;MQ=24.85;MQ0=0;MQRankSum=-2.754;QD=4.27;ReadPosRankSum=-0.398;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,5:14:91:91,0,95 0/1:8,5:13:62:62,0,119 0/1:9,6:15:73:73,0,119 0/0:4,0:4:9:0,9,105 +chr9 36170281 . A C 39.43 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.354;DP=89;Dels=0.00;FS=31.205;HaplotypeScore=8.7491;MLEAC=2;MLEAF=0.250;MQ=31.05;MQ0=0;MQRankSum=-1.999;QD=0.90;ReadPosRankSum=0.635;SB=7.03 GT:AD:DP:GQ:PL 0/1:20,4:24:33:33,0,357 0/0:14,1:16:27:0,27,329 0/0:28,1:29:1:0,1,414 0/1:17,3:20:46:46,0,340 +chr9 36246522 . A T 84.84 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.813;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=11.4849;MLEAC=4;MLEAF=0.500;MQ=21.70;MQ0=0;MQRankSum=1.020;QD=2.36;ReadPosRankSum=-0.566;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:16:24:24,0,26 0/0:11,0:11:3:0,3,22 0/1:12,2:14:50:50,0,73 1/1:4,2:6:6:54,6,0 +chr9 37014939 . A G 242.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.505;DP=193;Dels=0.03;FS=4.369;HaplotypeScore=10.4220;MLEAC=4;MLEAF=0.500;MQ=34.42;MQ0=0;MQRankSum=1.007;QD=1.26;ReadPosRankSum=1.715;SB=-2.251e-01 GT:AD:DP:GQ:PL 0/1:42,6:48:99:102,0,698 0/1:42,3:45:2:2,0,855 0/1:51,3:55:10:10,0,787 0/1:33,6:39:99:169,0,406 +chr9 37033861 . A C 31.51 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.296;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.5831;MLEAC=2;MLEAF=0.333;MQ=21.95;MQ0=0;MQRankSum=0.296;QD=7.88;ReadPosRankSum=-0.546;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,23 1/1:1,3:4:9:71,9,0 0/0:4,0:4:9:0,9,83 ./. +chr9 37429805 . G T 513.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.578;DP=116;Dels=0.00;FS=36.234;HaplotypeScore=5.1984;MLEAC=4;MLEAF=0.500;MQ=26.42;MQ0=0;MQRankSum=0.503;QD=4.43;ReadPosRankSum=1.286;SB=-1.099e-01 GT:AD:DP:GQ:PL 0/1:22,7:29:99:145,0,377 0/1:24,3:27:15:15,0,292 0/1:24,8:32:99:166,0,333 0/1:18,10:28:94:230,0,94 +chr9 37517681 rs10733488 C G 52.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.3670;MLEAC=4;MLEAF=1.00;MQ=22.32;MQ0=0;MQRankSum=0.736;QD=8.67;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:43,3,0 1/1:3,1:4:3:42,3,0 ./. +chr9 37537557 rs7044153 G A 1907.79 . AC=6;AF=0.750;AN=8;BaseQRankSum=5.961;DB;DP=115;Dels=0.01;FS=6.711;HaplotypeScore=4.3650;MLEAC=6;MLEAF=0.750;MQ=26.66;MQ0=0;MQRankSum=5.352;QD=16.59;ReadPosRankSum=-0.571;SB=-3.420e+02 GT:AD:DP:GQ:PL 0/1:14,12:26:34:363,0,34 0/1:16,8:25:92:219,0,92 1/1:8,27:35:52:801,52,0 1/1:10,18:28:31:571,31,0 +chr9 37745130 . A G 45.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.925;DP=247;Dels=0.00;FS=56.758;HaplotypeScore=10.8229;MLEAC=2;MLEAF=0.250;MQ=32.20;MQ0=0;MQRankSum=0.535;QD=0.49;ReadPosRankSum=-3.011;SB=-3.714e-01 GT:AD:DP:GQ:PL 0/0:70,2:73:99:0,119,1958 0/1:49,4:53:35:35,0,1075 0/0:77,2:81:99:0,122,2085 0/1:36,4:40:52:52,0,759 +chr9 38411345 rs12377125 A G 977.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.565;DB;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.8593;MLEAC=4;MLEAF=0.500;MQ=35.22;MQ0=0;MQRankSum=-1.007;QD=10.18;ReadPosRankSum=-0.197;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,10:30:99:304,0,603 0/1:11,11:22:99:349,0,353 0/1:12,8:20:99:232,0,367 0/1:18,6:24:99:135,0,527 +chr9 38616092 . C A 98.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.231;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=3.5987;MLEAC=4;MLEAF=0.500;MQ=12.28;MQ0=0;MQRankSum=-2.727;QD=0.45;ReadPosRankSum=0.094;SB=-1.228e-02 GT:AD:DP:GQ:PL 0/1:46,8:54:16:16,0,54 0/1:46,9:56:21:53,0,21 0/1:55,9:64:36:36,0,106 0/1:38,5:43:36:36,0,95 +chr9 39118205 rs113579706 G T 44.91 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.765;DB;DP=57;Dels=0.00;FS=3.723;HaplotypeScore=1.7997;MLEAC=4;MLEAF=0.500;MQ=16.53;MQ0=0;MQRankSum=2.171;QD=0.79;ReadPosRankSum=0.795;SB=-3.896e+01 GT:AD:DP:GQ:PL 0/1:8,1:9:17:17,0,30 0/1:16,3:19:1:1,0,143 0/1:14,2:17:44:44,0,60 0/1:11,1:12:23:23,0,50 +chr9 42718231 . C T 32.28 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.479;DP=16;Dels=0.00;FS=11.553;HaplotypeScore=1.3143;MLEAC=2;MLEAF=0.333;MQ=18.71;MQ0=0;MQRankSum=0.000;QD=10.76;ReadPosRankSum=0.185;SB=7.69 GT:AD:DP:GQ:PL 1/1:0,3:3:9:72,9,0 0/0:4,0:4:3:0,3,32 ./. 0/0:6,0:6:12:0,12,113 +chr9 43032085 . G A 39.69 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.754;DP=7;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=23.15;MQ0=0;MQRankSum=-0.550;QD=7.94;ReadPosRankSum=0.000;SB=1.30 GT:AD:DP:GQ:PL 0/1:1,1:2:19:26,0,19 ./. 0/0:2,0:2:6:0,6,62 1/1:0,3:3:6:54,6,0 +chr9 43629310 . C A 124.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.632;DP=108;Dels=0.00;FS=73.864;HaplotypeScore=4.7328;MLEAC=4;MLEAF=0.500;MQ=10.16;MQ0=0;MQRankSum=2.820;QD=1.69;ReadPosRankSum=-1.085;SB=3.47 GT:AD:DP:GQ:PL 0/1:20,2:22:21:21,0,39 0/0:32,2:34:3:0,3,26 0/1:22,5:27:52:67,0,52 1/1:21,4:25:9:81,9,0 +chr9 46115501 . T A 265.40 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.595;DP=119;Dels=0.00;FS=6.507;HaplotypeScore=2.0341;MLEAC=7;MLEAF=0.875;MQ=11.79;MQ0=0;MQRankSum=7.798;QD=2.23;ReadPosRankSum=-0.552;SB=-1.496e+02 GT:AD:DP:GQ:PL 0/1:8,17:25:19:46,0,19 1/1:9,22:31:21:162,21,0 1/1:11,23:34:9:78,9,0 1/1:14,15:29:3:22,3,0 +chr9 67038656 . C A 56.01 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.389;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=8.11;MQ0=0;MQRankSum=1.581;QD=2.15;ReadPosRankSum=0.959;SB=-2.600e+01 GT:AD:DP:GQ:PL 0/0:10,0:10:3:0,3,37 ./. 1/1:10,3:13:6:66,6,0 1/1:12,1:13:3:29,3,0 +chr9 68371753 . A G 35.32 . AC=2;AF=0.333;AN=6;BaseQRankSum=-2.343;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.3330;MLEAC=2;MLEAF=0.333;MQ=10.95;MQ0=0;MQRankSum=2.556;QD=0.91;ReadPosRankSum=1.150;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:6:0,6,75 ./. 0/1:17,1:18:27:27,0,50 0/1:19,2:21:13:46,0,13 +chr9 68433422 . C T 86.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.459;DP=70;Dels=0.01;FS=8.833;HaplotypeScore=4.3227;MLEAC=4;MLEAF=0.500;MQ=17.69;MQ0=0;MQRankSum=-0.110;QD=1.24;ReadPosRankSum=3.380;SB=-1.187e-02 GT:AD:DP:GQ:PL 0/1:12,9:21:41:41,0,181 0/1:13,8:21:22:22,0,46 0/1:12,7:19:47:47,0,88 0/1:4,4:8:19:19,0,36 +chr9 69067830 rs76889488 T C 340.23 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.840;DB;DP=114;Dels=0.00;FS=13.567;HaplotypeScore=1.9244;MLEAC=6;MLEAF=0.750;MQ=11.23;MQ0=0;MQRankSum=3.298;QD=2.98;ReadPosRankSum=1.202;SB=-1.797e+02 GT:AD:DP:GQ:PL 0/1:9,22:31:7:182,0,7 0/1:12,24:36:19:53,0,19 1/1:9,27:36:12:118,12,0 1/1:4,7:11:3:30,3,0 +chr9 69423792 rs78465713 A T 735.33 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.072;DB;DP=195;Dels=0.00;FS=1.252;HaplotypeScore=0.4623;MLEAC=7;MLEAF=0.875;MQ=10.52;MQ0=0;MQRankSum=0.618;QD=3.77;ReadPosRankSum=6.031;SB=-2.411e+02 GT:AD:DP:GQ:PL 1/1:5,41:46:18:177,18,0 1/1:40,29:69:12:107,12,0 0/1:11,40:53:14:270,0,14 1/1:6,21:27:24:225,24,0 +chr9 69423821 . C T 337.84 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.529;DP=87;Dels=0.00;FS=7.110;HaplotypeScore=1.3615;MLEAC=7;MLEAF=0.875;MQ=13.88;MQ0=0;MQRankSum=6.385;QD=3.88;ReadPosRankSum=-2.423;SB=-1.275e+02 GT:AD:DP:GQ:PL 1/1:8,7:15:12:104,12,0 1/1:33,4:37:3:24,3,0 0/1:14,8:22:8:151,0,8 1/1:9,4:13:12:100,12,0 +chr9 71491523 . A T 160.03 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.605;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6248;MLEAC=4;MLEAF=0.500;MQ=36.44;MQ0=0;MQRankSum=-2.598;QD=1.76;ReadPosRankSum=-1.406;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,4:24:81:81,0,411 0/1:25,4:29:89:89,0,481 0/1:27,2:29:9:9,0,573 0/1:8,1:9:23:23,0,74 +chr9 71864335 . G A 191.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.172;DP=43;Dels=0.00;FS=54.507;HaplotypeScore=2.6920;MLEAC=4;MLEAF=0.500;MQ=33.49;MQ0=0;MQRankSum=-1.702;QD=4.46;ReadPosRankSum=-0.484;SB=0.127 GT:AD:DP:GQ:PL 0/1:5,2:7:61:61,0,96 0/1:15,4:19:87:87,0,343 0/1:6,3:9:71:71,0,170 0/1:7,1:8:15:15,0,238 +chr9 72002915 rs77862868 G A 30.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.648;DB;DP=199;Dels=0.00;FS=1.604;HaplotypeScore=26.6428;MLEAC=2;MLEAF=0.250;MQ=33.47;MQ0=0;MQRankSum=2.104;QD=0.30;ReadPosRankSum=-4.596;SB=-4.149e+01 GT:AD:DP:GQ:PL 0/1:51,5:56:35:35,0,1592 0/1:41,4:45:37:37,0,1138 0/0:59,1:60:99:0,127,1977 0/0:38,0:38:99:0,105,1284 +chr9 72003036 rs867366 T C 937.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.247;DB;DP=143;Dels=0.01;FS=2.748;HaplotypeScore=6.0473;MLEAC=3;MLEAF=0.375;MQ=37.61;MQ0=0;MQRankSum=-2.371;QD=10.19;ReadPosRankSum=1.345;SB=-2.900e+02 GT:AD:DP:GQ:PL 0/1:22,10:32:99:264,0,735 0/0:50,0:50:99:0,138,1845 0/1:20,13:33:99:407,0,532 0/1:17,10:27:99:310,0,551 +chr9 72333207 . G T 116.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.549;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=2.1055;MLEAC=4;MLEAF=0.500;MQ=29.22;MQ0=0;MQRankSum=-2.492;QD=0.99;ReadPosRankSum=2.320;SB=-1.753e-02 GT:AD:DP:GQ:PL 0/1:32,4:36:25:25,0,561 0/1:26,4:30:41:41,0,453 0/1:22,6:28:26:26,0,402 0/1:18,5:23:67:67,0,287 +chr9 72472909 . A G 75.29 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.744;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7244;MLEAC=2;MLEAF=0.250;MQ=34.34;MQ0=0;MQRankSum=-0.855;QD=2.28;ReadPosRankSum=1.674;SB=0.695 GT:AD:DP:GQ:PL 0/0:25,1:27:10:0,10,413 0/1:19,2:21:47:47,0,170 0/0:36,2:38:8:0,8,624 0/1:9,3:12:69:69,0,77 +chr9 72962904 . T G 34.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.148;DP=68;Dels=0.01;FS=21.030;HaplotypeScore=22.5019;MLEAC=3;MLEAF=0.375;MQ=26.35;MQ0=0;MQRankSum=-0.333;QD=0.74;ReadPosRankSum=-0.592;SB=-2.179e+00 GT:AD:DP:GQ:PL 0/1:16,2:18:30:30,0,234 0/0:20,0:21:39:0,39,412 0/1:20,2:23:29:29,0,199 0/1:4,1:5:17:19,0,17 +chr9 73002769 . T A 45.46 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.558;DP=81;Dels=0.05;FS=16.588;HaplotypeScore=26.4658;MLEAC=2;MLEAF=0.250;MQ=22.64;MQ0=0;MQRankSum=0.940;QD=1.11;ReadPosRankSum=0.367;SB=-1.390e+00 GT:AD:DP:GQ:PL 0/0:14,1:15:18:0,18,198 0/1:14,2:16:42:42,0,97 0/0:20,1:23:1:0,1,181 0/1:21,2:23:43:43,0,108 +chr9 73457861 rs1337030 A G 1860.83 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.488;DB;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.9134;MLEAC=6;MLEAF=0.750;MQ=30.69;MQ0=0;MQRankSum=-3.330;QD=18.80;ReadPosRankSum=0.631;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,9:36:99:185,0,847 1/1:2,21:23:63:715,63,0 1/1:2,20:22:57:646,57,0 0/1:4,14:18:21:361,0,21 +chr9 74360469 . C T 44.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.914;DP=161;Dels=0.00;FS=23.108;HaplotypeScore=3.0537;MLEAC=1;MLEAF=0.125;MQ=36.87;MQ0=0;MQRankSum=-3.886;QD=1.84;ReadPosRankSum=-0.052;SB=-8.079e+00 GT:AD:DP:GQ:PL 0/0:50,3:53:51:0,51,1555 0/0:37,3:40:0:0,0,891 0/0:41,3:44:30:0,30,1172 0/1:19,5:24:79:79,0,484 +chr9 74842939 . T G 192.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.542;DP=87;Dels=0.02;FS=18.736;HaplotypeScore=9.2265;MLEAC=4;MLEAF=0.500;MQ=33.98;MQ0=0;MQRankSum=-2.961;QD=2.22;ReadPosRankSum=2.929;SB=-1.442e-01 GT:AD:DP:GQ:PL 0/1:18,5:23:70:70,0,463 0/1:22,3:25:50:50,0,385 0/1:14,4:18:99:101,0,231 0/1:16,3:19:14:14,0,191 +chr9 75445667 rs183377835 T A 42.83 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.807;DB;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.8016;MLEAC=3;MLEAF=0.500;MQ=22.81;MQ0=0;MQRankSum=1.883;QD=2.38;ReadPosRankSum=-1.345;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,2:6:6:66,6,0 0/1:11,1:12:16:16,0,42 0/0:8,0:8:3:0,3,39 ./. +chr9 75526799 . A T 98.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.477;DP=88;Dels=0.02;FS=0.000;HaplotypeScore=4.5029;MLEAC=3;MLEAF=0.375;MQ=32.15;MQ0=0;MQRankSum=-2.334;QD=1.62;ReadPosRankSum=2.852;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:54:0,54,669 0/1:18,3:21:48:48,0,234 0/1:24,3:27:58:58,0,323 0/1:9,2:11:36:36,0,113 +chr9 77423160 . G T 162.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.890;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.2419;MLEAC=4;MLEAF=0.500;MQ=33.92;MQ0=0;MQRankSum=-2.132;QD=1.63;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,2:20:36:36,0,258 0/1:30,7:37:99:142,0,636 0/1:29,3:32:22:22,0,514 0/1:10,1:11:4:4,0,182 +chr9 78506167 . G C 37.52 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.064;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=11.0131;MLEAC=2;MLEAF=0.250;MQ=19.59;MQ0=0;MQRankSum=0.776;QD=1.17;ReadPosRankSum=1.534;SB=-1.282e-01 GT:AD:DP:GQ:PL 0/0:7,2:9:6:0,6,49 0/1:11,1:12:17:17,0,52 0/1:17,3:20:61:61,0,68 0/0:14,0:14:21:0,21,173 +chr9 78936205 rs2259680 A G 237.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.950;DB;DP=19;Dels=0.00;FS=3.139;HaplotypeScore=0.7481;MLEAC=4;MLEAF=0.500;MQ=38.04;MQ0=0;MQRankSum=-1.528;QD=18.25;ReadPosRankSum=-1.197;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,5:5:15:193,15,0 0/0:6,0:6:15:0,15,201 0/1:2,1:3:33:35,0,33 0/1:3,2:5:57:57,0,114 +chr9 78938186 rs2803429 G C 1489.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.756;DB;DP=125;Dels=0.00;FS=1.281;HaplotypeScore=1.9242;MLEAC=4;MLEAF=0.500;MQ=37.69;MQ0=0;MQRankSum=-1.756;QD=16.55;ReadPosRankSum=-0.218;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:2,24:26:38:897,38,0 0/0:35,0:35:90:0,90,1202 0/1:29,10:39:99:294,0,1053 0/1:14,11:25:99:347,0,339 +chr9 79318812 rs56261747 C T 1683.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.873;DB;DP=504;Dels=0.00;FS=12.067;HaplotypeScore=0.7498;MLEAC=1;MLEAF=0.125;MQ=36.78;MQ0=0;MQRankSum=-5.015;QD=12.29;ReadPosRankSum=3.040;SB=-4.490e+02 GT:AD:DP:GQ:PL 0/1:78,59:137:99:1720,0,2362 0/0:150,0:150:99:0,442,5728 0/0:146,0:146:99:0,436,5529 0/0:71,0:71:99:0,208,2621 +chr9 80793401 . C T 64.15 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.673;DP=45;Dels=0.02;FS=2.576;HaplotypeScore=16.2095;MLEAC=3;MLEAF=0.375;MQ=18.11;MQ0=0;MQRankSum=1.804;QD=1.94;ReadPosRankSum=-2.503;SB=4.98 GT:AD:DP:GQ:PL 0/1:7,2:9:23:48,0,23 0/0:12,0:12:3:0,3,23 0/1:7,2:10:14:14,0,49 0/1:10,2:13:13:43,0,13 +chr9 80863803 . T G 446.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.525;DP=100;Dels=0.01;FS=37.954;HaplotypeScore=11.2541;MLEAC=4;MLEAF=0.500;MQ=28.02;MQ0=0;MQRankSum=1.138;QD=4.47;ReadPosRankSum=-2.121;SB=0.594 GT:AD:DP:GQ:PL 0/1:22,5:28:88:88,0,234 0/1:24,7:31:97:97,0,213 0/1:22,7:29:80:195,0,80 0/1:7,4:11:76:109,0,76 +chr9 82465916 . C A 262.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.915;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=1.1649;MLEAC=4;MLEAF=0.500;MQ=20.48;MQ0=0;MQRankSum=-0.471;QD=2.68;ReadPosRankSum=1.865;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,7:23:88:88,0,150 0/1:18,8:26:67:67,0,154 0/1:22,11:33:99:102,0,228 0/1:9,6:15:48:48,0,90 +chr9 82465925 . A G 232.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.079;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.5733;MLEAC=4;MLEAF=0.500;MQ=22.03;MQ0=0;MQRankSum=-2.198;QD=2.30;ReadPosRankSum=6.572;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,7:24:88:88,0,187 0/1:20,8:28:52:52,0,315 0/1:19,13:32:93:93,0,379 0/1:11,6:17:42:42,0,159 +chr9 84200529 rs2228172 T C 154.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.778;DB;DP=108;Dels=0.02;FS=3.658;HaplotypeScore=2.9461;MLEAC=1;MLEAF=0.125;MQ=29.54;MQ0=0;MQRankSum=0.300;QD=7.05;ReadPosRankSum=0.732;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:14,7:21:99:191,0,234 0/0:21,0:21:30:0,30,310 0/0:38,0:38:78:0,78,877 0/0:26,0:26:54:0,54,611 +chr9 84300694 rs2244337 A C 2811.59 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.561;DB;DP=111;Dels=0.00;FS=10.855;HaplotypeScore=1.9745;MLEAC=7;MLEAF=0.875;MQ=35.70;MQ0=0;MQRankSum=0.254;QD=25.33;ReadPosRankSum=-1.001;SB=-1.037e+03 GT:AD:DP:GQ:PL 0/1:25,11:36:99:317,0,744 1/1:3,32:35:30:1161,30,0 1/1:2,30:32:71:1142,71,0 1/1:2,6:8:18:236,18,0 +chr9 84302222 . A G 98.31 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.386;DP=18;Dels=0.00;FS=7.830;HaplotypeScore=0.4110;MLEAC=7;MLEAF=0.875;MQ=16.09;MQ0=0;MQRankSum=0.965;QD=5.46;ReadPosRankSum=0.865;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:24,3,0 1/1:3,3:6:6:44,6,0 1/1:1,1:2:3:32,3,0 0/1:5,3:8:21:39,0,21 +chr9 84603829 . G C 140.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.885;DP=249;Dels=0.00;FS=36.918;HaplotypeScore=2.1293;MLEAC=3;MLEAF=0.375;MQ=15.00;MQ0=0;MQRankSum=4.351;QD=0.69;ReadPosRankSum=0.145;SB=24.15 GT:AD:DP:GQ:PL 0/1:61,2:63:57:57,0,119 0/1:63,4:67:82:82,0,203 0/1:70,2:72:43:43,0,116 0/0:46,0:47:6:0,6,71 +chr9 85615303 . A C 410.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.758;DP=95;Dels=0.00;FS=5.980;HaplotypeScore=8.4771;MLEAC=4;MLEAF=0.500;MQ=28.59;MQ0=0;MQRankSum=-1.805;QD=4.32;ReadPosRankSum=1.541;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,7:23:99:139,0,261 0/1:16,9:25:99:115,0,352 0/1:19,8:28:99:108,0,311 0/1:13,5:19:91:91,0,160 +chr9 85615442 . A C 133.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.014;DP=95;Dels=0.03;FS=17.532;HaplotypeScore=9.3187;MLEAC=4;MLEAF=0.500;MQ=25.81;MQ0=0;MQRankSum=0.331;QD=1.41;ReadPosRankSum=-1.308;SB=0.021 GT:AD:DP:GQ:PL 0/1:13,4:17:60:60,0,136 0/1:22,2:24:25:25,0,201 0/1:32,2:35:43:43,0,195 0/1:14,2:16:48:48,0,76 +chr9 85905737 rs942282 C G 183.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.541;DB;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4138;MLEAC=4;MLEAF=0.500;MQ=30.66;MQ0=0;MQRankSum=-1.636;QD=2.78;ReadPosRankSum=-1.395;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,3:16:66:66,0,324 0/1:11,2:13:52:52,0,196 0/1:9,4:14:83:83,0,183 0/1:20,3:23:25:25,0,569 +chr9 85905759 . G T 33.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.110;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=5.6324;MLEAC=2;MLEAF=0.250;MQ=27.19;MQ0=0;MQRankSum=1.683;QD=1.60;ReadPosRankSum=0.179;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:6:0,6,46 0/0:8,0:8:9:0,9,90 0/1:6,1:7:26:26,0,79 0/1:12,2:14:48:48,0,162 +chr9 85987879 rs57558822 GA G 172.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.165;DB;DP=109;FS=6.235;HaplotypeScore=29.7432;MLEAC=2;MLEAF=0.250;MQ=25.69;MQ0=0;MQRankSum=-0.149;QD=2.93;RPA=12,11;RU=A;ReadPosRankSum=1.404;SB=-9.899e+00;STR GT:AD:DP:GQ:PL 0/1:17,1:17:42:42,0,107 0/1:25,8:25:81:181,0,81 0/0:34,0:22:12:0,12,136 0/0:11,0:6:15:0,15,116 +chr9 86587617 . G A 66.53 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.498;DP=29;Dels=0.00;FS=5.527;HaplotypeScore=1.4783;MLEAC=4;MLEAF=0.500;MQ=19.56;MQ0=0;MQRankSum=1.777;QD=3.33;ReadPosRankSum=1.564;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:12:12,0,92 0/0:9,0:9:3:0,3,32 0/1:6,3:9:61:61,0,92 1/1:3,1:4:3:35,3,0 +chr9 86900510 . T C 35.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.591;DP=125;Dels=0.00;FS=4.612;HaplotypeScore=9.0037;MLEAC=3;MLEAF=0.375;MQ=35.04;MQ0=0;MQRankSum=-4.388;QD=0.38;ReadPosRankSum=0.342;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:31,1:32:26:0,26,528 0/1:38,7:45:48:48,0,870 0/1:29,3:32:24:24,0,573 0/1:15,1:16:5:5,0,260 +chr9 88190412 rs146333511 G A 656.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.535;DB;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=1.2621;MLEAC=3;MLEAF=0.375;MQ=31.69;MQ0=0;MQRankSum=-2.918;QD=6.70;ReadPosRankSum=2.056;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,120,1436 0/1:21,15:36:99:354,0,595 0/1:30,12:42:99:254,0,929 0/1:14,4:19:92:92,0,241 +chr9 88650020 . T C 97.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.677;DP=173;Dels=0.01;FS=77.718;HaplotypeScore=9.1013;MLEAC=2;MLEAF=0.250;MQ=31.58;MQ0=0;MQRankSum=-4.502;QD=1.21;ReadPosRankSum=2.569;SB=-1.452e+00 GT:AD:DP:GQ:PL 0/0:41,4:46:7:0,7,921 0/1:34,6:40:68:68,0,753 0/0:44,3:47:43:0,43,988 0/1:32,7:39:70:70,0,595 +chr9 89627975 . G T 46.17 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.351;DP=107;Dels=0.01;FS=50.657;HaplotypeScore=3.7001;MLEAC=4;MLEAF=0.500;MQ=19.42;MQ0=0;MQRankSum=1.257;QD=0.43;ReadPosRankSum=-1.621;SB=-1.208e+00 GT:AD:DP:GQ:PL 0/1:19,5:24:26:26,0,172 0/1:28,2:30:11:11,0,122 0/1:29,3:32:46:46,0,270 0/1:19,1:20:4:4,0,167 +chr9 90315286 rs7044579 G A 827.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.149;DB;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.2416;MLEAC=3;MLEAF=0.375;MQ=34.67;MQ0=0;MQRankSum=-0.721;QD=11.66;ReadPosRankSum=-0.649;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,13:27:99:420,0,376 0/0:28,0:28:81:0,81,1039 0/1:18,8:26:99:234,0,469 0/1:11,7:18:99:217,0,317 +chr9 90432159 rs11141977 G A 142.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.850;DB;DP=97;Dels=0.00;FS=10.169;HaplotypeScore=1.9037;MLEAC=3;MLEAF=0.375;MQ=18.61;MQ0=0;MQRankSum=2.198;QD=2.27;ReadPosRankSum=-0.701;SB=-6.587e+01 GT:AD:DP:GQ:PL 0/1:22,7:29:75:75,0,141 0/0:34,0:34:24:0,24,274 0/1:18,6:24:68:68,0,91 0/1:8,2:10:43:43,0,54 +chr9 90501271 . G A 556.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.008;DP=168;Dels=0.00;FS=63.227;HaplotypeScore=2.0289;MLEAC=4;MLEAF=0.500;MQ=18.08;MQ0=0;MQRankSum=5.976;QD=3.31;ReadPosRankSum=-0.762;SB=0.777 GT:AD:DP:GQ:PL 0/1:33,6:39:99:136,0,112 0/1:27,9:36:99:154,0,127 0/1:44,6:50:99:175,0,120 0/1:36,7:43:99:134,0,129 +chr9 90584946 . T A 88.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.177;DP=42;Dels=0.02;FS=2.783;HaplotypeScore=9.5214;MLEAC=4;MLEAF=0.500;MQ=17.10;MQ0=0;MQRankSum=0.475;QD=2.96;ReadPosRankSum=1.342;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,3:9:60:60,0,75 0/0:10,2:12:9:0,9,94 1/1:3,4:7:3:27,3,0 0/1:11,2:13:15:45,0,15 +chr9 91953672 rs80298072 T C 105.45 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.880;DB;DP=21;Dels=0.00;FS=2.754;HaplotypeScore=1.6879;MLEAC=4;MLEAF=0.667;MQ=20.35;MQ0=0;MQRankSum=1.758;QD=11.72;ReadPosRankSum=1.152;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:78,6,0 0/0:9,0:9:9:0,9,113 1/1:3,2:5:6:70,6,0 ./. +chr9 91978916 . A T 92.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.749;DP=112;Dels=0.00;FS=4.617;HaplotypeScore=2.1158;MLEAC=3;MLEAF=0.375;MQ=30.66;MQ0=0;MQRankSum=-1.301;QD=1.07;ReadPosRankSum=0.237;SB=-1.008e+00 GT:AD:DP:GQ:PL 0/0:26,0:26:51:0,51,605 0/1:21,3:24:54:54,0,391 0/1:31,2:33:6:6,0,539 0/1:25,4:29:74:74,0,381 +chr9 92008507 . G T 40.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.046;DP=117;Dels=0.00;FS=26.778;HaplotypeScore=0.4937;MLEAC=2;MLEAF=0.250;MQ=34.95;MQ0=0;MQRankSum=-0.788;QD=0.82;ReadPosRankSum=0.328;SB=-1.997e+00 GT:AD:DP:GQ:PL 0/1:29,3:32:23:23,0,706 0/0:27,1:28:10:0,10,524 0/0:39,0:39:99:0,99,1274 0/1:15,3:18:59:59,0,338 +chr9 94087793 rs16907384 T C 172.62 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.445;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=36.79;MQ0=0;MQRankSum=-2.717;QD=13.28;ReadPosRankSum=0.058;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,7:13:99:208,0,170 0/0:6,0:6:18:0,18,240 0/0:6,0:6:18:0,18,249 0/0:1,0:1:3:0,3,41 +chr9 94519576 . A T 90.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.135;DP=142;Dels=0.00;FS=59.957;HaplotypeScore=5.4216;MLEAC=4;MLEAF=0.500;MQ=30.13;MQ0=0;MQRankSum=-2.067;QD=0.83;ReadPosRankSum=0.542;SB=-1.676e+00 GT:AD:DP:GQ:PL 0/0:30,3:33:2:0,2,599 0/1:30,4:35:41:41,0,650 0/1:34,5:39:62:62,0,809 0/1:32,3:35:28:28,0,456 +chr9 94843154 . T C 105.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.662;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.6991;MLEAC=3;MLEAF=0.375;MQ=29.07;MQ0=0;MQRankSum=0.412;QD=2.34;ReadPosRankSum=0.412;SB=-2.760e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:12:0,12,121 0/1:11,5:16:73:100,0,73 0/1:19,2:21:23:23,0,167 0/1:7,1:8:25:25,0,77 +chr9 95298266 . T C 527.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.097;DP=168;Dels=0.00;FS=101.074;HaplotypeScore=1.6784;MLEAC=4;MLEAF=0.500;MQ=34.13;MQ0=0;MQRankSum=-3.477;QD=3.14;ReadPosRankSum=1.262;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:46,6:52:82:82,0,977 0/1:40,9:49:99:156,0,983 0/1:42,11:53:99:251,0,845 0/1:10,4:14:81:81,0,160 +chr9 95618018 . A C 43.41 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.495;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1257;MLEAC=2;MLEAF=0.250;MQ=33.46;MQ0=0;MQRankSum=-2.036;QD=0.69;ReadPosRankSum=1.180;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,2:36:36:0,36,693 0/0:36,2:38:1:0,1,474 0/1:29,2:31:30:30,0,185 0/1:29,3:32:53:53,0,392 +chr9 95645020 rs2296060 A C 87.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.800;DB;DP=263;Dels=0.00;FS=2.588;HaplotypeScore=0.4960;MLEAC=1;MLEAF=0.125;MQ=15.96;MQ0=0;MQRankSum=0.191;QD=1.76;ReadPosRankSum=-1.146;SB=-1.497e+01 GT:AD:DP:GQ:PL 0/0:62,1:63:33:0,33,358 0/1:39,11:50:99:124,0,229 0/0:80,0:80:42:0,42,515 0/0:70,0:70:45:0,45,509 +chr9 95649159 . C A 94.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.126;DP=315;Dels=0.00;FS=8.307;HaplotypeScore=8.5889;MLEAC=4;MLEAF=0.500;MQ=11.42;MQ0=0;MQRankSum=2.539;QD=0.30;ReadPosRankSum=0.514;SB=-8.587e-02 GT:AD:DP:GQ:PL 0/1:64,3:67:43:43,0,95 0/1:72,8:80:32:32,0,90 0/1:85,3:88:16:16,0,72 0/1:73,6:79:46:46,0,85 +chr9 95649260 . T C 74.07 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.628;DP=276;Dels=0.00;FS=39.769;HaplotypeScore=2.9386;MLEAC=4;MLEAF=0.500;MQ=7.84;MQ0=0;MQRankSum=2.566;QD=0.27;ReadPosRankSum=-2.965;SB=-2.986e-01 GT:AD:DP:GQ:PL 0/1:72,1:73:12:12,0,68 0/1:67,2:69:33:33,0,59 0/1:64,5:69:18:59,0,18 0/1:62,3:65:12:12,0,79 +chr9 95838178 . G T 108.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.754;DP=115;Dels=0.00;FS=69.023;HaplotypeScore=3.4408;MLEAC=2;MLEAF=0.250;MQ=34.06;MQ0=0;MQRankSum=0.987;QD=1.70;ReadPosRankSum=-0.844;SB=0.878 GT:AD:DP:GQ:PL 0/0:21,0:21:54:0,54,684 0/0:29,1:30:54:0,54,871 0/1:31,6:37:99:123,0,833 0/1:24,3:27:27:27,0,539 +chr9 96026253 . A C 48.48 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.962;DP=69;Dels=0.00;FS=16.167;HaplotypeScore=2.3400;MLEAC=2;MLEAF=0.250;MQ=34.26;MQ0=0;MQRankSum=-0.503;QD=1.56;ReadPosRankSum=-0.082;SB=-2.294e+00 GT:AD:DP:GQ:PL 0/1:19,2:21:8:8,0,535 0/0:19,1:20:24:0,24,586 0/0:18,0:18:48:0,48,612 0/1:7,3:10:65:80,0,65 +chr9 96069087 . C A 82.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.963;DP=141;Dels=0.01;FS=24.946;HaplotypeScore=34.8345;MLEAC=3;MLEAF=0.375;MQ=25.37;MQ0=0;MQRankSum=-0.375;QD=0.79;ReadPosRankSum=-0.050;SB=2.28 GT:AD:DP:GQ:PL 0/1:27,3:32:33:33,0,448 0/1:25,3:29:48:48,0,229 0/1:35,5:43:45:45,0,552 0/0:32,1:36:27:0,27,537 +chr9 96213667 . C T 78.03 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.685;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.8636;MLEAC=2;MLEAF=0.250;MQ=21.66;MQ0=0;MQRankSum=1.739;QD=5.20;ReadPosRankSum=1.634;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:3:0,3,26 0/0:4,0:4:12:0,12,104 0/1:5,3:8:47:70,0,47 0/1:5,2:7:19:48,0,19 +chr9 96715427 . A C 42.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DP=14;Dels=0.00;FS=3.310;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=18.73;MQ0=0;MQRankSum=0.736;QD=7.00;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,1:5:3:43,3,0 ./. ./. 1/1:0,1:1:3:32,3,0 +chr9 97050295 rs3131906 A G 123.75 . AC=5;AF=0.833;AN=6;BaseQRankSum=3.252;DB;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5938;MLEAC=5;MLEAF=0.833;MQ=10.28;MQ0=0;MQRankSum=-2.049;QD=1.96;ReadPosRankSum=1.819;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:9:101,9,0 1/1:2,21:23:3:32,3,0 0/1:3,20:23:21:30,0,21 ./. +chr9 97063226 . T G 43.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.845;DP=192;Dels=0.00;FS=25.061;HaplotypeScore=4.9506;MLEAC=2;MLEAF=0.250;MQ=24.76;MQ0=0;MQRankSum=-2.116;QD=0.43;ReadPosRankSum=1.912;SB=0.669 GT:AD:DP:GQ:PL 0/0:46,5:51:58:0,58,876 0/1:43,5:48:58:58,0,484 0/1:49,5:54:27:27,0,590 0/0:37,2:39:20:0,20,501 +chr9 97087561 . A T 53.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.405;DP=70;Dels=0.01;FS=31.224;HaplotypeScore=2.8330;MLEAC=3;MLEAF=0.375;MQ=19.33;MQ0=0;MQRankSum=1.537;QD=0.93;ReadPosRankSum=2.220;SB=0.809 GT:AD:DP:GQ:PL 0/0:12,0:12:15:0,15,138 0/1:19,4:23:81:81,0,127 0/1:12,2:14:2:2,0,143 0/1:19,1:20:10:10,0,62 +chr9 97090990 . C G 50.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.635;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.8105;MLEAC=3;MLEAF=0.375;MQ=15.45;MQ0=0;MQRankSum=0.969;QD=1.00;ReadPosRankSum=2.116;SB=-5.801e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:21:21,0,24 0/1:13,2:15:17:17,0,41 0/1:14,5:19:37:54,0,37 0/0:14,1:15:6:0,6,50 +chr9 97321127 rs1048510 T C 644.71 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.276;DB;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=0.9740;MLEAC=5;MLEAF=0.625;MQ=35.85;MQ0=0;MQRankSum=-3.901;QD=14.99;ReadPosRankSum=3.060;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:18:229,18,0 0/1:5,4:9:99:109,0,182 0/1:10,7:17:99:183,0,312 0/1:4,5:9:99:169,0,139 +chr9 97333843 . A G 81.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.486;DP=99;Dels=0.02;FS=10.543;HaplotypeScore=17.2881;MLEAC=3;MLEAF=0.375;MQ=27.90;MQ0=0;MQRankSum=-0.297;QD=1.14;ReadPosRankSum=-0.273;SB=-3.993e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:52:78,0,52 0/1:19,2:22:23:23,0,341 0/0:26,0:27:33:0,33,384 0/1:25,2:27:24:24,0,408 +chr9 97405431 . T A 32.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.380;DP=10;Dels=0.00;FS=3.332;HaplotypeScore=0.6651;MLEAC=4;MLEAF=1.00;MQ=19.27;MQ0=0;MQRankSum=1.380;QD=4.57;ReadPosRankSum=-0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:39,3,0 ./. 1/1:4,1:5:3:26,3,0 ./. +chr9 97522750 rs140563732 A G 322.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.000;DB;DP=114;Dels=0.00;FS=25.522;HaplotypeScore=2.4565;MLEAC=4;MLEAF=0.500;MQ=34.02;MQ0=0;MQRankSum=-4.976;QD=2.83;ReadPosRankSum=1.021;SB=-3.537e-01 GT:AD:DP:GQ:PL 0/1:26,7:33:99:122,0,709 0/1:16,7:23:99:115,0,399 0/1:26,8:35:99:118,0,748 0/1:21,2:23:10:10,0,598 +chr9 97535495 . T G 150.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.199;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=20.1215;MLEAC=4;MLEAF=0.500;MQ=25.79;MQ0=0;MQRankSum=1.517;QD=1.23;ReadPosRankSum=3.293;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,3:32:49:49,0,341 0/1:34,4:38:54:54,0,419 0/1:31,2:34:27:27,0,363 0/1:14,4:18:63:63,0,77 +chr9 97848308 . G A 50.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.718;DP=64;Dels=0.00;FS=27.905;HaplotypeScore=4.7654;MLEAC=2;MLEAF=0.250;MQ=28.07;MQ0=0;MQRankSum=0.230;QD=1.53;ReadPosRankSum=-0.259;SB=0.700 GT:AD:DP:GQ:PL 0/0:15,0:15:36:0,36,363 0/1:18,3:21:55:55,0,314 0/0:16,0:16:27:0,27,337 0/1:10,2:12:37:37,0,174 +chr9 97873823 . T C 82.20 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.090;DP=151;Dels=0.00;FS=47.647;HaplotypeScore=8.8689;MLEAC=2;MLEAF=0.250;MQ=29.76;MQ0=0;MQRankSum=0.067;QD=1.01;ReadPosRankSum=2.570;SB=-2.628e+00 GT:AD:DP:GQ:PL 0/1:33,4:37:48:48,0,610 0/0:33,2:35:4:0,4,562 0/0:33,2:35:7:0,7,670 0/1:39,5:44:74:74,0,602 +chr9 98003046 . T A 46.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.410;DP=101;Dels=0.04;FS=8.519;HaplotypeScore=9.6397;MLEAC=2;MLEAF=0.250;MQ=26.59;MQ0=0;MQRankSum=-1.390;QD=1.11;ReadPosRankSum=0.116;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:42:0,42,391 0/1:25,5:30:46:46,0,323 0/0:32,1:33:16:0,16,405 0/1:7,3:10:14:42,0,14 +chr9 98678556 . T A 45.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.554;DP=163;Dels=0.02;FS=8.224;HaplotypeScore=4.1556;MLEAC=1;MLEAF=0.125;MQ=32.14;MQ0=0;MQRankSum=1.560;QD=1.16;ReadPosRankSum=-1.279;SB=-6.419e+00 GT:AD:DP:GQ:PL 0/0:47,0:48:45:0,45,512 0/0:39,0:39:60:0,60,680 0/1:33,4:38:80:80,0,405 0/0:34,1:35:0:0,0,379 +chr9 99060882 rs3925451 G A 99.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.387;DB;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=25.87;MQ0=0;MQRankSum=0.717;QD=12.45;ReadPosRankSum=-0.717;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:9:0,9,97 0/1:2,3:5:21:80,0,21 0/1:1,1:2:21:33,0,21 1/1:0,1:1:3:30,3,0 +chr9 99413620 . A T 84.38 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.427;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.9716;MLEAC=2;MLEAF=0.250;MQ=30.70;MQ0=0;MQRankSum=0.882;QD=2.28;ReadPosRankSum=0.536;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,5:27:99:108,0,262 0/0:28,1:29:24:0,24,601 0/0:31,1:32:7:0,7,420 0/1:9,1:10:17:17,0,88 +chr9 99798824 . G T 104.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.747;DP=113;Dels=0.00;FS=21.187;HaplotypeScore=2.5294;MLEAC=4;MLEAF=0.500;MQ=23.81;MQ0=0;MQRankSum=2.592;QD=0.93;ReadPosRankSum=-1.940;SB=-9.320e-02 GT:AD:DP:GQ:PL 0/1:22,2:24:20:20,0,262 0/1:32,3:35:19:19,0,419 0/1:30,3:33:32:32,0,510 0/1:17,4:21:76:76,0,142 +chr9 99799104 rs10980243 T G 343.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.615;DB;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3851;MLEAC=3;MLEAF=0.375;MQ=24.68;MQ0=0;MQRankSum=2.451;QD=9.55;ReadPosRankSum=0.353;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:30:0,30,357 0/1:11,7:18:99:222,0,127 0/1:7,5:12:73:142,0,73 0/1:4,2:6:23:23,0,51 +chr9 100331108 . A T 186.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.468;DP=102;Dels=0.02;FS=0.000;HaplotypeScore=3.0319;MLEAC=2;MLEAF=0.250;MQ=34.43;MQ0=0;MQRankSum=-0.007;QD=3.52;ReadPosRankSum=1.955;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:33:0,33,353 0/1:26,6:32:99:113,0,435 0/0:28,1:29:30:0,30,529 0/1:13,6:19:99:115,0,114 +chr9 100819070 rs3199064 T G 148.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.762;DB;DP=38;Dels=0.00;FS=2.465;HaplotypeScore=0.9984;MLEAC=1;MLEAF=0.125;MQ=36.31;MQ0=0;MQRankSum=-2.163;QD=16.45;ReadPosRankSum=1.628;SB=-1.058e+01 GT:AD:DP:GQ:PL 0/0:6,0:6:18:0,18,252 0/1:3,6:9:50:184,0,50 0/0:12,0:12:36:0,36,483 0/0:11,0:11:30:0,30,365 +chr9 100823084 rs13049 T C 676.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.712;DB;DP=260;Dels=0.00;FS=2.002;HaplotypeScore=0.9988;MLEAC=1;MLEAF=0.125;MQ=37.91;MQ0=0;MQRankSum=-2.603;QD=11.88;ReadPosRankSum=1.534;SB=-2.630e+02 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,162,2128 0/1:34,23:57:99:713,0,1022 0/0:81,0:81:99:0,235,3043 0/0:64,0:64:99:0,184,2407 +chr9 100857157 . A G 90.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.226;DP=149;Dels=0.00;FS=96.333;HaplotypeScore=3.4573;MLEAC=3;MLEAF=0.375;MQ=38.90;MQ0=0;MQRankSum=-3.908;QD=0.81;ReadPosRankSum=1.280;SB=0.597 GT:AD:DP:GQ:PL 0/0:34,2:36:18:0,18,1036 0/1:42,6:48:75:75,0,1178 0/1:32,3:35:18:18,0,866 0/1:26,4:30:41:41,0,759 +chr9 100894467 . C T 47.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.318;DP=43;Dels=0.00;FS=31.130;HaplotypeScore=5.5355;MLEAC=3;MLEAF=0.375;MQ=29.00;MQ0=0;MQRankSum=-1.599;QD=1.48;ReadPosRankSum=-0.240;SB=0.366 GT:AD:DP:GQ:PL 0/1:9,2:11:16:16,0,180 0/1:4,1:5:13:13,0,105 0/1:12,4:16:61:61,0,222 0/0:11,0:11:21:0,21,250 +chr9 100900111 rs151251120 TC T 150.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.660;DB;DP=14;FS=0.000;HaplotypeScore=3.7464;MLEAC=2;MLEAF=0.250;MQ=30.81;MQ0=0;MQRankSum=-0.811;QD=15.06;RPA=3,2;RU=C;ReadPosRankSum=1.093;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:3,5:8:98:164,0,98 0/0:2,0:1:3:0,3,41 0/0:2,0:2:6:0,6,81 0/1:1,1:2:35:35,0,36 +chr9 100919994 . G T 145.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.917;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=3.3597;MLEAC=4;MLEAF=0.500;MQ=36.64;MQ0=0;MQRankSum=-4.101;QD=1.32;ReadPosRankSum=-0.669;SB=1.99 GT:AD:DP:GQ:PL 0/1:23,3:26:30:30,0,372 0/1:24,6:31:99:107,0,478 0/1:25,3:28:44:44,0,406 0/1:19,3:24:6:6,0,419 +chr9 101777733 . C T 56.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.209;DP=98;Dels=0.02;FS=13.293;HaplotypeScore=13.8522;MLEAC=2;MLEAF=0.250;MQ=29.73;MQ0=0;MQRankSum=-1.171;QD=1.12;ReadPosRankSum=1.418;SB=-1.266e-02 GT:AD:DP:GQ:PL 0/0:25,0:25:45:0,45,474 0/1:21,3:24:35:35,0,317 0/0:20,1:22:6:0,6,326 0/1:20,4:25:62:62,0,277 +chr9 101809995 rs184517263 G A 737.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.177;DB;DP=226;Dels=0.00;FS=8.917;HaplotypeScore=1.8766;MLEAC=1;MLEAF=0.125;MQ=37.13;MQ0=0;MQRankSum=-3.991;QD=15.70;ReadPosRankSum=2.157;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,27:47:99:774,0,642 0/0:57,0:57:99:0,165,2024 0/0:66,2:68:99:0,159,2538 0/0:54,0:54:99:0,156,1889 +chr9 101829092 . A T 77.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.300;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.2320;MLEAC=2;MLEAF=0.250;MQ=35.32;MQ0=0;MQRankSum=-3.113;QD=2.50;ReadPosRankSum=0.617;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:24:0,24,335 0/0:14,1:15:4:0,4,325 0/1:14,3:17:54:54,0,359 0/1:11,3:14:64:64,0,214 +chr9 102067499 . T G 156.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.508;DP=126;Dels=0.01;FS=17.033;HaplotypeScore=3.4647;MLEAC=4;MLEAF=0.500;MQ=29.79;MQ0=0;MQRankSum=2.727;QD=1.24;ReadPosRankSum=-0.680;SB=-1.093e+00 GT:AD:DP:GQ:PL 0/1:32,2:34:11:11,0,557 0/1:27,2:29:6:6,0,480 0/1:30,4:34:62:62,0,493 0/1:22,6:28:99:119,0,262 +chr9 102068058 rs184437 A G 831.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.720;DB;DP=177;Dels=0.00;FS=2.754;HaplotypeScore=2.9548;MLEAC=4;MLEAF=0.500;MQ=18.12;MQ0=0;MQRankSum=1.604;QD=6.65;ReadPosRankSum=0.648;SB=-3.937e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:57:545,57,0 0/0:52,0:52:45:0,45,490 0/1:29,25:54:99:271,0,122 0/1:25,7:32:64:64,0,162 +chr9 104071364 rs78421496 G T 153.29 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.319;DB;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.2479;MLEAC=1;MLEAF=0.125;MQ=34.54;MQ0=0;MQRankSum=-0.284;QD=10.95;ReadPosRankSum=0.918;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:36:0,36,440 0/1:8,6:14:99:189,0,197 0/0:18,0:18:42:0,42,521 0/0:2,0:2:6:0,6,65 +chr9 104432514 . A C 113.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-6.071;DP=265;Dels=0.00;FS=88.393;HaplotypeScore=16.5922;MLEAC=2;MLEAF=0.250;MQ=32.48;MQ0=0;MQRankSum=-7.041;QD=0.81;ReadPosRankSum=5.117;SB=-1.522e+00 GT:AD:DP:GQ:PL 0/0:64,7:71:37:0,37,1880 0/1:56,12:68:97:97,0,1449 0/1:61,11:72:57:57,0,1614 0/0:46,8:54:7:0,7,1345 +chr9 104433347 rs13284303 G A 1509.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.505;DB;DP=183;Dels=0.01;FS=2.609;HaplotypeScore=5.1719;MLEAC=3;MLEAF=0.375;MQ=41.18;MQ0=0;MQRankSum=-4.837;QD=11.98;ReadPosRankSum=0.037;SB=-4.160e+02 GT:AD:DP:GQ:PL 0/1:23,15:38:99:476,0,819 0/0:57,0:57:99:0,169,2301 0/1:26,19:45:99:618,0,918 0/1:26,16:42:99:459,0,904 +chr9 104449538 . C A 237.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.360;DP=65;Dels=0.03;FS=0.000;HaplotypeScore=7.0442;MLEAC=4;MLEAF=0.500;MQ=26.16;MQ0=0;MQRankSum=-1.230;QD=3.66;ReadPosRankSum=0.708;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:29:29,0,191 0/1:5,9:15:99:167,0,114 0/1:19,3:23:57:57,0,216 0/1:5,2:7:27:27,0,55 +chr9 107515213 . C T 114.74 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.571;DP=102;Dels=0.01;FS=63.839;HaplotypeScore=1.9472;MLEAC=4;MLEAF=0.500;MQ=23.86;MQ0=0;MQRankSum=1.238;QD=1.57;ReadPosRankSum=-0.801;SB=-2.159e+00 GT:AD:DP:GQ:PL 0/1:28,4:32:76:76,0,336 0/0:26,2:28:1:0,1,358 0/1:23,4:27:58:58,0,363 0/1:12,2:14:21:21,0,179 +chr9 107546545 . G C 553.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.532;DP=122;Dels=0.00;FS=9.915;HaplotypeScore=6.9802;MLEAC=3;MLEAF=0.375;MQ=33.90;MQ0=0;MQRankSum=-2.525;QD=7.01;ReadPosRankSum=2.842;SB=0.181 GT:AD:DP:GQ:PL 0/1:24,13:37:99:313,0,495 0/1:21,6:27:99:124,0,319 0/0:41,2:43:14:0,14,812 0/1:10,5:15:99:160,0,105 +chr9 107549216 . G T 125.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.395;DP=207;Dels=0.01;FS=16.544;HaplotypeScore=4.1892;MLEAC=2;MLEAF=0.250;MQ=39.17;MQ0=0;MQRankSum=-2.467;QD=1.44;ReadPosRankSum=-3.677;SB=-1.174e-02 GT:AD:DP:GQ:PL 0/0:52,1:54:93:0,93,1478 0/1:46,6:52:66:66,0,1280 0/0:64,2:66:91:0,91,1911 0/1:26,5:33:99:101,0,627 +chr9 107568664 . A C 158.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.960;DP=67;Dels=0.00;FS=41.408;HaplotypeScore=1.9164;MLEAC=4;MLEAF=0.500;MQ=28.66;MQ0=0;MQRankSum=0.778;QD=3.16;ReadPosRankSum=1.103;SB=-4.750e+00 GT:AD:DP:GQ:PL 0/1:11,3:14:76:76,0,124 0/1:16,4:20:83:83,0,276 0/0:16,1:17:0:0,0,245 0/1:14,2:16:39:39,0,220 +chr9 107580991 . G T 201.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.159;DP=150;Dels=0.01;FS=76.012;HaplotypeScore=9.5760;MLEAC=3;MLEAF=0.375;MQ=32.56;MQ0=0;MQRankSum=-3.797;QD=1.82;ReadPosRankSum=0.700;SB=-1.154e+00 GT:AD:DP:GQ:PL 0/1:27,6:33:99:114,0,673 0/1:38,4:42:10:10,0,950 0/1:28,7:35:99:119,0,723 0/0:36,3:39:5:0,5,851 +chr9 107582311 . C A 1269.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.539;DP=253;Dels=0.00;FS=148.139;HaplotypeScore=3.6950;MLEAC=4;MLEAF=0.500;MQ=35.55;MQ0=0;MQRankSum=-1.530;QD=5.02;ReadPosRankSum=2.457;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:51,16:67:99:425,0,1113 0/1:48,10:58:99:246,0,1255 0/1:60,12:72:99:275,0,1532 0/1:42,14:56:99:366,0,1017 +chr9 109690141 . G C 317.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.795;DP=443;Dels=0.00;FS=41.535;HaplotypeScore=1.9835;MLEAC=2;MLEAF=0.250;MQ=38.28;MQ0=0;MQRankSum=-2.305;QD=1.51;ReadPosRankSum=-4.399;SB=-1.120e-02 GT:AD:DP:GQ:PL 0/1:95,17:112:99:243,0,2710 0/0:107,6:113:83:0,83,2903 0/0:116,4:120:99:0,103,2874 0/1:88,10:98:99:116,0,1982 +chr9 109697876 . A C 483.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.547;DP=89;Dels=0.04;FS=67.556;HaplotypeScore=14.7044;MLEAC=4;MLEAF=0.500;MQ=25.97;MQ0=0;MQRankSum=1.091;QD=5.43;ReadPosRankSum=0.623;SB=0.627 GT:AD:DP:GQ:PL 0/1:19,5:24:99:127,0,241 0/1:15,6:22:99:124,0,217 0/1:14,7:21:61:138,0,61 0/1:10,8:18:99:137,0,113 +chr9 109734598 . C T 115.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.557;DP=55;Dels=0.04;FS=7.164;HaplotypeScore=18.2213;MLEAC=4;MLEAF=0.500;MQ=19.05;MQ0=0;MQRankSum=-1.557;QD=2.10;ReadPosRankSum=2.741;SB=0.157 GT:AD:DP:GQ:PL 0/1:12,6:18:39:56,0,39 0/1:7,2:10:21:21,0,79 0/1:8,6:14:17:65,0,17 0/1:8,2:11:16:16,0,25 +chr9 111625933 . C T 39.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.902;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.9468;MLEAC=2;MLEAF=0.250;MQ=24.77;MQ0=0;MQRankSum=-1.221;QD=1.78;ReadPosRankSum=-1.261;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,1:14:21:0,21,250 0/1:7,1:10:21:21,0,64 0/0:13,1:14:7:0,7,277 0/1:9,3:12:59:59,0,149 +chr9 111670707 rs838824 T C 2200.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.680;DB;DP=73;Dels=0.00;FS=11.139;HaplotypeScore=1.0914;MLEAC=8;MLEAF=1.00;MQ=34.43;MQ0=0;MQRankSum=2.203;QD=30.15;ReadPosRankSum=-0.135;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,19:23:57:716,57,0 1/1:1,17:18:51:665,51,0 1/1:5,16:21:48:571,48,0 1/1:3,8:11:24:288,24,0 +chr9 111808437 rs7041716 C A 182.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.601;DB;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7477;MLEAC=1;MLEAF=0.125;MQ=33.97;MQ0=0;MQRankSum=-2.623;QD=7.62;ReadPosRankSum=-0.093;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:31,0:31:90:0,90,1171 0/1:14,10:24:99:219,0,388 0/0:19,0:19:48:0,48,633 0/0:20,0:20:60:0,60,684 +chr9 111970046 rs7874957 A T 287.07 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.927;DB;DP=13;Dels=0.00;FS=21.553;HaplotypeScore=0.2492;MLEAC=7;MLEAF=0.875;MQ=32.72;MQ0=0;MQRankSum=2.927;QD=23.92;ReadPosRankSum=0.817;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:12:163,12,0 0/0:1,0:1:3:0,3,31 1/1:3,3:6:9:126,9,0 1/1:0,1:1:3:42,3,0 +chr9 112005872 . G C 31.35 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.563;DP=93;Dels=0.02;FS=0.000;HaplotypeScore=6.9249;MLEAC=2;MLEAF=0.250;MQ=30.16;MQ0=0;MQRankSum=-1.521;QD=0.63;ReadPosRankSum=-0.744;SB=-2.496e+00 GT:AD:DP:GQ:PL 0/0:17,2:19:24:0,24,324 0/1:24,2:26:4:4,0,550 0/0:23,0:23:54:0,54,681 0/1:18,5:23:65:65,0,201 +chr9 112899702 . T G 309.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.624;DP=152;Dels=0.01;FS=148.764;HaplotypeScore=13.0987;MLEAC=4;MLEAF=0.500;MQ=27.33;MQ0=0;MQRankSum=-1.744;QD=2.04;ReadPosRankSum=2.076;SB=0.164 GT:AD:DP:GQ:PL 0/1:27,4:31:58:58,0,604 0/1:29,9:38:99:122,0,549 0/1:35,8:43:99:116,0,619 0/1:30,8:38:56:56,0,542 +chr9 113099991 rs76222661 T C 47.31 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.826;DB;DP=70;Dels=0.00;FS=2.350;HaplotypeScore=0.3670;MLEAC=3;MLEAF=0.375;MQ=31.64;MQ0=0;MQRankSum=1.064;QD=0.97;ReadPosRankSum=-0.644;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,3:17:59:59,0,303 0/0:20,1:21:6:0,6,343 0/1:23,2:25:15:15,0,309 0/1:6,1:7:15:15,0,54 +chr9 113137562 rs138259328 TTCTGAG T 1323.07 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.087;DB;DP=32;FS=0.000;HaplotypeScore=2.3563;MLEAC=6;MLEAF=0.750;MQ=30.62;MQ0=0;MQRankSum=-2.126;QD=41.35;ReadPosRankSum=1.369;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:5,4:10:99:420,0,331 0/1:6,2:7:99:161,0,340 1/1:5,3:6:15:396,15,0 1/1:3,3:5:15:401,15,0 +chr9 113151713 rs2296779 T C 161.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.834;DB;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.0366;MLEAC=1;MLEAF=0.125;MQ=32.68;MQ0=0;MQRankSum=0.966;QD=7.36;ReadPosRankSum=1.085;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:32,0:32:90:0,90,1059 0/1:15,7:22:99:198,0,442 0/0:29,0:29:87:0,87,965 0/0:22,0:22:60:0,60,709 +chr9 113191620 . G T 43.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.373;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.1538;MLEAC=1;MLEAF=0.125;MQ=33.10;MQ0=0;MQRankSum=-3.297;QD=2.44;ReadPosRankSum=-1.543;SB=-1.098e-02 GT:AD:DP:GQ:PL 0/0:52,3:55:42:0,42,1309 0/0:57,3:60:60:0,60,1366 0/0:44,2:46:41:0,41,967 0/1:14,4:18:80:80,0,323 +chr9 114154120 . A C 182.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.793;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=8.4406;MLEAC=4;MLEAF=0.500;MQ=29.07;MQ0=0;MQRankSum=-1.668;QD=1.02;ReadPosRankSum=1.091;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:48,8:56:99:106,0,729 0/1:47,6:53:70:70,0,793 0/1:43,7:51:39:39,0,568 0/1:14,4:18:9:9,0,278 +chr9 114176890 . C A 43.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.677;DP=198;Dels=0.00;FS=20.499;HaplotypeScore=9.8195;MLEAC=2;MLEAF=0.250;MQ=31.55;MQ0=0;MQRankSum=-1.516;QD=0.50;ReadPosRankSum=0.060;SB=-2.034e+00 GT:AD:DP:GQ:PL 0/1:43,4:47:64:64,0,661 0/0:47,2:50:17:0,17,729 0/0:59,2:61:50:0,50,1119 0/1:36,3:40:21:21,0,612 +chr9 114303963 . G T 48.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.260;DP=141;Dels=0.00;FS=2.216;HaplotypeScore=0.7412;MLEAC=3;MLEAF=0.375;MQ=34.73;MQ0=0;MQRankSum=-3.714;QD=0.46;ReadPosRankSum=1.282;SB=9.055e-03 GT:AD:DP:GQ:PL 0/1:38,5:43:32:32,0,1095 0/0:34,2:36:27:0,27,1097 0/1:32,4:36:30:30,0,788 0/1:23,3:26:30:30,0,530 +chr9 114804116 . G T 192.45 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.488;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3448;MLEAC=4;MLEAF=0.500;MQ=30.50;MQ0=0;MQRankSum=0.217;QD=2.44;ReadPosRankSum=1.355;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,6:19:99:143,0,117 0/1:16,1:17:7:7,0,272 0/1:19,1:20:13:13,0,137 0/1:20,3:23:71:71,0,160 +chr9 114986021 rs139459517 C CAGAA 1490.04 . AC=5;AF=0.625;AN=8;BaseQRankSum=-3.525;DB;DP=45;FS=0.000;HaplotypeScore=18.8334;MLEAC=5;MLEAF=0.625;MQ=26.00;MQ0=0;MQRankSum=2.625;QD=33.11;ReadPosRankSum=0.225;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:6,9:14:24:523,0,24 0/1:2,12:12:1:671,0,1 0/1:2,6:8:7:262,0,7 1/1:0,1:2:6:84,6,0 +chr9 115422115 . C G 47.25 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.162;DP=80;Dels=0.00;FS=25.080;HaplotypeScore=3.5561;MLEAC=1;MLEAF=0.125;MQ=31.08;MQ0=0;MQRankSum=-0.054;QD=2.36;ReadPosRankSum=-0.554;SB=-2.786e+00 GT:AD:DP:GQ:PL 0/0:17,0:17:18:0,18,234 0/0:19,1:20:7:0,7,320 0/0:23,0:23:33:0,33,429 0/1:17,3:20:83:83,0,147 +chr9 116045828 . T C 57.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.415;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.2467;MLEAC=1;MLEAF=0.125;MQ=36.24;MQ0=0;MQRankSum=-1.178;QD=1.45;ReadPosRankSum=2.513;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:37,1:38:73:0,73,1184 0/0:38,4:42:39:0,39,1225 0/0:31,1:32:31:0,31,779 0/1:34,6:40:94:94,0,914 +chr9 116122875 . A C 70.74 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.674;DP=47;Dels=0.00;FS=32.925;HaplotypeScore=0.5116;MLEAC=3;MLEAF=0.375;MQ=37.43;MQ0=0;MQRankSum=-2.448;QD=1.77;ReadPosRankSum=1.619;SB=-3.306e-01 GT:AD:DP:GQ:PL 0/1:8,4:12:99:101,0,230 0/1:11,1:12:3:3,0,227 0/1:13,2:16:5:5,0,350 0/0:7,0:7:15:0,15,216 +chr9 116794938 . C A 367.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.526;DP=194;Dels=0.03;FS=89.011;HaplotypeScore=52.7101;MLEAC=4;MLEAF=0.500;MQ=23.45;MQ0=0;MQRankSum=-0.008;QD=1.89;ReadPosRankSum=1.372;SB=-4.823e-02 GT:AD:DP:GQ:PL 0/1:31,11:42:99:238,0,354 0/1:41,9:50:99:114,0,449 0/1:44,8:52:38:38,0,364 0/1:41,4:45:20:20,0,414 +chr9 116859489 . T A 53.30 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.380;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=5.5310;MLEAC=4;MLEAF=0.667;MQ=20.79;MQ0=0;MQRankSum=0.529;QD=2.67;ReadPosRankSum=0.380;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:7,1:8:3:34,3,0 0/1:4,2:6:20:20,0,64 ./. 0/1:3,2:6:38:38,0,44 +chr9 117027768 . T C 206.78 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.210;DP=60;Dels=0.00;FS=8.678;HaplotypeScore=1.7223;MLEAC=4;MLEAF=0.500;MQ=24.51;MQ0=0;MQRankSum=0.090;QD=3.45;ReadPosRankSum=-1.553;SB=-2.224e+00 GT:AD:DP:GQ:PL 0/1:15,5:21:59:106,0,59 0/1:7,5:12:11:69,0,11 0/1:16,2:18:23:23,0,141 0/1:6,3:9:25:51,0,25 +chr9 117046170 rs1565502 G A 180.34 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.338;DB;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.4338;MLEAC=5;MLEAF=0.625;MQ=36.86;MQ0=0;MQRankSum=-0.972;QD=9.02;ReadPosRankSum=0.296;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:49:49,0,96 0/1:6,2:8:57:57,0,218 1/1:0,2:2:6:83,6,0 0/1:3,1:4:35:35,0,76 +chr9 117053169 . C T 31.02 . AC=4;AF=1.00;AN=4;DP=6;Dels=0.00;FS=4.771;HaplotypeScore=0.4735;MLEAC=4;MLEAF=1.00;MQ=20.42;MQ0=0;QD=7.75;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:37,3,0 1/1:1,1:2:3:27,3,0 ./. ./. +chr9 117458547 . G C 64.42 . AC=3;AF=0.500;AN=6;BaseQRankSum=-2.668;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=2.9460;MLEAC=3;MLEAF=0.500;MQ=14.20;MQ0=0;MQRankSum=3.239;QD=0.60;ReadPosRankSum=1.493;SB=-1.293e-02 GT:AD:DP:GQ:PL ./. 0/1:42,2:44:33:33,0,103 0/1:37,2:39:15:53,0,15 0/1:22,1:23:17:17,0,96 +chr9 117568047 . T A 30.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.931;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.2294;MLEAC=2;MLEAF=0.250;MQ=32.65;MQ0=0;MQRankSum=0.512;QD=1.40;ReadPosRankSum=-0.931;SB=-9.027e-03 GT:AD:DP:GQ:PL 0/1:11,1:12:18:18,0,174 0/0:15,0:15:39:0,39,484 0/0:14,0:14:30:0,30,339 0/1:8,2:10:54:54,0,56 +chr9 117849314 rs2992147 T C 313.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.518;DB;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=2.5914;MLEAC=1;MLEAF=0.125;MQ=35.68;MQ0=0;MQRankSum=0.433;QD=7.66;ReadPosRankSum=-0.839;SB=-1.680e+02 GT:AD:DP:GQ:PL 0/1:29,12:41:99:350,0,924 0/0:43,0:43:99:0,117,1446 0/0:51,0:51:99:0,132,1591 0/0:48,0:48:99:0,135,1625 +chr9 119187788 . A T 117.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.141;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3982;MLEAC=4;MLEAF=0.500;MQ=28.69;MQ0=0;MQRankSum=-0.535;QD=1.73;ReadPosRankSum=1.162;SB=-5.883e-01 GT:AD:DP:GQ:PL 0/1:16,3:19:31:31,0,385 0/1:16,1:17:4:4,0,200 0/1:16,3:19:54:54,0,253 0/1:10,3:13:70:70,0,141 +chr9 119413901 . G T 47.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.294;DP=124;Dels=0.00;FS=50.150;HaplotypeScore=3.1941;MLEAC=4;MLEAF=0.500;MQ=31.10;MQ0=0;MQRankSum=0.534;QD=0.39;ReadPosRankSum=0.618;SB=-1.282e+00 GT:AD:DP:GQ:PL 0/1:30,3:33:4:4,0,766 0/1:21,3:24:25:25,0,472 0/1:34,4:38:34:34,0,638 0/1:26,3:29:26:26,0,442 +chr9 119461264 . G T 41.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.990;DP=267;Dels=0.00;FS=45.741;HaplotypeScore=2.7109;MLEAC=1;MLEAF=0.125;MQ=39.84;MQ0=0;MQRankSum=-1.416;QD=0.33;ReadPosRankSum=0.185;SB=-4.813e+00 GT:AD:DP:GQ:PL 0/0:62,3:65:21:0,21,1585 0/1:64,4:68:2:2,0,1634 0/0:72,2:74:90:0,90,1835 0/1:55,5:60:76:76,0,1243 +chr9 119738934 . A G 66.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.424;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9656;MLEAC=2;MLEAF=0.250;MQ=31.99;MQ0=0;MQRankSum=1.085;QD=1.04;ReadPosRankSum=-0.713;SB=-1.045e-02 GT:AD:DP:GQ:PL 0/0:28,0:28:33:0,33,387 0/1:24,3:27:50:50,0,475 0/1:34,3:37:58:58,0,299 0/0:25,0:25:36:0,36,415 +chr9 121526451 . T G 126.04 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.417;DP=28;Dels=0.00;FS=9.368;HaplotypeScore=1.4417;MLEAC=4;MLEAF=0.500;MQ=28.09;MQ0=0;MQRankSum=-0.472;QD=6.30;ReadPosRankSum=-0.157;SB=0.716 GT:AD:DP:GQ:PL 1/1:1,4:5:9:90,9,0 0/0:7,1:8:9:0,9,125 0/1:4,2:6:14:45,0,14 0/1:7,2:9:37:37,0,135 +chr9 121970957 . G C 277.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.827;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4600;MLEAC=4;MLEAF=0.500;MQ=31.51;MQ0=0;MQRankSum=0.143;QD=4.79;ReadPosRankSum=-0.739;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:5:5,0,193 0/1:6,5:11:99:121,0,133 0/1:15,3:18:57:57,0,196 0/1:9,5:14:86:136,0,86 +chr9 123291036 rs4836822 C G 1150.34 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.447;DB;DP=57;Dels=0.00;FS=15.916;HaplotypeScore=1.4384;MLEAC=7;MLEAF=0.875;MQ=31.54;MQ0=0;MQRankSum=3.551;QD=20.18;ReadPosRankSum=1.992;SB=8.98 GT:AD:DP:GQ:PL 1/1:7,16:23:48:607,48,0 1/1:6,10:16:24:312,24,0 1/1:7,6:14:15:190,15,0 1/1:2,2:4:6:80,6,0 +chr9 123367799 . A T 491.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.017;DP=135;Dels=0.00;FS=54.963;HaplotypeScore=7.6065;MLEAC=4;MLEAF=0.500;MQ=31.73;MQ0=0;MQRankSum=0.117;QD=3.64;ReadPosRankSum=1.072;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:24,8:32:99:225,0,254 0/1:28,6:34:99:152,0,250 0/1:42,5:49:99:101,0,500 0/1:16,3:20:56:56,0,234 +chr9 123632655 . G A 184.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.627;DP=88;Dels=0.02;FS=0.000;HaplotypeScore=9.3751;MLEAC=4;MLEAF=0.500;MQ=22.93;MQ0=0;MQRankSum=2.235;QD=2.10;ReadPosRankSum=-0.024;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,2:22:19:19,0,209 0/1:16,4:20:72:73,0,72 0/1:18,3:21:65:65,0,141 0/1:18,5:23:70:70,0,105 +chr9 123676447 . A C 34.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.251;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.6615;MLEAC=1;MLEAF=0.125;MQ=24.79;MQ0=0;MQRankSum=0.256;QD=1.62;ReadPosRankSum=1.884;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,1:20:27:0,27,275 0/0:15,0:15:18:0,18,224 0/0:18,0:18:21:0,21,223 0/1:18,3:21:66:70,0,66 +chr9 123724902 . G C 32.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.083;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=33.5138;MLEAC=3;MLEAF=0.375;MQ=20.66;MQ0=0;MQRankSum=-1.248;QD=0.61;ReadPosRankSum=0.897;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,5:20:15:0,15,161 0/1:19,3:22:8:8,0,156 0/1:18,5:23:52:52,0,177 0/1:7,1:8:14:14,0,85 +chr9 123753600 rs41311867 G T 1849.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.037;DB;DP=147;Dels=0.00;FS=8.892;HaplotypeScore=1.2275;MLEAC=4;MLEAF=0.500;MQ=34.62;MQ0=0;MQRankSum=-4.931;QD=12.58;ReadPosRankSum=2.077;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,19:38:99:588,0,600 0/1:26,17:43:99:523,0,760 0/1:26,24:50:99:665,0,796 0/1:12,4:16:99:116,0,313 +chr9 123880570 rs41273412 T C 1479.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.136;DB;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.0610;MLEAC=4;MLEAF=0.500;MQ=32.76;MQ0=0;MQRankSum=-1.864;QD=12.76;ReadPosRankSum=2.652;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,13:37:99:376,0,666 0/1:13,20:33:99:546,0,393 0/1:20,16:36:99:471,0,443 0/1:5,5:10:60:129,0,60 +chr9 124076226 . G T 109.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.222;DP=114;Dels=0.00;FS=67.032;HaplotypeScore=5.3265;MLEAC=4;MLEAF=0.500;MQ=32.26;MQ0=0;MQRankSum=-0.235;QD=1.15;ReadPosRankSum=0.433;SB=-1.659e+00 GT:AD:DP:GQ:PL 0/1:32,4:36:59:59,0,715 0/1:27,4:31:33:33,0,666 0/1:24,4:28:58:58,0,568 0/0:16,3:19:2:0,2,333 +chr9 124089668 . C T 86.07 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.231;DP=53;Dels=0.00;FS=2.479;HaplotypeScore=4.7740;MLEAC=3;MLEAF=0.375;MQ=25.84;MQ0=0;MQRankSum=1.345;QD=2.10;ReadPosRankSum=-2.216;SB=6.00 GT:AD:DP:GQ:PL 0/1:12,3:15:82:82,0,90 0/1:13,2:15:29:29,0,120 0/1:10,1:11:18:18,0,114 0/0:11,0:12:15:0,15,183 +chr9 124089669 . A G 74.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.017;DP=55;Dels=0.00;FS=2.397;HaplotypeScore=4.7820;MLEAC=3;MLEAF=0.375;MQ=25.75;MQ0=0;MQRankSum=1.285;QD=1.87;ReadPosRankSum=0.985;SB=-9.885e-01 GT:AD:DP:GQ:PL 0/0:15,0:15:15:0,15,146 0/1:13,3:16:68:68,0,70 0/1:9,2:11:43:43,0,131 0/1:12,1:13:5:5,0,192 +chr9 124222228 rs10985252 C A 193.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.691;DB;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.3943;MLEAC=1;MLEAF=0.125;MQ=37.41;MQ0=0;MQRankSum=-2.072;QD=17.64;ReadPosRankSum=0.046;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:69:0,69,915 0/1:4,7:11:93:230,0,93 0/0:13,0:13:36:0,36,469 0/0:15,0:15:39:0,39,514 +chr9 124282707 rs10985293 C T 32.69 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.411;DB;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.8190;MLEAC=1;MLEAF=0.125;MQ=25.20;MQ0=0;MQRankSum=0.158;QD=2.72;ReadPosRankSum=0.158;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:12:0,12,155 0/1:8,4:12:66:68,0,66 0/0:7,0:7:18:0,18,227 0/0:6,0:6:3:0,3,41 +chr9 124545868 . T A 30.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.879;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.2754;MLEAC=2;MLEAF=0.250;MQ=27.99;MQ0=0;MQRankSum=-4.251;QD=0.51;ReadPosRankSum=2.212;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,4:31:16:16,0,526 0/0:30,3:33:31:0,31,547 0/0:38,1:39:75:0,75,858 0/1:23,7:30:56:56,0,322 +chr9 124751312 rs55693486 C T 81.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.672;DB;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=2.2253;MLEAC=1;MLEAF=0.125;MQ=32.98;MQ0=0;MQRankSum=-1.416;QD=4.10;ReadPosRankSum=0.155;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:42:0,42,506 0/1:14,5:19:99:118,0,303 0/0:21,0:21:60:0,60,774 0/0:25,0:25:72:0,72,868 +chr9 125033161 . G C 46.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.533;DP=244;Dels=0.00;FS=44.323;HaplotypeScore=7.1202;MLEAC=3;MLEAF=0.375;MQ=19.62;MQ0=0;MQRankSum=2.660;QD=0.27;ReadPosRankSum=2.448;SB=0.334 GT:AD:DP:GQ:PL 0/0:68,0:68:57:0,57,642 0/1:62,4:66:31:31,0,435 0/1:67,4:72:30:30,0,393 0/1:33,5:38:29:29,0,134 +chr9 125047465 . G T 117.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.433;DP=222;Dels=0.00;FS=8.672;HaplotypeScore=6.6168;MLEAC=2;MLEAF=0.250;MQ=28.82;MQ0=0;MQRankSum=-0.070;QD=1.09;ReadPosRankSum=1.218;SB=2.26 GT:AD:DP:GQ:PL 0/1:52,5:57:37:37,0,1038 0/1:44,7:51:99:122,0,686 0/0:55,4:59:15:0,15,1081 0/0:50,3:54:26:0,26,1067 +chr9 125047561 . C T 71.94 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.231;DP=141;Dels=0.03;FS=21.837;HaplotypeScore=34.0537;MLEAC=4;MLEAF=0.500;MQ=21.69;MQ0=0;MQRankSum=1.268;QD=0.51;ReadPosRankSum=0.688;SB=-3.265e-01 GT:AD:DP:GQ:PL 0/1:33,3:37:48:48,0,172 0/1:34,3:37:26:26,0,267 0/1:27,2:31:10:10,0,300 0/1:27,4:32:30:30,0,131 +chr9 125154881 . T G 76.54 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.887;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.4767;MLEAC=3;MLEAF=0.375;MQ=35.31;MQ0=0;MQRankSum=-0.203;QD=1.32;ReadPosRankSum=1.122;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,2:19:35:35,0,255 0/1:16,1:17:1:1,0,354 0/0:22,1:24:4:0,4,314 0/1:17,4:22:79:79,0,398 +chr9 126129904 rs10818812 C T 182.37 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.386;DB;DP=12;Dels=0.00;FS=7.368;HaplotypeScore=0.7887;MLEAC=5;MLEAF=0.833;MQ=27.56;MQ0=0;MQRankSum=0.731;QD=16.58;ReadPosRankSum=-0.731;SB=-3.269e+01 GT:AD:DP:GQ:PL 0/1:1,2:3:34:60,0,34 1/1:1,1:2:3:32,3,0 ./. 1/1:2,4:6:12:130,12,0 +chr9 127619924 . G C 37.87 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.429;DP=91;Dels=0.02;FS=4.636;HaplotypeScore=2.2944;MLEAC=2;MLEAF=0.250;MQ=36.49;MQ0=0;MQRankSum=-2.913;QD=0.90;ReadPosRankSum=-1.160;SB=-9.534e-01 GT:AD:DP:GQ:PL 0/0:23,1:24:30:0,30,663 0/1:16,2:18:7:7,0,523 0/0:22,1:24:22:0,22,521 0/1:19,4:23:70:70,0,394 +chr9 127623600 . A C 43.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.236;DP=55;Dels=0.04;FS=0.000;HaplotypeScore=6.3595;MLEAC=4;MLEAF=0.500;MQ=35.45;MQ0=0;MQRankSum=-3.892;QD=0.78;ReadPosRankSum=0.092;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:32:32,0,279 0/1:13,1:14:5:5,0,318 0/1:9,3:13:38:38,0,140 0/1:9,2:12:9:9,0,225 +chr9 127662709 . A G 129.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.927;DP=88;Dels=0.01;FS=10.500;HaplotypeScore=24.7702;MLEAC=4;MLEAF=0.500;MQ=25.18;MQ0=0;MQRankSum=-1.003;QD=2.05;ReadPosRankSum=2.958;SB=-1.819e+00 GT:AD:DP:GQ:PL 0/1:18,3:21:57:57,0,173 0/0:24,1:25:0:0,0,192 0/1:15,3:18:47:47,0,118 0/1:20,3:23:65:65,0,185 +chr9 127789210 . T G 46.74 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.450;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=10.2986;MLEAC=5;MLEAF=0.625;MQ=26.37;MQ0=0;MQRankSum=0.750;QD=0.97;ReadPosRankSum=0.150;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:14:14,0,110 0/1:15,1:17:21:21,0,53 0/1:13,1:15:25:25,0,83 1/1:2,1:3:3:29,3,0 +chr9 127995962 . C A 63.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.729;DP=166;Dels=0.02;FS=50.353;HaplotypeScore=14.7115;MLEAC=4;MLEAF=0.500;MQ=29.45;MQ0=0;MQRankSum=-6.787;QD=0.38;ReadPosRankSum=0.790;SB=-1.144e+00 GT:AD:DP:GQ:PL 0/1:36,12:48:5:5,0,838 0/1:33,9:42:16:16,0,909 0/1:35,11:46:60:60,0,888 0/1:20,6:26:24:24,0,275 +chr9 128069703 rs13299973 C A 684.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.088;DB;DP=80;Dels=0.00;FS=4.021;HaplotypeScore=2.3779;MLEAC=3;MLEAF=0.375;MQ=38.82;MQ0=0;MQRankSum=-0.975;QD=12.68;ReadPosRankSum=-0.877;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:10,9:19:99:306,0,267 0/0:26,0:26:69:0,69,873 0/1:11,9:20:99:284,0,292 0/1:10,5:15:99:138,0,332 +chr9 128086017 . A C 73.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.627;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.2245;MLEAC=2;MLEAF=0.250;MQ=32.33;MQ0=0;MQRankSum=1.537;QD=1.84;ReadPosRankSum=0.313;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:39:0,39,449 0/1:16,4:20:73:73,0,301 0/1:18,2:20:42:42,0,213 0/0:9,0:9:12:0,12,128 +chr9 128099612 . C T 121.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.409;DP=189;Dels=0.00;FS=35.775;HaplotypeScore=2.6707;MLEAC=3;MLEAF=0.375;MQ=32.72;MQ0=0;MQRankSum=-0.793;QD=0.88;ReadPosRankSum=0.733;SB=-1.567e+00 GT:AD:DP:GQ:PL 0/1:36,3:39:36:36,0,541 0/1:48,6:54:99:114,0,794 0/0:49,2:51:3:0,3,690 0/1:40,3:45:12:12,0,606 +chr9 128246786 rs2070113 G A 1767.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.506;DB;DP=147;Dels=0.00;FS=5.456;HaplotypeScore=2.4605;MLEAC=4;MLEAF=0.500;MQ=33.88;MQ0=0;MQRankSum=2.352;QD=17.50;ReadPosRankSum=0.078;SB=-4.950e+02 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,126,1432 1/1:6,27:33:39:964,39,0 0/1:26,17:43:99:536,0,710 0/1:15,10:25:99:316,0,340 +chr9 128692159 . C A 85.15 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.518;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.1190;MLEAC=3;MLEAF=0.375;MQ=34.75;MQ0=0;MQRankSum=0.373;QD=1.22;ReadPosRankSum=2.298;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,4:28:79:79,0,262 0/1:26,3:29:36:36,0,305 0/0:28,1:29:21:0,21,442 0/1:11,1:13:13:13,0,178 +chr9 128723221 . G GA 137.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.095;DP=37;FS=0.000;HaplotypeScore=19.4008;MLEAC=3;MLEAF=0.375;MQ=33.79;MQ0=0;MQRankSum=-2.764;QD=4.90;RPA=1,2;RU=A;ReadPosRankSum=1.630;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:4,4:7:99:115,0,107 0/0:8,0:7:18:0,18,255 0/1:12,1:14:6:6,0,381 0/1:4,2:6:67:67,0,151 +chr9 130119426 rs78563134 G A 330.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.809;DB;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=2.0672;MLEAC=3;MLEAF=0.375;MQ=30.75;MQ0=0;MQRankSum=-1.326;QD=6.13;ReadPosRankSum=0.769;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:99:173,0,305 0/0:22,0:22:48:0,48,579 0/1:14,5:19:49:49,0,335 0/1:12,6:18:99:152,0,324 +chr9 130169874 rs6635 A G 53.13 . AC=1;AF=0.167;AN=6;BaseQRankSum=-0.731;DB;DP=15;Dels=0.00;FS=3.090;HaplotypeScore=0.7208;MLEAC=1;MLEAF=0.167;MQ=30.13;MQ0=0;MQRankSum=-0.895;QD=7.59;ReadPosRankSum=0.296;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/0:3,0:3:6:0,6,86 0/1:4,3:7:32:87,0,32 0/0:2,0:2:6:0,6,85 +chr9 130191235 . C T 342.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.196;DP=67;Dels=0.03;FS=9.566;HaplotypeScore=2.5511;MLEAC=4;MLEAF=0.500;MQ=27.35;MQ0=0;MQRankSum=0.980;QD=5.10;ReadPosRankSum=2.601;SB=13.96 GT:AD:DP:GQ:PL 0/1:14,4:19:7:105,0,7 0/1:12,7:19:99:128,0,109 0/1:16,4:20:94:94,0,183 0/1:3,4:7:26:57,0,26 +chr9 130198100 rs7853047 A G 1390.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.277;DB;DP=102;Dels=0.00;FS=10.795;HaplotypeScore=6.2187;MLEAC=5;MLEAF=0.625;MQ=32.77;MQ0=0;MQRankSum=-1.000;QD=13.63;ReadPosRankSum=2.764;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,12:15:36:433,36,0 0/1:15,11:26:99:259,0,278 0/1:20,16:36:99:433,0,532 0/1:15,10:25:99:311,0,219 +chr9 130259618 rs2248822 A C 1749 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.799;DB;DP=66;Dels=0.00;FS=19.640;HaplotypeScore=2.1667;MLEAC=8;MLEAF=1.00;MQ=30.15;MQ0=0;MQRankSum=3.323;QD=26.50;ReadPosRankSum=0.163;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:3,15:18:42:478,42,0 1/1:3,11:14:33:351,33,0 1/1:1,12:13:36:438,36,0 1/1:5,15:21:19:521,19,0 +chr9 130444886 . A C 327.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.888;DP=45;Dels=0.00;FS=10.375;HaplotypeScore=8.6454;MLEAC=4;MLEAF=0.500;MQ=23.76;MQ0=0;MQRankSum=2.530;QD=7.28;ReadPosRankSum=-0.113;SB=-1.981e+00 GT:AD:DP:GQ:PL 0/1:6,5:11:65:140,0,65 0/1:8,5:13:19:83,0,19 0/1:6,4:10:15:53,0,15 0/1:8,3:11:13:94,0,13 +chr9 130476228 . C G 222.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.068;DP=100;Dels=0.01;FS=7.488;HaplotypeScore=6.0250;MLEAC=4;MLEAF=0.500;MQ=27.33;MQ0=0;MQRankSum=-0.517;QD=2.23;ReadPosRankSum=2.493;SB=-5.881e-01 GT:AD:DP:GQ:PL 0/1:19,3:22:51:51,0,257 0/1:18,6:24:41:41,0,224 0/1:23,7:30:99:168,0,164 0/1:21,2:23:4:4,0,242 +chr9 130524817 rs3962613 C T 861.38 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.668;DB;DP=45;Dels=0.00;FS=22.796;HaplotypeScore=0.7290;MLEAC=8;MLEAF=1.00;MQ=24.61;MQ0=0;MQRankSum=3.833;QD=19.14;ReadPosRankSum=-0.247;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,8:13:24:251,24,0 1/1:5,17:22:24:450,24,0 1/1:1,4:5:12:138,12,0 1/1:1,4:5:6:61,6,0 +chr9 130548900 . C A 102.54 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.380;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.2097;MLEAC=4;MLEAF=0.667;MQ=21.43;MQ0=0;MQRankSum=1.134;QD=6.41;ReadPosRankSum=0.135;SB=21.61 GT:AD:DP:GQ:PL 1/1:5,3:8:9:81,9,0 0/0:3,0:3:3:0,3,24 ./. 1/1:5,2:8:6:62,6,0 +chr9 130566489 . T C 129.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.230;DP=60;Dels=0.00;FS=4.911;HaplotypeScore=1.5802;MLEAC=4;MLEAF=0.500;MQ=32.31;MQ0=0;MQRankSum=0.068;QD=2.16;ReadPosRankSum=0.149;SB=-2.209e-01 GT:AD:DP:GQ:PL 0/1:14,2:16:32:32,0,358 0/1:11,1:12:11:11,0,234 0/1:17,2:19:24:24,0,248 0/1:9,4:13:99:105,0,151 +chr9 130670532 rs3818509 C T 312.64 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.143;DB;DP=17;Dels=0.00;FS=9.031;HaplotypeScore=1.9497;MLEAC=7;MLEAF=0.875;MQ=28.01;MQ0=0;MQRankSum=1.191;QD=18.39;ReadPosRankSum=-0.079;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:74,6,0 0/1:2,7:9:9:175,0,9 1/1:1,2:3:3:43,3,0 1/1:0,3:3:6:61,6,0 +chr9 130861043 . A C 525.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.831;DP=86;Dels=0.03;FS=0.000;HaplotypeScore=4.7819;MLEAC=4;MLEAF=0.500;MQ=28.37;MQ0=0;MQRankSum=-1.310;QD=6.11;ReadPosRankSum=-0.224;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,7:21:99:103,0,238 0/1:15,5:20:99:129,0,225 0/1:16,9:25:99:207,0,105 0/1:11,6:17:96:129,0,96 +chr9 130864608 . G C 32.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.759;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=4.3229;MLEAC=3;MLEAF=0.375;MQ=24.74;MQ0=0;MQRankSum=-2.462;QD=1.11;ReadPosRankSum=1.102;SB=0.277 GT:AD:DP:GQ:PL 0/1:10,2:12:17:17,0,123 0/1:6,3:9:25:25,0,61 0/0:16,1:17:12:0,12,341 0/1:5,2:7:33:33,0,104 +chr9 130868366 . G A 76.44 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.9283;MLEAC=2;MLEAF=0.250;MQ=28.62;MQ0=0;MQRankSum=-2.445;QD=1.50;ReadPosRankSum=1.344;SB=-1.548e-02 GT:AD:DP:GQ:PL 0/1:26,4:30:33:33,0,580 0/1:16,5:21:83:83,0,282 0/0:29,2:31:20:0,20,437 0/0:28,3:31:1:0,1,469 +chr9 130868769 . C A 425.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.604;DP=128;Dels=0.02;FS=34.305;HaplotypeScore=22.8313;MLEAC=4;MLEAF=0.500;MQ=27.04;MQ0=0;MQRankSum=-0.411;QD=3.32;ReadPosRankSum=0.676;SB=-7.012e+00 GT:AD:DP:GQ:PL 0/1:22,10:33:99:244,0,377 0/1:34,5:39:52:52,0,340 0/1:26,3:29:58:58,0,126 0/1:20,5:25:99:114,0,141 +chr9 130887587 . G T 582.84 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.132;DP=47;Dels=0.00;FS=18.677;HaplotypeScore=0.9808;MLEAC=4;MLEAF=0.500;MQ=26.58;MQ0=0;MQRankSum=1.710;QD=12.40;ReadPosRankSum=2.103;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,5:7:21:109,0,21 0/1:8,7:15:58:198,0,58 0/1:7,7:14:12:170,0,12 0/1:6,5:11:13:148,0,13 +chr9 130914170 rs11794980 C G 1746.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.991;DB;DP=131;Dels=0.00;FS=16.095;HaplotypeScore=6.4750;MLEAC=5;MLEAF=0.625;MQ=33.47;MQ0=0;MQRankSum=-1.810;QD=13.33;ReadPosRankSum=0.412;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:7,21:28:63:784,63,0 0/1:26,9:35:99:172,0,723 0/1:20,18:38:99:555,0,556 0/1:18,12:30:99:281,0,482 +chr9 130928919 . G T 79.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.421;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.9170;MLEAC=3;MLEAF=0.375;MQ=23.24;MQ0=0;MQRankSum=0.983;QD=3.61;ReadPosRankSum=2.201;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:17:17,0,48 0/0:9,0:9:12:0,12,117 0/1:3,2:5:13:50,0,13 0/1:7,2:9:14:55,0,14 +chr9 130940822 rs3892074 C T 3233.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.195;DB;DP=98;Dels=0.00;FS=6.326;HaplotypeScore=0.9665;MLEAC=8;MLEAF=1.00;MQ=33.47;MQ0=0;MQRankSum=1.362;QD=32.99;ReadPosRankSum=2.326;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:2,24:26:37:874,37,0 1/1:1,25:26:50:912,50,0 1/1:4,25:29:40:894,40,0 1/1:0,17:17:51:594,51,0 +chr9 130982564 . T A 77 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.301;DP=306;Dels=0.00;FS=25.230;HaplotypeScore=0.7411;MLEAC=1;MLEAF=0.125;MQ=34.92;MQ0=0;MQRankSum=-2.902;QD=0.88;ReadPosRankSum=0.229;SB=-4.785e+00 GT:AD:DP:GQ:PL 0/0:68,3:71:70:0,70,1808 0/0:59,4:63:33:0,33,1656 0/0:79,5:84:21:0,21,1910 0/1:78,10:88:99:113,0,1875 +chr9 131008767 . T G 130.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.668;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.2361;MLEAC=3;MLEAF=0.375;MQ=33.50;MQ0=0;MQRankSum=-1.790;QD=1.81;ReadPosRankSum=0.111;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:61:61,0,207 0/1:21,6:27:99:102,0,343 0/1:24,2:27:10:10,0,341 0/0:18,0:18:18:0,18,189 +chr9 131022416 . T G 248.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.785;DP=212;Dels=0.00;FS=121.667;HaplotypeScore=2.7820;MLEAC=3;MLEAF=0.375;MQ=22.48;MQ0=0;MQRankSum=4.414;QD=1.56;ReadPosRankSum=-1.371;SB=0.753 GT:AD:DP:GQ:PL 0/1:43,4:47:26:26,0,593 0/0:50,2:52:26:0,26,784 0/1:51,9:60:99:136,0,638 0/1:46,7:53:99:130,0,582 +chr9 131040874 rs56203622 T C 1377.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.327;DB;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=0.9925;MLEAC=4;MLEAF=0.500;MQ=36.61;MQ0=0;MQRankSum=-1.435;QD=19.40;ReadPosRankSum=0.023;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,102,1318 1/1:0,22:22:66:858,66,0 0/1:21,12:33:99:376,0,638 0/1:9,6:15:99:192,0,307 +chr9 131110892 rs2240953 G A 745.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.202;DB;DP=126;Dels=0.01;FS=12.095;HaplotypeScore=3.2567;MLEAC=3;MLEAF=0.375;MQ=34.00;MQ0=0;MQRankSum=-2.531;QD=8.20;ReadPosRankSum=2.436;SB=-9.601e+01 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,102,1268 0/1:20,7:27:99:131,0,594 0/1:20,13:33:99:354,0,507 0/1:18,12:30:99:304,0,485 +chr9 131245067 . G A 44.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.869;DP=54;Dels=0.02;FS=44.854;HaplotypeScore=2.4125;MLEAC=2;MLEAF=0.250;MQ=33.25;MQ0=0;MQRankSum=-0.574;QD=1.44;ReadPosRankSum=-0.405;SB=-3.287e+00 GT:AD:DP:GQ:PL 0/1:8,2:10:40:40,0,210 0/1:17,3:20:46:46,0,444 0/0:11,0:11:33:0,33,408 0/0:12,0:12:27:0,27,331 +chr9 131456828 . C T 42.90 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.577;DP=69;Dels=0.04;FS=0.000;HaplotypeScore=11.9795;MLEAC=5;MLEAF=0.625;MQ=22.78;MQ0=0;MQRankSum=-0.025;QD=0.62;ReadPosRankSum=1.682;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:11,1:12:3:23,3,0 0/1:18,1:19:12:12,0,126 0/1:17,2:19:36:36,0,50 0/1:15,1:16:14:14,0,82 +chr9 131495778 . C A 33.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.284;DP=41;Dels=0.00;FS=13.856;HaplotypeScore=6.3888;MLEAC=3;MLEAF=0.375;MQ=24.72;MQ0=0;MQRankSum=-0.640;QD=1.07;ReadPosRankSum=0.782;SB=0.192 GT:AD:DP:GQ:PL 0/0:8,0:10:6:0,6,69 0/1:13,2:15:36:36,0,199 0/1:4,1:5:14:14,0,51 0/1:9,2:11:25:25,0,38 +chr9 131554718 . G A 35.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.596;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.7451;MLEAC=2;MLEAF=0.250;MQ=20.22;MQ0=0;MQRankSum=2.463;QD=1.23;ReadPosRankSum=0.130;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:17:25,0,17 0/0:10,0:10:9:0,9,66 0/1:15,3:19:51:51,0,99 0/0:13,0:13:6:0,6,53 +chr9 131585069 rs2280843 A G 581.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.226;DB;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.2284;MLEAC=4;MLEAF=0.500;MQ=29.56;MQ0=0;MQRankSum=0.927;QD=11.40;ReadPosRankSum=0.203;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,2:7:57:57,0,113 0/1:7,5:13:99:133,0,193 0/1:7,10:17:99:318,0,148 0/1:9,5:14:99:116,0,126 +chr9 131588652 rs2997914 T C 2919.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.207;DB;DP=105;Dels=0.02;FS=0.000;HaplotypeScore=4.0875;MLEAC=8;MLEAF=1.00;MQ=31.34;MQ0=0;MQRankSum=2.192;QD=27.81;ReadPosRankSum=0.871;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:3,16:19:27:572,27,0 1/1:3,26:30:66:816,66,0 1/1:4,25:29:72:868,72,0 1/1:3,21:25:60:703,60,0 +chr9 131597947 . C G 59.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.852;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.4816;MLEAC=4;MLEAF=0.500;MQ=28.61;MQ0=0;MQRankSum=1.080;QD=1.27;ReadPosRankSum=-1.761;SB=-4.073e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:18:18,0,121 0/1:9,2:11:37:37,0,172 0/1:13,2:15:32:32,0,316 0/1:10,1:12:15:15,0,174 +chr9 131599008 rs2759009 C T 800.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.511;DB;DP=79;Dels=0.03;FS=14.295;HaplotypeScore=1.6470;MLEAC=4;MLEAF=0.500;MQ=32.13;MQ0=0;MQRankSum=-0.544;QD=10.13;ReadPosRankSum=-1.142;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:10,8:18:99:240,0,310 0/1:12,6:18:99:195,0,278 0/1:12,11:23:99:283,0,351 0/1:10,8:18:99:125,0,173 +chr9 131708447 . A C 57.96 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.753;DP=239;Dels=0.00;FS=34.841;HaplotypeScore=6.9491;MLEAC=1;MLEAF=0.125;MQ=39.47;MQ0=0;MQRankSum=-3.327;QD=0.95;ReadPosRankSum=0.361;SB=-9.183e+00 GT:AD:DP:GQ:PL 0/0:53,4:57:1:0,1,1202 0/0:59,1:61:99:0,108,1583 0/0:55,4:59:1:0,1,1415 0/1:54,7:61:92:92,0,1529 +chr9 131756819 . T G 45.18 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.165;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=1.1757;MLEAC=1;MLEAF=0.125;MQ=37.06;MQ0=0;MQRankSum=0.830;QD=1.74;ReadPosRankSum=-0.244;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:45,3:48:8:0,8,1113 0/0:38,1:39:50:0,50,914 0/0:54,2:56:68:0,68,1411 0/1:22,4:26:81:81,0,338 +chr9 131776947 . A C 60.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.685;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=1.8553;MLEAC=1;MLEAF=0.125;MQ=28.27;MQ0=0;MQRankSum=0.788;QD=2.26;ReadPosRankSum=-0.012;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:36:0,36,409 0/0:21,0:21:39:0,39,434 0/0:23,0:23:48:0,48,500 0/1:22,4:26:97:97,0,189 +chr9 131860437 . A C 43.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.402;DP=121;Dels=0.00;FS=81.501;HaplotypeScore=2.8782;MLEAC=3;MLEAF=0.375;MQ=33.57;MQ0=0;MQRankSum=-1.748;QD=0.48;ReadPosRankSum=0.788;SB=-1.928e+00 GT:AD:DP:GQ:PL 0/1:24,2:26:15:15,0,612 0/1:28,4:33:46:46,0,662 0/0:30,1:31:49:0,49,996 0/1:28,3:31:25:25,0,627 +chr9 131862781 rs10988204 G A 1184.09 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.671;DB;DP=66;Dels=0.02;FS=21.272;HaplotypeScore=5.8313;MLEAC=7;MLEAF=0.875;MQ=26.56;MQ0=0;MQRankSum=3.580;QD=17.94;ReadPosRankSum=1.156;SB=-1.968e+02 GT:AD:DP:GQ:PL 1/1:6,5:11:15:196,15,0 1/1:6,10:16:30:306,30,0 1/1:9,17:26:48:535,48,0 1/1:5,6:12:15:186,15,0 +chr9 131864677 . A C 87.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.250;DP=143;Dels=0.01;FS=3.442;HaplotypeScore=10.1450;MLEAC=4;MLEAF=0.500;MQ=28.80;MQ0=0;MQRankSum=-2.280;QD=0.89;ReadPosRankSum=3.078;SB=-4.390e-01 GT:AD:DP:GQ:PL 0/1:30,5:35:26:26,0,623 0/1:33,4:37:31:31,0,418 0/0:41,3:44:2:0,2,664 0/1:22,3:25:71:71,0,190 +chr9 132341291 rs1220674 A C 36.26 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.380;DB;DP=7;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=22.36;MQ0=0;MQRankSum=1.380;QD=7.25;ReadPosRankSum=0.720;SB=4.74 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:35,3,0 1/1:2,1:3:3:39,3,0 0/0:2,0:2:3:0,3,30 +chr9 132569750 rs11789668 C G 278.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.988;DB;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.1288;MLEAC=3;MLEAF=0.375;MQ=35.02;MQ0=0;MQRankSum=-2.070;QD=7.34;ReadPosRankSum=-0.947;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:51:0,51,672 0/1:7,6:13:99:172,0,185 0/1:11,3:14:75:75,0,343 0/1:8,3:11:75:75,0,239 +chr9 132580686 rs13297609 G C 1237.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.759;DB;DP=135;Dels=0.00;FS=2.605;HaplotypeScore=1.9090;MLEAC=3;MLEAF=0.375;MQ=32.46;MQ0=0;MQRankSum=-1.557;QD=13.17;ReadPosRankSum=0.164;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,114,1409 0/1:18,13:32:99:343,0,471 0/1:11,15:26:99:443,0,282 0/1:19,17:36:99:495,0,513 +chr9 132620707 rs2134601 T C 1401.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.434;DB;DP=70;Dels=0.03;FS=17.540;HaplotypeScore=8.3820;MLEAC=8;MLEAF=1.00;MQ=30.32;MQ0=0;MQRankSum=2.707;QD=20.03;ReadPosRankSum=-1.479;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:7,10:17:30:373,30,0 1/1:7,12:20:36:429,36,0 1/1:8,12:20:33:395,33,0 1/1:3,8:11:21:244,21,0 +chr9 132620990 rs2174157 T C 2945.46 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.659;DB;DP=106;Dels=0.00;FS=46.996;HaplotypeScore=1.7751;MLEAC=7;MLEAF=0.875;MQ=32.87;MQ0=0;MQRankSum=3.404;QD=27.79;ReadPosRankSum=1.361;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,21:26:12:671,0,12 1/1:9,25:34:17:883,17,0 1/1:4,19:24:33:718,33,0 1/1:3,19:22:57:717,57,0 +chr9 132623788 . T C 64.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.130;DP=103;Dels=0.01;FS=4.596;HaplotypeScore=1.9079;MLEAC=2;MLEAF=0.250;MQ=35.51;MQ0=0;MQRankSum=-4.058;QD=1.37;ReadPosRankSum=-0.978;SB=-1.028e-02 GT:AD:DP:GQ:PL 0/0:27,1:28:34:0,34,691 0/1:18,6:24:72:72,0,425 0/0:27,1:28:33:0,33,738 0/1:18,4:22:34:34,0,362 +chr9 132842020 . A C 76.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.262;DP=97;Dels=0.02;FS=79.411;HaplotypeScore=11.0991;MLEAC=3;MLEAF=0.375;MQ=30.09;MQ0=0;MQRankSum=-3.707;QD=1.18;ReadPosRankSum=1.439;SB=-3.781e-01 GT:AD:DP:GQ:PL 0/1:17,6:23:54:54,0,416 0/1:18,3:22:8:8,0,489 0/0:28,4:32:13:0,13,670 0/1:14,4:18:57:57,0,254 +chr9 133284310 rs10793975 G A 245.81 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.412;DB;DP=15;Dels=0.00;FS=6.286;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=27.41;MQ0=0;MQRankSum=2.298;QD=16.39;ReadPosRankSum=0.412;SB=-3.483e+01 GT:AD:DP:GQ:PL 0/1:2,4:6:41:118,0,41 1/1:1,4:5:12:143,12,0 0/1:3,1:4:21:26,0,21 ./. +chr9 133578520 . G GA 483.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=5.656;DP=152;FS=55.112;HaplotypeScore=142.0143;MLEAC=3;MLEAF=0.375;MQ=29.07;MQ0=0;MQRankSum=-3.903;QD=4.24;ReadPosRankSum=0.346;SB=-1.413e-01 GT:AD:DP:GQ:PL 0/1:31,5:31:99:107,0,815 0/1:34,8:39:99:195,0,1030 0/0:35,2:30:7:0,7,930 0/1:23,9:28:99:233,0,640 +chr9 133755528 rs2227985 A G 1717.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.640;DB;DP=207;Dels=0.00;FS=0.741;HaplotypeScore=1.2421;MLEAC=3;MLEAF=0.375;MQ=38.51;MQ0=0;MQRankSum=-2.641;QD=11.15;ReadPosRankSum=2.672;SB=-3.410e+02 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,153,2034 0/1:34,22:56:99:671,0,1018 0/1:41,21:62:99:633,0,1306 0/1:21,15:36:99:457,0,693 +chr9 133760409 . G A 46.87 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.149;DP=31;Dels=0.03;FS=5.310;HaplotypeScore=0.7977;MLEAC=2;MLEAF=0.250;MQ=23.73;MQ0=0;MQRankSum=0.334;QD=3.61;ReadPosRankSum=-0.556;SB=0.385 GT:AD:DP:GQ:PL 0/1:6,1:7:11:11,0,139 0/1:3,3:6:17:76,0,17 0/0:11,0:11:15:0,15,147 0/0:6,0:6:12:0,12,129 +chr9 133914570 rs2293518 G A 145.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.314;DB;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.4963;MLEAC=1;MLEAF=0.125;MQ=35.45;MQ0=0;MQRankSum=-1.761;QD=9.67;ReadPosRankSum=-0.447;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,7:15:99:181,0,265 0/0:14,0:14:36:0,36,436 0/0:15,0:15:42:0,42,553 0/0:6,0:6:18:0,18,219 +chr9 133928345 rs12349966 C T 846.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.296;DB;DP=123;Dels=0.00;FS=5.547;HaplotypeScore=1.9389;MLEAC=5;MLEAF=0.625;MQ=33.31;MQ0=0;MQRankSum=-0.219;QD=6.88;ReadPosRankSum=2.820;SB=-3.949e+02 GT:AD:DP:GQ:PL 0/1:21,7:28:99:153,0,498 1/1:10,12:22:30:332,30,0 0/1:26,13:39:99:342,0,590 0/1:29,5:34:65:65,0,512 +chr9 133957619 . C G 130.40 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.953;DP=23;Dels=0.00;FS=6.107;HaplotypeScore=3.2244;MLEAC=3;MLEAF=0.500;MQ=22.73;MQ0=0;MQRankSum=1.376;QD=6.86;ReadPosRankSum=1.164;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,3:6:12:76,0,12 ./. 0/1:4,2:6:32:50,0,32 0/1:5,2:7:42:43,0,42 +chr9 133960773 rs36035484 T C 162.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.602;DB;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.4983;MLEAC=3;MLEAF=0.375;MQ=33.16;MQ0=0;MQRankSum=-2.365;QD=10.85;ReadPosRankSum=-0.076;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:27:0,27,355 1/1:1,6:7:15:168,15,0 0/1:6,2:8:43:43,0,161 0/0:5,0:5:15:0,15,197 +chr9 133963008 rs4740412 G A 935.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.197;DB;DP=87;Dels=0.00;FS=7.942;HaplotypeScore=1.5719;MLEAC=4;MLEAF=0.500;MQ=33.26;MQ0=0;MQRankSum=-0.016;QD=12.99;ReadPosRankSum=0.556;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:3,17:20:51:608,51,0 0/0:15,0:15:42:0,42,512 0/1:21,8:29:99:202,0,571 0/1:16,6:23:99:174,0,360 +chr9 134001276 . C A 51.19 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.945;DP=44;Dels=0.00;FS=30.604;HaplotypeScore=0.9935;MLEAC=2;MLEAF=0.250;MQ=35.95;MQ0=0;MQRankSum=-1.743;QD=2.05;ReadPosRankSum=-0.483;SB=6.55 GT:AD:DP:GQ:PL 0/0:6,1:7:9:0,9,113 0/1:9,1:10:17:17,0,226 0/1:11,3:15:75:75,0,412 0/0:12,0:12:24:0,24,282 +chr9 134183379 rs2966332 C T 1208.59 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.531;DB;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.5906;MLEAC=7;MLEAF=0.875;MQ=30.79;MQ0=0;MQRankSum=1.230;QD=20.84;ReadPosRankSum=-0.928;SB=-2.067e+02 GT:AD:DP:GQ:PL 0/1:13,4:17:99:122,0,192 1/1:5,12:17:36:451,36,0 1/1:4,12:16:36:465,36,0 1/1:1,7:8:18:215,18,0 +chr9 134183503 rs2986606 T C 1075.58 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.476;DB;DP=59;Dels=0.00;FS=13.922;HaplotypeScore=4.2625;MLEAC=7;MLEAF=0.875;MQ=29.29;MQ0=0;MQRankSum=1.430;QD=18.23;ReadPosRankSum=0.313;SB=-3.391e+02 GT:AD:DP:GQ:PL 0/1:8,3:11:91:91,0,192 1/1:3,13:16:12:359,12,0 1/1:5,12:17:33:398,33,0 1/1:5,10:15:5:271,5,0 +chr9 134323099 . T C 113.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.498;DP=103;Dels=0.00;FS=23.626;HaplotypeScore=3.7308;MLEAC=2;MLEAF=0.250;MQ=32.57;MQ0=0;MQRankSum=-2.021;QD=2.47;ReadPosRankSum=1.913;SB=2.80 GT:AD:DP:GQ:PL 0/0:23,1:24:16:0,16,428 0/1:21,4:25:62:62,0,387 0/0:32,1:33:41:0,41,675 0/1:17,4:21:93:93,0,315 +chr9 134369959 . C A 443.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.440;DP=68;Dels=0.01;FS=5.596;HaplotypeScore=1.4962;MLEAC=4;MLEAF=0.500;MQ=35.73;MQ0=0;MQRankSum=-1.652;QD=6.52;ReadPosRankSum=2.725;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,4:18:99:124,0,272 0/1:13,3:17:71:71,0,154 0/1:12,5:17:99:139,0,168 0/1:9,6:15:99:152,0,226 +chr9 134404496 . A C 81.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.129;DP=48;Dels=0.02;FS=5.100;HaplotypeScore=5.6692;MLEAC=3;MLEAF=0.375;MQ=18.10;MQ0=0;MQRankSum=2.637;QD=2.32;ReadPosRankSum=-1.125;SB=0.507 GT:AD:DP:GQ:PL 0/1:7,1:8:20:20,0,30 0/1:11,2:13:44:45,0,44 0/0:13,0:13:15:0,15,128 0/1:10,3:13:16:59,0,16 +chr9 135106054 rs2274854 T A 134.27 . AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;FS=3.424;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.78;MQ0=0;QD=26.85;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,5:5:15:167,15,0 ./. +chr9 135172442 . C A 137.38 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.687;DP=52;Dels=0.00;FS=2.476;HaplotypeScore=1.2928;MLEAC=2;MLEAF=0.333;MQ=30.88;MQ0=0;MQRankSum=-1.552;QD=4.29;ReadPosRankSum=1.670;SB=0.034 GT:AD:DP:GQ:PL 0/1:12,7:19:99:168,0,173 0/0:16,0:16:27:0,27,322 0/1:12,1:13:6:6,0,220 ./. +chr9 135202816 . T G 755.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.117;DP=153;Dels=0.00;FS=141.185;HaplotypeScore=5.4155;MLEAC=4;MLEAF=0.500;MQ=32.08;MQ0=0;MQRankSum=-3.326;QD=4.94;ReadPosRankSum=1.698;SB=0.042 GT:AD:DP:GQ:PL 0/1:29,13:42:99:324,0,534 0/1:41,9:50:99:183,0,965 0/1:35,11:46:99:241,0,810 0/1:13,2:15:50:50,0,220 +chr9 135374898 rs562350 T C 2374.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.236;DB;DP=223;Dels=0.00;FS=0.535;HaplotypeScore=2.0960;MLEAC=4;MLEAF=0.500;MQ=38.33;MQ0=0;MQRankSum=-2.404;QD=15.12;ReadPosRankSum=1.231;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:7,38:45:90:1450,90,0 0/0:65,0:65:99:0,175,2322 0/1:43,16:59:99:467,0,1288 0/1:36,17:53:99:506,0,892 +chr9 135762834 . G C 196.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.820;DP=187;Dels=0.00;FS=91.416;HaplotypeScore=30.6355;MLEAC=3;MLEAF=0.375;MQ=29.72;MQ0=0;MQRankSum=-3.692;QD=1.42;ReadPosRankSum=3.627;SB=0.023 GT:AD:DP:GQ:PL 0/1:39,8:47:99:105,0,940 0/0:44,5:49:8:0,8,1125 0/1:36,8:44:94:94,0,860 0/1:40,7:47:40:40,0,826 +chr9 135779805 . G C 135.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.547;DP=70;Dels=0.01;FS=47.096;HaplotypeScore=9.8511;MLEAC=2;MLEAF=0.250;MQ=32.19;MQ0=0;MQRankSum=-1.497;QD=3.66;ReadPosRankSum=-1.022;SB=-5.016e+00 GT:AD:DP:GQ:PL 0/1:12,6:18:99:149,0,426 0/1:16,2:18:28:28,0,314 0/0:20,0:20:51:0,51,646 0/0:13,0:13:21:0,21,255 +chr9 135786112 rs6597586 T C 1138.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.005;DB;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=0.9434;MLEAC=3;MLEAF=0.375;MQ=37.56;MQ0=0;MQRankSum=0.939;QD=8.76;ReadPosRankSum=2.555;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:20,16:36:99:545,0,706 0/0:47,0:47:99:0,126,1658 0/1:45,10:55:99:231,0,1501 0/1:26,13:39:99:406,0,652 +chr9 136133380 rs140263836 CGGG C 1440.52 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.178;DB;DP=103;FS=0.000;HaplotypeScore=8.2393;MLEAC=4;MLEAF=0.500;MQ=35.44;MQ0=0;MQRankSum=-3.271;QD=22.51;RPA=4,1;RU=G;ReadPosRankSum=0.951;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:4,15:18:48:971,48,0 0/0:39,0:34:99:0,102,2121 0/1:15,5:19:99:255,0,807 0/1:19,5:23:99:272,0,901 +chr9 136230573 . C A 48.48 . AC=3;AF=0.500;AN=6;BaseQRankSum=2.126;DP=47;Dels=0.04;FS=15.830;HaplotypeScore=14.4215;MLEAC=3;MLEAF=0.500;MQ=20.10;MQ0=0;MQRankSum=-0.845;QD=1.73;ReadPosRankSum=3.699;SB=23.78 GT:AD:DP:GQ:PL 0/0:8,0:8:3:0,3,27 ./. 0/1:15,4:20:60:60,0,112 1/1:5,1:6:3:26,3,0 +chr9 136241639 rs1179040 C T 31.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=5.2053;MLEAC=2;MLEAF=1.00;MQ=13.54;MQ0=0;MQRankSum=0.736;QD=6.35;ReadPosRankSum=0.736;SB=-2.176e+01 GT:AD:DP:GQ:PL ./. ./. 1/1:3,2:5:6:63,6,0 ./. +chr9 136291355 . G A 121.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.519;DP=55;Dels=0.00;FS=14.743;HaplotypeScore=3.2405;MLEAC=3;MLEAF=0.375;MQ=31.95;MQ0=0;MQRankSum=-0.304;QD=3.56;ReadPosRankSum=-1.414;SB=0.137 GT:AD:DP:GQ:PL 0/1:9,2:11:38:38,0,115 0/1:10,3:13:62:62,0,153 0/0:20,1:21:5:0,5,291 0/1:8,2:10:63:63,0,89 +chr9 136324142 . A C 111.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.619;DP=57;Dels=0.00;FS=20.623;HaplotypeScore=0.7082;MLEAC=4;MLEAF=0.500;MQ=34.60;MQ0=0;MQRankSum=1.054;QD=1.96;ReadPosRankSum=-0.753;SB=-9.896e-02 GT:AD:DP:GQ:PL 0/1:15,1:17:17:17,0,198 0/1:11,1:13:21:21,0,161 0/1:12,3:15:69:69,0,228 0/1:10,2:12:47:47,0,264 +chr9 136333187 . C T 33.17 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.922;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=2.5668;MLEAC=3;MLEAF=0.750;MQ=15.13;MQ0=0;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.421;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:16:16,0,18 1/1:3,2:5:6:53,6,0 ./. ./. +chr9 136341479 . A G 327.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.535;DP=133;Dels=0.01;FS=113.782;HaplotypeScore=2.6468;MLEAC=4;MLEAF=0.500;MQ=31.33;MQ0=0;MQRankSum=0.631;QD=2.46;ReadPosRankSum=1.757;SB=-1.188e-02 GT:AD:DP:GQ:PL 0/1:24,5:29:73:73,0,560 0/1:30,5:36:48:48,0,539 0/1:29,5:35:99:99,0,562 0/1:25,6:32:99:150,0,522 +chr9 136390116 rs2073872 T G 124.11 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.000;DB;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.500;MQ=28.28;MQ0=0;MQRankSum=-0.720;QD=20.68;ReadPosRankSum=-0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,85 ./. 1/1:1,4:6:12:162,12,0 ./. +chr9 136401606 rs11507717 A C 244.80 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.794;DB;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=9.8986;MLEAC=5;MLEAF=0.625;MQ=25.19;MQ0=0;MQRankSum=-0.794;QD=5.21;ReadPosRankSum=-0.575;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,3:16:68:68,0,210 0/1:8,6:14:9:113,0,9 1/1:4,3:7:6:46,6,0 0/1:6,2:9:16:61,0,16 +chr9 136507411 . T C 89.69 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.910;DP=69;Dels=0.03;FS=42.330;HaplotypeScore=17.7078;MLEAC=4;MLEAF=0.500;MQ=27.78;MQ0=0;MQRankSum=-1.349;QD=1.83;ReadPosRankSum=1.108;SB=-2.979e+00 GT:AD:DP:GQ:PL 0/1:16,5:21:88:88,0,261 0/1:9,3:12:31:31,0,118 0/0:18,2:20:0:0,0,257 0/1:13,1:14:10:10,0,175 +chr9 136660799 . T A 42.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.629;DP=129;Dels=0.02;FS=59.635;HaplotypeScore=1.9059;MLEAC=2;MLEAF=0.250;MQ=31.41;MQ0=0;MQRankSum=-0.763;QD=0.62;ReadPosRankSum=-0.594;SB=-1.885e+00 GT:AD:DP:GQ:PL 0/1:28,4:33:35:35,0,649 0/1:32,4:36:48:48,0,852 0/0:26,2:28:3:0,3,658 0/0:28,1:30:57:0,57,593 +chr9 136857246 . G A 49.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.567;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.1446;MLEAC=1;MLEAF=0.125;MQ=21.58;MQ0=0;MQRankSum=0.945;QD=7.00;ReadPosRankSum=-0.189;SB=1.27 GT:AD:DP:GQ:PL 0/0:2,0:2:6:0,6,51 0/0:4,0:4:3:0,3,39 0/0:6,0:6:12:0,12,102 0/1:3,3:7:20:84,0,20 +chr9 137309189 . T G 75.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.358;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.7181;MLEAC=2;MLEAF=0.250;MQ=28.86;MQ0=0;MQRankSum=-1.902;QD=2.61;ReadPosRankSum=1.689;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:33:0,33,394 0/0:8,0:8:18:0,18,212 0/1:10,3:13:40:40,0,190 0/1:11,5:16:77:77,0,213 +chr9 137645585 rs73558066 G A 221.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.319;DB;DP=29;Dels=0.00;FS=4.494;HaplotypeScore=0.4737;MLEAC=4;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=0.859;QD=7.64;ReadPosRankSum=0.627;SB=-2.490e+01 GT:AD:DP:GQ:PL 0/1:3,5:8:76:90,0,76 0/1:5,2:7:43:55,0,43 0/1:6,2:8:44:44,0,127 0/1:3,3:6:16:75,0,16 +chr9 137717782 . G A 114.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.719;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.9157;MLEAC=4;MLEAF=0.500;MQ=31.02;MQ0=0;MQRankSum=-0.092;QD=3.26;ReadPosRankSum=0.203;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:11:11,0,160 0/1:9,5:14:99:124,0,176 0/0:12,1:13:1:0,1,243 0/1:13,1:14:19:19,0,132 +chr9 137717869 rs4842172 C T 83.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.754;DB;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.3856;MLEAC=6;MLEAF=1.00;MQ=17.67;MQ0=0;MQRankSum=1.754;QD=7.57;ReadPosRankSum=-0.937;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:5,1:7:3:39,3,0 1/1:2,1:3:3:40,3,0 1/1:0,1:1:3:39,3,0 +chr9 137889173 rs928365 A G 73.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DB;DP=8;Dels=0.00;FS=8.451;HaplotypeScore=0.3325;MLEAC=4;MLEAF=1.00;MQ=19.95;MQ0=0;MQRankSum=1.231;QD=14.64;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:75,6,0 1/1:2,1:3:3:32,3,0 ./. ./. +chr9 138395873 . A C 117.94 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.154;DP=91;Dels=0.00;FS=12.611;HaplotypeScore=11.8172;MLEAC=4;MLEAF=0.500;MQ=31.39;MQ0=0;MQRankSum=-5.052;QD=1.30;ReadPosRankSum=1.125;SB=-1.908e-01 GT:AD:DP:GQ:PL 0/1:18,3:21:10:10,0,384 0/1:20,3:23:26:26,0,528 0/1:19,6:25:47:47,0,353 0/1:16,6:22:77:77,0,360 +chr9 138440624 rs3827835 G C 92.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.885;DB;DP=113;Dels=0.00;FS=2.751;HaplotypeScore=4.8589;MLEAC=3;MLEAF=0.375;MQ=11.25;MQ0=0;MQRankSum=-2.653;QD=1.01;ReadPosRankSum=-1.198;SB=-5.866e+01 GT:AD:DP:GQ:PL 0/0:13,9:22:3:0,3,31 0/1:34,6:41:19:19,0,50 0/1:12,16:29:12:85,0,12 0/1:8,13:21:23:29,0,23 +chr9 138440748 rs3827840 C T 46.56 . AC=1;AF=0.167;AN=6;BaseQRankSum=-1.344;DB;DP=18;Dels=0.00;FS=4.260;HaplotypeScore=1.5035;MLEAC=1;MLEAF=0.167;MQ=16.49;MQ0=0;MQRankSum=1.485;QD=7.76;ReadPosRankSum=0.919;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,28 0/0:5,0:5:6:0,6,48 0/1:1,4:6:20:80,0,20 ./. +chr9 138556279 . T G 54.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.214;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.7773;MLEAC=4;MLEAF=0.500;MQ=20.09;MQ0=0;MQRankSum=1.157;QD=0.95;ReadPosRankSum=-3.214;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:49:49,0,96 0/1:18,2:20:35:35,0,93 0/0:15,1:16:1:0,1,184 0/1:17,1:18:10:10,0,113 +chr9 138585620 . G A 103.65 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.354;DP=21;Dels=0.00;FS=18.243;HaplotypeScore=2.8467;MLEAC=6;MLEAF=0.750;MQ=21.52;MQ0=0;MQRankSum=2.758;QD=7.40;ReadPosRankSum=-1.485;SB=8.01 GT:AD:DP:GQ:PL 1/1:2,1:3:3:38,3,0 0/0:7,0:7:6:0,6,51 1/1:3,2:6:6:69,6,0 1/1:4,1:5:3:40,3,0 +chr9 138667286 . T A 255.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.886;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.5082;MLEAC=4;MLEAF=0.500;MQ=26.84;MQ0=0;MQRankSum=-1.886;QD=3.19;ReadPosRankSum=-0.535;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,5:21:99:121,0,168 0/1:10,5:15:87:87,0,117 0/1:20,5:25:56:56,0,393 0/1:16,3:19:34:34,0,130 +chr9 138675905 . G A 35.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.931;DP=97;Dels=0.00;FS=26.416;HaplotypeScore=4.8797;MLEAC=1;MLEAF=0.125;MQ=33.75;MQ0=0;MQRankSum=-2.737;QD=1.44;ReadPosRankSum=-0.298;SB=-2.984e+00 GT:AD:DP:GQ:PL 0/0:21,1:22:29:0,29,664 0/0:22,0:22:54:0,54,656 0/1:20,5:25:72:72,0,640 0/0:26,2:28:63:0,63,741 +chr9 138703177 . T G 167.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.850;DP=144;Dels=0.00;FS=87.288;HaplotypeScore=1.2261;MLEAC=3;MLEAF=0.375;MQ=36.31;MQ0=0;MQRankSum=-0.402;QD=1.51;ReadPosRankSum=0.667;SB=-3.273e-01 GT:AD:DP:GQ:PL 0/1:22,7:29:99:150,0,708 0/0:31,1:33:43:0,43,858 0/1:37,4:41:53:53,0,980 0/1:38,3:41:7:7,0,1088 +chr9 138773398 . G C 46.31 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.429;DP=111;Dels=0.02;FS=0.000;HaplotypeScore=15.5418;MLEAC=2;MLEAF=0.250;MQ=24.36;MQ0=0;MQRankSum=0.911;QD=0.86;ReadPosRankSum=-0.219;SB=-1.197e-01 GT:AD:DP:GQ:PL 0/0:24,1:26:7:0,7,326 0/1:25,4:29:69:69,0,322 0/0:28,1:29:39:0,39,443 0/1:22,3:25:18:18,0,197 +chr9 139113600 . T A 66.37 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.148;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=9.6922;MLEAC=4;MLEAF=0.500;MQ=25.97;MQ0=0;MQRankSum=0.707;QD=1.12;ReadPosRankSum=-0.049;SB=2.99 GT:AD:DP:GQ:PL 0/1:12,1:13:3:3,0,180 0/1:12,2:14:36:36,0,168 0/1:15,3:18:56:56,0,240 0/1:11,1:13:12:12,0,85 +chr9 139118774 . C T 36.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.888;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=6.6780;MLEAC=2;MLEAF=0.250;MQ=26.40;MQ0=0;MQRankSum=-0.407;QD=1.11;ReadPosRankSum=-1.146;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:21:0,21,257 0/0:11,0:11:18:0,18,229 0/1:16,3:20:26:26,0,286 0/1:10,2:12:52:52,0,135 +chr9 139243085 . G T 39.32 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.382;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.2774;MLEAC=3;MLEAF=0.500;MQ=20.91;MQ0=0;MQRankSum=0.566;QD=5.62;ReadPosRankSum=0.715;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:24,3,0 0/0:5,0:5:6:0,6,72 0/1:4,2:6:52:54,0,52 +chr9 139256722 . G C 42.38 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.296;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.3111;MLEAC=4;MLEAF=0.667;MQ=19.10;MQ0=0;MQRankSum=2.166;QD=3.85;ReadPosRankSum=0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,1:2:18:24,0,18 1/1:6,1:7:3:29,3,0 0/1:1,1:2:19:28,0,19 ./. +chr9 139266496 rs4077515 C T 146.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.351;DB;DP=53;Dels=0.02;FS=5.056;HaplotypeScore=4.9494;MLEAC=1;MLEAF=0.125;MQ=30.16;MQ0=0;MQRankSum=1.452;QD=7.30;ReadPosRankSum=0.117;SB=0.066 GT:AD:DP:GQ:PL 0/0:11,0:11:21:0,21,234 0/1:11,6:20:99:182,0,195 0/0:13,0:13:33:0,33,421 0/0:8,0:8:18:0,18,225 +chr9 139313587 rs117893486 C T 139.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.292;DB;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=2.3132;MLEAC=1;MLEAF=0.125;MQ=31.43;MQ0=0;MQRankSum=-1.237;QD=5.83;ReadPosRankSum=-0.553;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,8:24:99:176,0,387 0/0:25,1:26:33:0,33,621 0/0:32,0:32:78:0,78,918 0/0:27,0:28:51:0,51,647 +chr9 139354080 . C T 35.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.086;DP=59;Dels=0.00;FS=29.117;HaplotypeScore=1.3429;MLEAC=3;MLEAF=0.375;MQ=33.12;MQ0=0;MQRankSum=-3.260;QD=0.82;ReadPosRankSum=4.072;SB=-3.248e+00 GT:AD:DP:GQ:PL 0/1:8,2:10:28:28,0,225 0/1:15,3:18:44:44,0,333 0/1:14,2:16:3:3,0,301 0/0:14,1:15:3:0,3,300 +chr9 139357399 . G A 642.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.246;DP=132;Dels=0.02;FS=39.396;HaplotypeScore=21.5014;MLEAC=4;MLEAF=0.500;MQ=21.34;MQ0=0;MQRankSum=3.778;QD=4.87;ReadPosRankSum=0.351;SB=0.778 GT:AD:DP:GQ:PL 0/1:26,6:32:99:126,0,106 0/1:15,13:29:22:214,0,22 0/1:26,7:33:37:186,0,37 0/1:27,9:36:99:159,0,162 +chr9 139362930 . T C 104.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.531;DP=148;Dels=0.01;FS=49.039;HaplotypeScore=3.1698;MLEAC=4;MLEAF=0.500;MQ=35.31;MQ0=0;MQRankSum=-3.149;QD=0.70;ReadPosRankSum=-1.121;SB=-5.480e-01 GT:AD:DP:GQ:PL 0/1:32,3:35:11:11,0,738 0/1:33,7:40:99:102,0,821 0/1:44,4:48:21:21,0,1103 0/1:22,2:24:12:12,0,398 +chr9 139410424 rs3125006 A G 146.44 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.299;DB;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.6736;MLEAC=4;MLEAF=0.500;MQ=23.88;MQ0=0;MQRankSum=0.144;QD=3.85;ReadPosRankSum=-0.048;SB=15.93 GT:AD:DP:GQ:PL 1/1:5,4:10:6:65,6,0 0/1:5,2:9:49:53,0,49 0/1:9,1:10:19:19,0,53 0/1:7,2:9:26:53,0,26 +chr9 139652269 rs7045311 G A 85.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.604;DB;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=35.34;MQ0=0;MQRankSum=-2.329;QD=9.55;ReadPosRankSum=-2.018;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:33:0,33,445 0/1:4,5:9:99:122,0,110 0/0:18,0:18:48:0,48,579 0/0:10,0:10:30:0,30,366 +chr9 139658576 rs4880140 G C 954.21 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.779;DB;DP=61;Dels=0.00;FS=3.441;HaplotypeScore=2.1643;MLEAC=5;MLEAF=0.625;MQ=34.08;MQ0=0;MQRankSum=-0.170;QD=15.64;ReadPosRankSum=0.724;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,9:17:99:298,0,280 1/1:4,10:14:11:383,11,0 0/1:7,4:11:99:125,0,206 0/1:13,6:19:99:193,0,156 +chr9 139720353 . C G 556.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.552;DP=218;Dels=0.00;FS=6.419;HaplotypeScore=6.3974;MLEAC=4;MLEAF=0.500;MQ=25.45;MQ0=0;MQRankSum=-0.241;QD=2.55;ReadPosRankSum=0.583;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:43,15:58:99:259,0,456 0/1:49,4:53:9:9,0,872 0/1:59,8:67:66:66,0,1043 0/1:27,12:39:99:264,0,148 +chr9 139745542 . A C 127.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.460;DP=65;Dels=0.00;FS=7.505;HaplotypeScore=5.6823;MLEAC=2;MLEAF=0.250;MQ=22.05;MQ0=0;MQRankSum=-0.129;QD=3.28;ReadPosRankSum=-0.537;SB=0.035 GT:AD:DP:GQ:PL 0/0:9,0:9:12:0,12,128 0/1:14,5:19:79:79,0,132 0/0:17,0:17:18:0,18,176 0/1:14,6:20:59:90,0,59 +chr9 139818465 . C T 119.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.211;DP=53;Dels=0.00;FS=5.237;HaplotypeScore=2.1817;MLEAC=4;MLEAF=0.500;MQ=25.42;MQ0=0;MQRankSum=2.488;QD=2.26;ReadPosRankSum=-1.035;SB=-4.812e-01 GT:AD:DP:GQ:PL 0/1:4,2:6:48:48,0,58 0/1:9,1:10:27:27,0,35 0/1:16,1:17:5:5,0,137 0/1:17,3:20:78:81,0,78 +chr9 139873964 . T G 130.60 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.811;DP=20;Dels=0.00;FS=11.553;HaplotypeScore=2.1653;MLEAC=7;MLEAF=0.875;MQ=17.10;MQ0=0;MQRankSum=3.016;QD=6.53;ReadPosRankSum=2.627;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:14:52,0,14 1/1:2,3:5:6:59,6,0 1/1:3,1:4:3:25,3,0 1/1:5,1:7:3:35,3,0 +chr9 139888287 . A C 202.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.754;DP=52;Dels=0.04;FS=2.722;HaplotypeScore=1.7174;MLEAC=4;MLEAF=0.500;MQ=28.03;MQ0=0;MQRankSum=1.309;QD=3.90;ReadPosRankSum=1.508;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,3:9:46:92,0,46 0/1:7,2:9:51:51,0,69 0/1:17,3:20:75:75,0,202 0/1:9,3:12:19:27,0,19 +chr9 139945051 rs7869520 A G 184.37 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.285;DB;DP=37;Dels=0.00;FS=8.247;HaplotypeScore=2.0069;MLEAC=4;MLEAF=0.500;MQ=25.84;MQ0=0;MQRankSum=1.066;QD=6.36;ReadPosRankSum=0.022;SB=-3.900e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:15:0,15,189 1/1:3,3:7:9:105,9,0 0/1:10,1:11:19:19,0,152 0/1:7,4:11:79:107,0,79 +chr9 139945363 rs2292925 G A 99.59 . AC=2;AF=0.500;AN=4;BaseQRankSum=2.680;DB;DP=23;Dels=0.00;FS=5.021;HaplotypeScore=5.1152;MLEAC=2;MLEAF=0.500;MQ=15.32;MQ0=0;MQRankSum=0.696;QD=9.05;ReadPosRankSum=1.256;SB=-4.862e+01 GT:AD:DP:GQ:PL ./. 0/0:5,1:6:6:0,6,52 1/1:4,7:11:15:138,15,0 ./. +chr9 139945858 . C A 454.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.249;DP=74;Dels=0.00;FS=68.236;HaplotypeScore=16.7629;MLEAC=4;MLEAF=0.500;MQ=24.12;MQ0=0;MQRankSum=0.816;QD=6.14;ReadPosRankSum=2.037;SB=0.038 GT:AD:DP:GQ:PL 0/1:8,7:15:99:169,0,127 0/1:11,11:22:82:169,0,82 0/1:13,5:18:74:74,0,235 0/1:14,5:19:85:85,0,141 +chr9 139960187 . A T 146.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.068;DP=112;Dels=0.02;FS=2.345;HaplotypeScore=15.4463;MLEAC=2;MLEAF=0.250;MQ=26.23;MQ0=0;MQRankSum=-2.450;QD=2.92;ReadPosRankSum=-1.004;SB=-1.402e-02 GT:AD:DP:GQ:PL 0/0:30,2:32:6:0,6,673 0/1:19,6:25:35:35,0,311 0/0:28,2:30:27:0,27,601 0/1:14,9:23:99:152,0,208 +chr9 139994364 . C T 36.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.386;DP=71;Dels=0.01;FS=8.082;HaplotypeScore=8.8421;MLEAC=2;MLEAF=0.250;MQ=24.85;MQ0=0;MQRankSum=-0.651;QD=1.46;ReadPosRankSum=-0.083;SB=-2.176e+00 GT:AD:DP:GQ:PL 0/0:22,1:24:2:0,2,232 0/1:10,3:13:37:62,0,37 0/0:22,0:22:27:0,27,334 0/1:9,2:11:14:14,0,71 +chr9 140128081 . C A 31.15 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.634;DP=68;Dels=0.00;FS=11.419;HaplotypeScore=4.4153;MLEAC=2;MLEAF=0.250;MQ=27.75;MQ0=0;MQRankSum=1.579;QD=0.84;ReadPosRankSum=-1.849;SB=-2.681e+00 GT:AD:DP:GQ:PL 0/0:12,0:12:18:0,18,187 0/1:17,3:21:31:31,0,266 0/0:18,1:19:2:0,2,326 0/1:14,2:16:40:40,0,232 +chr9 140196330 . G T 416.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.014;DP=51;Dels=0.04;FS=3.078;HaplotypeScore=3.4066;MLEAC=4;MLEAF=0.500;MQ=29.47;MQ0=0;MQRankSum=0.285;QD=8.17;ReadPosRankSum=1.590;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,5:11:83:154,0,83 0/1:4,2:6:14:14,0,108 0/1:10,7:17:99:213,0,138 0/1:11,4:15:78:78,0,174 +chr9 140267360 . T A 30.04 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.559;DP=68;Dels=0.00;FS=2.386;HaplotypeScore=5.3378;MLEAC=4;MLEAF=0.500;MQ=31.24;MQ0=0;MQRankSum=-0.741;QD=0.44;ReadPosRankSum=-2.535;SB=-1.694e+00 GT:AD:DP:GQ:PL 0/1:15,1:16:14:14,0,224 0/1:16,1:17:1:1,0,265 0/1:18,2:20:19:19,0,398 0/1:13,2:15:36:36,0,231 +chr9 140481470 . A C 110.47 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.051;DP=96;Dels=0.00;FS=25.514;HaplotypeScore=8.2374;MLEAC=2;MLEAF=0.250;MQ=29.57;MQ0=0;MQRankSum=-2.514;QD=2.08;ReadPosRankSum=0.099;SB=-5.231e-01 GT:AD:DP:GQ:PL 0/0:19,1:20:6:0,6,424 0/0:21,2:23:11:0,11,347 0/1:24,6:30:87:87,0,405 0/1:19,4:23:64:64,0,248 +chr9 140509249 . T C 33.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.265;DP=93;Dels=0.02;FS=25.746;HaplotypeScore=7.3654;MLEAC=1;MLEAF=0.125;MQ=32.99;MQ0=0;MQRankSum=-1.114;QD=1.31;ReadPosRankSum=0.025;SB=-4.855e+00 GT:AD:DP:GQ:PL 0/0:15,0:15:39:0,39,444 0/0:23,1:24:32:0,32,700 0/0:26,0:26:66:0,66,770 0/1:21,5:26:70:70,0,415 +chr9 140669534 . T G 48.94 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.946;DP=124;Dels=0.02;FS=7.524;HaplotypeScore=6.3104;MLEAC=1;MLEAF=0.125;MQ=31.88;MQ0=0;MQRankSum=-3.970;QD=2.04;ReadPosRankSum=1.567;SB=-2.657e+01 GT:AD:DP:GQ:PL 0/0:30,3:33:16:0,16,704 0/0:26,2:28:1:0,1,499 0/0:35,2:37:19:0,19,947 0/1:18,6:24:84:84,0,385 +chr9 140710436 . C T 662.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.225;DP=128;Dels=0.01;FS=152.434;HaplotypeScore=8.6200;MLEAC=4;MLEAF=0.500;MQ=31.74;MQ0=0;MQRankSum=-4.608;QD=5.18;ReadPosRankSum=-1.218;SB=0.807 GT:AD:DP:GQ:PL 0/1:18,7:25:99:145,0,311 0/1:24,7:31:99:155,0,444 0/1:27,13:40:99:239,0,619 0/1:21,10:31:99:166,0,472 +chr9 140943642 rs41302681 G T 1670.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.998;DB;DP=212;Dels=0.00;FS=12.744;HaplotypeScore=1.4995;MLEAC=3;MLEAF=0.375;MQ=39.20;MQ0=0;MQRankSum=-1.933;QD=10.92;ReadPosRankSum=2.293;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,172,2318 0/1:32,20:52:99:678,0,1042 0/1:38,18:56:99:550,0,1186 0/1:28,17:45:99:486,0,964 +chr10 267346 . C T 162.35 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.528;DP=108;Dels=0.03;FS=0.000;HaplotypeScore=2.1777;MLEAC=4;MLEAF=0.500;MQ=38.59;MQ0=0;MQRankSum=-2.538;QD=1.50;ReadPosRankSum=-0.930;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,1:20:7:7,0,217 0/1:27,3:30:16:16,0,583 0/1:33,3:36:34:34,0,526 0/1:14,5:19:99:147,0,151 +chr10 298323 . C T 264.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.326;DP=299;Dels=0.01;FS=53.819;HaplotypeScore=6.6421;MLEAC=4;MLEAF=0.500;MQ=36.20;MQ0=0;MQRankSum=-3.476;QD=0.88;ReadPosRankSum=3.163;SB=-2.325e-02 GT:AD:DP:GQ:PL 0/1:72,7:80:68:68,0,1553 0/1:74,10:84:99:143,0,1947 0/1:65,7:72:71:71,0,1384 0/1:56,5:61:25:25,0,1413 +chr10 696804 . T C 34.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.454;DP=42;Dels=0.00;FS=4.500;HaplotypeScore=5.0069;MLEAC=3;MLEAF=0.375;MQ=21.75;MQ0=0;MQRankSum=-0.333;QD=1.15;ReadPosRankSum=1.543;SB=-2.619e+01 GT:AD:DP:GQ:PL 0/0:11,1:12:9:0,9,83 0/1:8,2:11:21:21,0,26 0/1:9,2:11:16:16,0,66 0/1:6,2:8:28:40,0,28 +chr10 1065777 rs113541732 A G 71.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.588;DB;DP=97;Dels=0.00;FS=2.333;HaplotypeScore=2.2495;MLEAC=3;MLEAF=0.375;MQ=34.79;MQ0=0;MQRankSum=-1.681;QD=0.96;ReadPosRankSum=2.016;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/0:22,0:22:45:0,45,538 0/1:26,4:30:46:46,0,715 0/1:26,5:31:52:52,0,457 0/1:12,2:14:17:17,0,354 +chr10 1229414 . C T 31.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.934;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.1878;MLEAC=4;MLEAF=0.500;MQ=25.92;MQ0=0;MQRankSum=1.246;QD=2.09;ReadPosRankSum=-1.090;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,79 1/1:4,1:5:3:29,3,0 0/1:5,1:6:18:18,0,26 0/1:3,1:4:27:27,0,45 +chr10 3128104 rs12571307 A G 34.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DB;DP=10;Dels=0.00;FS=3.680;HaplotypeScore=0.9159;MLEAC=4;MLEAF=1.00;MQ=20.37;MQ0=0;MQRankSum=1.231;QD=5.67;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,1:3:3:28,3,0 1/1:2,1:3:3:39,3,0 ./. +chr10 3182867 . A T 62.83 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.635;DP=84;Dels=0.02;FS=32.991;HaplotypeScore=15.0783;MLEAC=1;MLEAF=0.125;MQ=28.63;MQ0=0;MQRankSum=-1.619;QD=2.33;ReadPosRankSum=-0.764;SB=-5.843e+00 GT:AD:DP:GQ:PL 0/0:20,1:21:3:0,3,314 0/0:21,2:23:13:0,13,403 0/1:23,4:27:98:98,0,277 0/0:10,1:11:9:0,9,119 +chr10 3189668 rs114003253 T A 239.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.188;DB;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4535;MLEAC=4;MLEAF=0.500;MQ=29.60;MQ0=0;MQRankSum=0.010;QD=2.73;ReadPosRankSum=2.599;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,2:23:28:28,0,305 0/1:21,8:30:99:184,0,209 0/1:16,1:17:11:11,0,188 0/1:15,3:18:59:59,0,179 +chr10 3192036 . T C 50.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.079;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=13.9395;MLEAC=3;MLEAF=0.375;MQ=23.97;MQ0=0;MQRankSum=0.262;QD=0.92;ReadPosRankSum=0.729;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:12:0,12,110 0/1:24,1:25:14:14,0,79 0/1:17,4:21:67:67,0,104 0/1:8,1:9:12:12,0,64 +chr10 3208440 . C A 507.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.221;DP=271;Dels=0.01;FS=199.419;HaplotypeScore=29.6503;MLEAC=4;MLEAF=0.500;MQ=27.40;MQ0=0;MQRankSum=-1.962;QD=1.87;ReadPosRankSum=0.833;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:51,10:61:99:119,0,978 0/1:55,10:66:84:84,0,1078 0/1:71,11:82:99:133,0,1027 0/1:43,13:58:99:214,0,731 +chr10 3212178 . G C 460.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.971;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.6926;MLEAC=4;MLEAF=0.500;MQ=30.01;MQ0=0;MQRankSum=-5.010;QD=5.36;ReadPosRankSum=3.069;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,6:23:99:134,0,289 0/1:15,6:21:99:121,0,271 0/1:18,6:24:94:94,0,269 0/1:10,8:18:99:154,0,286 +chr10 4161357 rs2146058 G A 95.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.727;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=33.61;MQ0=0;MQRankSum=0.727;QD=19.05;ReadPosRankSum=0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:43,3,0 1/1:0,1:1:3:43,3,0 1/1:1,1:2:3:44,3,0 ./. +chr10 4929527 rs3924661 C T 1201.34 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.382;DB;DP=68;Dels=0.04;FS=11.328;HaplotypeScore=2.3142;MLEAC=5;MLEAF=0.625;MQ=37.97;MQ0=0;MQRankSum=1.118;QD=17.67;ReadPosRankSum=0.771;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,10:18:99:372,0,233 1/1:1,15:16:6:498,6,0 0/1:10,8:18:99:287,0,320 0/1:10,3:13:88:88,0,172 +chr10 5202060 rs1781940 C T 122.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.420;DB;DP=125;Dels=0.00;FS=3.019;HaplotypeScore=1.8428;MLEAC=1;MLEAF=0.125;MQ=18.70;MQ0=0;MQRankSum=2.421;QD=8.13;ReadPosRankSum=0.610;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:9,6:15:82:158,0,82 0/0:37,0:37:18:0,18,201 0/0:40,0:40:27:0,27,282 0/0:33,0:33:24:0,24,262 +chr10 5249377 rs1334474 A T 170.41 . AC=5;AF=0.833;AN=6;BaseQRankSum=2.072;DB;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=0.3856;MLEAC=5;MLEAF=0.833;MQ=23.54;MQ0=0;MQRankSum=2.383;QD=9.47;ReadPosRankSum=0.365;SB=-7.510e+01 GT:AD:DP:GQ:PL 0/1:4,1:5:18:18,0,26 1/1:6,4:10:12:151,12,0 1/1:1,1:2:3:41,3,0 ./. +chr10 5690228 rs149694830 A C 34.69 . AC=4;AF=0.667;AN=6;BaseQRankSum=2.757;DB;DP=111;Dels=0.03;FS=14.157;HaplotypeScore=4.0682;MLEAC=4;MLEAF=0.667;MQ=6.66;MQ0=0;MQRankSum=2.627;QD=0.68;ReadPosRankSum=-1.222;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:19,1:20:3:23,3,0 0/0:32,1:33:6:0,6,49 ./. 1/1:26,4:30:6:52,6,0 +chr10 5784543 . G A 156.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.540;DP=52;Dels=0.00;FS=2.663;HaplotypeScore=0.9646;MLEAC=4;MLEAF=0.500;MQ=24.80;MQ0=0;MQRankSum=-0.592;QD=4.01;ReadPosRankSum=2.387;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:43:43,0,62 0/0:12,1:13:15:0,15,142 0/1:12,4:16:52:99,0,52 1/1:5,3:8:6:60,6,0 +chr10 5790729 rs11593253 C T 480.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.036;DB;DP=133;Dels=0.01;FS=5.975;HaplotypeScore=1.9593;MLEAC=3;MLEAF=0.375;MQ=32.53;MQ0=0;MQRankSum=-0.931;QD=5.17;ReadPosRankSum=1.456;SB=-1.130e+02 GT:AD:DP:GQ:PL 0/1:24,8:32:99:204,0,579 0/0:40,0:40:99:0,105,1295 0/1:32,7:39:99:166,0,749 0/1:13,8:21:99:154,0,286 +chr10 5791464 . C G 31.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.488;DP=264;Dels=0.00;FS=94.845;HaplotypeScore=28.4742;MLEAC=2;MLEAF=0.250;MQ=32.43;MQ0=0;MQRankSum=-5.128;QD=0.21;ReadPosRankSum=0.161;SB=-1.014e+00 GT:AD:DP:GQ:PL 0/1:63,7:70:48:48,0,1387 0/0:57,4:61:52:0,52,1405 0/1:71,7:78:25:25,0,1636 0/0:51,2:54:63:0,63,1296 +chr10 6005674 rs3136614 G A 1030.03 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.558;DB;DP=38;Dels=0.03;FS=30.065;HaplotypeScore=1.2251;MLEAC=8;MLEAF=1.00;MQ=33.74;MQ0=0;MQRankSum=2.765;QD=27.11;ReadPosRankSum=0.622;SB=-4.000e+01 GT:AD:DP:GQ:PL 1/1:3,7:10:21:278,21,0 1/1:2,7:9:21:284,21,0 1/1:1,6:7:18:236,18,0 1/1:4,7:11:21:271,21,0 +chr10 6063674 rs942200 T C 1468.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.136;DB;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7494;MLEAC=5;MLEAF=0.625;MQ=38.64;MQ0=0;MQRankSum=-1.413;QD=16.69;ReadPosRankSum=2.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,15:17:45:572,45,0 0/1:15,9:24:99:293,0,508 0/1:13,8:21:99:252,0,447 0/1:14,12:26:99:397,0,473 +chr10 6193573 . G C 32.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.000;DP=16;Dels=0.00;FS=3.310;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=12.08;MQ0=0;MQRankSum=1.026;QD=8.00;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:31,3,0 ./. 1/1:1,1:2:3:34,3,0 ./. +chr10 6262782 . A C 87.06 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.864;DP=104;Dels=0.01;FS=3.486;HaplotypeScore=1.1584;MLEAC=4;MLEAF=0.500;MQ=30.10;MQ0=0;MQRankSum=2.320;QD=0.84;ReadPosRankSum=-2.904;SB=-4.256e-01 GT:AD:DP:GQ:PL 0/1:22,2:24:19:19,0,317 0/1:22,3:25:40:40,0,474 0/1:23,2:25:9:9,0,573 0/1:25,4:29:61:61,0,451 +chr10 6370206 . A C 635.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.106;DP=177;Dels=0.00;FS=74.314;HaplotypeScore=3.1812;MLEAC=4;MLEAF=0.500;MQ=33.05;MQ0=0;MQRankSum=0.859;QD=3.59;ReadPosRankSum=2.671;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,7:42:99:122,0,750 0/1:36,10:46:99:243,0,764 0/1:39,9:48:99:181,0,838 0/1:34,7:41:99:132,0,480 +chr10 7776796 . G C 196.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.710;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=4.6679;MLEAC=4;MLEAF=0.500;MQ=23.70;MQ0=0;MQRankSum=1.065;QD=2.14;ReadPosRankSum=-1.035;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:67:67,0,116 0/1:17,4:21:32:32,0,95 0/1:23,5:28:90:90,0,250 0/1:20,3:24:37:50,0,37 +chr10 7875832 . G A 33.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.602;DP=61;Dels=0.00;FS=11.650;HaplotypeScore=1.5539;MLEAC=3;MLEAF=0.375;MQ=16.32;MQ0=0;MQRankSum=2.237;QD=0.69;ReadPosRankSum=-0.533;SB=-5.007e-01 GT:AD:DP:GQ:PL 0/1:13,1:14:10:10,0,125 0/0:12,0:12:6:0,6,60 0/1:15,1:16:14:14,0,56 0/1:16,3:19:14:51,0,14 +chr10 8556026 . C A 92.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.114;DP=128;Dels=0.00;FS=2.283;HaplotypeScore=1.3072;MLEAC=4;MLEAF=0.500;MQ=19.67;MQ0=0;MQRankSum=3.281;QD=0.72;ReadPosRankSum=0.566;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,1:28:24:24,0,39 0/1:24,3:27:72:72,0,106 0/1:36,2:38:33:33,0,71 0/1:34,1:35:5:5,0,126 +chr10 11299735 rs2277212 A T 1728.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.151;DB;DP=117;Dels=0.03;FS=2.558;HaplotypeScore=1.2163;MLEAC=5;MLEAF=0.625;MQ=34.20;MQ0=0;MQRankSum=-1.569;QD=14.77;ReadPosRankSum=1.864;SB=-7.755e+02 GT:AD:DP:GQ:PL 1/1:3,22:26:30:752,30,0 0/1:22,15:37:99:395,0,755 0/1:15,13:28:99:363,0,349 0/1:13,9:22:99:264,0,420 +chr10 11911566 . A G 40.29 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.471;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=6.2210;MLEAC=4;MLEAF=0.500;MQ=22.61;MQ0=0;MQRankSum=1.349;QD=0.72;ReadPosRankSum=-2.015;SB=-7.443e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:10:10,0,155 0/1:10,1:11:15:15,0,82 0/1:15,2:17:12:12,0,215 0/1:10,2:12:45:45,0,60 +chr10 12202866 rs10906092 A T 332.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.290;DB;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.3627;MLEAC=1;MLEAF=0.125;MQ=34.93;MQ0=0;MQRankSum=0.715;QD=9.51;ReadPosRankSum=0.669;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:30,0:30:90:0,90,1207 0/1:23,12:35:99:369,0,754 0/0:44,0:44:99:0,132,1612 0/0:28,0:28:72:0,72,786 +chr10 12288302 rs36042706 A G 1539.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=-3.000;DB;DP=75;Dels=0.00;FS=6.193;HaplotypeScore=1.8906;MLEAC=7;MLEAF=0.875;MQ=35.05;MQ0=0;MQRankSum=-0.876;QD=20.53;ReadPosRankSum=1.460;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:1,14:15:42:499,42,0 0/1:18,5:23:75:75,0,615 1/1:5,18:23:35:649,35,0 1/1:4,10:14:30:361,30,0 +chr10 13246385 . T A 56.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.532;DP=167;Dels=0.01;FS=2.225;HaplotypeScore=2.7077;MLEAC=1;MLEAF=0.125;MQ=35.94;MQ0=0;MQRankSum=-2.077;QD=1.63;ReadPosRankSum=-2.034;SB=-1.109e-02 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,99,1157 0/0:42,2:44:44:0,44,1405 0/0:50,0:50:99:0,117,1490 0/1:29,6:35:93:93,0,655 +chr10 13370315 rs3740211 C T 2575.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.812;DB;DP=93;Dels=0.00;FS=8.155;HaplotypeScore=3.5802;MLEAC=7;MLEAF=0.875;MQ=34.34;MQ0=0;MQRankSum=-1.020;QD=27.69;ReadPosRankSum=0.556;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,5:17:99:145,0,365 1/1:2,21:23:40:735,40,0 1/1:3,21:24:63:801,63,0 1/1:4,25:29:75:939,75,0 +chr10 13494695 . C T 30.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.659;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6462;MLEAC=3;MLEAF=0.375;MQ=28.03;MQ0=0;MQRankSum=0.118;QD=1.51;ReadPosRankSum=1.896;SB=1.98 GT:AD:DP:GQ:PL 0/0:14,0:15:18:0,18,187 0/0:19,0:20:12:0,12,116 0/1:15,1:16:18:18,0,98 1/1:2,2:4:6:57,6,0 +chr10 13655815 . G C 263.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.776;DP=109;Dels=0.01;FS=47.434;HaplotypeScore=10.0341;MLEAC=4;MLEAF=0.500;MQ=29.86;MQ0=0;MQRankSum=-2.195;QD=2.42;ReadPosRankSum=2.278;SB=-1.268e-02 GT:AD:DP:GQ:PL 0/1:17,7:25:99:130,0,496 0/1:27,6:33:97:97,0,638 0/1:32,4:36:43:43,0,628 0/1:11,3:14:36:36,0,122 +chr10 13782124 rs10906462 A G 992.03 . AC=8;AF=1.00;AN=8;DB;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.3526;MLEAC=8;MLEAF=1.00;MQ=28.85;MQ0=0;QD=24.20;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,10:12:24:273,24,0 1/1:1,8:9:24:276,24,0 1/1:4,10:14:27:312,27,0 1/1:0,6:6:15:170,15,0 +chr10 14013954 rs4750440 C A 39.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=9;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.28;MQ0=0;MQRankSum=0.736;QD=13.26;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,2:3:6:71,6,0 ./. +chr10 14572544 . T G 110.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.014;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7412;MLEAC=3;MLEAF=0.375;MQ=35.53;MQ0=0;MQRankSum=-0.397;QD=2.36;ReadPosRankSum=0.452;SB=-2.241e-02 GT:AD:DP:GQ:PL 0/1:17,2:19:25:25,0,170 0/1:16,4:20:99:112,0,286 0/0:29,0:30:51:0,51,554 0/1:7,1:8:17:17,0,71 +chr10 14885903 . A T 204.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.411;DP=95;Dels=0.01;FS=9.625;HaplotypeScore=2.2206;MLEAC=3;MLEAF=0.375;MQ=36.22;MQ0=0;MQRankSum=-3.993;QD=2.77;ReadPosRankSum=1.755;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:19,4:23:89:89,0,387 0/1:18,6:24:99:105,0,379 0/1:23,4:27:54:54,0,516 0/0:19,1:20:19:0,19,498 +chr10 14981874 . A G 47.72 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.086;DP=120;Dels=0.00;FS=76.451;HaplotypeScore=3.7280;MLEAC=2;MLEAF=0.250;MQ=11.75;MQ0=0;MQRankSum=1.608;QD=0.61;ReadPosRankSum=-1.655;SB=-1.115e+00 GT:AD:DP:GQ:PL 0/1:30,3:34:16:22,0,16 0/0:28,2:31:6:0,6,57 0/1:39,5:44:62:66,0,62 0/0:10,0:11:9:0,9,85 +chr10 15014418 rs1935400 C G 2267.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.511;DB;DP=91;Dels=0.00;FS=13.500;HaplotypeScore=1.0729;MLEAC=7;MLEAF=0.875;MQ=31.86;MQ0=0;MQRankSum=-0.771;QD=24.92;ReadPosRankSum=0.233;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,21:25:42:705,42,0 0/1:18,13:31:99:360,0,463 1/1:0,24:24:72:854,72,0 1/1:0,11:11:33:393,33,0 +chr10 15255113 . C T 366.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.160;DP=83;Dels=0.00;FS=60.442;HaplotypeScore=14.5760;MLEAC=4;MLEAF=0.500;MQ=25.10;MQ0=0;MQRankSum=-2.575;QD=4.42;ReadPosRankSum=1.605;SB=0.015 GT:AD:DP:GQ:PL 0/1:15,5:20:81:81,0,338 0/1:11,6:17:83:83,0,106 0/1:17,7:24:84:84,0,281 0/1:13,8:22:92:161,0,92 +chr10 15697450 . ATT A 177.55 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.521;DP=54;FS=0.000;HaplotypeScore=13.7062;MLEAC=5;MLEAF=0.625;MQ=17.69;MQ0=0;MQRankSum=-0.521;QD=3.29;RPA=5,3;RU=T;ReadPosRankSum=-1.447;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:7,5:3:40:40,0,40 0/1:7,7:6:54:87,0,54 0/1:17,5:9:53:53,0,122 1/1:0,2:1:3:49,3,0 +chr10 16948248 . T G 39.90 . AC=1;AF=0.167;AN=6;BaseQRankSum=-1.830;DP=96;Dels=0.00;FS=19.769;HaplotypeScore=0.9439;MLEAC=1;MLEAF=0.167;MQ=16.17;MQ0=0;MQRankSum=2.356;QD=1.00;ReadPosRankSum=-0.750;SB=0.216 GT:AD:DP:GQ:PL 0/0:22,0:22:9:0,9,105 0/1:37,3:40:74:74,0,74 0/0:25,0:25:6:0,6,60 ./. +chr10 17157579 . T A 54.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.504;DP=173;Dels=0.01;FS=48.081;HaplotypeScore=5.1511;MLEAC=2;MLEAF=0.250;MQ=35.75;MQ0=0;MQRankSum=-2.956;QD=0.73;ReadPosRankSum=-0.948;SB=0.771 GT:AD:DP:GQ:PL 0/1:34,4:38:24:24,0,782 0/0:42,2:44:21:0,21,1042 0/0:49,3:52:82:0,82,1401 0/1:32,5:37:72:72,0,540 +chr10 17242462 rs10904905 A G 539.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.087;DB;DP=124;Dels=0.01;FS=6.869;HaplotypeScore=6.7964;MLEAC=3;MLEAF=0.375;MQ=32.73;MQ0=0;MQRankSum=0.524;QD=6.07;ReadPosRankSum=1.145;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:35,0:35:81:0,81,984 0/1:34,5:39:85:85,0,1081 0/1:25,15:40:99:419,0,739 0/1:6,3:9:79:79,0,149 +chr10 17636412 . T A 201.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.554;DP=70;Dels=0.00;FS=2.629;HaplotypeScore=4.4119;MLEAC=3;MLEAF=0.375;MQ=27.50;MQ0=0;MQRankSum=-1.100;QD=3.01;ReadPosRankSum=3.527;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,5:18:86:86,0,95 0/1:19,7:26:99:148,0,175 0/1:21,1:23:8:8,0,207 0/0:2,1:3:3:0,3,33 +chr10 18267096 rs2437260 G A 930.22 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.178;DB;DP=45;Dels=0.00;FS=7.361;HaplotypeScore=0.4981;MLEAC=7;MLEAF=0.875;MQ=30.73;MQ0=0;MQRankSum=-1.015;QD=20.67;ReadPosRankSum=-0.014;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,6:15:99:150,0,277 1/1:2,10:12:30:366,30,0 1/1:1,11:12:33:387,33,0 1/1:2,4:6:6:71,6,0 +chr10 18550958 . T C 77.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.609;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.5600;MLEAC=2;MLEAF=0.250;MQ=33.89;MQ0=0;MQRankSum=-3.711;QD=0.91;ReadPosRankSum=1.901;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:39,5:44:54:54,0,839 0/0:53,1:54:77:0,77,1242 0/0:49,3:52:73:0,73,1118 0/1:36,5:41:65:65,0,671 +chr10 18823252 . A G 337.82 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.971;DP=49;Dels=0.02;FS=5.166;HaplotypeScore=4.7928;MLEAC=8;MLEAF=1.00;MQ=27.25;MQ0=0;MQRankSum=0.100;QD=6.89;ReadPosRankSum=2.105;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,3:12:6:47,6,0 1/1:14,3:17:9:100,9,0 1/1:6,8:14:18:176,18,0 1/1:3,2:5:6:53,6,0 +chr10 18826974 rs2272274 T C 121.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.995;DB;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=2.6500;MLEAC=3;MLEAF=0.375;MQ=31.99;MQ0=0;MQRankSum=0.498;QD=6.09;ReadPosRankSum=-0.142;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,3:9:60:100,0,60 0/0:8,0:8:21:0,21,298 0/1:3,1:4:34:34,0,72 0/1:6,1:7:31:31,0,54 +chr10 18931512 rs7907153 T C 1182.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.805;DB;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.2790;MLEAC=3;MLEAF=0.375;MQ=34.92;MQ0=0;MQRankSum=-3.433;QD=9.24;ReadPosRankSum=2.619;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:45,11:56:99:271,0,1184 0/0:66,0:66:99:0,196,2550 0/1:29,28:57:99:854,0,897 0/1:10,5:15:99:101,0,341 +chr10 18957647 rs10741127 T G 789.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.549;DB;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.2458;MLEAC=3;MLEAF=0.375;MQ=36.74;MQ0=0;MQRankSum=-1.414;QD=10.97;ReadPosRankSum=-0.174;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,13:29:99:399,0,501 0/0:35,0:35:99:0,99,1319 0/1:22,9:31:99:251,0,683 0/1:6,6:12:99:183,0,200 +chr10 19229606 rs7907800 C T 872.73 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.836;DB;DP=75;Dels=0.00;FS=1.235;HaplotypeScore=1.5364;MLEAC=7;MLEAF=0.875;MQ=22.62;MQ0=0;MQRankSum=-0.115;QD=11.64;ReadPosRankSum=1.465;SB=-3.519e+02 GT:AD:DP:GQ:PL 1/1:1,18:21:30:322,30,0 0/1:11,5:16:7:7,0,210 1/1:0,24:24:36:395,36,0 1/1:2,12:14:18:193,18,0 +chr10 19780503 . A C 457.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.595;DP=151;Dels=0.00;FS=45.709;HaplotypeScore=8.8522;MLEAC=4;MLEAF=0.500;MQ=28.51;MQ0=0;MQRankSum=1.117;QD=3.03;ReadPosRankSum=0.408;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/1:35,12:47:99:249,0,533 0/1:36,4:40:45:45,0,536 0/1:40,8:48:99:142,0,359 0/1:13,3:16:64:64,0,104 +chr10 21074777 . C T 71.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.559;DP=116;Dels=0.01;FS=28.557;HaplotypeScore=9.6658;MLEAC=2;MLEAF=0.250;MQ=34.49;MQ0=0;MQRankSum=-3.813;QD=1.21;ReadPosRankSum=-0.913;SB=-9.437e-01 GT:AD:DP:GQ:PL 0/1:25,5:31:52:52,0,725 0/1:24,4:28:61:61,0,614 0/0:28,3:31:19:0,19,857 0/0:24,1:25:35:0,35,718 +chr10 21097504 . T C 150.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.292;DP=179;Dels=0.00;FS=126.286;HaplotypeScore=9.9971;MLEAC=4;MLEAF=0.500;MQ=31.97;MQ0=0;MQRankSum=-2.441;QD=0.84;ReadPosRankSum=0.705;SB=-4.105e-02 GT:AD:DP:GQ:PL 0/1:39,5:44:61:61,0,1033 0/1:40,6:46:38:38,0,883 0/1:51,7:58:73:73,0,1531 0/1:28,3:31:21:21,0,733 +chr10 21108377 rs1006363 C T 2865.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.272;DB;DP=262;Dels=0.00;FS=0.476;HaplotypeScore=3.6300;MLEAC=4;MLEAF=0.500;MQ=32.98;MQ0=0;MQRankSum=-0.291;QD=15.57;ReadPosRankSum=2.041;SB=-1.317e+03 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,171,2124 1/1:3,57:61:99:1869,118,0 0/1:41,25:66:99:692,0,1134 0/1:43,14:57:99:353,0,1233 +chr10 21115332 rs1409348 T C 255.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.069;DB;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.1663;MLEAC=1;MLEAF=0.125;MQ=29.15;MQ0=0;MQRankSum=0.693;QD=8.53;ReadPosRankSum=1.307;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,11:30:99:292,0,403 0/0:34,0:34:84:0,84,1013 0/0:42,0:42:93:0,93,1027 0/0:15,0:15:36:0,36,394 +chr10 21148584 rs4748729 C A 1429.90 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.166;DB;DP=72;Dels=0.00;FS=5.229;HaplotypeScore=2.2165;MLEAC=7;MLEAF=0.875;MQ=29.63;MQ0=0;MQRankSum=0.026;QD=19.86;ReadPosRankSum=1.115;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,10:27:99:271,0,483 1/1:3,21:24:27:621,27,0 1/1:2,15:17:45:489,45,0 1/1:1,3:4:9:93,9,0 +chr10 21806691 . T G 37.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.956;DP=162;Dels=0.01;FS=75.912;HaplotypeScore=2.2257;MLEAC=3;MLEAF=0.375;MQ=37.04;MQ0=0;MQRankSum=-3.713;QD=0.32;ReadPosRankSum=-0.795;SB=0.585 GT:AD:DP:GQ:PL 0/1:40,4:44:14:14,0,1269 0/1:41,5:46:45:45,0,1248 0/0:43,2:45:51:0,51,1098 0/1:23,3:26:21:21,0,592 +chr10 21903708 . C T 221.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.227;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.5259;MLEAC=4;MLEAF=0.500;MQ=30.19;MQ0=0;MQRankSum=-1.397;QD=2.74;ReadPosRankSum=0.750;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,6:27:99:102,0,515 0/1:14,5:19:99:101,0,401 0/1:26,2:28:13:13,0,475 0/1:4,3:7:40:48,0,40 +chr10 22209851 . T G 617.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.926;DP=113;Dels=0.04;FS=116.348;HaplotypeScore=7.3005;MLEAC=4;MLEAF=0.500;MQ=30.09;MQ0=0;MQRankSum=-1.404;QD=5.47;ReadPosRankSum=4.954;SB=-8.167e-01 GT:AD:DP:GQ:PL 0/1:23,7:30:99:170,0,329 0/1:23,6:30:99:110,0,367 0/1:27,10:38:99:203,0,512 0/1:5,6:11:58:177,0,58 +chr10 22453067 . G T 136.33 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.684;DP=19;Dels=0.00;FS=10.843;HaplotypeScore=5.9424;MLEAC=3;MLEAF=0.375;MQ=24.80;MQ0=0;MQRankSum=-0.241;QD=8.52;ReadPosRankSum=0.818;SB=-2.041e+00 GT:AD:DP:GQ:PL 0/1:2,2:4:16:53,0,16 0/1:3,2:5:14:14,0,55 0/1:2,5:7:8:110,0,8 0/0:3,0:3:3:0,3,32 +chr10 22606871 . T A 76.88 . AC=1;AF=0.167;AN=6;BaseQRankSum=-0.280;DP=114;Dels=0.02;FS=19.255;HaplotypeScore=13.9910;MLEAC=1;MLEAF=0.167;MQ=30.92;MQ0=0;MQRankSum=0.993;QD=2.65;ReadPosRankSum=-1.109;SB=-4.577e+00 GT:AD:DP:GQ:PL 0/0:40,0:40:57:0,57,599 0/1:24,5:29:99:111,0,255 0/0:36,2:38:4:0,4,468 ./. +chr10 23393100 . T A 240.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.796;DP=233;Dels=0.00;FS=69.141;HaplotypeScore=5.4049;MLEAC=2;MLEAF=0.250;MQ=35.07;MQ0=0;MQRankSum=-0.449;QD=2.13;ReadPosRankSum=-1.985;SB=-1.336e+00 GT:AD:DP:GQ:PL 0/0:53,2:55:71:0,71,1461 0/1:55,5:60:42:42,0,1299 0/0:60,5:65:4:0,4,1432 0/1:42,11:53:99:239,0,877 +chr10 24564627 . G A 65.27 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.278;DP=19;Dels=0.00;FS=2.963;HaplotypeScore=5.6676;MLEAC=5;MLEAF=0.833;MQ=20.00;MQ0=0;MQRankSum=2.520;QD=7.25;ReadPosRankSum=-0.678;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,3:7:9:78,9,0 0/0:7,0:7:3:0,3,22 ./. 1/1:1,1:2:3:27,3,0 +chr10 24831571 . T G 131.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.370;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.6360;MLEAC=3;MLEAF=0.375;MQ=30.45;MQ0=0;MQRankSum=-0.196;QD=3.20;ReadPosRankSum=2.938;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:12:0,12,124 0/1:10,3:13:65:65,0,90 0/1:19,4:23:93:93,0,224 0/1:4,1:5:16:16,0,49 +chr10 24874466 . G T 45.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=-1.531;DP=57;Dels=0.00;FS=11.530;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=11.99;MQ0=0;MQRankSum=2.105;QD=1.88;ReadPosRankSum=-1.913;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,2:10:3:37,3,0 ./. ./. 1/1:13,1:14:3:41,3,0 +chr10 24880502 . T C 122.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.113;DP=77;Dels=0.01;FS=2.599;HaplotypeScore=27.7993;MLEAC=3;MLEAF=0.375;MQ=20.58;MQ0=0;MQRankSum=2.009;QD=2.04;ReadPosRankSum=-2.099;SB=-2.503e+00 GT:AD:DP:GQ:PL 0/0:17,0:17:12:0,12,126 0/1:22,3:26:12:72,0,12 0/1:21,2:23:14:40,0,14 0/1:7,3:10:13:53,0,13 +chr10 26562658 . T C 98.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.259;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=1.4344;MLEAC=2;MLEAF=0.250;MQ=35.69;MQ0=0;MQRankSum=-0.989;QD=2.06;ReadPosRankSum=-0.547;SB=0.099 GT:AD:DP:GQ:PL 0/0:22,2:24:14:0,14,685 0/1:27,5:32:83:83,0,755 0/0:33,3:36:22:0,22,978 0/1:11,4:15:57:57,0,282 +chr10 26792062 . A C 68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.266;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.6869;MLEAC=2;MLEAF=0.250;MQ=38.35;MQ0=0;MQRankSum=2.953;QD=0.99;ReadPosRankSum=0.544;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:40,4:44:11:11,0,1206 0/0:40,2:42:57:0,57,1391 0/0:42,4:46:8:0,8,1306 0/1:21,4:25:97:97,0,476 +chr10 27031392 rs34974619 AGATT A 808.88 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.147;DB;DP=51;FS=0.000;HaplotypeScore=6.5673;MLEAC=2;MLEAF=0.250;MQ=26.24;MQ0=0;MQRankSum=-2.607;QD=23.11;ReadPosRankSum=-0.074;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/0:10,0:8:21:0,21,528 0/1:10,10:17:99:552,0,560 0/1:9,6:12:99:307,0,491 0/0:6,0:3:9:0,9,226 +chr10 27400995 . T A 66.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.952;DP=179;Dels=0.00;FS=30.515;HaplotypeScore=4.2802;MLEAC=3;MLEAF=0.375;MQ=24.93;MQ0=0;MQRankSum=2.264;QD=0.55;ReadPosRankSum=1.586;SB=-1.370e+00 GT:AD:DP:GQ:PL 0/1:45,5:51:90:90,0,537 0/1:49,2:53:11:11,0,515 0/0:55,3:58:10:0,10,567 0/1:15,1:17:6:6,0,199 +chr10 27455916 rs61849012 A G 63.21 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.676;DB;DP=21;Dels=0.00;FS=5.798;HaplotypeScore=2.1356;MLEAC=1;MLEAF=0.250;MQ=20.60;MQ0=0;MQRankSum=-0.470;QD=9.03;ReadPosRankSum=-1.098;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:12:0,12,109 0/1:1,5:7:15:96,0,15 ./. ./. +chr10 27538905 . G T 55.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.335;DP=256;Dels=0.00;FS=14.827;HaplotypeScore=1.2865;MLEAC=2;MLEAF=0.250;MQ=12.51;MQ0=0;MQRankSum=2.626;QD=0.41;ReadPosRankSum=-3.208;SB=0.687 GT:AD:DP:GQ:PL 0/0:54,2:56:6:0,6,62 0/1:70,3:73:55:55,0,70 0/0:66,0:66:15:0,15,149 0/1:58,3:61:41:41,0,102 +chr10 27687775 rs1638630 T C 2389.78 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.531;DB;DP=96;Dels=0.00;FS=9.529;HaplotypeScore=4.2896;MLEAC=7;MLEAF=0.875;MQ=32.33;MQ0=0;MQRankSum=1.766;QD=24.89;ReadPosRankSum=1.294;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:5,20:25:57:675,57,0 0/1:7,23:31:20:765,0,20 1/1:10,23:33:47:807,47,0 1/1:2,5:7:15:187,15,0 +chr10 27688188 . AG A 452.56 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.485;DP=56;FS=0.000;HaplotypeScore=8.2608;MLEAC=5;MLEAF=0.625;MQ=19.94;MQ0=0;MQRankSum=0.126;QD=8.08;ReadPosRankSum=-2.636;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:13,3:9:13:202,13,0 0/1:6,5:8:12:161,0,12 0/1:10,2:4:1:56,0,1 0/1:12,5:8:14:85,0,14 +chr10 27692099 rs2484179 A G 2824.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.718;DB;DP=207;Dels=0.00;FS=17.338;HaplotypeScore=1.7285;MLEAC=4;MLEAF=0.500;MQ=37.59;MQ0=0;MQRankSum=-1.936;QD=13.65;ReadPosRankSum=1.453;SB=-3.850e+02 GT:AD:DP:GQ:PL 0/1:29,23:52:99:774,0,792 0/1:41,23:64:99:708,0,1290 0/1:26,30:56:99:1045,0,735 0/1:23,12:35:99:340,0,513 +chr10 28223906 . A T 48.33 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.448;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8347;MLEAC=3;MLEAF=0.375;MQ=31.67;MQ0=0;MQRankSum=-2.739;QD=0.83;ReadPosRankSum=0.384;SB=-3.269e+01 GT:AD:DP:GQ:PL 0/0:13,0:13:15:0,15,192 0/1:17,4:22:29:29,0,395 0/1:28,2:31:1:1,0,576 0/1:3,2:5:33:58,0,33 +chr10 28911303 rs1265829 T C 42.01 . AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=34.79;MQ0=0;QD=21.01;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:41,3,0 ./. 1/1:0,1:1:3:34,3,0 +chr10 29839513 rs10159964 A G 130.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.900;DB;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.1659;MLEAC=3;MLEAF=0.375;MQ=36.91;MQ0=0;MQRankSum=-0.448;QD=4.84;ReadPosRankSum=0.448;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:36:0,36,500 0/1:7,2:9:61:61,0,103 0/1:5,2:7:65:65,0,116 0/1:9,2:11:48:48,0,296 +chr10 30978164 rs28363791 A G 53.01 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.727;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=26.64;MQ0=0;MQRankSum=0.727;QD=17.67;ReadPosRankSum=0.727;SB=-2.776e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:60,6,0 1/1:0,1:1:3:32,3,0 0/0:1,0:1:3:0,3,31 ./. +chr10 31005822 rs10763823 C T 390.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.850;DB;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=0.4939;MLEAC=8;MLEAF=1.00;MQ=19.82;MQ0=0;MQRankSum=0.559;QD=9.77;ReadPosRankSum=-0.215;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,5:7:6:58,6,0 1/1:3,9:13:15:149,15,0 1/1:3,11:14:21:190,21,0 1/1:3,2:5:3:32,3,0 +chr10 31133729 . T A 36.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.182;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=5.1589;MLEAC=4;MLEAF=0.500;MQ=24.82;MQ0=0;MQRankSum=-0.061;QD=1.84;ReadPosRankSum=0.667;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:28,3,0 0/1:10,1:11:4:4,0,172 0/0:11,0:11:6:0,6,53 0/1:4,2:6:13:46,0,13 +chr10 32128324 . AG A 220.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.965;DP=40;FS=0.000;HaplotypeScore=12.0396;MLEAC=4;MLEAF=0.500;MQ=16.97;MQ0=0;MQRankSum=0.471;QD=6.69;ReadPosRankSum=-0.471;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:5,3:3:2:52,0,2 0/1:12,0:5:34:34,0,87 0/1:6,6:7:23:184,0,23 0/0:7,0:1:3:0,3,19 +chr10 32337543 . C T 181.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.757;DP=104;Dels=0.00;FS=2.368;HaplotypeScore=6.1461;MLEAC=3;MLEAF=0.375;MQ=27.36;MQ0=0;MQRankSum=-1.880;QD=1.95;ReadPosRankSum=0.308;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,6:32:24:24,0,426 0/1:24,7:31:99:162,0,336 0/1:26,4:30:38:38,0,559 0/0:9,2:11:12:0,12,132 +chr10 32399394 rs2988087 G A 694.72 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.773;DB;DP=76;Dels=0.00;FS=4.827;HaplotypeScore=1.1524;MLEAC=7;MLEAF=0.875;MQ=22.71;MQ0=0;MQRankSum=0.093;QD=9.14;ReadPosRankSum=2.369;SB=-8.995e+01 GT:AD:DP:GQ:PL 0/1:18,7:25:24:24,0,244 1/1:2,14:16:21:226,21,0 1/1:2,12:14:24:251,24,0 0/1:1,20:21:2:237,0,2 +chr10 32745396 rs2244153 A G 1506.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.519;DB;DP=69;Dels=0.00;FS=27.259;HaplotypeScore=0.9613;MLEAC=8;MLEAF=1.00;MQ=25.98;MQ0=0;MQRankSum=2.805;QD=21.83;ReadPosRankSum=-0.554;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,12:20:33:350,33,0 1/1:1,22:23:63:700,63,0 1/1:5,16:21:39:358,39,0 1/1:1,4:5:12:137,12,0 +chr10 32860843 . TG T 159.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.375;DP=45;FS=0.000;HaplotypeScore=18.0004;MLEAC=4;MLEAF=0.500;MQ=20.72;MQ0=0;MQRankSum=-0.512;QD=3.55;ReadPosRankSum=-0.853;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:14,2:9:58:76,0,58 0/1:12,5:9:35:109,0,35 0/1:9,0:7:16:16,0,18 1/1:2,1:2:2:9,2,0 +chr10 32974969 rs1762526 A G 2945.97 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.631;DB;DP=97;Dels=0.01;FS=6.327;HaplotypeScore=1.4130;MLEAC=8;MLEAF=1.00;MQ=33.12;MQ0=0;MQRankSum=-0.165;QD=30.37;ReadPosRankSum=2.761;SB=-5.488e+02 GT:AD:DP:GQ:PL 1/1:3,20:23:1:642,1,0 1/1:4,29:33:61:1064,61,0 1/1:1,32:33:77:1133,77,0 1/1:2,5:7:12:145,12,0 +chr10 32978136 rs1763784 G A 676.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.411;DB;DP=59;Dels=0.02;FS=3.054;HaplotypeScore=0.2416;MLEAC=3;MLEAF=0.375;MQ=32.25;MQ0=0;MQRankSum=-2.876;QD=12.30;ReadPosRankSum=-0.296;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,10:17:99:267,0,229 0/1:12,7:19:99:183,0,311 0/1:9,9:19:99:269,0,280 0/0:3,0:3:9:0,9,98 +chr10 33190567 rs2153875 C A 691.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.769;DB;DP=88;Dels=0.03;FS=15.659;HaplotypeScore=1.8338;MLEAC=5;MLEAF=0.625;MQ=22.46;MQ0=0;MQRankSum=0.660;QD=7.86;ReadPosRankSum=0.732;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,6:19:89:89,0,139 1/1:3,19:22:42:424,42,0 0/1:18,9:27:99:156,0,163 0/1:13,4:17:68:68,0,153 +chr10 33346697 rs2756018 C G 591.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.505;DB;DP=161;Dels=0.00;FS=2.328;HaplotypeScore=1.2447;MLEAC=4;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=-1.796;QD=3.67;ReadPosRankSum=2.615;SB=-2.250e+02 GT:AD:DP:GQ:PL 0/1:27,8:35:33:33,0,575 0/1:34,15:49:99:183,0,575 0/1:28,12:40:99:169,0,619 0/1:24,13:37:99:249,0,255 +chr10 33346817 . C A 91.90 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.083;DP=40;Dels=0.03;FS=30.842;HaplotypeScore=1.5766;MLEAC=4;MLEAF=0.500;MQ=18.44;MQ0=0;MQRankSum=2.639;QD=2.30;ReadPosRankSum=0.028;SB=17.82 GT:AD:DP:GQ:PL 0/1:9,1:11:22:23,0,22 0/1:8,5:13:14:58,0,14 0/1:8,1:9:17:21,0,17 1/1:4,1:6:3:32,3,0 +chr10 33486614 . C A 30.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.243;DP=90;Dels=0.04;FS=1.869;HaplotypeScore=9.6763;MLEAC=2;MLEAF=0.250;MQ=26.55;MQ0=0;MQRankSum=0.043;QD=0.68;ReadPosRankSum=-0.931;SB=-2.626e+01 GT:AD:DP:GQ:PL 0/1:16,2:18:18:18,0,107 0/0:19,1:20:12:0,12,315 0/0:23,0:23:18:0,18,163 0/1:22,3:25:53:53,0,253 +chr10 33552696 rs7079053 A G 5903.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.141;DB;DP=182;Dels=0.00;FS=1.752;HaplotypeScore=4.4846;MLEAC=8;MLEAF=1.00;MQ=33.20;MQ0=0;MQRankSum=-2.526;QD=32.43;ReadPosRankSum=3.897;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:3,49:52:55:1578,55,0 1/1:1,44:45:92:1495,92,0 1/1:1,54:55:99:1878,123,0 1/1:1,29:30:49:952,49,0 +chr10 34625218 . G C 77.31 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.071;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=3.8312;MLEAC=2;MLEAF=0.250;MQ=35.80;MQ0=0;MQRankSum=-2.364;QD=1.76;ReadPosRankSum=2.364;SB=1.99 GT:AD:DP:GQ:PL 0/0:16,1:18:3:0,3,296 0/1:13,4:17:92:92,0,301 0/1:23,3:26:24:24,0,561 0/0:3,0:3:3:0,3,43 +chr10 34739127 . A T 37.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.751;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=2.7222;MLEAC=2;MLEAF=0.250;MQ=33.42;MQ0=0;MQRankSum=-2.647;QD=2.51;ReadPosRankSum=1.765;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:52:52,0,289 0/0:9,1:10:21:0,21,285 0/0:10,0:10:21:0,21,270 0/1:2,1:3:27:27,0,33 +chr10 35484949 rs1057108 T G 343.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.205;DB;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9722;MLEAC=1;MLEAF=0.125;MQ=38.12;MQ0=0;MQRankSum=-1.771;QD=11.47;ReadPosRankSum=1.056;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,12:30:99:380,0,606 0/0:45,0:45:99:0,129,1753 0/0:31,0:31:90:0,90,1221 0/0:27,0:27:78:0,78,983 +chr10 35495800 . C A 848.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.233;DP=150;Dels=0.02;FS=46.076;HaplotypeScore=12.9674;MLEAC=4;MLEAF=0.500;MQ=21.50;MQ0=0;MQRankSum=3.227;QD=5.66;ReadPosRankSum=4.458;SB=-1.168e-02 GT:AD:DP:GQ:PL 0/1:27,7:34:92:137,0,92 0/1:25,13:38:88:248,0,88 0/1:33,12:46:82:224,0,82 0/1:13,16:29:14:282,0,14 +chr10 37422895 . G A 55.67 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.441;DP=426;Dels=0.00;FS=11.971;HaplotypeScore=4.7221;MLEAC=4;MLEAF=0.500;MQ=12.93;MQ0=0;MQRankSum=2.647;QD=0.31;ReadPosRankSum=-1.952;SB=-3.919e+00 GT:AD:DP:GQ:PL 0/0:116,3:119:1:0,1,230 0/1:147,5:153:71:71,0,348 0/0:123,2:125:1:0,1,249 1/1:27,2:29:3:23,3,0 +chr10 37507885 . A T 46.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.150;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.0996;MLEAC=3;MLEAF=0.375;MQ=18.11;MQ0=0;MQRankSum=1.834;QD=0.62;ReadPosRankSum=0.705;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,5:24:35:55,0,35 0/1:24,2:27:19:19,0,103 0/1:21,3:24:14:14,0,59 0/0:6,0:6:6:0,6,66 +chr10 38466875 . A T 498.94 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.704;DP=121;Dels=0.01;FS=48.023;HaplotypeScore=1.6300;MLEAC=6;MLEAF=0.750;MQ=14.33;MQ0=0;MQRankSum=6.528;QD=4.12;ReadPosRankSum=-1.419;SB=-1.545e+01 GT:AD:DP:GQ:PL 0/1:29,4:33:78:100,0,78 1/1:26,9:35:27:261,27,0 0/1:30,6:36:74:125,0,74 1/1:14,2:16:6:58,6,0 +chr10 42396883 rs76709670 A C 327.74 . AC=6;AF=1.00;AN=6;DB;DP=82;Dels=0.00;FS=8.347;HaplotypeScore=0.3156;MLEAC=6;MLEAF=1.00;MQ=10.64;MQ0=0;QD=4.49;SB=-1.127e+02 GT:AD:DP:GQ:PL ./. 1/1:4,29:33:15:146,15,0 1/1:3,27:30:18:165,18,0 1/1:0,10:10:6:54,6,0 +chr10 42924520 . A T 42.60 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.797;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4026;MLEAC=3;MLEAF=0.750;MQ=20.41;MQ0=0;MQRankSum=2.616;QD=0.87;ReadPosRankSum=-0.023;SB=24.66 GT:AD:DP:GQ:PL 0/1:21,2:23:53:53,0,72 1/1:25,1:26:3:24,3,0 ./. ./. +chr10 43251776 . A C 208.40 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.562;DP=206;Dels=0.00;FS=11.017;HaplotypeScore=4.6021;MLEAC=2;MLEAF=0.250;MQ=20.91;MQ0=0;MQRankSum=2.343;QD=1.97;ReadPosRankSum=-0.402;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:42,9:52:99:146,0,273 0/0:41,4:45:1:0,1,210 0/1:47,6:53:99:102,0,391 0/0:54,1:55:45:0,45,476 +chr10 43292555 . T A 391.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.561;DP=151;Dels=0.00;FS=39.794;HaplotypeScore=0.9082;MLEAC=4;MLEAF=0.500;MQ=33.75;MQ0=0;MQRankSum=0.793;QD=2.59;ReadPosRankSum=-1.852;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,7:37:99:153,0,758 0/1:37,5:42:74:74,0,929 0/1:42,6:49:91:91,0,1050 0/1:18,5:23:99:116,0,326 +chr10 43533277 rs1864396 G A 44.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=7;Dels=0.00;FS=11.761;HaplotypeScore=0.5784;MLEAC=4;MLEAF=1.00;MQ=19.50;MQ0=0;MQRankSum=1.026;QD=8.80;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:41,3,0 ./. 1/1:1,1:2:3:36,3,0 ./. +chr10 43598106 . A G 47.06 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.977;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=9.6734;MLEAC=2;MLEAF=0.333;MQ=20.13;MQ0=0;MQRankSum=0.135;QD=2.94;ReadPosRankSum=0.244;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/0:6,0:7:3:0,3,32 0/1:5,3:8:26:28,0,26 0/1:6,2:8:20:56,0,20 +chr10 44538506 rs2051120 T G 31.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.00;FS=3.310;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.66;MQ0=0;MQRankSum=0.736;QD=10.59;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,2:3:6:63,6,0 ./. +chr10 45478092 rs870957 A G 102.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.204;DB;DP=71;Dels=0.00;FS=1.801;HaplotypeScore=2.3921;MLEAC=1;MLEAF=0.125;MQ=31.12;MQ0=0;MQRankSum=-0.095;QD=7.29;ReadPosRankSum=-1.266;SB=-4.200e+01 GT:AD:DP:GQ:PL 0/1:9,5:14:99:138,0,168 0/0:12,0:13:15:0,15,206 0/0:24,0:24:33:0,33,413 0/0:20,0:20:33:0,33,421 +chr10 45479570 . A C 36.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.247;DP=52;Dels=0.04;FS=0.000;HaplotypeScore=3.2589;MLEAC=2;MLEAF=0.250;MQ=27.72;MQ0=0;MQRankSum=-0.845;QD=1.22;ReadPosRankSum=-0.341;SB=-3.302e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:18:0,18,197 0/0:10,0:11:24:0,24,239 0/1:17,2:20:26:26,0,291 0/1:4,4:8:13:52,0,13 +chr10 45685642 . A T 52.47 . AC=3;AF=0.500;AN=6;BaseQRankSum=-3.392;DP=123;Dels=0.03;FS=46.683;HaplotypeScore=22.8407;MLEAC=3;MLEAF=0.500;MQ=10.07;MQ0=0;MQRankSum=3.602;QD=0.49;ReadPosRankSum=-0.189;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,3:38:16:16,0,81 0/1:29,3:32:17:17,0,21 0/1:31,4:35:37:58,0,37 ./. +chr10 45935953 . A T 349.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.187;DP=109;Dels=0.03;FS=75.371;HaplotypeScore=26.3968;MLEAC=4;MLEAF=0.500;MQ=23.78;MQ0=0;MQRankSum=2.935;QD=3.21;ReadPosRankSum=0.000;SB=-2.023e+00 GT:AD:DP:GQ:PL 0/1:17,4:21:99:112,0,111 0/1:23,5:28:89:102,0,89 0/1:24,5:30:99:106,0,172 0/1:24,3:27:30:72,0,30 +chr10 46952839 rs138917182 G A 77.28 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.066;DB;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=0.750;MQ=10.03;MQ0=0;MQRankSum=1.388;QD=1.68;ReadPosRankSum=0.172;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:17:17,0,38 1/1:5,5:10:6:48,6,0 0/1:11,4:15:23:23,0,25 1/1:7,2:9:3:32,3,0 +chr10 46967328 . A C 130.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.356;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.5545;MLEAC=4;MLEAF=0.500;MQ=19.52;MQ0=0;MQRankSum=3.365;QD=1.06;ReadPosRankSum=-4.160;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,3:33:38:38,0,129 0/1:23,4:27:52:68,0,52 0/1:39,3:42:24:24,0,133 0/1:19,2:21:35:43,0,35 +chr10 47088000 . GCA G 172.51 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.521;DP=47;FS=0.000;HaplotypeScore=24.8351;MLEAC=4;MLEAF=0.500;MQ=15.79;MQ0=0;MQRankSum=2.141;QD=4.66;ReadPosRankSum=0.521;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:13,3:9:28:155,0,28 1/1:4,1:1:3:13,3,0 0/1:8,3:4:56:56,0,59 0/0:8,1:3:6:0,6,58 +chr10 47106124 rs1106368 G A 82.67 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.731;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=19.80;MQ0=0;MQRankSum=0.731;QD=16.53;ReadPosRankSum=-0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:58,6,0 1/1:1,1:2:3:36,3,0 ./. 1/1:0,1:1:3:24,3,0 +chr10 47594672 . A C 36.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.573;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.2474;MLEAC=4;MLEAF=0.500;MQ=27.88;MQ0=0;MQRankSum=1.001;QD=2.59;ReadPosRankSum=1.203;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,1:3:19:28,0,19 0/0:3,0:3:6:0,6,56 0/1:3,1:4:18:21,0,18 1/1:6,1:7:3:30,3,0 +chr10 47595163 rs2014759 G A 233.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.140;DB;DP=57;Dels=0.00;FS=4.544;HaplotypeScore=2.3338;MLEAC=3;MLEAF=0.375;MQ=21.08;MQ0=0;MQRankSum=1.821;QD=5.69;ReadPosRankSum=1.225;SB=-6.971e+01 GT:AD:DP:GQ:PL 0/1:5,10:16:41:169,0,41 0/1:8,4:12:56:60,0,56 0/1:10,3:13:47:47,0,57 0/0:14,1:16:12:0,12,134 +chr10 47641951 rs4264102 C G 185.38 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.537;DB;DP=33;Dels=0.00;FS=13.692;HaplotypeScore=0.0000;MLEAC=6;MLEAF=0.750;MQ=17.15;MQ0=0;MQRankSum=1.895;QD=5.62;ReadPosRankSum=-0.379;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,6:9:19:87,0,19 1/1:4,4:8:3:32,3,0 1/1:1,5:6:3:23,3,0 0/1:4,6:10:19:85,0,19 +chr10 48388007 . C T 545.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.382;DP=79;Dels=0.00;FS=99.174;HaplotypeScore=6.4879;MLEAC=4;MLEAF=0.500;MQ=31.28;MQ0=0;MQRankSum=-3.358;QD=6.91;ReadPosRankSum=1.751;SB=-3.411e+00 GT:AD:DP:GQ:PL 0/1:7,5:12:99:144,0,141 0/1:14,8:22:99:169,0,253 0/1:16,9:25:99:214,0,313 0/1:17,3:20:61:61,0,306 +chr10 49609731 . T A 153.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.076;DP=106;Dels=0.00;FS=107.633;HaplotypeScore=1.4598;MLEAC=4;MLEAF=0.500;MQ=34.08;MQ0=0;MQRankSum=-2.854;QD=1.45;ReadPosRankSum=1.233;SB=-3.320e+00 GT:AD:DP:GQ:PL 0/1:28,5:33:61:61,0,691 0/1:30,6:36:81:81,0,665 0/1:27,3:30:5:5,0,653 0/1:5,2:7:48:48,0,129 +chr10 49944315 rs1871600 A T 142.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.289;DB;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.4940;MLEAC=1;MLEAF=0.125;MQ=36.41;MQ0=0;MQRankSum=0.518;QD=14.21;ReadPosRankSum=0.561;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:24:0,24,296 0/1:5,5:10:99:178,0,172 0/0:14,0:14:39:0,39,525 0/0:6,0:6:12:0,12,147 +chr10 50029293 . T A 393.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.921;DP=78;Dels=0.00;FS=5.406;HaplotypeScore=12.7753;MLEAC=4;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=1.938;QD=5.04;ReadPosRankSum=3.980;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:99:165,0,158 0/1:16,1:17:6:6,0,131 0/1:14,5:19:77:77,0,169 0/1:19,7:26:99:187,0,165 +chr10 50227632 . T C 59.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.107;DP=87;Dels=0.03;FS=4.842;HaplotypeScore=1.2250;MLEAC=2;MLEAF=0.250;MQ=36.24;MQ0=0;MQRankSum=-1.202;QD=1.42;ReadPosRankSum=-0.298;SB=-2.786e-02 GT:AD:DP:GQ:PL 0/1:21,2:23:19:19,0,410 0/0:19,1:20:16:0,16,467 0/0:24,0:24:45:0,45,549 0/1:14,3:17:82:82,0,245 +chr10 50678432 . C G 94.23 . AC=1;AF=0.125;AN=8;BaseQRankSum=-6.205;DP=364;Dels=0.00;FS=19.192;HaplotypeScore=1.6876;MLEAC=1;MLEAF=0.125;MQ=37.13;MQ0=0;MQRankSum=-6.059;QD=1.00;ReadPosRankSum=0.986;SB=-4.628e+00 GT:AD:DP:GQ:PL 0/0:101,6:107:99:0,142,3388 0/0:101,1:102:99:0,239,3316 0/1:81,13:94:99:130,0,2628 0/0:53,7:61:7:0,7,1737 +chr10 50723684 rs4253073 G A 346.84 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.368;DB;DP=128;Dels=0.01;FS=2.832;HaplotypeScore=0.7998;MLEAC=8;MLEAF=1.00;MQ=10.51;MQ0=0;MQRankSum=0.986;QD=2.71;ReadPosRankSum=1.494;SB=-1.279e+02 GT:AD:DP:GQ:PL 1/1:3,40:43:15:133,15,0 1/1:2,34:36:9:92,9,0 1/1:2,33:35:15:128,15,0 1/1:1,12:13:3:32,3,0 +chr10 50863083 rs12264845 A C 2515.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.384;DB;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=2.4164;MLEAC=7;MLEAF=0.875;MQ=33.31;MQ0=0;MQRankSum=-2.122;QD=28.26;ReadPosRankSum=0.779;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,6:14:99:177,0,210 1/1:0,24:24:63:791,63,0 1/1:4,25:29:69:872,69,0 1/1:1,20:21:60:720,60,0 +chr10 50870847 . A T 349.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.147;DP=195;Dels=0.02;FS=49.995;HaplotypeScore=6.3000;MLEAC=3;MLEAF=0.375;MQ=34.71;MQ0=0;MQRankSum=-2.081;QD=2.50;ReadPosRankSum=-0.027;SB=0.770 GT:AD:DP:GQ:PL 0/1:50,6:56:48:48,0,1295 0/1:34,8:42:99:151,0,717 0/0:52,3:55:27:0,27,1465 0/1:29,10:39:99:194,0,631 +chr10 50960209 rs1258184 G A 2039.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.231;DB;DP=175;Dels=0.02;FS=2.764;HaplotypeScore=7.4028;MLEAC=4;MLEAF=0.500;MQ=34.77;MQ0=0;MQRankSum=-2.699;QD=11.65;ReadPosRankSum=0.982;SB=-8.040e+02 GT:AD:DP:GQ:PL 0/1:30,11:41:99:282,0,931 0/1:19,22:41:99:708,0,593 0/1:21,22:43:99:632,0,639 0/1:31,16:47:99:460,0,874 +chr10 50964900 . A T 63.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.410;DP=143;Dels=0.00;FS=14.848;HaplotypeScore=3.0238;MLEAC=3;MLEAF=0.375;MQ=33.50;MQ0=0;MQRankSum=1.242;QD=0.60;ReadPosRankSum=-1.312;SB=-3.397e-01 GT:AD:DP:GQ:PL 0/1:27,3:30:31:31,0,577 0/1:28,2:30:12:12,0,610 0/1:40,5:45:63:63,0,987 0/0:36,1:37:37:0,37,693 +chr10 51549496 rs10993994 T C 4996.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.763;DB;DP=130;Dels=0.00;FS=29.100;HaplotypeScore=0.4864;MLEAC=8;MLEAF=1.00;MQ=39.11;MQ0=0;MQRankSum=2.939;QD=38.43;ReadPosRankSum=2.693;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,37:40:90:1477,90,0 1/1:3,39:42:83:1585,83,0 1/1:0,34:34:99:1394,102,0 1/1:1,13:14:39:540,39,0 +chr10 51620499 rs78584401 G A 35.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=-0.295;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=8.97;MQ0=0;MQRankSum=0.530;QD=2.33;ReadPosRankSum=0.766;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,5:9:3:36,3,0 ./. 1/1:2,4:6:3:32,3,0 ./. +chr10 51631508 . T C 137.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.443;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.4915;MLEAC=4;MLEAF=0.500;MQ=23.46;MQ0=0;MQRankSum=0.590;QD=4.05;ReadPosRankSum=1.033;SB=-5.474e+01 GT:AD:DP:GQ:PL 0/1:5,2:7:43:43,0,81 0/1:4,3:7:24:78,0,24 0/1:7,2:10:36:36,0,101 0/1:8,2:10:23:23,0,106 +chr10 51952509 . C A 43.77 . AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.8664;MLEAC=2;MLEAF=1.00;MQ=20.69;MQ0=0;QD=8.75;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:6:75,6,0 ./. ./. ./. +chr10 52390506 rs11006369 A T 200.95 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.147;DB;DP=147;Dels=0.00;FS=12.541;HaplotypeScore=6.6525;MLEAC=1;MLEAF=0.125;MQ=28.72;MQ0=0;MQRankSum=0.431;QD=6.09;ReadPosRankSum=1.283;SB=31.03 GT:AD:DP:GQ:PL 0/1:23,9:33:99:235,0,278 0/0:42,0:46:66:0,66,723 0/0:41,0:42:72:0,72,849 0/0:25,0:26:54:0,54,575 +chr10 52419481 . G C 37.06 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.320;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.8557;MLEAC=2;MLEAF=0.333;MQ=11.97;MQ0=0;MQRankSum=2.534;QD=0.62;ReadPosRankSum=-0.640;SB=-2.380e+01 GT:AD:DP:GQ:PL 0/0:25,0:26:3:0,3,39 0/1:28,1:29:24:24,0,124 0/1:29,2:31:49:50,0,49 ./. +chr10 52445127 . T C 80.96 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.997;DP=162;Dels=0.02;FS=57.167;HaplotypeScore=0.2167;MLEAC=4;MLEAF=0.500;MQ=10.95;MQ0=0;MQRankSum=0.350;QD=0.50;ReadPosRankSum=-0.337;SB=0.328 GT:AD:DP:GQ:PL 0/1:45,5:50:24:62,0,24 0/1:37,3:40:35:35,0,107 0/1:28,4:32:14:14,0,53 0/1:30,7:37:12:12,0,108 +chr10 53667391 . T G 329.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.613;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.4459;MLEAC=4;MLEAF=0.500;MQ=29.04;MQ0=0;MQRankSum=-1.566;QD=2.57;ReadPosRankSum=-0.463;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,5:34:89:89,0,322 0/1:27,5:32:95:95,0,383 0/1:32,5:37:80:80,0,506 0/1:20,5:25:99:108,0,190 +chr10 54050079 rs10762675 G A 2838.86 . AC=6;AF=0.750;AN=8;BaseQRankSum=4.246;DB;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9912;MLEAC=6;MLEAF=0.750;MQ=35.41;MQ0=0;MQRankSum=0.397;QD=22.35;ReadPosRankSum=1.943;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,14:40:99:397,0,777 0/1:15,28:43:99:951,0,390 1/1:1,36:37:82:1331,82,0 1/1:1,6:7:18:206,18,0 +chr10 54149352 rs7069178 T C 102.27 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.380;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=5;MLEAF=0.833;MQ=27.47;MQ0=0;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-1.380;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:71,6,0 0/1:3,1:4:30:30,0,36 ./. 1/1:0,1:1:3:40,3,0 +chr10 54528942 . A T 127.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.804;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=18.8400;MLEAC=4;MLEAF=0.500;MQ=23.63;MQ0=0;MQRankSum=-3.223;QD=2.20;ReadPosRankSum=1.841;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:2:2,0,201 0/1:12,3:15:30:30,0,133 0/1:13,4:18:85:85,0,131 0/1:4,4:8:30:51,0,30 +chr10 55568479 . G C 53.57 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.509;DP=200;Dels=0.00;FS=46.983;HaplotypeScore=2.2853;MLEAC=1;MLEAF=0.125;MQ=36.31;MQ0=0;MQRankSum=-3.356;QD=1.45;ReadPosRankSum=-0.958;SB=-6.030e+00 GT:AD:DP:GQ:PL 0/0:45,2:47:90:0,90,1530 0/0:51,4:55:3:0,3,1393 0/0:59,2:61:99:0,117,1948 0/1:31,6:37:89:89,0,874 +chr10 55583158 . T A 47.07 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.214;DP=119;Dels=0.00;FS=24.893;HaplotypeScore=5.3600;MLEAC=2;MLEAF=0.250;MQ=31.55;MQ0=0;MQRankSum=-0.511;QD=0.67;ReadPosRankSum=1.226;SB=-2.469e+00 GT:AD:DP:GQ:PL 0/1:29,2:31:3:3,0,401 0/0:39,0:39:60:0,60,709 0/1:33,5:39:81:81,0,523 0/0:10,0:10:12:0,12,102 +chr10 55583225 . C T 111.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.141;DP=51;Dels=0.00;FS=5.375;HaplotypeScore=1.4340;MLEAC=3;MLEAF=0.375;MQ=32.03;MQ0=0;MQRankSum=-0.707;QD=2.27;ReadPosRankSum=-0.627;SB=-3.688e-01 GT:AD:DP:GQ:PL 0/1:12,2:14:46:46,0,106 0/1:14,4:18:95:95,0,178 0/1:14,3:17:11:11,0,212 0/0:2,0:2:3:0,3,29 +chr10 55588422 . C T 77.10 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.919;DP=30;Dels=0.03;FS=5.051;HaplotypeScore=1.9105;MLEAC=4;MLEAF=0.667;MQ=22.11;MQ0=0;MQRankSum=-1.164;QD=2.75;ReadPosRankSum=1.164;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,4:7:6:54,6,0 0/1:5,3:8:18:18,0,20 0/1:9,3:12:45:45,0,50 ./. +chr10 55590942 rs59637951 TAGAC T 2361.52 . AC=4;AF=0.500;AN=8;BaseQRankSum=8.914;DB;DP=172;FS=14.005;HaplotypeScore=94.0923;MLEAC=4;MLEAF=0.500;MQ=35.16;MQ0=0;MQRankSum=-6.412;QD=23.15;RPA=2,1;RU=AGAC;ReadPosRankSum=2.196;SB=-6.600e+01;STR GT:AD:DP:GQ:PL 1/1:10,21:29:64:1302,64,0 0/0:70,0:66:99:0,177,3748 0/1:42,13:54:99:746,0,1838 0/1:9,5:14:99:371,0,359 +chr10 59575923 rs6481363 A G 359.02 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.162;DB;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.3325;MLEAC=8;MLEAF=1.00;MQ=29.94;MQ0=0;MQRankSum=0.820;QD=19.95;ReadPosRankSum=-1.714;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:6:82,6,0 1/1:2,5:7:6:71,6,0 1/1:1,5:6:15:170,15,0 1/1:0,2:2:6:74,6,0 +chr10 60148603 . T A 172 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.093;DP=80;Dels=0.04;FS=4.065;HaplotypeScore=27.9842;MLEAC=2;MLEAF=0.250;MQ=20.09;MQ0=0;MQRankSum=-1.090;QD=3.74;ReadPosRankSum=1.785;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,10:23:49:127,0,49 0/0:17,3:22:4:0,4,184 0/1:16,6:22:84:84,0,101 0/0:9,1:10:3:0,3,41 +chr10 60272973 . A G 38.01 . AC=4;AF=1.00;AN=4;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=25.96;MQ0=0;QD=19.01;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:35,3,0 ./. ./. 1/1:0,1:1:3:36,3,0 +chr10 61014264 . T A 62.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.486;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.5249;MLEAC=3;MLEAF=0.375;MQ=30.39;MQ0=0;MQRankSum=-1.260;QD=0.77;ReadPosRankSum=1.549;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:34,5:41:60:60,0,552 0/1:29,2:32:24:24,0,384 0/0:40,1:42:24:0,24,676 0/1:8,1:9:22:22,0,38 +chr10 61112172 . G C 361.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.408;DP=110;Dels=0.01;FS=20.140;HaplotypeScore=10.0452;MLEAC=3;MLEAF=0.375;MQ=31.10;MQ0=0;MQRankSum=-2.849;QD=4.26;ReadPosRankSum=2.039;SB=-2.035e-03 GT:AD:DP:GQ:PL 0/1:22,7:29:99:128,0,531 0/0:24,1:25:32:0,32,604 0/1:23,6:30:99:122,0,433 0/1:18,7:25:99:155,0,334 +chr10 61115580 . G A 65.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.697;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.2772;MLEAC=3;MLEAF=0.375;MQ=25.85;MQ0=0;MQRankSum=-1.485;QD=1.10;ReadPosRankSum=0.232;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,1:25:9:0,9,293 0/1:24,3:27:13:13,0,326 0/1:22,2:24:18:18,0,240 0/1:5,4:9:65:77,0,65 +chr10 61423994 . T A 75.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.137;DP=71;Dels=0.04;FS=0.000;HaplotypeScore=8.2664;MLEAC=4;MLEAF=0.500;MQ=24.43;MQ0=0;MQRankSum=0.511;QD=1.07;ReadPosRankSum=-1.764;SB=-8.452e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:29:29,0,180 0/1:11,1:12:14:14,0,71 0/1:24,5:29:52:52,0,265 0/1:9,1:10:23:23,0,64 +chr10 61665886 rs1171830 C A 895.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.495;DB;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=0.9682;MLEAC=5;MLEAF=0.625;MQ=36.19;MQ0=0;MQRankSum=-0.817;QD=11.48;ReadPosRankSum=-1.664;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:6,15:21:39:535,39,0 0/1:13,6:19:99:180,0,369 0/1:18,4:22:94:94,0,578 0/1:10,5:15:99:132,0,215 +chr10 61831744 rs10740006 A G 1411.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.715;DB;DP=216;Dels=0.00;FS=20.365;HaplotypeScore=1.3873;MLEAC=2;MLEAF=0.250;MQ=39.33;MQ0=0;MQRankSum=-0.467;QD=13.44;ReadPosRankSum=2.032;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:24,22:46:99:779,0,699 0/1:38,21:59:99:674,0,1274 0/0:69,0:69:99:0,196,2595 0/0:42,0:42:99:0,126,1694 +chr10 62553763 rs1871446 A G 4029.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.935;DB;DP=108;Dels=0.00;FS=15.563;HaplotypeScore=0.7495;MLEAC=8;MLEAF=1.00;MQ=36.86;MQ0=0;MQRankSum=2.131;QD=37.31;ReadPosRankSum=2.617;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,27:28:81:1051,81,0 1/1:1,30:31:58:1167,58,0 1/1:0,36:36:99:1387,108,0 1/1:1,12:13:2:424,2,0 +chr10 63982984 rs10740069 A G 2409.79 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.064;DB;DP=118;Dels=0.00;FS=9.752;HaplotypeScore=4.2368;MLEAC=7;MLEAF=0.875;MQ=32.64;MQ0=0;MQRankSum=2.892;QD=20.42;ReadPosRankSum=2.092;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,12:25:23:364,0,23 1/1:13,37:50:44:1275,44,0 1/1:14,23:37:63:703,63,0 1/1:2,4:6:12:112,12,0 +chr10 64148369 rs2893897 A G 685.63 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.261;DB;DP=28;Dels=0.00;FS=25.119;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=26.52;MQ0=0;MQRankSum=2.261;QD=24.49;ReadPosRankSum=1.684;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:3:26,3,0 1/1:1,5:6:15:173,15,0 1/1:0,10:10:30:328,30,0 1/1:2,7:9:18:197,18,0 +chr10 64573876 . A T 32.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.787;DP=110;Dels=0.00;FS=36.038;HaplotypeScore=8.1196;MLEAC=3;MLEAF=0.375;MQ=30.58;MQ0=0;MQRankSum=0.542;QD=0.39;ReadPosRankSum=0.577;SB=-3.684e-01 GT:AD:DP:GQ:PL 0/1:24,2:26:16:16,0,302 0/1:23,2:25:15:15,0,382 0/1:27,3:31:44:44,0,521 0/0:28,0:28:36:0,36,377 +chr10 64966550 . C A 374.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.090;DP=150;Dels=0.00;FS=83.450;HaplotypeScore=1.9688;MLEAC=4;MLEAF=0.500;MQ=34.95;MQ0=0;MQRankSum=-4.712;QD=2.50;ReadPosRankSum=2.673;SB=-1.204e-02 GT:AD:DP:GQ:PL 0/1:31,10:41:99:166,0,927 0/1:44,7:51:83:83,0,1285 0/1:40,8:48:99:126,0,1087 0/1:8,2:10:42:42,0,268 +chr10 64973498 . C G 38.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.418;DP=58;Dels=0.02;FS=12.954;HaplotypeScore=9.6594;MLEAC=3;MLEAF=0.375;MQ=22.91;MQ0=0;MQRankSum=1.454;QD=0.78;ReadPosRankSum=1.295;SB=17.49 GT:AD:DP:GQ:PL 0/1:11,2:13:26:26,0,159 0/1:16,2:19:48:48,0,134 0/1:15,1:16:3:3,0,161 0/0:8,0:9:3:0,3,43 +chr10 69696103 rs41307561 G T 48.28 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.248;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=3;MLEAF=0.500;MQ=23.65;MQ0=0;MQRankSum=0.248;QD=6.90;ReadPosRankSum=0.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:46:53,0,46 0/0:4,0:4:6:0,6,76 1/1:2,1:3:3:34,3,0 ./. +chr10 70179627 . T C 145.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.139;DP=171;Dels=0.00;FS=14.339;HaplotypeScore=18.3900;MLEAC=3;MLEAF=0.375;MQ=32.32;MQ0=0;MQRankSum=0.638;QD=1.31;ReadPosRankSum=1.465;SB=-3.090e-03 GT:AD:DP:GQ:PL 0/1:38,5:43:81:81,0,457 0/1:46,4:50:38:38,0,631 0/0:57,2:60:39:0,39,819 0/1:15,3:18:70:70,0,183 +chr10 70191701 . A T 579.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.941;DP=212;Dels=0.00;FS=50.482;HaplotypeScore=8.0908;MLEAC=4;MLEAF=0.500;MQ=30.27;MQ0=0;MQRankSum=-2.757;QD=2.73;ReadPosRankSum=3.947;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:59,11:70:99:167,0,716 0/1:45,10:55:99:220,0,510 0/1:56,10:66:99:148,0,500 0/1:15,5:20:87:87,0,190 +chr10 70225504 rs3758626 G T 553.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.039;DB;DP=150;Dels=0.01;FS=17.349;HaplotypeScore=4.4874;MLEAC=4;MLEAF=0.500;MQ=33.53;MQ0=0;MQRankSum=-2.911;QD=3.69;ReadPosRankSum=-0.265;SB=-3.829e+00 GT:AD:DP:GQ:PL 0/1:28,9:37:99:185,0,861 0/1:33,13:46:99:203,0,985 0/1:34,11:45:99:204,0,939 0/1:18,2:21:2:2,0,467 +chr10 70243264 . G A 44.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.649;DP=246;Dels=0.00;FS=4.841;HaplotypeScore=0.4998;MLEAC=1;MLEAF=0.125;MQ=38.12;MQ0=0;MQRankSum=-1.221;QD=1.96;ReadPosRankSum=-0.152;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,162,2093 0/0:87,1:88:99:0,209,2949 0/0:68,0:68:99:0,180,2303 0/1:19,4:23:81:81,0,443 +chr10 70515291 . A T 164.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.123;DP=58;Dels=0.02;FS=12.096;HaplotypeScore=14.5711;MLEAC=3;MLEAF=0.500;MQ=23.49;MQ0=0;MQRankSum=0.666;QD=3.49;ReadPosRankSum=1.850;SB=-1.010e-02 GT:AD:DP:GQ:PL 0/1:10,5:15:99:108,0,113 0/1:11,2:13:40:40,0,68 0/1:14,4:18:55:55,0,65 ./. +chr10 70696791 . T G 171.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.235;DP=134;Dels=0.00;FS=25.619;HaplotypeScore=3.1545;MLEAC=4;MLEAF=0.500;MQ=14.22;MQ0=0;MQRankSum=1.839;QD=1.28;ReadPosRankSum=-0.938;SB=-2.706e-02 GT:AD:DP:GQ:PL 0/1:33,6:39:89:89,0,89 0/1:28,6:34:32:32,0,83 0/1:29,3:32:22:22,0,30 0/1:22,7:29:71:71,0,92 +chr10 71000494 . T G 140.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.757;DP=80;Dels=0.00;FS=3.805;HaplotypeScore=9.9722;MLEAC=4;MLEAF=0.500;MQ=30.68;MQ0=0;MQRankSum=-1.285;QD=1.76;ReadPosRankSum=0.458;SB=-1.240e-02 GT:AD:DP:GQ:PL 0/1:15,1:16:20:20,0,110 0/1:17,2:19:35:35,0,191 0/1:18,4:22:56:56,0,278 0/1:20,3:23:72:72,0,146 +chr10 71192734 rs1867968 G A 90.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.187;DB;DP=185;Dels=0.00;FS=8.179;HaplotypeScore=4.1483;MLEAC=1;MLEAF=0.125;MQ=17.24;MQ0=0;MQRankSum=0.651;QD=1.82;ReadPosRankSum=0.888;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:34,16:50:99:127,0,221 0/0:46,0:46:33:0,33,282 0/0:44,0:44:42:0,42,355 0/0:45,0:45:48:0,48,439 +chr10 71243629 rs62625031 A T 299.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.839;DB;DP=152;Dels=0.00;FS=3.527;HaplotypeScore=2.4015;MLEAC=1;MLEAF=0.125;MQ=34.57;MQ0=0;MQRankSum=-0.940;QD=8.11;ReadPosRankSum=0.290;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/0:38,0:38:75:0,75,913 0/1:26,11:37:99:336,0,339 0/0:47,0:47:99:0,105,1366 0/0:30,0:30:66:0,66,866 +chr10 71332842 rs144643855 CTG C 399.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.198;DB;DP=39;FS=0.000;HaplotypeScore=5.6737;MLEAC=3;MLEAF=0.375;MQ=36.63;MQ0=0;MQRankSum=-1.751;QD=14.28;ReadPosRankSum=0.515;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/0:10,0:11:30:0,30,586 0/1:6,2:7:90:90,0,255 0/1:8,4:12:99:239,0,352 0/1:5,2:7:99:123,0,101 +chr10 72285707 . T C 129.16 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.196;DP=111;Dels=0.00;FS=35.306;HaplotypeScore=6.1244;MLEAC=4;MLEAF=0.500;MQ=32.63;MQ0=0;MQRankSum=-2.071;QD=1.16;ReadPosRankSum=2.226;SB=-5.183e-01 GT:AD:DP:GQ:PL 0/1:27,3:30:20:20,0,799 0/1:29,4:33:62:62,0,507 0/1:28,4:32:81:81,0,438 0/1:15,1:16:8:8,0,190 +chr10 72291052 . G C 36.05 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.508;DP=99;Dels=0.00;FS=24.959;HaplotypeScore=2.3222;MLEAC=2;MLEAF=0.250;MQ=31.23;MQ0=0;MQRankSum=-1.369;QD=0.74;ReadPosRankSum=0.696;SB=-1.918e+00 GT:AD:DP:GQ:PL 0/0:26,2:28:8:0,8,740 0/1:19,2:21:24:24,0,324 0/1:24,4:28:53:53,0,601 0/0:21,1:22:39:0,39,430 +chr10 72496559 . G T 46.57 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.152;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.8101;MLEAC=4;MLEAF=0.500;MQ=31.62;MQ0=0;MQRankSum=-0.598;QD=0.61;ReadPosRankSum=-2.593;SB=-1.192e-02 GT:AD:DP:GQ:PL 0/1:12,1:13:15:15,0,265 0/1:17,2:20:2:2,0,336 0/1:22,3:25:44:44,0,492 0/1:16,2:18:26:26,0,300 +chr10 72505010 . A G 255.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.318;DP=116;Dels=0.01;FS=79.360;HaplotypeScore=14.9831;MLEAC=4;MLEAF=0.500;MQ=27.37;MQ0=0;MQRankSum=-1.337;QD=2.20;ReadPosRankSum=0.666;SB=-1.239e-02 GT:AD:DP:GQ:PL 0/1:16,8:24:99:140,0,360 0/1:26,5:31:74:74,0,435 0/1:33,3:37:39:39,0,517 0/1:20,3:23:45:45,0,379 +chr10 72520330 rs10823615 A G 1170.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.256;DB;DP=156;Dels=0.01;FS=1.440;HaplotypeScore=6.1751;MLEAC=3;MLEAF=0.375;MQ=31.24;MQ0=0;MQRankSum=1.478;QD=9.84;ReadPosRankSum=1.858;SB=-6.030e+02 GT:AD:DP:GQ:PL 0/0:37,0:37:84:0,84,1039 0/1:22,12:34:99:325,0,525 0/1:29,17:46:99:516,0,633 0/1:24,14:38:99:373,0,357 +chr10 72520673 . A T 34.52 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.121;DP=39;Dels=0.00;FS=2.518;HaplotypeScore=1.5921;MLEAC=4;MLEAF=0.500;MQ=32.68;MQ0=0;MQRankSum=-0.832;QD=0.89;ReadPosRankSum=0.671;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:42:42,0,104 0/1:7,1:9:13:13,0,187 0/1:11,1:12:8:8,0,227 0/1:6,1:7:13:13,0,182 +chr10 72533910 rs7077672 C T 544.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.123;DB;DP=32;Dels=0.03;FS=24.150;HaplotypeScore=1.2182;MLEAC=7;MLEAF=0.875;MQ=26.27;MQ0=0;MQRankSum=2.277;QD=17.00;ReadPosRankSum=1.822;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:12:153,12,0 0/1:5,5:10:11:146,0,11 1/1:3,5:8:12:132,12,0 1/1:1,7:8:15:156,15,0 +chr10 72535021 . C A 31.04 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.450;DP=45;Dels=0.00;FS=2.455;HaplotypeScore=0.9838;MLEAC=2;MLEAF=0.250;MQ=32.61;MQ0=0;MQRankSum=-1.693;QD=1.55;ReadPosRankSum=-0.020;SB=-4.221e-01 GT:AD:DP:GQ:PL 0/1:5,3:8:64:64,0,124 0/1:11,1:12:5:5,0,152 0/0:10,0:10:30:0,30,378 0/0:14,1:15:9:0,9,414 +chr10 72633502 rs10823632 C T 498.14 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.606;DB;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.6000;MLEAC=7;MLEAF=0.875;MQ=29.68;MQ0=0;MQRankSum=0.000;QD=22.64;ReadPosRankSum=-0.118;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,6:7:18:224,18,0 0/1:4,2:6:30:64,0,30 1/1:0,4:4:12:146,12,0 1/1:2,3:5:9:108,9,0 +chr10 72636491 . G A 69.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.861;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.4972;MLEAC=2;MLEAF=0.250;MQ=36.55;MQ0=0;MQRankSum=-3.513;QD=1.42;ReadPosRankSum=-1.125;SB=-1.212e-02 GT:AD:DP:GQ:PL 0/0:28,2:30:17:0,17,831 0/1:25,4:29:44:44,0,793 0/0:38,0:38:96:0,96,1206 0/1:17,3:20:67:67,0,266 +chr10 73048356 . G T 127.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.329;DP=147;Dels=0.00;FS=139.663;HaplotypeScore=6.7912;MLEAC=1;MLEAF=0.125;MQ=32.46;MQ0=0;MQRankSum=-4.746;QD=4.70;ReadPosRankSum=-1.255;SB=-6.831e+00 GT:AD:DP:GQ:PL 0/0:31,4:35:20:0,20,725 0/0:39,5:44:27:0,27,1061 0/0:39,2:41:69:0,69,1085 0/1:18,8:27:99:163,0,352 +chr10 73053223 . C A 130.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.522;DP=109;Dels=0.00;FS=98.765;HaplotypeScore=9.2429;MLEAC=4;MLEAF=0.500;MQ=31.24;MQ0=0;MQRankSum=-2.371;QD=1.20;ReadPosRankSum=-3.098;SB=-1.290e+00 GT:AD:DP:GQ:PL 0/1:16,5:21:78:78,0,364 0/1:21,3:24:53:53,0,475 0/1:37,5:42:27:27,0,940 0/1:19,2:22:15:15,0,536 +chr10 73330727 . T C 167.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.886;DP=104;Dels=0.05;FS=3.990;HaplotypeScore=15.0688;MLEAC=5;MLEAF=0.625;MQ=19.13;MQ0=0;MQRankSum=2.084;QD=1.61;ReadPosRankSum=1.375;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:13,2:15:6:67,6,0 0/1:31,3:34:12:12,0,63 0/1:23,3:26:45:56,0,45 0/1:18,6:24:15:76,0,15 +chr10 73376940 . G A 63.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.147;DP=86;Dels=0.01;FS=2.435;HaplotypeScore=10.1863;MLEAC=2;MLEAF=0.250;MQ=29.85;MQ0=0;MQRankSum=-0.155;QD=1.67;ReadPosRankSum=-1.065;SB=-3.196e+01 GT:AD:DP:GQ:PL 0/0:21,0:21:39:0,39,435 0/1:15,3:18:55:55,0,201 0/0:27,0:27:60:0,60,630 0/1:15,3:19:50:50,0,235 +chr10 73476048 . G C 36.31 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.520;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.4614;MLEAC=4;MLEAF=0.500;MQ=29.22;MQ0=0;MQRankSum=-0.597;QD=4.03;ReadPosRankSum=0.000;SB=1.03 GT:AD:DP:GQ:PL 0/1:3,1:4:19:19,0,60 0/1:1,1:2:22:22,0,37 0/0:4,0:4:6:0,6,83 1/1:1,2:3:3:38,3,0 +chr10 73545645 . T A 57.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.478;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.6382;MLEAC=3;MLEAF=0.375;MQ=28.31;MQ0=0;MQRankSum=1.746;QD=2.23;ReadPosRankSum=-1.120;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:18:18,0,115 0/1:7,2:9:47:59,0,47 0/1:6,1:7:22:22,0,55 0/0:5,0:5:3:0,3,32 +chr10 73553261 . C A 120.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.258;DP=176;Dels=0.00;FS=52.748;HaplotypeScore=2.9850;MLEAC=3;MLEAF=0.375;MQ=37.74;MQ0=0;MQRankSum=-1.126;QD=0.89;ReadPosRankSum=0.151;SB=0.250 GT:AD:DP:GQ:PL 0/1:34,3:37:22:22,0,928 0/1:38,6:44:96:96,0,1047 0/1:48,6:54:45:45,0,1391 0/0:38,3:41:10:0,10,887 +chr10 73559498 . T A 57.88 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.089;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.3384;MLEAC=1;MLEAF=0.125;MQ=32.85;MQ0=0;MQRankSum=-4.009;QD=1.87;ReadPosRankSum=1.624;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,3:21:1:0,1,515 0/1:25,6:31:93:93,0,629 0/0:27,1:28:40:0,40,781 0/0:11,2:13:27:0,27,298 +chr10 73579405 rs3747860 C T 479.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.985;DB;DP=90;Dels=0.00;FS=11.822;HaplotypeScore=2.9496;MLEAC=3;MLEAF=0.375;MQ=33.44;MQ0=0;MQRankSum=1.106;QD=6.57;ReadPosRankSum=0.764;SB=-2.533e+02 GT:AD:DP:GQ:PL 0/1:26,2:28:23:23,0,543 0/0:17,0:17:45:0,45,515 0/1:15,11:26:99:361,0,294 0/1:14,5:19:99:139,0,400 +chr10 73581560 rs2070968 A T 403.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.479;DB;DP=115;Dels=0.00;FS=22.361;HaplotypeScore=6.2769;MLEAC=3;MLEAF=0.375;MQ=27.69;MQ0=0;MQRankSum=2.067;QD=4.86;ReadPosRankSum=1.393;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,9:28:99:289,0,384 0/0:32,0:32:54:0,54,711 0/1:16,6:22:99:145,0,212 0/1:30,3:33:12:12,0,324 +chr10 73950297 . G T 31.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.874;DP=70;Dels=0.00;FS=2.479;HaplotypeScore=0.4916;MLEAC=1;MLEAF=0.125;MQ=15.33;MQ0=0;MQRankSum=0.014;QD=3.18;ReadPosRankSum=-1.012;SB=3.41 GT:AD:DP:GQ:PL 1/1:7,2:9:6:72,6,0 0/0:22,1:23:12:0,12,134 0/0:20,0:20:6:0,6,80 0/0:16,1:17:9:0,9,85 +chr10 74104957 . C G 42.34 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.550;DP=17;Dels=0.00;FS=3.522;HaplotypeScore=1.8036;MLEAC=3;MLEAF=0.750;MQ=19.16;MQ0=0;MQRankSum=1.754;QD=3.53;ReadPosRankSum=0.550;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:4,1:5:3:27,3,0 0/1:5,2:7:17:50,0,17 +chr10 74268031 rs3793927 T C 1124.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.015;DB;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.2080;MLEAC=4;MLEAF=0.500;MQ=30.16;MQ0=0;MQRankSum=0.107;QD=9.87;ReadPosRankSum=2.322;SB=-3.040e+02 GT:AD:DP:GQ:PL 0/1:23,17:40:99:399,0,509 0/1:21,15:36:99:363,0,516 0/1:18,12:30:99:386,0,317 0/1:5,3:8:19:19,0,51 +chr10 75393746 . C A 52.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.963;DP=106;Dels=0.01;FS=36.027;HaplotypeScore=17.2007;MLEAC=2;MLEAF=0.250;MQ=28.10;MQ0=0;MQRankSum=0.881;QD=0.96;ReadPosRankSum=1.046;SB=-1.265e+00 GT:AD:DP:GQ:PL 0/0:32,2:34:2:0,2,520 0/1:22,3:26:56:56,0,249 0/1:23,3:27:36:36,0,293 0/0:17,0:18:24:0,24,277 +chr10 75457349 . G A 49.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.684;DP=305;Dels=0.00;FS=13.548;HaplotypeScore=2.4478;MLEAC=3;MLEAF=0.375;MQ=7.56;MQ0=0;MQRankSum=4.179;QD=0.22;ReadPosRankSum=-0.147;SB=-1.276e+01 GT:AD:DP:GQ:PL 0/0:76,0:76:9:0,9,89 0/1:73,3:76:21:21,0,22 0/1:81,1:82:12:12,0,86 0/1:68,3:71:59:59,0,121 +chr10 75533627 . T C 207.95 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.408;DP=68;Dels=0.03;FS=0.000;HaplotypeScore=4.4996;MLEAC=4;MLEAF=0.500;MQ=28.88;MQ0=0;MQRankSum=-0.693;QD=3.06;ReadPosRankSum=1.003;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,1:13:11:11,0,192 0/1:12,2:15:16:16,0,242 0/1:19,5:24:91:91,0,355 0/1:9,5:14:99:132,0,188 +chr10 75606972 . A C 343.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.865;DP=153;Dels=0.01;FS=199.994;HaplotypeScore=4.3507;MLEAC=4;MLEAF=0.500;MQ=32.76;MQ0=0;MQRankSum=-3.587;QD=2.25;ReadPosRankSum=1.331;SB=-3.731e+00 GT:AD:DP:GQ:PL 0/1:31,7:39:99:119,0,922 0/1:30,6:36:93:93,0,861 0/1:34,5:39:73:73,0,914 0/1:29,8:38:99:101,0,825 +chr10 75673056 . A G 89.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.666;DP=135;Dels=0.04;FS=144.800;HaplotypeScore=13.9203;MLEAC=3;MLEAF=0.375;MQ=34.67;MQ0=0;MQRankSum=-5.738;QD=0.85;ReadPosRankSum=-0.729;SB=0.692 GT:AD:DP:GQ:PL 0/1:29,5:34:34:34,0,904 0/1:23,6:29:31:31,0,670 0/1:31,8:39:68:68,0,919 0/0:25,3:28:18:0,18,695 +chr10 75673731 rs2227566 C T 1879.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.806;DB;DP=114;Dels=0.00;FS=2.929;HaplotypeScore=0.2492;MLEAC=5;MLEAF=0.625;MQ=34.72;MQ0=0;MQRankSum=-3.406;QD=16.49;ReadPosRankSum=1.449;SB=-4.500e+02 GT:AD:DP:GQ:PL 0/1:15,14:29:99:419,0,445 1/1:1,23:24:45:820,45,0 0/1:16,12:29:99:379,0,458 0/1:20,12:32:99:307,0,675 +chr10 75843100 rs1908339 T A 1357.02 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.172;DB;DP=87;Dels=0.02;FS=6.698;HaplotypeScore=4.4202;MLEAC=6;MLEAF=0.750;MQ=31.66;MQ0=0;MQRankSum=-2.209;QD=19.96;ReadPosRankSum=1.415;SB=3.22 GT:AD:DP:GQ:PL 1/1:7,11:18:33:372,33,0 0/0:18,1:19:20:0,20,540 1/1:10,20:30:60:686,60,0 1/1:5,12:18:30:351,30,0 +chr10 76736036 . A C 121 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.737;DP=159;Dels=0.01;FS=272.328;HaplotypeScore=2.0705;MLEAC=2;MLEAF=0.250;MQ=33.42;MQ0=0;MQRankSum=-7.238;QD=1.53;ReadPosRankSum=3.455;SB=-4.019e+00 GT:AD:DP:GQ:PL 0/0:29,6:35:5:0,5,1037 0/1:37,8:45:34:34,0,1261 0/0:37,8:45:7:0,7,1188 0/1:22,10:32:99:127,0,554 +chr10 76849020 . C G 48.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=-2.394;DP=88;Dels=0.00;FS=19.353;HaplotypeScore=0.3289;MLEAC=6;MLEAF=1.00;MQ=7.88;MQ0=0;MQRankSum=2.865;QD=0.79;ReadPosRankSum=-0.785;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:17,1:19:3:25,3,0 1/1:21,1:23:3:29,3,0 ./. 1/1:18,1:19:3:29,3,0 +chr10 76971007 . G A 35.06 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.919;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=4.6250;MLEAC=2;MLEAF=0.250;MQ=32.67;MQ0=0;MQRankSum=-1.006;QD=1.21;ReadPosRankSum=-2.299;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:27:0,27,327 0/1:16,3:19:58:58,0,362 0/0:18,1:19:3:0,3,320 0/1:8,1:9:17:17,0,127 +chr10 76971305 . T A 30.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.628;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=16.3108;MLEAC=3;MLEAF=0.375;MQ=26.57;MQ0=0;MQRankSum=1.882;QD=0.35;ReadPosRankSum=-0.282;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,2:29:3:3,0,347 0/0:30,1:31:1:0,1,329 0/1:29,3:32:38:38,0,318 0/1:25,2:27:28:28,0,195 +chr10 78674767 . G C 819.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.804;DP=383;Dels=0.00;FS=37.729;HaplotypeScore=19.4472;MLEAC=4;MLEAF=0.500;MQ=33.41;MQ0=0;MQRankSum=-10.344;QD=2.14;ReadPosRankSum=6.759;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:69,17:86:99:148,0,1794 0/1:59,24:83:99:233,0,1241 0/1:70,18:88:85:85,0,1922 0/1:102,24:126:99:396,0,1901 +chr10 78755281 . C A 104.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.503;DP=99;Dels=0.03;FS=9.980;HaplotypeScore=8.0783;MLEAC=4;MLEAF=0.500;MQ=29.54;MQ0=0;MQRankSum=-3.305;QD=1.06;ReadPosRankSum=0.686;SB=-2.699e-01 GT:AD:DP:GQ:PL 0/1:17,3:21:49:49,0,277 0/1:20,3:23:39:39,0,324 0/1:24,4:28:49:49,0,429 0/1:22,2:24:10:10,0,349 +chr10 78944731 . C G 563.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.544;DP=95;Dels=0.00;FS=2.955;HaplotypeScore=2.1827;MLEAC=4;MLEAF=0.500;MQ=33.12;MQ0=0;MQRankSum=-0.513;QD=5.93;ReadPosRankSum=2.092;SB=14.93 GT:AD:DP:GQ:PL 0/1:12,3:15:69:69,0,138 0/1:33,10:43:99:264,0,285 0/1:21,8:29:99:184,0,163 1/1:4,3:8:9:91,9,0 +chr10 79492970 rs12761718 C T 102.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.661;DB;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7458;MLEAC=2;MLEAF=0.250;MQ=16.16;MQ0=0;MQRankSum=-4.771;QD=1.68;ReadPosRankSum=-0.809;SB=0.597 GT:AD:DP:GQ:PL 0/0:14,13:27:9:0,9,83 0/0:16,13:29:6:0,6,73 0/1:23,12:35:49:49,0,102 0/1:13,13:26:94:94,0,116 +chr10 79569237 rs11593682 C A 57.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.386;DB;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0625;MLEAC=3;MLEAF=0.375;MQ=34.14;MQ0=0;MQRankSum=-1.483;QD=1.05;ReadPosRankSum=0.638;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,1:23:5:0,5,333 0/1:14,4:18:67:67,0,408 0/1:19,2:21:2:2,0,480 0/1:14,2:16:28:28,0,257 +chr10 79570744 . C A 30.12 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.505;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.4096;MLEAC=1;MLEAF=0.125;MQ=24.36;MQ0=0;MQRankSum=1.083;QD=7.53;ReadPosRankSum=0.072;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:30:65,0,30 0/0:4,0:4:3:0,3,34 0/0:6,0:6:9:0,9,114 0/0:8,1:9:6:0,6,53 +chr10 79581751 . T A 157.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.310;DP=205;Dels=0.00;FS=44.818;HaplotypeScore=8.6473;MLEAC=2;MLEAF=0.250;MQ=36.77;MQ0=0;MQRankSum=-0.951;QD=1.77;ReadPosRankSum=0.868;SB=1.01 GT:AD:DP:GQ:PL 0/1:38,7:46:99:132,0,878 0/0:55,2:59:73:0,73,1468 0/0:55,1:57:99:0,107,1501 0/1:37,5:42:67:67,0,894 +chr10 79616605 rs1248696 T C 371.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.727;DB;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9046;MLEAC=4;MLEAF=0.500;MQ=25.51;MQ0=0;MQRankSum=-1.409;QD=6.41;ReadPosRankSum=-1.427;SB=-1.683e+02 GT:AD:DP:GQ:PL 0/1:5,7:12:99:114,0,116 0/1:9,6:15:99:117,0,166 0/1:12,9:21:99:167,0,243 0/1:9,1:10:16:16,0,118 +chr10 79741387 . C G 114.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.177;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=2.4680;MLEAC=2;MLEAF=0.250;MQ=35.21;MQ0=0;MQRankSum=-3.042;QD=0.96;ReadPosRankSum=1.742;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:58,8:66:99:115,0,1295 0/0:74,3:77:88:0,88,1977 0/0:72,3:75:82:0,82,2010 0/1:48,5:53:41:41,0,1153 +chr10 79785948 . C A 63.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.611;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.2653;MLEAC=1;MLEAF=0.125;MQ=31.76;MQ0=0;MQRankSum=-0.681;QD=2.78;ReadPosRankSum=-2.279;SB=9.618e-03 GT:AD:DP:GQ:PL 0/0:23,0:23:39:0,39,449 0/0:22,1:23:36:0,36,361 0/0:19,0:19:36:0,36,438 0/1:19,4:23:99:100,0,257 +chr10 81056224 . A C 31.06 . AC=2;AF=0.250;AN=8;BaseQRankSum=-6.736;DP=212;Dels=0.01;FS=185.599;HaplotypeScore=13.2244;MLEAC=2;MLEAF=0.250;MQ=29.36;MQ0=0;MQRankSum=-3.571;QD=0.31;ReadPosRankSum=-0.261;SB=-1.490e+00 GT:AD:DP:GQ:PL 0/0:53,5:58:11:0,11,1301 0/1:42,9:51:55:55,0,985 0/0:46,5:52:35:0,35,1081 0/1:43,6:49:17:17,0,1030 +chr10 81065219 . A T 252.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.049;DP=130;Dels=0.01;FS=7.130;HaplotypeScore=6.3501;MLEAC=3;MLEAF=0.375;MQ=27.48;MQ0=0;MQRankSum=-1.451;QD=2.65;ReadPosRankSum=1.130;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,6:28:99:138,0,274 0/1:25,5:31:69:69,0,353 0/0:33,2:35:11:0,11,511 0/1:26,9:35:88:88,0,308 +chr10 81111376 . A T 48.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.285;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.5853;MLEAC=2;MLEAF=0.250;MQ=23.38;MQ0=0;MQRankSum=-0.130;QD=2.03;ReadPosRankSum=-0.181;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:9:0,9,98 0/1:9,5:14:63:75,0,63 0/0:13,0:13:12:0,12,147 0/1:8,1:10:14:14,0,71 +chr10 81850487 . G T 32.03 . AC=5;AF=0.625;AN=8;BaseQRankSum=-4.180;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=3.2421;MLEAC=4;MLEAF=0.500;MQ=15.84;MQ0=0;MQRankSum=1.626;QD=0.23;ReadPosRankSum=1.133;SB=16.93 GT:AD:DP:GQ:PL 0/1:35,2:37:18:18,0,49 0/1:43,5:48:18:18,0,46 0/1:33,2:35:10:10,0,102 1/1:13,2:16:3:28,3,0 +chr10 81923054 . C A 75.78 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.317;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=18.6921;MLEAC=4;MLEAF=0.500;MQ=20.87;MQ0=0;MQRankSum=1.781;QD=1.72;ReadPosRankSum=-1.293;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:19:19,0,36 0/1:8,2:10:17:17,0,39 0/1:14,3:17:60:60,0,130 0/1:5,2:8:16:22,0,16 +chr10 82007495 . T G 32.79 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.550;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=22.94;MQ0=0;MQRankSum=0.937;QD=3.28;ReadPosRankSum=1.300;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,25 ./. 1/1:2,2:4:6:52,6,0 0/1:5,1:6:19:20,0,19 +chr10 82012583 . G A 138.27 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.472;DP=158;Dels=0.00;FS=38.554;HaplotypeScore=6.4331;MLEAC=4;MLEAF=0.500;MQ=17.50;MQ0=0;MQRankSum=3.244;QD=0.88;ReadPosRankSum=-3.855;SB=-6.049e-01 GT:AD:DP:GQ:PL 0/1:35,4:39:24:24,0,160 0/1:36,4:40:7:7,0,232 0/1:33,5:38:61:61,0,190 0/1:35,6:41:88:88,0,266 +chr10 82040602 rs71481597 A G 168.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.579;DB;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.4828;MLEAC=1;MLEAF=0.125;MQ=37.58;MQ0=0;MQRankSum=-1.524;QD=6.50;ReadPosRankSum=0.481;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,8:26:99:205,0,613 0/0:20,0:20:51:0,51,707 0/0:27,0:27:66:0,66,889 0/0:24,0:24:66:0,66,888 +chr10 82402719 . C T 214.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.061;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.9924;MLEAC=4;MLEAF=0.500;MQ=30.55;MQ0=0;MQRankSum=-3.310;QD=1.66;ReadPosRankSum=2.986;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:34,4:38:38:38,0,725 0/1:27,7:34:99:139,0,424 0/1:40,3:43:18:18,0,616 0/1:11,3:14:62:62,0,131 +chr10 85982039 . C G 82.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.431;DP=100;Dels=0.01;FS=12.611;HaplotypeScore=14.9205;MLEAC=3;MLEAF=0.375;MQ=27.81;MQ0=0;MQRankSum=0.594;QD=1.05;ReadPosRankSum=-1.705;SB=-1.613e+01 GT:AD:DP:GQ:PL 0/1:26,3:29:49:49,0,483 0/0:20,1:21:12:0,12,375 0/1:24,3:27:44:44,0,316 0/1:20,2:22:32:32,0,278 +chr10 85985331 rs7898778 C T 140.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.157;DB;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9336;MLEAC=1;MLEAF=0.125;MQ=36.45;MQ0=0;MQRankSum=-0.220;QD=8.81;ReadPosRankSum=-0.787;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:81:0,81,1073 0/1:10,6:16:99:177,0,225 0/0:16,0:16:48:0,48,620 0/0:12,0:12:30:0,30,379 +chr10 85993717 rs3814207 G A 207.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.310;DB;DP=23;Dels=0.00;FS=2.935;HaplotypeScore=1.1430;MLEAC=3;MLEAF=0.375;MQ=31.45;MQ0=0;MQRankSum=0.803;QD=13.00;ReadPosRankSum=1.225;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:18:0,18,235 1/1:2,1:3:3:39,3,0 0/1:1,4:5:27:142,0,27 0/1:6,2:8:65:71,0,65 +chr10 87898549 . C T 64.98 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.541;DP=55;Dels=0.04;FS=0.000;HaplotypeScore=9.3965;MLEAC=2;MLEAF=0.250;MQ=24.82;MQ0=0;MQRankSum=-3.002;QD=1.97;ReadPosRankSum=3.748;SB=0.112 GT:AD:DP:GQ:PL 0/0:9,2:11:12:0,12,131 0/1:9,5:14:5:5,0,145 0/1:14,4:18:98:98,0,109 0/0:7,3:10:15:0,15,156 +chr10 88053572 rs2814312 C T 34.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=8;Dels=0.00;FS=8.451;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=16.46;MQ0=0;MQRankSum=0.736;QD=11.59;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:1,2:3:6:66,6,0 +chr10 88428453 . C G 32.35 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.807;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=4.6519;MLEAC=1;MLEAF=0.125;MQ=22.86;MQ0=0;MQRankSum=1.305;QD=1.04;ReadPosRankSum=-1.949;SB=-1.993e+00 GT:AD:DP:GQ:PL 0/0:8,0:8:21:0,21,223 0/1:15,1:16:1:1,0,211 0/0:18,0:18:21:0,21,235 0/1:12,3:15:67:67,0,90 +chr10 88441436 . T G 63.24 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.305;DP=76;Dels=0.01;FS=45.321;HaplotypeScore=6.7462;MLEAC=3;MLEAF=0.375;MQ=28.06;MQ0=0;MQRankSum=1.371;QD=1.58;ReadPosRankSum=-0.809;SB=21.60 GT:AD:DP:GQ:PL 0/1:15,1:17:17:17,0,216 0/0:13,1:16:0:0,0,285 0/0:16,0:19:39:0,39,465 0/1:17,3:23:85:85,0,161 +chr10 88719834 . G C 110.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.465;DP=44;Dels=0.02;FS=23.384;HaplotypeScore=1.1674;MLEAC=4;MLEAF=0.500;MQ=30.44;MQ0=0;MQRankSum=-1.617;QD=2.52;ReadPosRankSum=-2.797;SB=-7.932e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:66:66,0,184 0/1:10,2:12:36:36,0,178 0/1:7,2:9:35:35,0,207 0/1:10,1:11:16:16,0,169 +chr10 88939969 . A C 229.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.181;DP=214;Dels=0.00;FS=118.250;HaplotypeScore=1.5635;MLEAC=4;MLEAF=0.500;MQ=14.00;MQ0=0;MQRankSum=4.759;QD=1.07;ReadPosRankSum=1.075;SB=-4.120e-01 GT:AD:DP:GQ:PL 0/1:62,4:66:42:42,0,172 0/1:58,8:66:54:54,0,64 0/1:59,10:69:61:115,0,61 0/1:11,2:13:40:61,0,40 +chr10 90572814 . A G 109.29 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.621;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.9913;MLEAC=4;MLEAF=0.500;MQ=22.80;MQ0=0;MQRankSum=0.383;QD=1.68;ReadPosRankSum=1.387;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,5:15:50:96,0,50 0/1:17,1:18:7:7,0,109 0/1:15,4:19:27:27,0,188 0/1:12,1:13:21:21,0,78 +chr10 90575307 . G T 70.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.722;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.9669;MLEAC=2;MLEAF=0.250;MQ=31.26;MQ0=0;MQRankSum=0.029;QD=3.53;ReadPosRankSum=-0.895;SB=12.95 GT:AD:DP:GQ:PL 0/1:12,2:14:45:45,0,164 0/0:19,1:20:3:0,3,239 0/0:17,0:17:12:0,12,121 1/1:3,2:6:6:69,6,0 +chr10 90611287 . A T 118.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.832;DP=68;Dels=0.04;FS=2.707;HaplotypeScore=16.6519;MLEAC=3;MLEAF=0.375;MQ=25.32;MQ0=0;MQRankSum=-1.859;QD=1.98;ReadPosRankSum=1.442;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:37:37,0,62 0/1:12,4:17:60:60,0,131 0/1:16,4:22:63:63,0,74 0/0:7,0:7:3:0,3,23 +chr10 90697695 rs2119685 T C 364.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.096;DB;DP=19;Dels=0.00;FS=7.858;HaplotypeScore=0.0000;MLEAC=6;MLEAF=0.750;MQ=31.50;MQ0=0;MQRankSum=2.188;QD=20.22;ReadPosRankSum=0.041;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,36 0/1:3,4:7:65:139,0,65 1/1:4,3:7:9:122,9,0 1/1:0,4:4:12:149,12,0 +chr10 90732840 . A C 33.94 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.000;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6368;MLEAC=2;MLEAF=0.250;MQ=26.48;MQ0=0;MQRankSum=-0.469;QD=1.13;ReadPosRankSum=2.552;SB=3.98 GT:AD:DP:GQ:PL 0/0:24,0:25:21:0,21,207 0/0:27,0:27:36:0,36,341 0/1:19,3:23:59:59,0,89 0/1:6,1:7:16:16,0,76 +chr10 90762906 . G C 103.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.767;DP=148;Dels=0.01;FS=31.135;HaplotypeScore=10.4629;MLEAC=2;MLEAF=0.250;MQ=32.42;MQ0=0;MQRankSum=-4.072;QD=1.73;ReadPosRankSum=-1.036;SB=-1.037e-02 GT:AD:DP:GQ:PL 0/1:35,6:41:52:52,0,848 0/0:37,0:37:66:0,66,804 0/0:49,0:50:99:0,99,1276 0/1:11,8:19:93:93,0,273 +chr10 90898793 . A C 142.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.578;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=8.4268;MLEAC=3;MLEAF=0.375;MQ=27.52;MQ0=0;MQRankSum=-0.157;QD=1.68;ReadPosRankSum=1.537;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,3:25:21:21,0,492 0/1:23,5:28:79:79,0,344 0/1:27,4:31:86:86,0,469 0/0:11,0:11:18:0,18,218 +chr10 90975849 . C T 135.03 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.116;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=6.4251;MLEAC=2;MLEAF=0.333;MQ=24.61;MQ0=0;MQRankSum=0.424;QD=6.14;ReadPosRankSum=-0.039;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:56:83,0,56 0/0:6,0:6:3:0,3,31 0/1:6,4:10:74:89,0,74 ./. +chr10 91005397 . G A 264.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.283;DP=97;Dels=0.01;FS=24.835;HaplotypeScore=4.8227;MLEAC=4;MLEAF=0.500;MQ=30.65;MQ0=0;MQRankSum=-1.671;QD=2.73;ReadPosRankSum=1.331;SB=-4.024e-02 GT:AD:DP:GQ:PL 0/1:28,3:31:45:45,0,348 0/1:24,8:32:99:143,0,397 0/1:21,5:26:99:101,0,236 0/1:6,1:7:18:18,0,122 +chr10 91152428 . T A 90.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.362;DP=149;Dels=0.01;FS=192.572;HaplotypeScore=18.0362;MLEAC=3;MLEAF=0.375;MQ=29.39;MQ0=0;MQRankSum=-3.967;QD=0.88;ReadPosRankSum=1.515;SB=-1.668e+00 GT:AD:DP:GQ:PL 0/1:31,8:39:99:110,0,643 0/1:25,6:31:15:15,0,660 0/0:41,5:46:25:0,25,896 0/1:24,6:31:7:7,0,463 +chr10 91470660 rs7089473 T G 347.09 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.075;DB;DP=36;Dels=0.03;FS=5.544;HaplotypeScore=0.2080;MLEAC=4;MLEAF=0.500;MQ=33.77;MQ0=0;MQRankSum=-1.963;QD=13.88;ReadPosRankSum=1.178;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:33:0,33,419 0/1:3,3:6:66:101,0,66 0/1:6,7:13:99:197,0,174 1/1:2,3:5:9:96,9,0 +chr10 91479085 rs980520 G T 328.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.970;DB;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=0.9827;MLEAC=2;MLEAF=0.250;MQ=31.20;MQ0=0;MQRankSum=-2.360;QD=7.30;ReadPosRankSum=1.840;SB=25.52 GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,869 0/1:14,11:25:99:253,0,357 0/1:11,7:18:99:116,0,338 0/0:4,0:5:6:0,6,68 +chr10 91497368 . A G 65.15 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.211;DP=93;Dels=0.00;FS=50.471;HaplotypeScore=0.4895;MLEAC=2;MLEAF=0.250;MQ=29.28;MQ0=0;MQRankSum=-0.524;QD=1.86;ReadPosRankSum=0.367;SB=-1.930e+00 GT:AD:DP:GQ:PL 0/0:31,2:33:19:0,19,757 0/1:23,5:28:92:92,0,523 0/0:24,0:25:51:0,51,581 0/1:6,1:7:14:14,0,78 +chr10 91522707 rs12767644 C G 67.02 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.294;DB;DP=13;Dels=0.00;FS=2.932;HaplotypeScore=0.3856;MLEAC=3;MLEAF=0.500;MQ=28.73;MQ0=0;MQRankSum=0.740;QD=11.17;ReadPosRankSum=-0.185;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:9:0,9,126 1/1:0,2:2:6:75,6,0 0/1:3,1:4:29:33,0,29 ./. +chr10 92656130 . A C 42.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.297;DP=135;Dels=0.00;FS=2.347;HaplotypeScore=5.4755;MLEAC=1;MLEAF=0.125;MQ=33.87;MQ0=0;MQRankSum=-2.129;QD=1.72;ReadPosRankSum=-0.272;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/0:36,0:36:78:0,78,915 0/0:34,1:35:78:0,78,946 0/0:39,0:39:99:0,99,1158 0/1:21,4:25:79:79,0,332 +chr10 92662974 . T G 53.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.076;DP=59;Dels=0.00;FS=5.305;HaplotypeScore=7.9182;MLEAC=3;MLEAF=0.375;MQ=20.33;MQ0=0;MQRankSum=0.381;QD=1.10;ReadPosRankSum=0.737;SB=-3.315e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:17:27,0,17 0/1:15,4:19:41:47,0,41 0/1:14,2:16:21:21,0,87 0/0:10,0:10:3:0,3,31 +chr10 92676127 rs4933200 T C 136.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.139;DB;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.4330;MLEAC=1;MLEAF=0.125;MQ=40.35;MQ0=0;MQRankSum=1.800;QD=8.00;ReadPosRankSum=2.064;SB=7.98 GT:AD:DP:GQ:PL 0/1:12,5:17:99:172,0,335 0/0:8,0:8:24:0,24,313 0/0:17,0:17:48:0,48,667 0/0:8,0:9:21:0,21,280 +chr10 95082882 rs34048939 G A 1835.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.006;DB;DP=271;Dels=0.00;FS=3.251;HaplotypeScore=1.4837;MLEAC=3;MLEAF=0.375;MQ=38.93;MQ0=0;MQRankSum=-4.097;QD=9.61;ReadPosRankSum=0.586;SB=-7.460e+02 GT:AD:DP:GQ:PL 0/0:79,1:80:99:0,177,2798 0/1:44,23:68:99:715,0,1430 0/1:50,27:77:99:806,0,1471 0/1:33,13:46:99:358,0,996 +chr10 95123948 . C T 32 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.706;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7535;MLEAC=1;MLEAF=0.125;MQ=35.44;MQ0=0;MQRankSum=-0.262;QD=1.88;ReadPosRankSum=-0.525;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:39:0,39,491 0/0:14,0:14:30:0,30,377 0/0:20,0:20:57:0,57,724 0/1:14,3:17:68:68,0,440 +chr10 95132905 rs787647 C T 2613.03 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.735;DB;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9317;MLEAC=6;MLEAF=0.750;MQ=37.08;MQ0=0;MQRankSum=-2.094;QD=26.39;ReadPosRankSum=0.955;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,18:27:99:647,0,245 0/1:12,16:28:99:500,0,317 1/1:2,24:26:72:953,72,0 1/1:2,16:18:13:559,13,0 +chr10 95386648 . C T 40.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.875;DP=76;Dels=0.04;FS=0.000;HaplotypeScore=1.8490;MLEAC=3;MLEAF=0.375;MQ=25.51;MQ0=0;MQRankSum=0.436;QD=0.57;ReadPosRankSum=0.739;SB=0.986 GT:AD:DP:GQ:PL 0/1:18,3:21:52:52,0,194 0/1:23,1:25:6:6,0,106 0/1:20,2:22:23:23,0,193 0/0:5,0:5:6:0,6,53 +chr10 95422959 . C G 44.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.270;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2148;MLEAC=2;MLEAF=0.250;MQ=35.01;MQ0=0;MQRankSum=0.776;QD=1.54;ReadPosRankSum=-1.235;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:18:0,18,196 0/1:15,3:18:43:43,0,403 0/0:21,0:21:36:0,36,433 0/1:9,2:11:43:43,0,156 +chr10 95443688 rs8181435 C G 1109.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.229;DB;DP=54;Dels=0.00;FS=4.232;HaplotypeScore=0.6170;MLEAC=5;MLEAF=0.625;MQ=37.58;MQ0=0;MQRankSum=-1.973;QD=20.55;ReadPosRankSum=-0.064;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,9:18:99:305,0,279 1/1:0,17:17:51:634,51,0 0/1:11,6:17:99:178,0,370 0/1:1,1:2:26:38,0,26 +chr10 95458231 rs72808878 A G 136.26 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.713;DB;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.4557;MLEAC=2;MLEAF=0.333;MQ=27.10;MQ0=0;MQRankSum=-1.343;QD=5.68;ReadPosRankSum=-0.547;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:36:0,36,401 0/1:6,4:10:56:56,0,76 0/1:8,6:14:99:119,0,232 ./. +chr10 95459698 rs2275441 G C 153.70 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.000;DB;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=27.06;MQ0=0;MQRankSum=0.779;QD=17.08;ReadPosRankSum=-0.259;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,1:4:25:25,0,68 1/1:0,5:5:15:172,15,0 0/0:3,0:3:9:0,9,89 ./. +chr10 96201615 rs10882455 A G 297.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.655;DB;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9944;MLEAC=2;MLEAF=0.250;MQ=34.78;MQ0=0;MQRankSum=-2.440;QD=9.93;ReadPosRankSum=-1.440;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,8:19:99:234,0,308 0/1:7,4:11:99:105,0,213 0/0:15,0:15:45:0,45,595 0/0:4,0:4:9:0,9,117 +chr10 97158777 . G C 871.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.641;DP=209;Dels=0.00;FS=63.429;HaplotypeScore=3.2321;MLEAC=4;MLEAF=0.500;MQ=32.50;MQ0=0;MQRankSum=1.689;QD=4.17;ReadPosRankSum=2.551;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:44,7:51:99:122,0,986 0/1:34,7:41:99:146,0,732 0/1:57,12:69:99:279,0,1141 0/1:34,14:48:99:367,0,681 +chr10 97386604 . G C,T 140.40 . AC=4,2;AF=0.667,0.333;AN=6;BaseQRankSum=0.464;DP=49;Dels=0.00;FS=15.999;HaplotypeScore=14.6272;MLEAC=4,2;MLEAF=0.667,0.333;MQ=17.86;MQ0=0;MQRankSum=4.367;QD=3.90;ReadPosRankSum=-1.391;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/2:8,1,1:10:23:57,31,28,26,0,23 1/1:12,5,1:18:9:73,9,0,73,9,73 1/2:4,3,1:8:25:84,31,25,53,0,50 ./. +chr10 97387952 rs12414904 C G 32.66 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.589;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.6000;MLEAC=1;MLEAF=0.125;MQ=27.79;MQ0=0;MQRankSum=0.825;QD=10.89;ReadPosRankSum=0.589;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,28 0/1:1,2:3:26:67,0,26 0/0:3,0:3:3:0,3,39 0/0:3,0:3:6:0,6,82 +chr10 97440107 . CA C 99.42 . AC=1;AF=0.125;AN=8;BaseQRankSum=4.059;DP=112;FS=0.000;HaplotypeScore=70.0423;MLEAC=1;MLEAF=0.125;MQ=37.54;MQ0=0;MQRankSum=-4.071;QD=3.43;RPA=3,2;RU=A;ReadPosRankSum=-0.197;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:39,0:40:99:0,117,1586 0/1:19,7:27:99:144,0,361 0/0:29,2:30:29:0,29,955 0/0:11,1:11:4:0,4,376 +chr10 97919011 rs41291604 A G 2108.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.395;DB;DP=321;Dels=0.02;FS=3.601;HaplotypeScore=3.7803;MLEAC=3;MLEAF=0.375;MQ=35.32;MQ0=0;MQRankSum=-5.525;QD=9.25;ReadPosRankSum=2.207;SB=-9.850e+02 GT:AD:DP:GQ:PL 0/1:45,32:77:99:933,0,1414 0/0:93,0:93:99:0,271,3483 0/1:60,29:89:99:761,0,1931 0/1:37,19:56:99:458,0,994 +chr10 97959220 . A T 73.95 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.016;DP=60;Dels=0.02;FS=5.037;HaplotypeScore=9.1760;MLEAC=4;MLEAF=0.500;MQ=30.32;MQ0=0;MQRankSum=-0.773;QD=1.23;ReadPosRankSum=0.674;SB=-1.966e-01 GT:AD:DP:GQ:PL 0/1:12,1:13:11:11,0,187 0/1:13,1:14:16:16,0,135 0/1:15,3:18:48:48,0,293 0/1:12,2:14:41:41,0,127 +chr10 97987189 . G C 31.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.739;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=2.8794;MLEAC=1;MLEAF=0.125;MQ=32.45;MQ0=0;MQRankSum=-0.109;QD=0.76;ReadPosRankSum=-1.050;SB=-1.170e-02 GT:AD:DP:GQ:PL 0/0:37,1:38:42:0,42,755 0/1:38,4:42:68:68,0,609 0/0:43,0:43:81:0,81,873 0/0:35,0:35:57:0,57,632 +chr10 98064184 . G C 196.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.109;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2990;MLEAC=3;MLEAF=0.375;MQ=33.76;MQ0=0;MQRankSum=-1.458;QD=3.22;ReadPosRankSum=-1.060;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,1:21:4:0,4,341 0/1:20,2:22:37:37,0,215 0/1:15,3:18:87:87,0,212 0/1:16,4:21:99:114,0,149 +chr10 98129803 . C A 55.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.776;DP=68;Dels=0.00;FS=16.143;HaplotypeScore=7.8466;MLEAC=2;MLEAF=0.250;MQ=27.27;MQ0=0;MQRankSum=-1.155;QD=1.62;ReadPosRankSum=-0.335;SB=-4.136e+00 GT:AD:DP:GQ:PL 0/1:9,3:12:45:45,0,199 0/0:15,0:15:24:0,24,301 0/1:18,4:22:50:50,0,173 0/0:18,1:19:2:0,2,314 +chr10 98146654 rs12252784 C G 142.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.189;DB;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=34.63;MQ0=0;MQRankSum=-0.944;QD=7.94;ReadPosRankSum=0.175;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,7:18:99:179,0,363 0/0:16,0:16:39:0,39,489 0/0:23,0:23:60:0,60,732 0/0:26,0:26:72:0,72,858 +chr10 98287261 rs3789957 G C 1134.80 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.553;DB;DP=56;Dels=0.00;FS=6.204;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=31.83;MQ0=0;MQRankSum=1.634;QD=20.26;ReadPosRankSum=1.350;SB=-1.620e+02 GT:AD:DP:GQ:PL 0/1:17,5:22:99:106,0,421 1/1:2,16:18:48:601,48,0 1/1:1,13:14:36:448,36,0 1/1:1,1:2:3:23,3,0 +chr10 98287792 rs12779720 G T 480.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.326;DB;DP=132;Dels=0.00;FS=6.417;HaplotypeScore=0.7870;MLEAC=1;MLEAF=0.125;MQ=39.79;MQ0=0;MQRankSum=-1.096;QD=13.00;ReadPosRankSum=0.919;SB=-6.800e+01 GT:AD:DP:GQ:PL 0/1:22,15:37:99:517,0,607 0/0:35,0:35:96:0,96,1345 0/0:49,0:49:99:0,147,1921 0/0:11,0:11:30:0,30,392 +chr10 98380277 rs3748234 C T 2621.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.700;DB;DP=115;Dels=0.00;FS=5.690;HaplotypeScore=2.3150;MLEAC=7;MLEAF=0.875;MQ=33.86;MQ0=0;MQRankSum=1.733;QD=22.80;ReadPosRankSum=1.286;SB=-4.430e+02 GT:AD:DP:GQ:PL 0/1:25,10:35:99:265,0,639 1/1:5,23:28:43:812,43,0 1/1:5,24:30:46:926,46,0 1/1:3,19:22:54:663,54,0 +chr10 98408445 . C A 130.37 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.357;DP=86;Dels=0.00;FS=33.237;HaplotypeScore=1.7055;MLEAC=1;MLEAF=0.125;MQ=38.77;MQ0=0;MQRankSum=-1.885;QD=5.67;ReadPosRankSum=0.910;SB=-6.790e+00 GT:AD:DP:GQ:PL 0/0:22,2:24:5:0,5,640 0/0:15,0:15:33:0,33,432 0/0:23,1:24:26:0,26,677 0/1:17,6:23:99:166,0,522 +chr10 98708679 . A G 39.13 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.911;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=18.1728;MLEAC=2;MLEAF=0.333;MQ=15.52;MQ0=0;MQRankSum=1.757;QD=1.06;ReadPosRankSum=-2.277;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:19,2:21:20:20,0,21 0/1:13,3:16:38:56,0,38 0/0:7,0:7:3:0,3,22 +chr10 98715471 . A C 216.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.477;DP=173;Dels=0.00;FS=62.587;HaplotypeScore=1.4345;MLEAC=3;MLEAF=0.375;MQ=34.34;MQ0=0;MQRankSum=2.812;QD=1.66;ReadPosRankSum=0.411;SB=0.489 GT:AD:DP:GQ:PL 0/1:42,5:47:34:34,0,1048 0/0:40,3:43:12:0,12,898 0/1:42,8:50:99:163,0,1034 0/1:28,4:33:62:62,0,625 +chr10 98846928 rs1565494 G A 34.01 . AC=4;AF=1.00;AN=4;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=4;MLEAF=1.00;MQ=16.25;MQ0=0;QD=11.34;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:33,3,0 ./. ./. 1/1:1,1:2:3:34,3,0 +chr10 99019177 rs2253301 A G 2431.09 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.724;DB;DP=174;Dels=0.00;FS=1.395;HaplotypeScore=1.1733;MLEAC=5;MLEAF=0.625;MQ=37.39;MQ0=0;MQRankSum=0.293;QD=13.97;ReadPosRankSum=-0.429;SB=-6.235e+02 GT:AD:DP:GQ:PL 1/1:4,32:36:12:1188,12,0 0/1:38,15:53:99:432,0,1223 0/1:34,16:50:99:510,0,1120 0/1:24,11:35:99:346,0,642 +chr10 99118349 . C T 117.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.766;DP=202;Dels=0.00;FS=44.217;HaplotypeScore=23.0472;MLEAC=4;MLEAF=0.500;MQ=28.66;MQ0=0;MQRankSum=-3.893;QD=0.77;ReadPosRankSum=-0.699;SB=-2.120e+00 GT:AD:DP:GQ:PL 0/0:46,4:50:1:0,1,527 0/1:46,5:51:43:43,0,619 0/1:46,4:50:35:35,0,550 0/1:40,9:50:80:80,0,417 +chr10 99123457 rs11189165 A G 243.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.344;DB;DP=57;Dels=0.00;FS=5.173;HaplotypeScore=2.0755;MLEAC=3;MLEAF=0.375;MQ=36.00;MQ0=0;MQRankSum=-3.270;QD=4.98;ReadPosRankSum=0.464;SB=-7.699e+01 GT:AD:DP:GQ:PL 0/1:16,4:20:64:64,0,308 0/0:8,0:8:24:0,24,330 0/1:12,6:18:99:159,0,324 0/1:8,3:11:64:64,0,218 +chr10 99139600 rs11189174 C G 118.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.028;DB;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.0649;MLEAC=3;MLEAF=0.375;MQ=37.78;MQ0=0;MQRankSum=-2.156;QD=6.61;ReadPosRankSum=-0.644;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:48:48,0,63 0/0:11,0:11:33:0,33,473 0/1:8,1:9:17:17,0,142 0/1:2,3:5:65:97,0,65 +chr10 99160046 rs2297668 C T 1970.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.776;DB;DP=168;Dels=0.00;FS=5.246;HaplotypeScore=1.1236;MLEAC=3;MLEAF=0.375;MQ=36.27;MQ0=0;MQRankSum=-0.501;QD=15.89;ReadPosRankSum=1.787;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,20:42:99:673,0,508 0/0:43,1:44:88:0,88,1478 0/1:19,20:39:99:670,0,520 0/1:22,21:43:99:671,0,682 +chr10 99213486 . G A 222.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.012;DP=122;Dels=0.00;FS=9.492;HaplotypeScore=10.1496;MLEAC=4;MLEAF=0.500;MQ=28.06;MQ0=0;MQRankSum=-0.091;QD=1.82;ReadPosRankSum=1.868;SB=-3.263e-02 GT:AD:DP:GQ:PL 0/1:27,5:32:99:100,0,414 0/1:21,4:25:33:33,0,307 0/1:34,3:37:22:22,0,450 0/1:23,5:28:99:110,0,227 +chr10 99218524 . G T 393.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.820;DP=321;Dels=0.00;FS=170.319;HaplotypeScore=12.7388;MLEAC=4;MLEAF=0.500;MQ=35.86;MQ0=0;MQRankSum=-5.398;QD=1.23;ReadPosRankSum=1.708;SB=-1.027e-01 GT:AD:DP:GQ:PL 0/1:73,7:80:36:36,0,1847 0/1:62,13:75:99:231,0,1296 0/1:90,7:97:16:16,0,1920 0/1:58,9:68:99:153,0,1280 +chr10 99219727 . C G 32.06 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.951;DP=94;Dels=0.00;FS=7.134;HaplotypeScore=2.7278;MLEAC=1;MLEAF=0.125;MQ=35.93;MQ0=0;MQRankSum=-2.624;QD=1.53;ReadPosRankSum=2.039;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:39:0,39,448 0/0:17,1:18:13:0,13,415 0/0:29,2:31:38:0,38,731 0/1:16,5:21:68:68,0,352 +chr10 99340576 . C A 93.13 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.851;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.9373;MLEAC=5;MLEAF=0.833;MQ=22.15;MQ0=0;MQRankSum=1.453;QD=7.76;ReadPosRankSum=0.851;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,3:6:9:81,9,0 1/1:4,2:6:6:53,6,0 0/0:6,0:6:3:0,3,43 ./. +chr10 99416140 . A C 146.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.753;DP=149;Dels=0.02;FS=14.819;HaplotypeScore=6.9589;MLEAC=2;MLEAF=0.250;MQ=36.92;MQ0=0;MQRankSum=-1.235;QD=2.33;ReadPosRankSum=-1.067;SB=-1.076e+00 GT:AD:DP:GQ:PL 0/0:31,0:31:72:0,72,890 0/1:33,3:36:11:11,0,917 0/0:52,1:53:86:0,86,1528 0/1:19,7:26:99:176,0,391 +chr10 99642520 . C A 114.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.780;DP=85;Dels=0.00;FS=135.773;HaplotypeScore=2.3709;MLEAC=3;MLEAF=0.375;MQ=29.55;MQ0=0;MQRankSum=-0.846;QD=1.77;ReadPosRankSum=0.620;SB=5.99 GT:AD:DP:GQ:PL 0/1:16,3:19:49:49,0,373 0/1:21,4:25:72:72,0,382 0/1:17,4:21:37:37,0,531 0/0:18,2:20:36:0,36,416 +chr10 99968063 . C T 102.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.294;DP=125;Dels=0.02;FS=46.369;HaplotypeScore=8.0688;MLEAC=2;MLEAF=0.250;MQ=30.68;MQ0=0;MQRankSum=-0.294;QD=2.14;ReadPosRankSum=2.040;SB=-1.988e+00 GT:AD:DP:GQ:PL 0/1:32,5:37:99:125,0,426 0/0:29,2:32:5:0,5,406 0/0:42,1:43:24:0,24,726 0/1:10,1:11:18:18,0,100 +chr10 99968808 . G T 95.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.616;DP=225;Dels=0.00;FS=78.606;HaplotypeScore=9.7061;MLEAC=3;MLEAF=0.375;MQ=36.87;MQ0=0;MQRankSum=-2.894;QD=0.57;ReadPosRankSum=-1.033;SB=-5.996e-01 GT:AD:DP:GQ:PL 0/0:56,2:58:64:0,64,1647 0/1:64,8:72:69:69,0,1766 0/1:61,5:67:6:6,0,1892 0/1:24,4:28:62:62,0,614 +chr10 100143541 . G A 142.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.411;DP=263;Dels=0.00;FS=49.875;HaplotypeScore=5.3613;MLEAC=1;MLEAF=0.125;MQ=35.17;MQ0=0;MQRankSum=-3.889;QD=2.09;ReadPosRankSum=1.769;SB=-3.263e+00 GT:AD:DP:GQ:PL 0/0:57,2:60:93:0,93,1601 0/0:65,7:72:16:0,16,1715 0/0:59,3:62:48:0,48,1354 0/1:58,10:68:99:178,0,1258 +chr10 100182080 . T A 52.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.870;DP=86;Dels=0.00;FS=2.335;HaplotypeScore=3.0348;MLEAC=3;MLEAF=0.375;MQ=32.42;MQ0=0;MQRankSum=1.006;QD=0.80;ReadPosRankSum=1.449;SB=-2.735e-02 GT:AD:DP:GQ:PL 0/0:19,1:20:31:0,31,575 0/1:18,3:22:66:66,0,384 0/1:21,2:23:7:7,0,432 0/1:19,2:21:22:22,0,316 +chr10 101163420 . G A 301.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.550;DP=168;Dels=0.00;FS=73.331;HaplotypeScore=10.5321;MLEAC=4;MLEAF=0.500;MQ=29.38;MQ0=0;MQRankSum=-0.142;QD=1.80;ReadPosRankSum=-2.328;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/1:32,5:37:63:63,0,646 0/1:41,8:49:99:124,0,817 0/1:35,5:41:81:81,0,563 0/1:36,5:41:76:76,0,686 +chr10 101373626 . T A 84.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.573;DP=76;Dels=0.00;FS=16.166;HaplotypeScore=4.4618;MLEAC=4;MLEAF=0.500;MQ=33.60;MQ0=0;MQRankSum=-0.295;QD=1.11;ReadPosRankSum=1.007;SB=-1.116e+00 GT:AD:DP:GQ:PL 0/1:16,3:19:62:62,0,385 0/1:16,2:18:16:16,0,396 0/1:19,3:22:43:43,0,428 0/1:16,1:17:5:5,0,208 +chr10 101499393 . T A 71.28 . AC=3;AF=0.500;AN=6;BaseQRankSum=-2.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.5934;MLEAC=3;MLEAF=0.500;MQ=30.09;MQ0=0;MQRankSum=-0.952;QD=1.02;ReadPosRankSum=0.866;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:40:40,0,390 0/1:21,3:24:24:24,0,365 0/1:21,4:25:46:46,0,403 ./. +chr10 101572772 . C G 70.17 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.223;DP=166;Dels=0.00;FS=32.987;HaplotypeScore=1.8715;MLEAC=2;MLEAF=0.250;MQ=35.04;MQ0=0;MQRankSum=-1.488;QD=0.90;ReadPosRankSum=-2.083;SB=-2.578e+00 GT:AD:DP:GQ:PL 0/1:33,4:37:40:40,0,886 0/0:44,3:47:2:0,2,1045 0/0:38,3:41:16:0,16,876 0/1:36,5:41:70:70,0,660 +chr10 101591944 rs4148396 T C 2844.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.385;DB;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7199;MLEAC=7;MLEAF=0.875;MQ=36.93;MQ0=0;MQRankSum=-2.323;QD=26.84;ReadPosRankSum=-0.761;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,25:28:47:969,47,0 0/1:20,9:29:99:267,0,676 1/1:2,27:29:52:1006,52,0 1/1:3,17:20:51:647,51,0 +chr10 101596043 . A C 304.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.697;DP=148;Dels=0.03;FS=19.652;HaplotypeScore=3.8780;MLEAC=4;MLEAF=0.500;MQ=34.55;MQ0=0;MQRankSum=-5.731;QD=2.06;ReadPosRankSum=3.785;SB=-1.199e-02 GT:AD:DP:GQ:PL 0/1:26,4:30:60:60,0,494 0/1:27,5:32:42:42,0,571 0/1:37,9:46:99:134,0,796 0/1:27,8:35:99:111,0,534 +chr10 101606760 . C T 95.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-7.339;DP=325;Dels=0.00;FS=201.991;HaplotypeScore=0.7493;MLEAC=1;MLEAF=0.125;MQ=37.74;MQ0=0;MQRankSum=-5.334;QD=1.19;ReadPosRankSum=0.257;SB=-6.422e+00 GT:AD:DP:GQ:PL 0/0:75,4:79:86:0,86,2584 0/1:69,12:81:99:132,0,2318 0/0:84,6:90:74:0,74,2779 0/0:69,6:75:36:0,36,2234 +chr10 101643914 . T A 88.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.060;DP=129;Dels=0.00;FS=212.030;HaplotypeScore=3.0467;MLEAC=3;MLEAF=0.375;MQ=34.36;MQ0=0;MQRankSum=-3.746;QD=0.90;ReadPosRankSum=1.613;SB=0.328 GT:AD:DP:GQ:PL 0/1:26,6:32:34:34,0,749 0/1:28,9:37:71:71,0,804 0/1:25,4:29:26:26,0,764 0/0:27,2:31:12:0,12,790 +chr10 101715899 rs2862923 G A 6334.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.691;DB;DP=327;Dels=0.00;FS=4.413;HaplotypeScore=2.6747;MLEAC=5;MLEAF=0.625;MQ=37.40;MQ0=0;MQRankSum=2.830;QD=19.37;ReadPosRankSum=2.315;SB=-2.967e+03 GT:AD:DP:GQ:PL 1/1:2,80:82:99:3197,241,0 0/1:44,37:81:99:1165,0,1342 0/1:51,33:84:99:1098,0,1560 0/1:51,28:79:99:874,0,1523 +chr10 101824986 . T C 77.29 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.661;DP=93;Dels=0.00;FS=15.876;HaplotypeScore=11.3885;MLEAC=1;MLEAF=0.125;MQ=27.09;MQ0=0;MQRankSum=0.656;QD=3.22;ReadPosRankSum=-3.516;SB=-3.053e+00 GT:AD:DP:GQ:PL 0/0:16,1:17:11:0,11,335 0/0:21,2:23:15:0,15,399 0/0:27,2:29:9:0,9,586 0/1:19,5:24:99:113,0,245 +chr10 102056745 rs2278842 C T 219.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.018;DB;DP=87;Dels=0.00;FS=4.837;HaplotypeScore=0.4334;MLEAC=1;MLEAF=0.125;MQ=41.39;MQ0=0;MQRankSum=-2.431;QD=10.00;ReadPosRankSum=-0.245;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:14,8:22:99:256,0,530 0/0:28,0:28:81:0,81,1109 0/0:20,0:20:57:0,57,786 0/0:17,0:17:48:0,48,666 +chr10 102056969 rs113759546 TA T 3898 . AC=7;AF=0.875;AN=8;BaseQRankSum=5.004;DB;DP=145;FS=7.201;HaplotypeScore=184.0503;MLEAC=7;MLEAF=0.875;MQ=30.00;MQ0=0;MQRankSum=-4.591;QD=26.88;ReadPosRankSum=-0.169;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:24,7:30:99:369,0,684 1/1:22,17:32:86:1167,86,0 1/1:25,12:35:99:1355,100,0 1/1:18,17:34:24:1007,24,0 +chr10 102248950 rs3750719 C G 1222.18 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.918;DB;DP=59;Dels=0.02;FS=2.265;HaplotypeScore=1.4500;MLEAC=6;MLEAF=0.750;MQ=35.48;MQ0=0;MQRankSum=-0.798;QD=20.71;ReadPosRankSum=0.982;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:6,5:11:99:174,0,224 0/1:11,6:17:99:199,0,304 1/1:1,14:15:42:513,42,0 1/1:4,11:15:11:382,11,0 +chr10 102265847 rs2295774 A C 5221.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.954;DB;DP=252;Dels=0.01;FS=4.238;HaplotypeScore=10.2525;MLEAC=6;MLEAF=0.750;MQ=34.73;MQ0=0;MQRankSum=-2.092;QD=20.72;ReadPosRankSum=2.205;SB=-2.089e+03 GT:AD:DP:GQ:PL 0/1:38,31:69:99:860,0,1020 0/1:38,18:56:99:494,0,1104 1/1:10,61:71:99:2226,144,0 1/1:11,43:54:99:1641,129,0 +chr10 102569089 . C G 350.90 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.140;DP=24;Dels=0.00;FS=15.128;HaplotypeScore=4.6157;MLEAC=7;MLEAF=0.875;MQ=25.93;MQ0=0;MQRankSum=1.823;QD=14.62;ReadPosRankSum=1.030;SB=4.81 GT:AD:DP:GQ:PL 1/1:1,2:3:6:69,6,0 1/1:2,3:5:9:106,9,0 1/1:4,5:9:12:139,12,0 0/1:4,3:7:22:80,0,22 +chr10 102685584 rs12219858 G A 51.77 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.555;DB;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=36.66;MQ0=0;MQRankSum=-1.849;QD=6.47;ReadPosRankSum=-0.185;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:12:0,12,159 0/1:5,1:6:18:18,0,176 1/1:0,2:2:6:75,6,0 ./. +chr10 102716325 . T A 57.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.916;DP=40;Dels=0.00;FS=2.632;HaplotypeScore=7.1611;MLEAC=3;MLEAF=0.375;MQ=24.36;MQ0=0;MQRankSum=-1.692;QD=1.84;ReadPosRankSum=0.775;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:47:47,0,121 0/0:9,0:9:6:0,6,76 0/1:10,2:12:19:19,0,126 0/1:5,2:7:33:33,0,45 +chr10 102747363 rs3740484 G T 81 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.727;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=31.29;MQ0=0;MQRankSum=-0.727;QD=27.00;ReadPosRankSum=0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:80,6,0 0/0:1,0:1:3:0,3,43 1/1:0,1:1:3:40,3,0 ./. +chr10 102770327 rs807022 A G 30.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.00;MQ0=0;MQRankSum=0.736;QD=7.69;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,2:4:6:62,6,0 ./. ./. +chr10 102987440 . G T 46.28 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.592;DP=122;Dels=0.01;FS=2.286;HaplotypeScore=7.2455;MLEAC=2;MLEAF=0.250;MQ=37.72;MQ0=0;MQRankSum=-0.392;QD=0.86;ReadPosRankSum=-1.469;SB=13.06 GT:AD:DP:GQ:PL 0/0:28,2:32:3:0,3,760 0/0:30,2:35:8:0,8,819 0/1:27,2:29:7:7,0,570 0/1:20,3:25:77:77,0,264 +chr10 103286054 . T A 44.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.771;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.2500;MLEAC=3;MLEAF=0.375;MQ=34.32;MQ0=0;MQRankSum=-0.771;QD=2.11;ReadPosRankSum=1.663;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:19:19,0,104 0/1:6,2:8:43:43,0,116 0/0:8,0:8:12:0,12,128 0/1:6,1:7:25:25,0,115 +chr10 103347100 . G A 40.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.635;DP=311;Dels=0.03;FS=22.740;HaplotypeScore=9.3210;MLEAC=1;MLEAF=0.125;MQ=37.19;MQ0=0;MQRankSum=-5.647;QD=0.59;ReadPosRankSum=-1.856;SB=-4.911e+00 GT:AD:DP:GQ:PL 0/0:76,3:79:99:0,109,2537 0/0:69,5:74:37:0,37,2075 0/0:77,4:81:75:0,75,2403 0/1:61,8:69:77:77,0,1639 +chr10 103534527 . T G 32.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.341;DP=78;Dels=0.03;FS=7.187;HaplotypeScore=4.1787;MLEAC=3;MLEAF=0.375;MQ=35.67;MQ0=0;MQRankSum=-3.287;QD=0.91;ReadPosRankSum=-1.381;SB=-3.559e+00 GT:AD:DP:GQ:PL 0/0:16,2:18:14:0,14,549 0/1:20,3:23:38:38,0,605 0/0:21,2:23:0:0,0,662 0/1:10,2:12:34:34,0,190 +chr10 103588734 rs1562364 A G 202.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.695;DB;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.1506;MLEAC=1;MLEAF=0.125;MQ=35.88;MQ0=0;MQRankSum=-1.114;QD=14.50;ReadPosRankSum=0.371;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/0:19,0:19:48:0,48,649 0/1:6,8:14:73:239,0,73 0/0:16,0:16:45:0,45,619 0/0:21,0:21:45:0,45,607 +chr10 103988669 . T A 46.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.572;DP=217;Dels=0.00;FS=28.638;HaplotypeScore=4.7383;MLEAC=1;MLEAF=0.125;MQ=35.02;MQ0=0;MQRankSum=-2.364;QD=0.87;ReadPosRankSum=-1.511;SB=-3.576e+00 GT:AD:DP:GQ:PL 0/1:47,6:54:83:83,0,1250 0/0:55,2:57:78:0,78,1633 0/0:65,0:65:99:0,162,2053 0/0:37,3:41:36:0,36,1020 +chr10 104127228 . T G 74.14 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.815;DP=121;Dels=0.00;FS=6.994;HaplotypeScore=0.3418;MLEAC=1;MLEAF=0.125;MQ=38.22;MQ0=0;MQRankSum=-0.300;QD=2.97;ReadPosRankSum=-1.113;SB=-4.015e+00 GT:AD:DP:GQ:PL 0/0:26,1:27:38:0,38,760 0/0:30,2:32:9:0,9,792 0/0:36,1:37:62:0,62,1132 0/1:20,5:25:99:110,0,559 +chr10 104164734 . G A 78.99 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.740;DP=61;Dels=0.03;FS=28.800;HaplotypeScore=8.7355;MLEAC=3;MLEAF=0.375;MQ=26.91;MQ0=0;MQRankSum=-1.431;QD=3.76;ReadPosRankSum=-1.661;SB=-4.561e+00 GT:AD:DP:GQ:PL 0/1:8,2:10:46:46,0,67 0/0:20,1:21:3:0,3,317 0/0:15,2:18:1:0,1,243 0/1:7,3:10:14:71,0,14 +chr10 104231651 rs7081110 A G 1478.36 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.502;DB;DP=51;Dels=0.00;FS=25.567;HaplotypeScore=0.4988;MLEAC=8;MLEAF=1.00;MQ=30.08;MQ0=0;MQRankSum=2.502;QD=28.99;ReadPosRankSum=0.370;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,8:9:5:249,5,0 1/1:1,13:14:39:458,39,0 1/1:2,9:11:27:318,27,0 1/1:3,14:17:42:492,42,0 +chr10 104240928 . A T 50.69 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.059;DP=133;Dels=0.00;FS=12.349;HaplotypeScore=18.1920;MLEAC=4;MLEAF=0.500;MQ=19.56;MQ0=0;MQRankSum=1.163;QD=0.52;ReadPosRankSum=-0.240;SB=-2.491e+00 GT:AD:DP:GQ:PL 0/1:25,3:28:50:50,0,152 0/1:30,3:34:30:30,0,207 0/1:31,3:35:10:10,0,284 0/0:35,1:36:0:0,0,216 +chr10 104378847 . G C 34.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.096;DP=170;Dels=0.00;FS=52.810;HaplotypeScore=2.7558;MLEAC=1;MLEAF=0.125;MQ=31.81;MQ0=0;MQRankSum=-3.404;QD=0.81;ReadPosRankSum=0.227;SB=-7.362e+00 GT:AD:DP:GQ:PL 0/0:42,1:43:28:0,28,740 0/1:35,7:42:69:69,0,922 0/0:43,3:46:6:0,6,921 0/0:33,5:39:2:0,2,741 +chr10 105174985 . T G 126.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.662;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8626;MLEAC=4;MLEAF=0.500;MQ=32.20;MQ0=0;MQRankSum=-0.933;QD=2.30;ReadPosRankSum=-0.392;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:42:42,0,175 0/1:15,3:18:59:59,0,257 0/1:10,2:12:38:38,0,105 0/1:14,2:16:30:30,0,313 +chr10 105657258 . G C 30.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.253;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7306;MLEAC=2;MLEAF=0.250;MQ=33.57;MQ0=0;MQRankSum=1.111;QD=1.14;ReadPosRankSum=-1.150;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:27:0,27,305 0/1:12,1:14:10:10,0,207 0/0:12,1:13:0:0,0,256 0/1:10,2:13:59:59,0,129 +chr10 105812035 . C A 642.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.389;DP=149;Dels=0.00;FS=2.504;HaplotypeScore=1.6008;MLEAC=4;MLEAF=0.500;MQ=34.12;MQ0=0;MQRankSum=2.586;QD=4.31;ReadPosRankSum=1.999;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,6:32:99:139,0,286 0/1:30,4:34:99:126,0,250 0/1:34,8:42:99:189,0,323 0/1:33,8:41:99:231,0,365 +chr10 105830278 . T C 45.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.668;DP=200;Dels=0.00;FS=69.055;HaplotypeScore=5.0940;MLEAC=1;MLEAF=0.125;MQ=37.78;MQ0=0;MQRankSum=-1.311;QD=1.05;ReadPosRankSum=-2.451;SB=-5.177e+00 GT:AD:DP:GQ:PL 0/0:43,1:44:77:0,77,1384 0/1:39,5:44:82:82,0,1105 0/0:52,3:55:43:0,43,1463 0/0:54,2:57:55:0,55,1403 +chr10 108432828 rs11193010 C T 254.52 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.539;DB;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.2458;MLEAC=4;MLEAF=0.500;MQ=25.53;MQ0=0;MQRankSum=-0.041;QD=9.43;ReadPosRankSum=-0.539;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:18:207,18,0 0/1:7,2:9:46:46,0,94 0/1:6,3:9:48:48,0,127 0/0:3,1:4:6:0,6,65 +chr10 111288508 . T A 300.31 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.196;DP=55;Dels=0.00;FS=2.235;HaplotypeScore=1.4805;MLEAC=4;MLEAF=0.500;MQ=29.01;MQ0=0;MQRankSum=-0.546;QD=7.32;ReadPosRankSum=1.200;SB=12.20 GT:AD:DP:GQ:PL 0/1:11,3:14:72:72,0,137 0/0:12,1:14:15:0,15,175 0/1:13,4:18:20:113,0,20 1/1:2,6:9:15:163,15,0 +chr10 112540683 . G T 41.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.055;DP=82;Dels=0.04;FS=43.077;HaplotypeScore=13.2666;MLEAC=4;MLEAF=0.500;MQ=21.95;MQ0=0;MQRankSum=0.033;QD=0.51;ReadPosRankSum=-1.272;SB=-2.601e+00 GT:AD:DP:GQ:PL 0/1:16,3:20:35:35,0,222 0/1:12,2:15:31:31,0,185 0/1:18,2:20:12:12,0,322 0/1:23,1:24:5:5,0,161 +chr10 112579786 . C G 330.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.881;DP=93;Dels=0.00;FS=15.631;HaplotypeScore=3.5411;MLEAC=4;MLEAF=0.500;MQ=24.88;MQ0=0;MQRankSum=0.289;QD=3.55;ReadPosRankSum=4.681;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:14,4:18:71:71,0,188 0/1:15,3:18:57:57,0,217 0/1:25,6:31:99:99,0,209 0/1:18,8:26:99:146,0,141 +chr10 112839188 . T C 149.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.932;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.8741;MLEAC=3;MLEAF=0.375;MQ=24.01;MQ0=0;MQRankSum=2.754;QD=3.19;ReadPosRankSum=-1.510;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:62:62,0,253 0/1:11,1:12:20:20,0,129 0/0:14,0:14:18:0,18,155 0/1:11,5:16:88:111,0,88 +chr10 113924322 . G A 231.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.234;DP=104;Dels=0.02;FS=91.465;HaplotypeScore=15.9638;MLEAC=4;MLEAF=0.500;MQ=32.30;MQ0=0;MQRankSum=-4.319;QD=2.23;ReadPosRankSum=1.887;SB=-2.080e+00 GT:AD:DP:GQ:PL 0/1:22,7:29:99:150,0,358 0/1:26,8:35:70:70,0,601 0/1:26,3:31:6:6,0,501 0/1:5,2:7:33:47,0,33 +chr10 114918543 . A T 60.28 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.628;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4307;MLEAC=2;MLEAF=0.333;MQ=23.84;MQ0=0;MQRankSum=0.597;QD=2.01;ReadPosRankSum=-2.534;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:66:66,0,143 0/0:17,1:19:27:0,27,298 0/1:10,2:12:33:33,0,164 ./. +chr10 115406851 . A G 56.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.299;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.2257;MLEAC=3;MLEAF=0.375;MQ=33.40;MQ0=0;MQRankSum=-0.276;QD=1.12;ReadPosRankSum=0.576;SB=-1.189e-02 GT:AD:DP:GQ:PL 0/1:13,1:14:10:10,0,98 0/1:15,2:17:41:41,0,231 0/0:23,1:24:8:0,8,425 0/1:16,3:19:47:47,0,355 +chr10 115412793 rs3737322 A G 673.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.017;DB;DP=171;Dels=0.00;FS=11.134;HaplotypeScore=0.9969;MLEAC=1;MLEAF=0.125;MQ=36.35;MQ0=0;MQRankSum=1.089;QD=15.32;ReadPosRankSum=2.295;SB=-1.690e+02 GT:AD:DP:GQ:PL 0/1:23,21:44:99:710,0,796 0/0:42,0:42:99:0,117,1456 0/0:51,0:51:99:0,138,1724 0/0:34,0:34:99:0,99,1258 +chr10 115417252 . T A 402.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.201;DP=60;Dels=0.00;FS=29.318;HaplotypeScore=3.6827;MLEAC=4;MLEAF=0.500;MQ=28.41;MQ0=0;MQRankSum=-0.848;QD=6.71;ReadPosRankSum=1.718;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,6:19:99:148,0,137 0/1:12,3:15:64:64,0,225 0/1:11,9:21:78:210,0,78 0/1:4,1:5:23:23,0,57 +chr10 115529490 . C T 104.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.557;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.7070;MLEAC=3;MLEAF=0.375;MQ=30.29;MQ0=0;MQRankSum=-2.579;QD=0.74;ReadPosRankSum=-1.167;SB=-1.202e+01 GT:AD:DP:GQ:PL 0/0:37,3:40:6:0,6,952 0/1:41,6:47:16:16,0,1030 0/1:40,5:45:40:40,0,855 0/1:40,8:48:90:90,0,817 +chr10 115608962 . T A 93.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.511;DP=195;Dels=0.00;FS=39.011;HaplotypeScore=7.6664;MLEAC=3;MLEAF=0.375;MQ=35.10;MQ0=0;MQRankSum=-4.111;QD=0.75;ReadPosRankSum=2.767;SB=-1.964e+00 GT:AD:DP:GQ:PL 0/1:47,6:53:51:51,0,1107 0/0:68,2:70:99:0,104,1779 0/1:52,7:59:80:80,0,1353 0/1:11,2:13:4:4,0,280 +chr10 115609825 . G A 153.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.435;DP=137;Dels=0.01;FS=54.306;HaplotypeScore=7.4129;MLEAC=3;MLEAF=0.375;MQ=29.56;MQ0=0;MQRankSum=-1.642;QD=1.57;ReadPosRankSum=3.025;SB=0.920 GT:AD:DP:GQ:PL 0/1:34,4:38:59:59,0,544 0/1:36,6:42:77:77,0,526 0/0:36,1:38:34:0,34,576 0/1:14,4:18:61:61,0,163 +chr10 116048643 . G A 169.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.748;DP=69;Dels=0.01;FS=8.105;HaplotypeScore=6.4854;MLEAC=3;MLEAF=0.375;MQ=26.83;MQ0=0;MQRankSum=0.336;QD=3.19;ReadPosRankSum=1.430;SB=-3.199e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:70:70,0,88 0/1:16,1:17:24:24,0,126 0/1:16,5:22:99:118,0,212 0/0:14,1:15:12:0,12,124 +chr10 116196150 . A G 53.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.826;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=11.0928;MLEAC=3;MLEAF=0.375;MQ=22.59;MQ0=0;MQRankSum=1.749;QD=0.98;ReadPosRankSum=-2.336;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:12:0,12,126 0/1:20,1:21:10:10,0,150 0/1:14,2:16:31:31,0,101 0/1:15,3:18:55:55,0,203 +chr10 116417757 . T G 31.63 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.821;DP=125;Dels=0.01;FS=15.507;HaplotypeScore=14.6118;MLEAC=3;MLEAF=0.375;MQ=28.32;MQ0=0;MQRankSum=0.320;QD=0.36;ReadPosRankSum=-0.992;SB=-1.196e+00 GT:AD:DP:GQ:PL 0/1:28,3:31:28:28,0,495 0/1:26,3:29:36:36,0,331 0/0:31,4:36:3:0,3,446 0/1:26,2:28:8:8,0,270 +chr10 117061606 . T G 57.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.397;DP=58;Dels=0.03;FS=0.000;HaplotypeScore=9.9347;MLEAC=3;MLEAF=0.375;MQ=22.74;MQ0=0;MQRankSum=0.303;QD=1.43;ReadPosRankSum=0.023;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,1:13:18:18,0,77 0/1:15,3:18:36:62,0,36 0/0:17,1:18:18:0,18,169 0/1:6,1:7:20:20,0,60 +chr10 117884950 rs2245020 G A 986.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.995;DB;DP=108;Dels=0.00;FS=3.759;HaplotypeScore=1.4768;MLEAC=3;MLEAF=0.375;MQ=34.94;MQ0=0;MQRankSum=-1.914;QD=12.33;ReadPosRankSum=1.569;SB=-5.120e+02 GT:AD:DP:GQ:PL 0/0:28,0:28:84:0,84,1030 0/1:11,14:25:99:391,0,311 0/1:17,16:33:99:441,0,467 0/1:14,8:22:99:198,0,195 +chr10 118117495 . C T 40.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.459;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.4905;MLEAC=2;MLEAF=0.250;MQ=33.03;MQ0=0;MQRankSum=-0.924;QD=1.44;ReadPosRankSum=1.751;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,1:14:1:1,0,298 0/0:14,1:15:2:0,2,297 0/1:11,3:14:73:73,0,208 0/0:3,0:3:3:0,3,23 +chr10 118187399 rs10787669 T G 678.90 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.743;DB;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=7;MLEAF=0.875;MQ=32.43;MQ0=0;MQRankSum=0.349;QD=27.16;ReadPosRankSum=0.039;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,5:5:15:195,15,0 0/1:2,4:6:65:138,0,65 1/1:1,10:11:30:357,30,0 1/1:1,1:3:3:32,3,0 +chr10 118436075 . C A 37.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.113;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7813;MLEAC=1;MLEAF=0.125;MQ=35.99;MQ0=0;MQRankSum=-0.070;QD=1.65;ReadPosRankSum=-0.591;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:39:0,39,512 0/0:27,0:27:69:0,69,923 0/0:26,0:26:57:0,57,755 0/1:19,4:23:74:74,0,509 +chr10 118440790 . T G 50.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.335;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3110;MLEAC=3;MLEAF=0.375;MQ=35.56;MQ0=0;MQRankSum=-1.754;QD=0.66;ReadPosRankSum=-2.341;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,3:31:37:37,0,810 0/0:32,3:35:29:0,29,1008 0/1:25,3:28:41:41,0,770 0/1:16,2:18:16:16,0,396 +chr10 118460412 . T C 52.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.246;DP=52;Dels=0.04;FS=4.301;HaplotypeScore=5.8899;MLEAC=4;MLEAF=0.500;MQ=17.73;MQ0=0;MQRankSum=0.534;QD=1.70;ReadPosRankSum=-2.161;SB=-3.880e+01 GT:AD:DP:GQ:PL 0/0:9,1:10:3:0,3,28 0/0:9,1:10:6:0,6,49 1/1:13,4:17:9:72,9,0 1/1:11,2:13:3:25,3,0 +chr10 118616058 . C T 127.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.137;DP=76;Dels=0.01;FS=74.218;HaplotypeScore=6.4587;MLEAC=3;MLEAF=0.375;MQ=33.75;MQ0=0;MQRankSum=-3.020;QD=2.15;ReadPosRankSum=-0.734;SB=-1.083e-01 GT:AD:DP:GQ:PL 0/1:21,2:23:10:10,0,527 0/0:15,2:17:8:0,8,341 0/1:14,3:17:76:76,0,378 0/1:12,6:18:83:83,0,278 +chr10 119012925 . T G 31.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.040;DP=112;Dels=0.04;FS=42.685;HaplotypeScore=15.0207;MLEAC=3;MLEAF=0.375;MQ=27.51;MQ0=0;MQRankSum=-0.008;QD=0.36;ReadPosRankSum=-1.243;SB=12.38 GT:AD:DP:GQ:PL 0/0:22,1:25:8:0,8,301 0/1:32,2:34:2:2,0,549 0/1:31,3:34:35:35,0,488 0/1:13,2:15:34:34,0,188 +chr10 119768551 rs7923321 C T 10659.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.809;DB;DP=278;Dels=0.00;FS=6.388;HaplotypeScore=2.2298;MLEAC=8;MLEAF=1.00;MQ=40.38;MQ0=0;MQRankSum=1.086;QD=38.34;ReadPosRankSum=2.353;SB=-1.954e+03 GT:AD:DP:GQ:PL 1/1:2,60:62:99:2485,181,0 1/1:3,69:72:99:2812,174,0 1/1:7,71:78:99:2899,181,0 1/1:4,61:65:99:2463,147,0 +chr10 120081948 rs853911 C T 1257.64 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.558;DB;DP=77;Dels=0.01;FS=11.761;HaplotypeScore=0.6754;MLEAC=8;MLEAF=1.00;MQ=21.05;MQ0=0;MQRankSum=0.244;QD=16.33;ReadPosRankSum=3.430;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,24:26:4:420,4,0 1/1:2,20:22:21:386,21,0 1/1:2,16:18:9:272,9,0 1/1:0,10:10:24:218,24,0 +chr10 120354496 rs151033790 C G 184.05 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.350;DB;DP=55;Dels=0.00;FS=52.916;HaplotypeScore=2.6461;MLEAC=4;MLEAF=0.500;MQ=32.42;MQ0=0;MQRankSum=-1.322;QD=3.35;ReadPosRankSum=-0.376;SB=-6.610e+00 GT:AD:DP:GQ:PL 0/1:11,2:13:15:15,0,203 0/1:9,1:10:10:10,0,187 0/1:16,6:22:99:153,0,302 0/1:8,2:10:48:48,0,93 +chr10 120632048 rs9787461 A G 173.31 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.216;DB;DP=165;Dels=0.01;FS=2.047;HaplotypeScore=1.8689;MLEAC=3;MLEAF=0.375;MQ=10.77;MQ0=0;MQRankSum=-4.994;QD=1.56;ReadPosRankSum=1.819;SB=-5.941e+01 GT:AD:DP:GQ:PL 0/0:54,0:54:30:0,30,270 0/1:8,28:36:4:97,0,4 0/1:22,23:45:18:51,0,18 0/1:17,12:29:68:68,0,83 +chr10 120692186 . A C 34.03 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.500;DP=111;Dels=0.00;FS=18.970;HaplotypeScore=7.5239;MLEAC=2;MLEAF=0.250;MQ=17.50;MQ0=0;MQRankSum=2.590;QD=0.54;ReadPosRankSum=-2.101;SB=10.33 GT:AD:DP:GQ:PL 0/0:24,0:25:15:0,15,143 0/1:28,2:30:43:43,0,134 0/1:32,1:33:20:32,0,20 0/0:23,0:23:9:0,9,105 +chr10 120820290 . G A 39.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.802;DP=181;Dels=0.03;FS=45.453;HaplotypeScore=21.9662;MLEAC=2;MLEAF=0.250;MQ=26.96;MQ0=0;MQRankSum=-0.741;QD=0.57;ReadPosRankSum=-1.114;SB=-1.984e+00 GT:AD:DP:GQ:PL 0/1:44,3:47:18:18,0,609 0/0:43,1:44:69:0,69,668 0/0:61,2:64:47:0,47,927 0/1:16,4:20:63:63,0,256 +chr10 121212028 rs915115 A C 31.77 . AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.76;MQ0=0;QD=10.59;SB=-2.876e+01 GT:AD:DP:GQ:PL 1/1:1,2:3:6:63,6,0 ./. ./. ./. +chr10 121436117 . G T 37.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.924;DP=294;Dels=0.01;FS=3.553;HaplotypeScore=8.8105;MLEAC=1;MLEAF=0.125;MQ=33.88;MQ0=0;MQRankSum=-5.215;QD=0.56;ReadPosRankSum=-0.613;SB=-7.005e+00 GT:AD:DP:GQ:PL 0/0:63,3:66:60:0,60,1559 0/0:64,4:69:59:0,59,1629 0/0:85,3:89:99:0,144,2341 0/1:59,9:68:74:74,0,1480 +chr10 121675460 . A T 122.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.253;DP=108;Dels=0.00;FS=8.373;HaplotypeScore=5.5613;MLEAC=2;MLEAF=0.250;MQ=30.30;MQ0=0;MQRankSum=1.229;QD=2.27;ReadPosRankSum=3.259;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,4:25:83:83,0,152 0/0:36,1:37:4:0,4,337 0/1:25,3:29:80:80,0,196 0/0:17,0:17:18:0,18,171 +chr10 122618148 rs2241846 G C 684.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.544;DB;DP=112;Dels=0.00;FS=3.536;HaplotypeScore=1.8281;MLEAC=3;MLEAF=0.375;MQ=38.09;MQ0=0;MQRankSum=-3.473;QD=8.25;ReadPosRankSum=1.219;SB=-1.030e+02 GT:AD:DP:GQ:PL 0/0:29,0:29:78:0,78,1059 0/1:15,9:24:99:260,0,485 0/1:25,12:37:99:351,0,819 0/1:17,5:22:99:117,0,543 +chr10 122664839 . C T 40.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.195;DP=120;Dels=0.00;FS=4.782;HaplotypeScore=0.9314;MLEAC=1;MLEAF=0.125;MQ=37.94;MQ0=0;MQRankSum=-1.884;QD=1.17;ReadPosRankSum=0.227;SB=7.599e-03 GT:AD:DP:GQ:PL 0/0:28,1:29:36:0,36,734 0/0:23,1:24:51:0,51,650 0/0:32,0:32:69:0,69,898 0/1:30,4:35:77:77,0,449 +chr10 122668124 . T C 624.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.262;DP=218;Dels=0.00;FS=106.677;HaplotypeScore=3.1687;MLEAC=4;MLEAF=0.500;MQ=34.78;MQ0=0;MQRankSum=-3.261;QD=2.87;ReadPosRankSum=3.303;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:40,10:50:99:210,0,759 0/1:43,11:54:99:261,0,941 0/1:66,6:73:86:86,0,985 0/1:32,9:41:99:110,0,536 +chr10 122668353 rs111464125 T TAAGA 650.12 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.237;DB;DP=30;FS=0.000;HaplotypeScore=7.6258;MLEAC=5;MLEAF=0.625;MQ=32.39;MQ0=0;MQRankSum=0.505;QD=21.67;RPA=1,2;RU=AAGA;ReadPosRankSum=-1.227;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:5,0:4:32:32,0,62 0/1:5,2:7:17:170,0,17 0/1:6,3:7:53:228,0,53 1/1:3,4:7:12:274,12,0 +chr10 123424292 . G T 34.26 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.000;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.4894;MLEAC=1;MLEAF=0.250;MQ=30.12;MQ0=0;MQRankSum=1.026;QD=11.42;ReadPosRankSum=0.000;SB=-3.001e+00 GT:AD:DP:GQ:PL 0/1:1,2:3:25:66,0,25 0/0:1,0:1:3:0,3,23 ./. ./. +chr10 123724913 . A T 33.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.525;DP=52;Dels=0.00;FS=5.929;HaplotypeScore=1.1198;MLEAC=3;MLEAF=0.375;MQ=27.58;MQ0=0;MQRankSum=-1.915;QD=0.75;ReadPosRankSum=2.891;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:7:7,0,144 0/1:14,5:19:46:46,0,254 0/1:12,2:14:22:22,0,125 0/0:5,3:8:15:0,15,188 +chr10 123997044 . C T 150.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.759;DP=129;Dels=0.00;FS=130.964;HaplotypeScore=4.5587;MLEAC=3;MLEAF=0.375;MQ=33.49;MQ0=0;MQRankSum=-1.213;QD=1.59;ReadPosRankSum=-1.044;SB=1.40 GT:AD:DP:GQ:PL 0/0:32,2:34:29:0,29,1057 0/1:26,4:30:39:39,0,745 0/1:34,6:40:91:91,0,965 0/1:21,4:25:64:64,0,569 +chr10 124057412 . A T 91.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.915;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9452;MLEAC=3;MLEAF=0.375;MQ=21.83;MQ0=0;MQRankSum=1.321;QD=2.28;ReadPosRankSum=2.907;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:10:79,0,10 0/1:10,2:12:34:39,0,34 0/1:13,3:16:15:15,0,98 0/0:8,2:10:6:0,6,58 +chr10 124159747 . TA T 287.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.021;DP=38;FS=0.000;HaplotypeScore=10.8118;MLEAC=5;MLEAF=0.625;MQ=24.58;MQ0=0;MQRankSum=-0.189;QD=7.57;RPA=3,2;RU=A;ReadPosRankSum=-0.794;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:9,5:11:93:93,0,130 0/1:8,4:7:23:179,0,23 0/1:7,1:5:26:26,0,117 1/1:1,1:1:3:41,3,0 +chr10 124166119 . T A 44.15 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.143;DP=88;Dels=0.03;FS=17.342;HaplotypeScore=21.2550;MLEAC=3;MLEAF=0.375;MQ=26.52;MQ0=0;MQRankSum=0.080;QD=0.69;ReadPosRankSum=0.717;SB=-9.930e+00 GT:AD:DP:GQ:PL 0/1:21,2:23:31:31,0,203 0/0:22,1:23:21:0,21,191 0/1:27,2:29:43:43,0,191 0/1:9,1:10:13:13,0,126 +chr10 124384106 . C A 335.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.422;DP=314;Dels=0.00;FS=361.157;HaplotypeScore=13.4908;MLEAC=4;MLEAF=0.500;MQ=17.93;MQ0=0;MQRankSum=2.003;QD=1.07;ReadPosRankSum=1.215;SB=-1.135e+00 GT:AD:DP:GQ:PL 0/1:64,11:75:99:128,0,397 0/1:60,10:70:92:92,0,499 0/1:75,11:86:93:93,0,714 0/1:70,13:83:65:65,0,496 +chr10 124385560 . C T 272.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.624;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=3.9197;MLEAC=3;MLEAF=0.375;MQ=28.82;MQ0=0;MQRankSum=0.615;QD=2.93;ReadPosRankSum=0.536;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,4:32:63:63,0,504 0/1:30,8:38:99:144,0,578 0/0:29,2:31:10:0,10,613 0/1:17,6:23:99:108,0,251 +chr10 124390451 . G T 102.39 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.697;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.6663;MLEAC=3;MLEAF=0.375;MQ=31.64;MQ0=0;MQRankSum=-1.304;QD=1.26;ReadPosRankSum=0.566;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:33,2:35:17:0,17,734 0/1:24,6:30:99:107,0,360 0/1:25,2:27:11:11,0,426 0/1:21,3:24:27:27,0,289 +chr10 124753438 . A C 126.22 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.582;DP=145;Dels=0.01;FS=106.571;HaplotypeScore=5.5010;MLEAC=2;MLEAF=0.250;MQ=35.17;MQ0=0;MQRankSum=-5.601;QD=1.48;ReadPosRankSum=2.903;SB=2.03 GT:AD:DP:GQ:PL 0/1:32,9:41:99:108,0,918 0/1:35,7:43:59:59,0,1117 0/0:35,4:39:6:0,6,1189 0/0:21,0:21:57:0,57,741 +chr10 125426565 rs4980313 G C 495.15 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.896;DB;DP=29;Dels=0.03;FS=12.489;HaplotypeScore=1.4750;MLEAC=7;MLEAF=0.875;MQ=29.03;MQ0=0;MQRankSum=2.132;QD=17.07;ReadPosRankSum=0.237;SB=-4.292e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:184,15,0 0/1:2,2:4:23:63,0,23 1/1:5,5:10:15:179,15,0 1/1:6,3:9:9:113,9,0 +chr10 125506602 . C A 140.66 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.827;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=3.6557;MLEAC=3;MLEAF=0.375;MQ=34.46;MQ0=0;MQRankSum=-3.892;QD=0.81;ReadPosRankSum=-0.803;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:49,5:54:9:9,0,1281 0/1:54,9:63:78:78,0,1259 0/0:63,5:69:16:0,16,1514 0/1:49,7:56:96:96,0,1053 +chr10 125526605 . T G 72.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.823;DP=134;Dels=0.00;FS=42.362;HaplotypeScore=3.4214;MLEAC=2;MLEAF=0.250;MQ=33.70;MQ0=0;MQRankSum=-1.795;QD=1.23;ReadPosRankSum=-0.441;SB=-3.116e-02 GT:AD:DP:GQ:PL 0/1:27,4:31:82:82,0,564 0/0:36,2:38:52:0,52,884 0/0:35,2:37:17:0,17,883 0/1:25,3:28:32:32,0,601 +chr10 125769721 . T A 198.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.141;DP=161;Dels=0.01;FS=132.015;HaplotypeScore=5.2186;MLEAC=3;MLEAF=0.375;MQ=31.36;MQ0=0;MQRankSum=0.347;QD=1.72;ReadPosRankSum=1.631;SB=-3.514e+00 GT:AD:DP:GQ:PL 0/1:37,6:43:99:108,0,904 0/1:28,6:34:99:128,0,579 0/1:35,3:38:1:1,0,727 0/0:40,4:45:5:0,5,929 +chr10 126185401 . G A,C 30.41 . AC=3,2;AF=0.375,0.250;AN=8;BaseQRankSum=0.457;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=9.7199;MLEAC=3,2;MLEAF=0.375,0.250;MQ=25.06;MQ0=0;MQRankSum=0.762;QD=0.69;ReadPosRankSum=-1.763;SB=-6.942e-01 GT:AD:DP:GQ:PL 0/1:11,2,0:13:11:11,0,151,29,154,182 0/1:7,2,1:10:2:22,0,21,3,2,24 0/1:9,1,0:10:22:22,0,117,34,120,154 2/2:8,0,3:11:6:51,51,51,6,6,0 +chr10 126523582 rs11245382 T A 33.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.166;DB;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.8612;MLEAC=2;MLEAF=0.250;MQ=34.71;MQ0=0;MQRankSum=-3.722;QD=0.55;ReadPosRankSum=-2.258;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,1:27:51:0,51,646 0/0:30,2:32:58:0,58,1026 0/1:32,4:36:40:40,0,655 0/1:22,3:25:35:35,0,361 +chr10 126631412 . C G 37.33 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.589;DP=155;Dels=0.02;FS=47.801;HaplotypeScore=15.1253;MLEAC=3;MLEAF=0.375;MQ=29.18;MQ0=0;MQRankSum=-2.611;QD=0.35;ReadPosRankSum=1.485;SB=2.45 GT:AD:DP:GQ:PL 0/1:40,3:43:11:11,0,505 0/0:45,2:47:45:0,45,805 0/1:29,4:34:22:22,0,495 0/1:24,3:28:47:47,0,356 +chr10 126714966 rs3012075 A G 643.32 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.141;DB;DP=40;Dels=0.05;FS=0.000;HaplotypeScore=2.3928;MLEAC=6;MLEAF=0.750;MQ=30.30;MQ0=0;MQRankSum=-1.746;QD=16.08;ReadPosRankSum=1.219;SB=-3.108e+01 GT:AD:DP:GQ:PL 0/1:1,5:6:22:140,0,22 0/1:11,3:14:67:67,0,315 1/1:1,11:12:6:342,6,0 1/1:2,4:6:12:139,12,0 +chr10 127388402 rs60189153 T C 45.77 . AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=22.88;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6:77,6,0 ./. ./. +chr10 127483573 rs3740179 G A 926.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.640;DB;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.9304;MLEAC=3;MLEAF=0.375;MQ=37.27;MQ0=0;MQRankSum=-4.560;QD=9.09;ReadPosRankSum=0.849;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,12:37:99:341,0,863 0/0:52,0:52:99:0,150,1971 0/1:25,13:39:99:355,0,898 0/1:17,9:26:99:274,0,527 +chr10 127529821 . C G 37.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.033;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=1.4918;MLEAC=1;MLEAF=0.125;MQ=34.27;MQ0=0;MQRankSum=-1.405;QD=1.31;ReadPosRankSum=-0.373;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:36,0:36:72:0,72,886 0/0:51,0:51:99:0,120,1554 0/0:40,0:40:90:0,90,1139 0/1:25,4:29:74:74,0,484 +chr10 127575897 rs61870702 G T 44.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.45;MQ0=0;MQRankSum=0.736;QD=14.92;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,2:3:6:76,6,0 ./. +chr10 127760234 . A G 90.42 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.069;DP=131;Dels=0.01;FS=4.542;HaplotypeScore=1.8961;MLEAC=3;MLEAF=0.375;MQ=33.06;MQ0=0;MQRankSum=0.647;QD=0.91;ReadPosRankSum=-0.110;SB=1.41 GT:AD:DP:GQ:PL 0/0:31,1:32:9:0,9,475 0/1:39,4:43:65:65,0,545 0/1:27,2:29:26:26,0,439 0/1:24,2:26:42:42,0,238 +chr10 128191368 rs10510159 T C 2123.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.794;DB;DP=232;Dels=0.00;FS=7.419;HaplotypeScore=2.7274;MLEAC=3;MLEAF=0.375;MQ=37.41;MQ0=0;MQRankSum=-2.448;QD=12.64;ReadPosRankSum=0.709;SB=-6.140e+02 GT:AD:DP:GQ:PL 0/0:64,0:64:99:0,193,2475 0/1:36,30:66:99:917,0,1150 0/1:48,31:79:99:957,0,1658 0/1:14,9:23:99:293,0,350 +chr10 128209959 rs4962342 G T 2448.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.381;DB;DP=73;Dels=0.00;FS=15.502;HaplotypeScore=0.8875;MLEAC=8;MLEAF=1.00;MQ=32.88;MQ0=0;MQRankSum=2.381;QD=33.55;ReadPosRankSum=-0.747;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,18:19:54:675,54,0 1/1:1,18:19:51:624,51,0 1/1:1,26:27:78:943,78,0 1/1:1,7:8:21:246,21,0 +chr10 128810685 rs1890872 T C 760.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.669;DB;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.4995;MLEAC=3;MLEAF=0.375;MQ=37.38;MQ0=0;MQRankSum=-2.764;QD=7.46;ReadPosRankSum=-0.474;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,7:24:99:204,0,506 0/0:49,0:49:99:0,135,1761 0/1:26,12:38:99:366,0,812 0/1:30,10:40:99:234,0,971 +chr10 128850841 rs9418817 T C 2977.79 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.451;DB;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.7228;MLEAC=6;MLEAF=0.750;MQ=37.35;MQ0=0;MQRankSum=-2.472;QD=17.52;ReadPosRankSum=2.016;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:43,16:59:99:419,0,1414 0/1:39,22:61:99:691,0,1361 1/1:0,41:41:99:1555,123,0 1/1:0,9:9:27:359,27,0 +chr10 129237572 rs1926427 G A 2549.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.866;DB;DP=141;Dels=0.01;FS=7.493;HaplotypeScore=3.4941;MLEAC=4;MLEAF=0.500;MQ=34.81;MQ0=0;MQRankSum=3.060;QD=18.08;ReadPosRankSum=3.852;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,28:45:99:990,0,413 0/1:15,17:32:99:560,0,272 0/1:22,19:41:99:637,0,480 0/1:10,12:22:99:405,0,178 +chr10 129249693 rs2229605 G A 1099.57 . AC=7;AF=0.875;AN=8;BaseQRankSum=4.570;DB;DP=64;Dels=0.02;FS=26.492;HaplotypeScore=1.6326;MLEAC=7;MLEAF=0.875;MQ=29.03;MQ0=0;MQRankSum=0.623;QD=17.18;ReadPosRankSum=0.658;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:356,30,0 0/1:17,7:24:99:199,0,350 1/1:1,12:15:30:341,30,0 1/1:5,8:13:21:248,21,0 +chr10 129859061 rs28411949 T C 235.73 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.793;DB;DP=12;Dels=0.00;FS=8.195;HaplotypeScore=0.4470;MLEAC=8;MLEAF=1.00;MQ=27.56;MQ0=0;MQRankSum=2.793;QD=19.64;ReadPosRankSum=-0.831;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:79,6,0 1/1:1,2:3:6:78,6,0 1/1:2,1:3:3:40,3,0 1/1:2,2:4:6:76,6,0 +chr10 129877869 . T C 220.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.915;DP=177;Dels=0.00;FS=82.322;HaplotypeScore=4.2167;MLEAC=3;MLEAF=0.375;MQ=35.27;MQ0=0;MQRankSum=-4.548;QD=1.75;ReadPosRankSum=3.343;SB=0.777 GT:AD:DP:GQ:PL 0/1:36,6:42:82:82,0,1025 0/1:41,10:51:99:103,0,1216 0/0:48,3:51:32:0,32,1409 0/1:28,5:33:79:79,0,668 +chr10 129904560 rs2853346 C T 2486.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.240;DB;DP=291;Dels=0.00;FS=1.450;HaplotypeScore=0.9926;MLEAC=4;MLEAF=0.500;MQ=23.55;MQ0=0;MQRankSum=4.354;QD=11.95;ReadPosRankSum=2.224;SB=-1.016e+03 GT:AD:DP:GQ:PL 0/0:83,0:83:99:0,129,1306 1/1:2,63:65:99:1598,134,0 0/1:47,20:67:99:462,0,686 0/1:48,28:76:99:475,0,685 +chr10 129917560 rs2071498 T C 1561.14 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.658;DB;DP=67;Dels=0.00;FS=5.653;HaplotypeScore=0.6082;MLEAC=8;MLEAF=1.00;MQ=27.72;MQ0=0;MQRankSum=4.206;QD=23.30;ReadPosRankSum=0.074;SB=-5.765e+02 GT:AD:DP:GQ:PL 1/1:3,8:11:24:288,24,0 1/1:7,20:27:27:629,27,0 1/1:5,19:24:51:578,51,0 1/1:2,3:5:9:105,9,0 +chr10 130315461 . C G 34.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=20.42;MQ0=0;MQRankSum=1.026;QD=8.50;ReadPosRankSum=-1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,1:3:3:32,3,0 ./. 1/1:0,1:1:3:35,3,0 +chr10 131638747 . A G 61.26 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.221;DP=22;Dels=0.00;FS=3.424;HaplotypeScore=5.0800;MLEAC=5;MLEAF=0.833;MQ=22.26;MQ0=0;MQRankSum=0.322;QD=4.71;ReadPosRankSum=1.221;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,2:5:3:27,3,0 1/1:5,3:8:9:74,9,0 ./. 0/0:3,0:3:3:0,3,23 +chr10 133951707 rs2814179 G A 998.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.917;DB;DP=122;Dels=0.01;FS=7.880;HaplotypeScore=9.1238;MLEAC=3;MLEAF=0.375;MQ=29.85;MQ0=0;MQRankSum=1.101;QD=10.63;ReadPosRankSum=-0.424;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:13,17:30:99:529,0,307 0/0:27,0:27:66:0,66,770 0/1:22,13:35:99:350,0,449 0/1:22,7:29:99:163,0,398 +chr10 134623849 . G A 297.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.882;DP=67;Dels=0.03;FS=2.647;HaplotypeScore=6.1463;MLEAC=4;MLEAF=0.500;MQ=23.04;MQ0=0;MQRankSum=0.443;QD=4.44;ReadPosRankSum=3.913;SB=-1.468e-02 GT:AD:DP:GQ:PL 0/1:11,4:15:44:75,0,44 0/1:14,5:19:91:91,0,183 0/1:8,7:15:99:146,0,118 0/1:14,2:16:28:28,0,198 +chr10 134623994 . C T 208.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.861;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.2013;MLEAC=4;MLEAF=0.500;MQ=30.13;MQ0=0;MQRankSum=-3.657;QD=2.71;ReadPosRankSum=0.572;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:24:24,0,305 0/1:14,3:17:6:6,0,286 0/1:16,5:21:98:98,0,234 0/1:11,9:20:99:122,0,299 +chr10 134726219 . T C 33.85 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.285;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5815;MLEAC=1;MLEAF=0.125;MQ=34.89;MQ0=0;MQRankSum=-1.866;QD=2.60;ReadPosRankSum=-1.107;SB=-2.279e+00 GT:AD:DP:GQ:PL 0/0:9,0:9:15:0,15,176 0/0:7,0:7:12:0,12,142 0/0:18,1:19:2:0,2,268 0/1:10,3:13:69:69,0,148 +chr10 134726621 rs4880467 G C 72.39 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.634;DB;DP=27;Dels=0.00;FS=13.030;HaplotypeScore=4.7388;MLEAC=3;MLEAF=0.375;MQ=24.55;MQ0=0;MQRankSum=-1.317;QD=3.81;ReadPosRankSum=-0.049;SB=-2.612e+01 GT:AD:DP:GQ:PL 0/1:3,2:5:15:15,0,68 1/1:4,1:5:3:28,3,0 0/1:5,4:9:62:73,0,62 0/0:8,0:8:12:0,12,127 +chr10 134754532 . C T 37.13 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.285;DP=94;Dels=0.00;FS=8.230;HaplotypeScore=7.1701;MLEAC=1;MLEAF=0.125;MQ=34.13;MQ0=0;MQRankSum=-0.181;QD=1.24;ReadPosRankSum=-1.497;SB=-3.708e+00 GT:AD:DP:GQ:PL 0/0:21,1:23:11:0,11,420 0/1:26,4:30:73:73,0,416 0/0:28,0:28:69:0,69,816 0/0:13,0:13:15:0,15,158 +chr10 134910536 . T C 75.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.060;DP=110;Dels=0.01;FS=35.504;HaplotypeScore=4.3842;MLEAC=2;MLEAF=0.250;MQ=27.15;MQ0=0;MQRankSum=-1.832;QD=1.15;ReadPosRankSum=0.766;SB=-1.196e+00 GT:AD:DP:GQ:PL 0/0:18,3:21:17:0,17,491 0/0:22,1:23:48:0,48,520 0/1:27,5:32:86:86,0,617 0/1:28,5:33:31:31,0,389 +chr10 134997514 rs67800134 A G 463.55 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.822;DB;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.8175;MLEAC=5;MLEAF=0.625;MQ=28.92;MQ0=0;MQRankSum=-3.378;QD=5.65;ReadPosRankSum=-1.593;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,12:14:33:327,33,0 0/1:18,7:25:99:110,0,327 0/1:16,4:20:68:68,0,334 0/1:19,4:23:3:3,0,247 +chr10 134999889 . T A 43.04 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.998;DP=66;Dels=0.03;FS=5.067;HaplotypeScore=11.7814;MLEAC=1;MLEAF=0.125;MQ=26.63;MQ0=0;MQRankSum=-0.554;QD=1.79;ReadPosRankSum=0.744;SB=12.04 GT:AD:DP:GQ:PL 0/0:11,0:11:21:0,21,249 0/1:18,5:23:79:79,0,180 0/0:15,0:15:27:0,27,327 0/0:14,0:15:18:0,18,166 +chr10 135084322 rs3008321 A G 119.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.637;DB;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.1471;MLEAC=4;MLEAF=0.500;MQ=26.82;MQ0=0;MQRankSum=-1.102;QD=6.28;ReadPosRankSum=1.570;SB=-7.272e+01 GT:AD:DP:GQ:PL 0/1:2,1:3:20:20,0,62 1/1:1,3:4:9:86,9,0 0/1:9,3:12:60:60,0,146 0/0:9,0:9:18:0,18,207 +chr10 135086676 rs3008325 A G 37.33 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.788;DB;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.8752;MLEAC=4;MLEAF=0.500;MQ=22.33;MQ0=0;MQRankSum=-0.244;QD=2.87;ReadPosRankSum=-0.244;SB=-2.324e+01 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,46 1/1:2,2:4:3:39,3,0 0/1:4,2:6:18:20,0,18 0/1:2,1:3:21:21,0,41 +chr10 135098672 rs3008334 G A 981.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.354;DB;DP=66;Dels=0.00;FS=5.014;HaplotypeScore=4.1492;MLEAC=5;MLEAF=0.625;MQ=34.32;MQ0=0;MQRankSum=-0.103;QD=14.87;ReadPosRankSum=0.708;SB=-3.620e+02 GT:AD:DP:GQ:PL 0/1:14,7:21:99:204,0,400 1/1:4,11:15:33:434,33,0 0/1:9,8:17:99:239,0,293 0/1:8,5:13:99:150,0,237 +chr10 135116440 . A G 160.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.130;DP=163;Dels=0.00;FS=13.747;HaplotypeScore=2.3983;MLEAC=4;MLEAF=0.500;MQ=34.99;MQ0=0;MQRankSum=-4.477;QD=0.99;ReadPosRankSum=1.421;SB=-1.224e-01 GT:AD:DP:GQ:PL 0/1:32,4:36:49:49,0,773 0/1:46,5:51:18:18,0,1109 0/1:32,4:36:18:18,0,689 0/1:34,6:40:99:118,0,649 +chr10 135233731 . T A 33.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.419;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3283;MLEAC=2;MLEAF=0.250;MQ=25.40;MQ0=0;MQRankSum=-0.872;QD=1.47;ReadPosRankSum=-1.556;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:7:7,0,147 0/0:14,0:14:15:0,15,171 0/0:11,1:12:0:0,0,260 0/1:11,4:15:64:64,0,140 +chr10 135279914 . A C 91.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.304;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=2.1396;MLEAC=3;MLEAF=0.375;MQ=29.70;MQ0=0;MQRankSum=0.087;QD=1.88;ReadPosRankSum=-1.205;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,2:21:16:16,0,388 0/1:9,1:10:6:6,0,211 0/0:17,1:18:4:0,4,265 0/1:13,4:17:99:110,0,203 +chr10 135370639 rs8181357 C A 710.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=4.442;DB;DP=363;Dels=0.00;FS=3.075;HaplotypeScore=2.9016;MLEAC=1;MLEAF=0.125;MQ=39.96;MQ0=0;MQRankSum=-7.081;QD=8.46;ReadPosRankSum=1.021;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/0:79,0:79:99:0,232,3115 0/1:54,29:83:99:747,0,1865 0/0:107,0:107:99:0,313,4280 0/0:93,0:93:99:0,274,3692 +chr10 135438977 rs79631365 G A 204.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.237;DB;DP=195;Dels=0.00;FS=0.548;HaplotypeScore=3.6850;MLEAC=4;MLEAF=0.500;MQ=8.54;MQ0=0;MQRankSum=1.868;QD=1.05;ReadPosRankSum=-0.417;SB=-5.745e+01 GT:AD:DP:GQ:PL 0/1:27,21:48:40:94,0,40 0/1:37,14:51:7:7,0,112 0/1:29,19:48:13:48,0,13 0/1:28,20:48:15:97,0,15 +chr11 243712 rs6598062 A G 1128.07 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.211;DB;DP=39;Dels=0.00;FS=20.688;HaplotypeScore=0.2499;MLEAC=8;MLEAF=1.00;MQ=31.09;MQ0=0;MQRankSum=3.211;QD=28.92;ReadPosRankSum=1.260;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,4:4:12:142,12,0 1/1:2,10:12:24:265,24,0 1/1:0,11:11:33:430,33,0 1/1:3,9:12:27:330,27,0 +chr11 280398 . G C 32.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=-0.358;DP=6;Dels=0.00;FS=3.979;HaplotypeScore=0.8675;MLEAC=4;MLEAF=1.00;MQ=21.13;MQ0=0;MQRankSum=1.231;QD=5.34;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:2,1:3:3:38,3,0 1/1:2,1:3:3:27,3,0 +chr11 293741 . G T 50.96 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.809;DP=125;Dels=0.00;FS=26.840;HaplotypeScore=6.4458;MLEAC=2;MLEAF=0.250;MQ=30.45;MQ0=0;MQRankSum=-4.034;QD=1.08;ReadPosRankSum=-2.034;SB=-1.082e+00 GT:AD:DP:GQ:PL 0/1:22,3:26:19:19,0,595 0/0:31,5:36:3:0,3,572 0/0:39,3:42:35:0,35,969 0/1:17,4:21:72:72,0,312 +chr11 397732 rs9795299 T G 100.41 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.062;DB;DP=23;Dels=0.00;FS=3.979;HaplotypeScore=1.6073;MLEAC=7;MLEAF=0.875;MQ=16.26;MQ0=0;MQRankSum=1.945;QD=7.17;ReadPosRankSum=-0.295;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:54,6,0 0/0:7,2:9:3:0,3,25 1/1:6,2:8:3:29,3,0 1/1:0,3:3:6:60,6,0 +chr11 398930 . CAG C 437.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.574;DP=68;FS=0.000;HaplotypeScore=37.2739;MLEAC=4;MLEAF=0.500;MQ=25.72;MQ0=0;MQRankSum=1.191;QD=6.43;ReadPosRankSum=-0.266;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:17,3:13:81:81,0,337 0/1:13,2:10:87:87,0,259 0/1:11,4:11:84:84,0,244 0/1:10,5:13:99:237,0,227 +chr11 418408 . G C 56.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.504;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=16.1170;MLEAC=4;MLEAF=0.500;MQ=18.17;MQ0=0;MQRankSum=1.273;QD=2.26;ReadPosRankSum=0.424;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:17:27,0,17 0/1:4,3:8:16:49,0,16 1/1:4,4:8:3:22,3,0 0/0:7,0:7:3:0,3,31 +chr11 479158 . C T 490.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.612;DP=133;Dels=0.00;FS=34.452;HaplotypeScore=2.2393;MLEAC=4;MLEAF=0.500;MQ=35.93;MQ0=0;MQRankSum=-3.211;QD=3.69;ReadPosRankSum=3.062;SB=-1.227e-02 GT:AD:DP:GQ:PL 0/1:24,4:28:39:39,0,519 0/1:31,6:37:93:93,0,660 0/1:27,10:38:99:247,0,515 0/1:24,6:30:99:154,0,347 +chr11 601785 rs2396545 T C 459.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.659;DB;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.4210;MLEAC=3;MLEAF=0.375;MQ=33.69;MQ0=0;MQRankSum=-0.997;QD=5.75;ReadPosRankSum=-1.313;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:72:0,72,878 0/1:19,5:25:99:130,0,297 0/1:25,6:31:99:143,0,667 0/1:16,8:24:99:230,0,307 +chr11 612843 rs10902178 T G 205.99 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.341;DB;DP=48;Dels=0.00;FS=1.242;HaplotypeScore=3.9999;MLEAC=5;MLEAF=0.625;MQ=20.96;MQ0=0;MQRankSum=-1.286;QD=4.29;ReadPosRankSum=0.420;SB=-9.163e+01 GT:AD:DP:GQ:PL 0/1:7,7:15:73:73,0,101 0/1:7,5:12:13:13,0,159 0/1:6,6:12:10:78,0,10 1/1:1,8:9:9:86,9,0 +chr11 618998 rs2740375 G A 314.54 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.114;DB;DP=66;Dels=0.02;FS=16.893;HaplotypeScore=12.2877;MLEAC=3;MLEAF=0.375;MQ=18.55;MQ0=0;MQRankSum=1.681;QD=8.74;ReadPosRankSum=1.067;SB=-6.875e+01 GT:AD:DP:GQ:PL 0/1:8,7:15:22:163,0,22 1/1:13,8:21:18:198,18,0 0/0:9,2:11:12:0,12,127 0/0:17,1:18:3:0,3,33 +chr11 674458 rs6597997 G A 336.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.296;DB;DP=136;Dels=0.00;FS=2.938;HaplotypeScore=1.4619;MLEAC=1;MLEAF=0.125;MQ=32.23;MQ0=0;MQRankSum=-1.614;QD=10.21;ReadPosRankSum=1.895;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/0:27,0:27:66:0,66,816 0/1:20,13:33:99:373,0,253 0/0:35,0:35:78:0,78,1003 0/0:41,0:41:90:0,90,1068 +chr11 674645 . T C 68.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.638;DP=124;Dels=0.04;FS=2.407;HaplotypeScore=43.6447;MLEAC=3;MLEAF=0.375;MQ=22.63;MQ0=0;MQRankSum=-1.877;QD=0.68;ReadPosRankSum=2.241;SB=-5.202e+01 GT:AD:DP:GQ:PL 0/1:27,6:33:57:57,0,359 0/1:26,4:30:44:44,0,235 0/1:27,4:34:10:10,0,285 0/0:20,2:22:18:0,18,217 +chr11 688342 . G T 55.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.149;DP=53;Dels=0.00;FS=32.221;HaplotypeScore=14.3434;MLEAC=3;MLEAF=0.375;MQ=28.77;MQ0=0;MQRankSum=-1.338;QD=1.05;ReadPosRankSum=-0.365;SB=-4.840e+00 GT:AD:DP:GQ:PL 0/1:9,4:13:75:75,0,137 0/1:15,2:17:16:16,0,304 0/1:12,1:13:1:1,0,248 0/1:8,2:10:1:1,0,172 +chr11 710558 rs7395822 G A 770.57 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.214;DB;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.6541;MLEAC=7;MLEAF=0.875;MQ=20.72;MQ0=0;MQRankSum=-1.104;QD=10.70;ReadPosRankSum=0.601;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:27:255,27,0 0/1:17,8:25:56:56,0,349 1/1:1,18:19:36:313,36,0 1/1:1,12:13:21:191,21,0 +chr11 764869 rs1804553 G T 118.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.750;DB;DP=134;Dels=0.00;FS=9.390;HaplotypeScore=8.0290;MLEAC=4;MLEAF=0.500;MQ=26.19;MQ0=0;MQRankSum=1.946;QD=0.89;ReadPosRankSum=-0.627;SB=-1.174e-01 GT:AD:DP:GQ:PL 0/1:28,1:29:20:20,0,96 0/1:33,2:35:16:16,0,278 0/1:40,4:44:60:60,0,363 0/1:22,4:26:65:65,0,136 +chr11 1016928 rs34053383 C G 747.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.416;DB;DP=317;Dels=0.01;FS=3.208;HaplotypeScore=8.7420;MLEAC=4;MLEAF=0.500;MQ=12.22;MQ0=0;MQRankSum=6.256;QD=2.36;ReadPosRankSum=3.299;SB=-3.357e+02 GT:AD:DP:GQ:PL 0/1:67,15:82:33:289,0,33 0/1:60,15:75:72:79,0,72 0/1:73,14:87:98:135,0,98 0/1:50,18:69:99:287,0,111 +chr11 1081500 . G T 99.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.503;DP=88;Dels=0.00;FS=24.283;HaplotypeScore=2.4179;MLEAC=3;MLEAF=0.375;MQ=30.57;MQ0=0;MQRankSum=-0.946;QD=1.51;ReadPosRankSum=-2.974;SB=-8.450e-01 GT:AD:DP:GQ:PL 0/1:19,2:21:46:46,0,232 0/1:17,4:21:55:55,0,340 0/0:21,1:22:4:0,4,368 0/1:21,3:24:40:40,0,347 +chr11 1082520 rs11245930 A G 328.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.843;DB;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.2385;MLEAC=3;MLEAF=0.375;MQ=28.19;MQ0=0;MQRankSum=-0.469;QD=6.85;ReadPosRankSum=0.984;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:27:0,27,311 0/1:9,3:12:66:84,0,66 0/1:13,9:22:99:240,0,157 0/1:10,3:14:48:48,0,56 +chr11 1096541 . A T 82.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.089;DP=82;Dels=0.01;FS=4.778;HaplotypeScore=9.0146;MLEAC=3;MLEAF=0.375;MQ=26.79;MQ0=0;MQRankSum=-0.803;QD=1.31;ReadPosRankSum=1.676;SB=7.155e-03 GT:AD:DP:GQ:PL 0/1:21,4:25:68:68,0,376 0/1:14,4:18:48:48,0,125 0/0:19,0:19:24:0,24,294 0/1:17,2:19:9:9,0,168 +chr11 1101223 . T C 96.97 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.455;DP=96;Dels=0.02;FS=0.000;HaplotypeScore=3.7254;MLEAC=4;MLEAF=0.500;MQ=34.28;MQ0=0;MQRankSum=-3.353;QD=1.01;ReadPosRankSum=-0.854;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:94:94,0,336 0/1:16,2:18:12:12,0,368 0/1:28,3:31:17:17,0,739 0/1:22,3:25:16:16,0,520 +chr11 1103137 rs11245955 G T 151.48 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.953;DB;DP=41;Dels=0.00;FS=24.167;HaplotypeScore=5.5947;MLEAC=5;MLEAF=0.833;MQ=14.97;MQ0=0;MQRankSum=2.802;QD=3.99;ReadPosRankSum=0.934;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:5,7:12:9:76,9,0 1/1:8,5:14:9:77,9,0 0/1:8,4:12:18:39,0,18 +chr11 1151695 rs28737416 C T 54.87 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.708;DB;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=33.27;MQ0=0;MQRankSum=-1.826;QD=4.99;ReadPosRankSum=-1.304;SB=-3.022e+01 GT:AD:DP:GQ:PL 0/0:8,0:8:21:0,21,266 0/0:4,1:5:12:0,12,158 0/1:3,3:6:75:75,0,94 0/1:4,1:5:21:21,0,94 +chr11 1155703 . C G 30.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.741;DP=50;Dels=0.02;FS=7.764;HaplotypeScore=9.6335;MLEAC=3;MLEAF=0.375;MQ=29.60;MQ0=0;MQRankSum=-1.461;QD=0.91;ReadPosRankSum=0.180;SB=-1.874e+01 GT:AD:DP:GQ:PL 0/1:11,2:13:37:37,0,182 0/1:6,1:7:17:17,0,86 0/0:16,1:17:27:0,27,299 0/1:10,2:12:19:19,0,118 +chr11 1157761 . T A 57.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.180;DP=127;Dels=0.00;FS=26.118;HaplotypeScore=3.1636;MLEAC=2;MLEAF=0.250;MQ=30.85;MQ0=0;MQRankSum=-1.125;QD=0.86;ReadPosRankSum=-1.116;SB=-1.533e-01 GT:AD:DP:GQ:PL 0/0:26,0:26:60:0,60,728 0/1:28,3:31:23:23,0,553 0/0:32,2:34:40:0,40,906 0/1:30,6:36:76:76,0,581 +chr11 1251742 . C T 122.32 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.821;DP=29;Dels=0.00;FS=12.632;HaplotypeScore=7.5971;MLEAC=4;MLEAF=0.667;MQ=23.00;MQ0=0;MQRankSum=-1.200;QD=5.32;ReadPosRankSum=0.311;SB=-9.615e-01 GT:AD:DP:GQ:PL 1/1:4,1:5:3:32,3,0 ./. 0/1:6,2:8:22:22,0,86 0/1:3,7:10:20:107,0,20 +chr11 1253942 rs908229 T C 200.65 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.876;DB;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.1446;MLEAC=5;MLEAF=0.625;MQ=27.73;MQ0=0;MQRankSum=0.241;QD=10.56;ReadPosRankSum=-1.491;SB=-1.024e+02 GT:AD:DP:GQ:PL 0/1:3,1:4:29:29,0,58 1/1:1,2:3:3:41,3,0 0/1:4,3:7:69:92,0,69 0/1:2,3:5:17:81,0,17 +chr11 1258283 rs78669250 G A 142.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.921;DB;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=3.9005;MLEAC=4;MLEAF=0.500;MQ=25.88;MQ0=0;MQRankSum=-0.216;QD=2.41;ReadPosRankSum=0.307;SB=-5.232e+01 GT:AD:DP:GQ:PL 0/1:10,2:12:45:45,0,153 0/1:11,4:15:86:86,0,200 0/1:13,3:16:46:46,0,349 0/1:13,1:14:7:7,0,235 +chr11 1271218 rs61430934 GCCA G 412.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.914;DB;DP=106;FS=4.150;HaplotypeScore=15.7359;MLEAC=3;MLEAF=0.375;MQ=11.39;MQ0=0;MQRankSum=1.780;QD=5.23;RPA=2,1;RU=CCA;ReadPosRankSum=2.069;SB=-1.441e-03;STR GT:AD:DP:GQ:PL 0/0:27,0:1:3:0,3,58 0/1:14,12:5:99:102,0,111 0/1:15,13:5:54:145,0,54 0/1:10,14:6:57:216,0,57 +chr11 1478133 . G C 55.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.849;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7486;MLEAC=3;MLEAF=0.375;MQ=26.88;MQ0=0;MQRankSum=0.962;QD=3.93;ReadPosRankSum=0.623;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:54:54,0,84 0/1:3,1:4:20:20,0,94 0/1:3,1:4:23:23,0,48 0/0:4,0:4:6:0,6,48 +chr11 1652538 rs10838039 T C 38.56 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.495;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=24.05;MQ0=0;MQRankSum=0.198;QD=7.71;ReadPosRankSum=0.922;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,2:5:6:76,6,0 ./. 0/0:3,0:3:6:0,6,48 0/0:2,0:2:3:0,3,43 +chr11 1661739 rs11037669 G T 30.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=4;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=19.95;MQ0=0;MQRankSum=0.736;QD=7.50;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:34,3,0 1/1:2,1:3:3:29,3,0 ./. +chr11 1905292 rs661348 T C 1171.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.205;DB;DP=138;Dels=0.01;FS=16.573;HaplotypeScore=1.4668;MLEAC=4;MLEAF=0.500;MQ=36.24;MQ0=0;MQRankSum=-5.946;QD=8.49;ReadPosRankSum=0.871;SB=-5.060e+02 GT:AD:DP:GQ:PL 0/1:19,12:31:99:326,0,536 0/1:21,19:40:99:554,0,633 0/1:30,9:39:99:212,0,968 0/1:18,8:26:99:122,0,521 +chr11 1947756 . G T 507.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.062;DP=167;Dels=0.01;FS=12.326;HaplotypeScore=7.2068;MLEAC=4;MLEAF=0.500;MQ=25.54;MQ0=0;MQRankSum=0.288;QD=3.04;ReadPosRankSum=3.782;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,10:42:99:168,0,493 0/1:40,8:48:88:88,0,503 0/1:27,8:35:99:154,0,209 0/1:34,7:41:99:140,0,297 +chr11 1947955 . C G 100.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.033;DP=65;Dels=0.00;FS=30.031;HaplotypeScore=12.1652;MLEAC=3;MLEAF=0.375;MQ=19.26;MQ0=0;MQRankSum=1.358;QD=2.05;ReadPosRankSum=-2.963;SB=-3.624e-01 GT:AD:DP:GQ:PL 0/1:15,4:20:82:82,0,173 0/1:10,2:12:17:17,0,94 0/0:14,2:16:5:0,5,202 0/1:14,2:17:43:43,0,81 +chr11 1955977 . C G 45.17 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.030;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.1182;MLEAC=2;MLEAF=0.250;MQ=25.08;MQ0=0;MQRankSum=1.386;QD=2.66;ReadPosRankSum=0.959;SB=11.97 GT:AD:DP:GQ:PL 0/1:7,1:8:19:19,0,24 0/1:6,3:9:13:67,0,13 0/0:15,0:15:21:0,21,189 0/0:4,0:6:9:0,9,103 +chr11 1959598 . A C 45.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.917;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=15.1000;MLEAC=3;MLEAF=0.375;MQ=20.66;MQ0=0;MQRankSum=0.849;QD=1.74;ReadPosRankSum=-0.713;SB=-9.188e-01 GT:AD:DP:GQ:PL 0/1:8,2:10:26:26,0,36 0/1:5,2:7:22:42,0,22 0/0:13,0:13:12:0,12,114 0/1:6,1:8:20:20,0,60 +chr11 1997159 . T A 294.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.479;DP=227;Dels=0.01;FS=38.391;HaplotypeScore=11.0015;MLEAC=3;MLEAF=0.375;MQ=24.49;MQ0=0;MQRankSum=3.930;QD=1.70;ReadPosRankSum=-0.186;SB=0.382 GT:AD:DP:GQ:PL 0/1:47,4:52:65:65,0,634 0/0:52,1:54:38:0,38,613 0/1:60,3:64:38:38,0,472 0/1:44,10:55:99:235,0,446 +chr11 2017110 rs2839701 C G 666.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.763;DB;DP=63;Dels=0.00;FS=21.083;HaplotypeScore=4.7953;MLEAC=4;MLEAF=0.500;MQ=32.08;MQ0=0;MQRankSum=2.195;QD=10.58;ReadPosRankSum=-1.291;SB=-2.719e+02 GT:AD:DP:GQ:PL 0/1:6,5:11:99:140,0,100 0/1:10,8:19:99:249,0,172 0/1:13,8:21:99:265,0,235 0/1:8,4:12:55:55,0,68 +chr11 2181236 . A C 46.36 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.659;DP=20;Dels=0.00;FS=2.823;HaplotypeScore=1.0748;MLEAC=3;MLEAF=0.375;MQ=26.70;MQ0=0;MQRankSum=0.474;QD=6.62;ReadPosRankSum=1.066;SB=0.539 GT:AD:DP:GQ:PL 0/0:7,0:7:9:0,9,83 0/1:3,1:4:28:28,0,31 0/0:6,0:6:15:0,15,202 1/1:1,2:3:6:63,6,0 +chr11 2322829 rs11022157 C A 234.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.239;DB;DP=25;Dels=0.04;FS=2.917;HaplotypeScore=0.2416;MLEAC=4;MLEAF=0.500;MQ=35.89;MQ0=0;MQRankSum=-0.537;QD=9.38;ReadPosRankSum=-0.954;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,4:9:99:137,0,134 0/1:1,2:3:28:54,0,28 0/1:3,2:5:62:62,0,72 0/1:6,1:7:24:24,0,188 +chr11 2323053 . C A 44.43 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.385;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4311;MLEAC=2;MLEAF=0.250;MQ=28.97;MQ0=0;MQRankSum=0.078;QD=1.71;ReadPosRankSum=-0.047;SB=-4.536e-02 GT:AD:DP:GQ:PL 0/0:11,1:12:1:0,1,238 0/1:7,3:10:59:59,0,102 0/0:16,0:17:42:0,42,449 0/1:14,2:16:25:25,0,250 +chr11 2334911 . G A 81.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.056;DP=42;Dels=0.00;FS=18.092;HaplotypeScore=0.7230;MLEAC=1;MLEAF=0.125;MQ=35.95;MQ0=0;MQRankSum=-1.892;QD=8.11;ReadPosRankSum=0.498;SB=-3.173e+00 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,254 0/0:6,0:6:15:0,15,201 0/0:17,1:18:16:0,16,513 0/1:6,4:10:99:117,0,119 +chr11 2441646 rs11607968 G T 158.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.573;DB;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=2.3253;MLEAC=1;MLEAF=0.125;MQ=36.43;MQ0=0;MQRankSum=-1.460;QD=11.36;ReadPosRankSum=-0.781;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:33:0,33,446 0/1:6,7:13:99:195,0,203 0/0:21,0:21:60:0,60,826 0/0:13,0:13:33:0,33,444 +chr11 2443211 . G C 91.28 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.668;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.2892;MLEAC=7;MLEAF=0.875;MQ=20.74;MQ0=0;MQRankSum=1.098;QD=9.13;ReadPosRankSum=-1.668;SB=-5.498e+01 GT:AD:DP:GQ:PL 1/1:1,1:2:3:31,3,0 1/1:1,1:2:3:23,3,0 0/1:2,1:3:15:15,0,53 1/1:1,2:3:6:63,6,0 +chr11 2683357 rs760419 A G 295.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.283;DB;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.8923;MLEAC=1;MLEAF=0.125;MQ=33.38;MQ0=0;MQRankSum=-1.031;QD=10.57;ReadPosRankSum=-0.186;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,11:28:99:332,0,408 0/0:35,0:35:90:0,90,1100 0/0:24,0:24:60:0,60,775 0/0:25,0:25:69:0,69,814 +chr11 3412603 . A G 71.05 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.609;DP=79;Dels=0.00;FS=4.750;HaplotypeScore=1.8005;MLEAC=2;MLEAF=0.333;MQ=14.79;MQ0=0;MQRankSum=3.240;QD=1.82;ReadPosRankSum=-0.249;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:21,3:24:47:82,0,47 0/0:17,3:20:3:0,3,33 0/1:12,3:15:26:26,0,27 +chr11 3716740 . T A 1692.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.777;DP=253;Dels=0.01;FS=176.953;HaplotypeScore=23.6748;MLEAC=4;MLEAF=0.500;MQ=30.49;MQ0=0;MQRankSum=-2.691;QD=6.69;ReadPosRankSum=2.311;SB=-4.958e-03 GT:AD:DP:GQ:PL 0/1:32,23:55:99:574,0,305 0/1:50,15:65:99:300,0,596 0/1:52,26:78:99:528,0,587 0/1:36,17:53:99:333,0,413 +chr11 4232718 rs7483001 C T 399.55 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.682;DB;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.5957;MLEAC=4;MLEAF=0.667;MQ=15.58;MQ0=0;MQRankSum=0.323;QD=4.81;ReadPosRankSum=0.849;SB=-1.603e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:15:156,15,0 0/1:21,14:35:99:135,0,143 0/1:3,17:20:21:150,0,21 ./. +chr11 4496613 rs9633905 C A 556.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.020;DB;DP=155;Dels=0.00;FS=2.874;HaplotypeScore=1.1958;MLEAC=4;MLEAF=0.500;MQ=16.34;MQ0=0;MQRankSum=0.113;QD=3.59;ReadPosRankSum=2.031;SB=-2.560e+02 GT:AD:DP:GQ:PL 0/1:17,21:38:99:221,0,137 0/1:16,22:38:76:95,0,76 0/1:30,14:44:99:122,0,168 0/1:20,15:35:70:161,0,70 +chr11 4623447 . C T 349.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.955;DP=158;Dels=0.00;FS=94.605;HaplotypeScore=3.6252;MLEAC=4;MLEAF=0.500;MQ=33.03;MQ0=0;MQRankSum=-6.014;QD=2.21;ReadPosRankSum=-1.407;SB=-1.297e-02 GT:AD:DP:GQ:PL 0/1:32,10:42:99:169,0,1019 0/1:30,4:34:35:35,0,727 0/1:36,6:42:60:60,0,1009 0/1:32,8:40:99:128,0,670 +chr11 4827322 rs934485 A G 149.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.973;DB;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3602;MLEAC=2;MLEAF=0.250;MQ=28.22;MQ0=0;MQRankSum=-0.573;QD=4.04;ReadPosRankSum=0.900;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,5:20:99:116,0,380 0/1:11,5:17:75:75,0,189 0/0:22,0:22:54:0,54,652 0/0:9,0:9:24:0,24,248 +chr11 4870350 . C A 108.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.492;DP=154;Dels=0.01;FS=40.946;HaplotypeScore=12.2690;MLEAC=3;MLEAF=0.375;MQ=29.76;MQ0=0;MQRankSum=-2.854;QD=1.00;ReadPosRankSum=0.348;SB=0.116 GT:AD:DP:GQ:PL 0/1:32,5:38:62:62,0,767 0/1:32,6:39:52:52,0,674 0/0:43,2:45:55:0,55,942 0/1:27,4:31:38:38,0,436 +chr11 4964627 rs2595993 C A 1496.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.002;DB;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.6000;MLEAC=8;MLEAF=1.00;MQ=33.54;MQ0=0;MQRankSum=2.833;QD=30.53;ReadPosRankSum=0.391;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:3,11:14:33:445,33,0 1/1:3,14:17:42:548,42,0 1/1:1,10:11:30:400,30,0 1/1:3,4:7:12:142,12,0 +chr11 4965239 rs2570581 G T 1017.59 . AC=8;AF=1.00;AN=8;DB;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9175;MLEAC=8;MLEAF=1.00;MQ=33.42;MQ0=0;QD=30.84;SB=-8.297e+01 GT:AD:DP:GQ:PL 1/1:1,7:8:21:229,21,0 1/1:0,13:13:39:509,39,0 1/1:3,7:10:21:277,21,0 1/1:1,1:2:3:41,3,0 +chr11 5323247 . T A 153.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.248;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.9482;MLEAC=4;MLEAF=0.500;MQ=30.61;MQ0=0;MQRankSum=-2.339;QD=1.90;ReadPosRankSum=3.107;SB=-3.876e-01 GT:AD:DP:GQ:PL 0/1:22,7:29:99:144,0,342 0/0:24,2:26:1:0,1,664 0/1:25,2:28:6:6,0,545 0/1:19,4:24:43:43,0,560 +chr11 5344552 rs7934105 C T 1167.57 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.223;DB;DP=41;Dels=0.00;FS=10.000;HaplotypeScore=1.8784;MLEAC=8;MLEAF=1.00;MQ=28.91;MQ0=0;MQRankSum=3.223;QD=28.48;ReadPosRankSum=-0.879;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,8:9:24:262,24,0 1/1:1,16:17:48:559,48,0 1/1:0,11:11:30:349,30,0 1/1:3,1:4:3:36,3,0 +chr11 5344592 rs11036814 A C 377.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.437;DB;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.4950;MLEAC=1;MLEAF=0.125;MQ=38.98;MQ0=0;MQRankSum=-1.948;QD=19.85;ReadPosRankSum=-0.206;SB=-1.178e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:57:0,57,756 0/1:7,12:19:99:413,0,211 0/0:15,0:15:45:0,45,585 0/0:4,0:4:12:0,12,161 +chr11 5383798 rs4910770 C G 367.53 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.011;DB;DP=25;Dels=0.04;FS=8.239;HaplotypeScore=1.2334;MLEAC=7;MLEAF=0.875;MQ=23.56;MQ0=0;MQRankSum=0.529;QD=14.70;ReadPosRankSum=1.482;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,3:4:30:55,0,30 1/1:2,5:7:15:156,15,0 1/1:3,3:6:6:61,6,0 1/1:1,6:7:12:139,12,0 +chr11 5452373 . C G 112.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.947;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=13.9571;MLEAC=3;MLEAF=0.375;MQ=25.69;MQ0=0;MQRankSum=1.519;QD=2.81;ReadPosRankSum=-1.079;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:14:14,0,119 0/1:14,4:18:98:98,0,131 0/1:12,2:14:43:43,0,67 0/0:16,0:16:12:0,12,118 +chr11 5529865 rs186434 G A 4263.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.438;DB;DP=146;Dels=0.00;FS=10.572;HaplotypeScore=3.4686;MLEAC=8;MLEAF=1.00;MQ=31.86;MQ0=0;MQRankSum=0.581;QD=29.20;ReadPosRankSum=3.208;SB=-9.721e+02 GT:AD:DP:GQ:PL 1/1:3,38:42:99:1326,111,0 1/1:6,32:38:73:1058,73,0 1/1:3,28:31:84:1046,84,0 1/1:8,27:35:10:833,10,0 +chr11 5566489 rs10769054 C T 1913.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.760;DB;DP=178;Dels=0.01;FS=3.568;HaplotypeScore=2.0832;MLEAC=4;MLEAF=0.500;MQ=38.60;MQ0=0;MQRankSum=-4.578;QD=10.75;ReadPosRankSum=0.365;SB=-8.560e+02 GT:AD:DP:GQ:PL 0/1:28,9:37:99:243,0,921 0/1:23,22:46:99:637,0,778 0/1:29,23:52:99:625,0,1023 0/1:24,17:41:99:451,0,765 +chr11 5602679 rs892336 T C 10456.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=8.105;DB;DP=326;Dels=0.00;FS=39.691;HaplotypeScore=0.9821;MLEAC=8;MLEAF=1.00;MQ=34.33;MQ0=0;MQRankSum=6.111;QD=32.07;ReadPosRankSum=5.349;SB=-4.435e+03 GT:AD:DP:GQ:PL 1/1:3,68:71:99:2515,205,0 1/1:14,57:71:85:2107,85,0 1/1:14,91:105:99:3227,171,0 1/1:3,76:79:99:2607,216,0 +chr11 5719714 . C A 161.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.936;DP=61;Dels=0.05;FS=35.607;HaplotypeScore=7.0590;MLEAC=4;MLEAF=0.500;MQ=25.18;MQ0=0;MQRankSum=-0.801;QD=2.65;ReadPosRankSum=-0.550;SB=0.073 GT:AD:DP:GQ:PL 0/1:16,2:18:38:38,0,221 0/1:10,2:12:17:17,0,71 0/1:11,5:16:81:81,0,185 0/1:9,3:12:68:68,0,112 +chr11 6291659 rs12364575 G C 1618.11 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.875;DB;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=4.0546;MLEAC=5;MLEAF=0.625;MQ=35.73;MQ0=0;MQRankSum=-4.041;QD=15.86;ReadPosRankSum=0.602;SB=-4.201e+01 GT:AD:DP:GQ:PL 1/1:5,18:23:4:618,4,0 0/1:14,10:24:99:293,0,458 0/1:20,10:30:99:292,0,614 0/1:10,14:24:99:458,0,250 +chr11 6431861 . G C 448.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.901;DP=76;Dels=0.00;FS=71.826;HaplotypeScore=3.2119;MLEAC=4;MLEAF=0.500;MQ=27.74;MQ0=0;MQRankSum=-1.329;QD=5.90;ReadPosRankSum=0.512;SB=0.342 GT:AD:DP:GQ:PL 0/1:11,6:17:99:149,0,197 0/1:9,7:16:99:144,0,153 0/1:12,7:19:99:153,0,228 0/1:19,5:24:45:45,0,291 +chr11 6567884 . C T 408.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.313;DP=107;Dels=0.01;FS=105.679;HaplotypeScore=16.3771;MLEAC=4;MLEAF=0.500;MQ=32.91;MQ0=0;MQRankSum=0.381;QD=3.82;ReadPosRankSum=0.980;SB=-1.225e+00 GT:AD:DP:GQ:PL 0/1:17,2:19:37:37,0,248 0/1:25,6:31:99:128,0,593 0/1:19,7:27:99:130,0,465 0/1:23,6:29:99:156,0,534 +chr11 6632349 rs2555174 C G 102.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.910;DB;DP=106;Dels=0.01;FS=16.266;HaplotypeScore=6.4377;MLEAC=4;MLEAF=0.500;MQ=31.11;MQ0=0;MQRankSum=2.085;QD=0.97;ReadPosRankSum=-0.511;SB=-7.171e+01 GT:AD:DP:GQ:PL 0/1:23,3:26:70:70,0,482 0/1:22,1:23:2:2,0,345 0/1:24,3:28:56:56,0,544 0/1:26,2:28:15:15,0,452 +chr11 6637504 rs2072651 G A 228.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.102;DB;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7385;MLEAC=1;MLEAF=0.125;MQ=37.23;MQ0=0;MQRankSum=-1.416;QD=15.27;ReadPosRankSum=0.589;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,8:15:99:265,0,242 0/0:22,0:22:66:0,66,849 0/0:29,0:29:87:0,87,1120 0/0:28,0:28:81:0,81,1003 +chr11 6662255 rs145099391 G T 33.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.687;DB;DP=162;Dels=0.01;FS=57.072;HaplotypeScore=21.1239;MLEAC=2;MLEAF=0.250;MQ=30.34;MQ0=0;MQRankSum=-2.885;QD=0.40;ReadPosRankSum=0.693;SB=-8.342e-01 GT:AD:DP:GQ:PL 0/1:32,4:37:43:43,0,375 0/1:42,5:47:32:32,0,742 0/0:36,1:38:34:0,34,621 0/0:35,4:39:31:0,31,725 +chr11 6738291 rs11040983 C T 1510.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.503;DB;DP=252;Dels=0.00;FS=1.727;HaplotypeScore=5.3909;MLEAC=3;MLEAF=0.375;MQ=30.40;MQ0=0;MQRankSum=-4.477;QD=8.17;ReadPosRankSum=0.973;SB=-3.840e+02 GT:AD:DP:GQ:PL 0/1:35,29:64:99:594,0,923 0/0:67,0:67:99:0,186,2249 0/1:55,29:84:99:685,0,1503 0/1:21,15:36:99:275,0,470 +chr11 6740462 rs10839604 G C 2228.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.688;DB;DP=363;Dels=0.00;FS=2.778;HaplotypeScore=3.1731;MLEAC=3;MLEAF=0.375;MQ=37.73;MQ0=0;MQRankSum=-6.050;QD=8.99;ReadPosRankSum=0.770;SB=-1.135e+03 GT:AD:DP:GQ:PL 0/1:64,34:99:99:898,0,2075 0/0:115,0:115:99:0,331,4368 0/1:77,36:113:99:1026,0,2259 0/1:24,12:36:99:348,0,631 +chr11 6806388 . C T 163.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.252;DP=255;Dels=0.01;FS=76.822;HaplotypeScore=2.7587;MLEAC=1;MLEAF=0.125;MQ=36.83;MQ0=0;MQRankSum=-0.910;QD=2.78;ReadPosRankSum=1.321;SB=-6.424e+00 GT:AD:DP:GQ:PL 0/0:56,3:59:35:0,35,1672 0/0:65,4:69:50:0,50,2099 0/0:62,5:67:27:0,27,1575 0/1:48,10:58:99:200,0,1238 +chr11 6806505 . C A 74.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.661;DP=73;Dels=0.00;FS=20.572;HaplotypeScore=4.9650;MLEAC=3;MLEAF=0.375;MQ=22.85;MQ0=0;MQRankSum=1.596;QD=1.29;ReadPosRankSum=-2.008;SB=-1.067e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:55:55,0,86 0/1:15,2:17:7:7,0,224 0/1:17,4:21:53:53,0,105 0/0:15,0:15:3:0,3,43 +chr11 7092520 . C G 68.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.994;DP=152;Dels=0.00;FS=27.127;HaplotypeScore=3.5451;MLEAC=3;MLEAF=0.375;MQ=31.63;MQ0=0;MQRankSum=-1.771;QD=0.64;ReadPosRankSum=-1.868;SB=1.11 GT:AD:DP:GQ:PL 0/0:42,3:45:26:0,26,989 0/1:34,5:39:71:71,0,745 0/1:48,5:53:27:27,0,899 0/1:14,1:15:13:13,0,189 +chr11 7647266 . G A 70.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.239;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=31.55;MQ0=0;MQRankSum=-2.836;QD=2.72;ReadPosRankSum=2.763;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:42:0,42,525 0/1:8,3:11:45:45,0,287 0/1:5,2:7:33:33,0,117 0/1:6,2:8:36:36,0,117 +chr11 7655747 . T G 56.55 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.802;DP=97;Dels=0.00;FS=27.049;HaplotypeScore=2.4432;MLEAC=4;MLEAF=0.500;MQ=31.28;MQ0=0;MQRankSum=-2.482;QD=0.58;ReadPosRankSum=-1.143;SB=-1.908e+00 GT:AD:DP:GQ:PL 0/1:20,2:22:9:9,0,455 0/1:24,5:30:73:73,0,609 0/1:27,3:30:10:10,0,484 0/1:14,1:15:5:5,0,252 +chr11 7687669 rs12796110 A C 1538.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.807;DB;DP=106;Dels=0.00;FS=0.955;HaplotypeScore=1.3547;MLEAC=4;MLEAF=0.500;MQ=36.06;MQ0=0;MQRankSum=0.769;QD=19.98;ReadPosRankSum=-0.413;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/0:29,0:29:78:0,78,997 1/1:4,23:27:66:850,66,0 0/1:19,13:32:99:421,0,606 0/1:9,9:18:99:316,0,182 +chr11 7721870 rs10839849 G A 4247.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.564;DB;DP=176;Dels=0.00;FS=1.046;HaplotypeScore=7.0160;MLEAC=8;MLEAF=1.00;MQ=32.19;MQ0=0;MQRankSum=2.891;QD=24.13;ReadPosRankSum=2.533;SB=-1.697e+03 GT:AD:DP:GQ:PL 0/1:12,26:38:1:834,0,1 1/1:11,35:46:99:1182,102,0 1/1:12,39:51:43:1269,43,0 1/1:12,27:41:30:962,30,0 +chr11 8014613 . A G 81.70 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.002;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=8.2824;MLEAC=2;MLEAF=0.250;MQ=29.52;MQ0=0;MQRankSum=-3.305;QD=1.63;ReadPosRankSum=1.310;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,7:20:78:78,0,262 0/1:27,3:30:45:45,0,394 0/0:17,1:18:27:0,27,371 0/0:19,1:20:13:0,13,436 +chr11 8016887 . T G 38.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.474;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=3.4392;MLEAC=3;MLEAF=0.375;MQ=14.07;MQ0=0;MQRankSum=3.382;QD=0.18;ReadPosRankSum=-1.508;SB=13.76 GT:AD:DP:GQ:PL 0/0:52,0:53:12:0,12,107 0/1:69,2:71:29:29,0,163 0/1:75,1:77:2:2,0,222 0/1:71,3:74:48:48,0,176 +chr11 8116920 rs3752898 C G 1203 . AC=8;AF=1.00;AN=8;DB;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.2499;MLEAC=8;MLEAF=1.00;MQ=31.30;MQ0=0;QD=30.85;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,9:11:24:280,24,0 1/1:0,9:9:27:310,27,0 1/1:0,7:7:21:233,21,0 1/1:1,11:12:33:419,33,0 +chr11 8122242 rs72498151 A AG 558.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.791;DB;DP=54;FS=0.000;HaplotypeScore=61.1786;MLEAC=5;MLEAF=0.625;MQ=30.16;MQ0=0;MQRankSum=-3.007;QD=10.34;RPA=4,5;RU=G;ReadPosRankSum=0.061;SB=-1.596e+02;STR GT:AD:DP:GQ:PL 0/1:16,4:18:99:216,0,331 1/1:7,6:7:21:262,21,0 0/1:8,2:10:47:47,0,243 0/1:9,2:10:88:88,0,168 +chr11 8251921 rs3750952 G C 5796.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.618;DB;DP=190;Dels=0.01;FS=1.757;HaplotypeScore=0.7328;MLEAC=7;MLEAF=0.875;MQ=34.53;MQ0=0;MQRankSum=4.087;QD=30.51;ReadPosRankSum=1.053;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1573,123,0 0/1:26,19:45:99:615,0,418 1/1:3,53:56:99:2025,131,0 1/1:1,45:46:99:1583,105,0 +chr11 8641882 rs7943945 G A 749.75 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.820;DB;DP=30;Dels=0.03;FS=47.309;HaplotypeScore=2.6913;MLEAC=7;MLEAF=0.875;MQ=30.20;MQ0=0;MQRankSum=3.502;QD=24.99;ReadPosRankSum=1.592;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,5:8:15:189,15,0 1/1:4,6:10:18:236,18,0 1/1:0,7:7:21:260,21,0 0/1:1,3:4:11:108,0,11 +chr11 8643392 . T A 295.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.217;DP=122;Dels=0.00;FS=7.353;HaplotypeScore=10.1380;MLEAC=4;MLEAF=0.500;MQ=29.04;MQ0=0;MQRankSum=1.210;QD=2.42;ReadPosRankSum=0.734;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,4:26:92:92,0,329 0/1:27,3:30:71:71,0,184 0/1:34,5:40:95:95,0,300 0/1:21,4:26:80:80,0,126 +chr11 8667949 . G A 115.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.211;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.1146;MLEAC=3;MLEAF=0.375;MQ=35.14;MQ0=0;MQRankSum=-4.245;QD=1.06;ReadPosRankSum=-2.198;SB=0.222 GT:AD:DP:GQ:PL 0/1:36,5:42:84:84,0,746 0/0:46,4:51:18:0,18,951 0/1:39,4:44:36:36,0,684 0/1:20,3:23:39:39,0,345 +chr11 8671331 . A G 189.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.829;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=5.5246;MLEAC=4;MLEAF=0.500;MQ=18.23;MQ0=0;MQRankSum=0.530;QD=1.60;ReadPosRankSum=1.126;SB=-9.707e-03 GT:AD:DP:GQ:PL 0/1:26,7:33:28:28,0,134 0/1:24,5:29:11:11,0,116 0/1:23,5:28:71:71,0,144 0/1:18,10:28:58:122,0,58 +chr11 8707147 rs74055106 T C 461.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.086;DB;DP=198;Dels=0.00;FS=6.667;HaplotypeScore=1.4528;MLEAC=1;MLEAF=0.125;MQ=36.29;MQ0=0;MQRankSum=-0.227;QD=9.83;ReadPosRankSum=1.307;SB=-1.530e+02 GT:AD:DP:GQ:PL 0/0:51,0:51:96:0,96,1214 0/1:30,17:47:99:498,0,858 0/0:55,0:55:99:0,135,1864 0/0:45,0:45:99:0,111,1465 +chr11 8717003 rs2270956 C T 4154.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.962;DB;DP=178;Dels=0.00;FS=2.453;HaplotypeScore=0.7151;MLEAC=6;MLEAF=0.750;MQ=37.35;MQ0=0;MQRankSum=-4.308;QD=23.34;ReadPosRankSum=0.688;SB=-8.860e+02 GT:AD:DP:GQ:PL 0/1:28,12:40:99:359,0,1014 0/1:30,18:48:99:550,0,1033 1/1:4,53:57:99:1954,121,0 1/1:0,33:33:99:1291,99,0 +chr11 8729221 rs144734464 C T 193.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.133;DB;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=36.20;MQ0=0;MQRankSum=-2.097;QD=8.05;ReadPosRankSum=-0.080;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:15:0,15,201 0/1:6,4:10:99:135,0,102 0/1:6,3:9:87:87,0,169 0/1:4,1:5:14:14,0,147 +chr11 8946959 . G A 103.28 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.317;DP=48;Dels=0.00;FS=18.223;HaplotypeScore=13.9666;MLEAC=3;MLEAF=0.375;MQ=23.04;MQ0=0;MQRankSum=0.496;QD=2.15;ReadPosRankSum=2.343;SB=12.42 GT:AD:DP:GQ:PL 0/1:9,1:11:7:7,0,130 0/1:10,4:14:66:66,0,104 0/1:9,2:13:32:32,0,112 0/1:7,3:10:40:40,0,76 +chr11 8950885 . G C 138.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.299;DP=52;Dels=0.00;FS=14.182;HaplotypeScore=11.9061;MLEAC=4;MLEAF=0.500;MQ=27.11;MQ0=0;MQRankSum=-2.420;QD=2.67;ReadPosRankSum=1.047;SB=-1.175e-01 GT:AD:DP:GQ:PL 0/1:5,4:9:55:55,0,95 0/1:7,3:10:51:51,0,144 0/1:12,6:19:61:61,0,344 0/1:12,2:14:14:14,0,183 +chr11 8974942 rs117002418 G C 41.28 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.722;DB;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.2474;MLEAC=2;MLEAF=0.250;MQ=34.03;MQ0=0;MQRankSum=-1.588;QD=2.29;ReadPosRankSum=2.050;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:12:30:0,30,388 0/1:7,3:10:58:58,0,176 0/1:6,2:8:24:24,0,137 0/0:2,0:2:6:0,6,83 +chr11 9043350 . G T 183.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.882;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.4918;MLEAC=4;MLEAF=0.500;MQ=29.10;MQ0=0;MQRankSum=-0.789;QD=2.91;ReadPosRankSum=0.603;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,3:16:34:34,0,156 0/1:16,4:20:51:51,0,192 0/1:12,4:16:96:96,0,178 0/1:9,2:11:45:45,0,105 +chr11 9332940 rs10734643 A G 350.83 . AC=6;AF=1.00;AN=6;BaseQRankSum=3.329;DB;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=6;MLEAF=1.00;MQ=13.45;MQ0=0;MQRankSum=-0.586;QD=4.68;ReadPosRankSum=2.805;SB=-1.124e+02 GT:AD:DP:GQ:PL 1/1:4,20:24:12:125,12,0 ./. 1/1:2,26:28:15:186,15,0 1/1:2,21:23:6:77,6,0 +chr11 9534103 rs148786361 G A 1190.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.723;DB;DP=172;Dels=0.00;FS=2.524;HaplotypeScore=0.6025;MLEAC=3;MLEAF=0.375;MQ=34.14;MQ0=0;MQRankSum=1.200;QD=9.68;ReadPosRankSum=1.513;SB=-4.360e+02 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,144,1739 0/1:34,16:50:99:461,0,1008 0/1:30,18:48:99:530,0,801 0/1:17,8:25:99:243,0,483 +chr11 9608376 . A C 132.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.736;DP=109;Dels=0.00;FS=77.524;HaplotypeScore=5.1503;MLEAC=3;MLEAF=0.375;MQ=34.71;MQ0=0;MQRankSum=-1.215;QD=1.73;ReadPosRankSum=1.016;SB=-2.872e-01 GT:AD:DP:GQ:PL 0/1:28,4:32:59:59,0,724 0/0:30,2:32:9:0,9,821 0/1:24,5:29:99:105,0,426 0/1:15,1:16:11:11,0,308 +chr11 9746299 . A C 60.19 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.414;DP=168;Dels=0.00;FS=42.177;HaplotypeScore=6.9548;MLEAC=1;MLEAF=0.125;MQ=33.36;MQ0=0;MQRankSum=-3.748;QD=1.37;ReadPosRankSum=1.991;SB=-7.549e+00 GT:AD:DP:GQ:PL 0/1:38,6:44:95:95,0,732 0/0:44,5:49:5:0,5,934 0/0:54,4:58:7:0,7,1285 0/0:16,1:17:4:0,4,330 +chr11 9769562 rs415895 C G 2942.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=4.439;DB;DP=131;Dels=0.01;FS=13.606;HaplotypeScore=2.2311;MLEAC=7;MLEAF=0.875;MQ=33.60;MQ0=0;MQRankSum=0.048;QD=22.46;ReadPosRankSum=2.327;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:6,24:30:57:763,57,0 0/1:18,12:30:99:300,0,450 1/1:5,30:35:81:1039,81,0 1/1:8,27:35:72:885,72,0 +chr11 10622618 . G C 304.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.489;DP=173;Dels=0.00;FS=47.622;HaplotypeScore=33.1433;MLEAC=4;MLEAF=0.500;MQ=28.14;MQ0=0;MQRankSum=-2.634;QD=1.76;ReadPosRankSum=1.146;SB=-5.714e-02 GT:AD:DP:GQ:PL 0/1:29,8:37:99:155,0,399 0/1:39,4:43:58:58,0,545 0/1:43,5:48:19:19,0,792 0/1:37,8:45:99:115,0,458 +chr11 10655421 . G T 43.47 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.537;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.9347;MLEAC=2;MLEAF=0.250;MQ=29.92;MQ0=0;MQRankSum=-1.668;QD=1.67;ReadPosRankSum=1.143;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,5:21:72:72,0,366 0/0:20,1:21:17:0,17,445 0/0:20,0:20:30:0,30,330 0/1:4,1:5:12:12,0,104 +chr11 10772933 . G A,T 57.16 . AC=4,1;AF=0.500,0.125;AN=8;BaseQRankSum=-2.299;DP=29;Dels=0.00;FS=9.084;HaplotypeScore=6.3935;MLEAC=4,1;MLEAF=0.500,0.125;MQ=23.59;MQ0=0;MQRankSum=-0.535;QD=1.97;ReadPosRankSum=-0.094;SB=-2.483e-02 GT:AD:DP:GQ:PL 0/1:5,2,0:7:32:32,0,79,41,85,127 0/1:5,1,0:6:19:19,0,71,25,74,98 1/2:5,2,2:9:14:63,43,40,20,0,14 0/1:5,2,0:7:20:20,0,70,26,73,99 +chr11 10941918 rs10500734 A C 48.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.733;DB;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.2868;MLEAC=4;MLEAF=1.00;MQ=14.49;MQ0=0;MQRankSum=1.733;QD=4.36;ReadPosRankSum=-0.898;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:4,1:5:3:39,3,0 1/1:5,1:6:3:42,3,0 ./. +chr11 12183881 . G T 259.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.969;DP=138;Dels=0.01;FS=53.693;HaplotypeScore=6.3510;MLEAC=4;MLEAF=0.500;MQ=32.17;MQ0=0;MQRankSum=-2.410;QD=1.88;ReadPosRankSum=2.618;SB=-4.433e-01 GT:AD:DP:GQ:PL 0/1:29,6:35:99:142,0,645 0/1:30,3:33:9:9,0,524 0/1:32,6:38:98:98,0,719 0/1:26,4:31:52:52,0,411 +chr11 12248515 rs2706643 T G 585.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.362;DB;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=3.0474;MLEAC=3;MLEAF=0.375;MQ=35.19;MQ0=0;MQRankSum=-1.651;QD=12.73;ReadPosRankSum=0.988;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,6:14:99:125,0,240 0/0:17,0:17:51:0,51,657 0/1:14,7:21:99:207,0,386 0/1:2,9:11:47:297,0,47 +chr11 12264140 rs880963 A C 1299.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.242;DB;DP=88;Dels=0.05;FS=11.043;HaplotypeScore=1.1328;MLEAC=4;MLEAF=0.500;MQ=32.64;MQ0=0;MQRankSum=-2.776;QD=14.77;ReadPosRankSum=1.244;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,15:22:99:419,0,154 0/1:12,8:20:99:260,0,205 0/1:12,12:24:99:388,0,310 0/1:9,9:18:99:275,0,211 +chr11 12316168 . T C 216.98 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.089;DP=234;Dels=0.00;FS=129.193;HaplotypeScore=2.5365;MLEAC=4;MLEAF=0.500;MQ=33.20;MQ0=0;MQRankSum=-7.101;QD=0.93;ReadPosRankSum=1.513;SB=-4.087e-01 GT:AD:DP:GQ:PL 0/1:43,10:53:99:172,0,1084 0/1:61,9:70:61:61,0,1668 0/1:57,7:64:15:15,0,1663 0/1:41,6:47:11:11,0,1059 +chr11 12495454 . T C 37.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.841;DP=182;Dels=0.00;FS=84.525;HaplotypeScore=4.3025;MLEAC=2;MLEAF=0.250;MQ=29.03;MQ0=0;MQRankSum=1.248;QD=0.37;ReadPosRankSum=-2.580;SB=-2.848e+00 GT:AD:DP:GQ:PL 0/1:41,5:46:46:46,0,941 0/0:47,3:50:25:0,25,1059 0/1:49,5:54:31:31,0,1174 0/0:30,2:32:1:0,1,652 +chr11 12539401 . A C 81.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.427;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=35.66;MQ0=0;MQRankSum=-0.377;QD=2.80;ReadPosRankSum=-0.226;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:18:0,18,228 0/1:8,3:11:92:92,0,103 0/1:10,1:11:6:6,0,233 0/1:6,1:7:25:25,0,55 +chr11 12951623 rs2245140 A C 322.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.029;DB;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=0.7487;MLEAC=1;MLEAF=0.125;MQ=36.76;MQ0=0;MQRankSum=0.086;QD=20.13;ReadPosRankSum=2.230;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:25,0:25:66:0,66,876 0/1:5,10:15:99:358,0,116 0/0:17,0:17:51:0,51,638 0/0:6,0:6:15:0,15,204 +chr11 13376747 . T A 383.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.334;DP=105;Dels=0.02;FS=0.000;HaplotypeScore=12.6872;MLEAC=4;MLEAF=0.500;MQ=27.42;MQ0=0;MQRankSum=-4.965;QD=3.65;ReadPosRankSum=4.930;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,9:29:99:117,0,291 0/1:18,7:27:78:78,0,313 0/1:18,10:28:99:194,0,259 0/1:12,4:19:37:37,0,106 +chr11 14282164 . C G 57.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.614;DP=273;Dels=0.00;FS=22.028;HaplotypeScore=8.5013;MLEAC=1;MLEAF=0.125;MQ=36.97;MQ0=0;MQRankSum=0.179;QD=0.98;ReadPosRankSum=-2.481;SB=0.569 GT:AD:DP:GQ:PL 0/0:77,2:79:99:0,124,2314 0/0:60,2:62:63:0,63,1581 0/0:73,0:73:99:0,187,2400 0/1:53,6:59:94:94,0,1374 +chr11 14520437 . T G 71.49 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.325;DP=48;Dels=0.04;FS=15.600;HaplotypeScore=23.1540;MLEAC=2;MLEAF=0.250;MQ=24.79;MQ0=0;MQRankSum=0.025;QD=2.31;ReadPosRankSum=2.075;SB=23.20 GT:AD:DP:GQ:PL 0/0:7,0:8:9:0,9,96 0/1:10,3:13:59:59,0,112 0/1:14,3:17:53:53,0,140 0/0:8,0:8:9:0,9,91 +chr11 14520495 rs184176495 C G 141.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.053;DB;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=6.7985;MLEAC=4;MLEAF=0.500;MQ=30.83;MQ0=0;MQRankSum=1.257;QD=4.73;ReadPosRankSum=-0.796;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:15:15,0,174 0/0:16,1:18:6:0,6,315 0/1:11,5:17:99:105,0,134 1/1:2,2:4:6:66,6,0 +chr11 14540942 rs2305305 C T 552.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.762;DB;DP=109;Dels=0.00;FS=1.984;HaplotypeScore=2.5442;MLEAC=3;MLEAF=0.375;MQ=29.72;MQ0=0;MQRankSum=-0.219;QD=8.25;ReadPosRankSum=1.073;SB=-1.887e+02 GT:AD:DP:GQ:PL 0/1:22,9:31:99:180,0,609 0/0:42,0:42:99:0,99,1135 0/1:19,11:30:99:318,0,444 0/1:2,4:6:24:98,0,24 +chr11 16205595 rs1455111 C T 113.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.569;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.2844;MLEAC=2;MLEAF=0.250;MQ=33.50;MQ0=0;MQRankSum=0.498;QD=7.06;ReadPosRankSum=-0.569;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,2:7:61:61,0,116 0/1:6,3:9:92:92,0,190 0/0:8,0:8:12:0,12,166 0/0:2,0:2:3:0,3,39 +chr11 17408685 . A T 119.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.431;DP=125;Dels=0.00;FS=56.963;HaplotypeScore=3.3683;MLEAC=4;MLEAF=0.500;MQ=33.53;MQ0=0;MQRankSum=-0.107;QD=1.26;ReadPosRankSum=1.831;SB=-1.666e+00 GT:AD:DP:GQ:PL 0/1:31,4:35:52:52,0,519 0/1:20,3:24:41:41,0,434 0/0:28,2:30:2:0,2,544 0/1:32,4:36:67:67,0,574 +chr11 17415198 . T G 31.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.970;DP=97;Dels=0.04;FS=2.394;HaplotypeScore=15.7736;MLEAC=4;MLEAF=0.500;MQ=22.98;MQ0=0;MQRankSum=-0.711;QD=0.47;ReadPosRankSum=0.466;SB=-4.042e-02 GT:AD:DP:GQ:PL 0/1:15,5:20:45:45,0,214 0/1:18,1:19:4:4,0,185 0/1:25,3:28:21:21,0,232 0/0:23,3:26:0:0,0,186 +chr11 17449510 . C A 47.43 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.348;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.2872;MLEAC=3;MLEAF=0.375;MQ=32.33;MQ0=0;MQRankSum=-2.873;QD=1.36;ReadPosRankSum=1.263;SB=-9.749e-01 GT:AD:DP:GQ:PL 0/1:12,1:13:4:4,0,191 0/1:8,2:11:12:12,0,184 0/0:11,1:12:21:0,21,238 0/1:8,3:11:72:72,0,107 +chr11 17537720 rs150028032 G A 392.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.752;DB;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.6614;MLEAC=3;MLEAF=0.375;MQ=35.12;MQ0=0;MQRankSum=0.394;QD=6.66;ReadPosRankSum=1.403;SB=-4.170e+01 GT:AD:DP:GQ:PL 0/1:14,5:19:99:153,0,382 0/0:23,0:23:54:0,54,703 0/1:12,7:19:99:232,0,156 0/1:16,4:21:51:51,0,449 +chr11 17544500 . T C 31.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.319;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.6278;MLEAC=2;MLEAF=0.250;MQ=25.89;MQ0=0;MQRankSum=-0.383;QD=2.89;ReadPosRankSum=1.575;SB=-1.661e+00 GT:AD:DP:GQ:PL 0/0:5,1:6:15:0,15,181 0/0:8,0:8:15:0,15,159 0/1:6,2:8:49:49,0,94 0/1:2,1:3:24:24,0,24 +chr11 17553112 . T G 37.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.557;DP=71;Dels=0.00;FS=4.729;HaplotypeScore=3.8982;MLEAC=3;MLEAF=0.375;MQ=35.29;MQ0=0;MQRankSum=-1.273;QD=0.82;ReadPosRankSum=-2.292;SB=0.822 GT:AD:DP:GQ:PL 0/1:8,2:10:34:34,0,171 0/1:14,3:17:23:23,0,337 0/0:24,1:25:19:0,19,632 0/1:16,2:19:24:24,0,481 +chr11 17581095 . G T 771.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.644;DP=157;Dels=0.00;FS=159.553;HaplotypeScore=1.9800;MLEAC=4;MLEAF=0.500;MQ=32.10;MQ0=0;MQRankSum=-4.127;QD=4.91;ReadPosRankSum=2.917;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,10:41:99:217,0,760 0/1:27,8:36:99:132,0,561 0/1:35,8:43:99:132,0,747 0/1:23,14:37:99:333,0,505 +chr11 17591961 rs10832802 C T 709.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.079;DB;DP=77;Dels=0.00;FS=2.792;HaplotypeScore=3.5261;MLEAC=4;MLEAF=0.500;MQ=29.66;MQ0=0;MQRankSum=1.309;QD=9.22;ReadPosRankSum=0.115;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,8:18:99:247,0,246 0/1:13,4:17:95:95,0,272 0/1:13,10:23:99:271,0,301 0/1:13,6:19:99:139,0,176 +chr11 17598124 . C T 186.14 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.629;DP=87;Dels=0.01;FS=83.664;HaplotypeScore=1.7342;MLEAC=3;MLEAF=0.375;MQ=34.88;MQ0=0;MQRankSum=-3.678;QD=2.74;ReadPosRankSum=0.807;SB=-2.226e+00 GT:AD:DP:GQ:PL 0/0:17,1:18:13:0,13,383 0/1:17,2:19:18:18,0,380 0/1:27,6:33:99:104,0,689 0/1:11,5:16:99:107,0,213 +chr11 17618679 . T A 40.33 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.608;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9985;MLEAC=2;MLEAF=0.250;MQ=34.70;MQ0=0;MQRankSum=-1.014;QD=2.02;ReadPosRankSum=1.744;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:41:41,0,189 0/0:8,0:8:15:0,15,170 0/1:8,2:10:40:40,0,156 0/0:4,0:4:6:0,6,82 +chr11 17632651 rs7111528 C T 254.33 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.029;DB;DP=33;Dels=0.00;FS=1.664;HaplotypeScore=3.4193;MLEAC=5;MLEAF=0.625;MQ=21.09;MQ0=0;MQRankSum=1.768;QD=9.08;ReadPosRankSum=1.026;SB=-9.048e+01 GT:AD:DP:GQ:PL 0/1:5,3:8:65:65,0,72 0/1:3,6:9:16:92,0,16 1/1:5,6:11:12:142,12,0 0/0:5,0:5:3:0,3,24 +chr11 17667267 rs35734300 G T 65.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.714;DB;DP=84;Dels=0.02;FS=1.846;HaplotypeScore=3.7222;MLEAC=1;MLEAF=0.125;MQ=31.95;MQ0=0;MQRankSum=-0.347;QD=3.30;ReadPosRankSum=-1.591;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:15,5:20:99:102,0,398 0/0:15,0:15:39:0,39,480 0/0:25,0:25:69:0,69,823 0/0:20,0:22:54:0,54,635 +chr11 17793276 . A G 57.33 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.774;DP=99;Dels=0.02;FS=53.230;HaplotypeScore=18.6987;MLEAC=4;MLEAF=0.500;MQ=24.64;MQ0=0;MQRankSum=-1.122;QD=0.58;ReadPosRankSum=1.602;SB=-2.002e+00 GT:AD:DP:GQ:PL 0/1:17,2:19:17:17,0,334 0/1:18,3:21:37:37,0,295 0/1:31,3:34:7:7,0,394 0/1:17,6:23:38:38,0,129 +chr11 17799470 . C G 62.06 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.852;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.8914;MLEAC=2;MLEAF=0.250;MQ=31.81;MQ0=0;MQRankSum=-1.111;QD=1.51;ReadPosRankSum=0.351;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:33:0,33,372 0/0:17,1:18:8:0,8,264 0/1:16,2:18:23:23,0,140 0/1:17,6:23:80:80,0,282 +chr11 18048063 . A T 49.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.599;DP=156;Dels=0.00;FS=29.815;HaplotypeScore=2.7431;MLEAC=1;MLEAF=0.125;MQ=36.49;MQ0=0;MQRankSum=-2.187;QD=2.27;ReadPosRankSum=-1.682;SB=-3.767e+00 GT:AD:DP:GQ:PL 0/0:38,2:40:29:0,29,1098 0/0:39,1:40:81:0,81,1355 0/0:52,2:54:68:0,68,1469 0/1:17,4:22:86:86,0,301 +chr11 18175030 rs2445197 C T 555.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.781;DB;DP=41;Dels=0.00;FS=6.145;HaplotypeScore=1.7563;MLEAC=3;MLEAF=0.375;MQ=36.02;MQ0=0;MQRankSum=-0.439;QD=17.90;ReadPosRankSum=-0.099;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,11:12:0:405,0,0 0/0:10,0:10:30:0,30,400 0/1:9,1:10:18:18,0,223 0/1:4,5:9:55:174,0,55 +chr11 18290737 rs145097411 T G 60.98 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.988;DB;DP=16;Dels=0.00;FS=4.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.38;MQ0=0;MQRankSum=1.537;QD=10.16;ReadPosRankSum=0.406;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:3,3:6:9:93,9,0 +chr11 18317458 rs2305564 T A 305 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.158;DB;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.4079;MLEAC=1;MLEAF=0.125;MQ=35.90;MQ0=0;MQRankSum=-1.147;QD=14.52;ReadPosRankSum=-0.008;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:29,0:29:78:0,78,1009 0/1:11,10:21:99:341,0,296 0/0:17,0:17:45:0,45,566 0/0:7,0:7:21:0,21,271 +chr11 18460287 . T C 63.22 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.000;DP=9;Dels=0.00;FS=9.700;HaplotypeScore=2.6202;MLEAC=5;MLEAF=0.833;MQ=19.49;MQ0=0;MQRankSum=1.300;QD=9.03;ReadPosRankSum=0.937;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:30,3,0 1/1:2,3:5:9:73,9,0 ./. 0/0:1,0:1:3:0,3,30 +chr11 18600278 . G A 30.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.114;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=35.21;MQ0=0;MQRankSum=0.529;QD=0.83;ReadPosRankSum=-2.272;SB=-1.084e-02 GT:AD:DP:GQ:PL 0/0:21,0:21:48:0,48,594 0/1:23,3:26:64:64,0,438 0/0:36,0:36:84:0,84,1005 0/1:10,1:11:5:5,0,242 +chr11 18732119 rs4237727 T G 3598.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.039;DB;DP=105;Dels=0.01;FS=4.918;HaplotypeScore=3.0336;MLEAC=8;MLEAF=1.00;MQ=34.45;MQ0=0;MQRankSum=3.178;QD=34.27;ReadPosRankSum=0.078;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:2,26:28:78:1015,78,0 1/1:3,23:26:69:871,69,0 1/1:1,22:23:36:808,36,0 1/1:1,26:27:72:904,72,0 +chr11 18737065 . A T 521.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.003;DP=131;Dels=0.00;FS=40.588;HaplotypeScore=9.4024;MLEAC=4;MLEAF=0.500;MQ=26.70;MQ0=0;MQRankSum=-3.246;QD=3.98;ReadPosRankSum=1.727;SB=-6.394e+01 GT:AD:DP:GQ:PL 0/1:20,4:24:72:72,0,233 0/1:21,10:32:96:96,0,274 0/1:26,14:40:99:211,0,366 0/1:24,11:35:99:185,0,317 +chr11 18793399 rs4075663 G A 702.33 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.662;DB;DP=52;Dels=0.02;FS=2.318;HaplotypeScore=3.8861;MLEAC=4;MLEAF=0.500;MQ=31.72;MQ0=0;MQRankSum=3.705;QD=16.33;ReadPosRankSum=0.211;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/0:9,0:9:6:0,6,61 1/1:1,12:13:36:469,36,0 0/1:13,5:18:99:177,0,163 0/1:7,4:11:99:103,0,113 +chr11 18909033 . C T 63.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.437;DP=99;Dels=0.00;FS=24.023;HaplotypeScore=8.5268;MLEAC=2;MLEAF=0.250;MQ=15.44;MQ0=0;MQRankSum=1.975;QD=1.54;ReadPosRankSum=3.142;SB=1.01 GT:AD:DP:GQ:PL 0/1:17,2:19:32:32,0,63 0/1:17,5:22:72:72,0,116 0/0:26,2:28:15:0,15,154 0/0:29,1:30:9:0,9,88 +chr11 18932956 . C T 116.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.821;DP=212;Dels=0.00;FS=20.421;HaplotypeScore=1.0740;MLEAC=3;MLEAF=0.375;MQ=11.48;MQ0=0;MQRankSum=3.978;QD=0.73;ReadPosRankSum=-0.723;SB=2.40 GT:AD:DP:GQ:PL 0/1:49,2:51:42:42,0,128 0/1:48,1:49:27:27,0,117 0/0:51,0:51:3:0,3,31 0/1:58,3:61:89:89,0,197 +chr11 19171021 rs3802796 C T 472.53 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.708;DB;DP=18;Dels=0.00;FS=6.532;HaplotypeScore=0.5784;MLEAC=6;MLEAF=1.00;MQ=28.99;MQ0=0;MQRankSum=2.920;QD=26.25;ReadPosRankSum=-0.584;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,6:7:18:208,18,0 1/1:2,5:7:15:187,15,0 1/1:1,3:4:9:115,9,0 ./. +chr11 19246590 rs793276 C T 818.23 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.053;DB;DP=30;Dels=0.00;FS=17.993;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=32.97;MQ0=0;MQRankSum=3.119;QD=27.27;ReadPosRankSum=-1.346;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:24:297,24,0 1/1:4,7:11:21:279,21,0 1/1:1,4:5:9:120,9,0 1/1:1,4:5:12:161,12,0 +chr11 20117232 rs2289566 T C 3748.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.647;DB;DP=214;Dels=0.00;FS=2.693;HaplotypeScore=1.5341;MLEAC=4;MLEAF=0.500;MQ=35.95;MQ0=0;MQRankSum=-2.006;QD=23.28;ReadPosRankSum=-0.930;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:99:1754,107,0 0/0:53,0:53:99:0,156,2006 0/1:31,30:61:99:959,0,921 0/1:19,31:50:99:1035,0,579 +chr11 20129055 . T A 1102.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.480;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.2105;MLEAC=4;MLEAF=0.500;MQ=30.63;MQ0=0;MQRankSum=-4.554;QD=8.48;ReadPosRankSum=4.289;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,9:27:99:208,0,249 0/1:22,13:35:99:303,0,374 0/1:25,13:38:99:299,0,486 0/1:14,16:30:99:335,0,212 +chr11 20129311 rs35891966 G A 1799.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.295;DB;DP=328;Dels=0.00;FS=1.154;HaplotypeScore=7.3339;MLEAC=3;MLEAF=0.375;MQ=36.01;MQ0=0;MQRankSum=-4.150;QD=7.47;ReadPosRankSum=1.277;SB=-4.600e+02 GT:AD:DP:GQ:PL 0/1:59,18:77:99:464,0,1861 0/0:85,1:86:99:0,226,2921 0/1:52,29:83:99:799,0,1537 0/1:58,23:81:99:580,0,1633 +chr11 20408136 rs11025540 G C 72.22 . AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=31.35;MQ0=0;QD=24.07;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:72,6,0 ./. 1/1:0,1:1:3:34,3,0 ./. +chr11 20419028 rs7934372 T C 931.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.403;DB;DP=83;Dels=0.00;FS=12.259;HaplotypeScore=1.8937;MLEAC=5;MLEAF=0.625;MQ=28.58;MQ0=0;MQRankSum=0.123;QD=11.22;ReadPosRankSum=0.979;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,21:24:57:665,57,0 0/1:18,6:24:99:145,0,433 0/1:20,7:27:99:111,0,517 0/1:6,2:8:56:56,0,90 +chr11 20596676 . T C 82.26 . AC=2;AF=0.500;AN=4;BaseQRankSum=-0.370;DP=60;Dels=0.02;FS=7.898;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.500;MQ=14.81;MQ0=0;MQRankSum=2.097;QD=2.06;ReadPosRankSum=3.627;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:14,6:20:20:76,0,20 0/1:15,5:20:41:41,0,54 ./. +chr11 20629164 rs1443551 G A 879.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.258;DB;DP=193;Dels=0.02;FS=5.047;HaplotypeScore=6.0233;MLEAC=3;MLEAF=0.375;MQ=33.84;MQ0=0;MQRankSum=-1.120;QD=6.47;ReadPosRankSum=1.991;SB=-1.640e+02 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,138,1756 0/1:39,18:57:99:517,0,870 0/1:37,14:52:99:319,0,1062 0/1:21,4:25:87:87,0,442 +chr11 20981894 rs2280584 T C 529.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.744;DB;DP=40;Dels=0.00;FS=7.074;HaplotypeScore=1.9231;MLEAC=5;MLEAF=0.625;MQ=28.88;MQ0=0;MQRankSum=-0.231;QD=13.58;ReadPosRankSum=-0.068;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,5:16:99:108,0,219 1/1:0,12:12:33:361,33,0 0/1:6,5:11:99:106,0,126 0/0:1,0:1:3:0,3,29 +chr11 21305564 rs716577 G C 78.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.434;DB;DP=18;Dels=0.00;FS=2.805;HaplotypeScore=0.5914;MLEAC=3;MLEAF=0.375;MQ=24.92;MQ0=0;MQRankSum=0.796;QD=8.72;ReadPosRankSum=-0.478;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,2:5:6:64,6,0 0/0:6,0:6:15:0,15,183 0/1:2,2:4:25:58,0,25 0/0:3,0:3:3:0,3,32 +chr11 21581665 rs7119475 C T 1349.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.200;DB;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.5606;MLEAC=5;MLEAF=0.625;MQ=37.89;MQ0=0;MQRankSum=0.013;QD=15.16;ReadPosRankSum=0.694;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,8:23:99:260,0,507 1/1:1,19:20:57:771,57,0 0/1:26,7:33:99:174,0,839 0/1:7,6:13:99:190,0,170 +chr11 27400404 . T A 175.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.499;DP=84;Dels=0.00;FS=2.402;HaplotypeScore=1.6993;MLEAC=3;MLEAF=0.375;MQ=34.27;MQ0=0;MQRankSum=-3.186;QD=2.98;ReadPosRankSum=3.514;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,1:25:21:0,21,650 0/1:21,7:28:99:107,0,589 0/1:19,4:23:63:63,0,388 0/1:6,2:8:49:49,0,53 +chr11 27402333 . G A 42.77 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.704;DP=79;Dels=0.00;FS=15.397;HaplotypeScore=1.2351;MLEAC=3;MLEAF=0.375;MQ=30.67;MQ0=0;MQRankSum=-1.734;QD=0.76;ReadPosRankSum=3.069;SB=0.135 GT:AD:DP:GQ:PL 0/1:25,4:29:37:37,0,716 0/0:21,2:23:9:0,9,556 0/1:16,3:19:36:36,0,344 0/1:7,1:8:12:12,0,109 +chr11 30942432 . C T 74.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.374;DP=110;Dels=0.00;FS=85.599;HaplotypeScore=7.6338;MLEAC=3;MLEAF=0.375;MQ=33.71;MQ0=0;MQRankSum=-0.815;QD=0.97;ReadPosRankSum=2.695;SB=0.269 GT:AD:DP:GQ:PL 0/0:31,2:33:7:0,7,786 0/1:23,3:26:41:41,0,674 0/1:35,4:39:42:42,0,731 0/1:10,2:12:34:34,0,165 +chr11 31128375 . T C 63.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-6.056;DP=282;Dels=0.00;FS=98.799;HaplotypeScore=5.1349;MLEAC=2;MLEAF=0.250;MQ=36.65;MQ0=0;MQRankSum=-5.794;QD=0.37;ReadPosRankSum=3.293;SB=-1.611e+00 GT:AD:DP:GQ:PL 0/0:74,3:77:87:0,87,2089 0/1:80,11:91:57:57,0,2124 0/1:73,10:83:48:48,0,1991 0/0:29,2:31:75:0,75,982 +chr11 31648724 . G T 113.78 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.142;DP=81;Dels=0.02;FS=7.767;HaplotypeScore=2.2058;MLEAC=4;MLEAF=0.500;MQ=30.98;MQ0=0;MQRankSum=-4.768;QD=1.40;ReadPosRankSum=0.938;SB=-1.368e-01 GT:AD:DP:GQ:PL 0/1:16,3:19:45:45,0,213 0/1:16,6:22:79:79,0,155 0/1:27,5:32:14:14,0,584 0/1:5,1:6:18:18,0,74 +chr11 31815047 . T C 98.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.880;DP=192;Dels=0.00;FS=86.252;HaplotypeScore=12.0158;MLEAC=2;MLEAF=0.250;MQ=36.76;MQ0=0;MQRankSum=-4.857;QD=0.99;ReadPosRankSum=1.833;SB=-2.002e+00 GT:AD:DP:GQ:PL 0/0:47,2:49:43:0,43,1285 0/1:43,8:52:93:93,0,1194 0/0:40,3:43:4:0,4,1155 0/1:43,5:48:46:46,0,1126 +chr11 31815405 . C G 36.74 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.482;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=5.4668;MLEAC=3;MLEAF=0.500;MQ=21.46;MQ0=0;MQRankSum=-1.694;QD=1.27;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:10:10,0,91 0/1:10,1:11:19:19,0,46 0/1:4,3:7:46:46,0,63 ./. +chr11 32954639 . A T 216.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.738;DP=119;Dels=0.02;FS=72.668;HaplotypeScore=9.3164;MLEAC=3;MLEAF=0.375;MQ=30.39;MQ0=0;MQRankSum=-1.238;QD=2.46;ReadPosRankSum=2.568;SB=0.545 GT:AD:DP:GQ:PL 0/1:28,5:33:99:105,0,387 0/1:34,7:41:99:101,0,462 0/0:29,1:31:13:0,13,495 0/1:9,3:12:53:53,0,116 +chr11 32955860 . T A 135.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.988;DP=115;Dels=0.01;FS=27.324;HaplotypeScore=5.0683;MLEAC=2;MLEAF=0.250;MQ=30.23;MQ0=0;MQRankSum=-1.456;QD=2.12;ReadPosRankSum=1.753;SB=16.40 GT:AD:DP:GQ:PL 0/1:31,6:37:87:87,0,631 0/0:38,1:39:29:0,29,602 0/1:22,4:26:90:90,0,288 0/0:11,0:12:15:0,15,164 +chr11 32990763 . A T 179.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.548;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.4932;MLEAC=4;MLEAF=0.500;MQ=25.64;MQ0=0;MQRankSum=-2.660;QD=2.90;ReadPosRankSum=2.686;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:57:57,0,99 0/1:13,4:18:78:78,0,197 0/1:10,7:17:50:50,0,108 0/1:5,2:7:37:37,0,76 +chr11 33080552 rs111322440 T A 225.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.150;DB;DP=128;Dels=0.00;FS=89.907;HaplotypeScore=3.9981;MLEAC=4;MLEAF=0.500;MQ=34.23;MQ0=0;MQRankSum=0.510;QD=1.76;ReadPosRankSum=2.957;SB=-1.187e+00 GT:AD:DP:GQ:PL 0/1:30,3:33:28:28,0,752 0/1:38,5:43:99:103,0,991 0/1:32,6:38:99:132,0,808 0/1:11,2:14:4:4,0,201 +chr11 33605170 . T C 44.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.050;DP=24;Dels=0.00;FS=2.350;HaplotypeScore=0.6775;MLEAC=2;MLEAF=0.250;MQ=24.40;MQ0=0;MQRankSum=0.050;QD=2.97;ReadPosRankSum=-0.750;SB=-2.032e+01 GT:AD:DP:GQ:PL 0/0:5,0:5:9:0,9,97 0/1:5,2:7:40:40,0,55 0/1:6,2:8:45:45,0,91 0/0:4,0:4:6:0,6,52 +chr11 33667729 . C G 30.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.531;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7249;MLEAC=3;MLEAF=0.375;MQ=30.63;MQ0=0;MQRankSum=-0.382;QD=2.06;ReadPosRankSum=0.715;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:26:26,0,74 0/1:4,1:5:19:19,0,68 0/1:3,1:5:27:27,0,35 0/0:2,0:3:3:0,3,32 +chr11 33689712 rs79522431 C T 342.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.800;DB;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.1499;MLEAC=3;MLEAF=0.375;MQ=32.69;MQ0=0;MQRankSum=-4.072;QD=4.18;ReadPosRankSum=1.794;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/0:35,0:35:90:0,90,1156 0/1:25,10:35:99:168,0,600 0/1:21,8:29:99:163,0,702 0/1:12,6:18:55:55,0,319 +chr11 33780116 . C G 58.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.517;DP=183;Dels=0.01;FS=12.365;HaplotypeScore=8.6304;MLEAC=3;MLEAF=0.375;MQ=32.79;MQ0=0;MQRankSum=-1.074;QD=0.67;ReadPosRankSum=0.075;SB=3.26 GT:AD:DP:GQ:PL 0/1:37,3:40:39:39,0,256 0/1:43,5:48:59:59,0,439 0/0:55,2:58:0:0,0,640 0/0:35,0:36:18:0,18,153 +chr11 34097770 . T A 186.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.336;DP=53;Dels=0.04;FS=0.000;HaplotypeScore=7.5244;MLEAC=3;MLEAF=0.375;MQ=19.93;MQ0=0;MQRankSum=-0.322;QD=3.96;ReadPosRankSum=0.415;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,7:17:12:166,0,12 0/1:14,3:17:42:42,0,42 0/1:10,2:12:18:20,0,18 0/0:4,1:5:6:0,6,54 +chr11 34104663 . T A 41.03 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.990;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.3115;MLEAC=4;MLEAF=0.500;MQ=25.56;MQ0=0;MQRankSum=-3.445;QD=1.03;ReadPosRankSum=3.601;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,5:13:1:1,0,192 0/1:10,3:13:34:34,0,211 0/1:6,2:8:33:33,0,96 0/1:4,2:6:13:13,0,62 +chr11 34189389 . A T 73.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.150;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=35.18;MQ0=0;MQRankSum=-2.346;QD=1.33;ReadPosRankSum=-0.732;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:33:33,0,325 0/1:15,1:16:5:5,0,290 0/1:12,1:13:4:4,0,347 0/1:8,3:11:71:71,0,184 +chr11 34673052 rs147272226 GA G 160.95 . AC=1;AF=0.125;AN=8;BaseQRankSum=4.753;DB;DP=97;FS=0.000;HaplotypeScore=21.3291;MLEAC=1;MLEAF=0.125;MQ=35.99;MQ0=0;MQRankSum=-3.508;QD=5.19;ReadPosRankSum=0.505;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:22,8:29:99:206,0,689 0/0:29,0:22:66:0,66,982 0/0:26,0:26:75:0,75,1136 0/0:10,0:8:24:0,24,364 +chr11 34909820 . G A 104.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=-2.159;DP=50;Dels=0.04;FS=13.752;HaplotypeScore=5.6815;MLEAC=3;MLEAF=0.500;MQ=20.37;MQ0=0;MQRankSum=-1.674;QD=2.37;ReadPosRankSum=2.014;SB=-1.096e-02 GT:AD:DP:GQ:PL 0/1:13,5:18:37:37,0,71 0/1:8,4:12:33:33,0,39 0/1:10,4:14:73:73,0,95 ./. +chr11 34929860 rs7110223 A G 983.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.367;DB;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.7405;MLEAC=3;MLEAF=0.375;MQ=35.47;MQ0=0;MQRankSum=-4.540;QD=9.11;ReadPosRankSum=1.023;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,165,2133 0/1:36,13:49:99:341,0,1174 0/1:25,23:48:99:600,0,773 0/1:7,4:11:86:86,0,232 +chr11 35218311 . C A 67.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.167;DP=92;Dels=0.03;FS=30.974;HaplotypeScore=13.5739;MLEAC=3;MLEAF=0.375;MQ=30.35;MQ0=0;MQRankSum=-1.005;QD=1.21;ReadPosRankSum=1.391;SB=0.739 GT:AD:DP:GQ:PL 0/1:20,4:24:40:40,0,335 0/1:22,3:25:36:36,0,391 0/0:35,0:36:57:0,57,688 1/1:3,1:4:3:36,3,0 +chr11 35240846 . G C 84.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.753;DP=97;Dels=0.00;FS=13.256;HaplotypeScore=2.1395;MLEAC=3;MLEAF=0.375;MQ=29.73;MQ0=0;MQRankSum=-0.772;QD=1.04;ReadPosRankSum=0.695;SB=0.210 GT:AD:DP:GQ:PL 0/1:20,3:23:37:37,0,279 0/1:27,3:30:64:64,0,356 0/1:27,2:29:27:27,0,254 0/0:14,1:15:18:0,18,167 +chr11 35308369 rs1042113 T C 1029.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.464;DB;DP=258;Dels=0.00;FS=11.738;HaplotypeScore=3.4782;MLEAC=2;MLEAF=0.250;MQ=40.48;MQ0=0;MQRankSum=-2.183;QD=9.03;ReadPosRankSum=1.971;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:39,21:60:99:664,0,1235 0/1:40,14:54:99:407,0,1275 0/0:84,0:84:99:0,247,3303 0/0:60,0:60:99:0,168,2229 +chr11 35323069 rs112435655 A G 154.51 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.309;DB;DP=95;Dels=0.00;FS=25.373;HaplotypeScore=5.2535;MLEAC=3;MLEAF=0.375;MQ=31.84;MQ0=0;MQRankSum=-0.942;QD=2.41;ReadPosRankSum=2.367;SB=-2.094e+01 GT:AD:DP:GQ:PL 0/0:29,2:31:4:0,4,615 0/1:20,3:24:47:47,0,277 0/1:20,5:25:99:125,0,206 0/1:13,2:15:24:24,0,287 +chr11 35334032 rs56028027 T C 447.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.571;DB;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.2300;MLEAC=2;MLEAF=0.250;MQ=38.57;MQ0=0;MQRankSum=-1.145;QD=8.44;ReadPosRankSum=-0.821;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,10:29:99:323,0,571 0/1:18,6:24:99:166,0,642 0/0:24,0:24:69:0,69,922 0/0:20,0:20:60:0,60,714 +chr11 35496084 . A T 100.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.535;DP=164;Dels=0.01;FS=0.000;HaplotypeScore=6.7538;MLEAC=2;MLEAF=0.250;MQ=33.34;MQ0=0;MQRankSum=-0.778;QD=1.26;ReadPosRankSum=1.344;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,8:40:99:107,0,547 0/0:41,1:42:61:0,61,818 0/0:39,2:41:22:0,22,707 0/1:36,3:39:35:35,0,479 +chr11 35988734 . G C 124.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.041;DP=40;Dels=0.03;FS=25.006;HaplotypeScore=2.8614;MLEAC=4;MLEAF=0.500;MQ=21.44;MQ0=0;MQRankSum=-0.908;QD=3.12;ReadPosRankSum=0.155;SB=-5.345e-02 GT:AD:DP:GQ:PL 0/1:6,5:11:89:93,0,89 0/1:7,3:10:19:19,0,91 0/1:8,2:10:17:17,0,86 0/1:6,2:8:38:38,0,74 +chr11 36250791 . C A 121.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.155;DP=117;Dels=0.03;FS=65.583;HaplotypeScore=12.3138;MLEAC=3;MLEAF=0.375;MQ=25.69;MQ0=0;MQRankSum=4.349;QD=1.41;ReadPosRankSum=-1.359;SB=-8.179e-01 GT:AD:DP:GQ:PL 0/1:22,4:26:95:95,0,266 0/1:25,1:26:6:6,0,253 0/0:29,2:31:13:0,13,463 0/1:28,3:31:62:62,0,253 +chr11 36296096 . C T 301.34 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.433;DP=53;Dels=0.02;FS=9.473;HaplotypeScore=14.7289;MLEAC=4;MLEAF=0.500;MQ=20.18;MQ0=0;MQRankSum=2.695;QD=5.69;ReadPosRankSum=0.471;SB=-9.956e-01 GT:AD:DP:GQ:PL 0/1:7,2:9:17:56,0,17 0/1:10,4:15:15:94,0,15 0/1:12,4:16:50:75,0,50 0/1:6,6:12:5:118,0,5 +chr11 36597734 rs1980131 A G 356.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.934;DB;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.6068;MLEAC=1;MLEAF=0.125;MQ=36.52;MQ0=0;MQRankSum=-1.556;QD=8.92;ReadPosRankSum=-0.056;SB=-1.640e+02 GT:AD:DP:GQ:PL 0/0:36,0:36:93:0,93,1164 0/1:27,13:40:99:393,0,683 0/0:57,0:57:99:0,153,1957 0/0:30,0:30:75:0,75,928 +chr11 43342420 . A T 44.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.794;DP=59;Dels=0.00;FS=2.782;HaplotypeScore=4.4210;MLEAC=4;MLEAF=0.500;MQ=25.10;MQ0=0;MQRankSum=1.296;QD=1.21;ReadPosRankSum=-0.711;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:16:25:25,0,27 0/0:22,0:22:9:0,9,94 0/1:16,1:17:17:25,0,17 1/1:3,1:4:3:38,3,0 +chr11 43427268 rs61883556 G A 947.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.661;DB;DP=144;Dels=0.02;FS=4.750;HaplotypeScore=1.2194;MLEAC=3;MLEAF=0.375;MQ=35.15;MQ0=0;MQRankSum=-3.431;QD=9.48;ReadPosRankSum=1.569;SB=-4.000e+02 GT:AD:DP:GQ:PL 0/1:21,14:35:99:399,0,732 0/0:44,0:44:99:0,117,1442 0/1:24,13:37:99:381,0,702 0/1:16,9:25:99:211,0,352 +chr11 43427495 . A C 491.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.487;DP=111;Dels=0.01;FS=23.274;HaplotypeScore=2.7012;MLEAC=4;MLEAF=0.500;MQ=36.32;MQ0=0;MQRankSum=-1.327;QD=4.43;ReadPosRankSum=1.041;SB=-1.189e-02 GT:AD:DP:GQ:PL 0/1:20,7:27:99:178,0,495 0/1:24,3:27:46:46,0,536 0/1:29,7:36:99:173,0,643 0/1:15,5:20:99:137,0,315 +chr11 43876698 rs11555762 C T 696.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.585;DB;DP=156;Dels=0.01;FS=9.099;HaplotypeScore=1.1203;MLEAC=3;MLEAF=0.375;MQ=31.07;MQ0=0;MQRankSum=-1.265;QD=6.51;ReadPosRankSum=0.333;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,126,1580 0/1:28,9:37:99:150,0,768 0/1:33,16:49:99:437,0,663 0/1:13,7:20:99:153,0,245 +chr11 43905640 . T C 231.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.847;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.5696;MLEAC=3;MLEAF=0.375;MQ=37.05;MQ0=0;MQRankSum=-4.393;QD=1.49;ReadPosRankSum=1.586;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:55,10:65:99:196,0,1318 0/0:54,2:56:55:0,55,1272 0/1:58,5:63:53:53,0,977 0/1:23,4:27:26:26,0,421 +chr11 43911326 . G C 35.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.268;DP=112;Dels=0.02;FS=48.275;HaplotypeScore=12.7407;MLEAC=1;MLEAF=0.125;MQ=32.17;MQ0=0;MQRankSum=-0.474;QD=1.06;ReadPosRankSum=-1.722;SB=-2.649e+00 GT:AD:DP:GQ:PL 0/1:29,4:33:71:71,0,709 0/0:25,2:27:12:0,12,594 0/0:31,1:33:44:0,44,837 0/0:15,2:17:30:0,30,393 +chr11 43940566 rs7926534 T C 5358.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.662;DB;DP=153;Dels=0.00;FS=30.365;HaplotypeScore=0.4998;MLEAC=8;MLEAF=1.00;MQ=34.97;MQ0=0;MQRankSum=2.303;QD=35.02;ReadPosRankSum=2.600;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,40:44:99:1481,99,0 1/1:1,51:52:99:1977,153,0 1/1:4,37:41:82:1344,82,0 1/1:1,15:16:45:556,45,0 +chr11 44080210 rs2074051 T C 2367.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.826;DB;DP=114;Dels=0.01;FS=21.985;HaplotypeScore=12.7940;MLEAC=8;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=1.432;QD=20.77;ReadPosRankSum=3.547;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:10,19:29:25:535,25,0 1/1:8,21:29:60:690,60,0 1/1:10,21:31:37:661,37,0 1/1:6,18:24:26:521,26,0 +chr11 44096016 . G C 243.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.079;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6598;MLEAC=2;MLEAF=0.250;MQ=29.09;MQ0=0;MQRankSum=-3.102;QD=7.61;ReadPosRankSum=2.932;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,7:14:99:156,0,128 0/0:12,1:13:27:0,27,326 0/0:17,1:18:24:0,24,288 0/1:11,7:18:99:129,0,202 +chr11 44135994 rs11606743 C T 239.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.094;DB;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.1002;MLEAC=3;MLEAF=0.375;MQ=32.85;MQ0=0;MQRankSum=-1.738;QD=8.27;ReadPosRankSum=-0.933;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:99:112,0,289 0/0:10,0:10:27:0,27,333 0/1:5,2:7:22:22,0,139 0/1:3,5:8:60:149,0,60 +chr11 44561629 . A T 268.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.259;DP=35;Dels=0.00;FS=3.074;HaplotypeScore=1.4640;MLEAC=4;MLEAF=0.500;MQ=28.38;MQ0=0;MQRankSum=2.079;QD=9.27;ReadPosRankSum=1.552;SB=0.440 GT:AD:DP:GQ:PL 1/1:5,2:7:6:62,6,0 0/1:6,4:10:33:119,0,33 0/0:6,0:6:3:0,3,31 0/1:8,4:12:99:131,0,99 +chr11 45949953 . T C 622.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.675;DP=159;Dels=0.00;FS=2.596;HaplotypeScore=1.4655;MLEAC=4;MLEAF=0.500;MQ=28.69;MQ0=0;MQRankSum=-4.735;QD=3.92;ReadPosRankSum=1.765;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,12:42:99:196,0,409 0/1:27,11:38:99:200,0,376 0/1:27,9:36:99:147,0,444 0/1:36,7:43:99:122,0,421 +chr11 46299798 . C G 50.99 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.879;DP=35;Dels=0.00;FS=38.226;HaplotypeScore=1.5904;MLEAC=4;MLEAF=0.500;MQ=25.74;MQ0=0;MQRankSum=-2.457;QD=1.46;ReadPosRankSum=0.805;SB=-1.588e+00 GT:AD:DP:GQ:PL 0/1:6,2:8:11:11,0,103 0/1:7,4:11:15:15,0,139 0/1:8,2:10:24:24,0,225 0/1:3,3:6:43:43,0,53 +chr11 46406961 . T C 30.57 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.756;DP=180;Dels=0.02;FS=121.309;HaplotypeScore=7.5050;MLEAC=3;MLEAF=0.375;MQ=27.47;MQ0=0;MQRankSum=0.246;QD=0.22;ReadPosRankSum=0.575;SB=0.645 GT:AD:DP:GQ:PL 0/0:35,2:37:27:0,27,823 0/1:48,5:53:9:9,0,980 0/1:35,4:39:28:28,0,724 0/1:41,7:48:36:36,0,744 +chr11 46534462 . T A 154.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.006;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.4972;MLEAC=4;MLEAF=0.500;MQ=32.11;MQ0=0;MQRankSum=-2.682;QD=3.29;ReadPosRankSum=3.395;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,3:17:62:62,0,215 0/1:8,2:10:46:46,0,85 0/1:11,3:14:68:68,0,144 0/1:5,1:6:21:21,0,119 +chr11 46685693 . T A 134.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.785;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.6564;MLEAC=3;MLEAF=0.375;MQ=28.44;MQ0=0;MQRankSum=-3.607;QD=0.98;ReadPosRankSum=-0.890;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:41,2:43:26:0,26,806 0/1:41,7:48:63:63,0,812 0/1:40,7:47:56:56,0,731 0/1:35,7:42:59:59,0,630 +chr11 46686558 . T G 460.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.624;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=5.9550;MLEAC=4;MLEAF=0.500;MQ=29.78;MQ0=0;MQRankSum=2.100;QD=3.31;ReadPosRankSum=1.519;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,6:38:99:163,0,236 0/1:29,3:32:68:68,0,284 0/1:33,3:36:63:63,0,215 0/1:25,7:32:99:209,0,160 +chr11 46724769 . G C 104.90 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.346;DP=38;Dels=0.00;FS=8.356;HaplotypeScore=1.7359;MLEAC=4;MLEAF=0.500;MQ=28.07;MQ0=0;MQRankSum=1.866;QD=2.76;ReadPosRankSum=1.063;SB=-1.039e+00 GT:AD:DP:GQ:PL 0/1:7,1:8:11:11,0,102 0/1:10,1:11:11:11,0,99 0/1:10,1:11:7:7,0,131 0/1:4,4:8:22:117,0,22 +chr11 46726072 . A C 141.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.723;DP=129;Dels=0.01;FS=86.319;HaplotypeScore=6.7081;MLEAC=3;MLEAF=0.375;MQ=35.85;MQ0=0;MQRankSum=-3.749;QD=1.54;ReadPosRankSum=0.192;SB=1.54 GT:AD:DP:GQ:PL 0/1:21,3:24:59:59,0,495 0/1:31,4:35:42:42,0,762 0/0:34,3:37:19:0,19,904 0/1:26,6:32:84:84,0,710 +chr11 46727025 . C T 66.72 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.776;DP=56;Dels=0.02;FS=11.274;HaplotypeScore=4.8774;MLEAC=2;MLEAF=0.250;MQ=30.17;MQ0=0;MQRankSum=1.002;QD=1.96;ReadPosRankSum=-0.485;SB=1.49 GT:AD:DP:GQ:PL 0/1:17,2:19:27:27,0,378 0/0:10,0:10:18:0,18,208 0/1:12,3:15:81:81,0,234 0/0:11,0:11:15:0,15,198 +chr11 46890355 . C T 30.98 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.990;DP=30;Dels=0.00;FS=4.197;HaplotypeScore=0.6636;MLEAC=2;MLEAF=0.250;MQ=28.40;MQ0=0;MQRankSum=-0.995;QD=1.55;ReadPosRankSum=1.777;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,49 0/1:9,2:11:36:36,0,138 0/1:7,2:9:35:35,0,163 0/0:5,1:6:6:0,6,73 +chr11 46900807 . G T 81.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.022;DP=140;Dels=0.00;FS=40.950;HaplotypeScore=8.1810;MLEAC=3;MLEAF=0.375;MQ=31.45;MQ0=0;MQRankSum=-3.540;QD=0.82;ReadPosRankSum=2.589;SB=-5.401e-03 GT:AD:DP:GQ:PL 0/1:33,5:38:49:49,0,760 0/1:23,3:26:30:30,0,478 0/0:38,2:40:77:0,77,1100 0/1:29,7:36:46:46,0,722 +chr11 46916693 rs3751097 C T 411.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.048;DB;DP=139;Dels=0.00;FS=17.109;HaplotypeScore=3.0356;MLEAC=1;MLEAF=0.125;MQ=35.01;MQ0=0;MQRankSum=-1.112;QD=12.48;ReadPosRankSum=0.725;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/0:34,0:34:96:0,96,1232 0/1:15,17:33:99:448,0,258 0/0:36,0:37:93:0,93,1172 0/0:35,0:35:96:0,96,1218 +chr11 47187762 . G C 170.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.705;DP=146;Dels=0.01;FS=9.208;HaplotypeScore=12.8000;MLEAC=4;MLEAF=0.500;MQ=29.30;MQ0=0;MQRankSum=-3.674;QD=1.17;ReadPosRankSum=0.633;SB=-2.288e-02 GT:AD:DP:GQ:PL 0/1:26,4:30:54:54,0,432 0/1:34,6:40:95:95,0,445 0/1:40,4:44:39:39,0,581 0/1:28,3:31:25:25,0,527 +chr11 47187894 . G T 64.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.900;DP=180;Dels=0.01;FS=118.287;HaplotypeScore=24.6838;MLEAC=2;MLEAF=0.250;MQ=28.35;MQ0=0;MQRankSum=-0.080;QD=0.83;ReadPosRankSum=0.337;SB=-3.374e+00 GT:AD:DP:GQ:PL 0/1:31,5:40:35:35,0,765 0/0:42,2:45:25:0,25,901 0/0:51,1:55:69:0,69,1034 0/1:28,6:38:71:71,0,496 +chr11 47295447 . A G 97.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.211;DP=87;Dels=0.00;FS=2.342;HaplotypeScore=4.7217;MLEAC=3;MLEAF=0.375;MQ=31.88;MQ0=0;MQRankSum=-2.575;QD=1.38;ReadPosRankSum=0.307;SB=0.133 GT:AD:DP:GQ:PL 0/1:18,4:22:65:65,0,495 0/1:22,4:26:51:51,0,595 0/1:20,3:23:25:25,0,533 0/0:14,2:16:15:0,15,390 +chr11 47306338 . T A 39.98 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.247;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=0.4989;MLEAC=2;MLEAF=0.250;MQ=35.54;MQ0=0;MQRankSum=1.078;QD=1.38;ReadPosRankSum=0.327;SB=0.018 GT:AD:DP:GQ:PL 0/1:16,2:18:25:25,0,452 0/0:17,1:18:9:0,9,363 0/0:22,1:23:20:0,20,677 0/1:8,2:10:56:56,0,81 +chr11 47345853 . A C 84.09 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.534;DP=68;Dels=0.03;FS=28.061;HaplotypeScore=2.7210;MLEAC=3;MLEAF=0.375;MQ=35.56;MQ0=0;MQRankSum=-2.517;QD=1.79;ReadPosRankSum=0.035;SB=-1.052e+00 GT:AD:DP:GQ:PL 0/1:11,3:14:64:64,0,272 0/1:16,3:19:57:57,0,409 0/0:19,1:20:12:0,12,471 0/1:12,1:13:4:4,0,277 +chr11 47371484 rs11570050 AG A 186.30 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.154;DB;DP=25;FS=2.246;HaplotypeScore=11.4944;MLEAC=5;MLEAF=0.625;MQ=18.95;MQ0=0;MQRankSum=-0.545;QD=7.45;RPA=4,3;RU=G;ReadPosRankSum=0.068;SB=-3.775e+01;STR GT:AD:DP:GQ:PL 0/1:3,2:3:30:69,0,30 1/1:2,4:2:6:79,6,0 0/1:6,2:6:61:61,0,140 0/1:5,1:4:30:30,0,70 +chr11 47436347 . T C 42.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.135;DP=141;Dels=0.00;FS=49.469;HaplotypeScore=2.9371;MLEAC=1;MLEAF=0.125;MQ=34.55;MQ0=0;MQRankSum=-3.071;QD=1.28;ReadPosRankSum=2.202;SB=-7.301e+00 GT:AD:DP:GQ:PL 0/0:31,3:34:20:0,20,863 0/1:27,6:33:78:78,0,728 0/0:38,0:38:99:0,102,1244 0/0:34,2:36:12:0,12,952 +chr11 47605799 . A C 312.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.336;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9667;MLEAC=4;MLEAF=0.500;MQ=36.59;MQ0=0;MQRankSum=-3.197;QD=2.79;ReadPosRankSum=3.474;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,5:32:99:110,0,573 0/1:21,4:25:74:74,0,371 0/1:23,4:27:57:57,0,492 0/1:23,5:28:99:114,0,338 +chr11 47647232 . T G 70.46 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.704;DP=260;Dels=0.00;FS=76.308;HaplotypeScore=14.4894;MLEAC=1;MLEAF=0.125;MQ=29.18;MQ0=0;MQRankSum=-1.800;QD=0.45;ReadPosRankSum=2.358;SB=-6.207e+00 GT:AD:DP:GQ:PL 0/0:70,5:76:38:0,38,1493 0/1:74,7:81:1:1,0,1330 0/1:64,9:75:99:105,0,1204 0/0:26,2:28:11:0,11,346 +chr11 47741428 . AGG A 417.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.271;DP=62;FS=0.000;HaplotypeScore=36.1098;MLEAC=4;MLEAF=0.500;MQ=25.18;MQ0=0;MQRankSum=0.751;QD=6.73;ReadPosRankSum=-2.310;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:8,6:12:99:288,0,174 0/1:12,5:10:78:78,0,265 0/1:18,2:17:59:59,0,376 0/1:7,1:4:44:44,0,48 +chr11 48184979 rs75225930 TCTGG T 998.22 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.940;DB;DP=37;FS=0.000;HaplotypeScore=40.7232;MLEAC=5;MLEAF=0.625;MQ=23.89;MQ0=0;MQRankSum=0.157;QD=26.98;ReadPosRankSum=0.548;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:8,3:7:31:183,0,31 1/1:4,5:7:21:469,21,0 0/1:6,2:5:0:182,0,0 0/1:4,4:6:72:216,0,72 +chr11 48249574 . G T 259.10 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.565;DP=40;Dels=0.05;FS=15.214;HaplotypeScore=12.1628;MLEAC=5;MLEAF=0.625;MQ=18.41;MQ0=0;MQRankSum=2.653;QD=6.48;ReadPosRankSum=1.995;SB=16.92 GT:AD:DP:GQ:PL 1/1:6,3:10:6:50,6,0 0/1:9,4:13:62:62,0,84 0/1:5,6:11:11:99,0,11 1/1:1,3:4:9:92,9,0 +chr11 48285970 . C G 54.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.497;DP=62;Dels=0.02;FS=44.207;HaplotypeScore=3.2080;MLEAC=4;MLEAF=0.500;MQ=29.46;MQ0=0;MQRankSum=-2.518;QD=0.87;ReadPosRankSum=0.940;SB=-1.505e+00 GT:AD:DP:GQ:PL 0/1:14,3:17:48:48,0,290 0/1:10,2:12:4:4,0,236 0/1:16,3:19:12:12,0,472 0/1:10,3:13:31:31,0,181 +chr11 48286234 rs61732322 A G 761.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.367;DB;DP=91;Dels=0.02;FS=3.960;HaplotypeScore=3.0693;MLEAC=3;MLEAF=0.375;MQ=33.32;MQ0=0;MQRankSum=-2.776;QD=11.72;ReadPosRankSum=-0.813;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/0:26,0:26:69:0,69,875 0/1:12,7:19:99:198,0,299 0/1:13,10:23:99:288,0,432 0/1:10,11:21:99:319,0,243 +chr11 48346999 rs72473367 T G 194.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.577;DB;DP=236;Dels=0.00;FS=12.892;HaplotypeScore=4.8717;MLEAC=3;MLEAF=0.375;MQ=36.55;MQ0=0;MQRankSum=-1.560;QD=1.07;ReadPosRankSum=-1.297;SB=-1.357e+02 GT:AD:DP:GQ:PL 0/1:52,10:62:99:201,0,1660 0/1:64,5:69:13:13,0,1915 0/1:46,4:50:22:22,0,1382 0/0:51,4:55:6:0,6,1477 +chr11 48373900 rs77877396 A G 454.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.124;DB;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.4804;MLEAC=4;MLEAF=0.500;MQ=34.68;MQ0=0;MQRankSum=-6.988;QD=2.54;ReadPosRankSum=-0.683;SB=-2.132e+02 GT:AD:DP:GQ:PL 0/1:36,11:47:99:156,0,1254 0/1:41,8:49:34:34,0,1320 0/1:52,9:61:99:114,0,1552 0/1:12,10:22:99:193,0,392 +chr11 49071434 . A G 41.84 . AC=2;AF=0.333;AN=6;BaseQRankSum=-2.929;DP=110;Dels=0.00;FS=40.988;HaplotypeScore=7.6410;MLEAC=2;MLEAF=0.333;MQ=10.89;MQ0=0;MQRankSum=3.552;QD=0.69;ReadPosRankSum=-2.626;SB=-2.158e+00 GT:AD:DP:GQ:PL 0/1:27,2:29:17:53,0,17 0/1:29,3:32:19:27,0,19 ./. 0/0:26,1:28:9:0,9,114 +chr11 49090590 . T G 336.43 . AC=5;AF=0.833;AN=6;BaseQRankSum=-2.902;DP=122;Dels=0.00;FS=122.231;HaplotypeScore=0.6566;MLEAC=5;MLEAF=0.833;MQ=11.60;MQ0=0;MQRankSum=1.656;QD=3.96;ReadPosRankSum=2.988;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,12:30:9:127,0,9 ./. 1/1:18,14:32:6:69,6,0 1/1:8,15:23:15:180,15,0 +chr11 49142102 rs7932465 T A 57.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.173;DB;DP=119;Dels=0.00;FS=1.765;HaplotypeScore=0.7268;MLEAC=2;MLEAF=0.250;MQ=15.50;MQ0=0;MQRankSum=-7.011;QD=1.07;ReadPosRankSum=3.547;SB=-3.868e+01 GT:AD:DP:GQ:PL 1/1:15,10:25:3:38,3,0 0/1:17,12:29:49:63,0,49 0/0:29,13:42:15:0,15,170 0/0:16,7:23:24:0,24,236 +chr11 49208169 . G A 33.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.520;DP=123;Dels=0.05;FS=5.017;HaplotypeScore=3.1017;MLEAC=2;MLEAF=0.250;MQ=11.96;MQ0=0;MQRankSum=-3.071;QD=0.43;ReadPosRankSum=2.019;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,4:30:9:0,9,106 0/1:34,9:43:32:36,0,32 0/1:28,6:34:22:38,0,22 0/0:8,2:10:6:0,6,64 +chr11 49846334 rs142212310 AAGCC A 556.81 . AC=8;AF=1.00;AN=8;DB;DP=30;FS=0.000;HaplotypeScore=4.2566;MLEAC=8;MLEAF=1.00;MQ=16.90;MQ0=0;QD=18.56;RPA=4,3;RU=AGCC;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:1,9:3:9:173,9,0 1/1:2,7:3:9:192,9,0 1/1:2,4:4:6:128,6,0 1/1:2,3:3:8:111,8,0 +chr11 49854624 . A C 193.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.654;DP=189;Dels=0.00;FS=2.951;HaplotypeScore=8.9550;MLEAC=4;MLEAF=0.500;MQ=19.19;MQ0=0;MQRankSum=-1.398;QD=1.03;ReadPosRankSum=6.678;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:53,8:63:13:13,0,231 0/1:35,12:48:60:60,0,158 0/1:41,17:59:99:147,0,234 0/1:15,4:19:16:16,0,36 +chr11 50003532 . G T 291.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.441;DP=311;Dels=0.00;FS=68.621;HaplotypeScore=7.3437;MLEAC=4;MLEAF=0.500;MQ=14.60;MQ0=0;MQRankSum=4.218;QD=0.94;ReadPosRankSum=-2.003;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:73,8:81:99:99,0,126 0/1:67,11:78:99:110,0,130 0/1:88,5:93:52:52,0,274 0/1:53,6:59:73:73,0,91 +chr11 50252641 . A C 35 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.719;DP=257;Dels=0.00;FS=0.000;HaplotypeScore=1.2471;MLEAC=3;MLEAF=0.375;MQ=11.45;MQ0=0;MQRankSum=0.476;QD=0.18;ReadPosRankSum=-1.049;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:62,0:62:15:0,15,174 0/1:77,1:78:27:27,0,38 0/1:83,3:86:25:25,0,45 0/1:29,2:31:26:26,0,27 +chr11 51435852 rs539871 G T 872.10 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.721;DB;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=3.7340;MLEAC=8;MLEAF=1.00;MQ=22.02;MQ0=0;MQRankSum=3.352;QD=13.02;ReadPosRankSum=0.749;SB=-4.013e+02 GT:AD:DP:GQ:PL 1/1:2,18:20:27:277,27,0 1/1:1,20:21:33:340,33,0 1/1:2,10:12:12:124,12,0 1/1:4,8:13:15:170,15,0 +chr11 51516000 rs11246607 C T 162.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.081;DB;DP=158;Dels=0.01;FS=2.283;HaplotypeScore=1.4498;MLEAC=5;MLEAF=0.625;MQ=8.70;MQ0=0;MQRankSum=0.850;QD=1.47;ReadPosRankSum=0.473;SB=-3.276e+01 GT:AD:DP:GQ:PL 0/0:47,0:47:3:0,3,33 1/1:23,14:37:9:76,9,0 0/1:20,23:43:51:81,0,51 0/1:22,8:30:18:50,0,18 +chr11 55212799 rs2845646 A T 104.25 . AC=2;AF=0.500;AN=4;BaseQRankSum=-0.365;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.500;MQ=29.93;MQ0=0;MQRankSum=0.000;QD=10.43;ReadPosRankSum=-0.365;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:2,5:7:31:110,0,31 0/1:2,1:3:29:29,0,36 ./. +chr11 55482421 . G T 47.89 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.508;DP=155;Dels=0.00;FS=9.857;HaplotypeScore=5.8421;MLEAC=1;MLEAF=0.125;MQ=21.52;MQ0=0;MQRankSum=1.985;QD=1.11;ReadPosRankSum=1.359;SB=-5.130e+00 GT:AD:DP:GQ:PL 0/1:39,4:43:83:83,0,216 0/0:37,0:38:48:0,48,484 0/0:36,3:39:21:0,21,451 0/0:34,1:35:1:0,1,232 +chr11 55656814 . C T 271.50 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.142;DP=62;Dels=0.00;FS=24.153;HaplotypeScore=5.9991;MLEAC=7;MLEAF=0.875;MQ=14.76;MQ0=0;MQRankSum=3.009;QD=4.38;ReadPosRankSum=3.388;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,6:14:10:92,0,10 1/1:14,9:23:12:120,12,0 1/1:12,6:18:9:79,9,0 1/1:3,4:7:3:22,3,0 +chr11 55782600 rs67563695 T G 247.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.435;DB;DP=90;Dels=0.00;FS=1.348;HaplotypeScore=2.1245;MLEAC=2;MLEAF=0.250;MQ=17.21;MQ0=0;MQRankSum=3.430;QD=11.77;ReadPosRankSum=-0.443;SB=-1.056e+02 GT:AD:DP:GQ:PL 1/1:11,10:21:24:293,24,0 0/0:33,0:33:15:0,15,141 0/0:24,0:24:3:0,3,35 0/0:12,0:12:18:0,18,181 +chr11 55783109 . T C 65.29 . AC=3;AF=0.500;AN=6;BaseQRankSum=-3.421;DP=140;Dels=0.01;FS=93.994;HaplotypeScore=1.1192;MLEAC=3;MLEAF=0.500;MQ=10.93;MQ0=0;MQRankSum=-1.034;QD=0.65;ReadPosRankSum=1.781;SB=5.276e-03 GT:AD:DP:GQ:PL 0/1:22,8:30:37:37,0,45 ./. 0/1:35,7:42:45:45,0,60 0/1:22,5:27:22:22,0,29 +chr11 55798830 rs140631143 T A 79.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.743;DB;DP=157;Dels=0.00;FS=17.174;HaplotypeScore=2.9122;MLEAC=2;MLEAF=0.250;MQ=35.55;MQ0=0;MQRankSum=-3.482;QD=1.10;ReadPosRankSum=3.544;SB=-1.106e-02 GT:AD:DP:GQ:PL 0/0:41,2:43:60:0,60,1292 0/1:45,6:51:71:71,0,1305 0/0:41,1:42:60:0,60,1109 0/1:17,4:21:50:50,0,379 +chr11 55889913 . A T 45.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.923;DP=171;Dels=0.00;FS=38.976;HaplotypeScore=3.2731;MLEAC=3;MLEAF=0.375;MQ=15.17;MQ0=0;MQRankSum=2.085;QD=0.34;ReadPosRankSum=0.387;SB=-1.300e+00 GT:AD:DP:GQ:PL 0/1:34,2:36:42:42,0,78 0/1:45,1:48:21:21,0,40 0/1:44,3:48:25:25,0,70 0/0:39,0:39:15:0,15,164 +chr11 55944080 . A C 60.39 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.219;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5513;MLEAC=3;MLEAF=0.375;MQ=28.23;MQ0=0;MQRankSum=-0.762;QD=0.85;ReadPosRankSum=-0.245;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,2:20:26:26,0,222 0/1:25,5:30:71:71,0,294 0/1:20,1:21:2:2,0,170 0/0:7,1:8:3:0,3,23 +chr11 55999819 . T A 62.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.005;DP=171;Dels=0.00;FS=25.832;HaplotypeScore=8.8496;MLEAC=2;MLEAF=0.250;MQ=17.16;MQ0=0;MQRankSum=1.642;QD=0.94;ReadPosRankSum=-0.052;SB=0.064 GT:AD:DP:GQ:PL 0/1:45,1:46:21:21,0,174 0/0:57,0:57:42:0,42,432 0/0:45,1:47:33:0,33,359 0/1:17,4:21:63:83,0,63 +chr11 56020550 . C G 915.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.648;DP=158;Dels=0.00;FS=152.953;HaplotypeScore=4.0713;MLEAC=4;MLEAF=0.500;MQ=27.01;MQ0=0;MQRankSum=1.597;QD=5.79;ReadPosRankSum=3.146;SB=-9.560e-01 GT:AD:DP:GQ:PL 0/1:34,15:49:99:327,0,565 0/1:36,11:47:99:202,0,626 0/1:34,17:51:99:423,0,602 0/1:10,1:11:5:5,0,178 +chr11 56128575 rs140351903 A T 80.03 . AC=2;AF=0.250;AN=8;BaseQRankSum=3.205;DB;DP=173;Dels=0.00;FS=12.552;HaplotypeScore=1.5574;MLEAC=2;MLEAF=0.250;MQ=13.86;MQ0=0;MQRankSum=-1.773;QD=0.82;ReadPosRankSum=2.505;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:26,17:43:5:5,0,150 0/0:56,0:56:54:0,54,499 0/1:34,21:55:75:113,0,75 0/0:12,7:19:9:0,9,87 +chr11 56757021 rs61886711 G A 203.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.054;DB;DP=294;Dels=0.00;FS=2.015;HaplotypeScore=0.7206;MLEAC=1;MLEAF=0.125;MQ=20.57;MQ0=0;MQRankSum=0.907;QD=2.51;ReadPosRankSum=1.695;SB=-6.987e+01 GT:AD:DP:GQ:PL 0/0:93,0:93:78:0,78,901 0/1:60,21:81:99:239,0,415 0/0:83,0:83:45:0,45,555 0/0:37,0:37:18:0,18,226 +chr11 56954936 . T A 151.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.876;DP=90;Dels=0.03;FS=3.509;HaplotypeScore=4.1102;MLEAC=3;MLEAF=0.375;MQ=30.28;MQ0=0;MQRankSum=-2.889;QD=2.14;ReadPosRankSum=0.088;SB=1.36 GT:AD:DP:GQ:PL 0/1:14,5:19:71:71,0,408 0/0:16,1:17:3:0,3,266 0/1:26,3:29:27:27,0,670 0/1:17,5:22:95:95,0,322 +chr11 57068055 . T A 73.07 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.039;DP=91;Dels=0.00;FS=101.946;HaplotypeScore=2.0475;MLEAC=2;MLEAF=0.250;MQ=34.75;MQ0=0;MQRankSum=-2.985;QD=1.52;ReadPosRankSum=2.544;SB=-3.116e+00 GT:AD:DP:GQ:PL 0/1:23,5:28:85:85,0,746 0/0:20,1:22:13:0,13,511 0/1:17,3:20:29:29,0,412 0/0:18,3:21:9:0,9,522 +chr11 57081475 rs4939135 C A 104.76 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.380;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=19.26;MQ0=0;MQRankSum=1.380;QD=13.10;ReadPosRankSum=1.380;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:3:3:27,3,0 ./. 1/1:2,3:5:9:112,9,0 +chr11 57097701 . T C 72.16 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.347;DP=98;Dels=0.00;FS=20.214;HaplotypeScore=3.3924;MLEAC=1;MLEAF=0.125;MQ=26.75;MQ0=0;MQRankSum=-1.108;QD=2.67;ReadPosRankSum=1.406;SB=-2.050e+01 GT:AD:DP:GQ:PL 0/1:22,5:27:99:108,0,268 0/0:19,2:21:36:0,36,376 0/0:25,1:27:14:0,14,377 0/0:22,1:23:10:0,10,283 +chr11 57235487 . T G 37.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.692;DP=85;Dels=0.00;FS=53.791;HaplotypeScore=7.2020;MLEAC=3;MLEAF=0.375;MQ=28.56;MQ0=0;MQRankSum=-2.807;QD=0.67;ReadPosRankSum=0.539;SB=-1.723e+00 GT:AD:DP:GQ:PL 0/1:14,2:16:3:3,0,276 0/1:18,4:22:50:50,0,433 0/0:26,3:29:18:0,18,618 0/1:15,3:18:25:25,0,205 +chr11 57236189 . G A 64.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.502;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.4988;MLEAC=1;MLEAF=0.125;MQ=32.14;MQ0=0;MQRankSum=0.039;QD=3.82;ReadPosRankSum=-0.218;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,0:21:57:0,57,699 0/0:14,0:14:33:0,33,381 0/0:24,0:24:48:0,48,554 0/1:13,4:17:99:101,0,290 +chr11 57309129 . G T 37.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.306;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.6896;MLEAC=3;MLEAF=0.375;MQ=27.76;MQ0=0;MQRankSum=-2.384;QD=1.07;ReadPosRankSum=1.234;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:53:53,0,105 0/0:17,2:19:3:0,3,274 0/0:15,1:16:0:0,0,254 0/1:17,6:24:22:22,0,286 +chr11 57367324 . A G 129.37 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.298;DP=159;Dels=0.00;FS=9.320;HaplotypeScore=4.8797;MLEAC=4;MLEAF=0.500;MQ=30.82;MQ0=0;MQRankSum=-1.919;QD=0.81;ReadPosRankSum=1.522;SB=-1.347e+00 GT:AD:DP:GQ:PL 0/1:39,7:46:99:101,0,464 0/1:39,5:45:54:54,0,649 0/1:39,4:43:3:3,0,488 0/1:24,1:25:12:12,0,151 +chr11 57374081 . C G 289.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.033;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.3673;MLEAC=4;MLEAF=0.500;MQ=31.12;MQ0=0;MQRankSum=-3.861;QD=2.28;ReadPosRankSum=0.310;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,7:32:72:72,0,632 0/1:37,5:43:49:49,0,747 0/1:28,9:37:99:186,0,571 0/1:11,4:15:25:25,0,231 +chr11 57460224 rs12801694 C T 501.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.673;DB;DP=75;Dels=0.04;FS=0.000;HaplotypeScore=1.4724;MLEAC=4;MLEAF=0.500;MQ=34.71;MQ0=0;MQRankSum=-4.699;QD=9.29;ReadPosRankSum=0.491;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,0:21:63:0,63,808 1/1:2,10:12:27:315,27,0 0/1:13,4:18:90:90,0,432 0/1:14,7:21:99:145,0,508 +chr11 57876468 . G T 68.75 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.035;DP=179;Dels=0.01;FS=0.000;HaplotypeScore=2.6438;MLEAC=1;MLEAF=0.125;MQ=32.86;MQ0=0;MQRankSum=0.780;QD=1.56;ReadPosRankSum=-0.833;SB=-9.755e-01 GT:AD:DP:GQ:PL 0/0:45,3:48:9:0,9,950 0/0:38,2:40:3:0,3,662 0/0:45,0:46:72:0,72,897 0/1:37,6:44:99:104,0,449 +chr11 57971244 . A G 36.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.047;DP=183;Dels=0.00;FS=10.923;HaplotypeScore=9.7452;MLEAC=1;MLEAF=0.125;MQ=23.43;MQ0=0;MQRankSum=1.196;QD=0.92;ReadPosRankSum=-0.764;SB=-6.927e+00 GT:AD:DP:GQ:PL 0/0:43,0:44:33:0,33,361 0/0:49,0:49:57:0,57,563 0/0:49,0:50:66:0,66,659 0/1:36,3:40:73:73,0,172 +chr11 57971470 . T C 110.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.446;DP=224;Dels=0.00;FS=46.035;HaplotypeScore=8.9203;MLEAC=3;MLEAF=0.375;MQ=17.15;MQ0=0;MQRankSum=2.346;QD=0.62;ReadPosRankSum=-1.174;SB=1.12 GT:AD:DP:GQ:PL 0/1:62,4:66:45:45,0,274 0/1:47,4:51:60:60,0,169 0/1:58,5:63:49:49,0,214 0/0:42,0:44:27:0,27,295 +chr11 57982625 . G A 39.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.226;DP=171;Dels=0.02;FS=93.226;HaplotypeScore=18.7569;MLEAC=2;MLEAF=0.250;MQ=23.15;MQ0=0;MQRankSum=-3.710;QD=0.55;ReadPosRankSum=0.773;SB=-3.835e-01 GT:AD:DP:GQ:PL 0/0:40,4:44:26:0,26,832 0/0:50,5:55:25:0,25,781 0/1:30,11:41:53:53,0,239 0/1:22,5:27:28:28,0,112 +chr11 58010309 rs10750890 A G 114.66 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.834;DB;DP=41;Dels=0.00;FS=8.360;HaplotypeScore=0.1446;MLEAC=5;MLEAF=0.625;MQ=16.83;MQ0=0;MQRankSum=-0.673;QD=2.80;ReadPosRankSum=1.018;SB=-3.865e+01 GT:AD:DP:GQ:PL 0/1:5,4:9:29:29,0,59 0/1:6,9:15:31:65,0,31 0/1:2,7:9:17:25,0,17 1/1:5,3:8:3:38,3,0 +chr11 58059421 rs10896742 A G 407.59 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.849;DB;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.0282;MLEAC=5;MLEAF=0.625;MQ=25.56;MQ0=0;MQRankSum=0.599;QD=11.99;ReadPosRankSum=1.993;SB=-3.806e+01 GT:AD:DP:GQ:PL 0/0:13,1:14:15:0,15,380 0/1:4,9:13:15:235,0,15 1/1:6,4:10:12:119,12,0 1/1:6,5:11:9:103,9,0 +chr11 58085774 rs1938661 A G 38.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DB;DP=7;Dels=0.00;FS=3.979;HaplotypeScore=0.9976;MLEAC=4;MLEAF=1.00;MQ=17.38;MQ0=0;MQRankSum=1.231;QD=5.43;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:2,1:3:3:38,3,0 1/1:1,2:4:3:33,3,0 +chr11 58125656 . T G 125.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.108;DP=184;Dels=0.00;FS=84.255;HaplotypeScore=2.4071;MLEAC=2;MLEAF=0.250;MQ=32.18;MQ0=0;MQRankSum=-0.479;QD=1.82;ReadPosRankSum=1.019;SB=-1.726e+00 GT:AD:DP:GQ:PL 0/1:44,7:51:87:87,0,1095 0/0:63,4:67:43:0,43,1510 0/0:48,0:48:99:0,108,1178 0/1:14,4:18:80:80,0,350 +chr11 58170738 rs11229413 A G 688.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.344;DB;DP=265;Dels=0.00;FS=32.227;HaplotypeScore=0.3670;MLEAC=1;MLEAF=0.125;MQ=34.64;MQ0=0;MQRankSum=-1.774;QD=8.72;ReadPosRankSum=-1.137;SB=-3.540e+02 GT:AD:DP:GQ:PL 0/1:51,28:79:99:725,0,1246 0/0:66,0:66:99:0,177,2159 0/0:90,0:90:99:0,223,2701 0/0:29,0:30:57:0,57,721 +chr11 58190136 rs4298923 A G 362.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.365;DB;DP=118;Dels=0.01;FS=4.315;HaplotypeScore=0.6810;MLEAC=1;MLEAF=0.125;MQ=31.58;MQ0=0;MQRankSum=1.400;QD=11.34;ReadPosRankSum=-0.870;SB=-1.880e+02 GT:AD:DP:GQ:PL 0/0:30,0:30:81:0,81,894 0/1:19,13:32:99:399,0,367 0/0:41,0:41:99:0,105,1154 0/0:14,0:14:33:0,33,386 +chr11 58317703 . T A 130.51 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.209;DP=77;Dels=0.04;FS=0.000;HaplotypeScore=16.8948;MLEAC=5;MLEAF=0.625;MQ=28.09;MQ0=0;MQRankSum=-0.057;QD=1.69;ReadPosRankSum=-0.856;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:67:67,0,184 0/1:19,1:20:12:12,0,148 0/1:18,2:20:31:31,0,180 1/1:10,2:12:6:64,6,0 +chr11 58386268 . T C 115.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.193;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7764;MLEAC=3;MLEAF=0.375;MQ=32.88;MQ0=0;MQRankSum=-3.574;QD=1.22;ReadPosRankSum=3.188;SB=-1.344e-02 GT:AD:DP:GQ:PL 0/1:33,6:39:63:63,0,416 0/0:35,1:36:19:0,19,426 0/1:41,4:45:33:33,0,598 0/1:8,3:11:63:63,0,149 +chr11 58478090 . G A 136.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.544;DP=172;Dels=0.01;FS=46.837;HaplotypeScore=19.1595;MLEAC=2;MLEAF=0.250;MQ=28.69;MQ0=0;MQRankSum=-1.181;QD=1.82;ReadPosRankSum=-0.454;SB=2.17 GT:AD:DP:GQ:PL 0/0:44,1:46:35:0,35,644 0/1:40,6:47:96:96,0,475 0/0:50,1:51:49:0,49,778 0/1:22,4:27:82:82,0,245 +chr11 59159702 . T C 247.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.518;DP=83;Dels=0.01;FS=41.450;HaplotypeScore=15.3063;MLEAC=4;MLEAF=0.500;MQ=19.51;MQ0=0;MQRankSum=0.138;QD=2.98;ReadPosRankSum=1.775;SB=0.593 GT:AD:DP:GQ:PL 0/1:9,6:15:23:23,0,105 0/1:18,5:23:35:78,0,35 0/1:15,9:24:65:173,0,65 0/1:15,5:20:16:16,0,138 +chr11 59224720 rs1453543 A G 6470.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.935;DB;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=0.9829;MLEAC=8;MLEAF=1.00;MQ=36.90;MQ0=0;MQRankSum=-1.066;QD=37.62;ReadPosRankSum=2.816;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1781,110,0 1/1:1,37:38:99:1487,111,0 1/1:3,42:45:94:1603,94,0 1/1:0,41:41:99:1599,123,0 +chr11 59415453 . T G 173.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.149;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=11.4771;MLEAC=3;MLEAF=0.375;MQ=21.64;MQ0=0;MQRankSum=1.443;QD=2.04;ReadPosRankSum=3.320;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,6:27:73:76,0,73 0/1:22,3:25:34:34,0,138 0/1:26,6:33:99:106,0,125 0/0:6,1:7:9:0,9,83 +chr11 59611362 rs35792306 G A 878.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.496;DB;DP=119;Dels=0.01;FS=2.819;HaplotypeScore=1.7365;MLEAC=3;MLEAF=0.375;MQ=36.75;MQ0=0;MQRankSum=-3.294;QD=11.27;ReadPosRankSum=1.285;SB=-4.130e+02 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,111,1476 0/1:14,11:25:99:335,0,430 0/1:18,5:23:99:133,0,619 0/1:15,15:30:99:454,0,443 +chr11 60075733 rs76673655 T G 936.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.323;DB;DP=65;Dels=0.00;FS=3.053;HaplotypeScore=1.8254;MLEAC=3;MLEAF=0.375;MQ=33.01;MQ0=0;MQRankSum=2.699;QD=19.12;ReadPosRankSum=1.701;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,13:21:60:480,0,60 0/0:16,0:16:36:0,36,419 0/1:8,5:13:99:156,0,187 0/1:5,10:15:59:344,0,59 +chr11 60230722 rs10792278 G T 96.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.003;DB;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.4335;MLEAC=1;MLEAF=0.125;MQ=35.99;MQ0=0;MQRankSum=0.024;QD=7.40;ReadPosRankSum=-0.562;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,4:13:99:132,0,185 0/0:15,0:15:42:0,42,563 0/0:8,0:8:24:0,24,301 0/0:4,0:4:9:0,9,106 +chr11 60615329 . G T 56.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.322;DP=111;Dels=0.00;FS=2.303;HaplotypeScore=13.7580;MLEAC=3;MLEAF=0.375;MQ=19.05;MQ0=0;MQRankSum=0.618;QD=0.72;ReadPosRankSum=-1.211;SB=-1.130e-01 GT:AD:DP:GQ:PL 0/1:18,4:22:44:44,0,218 0/0:32,1:33:6:0,6,215 0/1:26,3:29:37:37,0,251 0/1:24,3:27:17:17,0,209 +chr11 60666656 . T C 32.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.845;DP=95;Dels=0.00;FS=2.343;HaplotypeScore=1.8830;MLEAC=2;MLEAF=0.250;MQ=31.04;MQ0=0;MQRankSum=-1.602;QD=0.84;ReadPosRankSum=0.084;SB=0.011 GT:AD:DP:GQ:PL 0/0:24,1:25:23:0,23,491 0/1:22,3:25:33:33,0,358 0/0:30,1:31:34:0,34,720 0/1:11,2:14:41:41,0,238 +chr11 60694760 . AG A 111.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.154;DP=81;FS=26.819;HaplotypeScore=47.5378;MLEAC=3;MLEAF=0.375;MQ=21.24;MQ0=0;MQRankSum=1.419;QD=1.72;ReadPosRankSum=-1.043;SB=0.903 GT:AD:DP:GQ:PL 0/0:14,1:9:19:0,19,200 0/1:18,4:11:74:74,0,175 0/1:21,3:14:38:38,0,316 0/1:13,3:9:52:52,0,126 +chr11 60701137 . C G 47.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.370;DP=15;Dels=0.00;FS=3.090;HaplotypeScore=0.7885;MLEAC=4;MLEAF=0.500;MQ=22.28;MQ0=0;MQRankSum=0.740;QD=5.96;ReadPosRankSum=0.740;SB=9.55 GT:AD:DP:GQ:PL 1/1:2,1:3:3:38,3,0 0/0:3,0:3:6:0,6,70 0/0:4,0:4:3:0,3,40 1/1:3,2:5:6:53,6,0 +chr11 60794403 rs3019537 C G 32.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.000;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=4;MLEAF=1.00;MQ=14.60;MQ0=0;MQRankSum=1.026;QD=5.34;ReadPosRankSum=-1.026;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:2,1:3:3:28,3,0 ./. ./. 1/1:2,1:3:3:37,3,0 +chr11 61017527 . G C 36.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.130;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=2.7791;MLEAC=3;MLEAF=0.375;MQ=15.53;MQ0=0;MQRankSum=2.054;QD=1.34;ReadPosRankSum=0.513;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:6:0,6,80 1/1:11,1:12:3:30,3,0 0/0:10,0:10:3:0,3,27 0/1:12,2:14:24:47,0,24 +chr11 61089882 . G A 267.95 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.759;DP=115;Dels=0.00;FS=19.994;HaplotypeScore=2.6237;MLEAC=4;MLEAF=0.500;MQ=34.56;MQ0=0;MQRankSum=-3.627;QD=2.33;ReadPosRankSum=0.193;SB=-3.672e-01 GT:AD:DP:GQ:PL 0/1:26,5:31:99:101,0,575 0/1:25,2:27:10:10,0,557 0/1:27,3:30:23:23,0,620 0/1:20,7:27:99:176,0,340 +chr11 61117882 . C G 170.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.717;DP=50;Dels=0.02;FS=53.478;HaplotypeScore=2.4483;MLEAC=3;MLEAF=0.375;MQ=29.51;MQ0=0;MQRankSum=0.307;QD=4.50;ReadPosRankSum=0.000;SB=6.05 GT:AD:DP:GQ:PL 0/0:12,0:12:15:0,15,163 0/1:8,4:12:99:104,0,171 0/1:10,3:13:77:77,0,179 0/1:10,2:12:33:33,0,232 +chr11 61295619 . A G 182.92 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.442;DP=66;Dels=0.05;FS=36.885;HaplotypeScore=17.0468;MLEAC=3;MLEAF=0.375;MQ=25.40;MQ0=0;MQRankSum=-0.488;QD=3.39;ReadPosRankSum=-0.669;SB=17.87 GT:AD:DP:GQ:PL 1/1:8,3:12:6:60,6,0 0/1:12,1:13:9:9,0,115 0/1:17,8:26:99:159,0,175 0/0:10,2:12:21:0,21,242 +chr11 61404801 . A T 68.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.540;DP=96;Dels=0.01;FS=17.232;HaplotypeScore=2.7291;MLEAC=4;MLEAF=0.500;MQ=15.70;MQ0=0;MQRankSum=2.383;QD=0.72;ReadPosRankSum=-1.024;SB=-1.182e+00 GT:AD:DP:GQ:PL 0/1:20,1:21:21:21,0,76 0/1:20,2:22:19:19,0,39 0/1:31,2:34:31:31,0,130 0/1:15,3:18:40:40,0,64 +chr11 61487757 . T C 369.74 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.462;DP=46;Dels=0.00;FS=14.004;HaplotypeScore=3.2798;MLEAC=7;MLEAF=0.875;MQ=18.04;MQ0=0;MQRankSum=2.444;QD=8.04;ReadPosRankSum=0.374;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:6,3:9:9:73,9,0 0/1:4,9:13:9:124,0,9 1/1:4,7:11:12:95,12,0 1/1:6,7:13:12:120,12,0 +chr11 61546433 . C A 44.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.449;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=5.3488;MLEAC=2;MLEAF=0.250;MQ=26.43;MQ0=0;MQRankSum=-0.845;QD=1.42;ReadPosRankSum=0.234;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,1:15:18:0,18,192 0/1:17,1:18:15:15,0,199 0/0:15,0:16:15:0,15,201 0/1:7,4:11:70:70,0,71 +chr11 61596022 . C A 41.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.867;DP=52;Dels=0.00;FS=16.289;HaplotypeScore=5.3690;MLEAC=2;MLEAF=0.250;MQ=30.72;MQ0=0;MQRankSum=-0.154;QD=1.49;ReadPosRankSum=-0.549;SB=-3.267e+00 GT:AD:DP:GQ:PL 0/1:12,1:13:5:5,0,173 0/0:13,0:13:30:0,30,315 0/0:11,0:11:27:0,27,330 0/1:12,3:15:75:75,0,178 +chr11 61624885 rs526126 G C 2230.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.335;DB;DP=87;Dels=0.00;FS=23.027;HaplotypeScore=4.8398;MLEAC=8;MLEAF=1.00;MQ=28.72;MQ0=0;MQRankSum=3.183;QD=25.64;ReadPosRankSum=2.214;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:4,20:24:32:670,32,0 1/1:4,20:26:51:553,51,0 1/1:3,17:20:48:561,48,0 1/1:3,14:17:42:486,42,0 +chr11 61665655 . G A 303.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.330;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=5.6592;MLEAC=4;MLEAF=0.500;MQ=28.55;MQ0=0;MQRankSum=-2.228;QD=3.34;ReadPosRankSum=4.098;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,6:22:91:91,0,294 0/1:14,5:19:93:93,0,178 0/1:21,6:27:99:115,0,359 0/1:19,3:22:47:47,0,221 +chr11 61675461 . G C 37.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.701;DP=68;Dels=0.03;FS=7.751;HaplotypeScore=14.7215;MLEAC=4;MLEAF=0.500;MQ=24.18;MQ0=0;MQRankSum=-0.420;QD=0.55;ReadPosRankSum=1.181;SB=-1.405e-01 GT:AD:DP:GQ:PL 0/1:14,2:16:33:33,0,98 0/1:17,2:19:28:28,0,174 0/1:15,1:16:6:6,0,142 0/1:14,1:15:12:12,0,117 +chr11 61680870 rs540613 T C 45.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=29.04;MQ0=0;MQRankSum=0.736;QD=15.00;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3:39,3,0 1/1:1,1:2:3:39,3,0 +chr11 61724502 . G A 143.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.427;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.0450;MLEAC=4;MLEAF=0.500;MQ=25.53;MQ0=0;MQRankSum=-2.011;QD=1.56;ReadPosRankSum=-1.652;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,5:23:50:50,0,307 0/1:17,6:23:99:112,0,281 0/1:20,4:24:21:21,0,259 0/1:21,1:22:1:1,0,265 +chr11 61731534 rs195155 G T 371.73 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.805;DB;DP=41;Dels=0.02;FS=29.588;HaplotypeScore=5.4690;MLEAC=6;MLEAF=0.750;MQ=21.83;MQ0=0;MQRankSum=1.956;QD=9.07;ReadPosRankSum=0.118;SB=-1.954e+01 GT:AD:DP:GQ:PL 0/1:4,6:10:17:99,0,17 1/1:3,5:8:12:139,12,0 0/1:9,5:14:8:102,0,8 1/1:4,4:8:9:76,9,0 +chr11 61912875 . C T 246.09 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.211;DP=29;Dels=0.00;FS=4.973;HaplotypeScore=4.4643;MLEAC=4;MLEAF=0.500;MQ=23.09;MQ0=0;MQRankSum=0.000;QD=8.49;ReadPosRankSum=1.833;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:18:18,0,52 0/1:4,1:5:21:21,0,23 0/1:3,5:8:7:124,0,7 0/1:2,6:8:45:125,0,45 +chr11 61917721 . C T 44.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.648;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=2.3665;MLEAC=3;MLEAF=0.375;MQ=28.80;MQ0=0;MQRankSum=-2.376;QD=0.85;ReadPosRankSum=2.216;SB=0.924 GT:AD:DP:GQ:PL 0/1:14,3:17:58:58,0,254 0/1:16,2:18:19:19,0,310 0/0:15,3:18:5:0,5,266 0/1:16,2:18:9:9,0,150 +chr11 62289775 . C G 55.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.383;DP=276;Dels=0.00;FS=21.594;HaplotypeScore=8.3126;MLEAC=3;MLEAF=0.375;MQ=19.19;MQ0=0;MQRankSum=3.422;QD=0.27;ReadPosRankSum=-1.753;SB=-6.147e-02 GT:AD:DP:GQ:PL 0/1:68,3:72:21:21,0,356 0/1:68,3:72:29:29,0,241 0/0:71,0:71:36:0,36,334 0/1:58,2:61:49:49,0,103 +chr11 62292850 . A G 141.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.853;DP=228;Dels=0.01;FS=69.053;HaplotypeScore=9.5882;MLEAC=4;MLEAF=0.500;MQ=19.34;MQ0=0;MQRankSum=2.543;QD=0.62;ReadPosRankSum=-1.512;SB=-1.228e+00 GT:AD:DP:GQ:PL 0/1:52,6:58:77:77,0,326 0/1:56,6:62:90:90,0,419 0/1:51,3:54:10:10,0,333 0/1:47,4:51:6:6,0,438 +chr11 62327676 . A T 148.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.738;DP=203;Dels=0.00;FS=137.330;HaplotypeScore=2.1550;MLEAC=4;MLEAF=0.500;MQ=33.45;MQ0=0;MQRankSum=-3.255;QD=0.73;ReadPosRankSum=2.901;SB=-7.791e-02 GT:AD:DP:GQ:PL 0/1:47,9:56:98:98,0,1295 0/1:47,5:52:26:26,0,1150 0/1:44,5:50:49:49,0,1009 0/1:40,5:45:18:18,0,1141 +chr11 62348902 . A G 33.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.553;DP=71;Dels=0.01;FS=36.390;HaplotypeScore=4.5293;MLEAC=3;MLEAF=0.375;MQ=32.30;MQ0=0;MQRankSum=-2.671;QD=0.73;ReadPosRankSum=-1.155;SB=-1.046e+00 GT:AD:DP:GQ:PL 0/1:12,2:14:23:23,0,336 0/1:12,2:14:42:42,0,180 0/0:23,1:24:15:0,15,487 0/1:15,3:18:11:11,0,181 +chr11 62396428 . G T 44.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.648;DP=261;Dels=0.00;FS=91.759;HaplotypeScore=20.1099;MLEAC=2;MLEAF=0.250;MQ=34.74;MQ0=0;MQRankSum=-5.105;QD=0.33;ReadPosRankSum=0.344;SB=-8.057e-01 GT:AD:DP:GQ:PL 0/0:51,4:56:34:0,34,1484 0/1:59,8:67:40:40,0,1764 0/0:63,4:67:68:0,68,1718 0/1:61,9:70:46:46,0,1707 +chr11 62397971 . C T 49.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.297;DP=139;Dels=0.01;FS=102.496;HaplotypeScore=8.7931;MLEAC=2;MLEAF=0.250;MQ=33.80;MQ0=0;MQRankSum=-2.496;QD=0.62;ReadPosRankSum=0.206;SB=-1.221e+00 GT:AD:DP:GQ:PL 0/0:22,3:25:11:0,11,670 0/1:37,4:41:28:28,0,980 0/1:33,6:39:63:63,0,911 0/0:32,1:33:52:0,52,926 +chr11 62520366 rs139609670 C T 54.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.777;DB;DP=148;Dels=0.00;FS=64.327;HaplotypeScore=2.5254;MLEAC=2;MLEAF=0.250;MQ=33.12;MQ0=0;MQRankSum=-2.736;QD=0.64;ReadPosRankSum=-1.883;SB=-1.095e+00 GT:AD:DP:GQ:PL 0/1:32,7:39:80:80,0,932 0/1:41,5:46:15:15,0,1004 0/0:37,2:39:30:0,30,1012 0/0:23,1:24:29:0,29,638 +chr11 62606689 . C A 34.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.846;DP=88;Dels=0.01;FS=17.040;HaplotypeScore=2.2653;MLEAC=2;MLEAF=0.250;MQ=34.72;MQ0=0;MQRankSum=-3.197;QD=0.85;ReadPosRankSum=0.442;SB=0.955 GT:AD:DP:GQ:PL 0/1:14,3:17:53:53,0,247 0/0:22,1:23:22:0,22,587 0/0:23,1:24:30:0,30,679 0/1:20,3:23:23:23,0,561 +chr11 62678421 . T G 61.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.930;DP=158;Dels=0.00;FS=71.919;HaplotypeScore=4.5782;MLEAC=2;MLEAF=0.250;MQ=34.67;MQ0=0;MQRankSum=-2.880;QD=0.76;ReadPosRankSum=-0.428;SB=-2.713e+00 GT:AD:DP:GQ:PL 0/1:28,5:33:89:89,0,649 0/0:32,2:34:8:0,8,642 0/0:43,0:43:96:0,96,1155 0/1:42,5:48:13:13,0,872 +chr11 62747145 rs3017671 A G 1768.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.670;DB;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7432;MLEAC=8;MLEAF=1.00;MQ=29.61;MQ0=0;MQRankSum=1.670;QD=28.53;ReadPosRankSum=0.804;SB=-8.909e+02 GT:AD:DP:GQ:PL 1/1:2,22:24:66:763,66,0 1/1:1,11:12:33:356,33,0 1/1:2,12:14:30:357,30,0 1/1:1,10:12:30:332,30,0 +chr11 62768113 rs4149182 C G 141.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.072;DB;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=0.7331;MLEAC=4;MLEAF=0.500;MQ=31.51;MQ0=0;MQRankSum=-2.613;QD=4.72;ReadPosRankSum=1.558;SB=-1.179e-02 GT:AD:DP:GQ:PL 0/1:3,1:4:16:16,0,95 0/1:4,3:7:53:53,0,137 0/1:8,3:11:41:41,0,223 0/1:4,3:7:74:74,0,87 +chr11 62782234 . G T 145.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.417;DP=194;Dels=0.03;FS=110.597;HaplotypeScore=14.2148;MLEAC=4;MLEAF=0.500;MQ=24.08;MQ0=0;MQRankSum=0.436;QD=1.03;ReadPosRankSum=-0.065;SB=-2.127e+00 GT:AD:DP:GQ:PL 0/0:45,4:49:1:0,1,668 0/1:41,5:46:52:52,0,462 0/1:45,8:53:75:75,0,557 0/1:36,5:41:59:59,0,400 +chr11 62886800 rs4963245 G C 258.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.876;DB;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=2.4132;MLEAC=1;MLEAF=0.125;MQ=37.17;MQ0=0;MQRankSum=-3.543;QD=6.82;ReadPosRankSum=-1.836;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:24,13:37:99:295,0,814 0/0:43,0:44:99:0,123,1664 0/0:34,0:34:96:0,96,1280 0/0:37,0:37:99:0,108,1383 +chr11 63104008 rs517391 A G 717.59 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.209;DB;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.2256;MLEAC=5;MLEAF=0.625;MQ=31.02;MQ0=0;MQRankSum=0.810;QD=18.88;ReadPosRankSum=1.104;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:3,1:4:22:22,0,65 1/1:3,13:16:39:477,39,0 0/1:4,4:8:77:117,0,77 0/1:5,5:10:99:147,0,110 +chr11 63149607 . T G 40.75 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.490;DP=291;Dels=0.00;FS=153.229;HaplotypeScore=14.1334;MLEAC=2;MLEAF=0.250;MQ=30.84;MQ0=0;MQRankSum=-5.385;QD=0.36;ReadPosRankSum=2.475;SB=-3.178e+00 GT:AD:DP:GQ:PL 0/0:86,7:93:9:0,9,1743 0/1:67,10:77:72:72,0,1342 0/0:81,4:85:59:0,59,1648 0/1:33,3:36:8:8,0,672 +chr11 63277927 . C G 98.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.035;DP=90;Dels=0.00;FS=83.813;HaplotypeScore=1.2455;MLEAC=3;MLEAF=0.375;MQ=32.97;MQ0=0;MQRankSum=-2.825;QD=1.83;ReadPosRankSum=-1.270;SB=-1.258e+00 GT:AD:DP:GQ:PL 0/1:13,3:16:61:61,0,278 0/1:16,4:20:36:36,0,460 0/0:34,2:36:35:0,35,1106 0/1:15,3:18:45:45,0,383 +chr11 63320503 . GC G 196.98 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.236;DP=81;FS=18.182;HaplotypeScore=66.3115;MLEAC=4;MLEAF=0.500;MQ=20.12;MQ0=0;MQRankSum=0.244;QD=2.43;ReadPosRankSum=0.244;SB=-4.231e-01 GT:AD:DP:GQ:PL 0/1:17,2:15:9:9,0,222 0/1:14,5:12:91:91,0,112 0/1:14,6:12:99:119,0,100 0/1:14,4:7:29:29,0,40 +chr11 63671560 . C A 35.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.736;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.2228;MLEAC=3;MLEAF=0.375;MQ=26.02;MQ0=0;MQRankSum=0.611;QD=1.25;ReadPosRankSum=-2.372;SB=-3.212e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:39:39,0,107 0/1:8,1:9:24:24,0,101 0/0:11,0:11:18:0,18,193 0/1:8,1:9:15:15,0,116 +chr11 63676298 . G A 117.11 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.876;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.8675;MLEAC=4;MLEAF=1.00;MQ=22.37;MQ0=0;MQRankSum=2.219;QD=11.71;ReadPosRankSum=-0.361;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:3,2:5:6:70,6,0 1/1:2,3:5:9:82,9,0 ./. +chr11 63720119 . G C 269.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.104;DP=55;Dels=0.00;FS=28.191;HaplotypeScore=3.2244;MLEAC=4;MLEAF=0.500;MQ=29.43;MQ0=0;MQRankSum=-0.895;QD=4.90;ReadPosRankSum=1.701;SB=-1.344e-01 GT:AD:DP:GQ:PL 0/1:8,6:15:99:147,0,136 0/1:9,4:13:98:98,0,127 0/1:13,3:16:53:53,0,279 0/1:10,1:11:14:14,0,210 +chr11 63974835 . C G 110.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.896;DP=93;Dels=0.03;FS=0.000;HaplotypeScore=11.6693;MLEAC=3;MLEAF=0.375;MQ=26.64;MQ0=0;MQRankSum=-0.771;QD=1.52;ReadPosRankSum=0.880;SB=-4.196e+01 GT:AD:DP:GQ:PL 0/1:13,3:16:35:35,0,194 0/1:23,5:28:89:89,0,176 0/1:24,3:27:30:30,0,473 0/0:18,1:19:15:0,15,155 +chr11 63990469 . T G 99.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.718;DP=68;Dels=0.01;FS=7.401;HaplotypeScore=2.3512;MLEAC=3;MLEAF=0.375;MQ=31.19;MQ0=0;MQRankSum=-2.440;QD=3.56;ReadPosRankSum=-0.295;SB=-3.788e+00 GT:AD:DP:GQ:PL 0/1:13,4:17:81:81,0,236 0/0:20,2:22:0:0,0,511 0/0:17,0:17:39:0,39,454 0/1:8,3:11:58:58,0,176 +chr11 64010835 . C A 131.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.394;DP=88;Dels=0.01;FS=2.351;HaplotypeScore=6.9902;MLEAC=4;MLEAF=0.500;MQ=31.69;MQ0=0;MQRankSum=-2.561;QD=1.50;ReadPosRankSum=-0.335;SB=-2.256e-01 GT:AD:DP:GQ:PL 0/1:19,2:21:13:13,0,512 0/1:18,3:21:16:16,0,459 0/1:21,3:24:31:31,0,496 0/1:16,5:21:99:114,0,364 +chr11 64033600 . T A 33.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.815;DP=107;Dels=0.00;FS=2.443;HaplotypeScore=3.6632;MLEAC=1;MLEAF=0.125;MQ=34.05;MQ0=0;MQRankSum=-1.396;QD=1.48;ReadPosRankSum=-0.290;SB=-1.165e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:60:0,60,690 0/0:25,0:25:60:0,60,764 0/0:32,0:32:54:0,54,636 0/1:19,4:23:70:70,0,487 +chr11 64053977 . T A 277.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.743;DP=89;Dels=0.01;FS=153.809;HaplotypeScore=1.4434;MLEAC=4;MLEAF=0.500;MQ=34.31;MQ0=0;MQRankSum=-3.630;QD=3.12;ReadPosRankSum=-0.199;SB=-4.129e-01 GT:AD:DP:GQ:PL 0/1:15,4:19:99:108,0,391 0/1:18,4:22:58:58,0,527 0/1:25,3:28:18:18,0,786 0/1:12,7:19:99:136,0,288 +chr11 64064937 . AG A 437.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.207;DP=88;FS=4.337;HaplotypeScore=54.1747;MLEAC=4;MLEAF=0.500;MQ=18.81;MQ0=0;MQRankSum=0.752;QD=4.98;ReadPosRankSum=-1.207;SB=2.100e-03 GT:AD:DP:GQ:PL 0/1:13,7:9:9:192,0,9 0/1:13,4:10:47:47,0,63 0/1:25,2:17:70:136,0,70 0/1:15,6:10:99:114,0,161 +chr11 64067765 . T A 44.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.681;DP=25;Dels=0.04;FS=3.010;HaplotypeScore=1.5840;MLEAC=2;MLEAF=0.250;MQ=23.07;MQ0=0;MQRankSum=-1.247;QD=2.76;ReadPosRankSum=2.440;SB=0.408 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,64 0/1:6,5:11:63:63,0,88 1/1:3,1:4:3:23,3,0 0/0:5,0:5:9:0,9,84 +chr11 64071272 rs117629442 G C 499.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.177;DB;DP=103;Dels=0.00;FS=2.895;HaplotypeScore=0.5389;MLEAC=2;MLEAF=0.250;MQ=34.34;MQ0=0;MQRankSum=0.821;QD=10.41;ReadPosRankSum=1.029;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:17,9:26:99:265,0,519 0/1:13,9:22:99:276,0,338 0/0:24,0:24:69:0,69,900 0/0:31,0:31:87:0,87,1056 +chr11 64088277 . G T 40.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.960;DP=245;Dels=0.01;FS=92.489;HaplotypeScore=12.5608;MLEAC=2;MLEAF=0.250;MQ=29.09;MQ0=0;MQRankSum=-4.257;QD=0.31;ReadPosRankSum=1.663;SB=1.05 GT:AD:DP:GQ:PL 0/0:60,4:64:99:0,105,1467 0/1:54,8:62:23:23,0,1147 0/1:57,10:67:59:59,0,1350 0/0:47,3:50:61:0,61,1095 +chr11 64120435 rs489419 T C 85.67 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.361;DB;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.2145;MLEAC=6;MLEAF=1.00;MQ=15.93;MQ0=0;MQRankSum=2.219;QD=7.14;ReadPosRankSum=-1.307;SB=-3.043e+01 GT:AD:DP:GQ:PL 1/1:1,1:2:3:26,3,0 1/1:2,1:3:3:28,3,0 1/1:5,2:7:6:67,6,0 ./. +chr11 64121011 . T A 60.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.761;DP=25;Dels=0.00;FS=2.740;HaplotypeScore=1.5691;MLEAC=2;MLEAF=0.250;MQ=22.68;MQ0=0;MQRankSum=2.015;QD=4.33;ReadPosRankSum=2.463;SB=0.326 GT:AD:DP:GQ:PL 0/1:3,1:4:24:24,0,42 0/0:4,0:4:9:0,9,79 0/0:7,0:7:6:0,6,64 0/1:7,3:10:17:77,0,17 +chr11 64121366 . C G 79.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.471;DP=74;Dels=0.04;FS=22.445;HaplotypeScore=9.9752;MLEAC=3;MLEAF=0.375;MQ=24.74;MQ0=0;MQRankSum=-0.275;QD=1.55;ReadPosRankSum=-0.824;SB=-1.703e-01 GT:AD:DP:GQ:PL 0/1:11,3:14:36:36,0,201 0/1:15,1:17:12:12,0,116 0/0:22,0:22:45:0,45,532 0/1:14,4:18:74:74,0,191 +chr11 64126839 . T G 42.94 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.950;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.1252;MLEAC=1;MLEAF=0.125;MQ=24.78;MQ0=0;MQRankSum=0.839;QD=5.37;ReadPosRankSum=-1.174;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,25 0/0:5,0:5:9:0,9,102 0/0:6,0:6:9:0,9,89 0/1:5,3:8:46:78,0,46 +chr11 64427655 . T A 36.23 . AC=4;AF=1.00;AN=4;BaseQRankSum=-0.731;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.3401;MLEAC=4;MLEAF=1.00;MQ=11.70;MQ0=0;MQRankSum=0.731;QD=7.25;ReadPosRankSum=0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:23,3,0 ./. 1/1:0,3:3:6:47,6,0 ./. +chr11 64428712 . C A 70.07 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.027;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9941;MLEAC=4;MLEAF=0.500;MQ=29.07;MQ0=0;MQRankSum=0.606;QD=1.52;ReadPosRankSum=-1.611;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:16:16,0,330 0/1:10,1:11:15:15,0,43 0/1:11,1:12:4:4,0,240 0/1:5,3:8:76:76,0,127 +chr11 64571753 . G A 255.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.283;DP=84;Dels=0.02;FS=2.759;HaplotypeScore=7.9817;MLEAC=4;MLEAF=0.500;MQ=23.25;MQ0=0;MQRankSum=-0.192;QD=3.04;ReadPosRankSum=0.172;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:17,4:21:97:97,0,142 0/1:11,3:14:17:58,0,17 0/1:18,5:23:88:88,0,198 0/1:18,6:24:55:55,0,148 +chr11 64604056 . C T 158.88 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.140;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=10.6245;MLEAC=5;MLEAF=0.833;MQ=16.38;MQ0=0;MQRankSum=1.899;QD=4.81;ReadPosRankSum=-2.051;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,5:11:16:85,0,16 1/1:3,2:5:3:34,3,0 1/1:11,4:16:9:79,9,0 ./. +chr11 64757185 . C T 348.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.131;DP=51;Dels=0.00;FS=25.237;HaplotypeScore=1.9728;MLEAC=4;MLEAF=0.500;MQ=31.02;MQ0=0;MQRankSum=2.677;QD=6.83;ReadPosRankSum=-0.525;SB=1.864e-03 GT:AD:DP:GQ:PL 0/1:9,4:13:90:90,0,151 0/1:8,3:11:78:78,0,83 0/1:7,5:12:76:141,0,76 0/1:12,3:15:82:82,0,175 +chr11 64855986 rs2282498 A G 829.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.704;DB;DP=85;Dels=0.00;FS=10.079;HaplotypeScore=0.6836;MLEAC=4;MLEAF=0.500;MQ=37.93;MQ0=0;MQRankSum=-0.875;QD=9.76;ReadPosRankSum=0.875;SB=-3.800e+02 GT:AD:DP:GQ:PL 0/1:13,6:19:99:193,0,422 0/1:10,10:21:99:335,0,353 0/1:15,2:17:45:45,0,465 0/1:18,10:28:99:299,0,576 +chr11 64864342 . C A 45.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.286;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.2447;MLEAC=2;MLEAF=0.250;MQ=27.99;MQ0=0;MQRankSum=1.398;QD=3.26;ReadPosRankSum=0.615;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:22:22,0,57 0/0:7,0:7:6:0,6,62 0/0:5,0:5:9:0,9,106 0/1:6,2:8:51:64,0,51 +chr11 64874967 . T C 43.31 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.128;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.9316;MLEAC=1;MLEAF=0.125;MQ=25.61;MQ0=0;MQRankSum=0.213;QD=6.19;ReadPosRankSum=0.979;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:6:0,6,82 0/0:7,0:7:6:0,6,78 0/0:10,1:11:3:0,3,43 0/1:4,3:7:31:78,0,31 +chr11 64882789 rs1129195 C T 2367.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.542;DB;DP=205;Dels=0.00;FS=22.367;HaplotypeScore=3.7141;MLEAC=4;MLEAF=0.500;MQ=36.78;MQ0=0;MQRankSum=-0.747;QD=11.55;ReadPosRankSum=0.525;SB=-7.530e+02 GT:AD:DP:GQ:PL 0/1:30,19:50:99:589,0,957 0/1:33,16:49:99:505,0,916 0/1:27,24:51:99:738,0,824 0/1:34,20:55:99:578,0,949 +chr11 64902002 rs10895986 C A 106.31 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.731;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=33.43;MQ0=0;MQRankSum=0.731;QD=17.72;ReadPosRankSum=0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,1:2:23:33,0,23 ./. 1/1:1,1:2:3:39,3,0 1/1:0,2:2:6:73,6,0 +chr11 64942834 . G C 35.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.307;DP=164;Dels=0.00;FS=55.515;HaplotypeScore=0.1446;MLEAC=3;MLEAF=0.375;MQ=8.69;MQ0=0;MQRankSum=3.535;QD=0.43;ReadPosRankSum=-1.183;SB=3.45 GT:AD:DP:GQ:PL 0/0:33,3:36:3:0,3,34 0/1:36,3:39:38:45,0,38 1/1:41,3:44:3:32,3,0 0/0:42,3:45:9:0,9,90 +chr11 64951080 rs112850465 G A 38.38 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.229;DB;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=2.4965;MLEAC=1;MLEAF=0.125;MQ=23.53;MQ0=0;MQRankSum=1.603;QD=2.40;ReadPosRankSum=-0.114;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,66 0/0:19,0:19:15:0,15,146 0/1:12,3:15:74:74,0,80 0/0:13,0:13:15:0,15,142 +chr11 64974057 . G C 49.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.932;DP=114;Dels=0.00;FS=18.367;HaplotypeScore=7.0630;MLEAC=3;MLEAF=0.375;MQ=27.78;MQ0=0;MQRankSum=-0.495;QD=0.54;ReadPosRankSum=-1.035;SB=0.714 GT:AD:DP:GQ:PL 0/1:27,3:30:31:31,0,422 0/1:31,3:34:3:3,0,645 0/1:23,4:27:56:56,0,436 0/0:22,1:23:12:0,12,336 +chr11 65046381 . A G 38.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.225;DP=106;Dels=0.00;FS=2.408;HaplotypeScore=23.4895;MLEAC=3;MLEAF=0.375;MQ=21.98;MQ0=0;MQRankSum=-1.332;QD=0.45;ReadPosRankSum=1.470;SB=-6.752e-01 GT:AD:DP:GQ:PL 0/1:27,3:31:5:5,0,244 0/1:22,7:30:38:38,0,179 0/1:23,2:25:35:35,0,173 0/0:19,1:20:3:0,3,27 +chr11 65113832 . T C 31.47 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.433;DP=99;Dels=0.00;FS=5.118;HaplotypeScore=2.9980;MLEAC=2;MLEAF=0.250;MQ=33.97;MQ0=0;MQRankSum=-3.634;QD=0.59;ReadPosRankSum=-0.702;SB=-8.629e-01 GT:AD:DP:GQ:PL 0/1:20,4:24:63:63,0,412 0/0:16,0:16:39:0,39,494 0/0:28,1:30:43:0,43,766 0/1:25,4:29:8:8,0,508 +chr11 65146753 . C A 57.72 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.510;DP=31;Dels=0.00;FS=2.667;HaplotypeScore=2.1268;MLEAC=5;MLEAF=0.625;MQ=21.30;MQ0=0;MQRankSum=2.661;QD=1.86;ReadPosRankSum=2.774;SB=0.031 GT:AD:DP:GQ:PL 0/1:6,1:7:20:20,0,21 0/1:9,1:10:18:20,0,18 1/1:6,1:7:3:32,3,0 0/1:6,1:7:28:28,0,37 +chr11 65300120 . G A 286.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=-3.159;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=6.8405;MLEAC=5;MLEAF=0.625;MQ=30.50;MQ0=0;MQRankSum=-2.379;QD=5.62;ReadPosRankSum=2.696;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:19:19,0,310 0/1:11,8:19:99:197,0,171 0/1:11,2:13:20:20,0,315 1/1:1,3:4:9:95,9,0 +chr11 65320865 . T A 45.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.121;DP=31;Dels=0.00;FS=16.298;HaplotypeScore=2.4625;MLEAC=2;MLEAF=0.250;MQ=32.48;MQ0=0;MQRankSum=-0.238;QD=2.37;ReadPosRankSum=-0.781;SB=3.93 GT:AD:DP:GQ:PL 0/0:5,1:6:9:0,9,88 0/0:6,0:6:12:0,12,152 0/1:10,2:12:40:40,0,236 0/1:5,2:7:46:46,0,120 +chr11 65547333 rs12146493 G A 105.58 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.291;DB;DP=58;Dels=0.02;FS=3.812;HaplotypeScore=2.7038;MLEAC=3;MLEAF=0.375;MQ=25.04;MQ0=0;MQRankSum=0.270;QD=2.25;ReadPosRankSum=-1.405;SB=-1.619e+01 GT:AD:DP:GQ:PL 0/1:9,3:12:93:96,0,93 0/0:11,0:11:12:0,12,155 0/1:15,4:19:11:11,0,243 0/1:13,2:15:41:41,0,262 +chr11 65630465 . G T 40.52 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.539;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=9.8341;MLEAC=3;MLEAF=0.375;MQ=18.69;MQ0=0;MQRankSum=-0.305;QD=1.31;ReadPosRankSum=2.415;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:17:19,0,17 0/1:7,3:10:35:35,0,88 0/1:13,3:16:29:29,0,121 0/0:9,1:10:9:0,9,77 +chr11 65684855 rs9326360 A G 2434.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.280;DB;DP=111;Dels=0.04;FS=0.000;HaplotypeScore=6.4555;MLEAC=8;MLEAF=1.00;MQ=25.98;MQ0=0;MQRankSum=2.523;QD=21.93;ReadPosRankSum=4.179;SB=-3.439e+02 GT:AD:DP:GQ:PL 1/1:6,27:33:18:756,18,0 1/1:3,20:23:24:499,24,0 1/1:4,26:30:66:733,66,0 1/1:3,18:21:45:485,45,0 +chr11 65714350 . G C 78.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.467;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=2.8137;MLEAC=3;MLEAF=0.375;MQ=26.93;MQ0=0;MQRankSum=1.297;QD=2.03;ReadPosRankSum=1.453;SB=-2.654e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:23:23,0,51 0/0:12,0:12:15:0,15,156 0/1:14,2:16:45:45,0,141 0/1:10,2:12:54:54,0,79 +chr11 65733289 rs556643 G A 1837.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.256;DB;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3552;MLEAC=3;MLEAF=0.375;MQ=36.62;MQ0=0;MQRankSum=-0.714;QD=14.94;ReadPosRankSum=0.753;SB=-8.260e+02 GT:AD:DP:GQ:PL 0/1:24,16:40:99:501,0,696 0/0:45,0:45:99:0,108,1437 0/1:21,28:49:99:968,0,631 0/1:20,14:34:99:412,0,665 +chr11 65733393 rs688862 C T 1128.03 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.769;DB;DP=95;Dels=0.02;FS=30.007;HaplotypeScore=9.4148;MLEAC=5;MLEAF=0.625;MQ=32.02;MQ0=0;MQRankSum=1.522;QD=11.87;ReadPosRankSum=2.413;SB=-2.747e+01 GT:AD:DP:GQ:PL 0/1:17,5:22:99:140,0,380 1/1:4,18:22:7:628,7,0 0/1:23,9:32:99:244,0,368 0/1:12,5:17:99:160,0,232 +chr11 65820374 . T C 477.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.371;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=2.7369;MLEAC=4;MLEAF=0.500;MQ=26.12;MQ0=0;MQRankSum=1.094;QD=6.92;ReadPosRankSum=3.281;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,8:21:99:208,0,140 0/1:16,2:18:32:32,0,241 0/1:9,8:17:51:185,0,51 0/1:8,4:12:86:95,0,86 +chr11 65835499 . A G 79.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.371;DP=180;Dels=0.00;FS=38.164;HaplotypeScore=11.8930;MLEAC=1;MLEAF=0.125;MQ=31.90;MQ0=0;MQRankSum=0.851;QD=1.76;ReadPosRankSum=-0.139;SB=-6.305e+00 GT:AD:DP:GQ:PL 0/0:45,3:48:25:0,25,1238 0/1:37,8:45:99:115,0,850 0/0:40,2:42:55:0,55,901 0/0:43,2:45:16:0,16,980 +chr11 65977910 . C T 61.64 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.347;DP=103;Dels=0.00;FS=9.450;HaplotypeScore=0.6933;MLEAC=3;MLEAF=0.375;MQ=32.19;MQ0=0;MQRankSum=-2.822;QD=0.75;ReadPosRankSum=-2.152;SB=0.615 GT:AD:DP:GQ:PL 0/0:19,2:21:9:0,9,425 0/1:23,5:28:83:83,0,557 0/1:27,2:29:10:10,0,462 0/1:23,2:25:10:10,0,402 +chr11 65988028 . A G 64.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.149;DP=63;Dels=0.00;FS=2.881;HaplotypeScore=4.3964;MLEAC=4;MLEAF=0.500;MQ=27.42;MQ0=0;MQRankSum=-1.806;QD=1.41;ReadPosRankSum=1.269;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:8:8,0,211 0/1:12,3:16:56:56,0,192 0/0:16,1:17:0:0,0,321 0/1:11,3:14:40:40,0,86 +chr11 66010333 . T A 51.28 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.839;DP=48;Dels=0.00;FS=4.987;HaplotypeScore=1.1719;MLEAC=2;MLEAF=0.250;MQ=24.50;MQ0=0;MQRankSum=-1.839;QD=2.23;ReadPosRankSum=2.998;SB=0.684 GT:AD:DP:GQ:PL 0/1:10,3:13:58:58,0,101 0/1:7,3:10:34:34,0,77 0/0:15,1:16:9:0,9,317 0/0:9,0:9:9:0,9,111 +chr11 66030465 . C G 85.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.080;DP=67;Dels=0.00;FS=10.360;HaplotypeScore=5.8794;MLEAC=3;MLEAF=0.375;MQ=31.82;MQ0=0;MQRankSum=-1.862;QD=1.65;ReadPosRankSum=0.556;SB=-1.794e+00 GT:AD:DP:GQ:PL 0/0:14,0:15:21:0,21,273 0/1:15,1:16:1:1,0,311 0/1:15,6:21:99:111,0,293 0/1:13,2:15:13:13,0,347 +chr11 66052917 . C G 51.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.300;DP=96;Dels=0.02;FS=7.298;HaplotypeScore=4.7283;MLEAC=3;MLEAF=0.375;MQ=28.03;MQ0=0;MQRankSum=-1.159;QD=0.74;ReadPosRankSum=-0.335;SB=10.42 GT:AD:DP:GQ:PL 0/1:13,1:15:6:6,0,199 0/0:24,2:26:5:0,5,461 0/1:26,4:30:80:80,0,351 0/1:22,1:23:4:4,0,272 +chr11 66082474 . A G 32.91 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.142;DP=34;Dels=0.00;FS=19.638;HaplotypeScore=3.4937;MLEAC=4;MLEAF=0.500;MQ=19.58;MQ0=0;MQRankSum=-0.213;QD=0.97;ReadPosRankSum=0.569;SB=0.494 GT:AD:DP:GQ:PL 0/1:8,1:9:13:13,0,66 0/1:5,1:6:19:19,0,26 0/1:8,2:10:27:27,0,122 0/1:8,1:9:16:16,0,82 +chr11 66193525 . A C 314.40 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.809;DP=66;Dels=0.03;FS=3.212;HaplotypeScore=6.7679;MLEAC=4;MLEAF=0.500;MQ=24.35;MQ0=0;MQRankSum=-1.128;QD=4.76;ReadPosRankSum=1.833;SB=14.94 GT:AD:DP:GQ:PL 0/1:6,8:14:24:148,0,24 0/1:14,6:21:72:72,0,163 0/1:13,5:18:93:93,0,133 1/1:6,4:11:6:45,6,0 +chr11 66287237 . C T 85.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.991;DP=71;Dels=0.01;FS=87.965;HaplotypeScore=10.3942;MLEAC=3;MLEAF=0.375;MQ=28.29;MQ0=0;MQRankSum=-0.209;QD=1.65;ReadPosRankSum=0.173;SB=-6.797e-01 GT:AD:DP:GQ:PL 0/0:18,1:19:10:0,10,472 0/1:9,3:12:78:78,0,207 0/1:17,3:20:44:44,0,366 0/1:16,3:19:5:5,0,330 +chr11 66329108 . G C 78.36 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.037;DP=46;Dels=0.02;FS=26.507;HaplotypeScore=1.0089;MLEAC=2;MLEAF=0.250;MQ=34.39;MQ0=0;MQRankSum=0.735;QD=2.90;ReadPosRankSum=-0.651;SB=-4.259e+00 GT:AD:DP:GQ:PL 0/0:9,0:9:18:0,18,249 0/1:10,4:14:99:111,0,222 0/0:10,0:10:18:0,18,207 0/1:11,1:12:6:6,0,321 +chr11 66392880 rs11550057 C T 771.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.500;DB;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.3726;MLEAC=3;MLEAF=0.375;MQ=29.56;MQ0=0;MQRankSum=0.555;QD=10.57;ReadPosRankSum=-0.021;SB=-1.810e+02 GT:AD:DP:GQ:PL 0/0:26,0:26:66:0,66,737 0/1:18,11:29:99:310,0,378 0/1:16,13:29:99:340,0,420 0/1:9,6:15:58:165,0,58 +chr11 66455758 . T C 56.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.040;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7411;MLEAC=2;MLEAF=0.250;MQ=23.69;MQ0=0;MQRankSum=0.998;QD=2.58;ReadPosRankSum=-0.615;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,1:10:12:0,12,114 0/1:6,3:10:47:47,0,62 0/0:14,0:14:15:0,15,128 0/1:10,2:12:51:51,0,67 +chr11 66529279 . T G 47.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.036;DP=112;Dels=0.01;FS=42.326;HaplotypeScore=1.2263;MLEAC=3;MLEAF=0.375;MQ=24.03;MQ0=0;MQRankSum=1.778;QD=0.55;ReadPosRankSum=-1.884;SB=-8.259e-01 GT:AD:DP:GQ:PL 0/1:24,2:26:34:34,0,172 0/1:30,1:32:14:14,0,95 0/1:26,2:28:40:40,0,140 0/0:23,1:25:2:0,2,217 +chr11 66610366 . C G 61.23 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.031;DP=31;Dels=0.00;FS=2.621;HaplotypeScore=3.4147;MLEAC=4;MLEAF=0.500;MQ=24.65;MQ0=0;MQRankSum=0.780;QD=2.55;ReadPosRankSum=-2.902;SB=-1.188e-02 GT:AD:DP:GQ:PL 1/1:3,1:4:3:32,3,0 0/1:6,2:8:46:46,0,134 0/1:10,2:12:26:26,0,142 0/0:7,0:7:6:0,6,71 +chr11 66611885 . T A 63.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.612;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.2751;MLEAC=3;MLEAF=0.375;MQ=34.06;MQ0=0;MQRankSum=-2.904;QD=0.80;ReadPosRankSum=1.154;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,1:25:28:0,28,621 0/1:23,4:27:28:28,0,486 0/1:31,2:33:1:1,0,644 0/1:15,4:19:74:74,0,347 +chr11 66617021 . A G 51.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.921;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.2553;MLEAC=3;MLEAF=0.375;MQ=21.71;MQ0=0;MQRankSum=0.482;QD=2.22;ReadPosRankSum=-0.833;SB=-1.107e-01 GT:AD:DP:GQ:PL 0/1:5,2:7:34:34,0,42 0/0:3,0:3:3:0,3,28 0/1:4,3:7:40:44,0,40 0/1:8,1:9:14:14,0,63 +chr11 66617413 . A G 39.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.602;DP=92;Dels=0.01;FS=38.440;HaplotypeScore=2.1436;MLEAC=3;MLEAF=0.375;MQ=29.28;MQ0=0;MQRankSum=-0.664;QD=0.56;ReadPosRankSum=0.119;SB=-7.325e-01 GT:AD:DP:GQ:PL 0/1:22,3:25:13:13,0,592 0/1:21,3:24:42:42,0,405 0/1:19,2:21:26:26,0,323 0/0:19,2:21:5:0,5,323 +chr11 66637974 . T C 34.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.879;DP=41;Dels=0.05;FS=0.000;HaplotypeScore=3.7356;MLEAC=3;MLEAF=0.375;MQ=31.02;MQ0=0;MQRankSum=-2.158;QD=1.03;ReadPosRankSum=0.560;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:16:16,0,128 0/1:9,1:10:8:8,0,261 0/1:10,3:13:52:52,0,234 0/0:6,1:7:6:0,6,75 +chr11 67022600 . C A 134.54 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.835;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=15.3187;MLEAC=5;MLEAF=0.625;MQ=20.34;MQ0=0;MQRankSum=1.288;QD=1.84;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,3:23:42:42,0,43 0/1:14,2:16:16:41,0,16 0/1:12,3:15:14:44,0,14 1/1:15,3:18:6:51,6,0 +chr11 67044831 . A G 64.36 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.222;DP=46;Dels=0.00;FS=2.448;HaplotypeScore=2.4691;MLEAC=3;MLEAF=0.375;MQ=30.83;MQ0=0;MQRankSum=-0.565;QD=1.84;ReadPosRankSum=0.377;SB=0.099 GT:AD:DP:GQ:PL 0/0:11,0:11:15:0,15,171 0/1:7,4:11:76:76,0,162 0/1:7,2:9:24:24,0,169 0/1:14,1:15:6:6,0,299 +chr11 67051205 . T A 303.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.000;DP=98;Dels=0.02;FS=59.386;HaplotypeScore=6.8372;MLEAC=4;MLEAF=0.500;MQ=29.03;MQ0=0;MQRankSum=-0.986;QD=3.10;ReadPosRankSum=1.561;SB=1.64 GT:AD:DP:GQ:PL 0/1:19,6:25:99:138,0,313 0/1:18,4:22:68:68,0,166 0/1:22,3:25:46:46,0,405 0/1:20,4:24:94:94,0,307 +chr11 67058894 . T A 99.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.344;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=7.5822;MLEAC=3;MLEAF=0.375;MQ=21.95;MQ0=0;MQRankSum=0.984;QD=2.76;ReadPosRankSum=0.984;SB=17.89 GT:AD:DP:GQ:PL 0/0:9,0:11:9:0,9,94 0/1:10,2:12:44:44,0,47 0/1:11,4:15:51:62,0,51 0/1:5,3:9:36:36,0,43 +chr11 67059664 . C G 56.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.924;DP=75;Dels=0.03;FS=2.989;HaplotypeScore=7.8166;MLEAC=4;MLEAF=0.500;MQ=28.88;MQ0=0;MQRankSum=-2.642;QD=0.76;ReadPosRankSum=-2.126;SB=-3.463e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:19:19,0,378 0/1:20,2:22:19:19,0,382 0/1:13,2:15:22:22,0,251 0/1:13,5:18:39:39,0,203 +chr11 67076810 rs3737460 T G 273.20 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.537;DB;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=14.3831;MLEAC=5;MLEAF=0.625;MQ=21.23;MQ0=0;MQRankSum=0.957;QD=5.94;ReadPosRankSum=-0.562;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,6:15:99:112,0,181 0/1:6,4:10:35:42,0,35 1/1:4,4:8:12:106,12,0 0/1:8,4:12:15:58,0,15 +chr11 67133047 . C G 82.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.303;DP=95;Dels=0.00;FS=66.461;HaplotypeScore=9.1661;MLEAC=3;MLEAF=0.375;MQ=25.53;MQ0=0;MQRankSum=-1.317;QD=1.14;ReadPosRankSum=0.783;SB=1.87 GT:AD:DP:GQ:PL 0/1:12,3:15:44:44,0,131 0/1:20,3:23:6:6,0,151 0/1:29,5:34:74:74,0,418 0/0:23,0:23:15:0,15,159 +chr11 67166366 . A C 240.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.158;DP=132;Dels=0.00;FS=50.250;HaplotypeScore=1.4795;MLEAC=3;MLEAF=0.375;MQ=29.63;MQ0=0;MQRankSum=-3.647;QD=2.27;ReadPosRankSum=0.654;SB=-1.243e+00 GT:AD:DP:GQ:PL 0/0:23,3:26:3:0,3,547 0/1:27,5:32:29:29,0,698 0/1:32,7:39:95:95,0,844 0/1:24,11:35:99:158,0,540 +chr11 67200868 . C G 36.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.368;DP=105;Dels=0.00;FS=34.571;HaplotypeScore=5.5965;MLEAC=2;MLEAF=0.250;MQ=30.69;MQ0=0;MQRankSum=-3.593;QD=0.44;ReadPosRankSum=-3.365;SB=28.44 GT:AD:DP:GQ:PL 0/1:26,4:31:7:7,0,421 0/0:18,2:21:10:0,10,308 0/1:33,4:37:37:37,0,635 0/1:10,3:16:32:32,0,157 +chr11 67201415 . A G 184.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.825;DP=44;Dels=0.00;FS=2.722;HaplotypeScore=1.4728;MLEAC=4;MLEAF=0.500;MQ=29.29;MQ0=0;MQRankSum=0.317;QD=4.20;ReadPosRankSum=1.309;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:12:12,0,80 0/1:8,3:11:57:57,0,126 0/1:9,4:13:99:120,0,112 0/1:9,3:12:38:38,0,168 +chr11 67205978 rs872375 G A 524.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.718;DB;DP=39;Dels=0.00;FS=11.991;HaplotypeScore=0.8463;MLEAC=7;MLEAF=0.875;MQ=23.35;MQ0=0;MQRankSum=1.546;QD=13.44;ReadPosRankSum=-1.190;SB=-6.689e+01 GT:AD:DP:GQ:PL 1/1:3,4:7:9:89,9,0 0/1:7,6:13:99:112,0,122 1/1:3,9:12:21:209,21,0 1/1:2,5:7:15:158,15,0 +chr11 67209930 . C A 62.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.760;DP=66;Dels=0.00;FS=65.989;HaplotypeScore=5.5588;MLEAC=3;MLEAF=0.375;MQ=28.12;MQ0=0;MQRankSum=-1.688;QD=1.23;ReadPosRankSum=0.109;SB=-4.546e+00 GT:AD:DP:GQ:PL 0/1:6,3:9:42:42,0,139 0/0:14,1:15:5:0,5,312 0/1:20,6:26:58:58,0,322 0/1:12,4:16:2:2,0,195 +chr11 67238986 . A C 46.29 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.684;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=5;MLEAF=0.625;MQ=30.10;MQ0=0;MQRankSum=0.684;QD=5.79;ReadPosRankSum=1.221;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:33,3,0 0/1:3,1:4:32:32,0,62 0/0:3,0:3:3:0,3,41 1/1:1,1:2:3:23,3,0 +chr11 67254397 . T G 84.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.743;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=4.7924;MLEAC=4;MLEAF=0.500;MQ=27.63;MQ0=0;MQRankSum=-0.633;QD=1.48;ReadPosRankSum=0.865;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:29:29,0,259 0/1:12,2:14:21:21,0,323 0/1:12,3:15:35:35,0,183 0/1:11,2:13:42:42,0,134 +chr11 67267867 . G C 58.28 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.501;DP=89;Dels=0.01;FS=3.563;HaplotypeScore=4.5425;MLEAC=4;MLEAF=0.500;MQ=24.28;MQ0=0;MQRankSum=-1.016;QD=0.65;ReadPosRankSum=-1.786;SB=-2.611e+01 GT:AD:DP:GQ:PL 0/1:18,3:21:23:23,0,191 0/1:16,1:17:7:7,0,179 0/1:26,5:31:66:66,0,486 0/1:14,5:19:2:2,0,245 +chr11 67490436 . A G 472.47 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.858;DP=246;Dels=0.00;FS=5.672;HaplotypeScore=0.2489;MLEAC=6;MLEAF=0.750;MQ=10.97;MQ0=0;MQRankSum=4.646;QD=2.53;ReadPosRankSum=3.257;SB=-9.082e+01 GT:AD:DP:GQ:PL 1/1:43,13:56:12:145,12,0 0/0:48,11:59:3:0,3,24 0/1:55,16:71:26:211,0,26 1/1:43,17:60:15:163,15,0 +chr11 67490825 rs4930220 A G 50.59 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.886;DB;DP=49;Dels=0.00;FS=8.660;HaplotypeScore=1.3610;MLEAC=5;MLEAF=0.833;MQ=8.55;MQ0=0;MQRankSum=2.641;QD=1.33;ReadPosRankSum=3.503;SB=-1.058e+01 GT:AD:DP:GQ:PL 1/1:5,6:11:3:27,3,0 ./. 1/1:6,6:12:3:24,3,0 1/1:9,5:15:3:34,3,0 +chr11 67804073 rs11556012 C T 40.36 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.655;DB;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.9217;MLEAC=1;MLEAF=0.125;MQ=29.65;MQ0=0;MQRankSum=-1.225;QD=3.10;ReadPosRankSum=0.085;SB=-1.652e+01 GT:AD:DP:GQ:PL 0/0:7,0:7:15:0,15,156 0/0:15,0:16:18:0,18,194 0/1:9,4:13:76:76,0,224 0/0:9,0:9:6:0,6,64 +chr11 68177708 rs576118 G A 92.27 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.741;DB;DP=11;Dels=0.00;FS=3.310;HaplotypeScore=0.2474;MLEAC=3;MLEAF=0.375;MQ=30.98;MQ0=0;MQRankSum=-0.365;QD=11.53;ReadPosRankSum=0.365;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,38 0/0:2,0:2:3:0,3,41 0/1:3,2:5:29:68,0,29 0/1:1,2:3:34:63,0,34 +chr11 68478511 . T A 218.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.566;DP=67;Dels=0.01;FS=7.513;HaplotypeScore=0.4908;MLEAC=3;MLEAF=0.375;MQ=33.38;MQ0=0;MQRankSum=-1.788;QD=4.36;ReadPosRankSum=1.943;SB=0.665 GT:AD:DP:GQ:PL 0/1:16,5:21:99:136,0,223 0/0:16,1:17:13:0,13,340 0/1:13,4:17:91:91,0,196 0/1:9,2:11:34:34,0,227 +chr11 68489173 rs10791992 C T 47.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.03;MQ0=0;MQRankSum=0.736;QD=15.92;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,2:3:6:79,6,0 ./. ./. +chr11 68571490 . G A 120.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.962;DP=106;Dels=0.00;FS=76.180;HaplotypeScore=8.9178;MLEAC=4;MLEAF=0.500;MQ=28.81;MQ0=0;MQRankSum=-4.686;QD=1.62;ReadPosRankSum=0.311;SB=-1.667e+00 GT:AD:DP:GQ:PL 0/1:21,3:24:33:33,0,526 0/1:20,6:26:37:37,0,413 0/0:27,5:32:2:0,2,567 0/1:16,8:24:91:91,0,331 +chr11 68821585 . T G 91.20 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.584;DP=43;Dels=0.00;FS=5.193;HaplotypeScore=0.7401;MLEAC=2;MLEAF=0.250;MQ=32.49;MQ0=0;MQRankSum=-3.558;QD=3.65;ReadPosRankSum=-0.301;SB=-2.470e-01 GT:AD:DP:GQ:PL 0/0:7,0:7:18:0,18,228 0/0:11,0:11:18:0,18,232 0/1:11,6:17:99:118,0,286 0/1:5,3:8:14:14,0,118 +chr11 68846098 rs4930649 A G 3148.62 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.434;DB;DP=106;Dels=0.00;FS=3.768;HaplotypeScore=5.2785;MLEAC=7;MLEAF=0.875;MQ=31.72;MQ0=0;MQRankSum=2.823;QD=29.70;ReadPosRankSum=2.269;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:2,21:24:63:796,63,0 1/1:4,24:29:72:899,72,0 1/1:0,28:29:81:975,81,0 0/1:6,18:24:23:523,0,23 +chr11 68852636 . C A 34.68 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.122;DP=52;Dels=0.00;FS=2.537;HaplotypeScore=8.7510;MLEAC=3;MLEAF=0.500;MQ=17.66;MQ0=0;MQRankSum=1.342;QD=1.12;ReadPosRankSum=-0.366;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/0:9,1:10:6:0,6,58 1/1:9,4:13:6:50,6,0 0/1:15,3:18:24:25,0,24 +chr11 69514089 . C A 294.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.997;DP=119;Dels=0.00;FS=14.458;HaplotypeScore=10.7238;MLEAC=4;MLEAF=0.500;MQ=29.23;MQ0=0;MQRankSum=-0.158;QD=2.48;ReadPosRankSum=-1.006;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,4:28:74:74,0,454 0/1:17,4:21:71:71,0,335 0/1:29,6:35:89:89,0,535 0/1:28,7:35:99:103,0,420 +chr11 69950247 . A T 73.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.059;DP=84;Dels=0.02;FS=46.110;HaplotypeScore=15.9008;MLEAC=3;MLEAF=0.375;MQ=20.12;MQ0=0;MQRankSum=-0.359;QD=0.87;ReadPosRankSum=4.014;SB=24.66 GT:AD:DP:GQ:PL 0/1:14,5:20:87:87,0,151 0/1:14,4:18:13:13,0,85 0/1:16,4:22:10:10,0,121 0/1:18,4:22:2:2,0,226 +chr11 69957917 rs9666157 A G 897.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.039;DB;DP=155;Dels=0.00;FS=2.589;HaplotypeScore=4.8774;MLEAC=3;MLEAF=0.375;MQ=28.65;MQ0=0;MQRankSum=-2.610;QD=8.02;ReadPosRankSum=2.110;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,108,1242 0/1:17,17:34:99:321,0,367 0/1:25,19:44:99:384,0,503 0/1:22,12:34:99:236,0,396 +chr11 70194495 . G T 47.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.060;DP=208;Dels=0.02;FS=3.006;HaplotypeScore=13.2528;MLEAC=1;MLEAF=0.125;MQ=34.32;MQ0=0;MQRankSum=-2.237;QD=0.89;ReadPosRankSum=0.092;SB=-1.113e-02 GT:AD:DP:GQ:PL 0/0:52,4:57:59:0,59,1520 0/1:40,6:52:84:84,0,1080 0/0:46,2:51:53:0,53,1182 0/0:41,2:44:41:0,41,1077 +chr11 70279766 rs643301 C T 501.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.748;DB;DP=213;Dels=0.00;FS=2.458;HaplotypeScore=0.7263;MLEAC=1;MLEAF=0.125;MQ=42.62;MQ0=0;MQRankSum=-0.405;QD=10.46;ReadPosRankSum=0.685;SB=-2.110e+02 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,138,1919 0/1:32,16:48:99:538,0,1110 0/0:69,0:69:99:0,196,2680 0/0:48,0:48:99:0,141,1859 +chr11 70281007 rs7131282 T C 122 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.369;DB;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.2492;MLEAC=1;MLEAF=0.125;MQ=39.57;MQ0=0;MQRankSum=-1.282;QD=10.17;ReadPosRankSum=-0.932;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,5:12:99:158,0,221 0/0:13,0:13:39:0,39,489 0/0:7,0:7:21:0,21,297 0/0:11,0:11:33:0,33,431 +chr11 70333610 rs142622608 C A 64.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.385;DB;DP=53;Dels=0.02;FS=11.003;HaplotypeScore=2.7813;MLEAC=4;MLEAF=0.500;MQ=28.88;MQ0=0;MQRankSum=-0.444;QD=1.22;ReadPosRankSum=2.188;SB=-1.802e+00 GT:AD:DP:GQ:PL 0/1:10,1:11:1:1,0,235 0/1:5,3:8:59:75,0,59 0/1:12,1:13:6:6,0,186 0/1:17,3:20:22:22,0,183 +chr11 71146757 rs35946774 C G 54.21 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.723;DB;DP=54;Dels=0.02;FS=25.129;HaplotypeScore=8.5581;MLEAC=2;MLEAF=0.250;MQ=25.18;MQ0=0;MQRankSum=-0.833;QD=2.01;ReadPosRankSum=0.532;SB=0.030 GT:AD:DP:GQ:PL 0/0:5,0:5:9:0,9,97 0/0:19,2:21:10:0,10,379 0/1:9,2:11:31:31,0,175 0/1:9,6:16:64:64,0,159 +chr11 71150217 rs2852853 C T 324.82 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.791;DB;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=36.08;MQ0=0;MQRankSum=-1.739;QD=27.07;ReadPosRankSum=1.107;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:12:149,12,0 0/1:1,1:2:35:35,0,38 1/1:0,3:3:9:114,9,0 1/1:0,2:2:6:70,6,0 +chr11 71164471 rs12789751 G A 155.50 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.872;DB;DP=20;Dels=0.00;FS=6.803;HaplotypeScore=2.9070;MLEAC=7;MLEAF=0.875;MQ=22.37;MQ0=0;MQRankSum=2.259;QD=7.78;ReadPosRankSum=-0.323;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,1:5:25:25,0,31 1/1:2,1:3:3:28,3,0 1/1:4,2:6:6:72,6,0 1/1:4,2:6:6:72,6,0 +chr11 71169547 rs2276360 G C 5590.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=-1.223;DB;DP=222;Dels=0.00;FS=3.488;HaplotypeScore=0.2497;MLEAC=7;MLEAF=0.875;MQ=36.21;MQ0=0;MQRankSum=-0.698;QD=25.18;ReadPosRankSum=0.684;SB=-2.003e+03 GT:AD:DP:GQ:PL 1/1:4,58:62:99:2177,171,0 0/1:37,23:60:99:644,0,1103 1/1:13,40:53:99:1573,120,0 1/1:13,34:47:77:1196,77,0 +chr11 71175155 . A C 33.23 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.616;DP=38;Dels=0.00;FS=2.558;HaplotypeScore=0.8752;MLEAC=1;MLEAF=0.125;MQ=35.49;MQ0=0;MQRankSum=-1.875;QD=2.56;ReadPosRankSum=0.840;SB=0.231 GT:AD:DP:GQ:PL 0/0:6,0:6:9:0,9,115 0/0:9,0:9:12:0,12,155 0/0:10,0:10:30:0,30,399 0/1:10,3:13:69:69,0,306 +chr11 71192602 rs3814731 T C 37.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=19.49;MQ0=0;MQRankSum=0.736;QD=12.34;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:32,3,0 1/1:0,1:1:3:38,3,0 ./. ./. +chr11 71299455 rs7934017 T C 39.23 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.937;DB;DP=28;Dels=0.04;FS=10.792;HaplotypeScore=0.9159;MLEAC=4;MLEAF=1.00;MQ=10.97;MQ0=0;MQRankSum=1.754;QD=3.27;ReadPosRankSum=-0.550;SB=-2.047e+01 GT:AD:DP:GQ:PL 1/1:1,2:3:3:23,3,0 ./. 1/1:7,2:9:6:50,6,0 ./. +chr11 71373509 . T A 57.93 . AC=2;AF=0.333;AN=6;BaseQRankSum=-2.272;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=1.9398;MLEAC=2;MLEAF=0.333;MQ=7.37;MQ0=0;MQRankSum=1.611;QD=1.16;ReadPosRankSum=-2.690;SB=0.732 GT:AD:DP:GQ:PL ./. 0/0:44,0:44:3:0,3,24 1/1:46,4:50:9:97,9,0 0/0:37,0:37:6:0,6,71 +chr11 71614553 . T C 194.67 . AC=3;AF=0.500;AN=6;BaseQRankSum=-2.186;DP=116;Dels=0.01;FS=35.967;HaplotypeScore=3.4173;MLEAC=3;MLEAF=0.500;MQ=11.65;MQ0=0;MQRankSum=4.428;QD=2.12;ReadPosRankSum=0.145;SB=-1.107e-02 GT:AD:DP:GQ:PL 0/1:20,6:26:19:19,0,19 0/1:28,7:36:84:96,0,84 0/1:22,8:30:8:118,0,8 ./. +chr11 71650368 rs10736781 T C 360.72 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.999;DB;DP=24;Dels=0.00;FS=9.165;HaplotypeScore=1.1861;MLEAC=8;MLEAF=1.00;MQ=24.24;MQ0=0;MQRankSum=2.227;QD=15.03;ReadPosRankSum=-0.057;SB=-1.534e+02 GT:AD:DP:GQ:PL 1/1:0,6:6:12:151,12,0 1/1:1,5:6:9:81,9,0 1/1:1,6:7:6:60,6,0 1/1:2,3:5:9:107,9,0 +chr11 71712726 . A C 74.47 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.022;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.3820;MLEAC=4;MLEAF=0.500;MQ=30.64;MQ0=0;MQRankSum=0.503;QD=1.43;ReadPosRankSum=1.029;SB=-1.228e-02 GT:AD:DP:GQ:PL 0/1:12,1:13:6:6,0,200 0/1:16,2:18:39:39,0,86 0/1:9,2:11:53:53,0,80 0/1:9,1:10:18:18,0,128 +chr11 71729892 . T G 111.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.754;DP=155;Dels=0.04;FS=78.708;HaplotypeScore=25.2501;MLEAC=3;MLEAF=0.375;MQ=32.08;MQ0=0;MQRankSum=-5.199;QD=0.92;ReadPosRankSum=1.796;SB=0.703 GT:AD:DP:GQ:PL 0/0:28,4:32:18:0,18,776 0/1:29,7:36:34:34,0,735 0/1:38,6:44:55:55,0,905 0/1:30,7:37:66:66,0,564 +chr11 71735275 . GC G 203.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.468;DP=92;FS=2.587;HaplotypeScore=22.8642;MLEAC=3;MLEAF=0.375;MQ=26.76;MQ0=0;MQRankSum=0.141;QD=2.83;ReadPosRankSum=-2.061;SB=6.722e-03 GT:AD:DP:GQ:PL 0/0:19,1:15:28:0,28,475 0/1:17,3:16:62:62,0,392 0/1:22,3:15:91:91,0,278 0/1:19,3:11:99:103,0,304 +chr11 71800208 . C G 31 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.130;DP=140;Dels=0.00;FS=5.365;HaplotypeScore=5.0346;MLEAC=1;MLEAF=0.125;MQ=33.18;MQ0=0;MQRankSum=-3.926;QD=0.94;ReadPosRankSum=2.963;SB=-1.193e+01 GT:AD:DP:GQ:PL 0/1:27,6:33:67:67,0,560 0/0:33,3:37:31:0,31,727 0/0:32,2:34:30:0,30,658 0/0:34,2:36:32:0,32,809 +chr11 71808903 . T G 253.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.891;DP=308;Dels=0.00;FS=137.496;HaplotypeScore=8.3624;MLEAC=4;MLEAF=0.500;MQ=33.77;MQ0=0;MQRankSum=-0.871;QD=0.82;ReadPosRankSum=-0.002;SB=-4.730e-02 GT:AD:DP:GQ:PL 0/1:76,4:80:20:20,0,1095 0/1:66,7:74:99:105,0,1146 0/1:78,6:84:99:108,0,1320 0/1:65,5:70:63:63,0,986 +chr11 71850755 . C A 207.28 . AC=5;AF=0.625;AN=8;BaseQRankSum=-5.529;DP=170;Dels=0.01;FS=183.280;HaplotypeScore=11.4078;MLEAC=5;MLEAF=0.625;MQ=15.94;MQ0=0;MQRankSum=3.984;QD=1.22;ReadPosRankSum=0.501;SB=0.637 GT:AD:DP:GQ:PL 0/1:33,6:39:23:134,0,23 0/1:37,6:44:5:5,0,126 0/1:42,3:45:35:35,0,72 1/1:32,8:41:9:77,9,0 +chr11 71944495 . A T 84.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.001;DP=89;Dels=0.02;FS=36.206;HaplotypeScore=11.2287;MLEAC=3;MLEAF=0.375;MQ=25.43;MQ0=0;MQRankSum=0.880;QD=1.32;ReadPosRankSum=-1.208;SB=0.296 GT:AD:DP:GQ:PL 0/1:12,3:15:60:60,0,65 0/1:21,2:23:12:12,0,395 0/1:22,3:25:55:55,0,359 0/0:24,0:24:30:0,30,296 +chr11 72290237 rs192957389 G C 143.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.970;DB;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8613;MLEAC=3;MLEAF=0.375;MQ=28.56;MQ0=0;MQRankSum=-3.940;QD=2.00;ReadPosRankSum=1.352;SB=-9.088e-02 GT:AD:DP:GQ:PL 0/1:22,6:28:99:103,0,277 0/0:18,2:20:21:0,21,218 0/1:18,5:23:68:68,0,322 0/1:19,2:21:16:16,0,270 +chr11 72292353 rs57803658 G GA 174.63 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.751;DB;DP=32;FS=0.000;HaplotypeScore=10.7011;MLEAC=7;MLEAF=0.875;MQ=15.90;MQ0=0;MQRankSum=0.751;QD=5.46;RPA=1,2;RU=A;ReadPosRankSum=0.751;SB=3.30;STR GT:AD:DP:GQ:PL 1/1:5,1:3:2:7,2,0 1/1:7,4:3:8:77,8,0 1/1:1,4:3:9:112,9,0 0/1:7,1:2:8:28,0,8 +chr11 72300205 . A T 89.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.104;DP=56;Dels=0.02;FS=10.360;HaplotypeScore=3.7515;MLEAC=4;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=-1.467;QD=1.60;ReadPosRankSum=-0.885;SB=-3.523e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:39:39,0,156 0/1:16,2:18:23:23,0,301 0/1:14,2:16:1:1,0,277 0/1:7,4:11:67:67,0,126 +chr11 72398721 . G A 47.10 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.437;DP=215;Dels=0.00;FS=31.120;HaplotypeScore=8.5037;MLEAC=1;MLEAF=0.125;MQ=32.50;MQ0=0;MQRankSum=-3.207;QD=1.07;ReadPosRankSum=-1.523;SB=-7.185e+00 GT:AD:DP:GQ:PL 0/0:51,2:53:51:0,51,1230 0/0:53,4:57:11:0,11,1272 0/0:56,4:60:23:0,23,1405 0/1:38,6:44:83:83,0,728 +chr11 72399451 rs7944294 A G 122.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.414;DB;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.4780;MLEAC=1;MLEAF=0.125;MQ=38.57;MQ0=0;MQRankSum=-1.060;QD=12.30;ReadPosRankSum=0.957;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:54:0,54,674 0/1:5,5:10:99:159,0,178 0/0:18,0:18:48:0,48,661 0/0:16,0:17:36:0,36,466 +chr11 72404480 . T G 37.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.304;DP=63;Dels=0.00;FS=23.254;HaplotypeScore=4.6661;MLEAC=2;MLEAF=0.250;MQ=30.05;MQ0=0;MQRankSum=-1.776;QD=1.02;ReadPosRankSum=0.087;SB=1.35 GT:AD:DP:GQ:PL 0/0:12,0:12:24:0,24,270 0/1:12,3:15:33:33,0,187 0/1:19,3:22:46:46,0,373 0/0:12,2:14:15:0,15,192 +chr11 72535248 . A T 81.03 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.162;DP=63;Dels=0.00;FS=6.488;HaplotypeScore=4.6070;MLEAC=4;MLEAF=0.500;MQ=30.82;MQ0=0;MQRankSum=-2.480;QD=1.29;ReadPosRankSum=1.953;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,3:24:26:26,0,375 0/1:7,4:11:56:56,0,98 0/1:9,1:10:9:9,0,107 0/1:15,3:18:32:32,0,242 +chr11 73008403 . A G 55.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.688;DP=90;Dels=0.00;FS=35.846;HaplotypeScore=4.7825;MLEAC=2;MLEAF=0.250;MQ=24.45;MQ0=0;MQRankSum=0.145;QD=1.32;ReadPosRankSum=-0.318;SB=-3.503e+00 GT:AD:DP:GQ:PL 0/1:23,3:26:29:29,0,408 0/0:16,0:16:24:0,24,245 0/0:31,1:32:40:0,40,585 0/1:13,3:16:68:68,0,129 +chr11 73020825 . T C 38.56 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.895;DP=79;Dels=0.03;FS=19.204;HaplotypeScore=5.1163;MLEAC=1;MLEAF=0.125;MQ=30.30;MQ0=0;MQRankSum=-1.687;QD=1.54;ReadPosRankSum=-1.916;SB=-8.271e+00 GT:AD:DP:GQ:PL 0/0:19,1:20:2:0,2,389 0/1:20,4:24:73:73,0,366 0/0:18,1:19:42:0,42,510 0/0:13,1:14:2:0,2,374 +chr11 73021901 . C A 105.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.713;DP=80;Dels=0.00;FS=45.236;HaplotypeScore=2.8941;MLEAC=4;MLEAF=0.500;MQ=34.45;MQ0=0;MQRankSum=-1.910;QD=1.32;ReadPosRankSum=-0.320;SB=-1.022e+00 GT:AD:DP:GQ:PL 0/1:20,4:24:67:67,0,430 0/1:15,1:16:5:5,0,366 0/1:12,2:14:35:35,0,284 0/1:22,4:26:40:40,0,616 +chr11 73022503 . T A 68.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.802;DP=89;Dels=0.01;FS=60.111;HaplotypeScore=12.0072;MLEAC=2;MLEAF=0.250;MQ=26.16;MQ0=0;MQRankSum=-2.106;QD=1.49;ReadPosRankSum=3.488;SB=-1.066e+00 GT:AD:DP:GQ:PL 0/1:13,5:18:84:84,0,174 0/0:17,2:19:30:0,30,342 0/0:23,1:24:23:0,23,511 0/1:24,3:27:26:26,0,328 +chr11 73689084 . C T 31.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.637;DP=99;Dels=0.00;FS=9.709;HaplotypeScore=6.2298;MLEAC=2;MLEAF=0.250;MQ=31.81;MQ0=0;MQRankSum=-3.539;QD=0.78;ReadPosRankSum=0.894;SB=-7.386e-02 GT:AD:DP:GQ:PL 0/0:30,0:30:60:0,60,718 0/1:16,3:19:16:16,0,327 0/0:26,2:28:23:0,23,753 0/1:18,4:22:57:57,0,383 +chr11 73715666 rs2734828 G A 750.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.561;DB;DP=78;Dels=0.00;FS=2.756;HaplotypeScore=1.5447;MLEAC=3;MLEAF=0.375;MQ=32.74;MQ0=0;MQRankSum=-1.067;QD=13.41;ReadPosRankSum=0.090;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,8:17:99:249,0,216 0/0:22,0:22:48:0,48,577 0/1:12,9:21:99:290,0,368 0/1:8,10:18:99:255,0,192 +chr11 73833957 rs78640216 C A 345.35 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.585;DB;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.4941;MLEAC=5;MLEAF=0.625;MQ=30.72;MQ0=0;MQRankSum=-3.550;QD=6.91;ReadPosRankSum=-0.977;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,5:18:89:89,0,344 0/1:14,3:17:54:54,0,421 0/1:3,9:13:25:193,0,25 1/1:0,2:2:6:53,6,0 +chr11 73914872 . C G 353.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.031;DP=96;Dels=0.02;FS=5.755;HaplotypeScore=13.2326;MLEAC=3;MLEAF=0.375;MQ=27.09;MQ0=0;MQRankSum=0.335;QD=4.32;ReadPosRankSum=2.944;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,6:26:87:145,0,87 0/1:24,5:30:99:102,0,136 0/1:19,6:25:99:149,0,134 0/0:12,0:13:6:0,6,52 +chr11 74168411 rs2270676 A G 1291.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.635;DB;DP=120;Dels=0.00;FS=19.360;HaplotypeScore=1.7268;MLEAC=3;MLEAF=0.375;MQ=35.44;MQ0=0;MQRankSum=-0.876;QD=15.20;ReadPosRankSum=0.204;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/0:35,0:35:93:0,93,1171 0/1:16,12:28:99:356,0,426 0/1:18,15:33:99:446,0,522 0/1:9,15:24:99:533,0,164 +chr11 74555056 rs3814726 C T 617.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.617;DB;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.8105;MLEAC=3;MLEAF=0.375;MQ=34.35;MQ0=0;MQRankSum=-0.575;QD=5.57;ReadPosRankSum=-0.319;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/0:38,0:38:72:0,72,928 0/1:28,10:38:99:332,0,548 0/1:40,9:49:99:232,0,808 0/1:20,4:24:97:97,0,457 +chr11 74563077 rs2304683 G A 2928.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.319;DB;DP=373;Dels=0.00;FS=12.627;HaplotypeScore=1.4940;MLEAC=3;MLEAF=0.375;MQ=38.26;MQ0=0;MQRankSum=-3.750;QD=10.93;ReadPosRankSum=0.713;SB=-1.340e+03 GT:AD:DP:GQ:PL 0/0:105,0:105:99:0,316,4093 0/1:55,34:89:99:878,0,1916 0/1:56,38:94:99:1196,0,1895 0/1:55,30:85:99:898,0,1911 +chr11 74914150 . C G 45.33 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.447;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9922;MLEAC=2;MLEAF=0.333;MQ=26.18;MQ0=0;MQRankSum=0.633;QD=5.04;ReadPosRankSum=2.072;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,3:6:14:60,0,14 0/0:5,0:5:6:0,6,59 ./. 0/1:2,1:3:23:23,0,36 +chr11 74914293 . G T 87.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.289;DP=28;Dels=0.00;FS=17.433;HaplotypeScore=3.5326;MLEAC=3;MLEAF=0.375;MQ=24.11;MQ0=0;MQRankSum=-0.124;QD=3.82;ReadPosRankSum=2.436;SB=2.40 GT:AD:DP:GQ:PL 0/1:4,3:7:31:65,0,31 0/1:3,6:9:15:46,0,15 0/1:5,2:7:18:18,0,31 0/0:5,0:5:3:0,3,39 +chr11 75298222 . A T 36 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.866;DP=164;Dels=0.00;FS=60.145;HaplotypeScore=10.9387;MLEAC=1;MLEAF=0.125;MQ=28.06;MQ0=0;MQRankSum=-0.098;QD=1.09;ReadPosRankSum=3.074;SB=-5.882e+00 GT:AD:DP:GQ:PL 0/0:32,3:35:30:0,30,835 0/0:47,1:48:50:0,50,844 0/0:46,2:48:28:0,28,957 0/1:28,5:33:72:72,0,497 +chr11 75299137 . A G 525.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.316;DP=260;Dels=0.00;FS=199.206;HaplotypeScore=7.3005;MLEAC=4;MLEAF=0.500;MQ=32.52;MQ0=0;MQRankSum=-7.617;QD=2.02;ReadPosRankSum=4.268;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:48,15:63:99:186,0,1239 0/1:52,15:67:99:101,0,1407 0/1:56,20:76:99:190,0,1513 0/1:43,10:53:91:91,0,1093 +chr11 75898146 . C G 65.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.631;DP=98;Dels=0.00;FS=13.836;HaplotypeScore=13.7109;MLEAC=2;MLEAF=0.250;MQ=28.07;MQ0=0;MQRankSum=-0.542;QD=1.46;ReadPosRankSum=0.011;SB=-1.112e+00 GT:AD:DP:GQ:PL 0/1:17,3:20:28:28,0,321 0/0:21,1:22:18:0,18,209 0/0:30,1:31:4:0,4,365 0/1:19,3:25:78:78,0,166 +chr11 76063275 . C G 264.39 . AC=8;AF=1.00;AN=8;BaseQRankSum=-1.132;DP=53;Dels=0.02;FS=42.044;HaplotypeScore=6.5333;MLEAC=7;MLEAF=0.875;MQ=15.59;MQ0=0;MQRankSum=2.615;QD=4.99;ReadPosRankSum=3.669;SB=15.93 GT:AD:DP:GQ:PL 1/1:3,9:12:18:167,18,0 1/1:13,5:18:6:51,6,0 1/1:9,8:18:6:61,6,0 1/1:1,3:4:3:23,3,0 +chr11 76831697 . G A 35.67 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.754;DP=23;Dels=0.04;FS=0.000;HaplotypeScore=4.6497;MLEAC=3;MLEAF=0.500;MQ=22.49;MQ0=0;MQRankSum=0.000;QD=5.10;ReadPosRankSum=1.754;SB=2.33 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,42 0/0:4,0:4:3:0,3,32 1/1:4,3:7:9:74,9,0 ./. +chr11 76871968 . T G 33.44 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.597;DP=15;Dels=0.00;FS=7.123;HaplotypeScore=1.3188;MLEAC=3;MLEAF=0.375;MQ=18.67;MQ0=0;MQRankSum=0.278;QD=4.18;ReadPosRankSum=-0.597;SB=15.94 GT:AD:DP:GQ:PL 0/1:2,1:3:16:16,0,34 1/1:1,1:2:3:33,3,0 0/0:4,1:7:3:0,3,28 0/1:2,1:3:26:26,0,29 +chr11 76893280 rs57741157 A AG 1621.95 . AC=8;AF=1.00;AN=8;BaseQRankSum=-1.733;DB;DP=52;FS=0.000;HaplotypeScore=13.1371;MLEAC=8;MLEAF=1.00;MQ=28.11;MQ0=0;MQRankSum=0.718;QD=31.19;RPA=1,2;RU=G;ReadPosRankSum=-0.380;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:6,8:11:30:407,30,0 1/1:4,7:10:27:382,27,0 1/1:4,8:12:30:424,30,0 1/1:5,9:12:32:457,32,0 +chr11 77775466 rs545869 C G 433.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.378;DB;DP=36;Dels=0.03;FS=11.220;HaplotypeScore=2.9381;MLEAC=4;MLEAF=0.500;MQ=27.68;MQ0=0;MQRankSum=-0.302;QD=14.96;ReadPosRankSum=-0.604;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,1:7:18:0,18,239 1/1:4,11:15:30:314,30,0 0/1:7,1:8:30:30,0,76 0/1:1,4:5:24:138,0,24 +chr11 77832076 rs518624 T A 3534.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.277;DB;DP=115;Dels=0.00;FS=13.847;HaplotypeScore=0.8850;MLEAC=8;MLEAF=1.00;MQ=35.73;MQ0=0;MQRankSum=0.807;QD=30.73;ReadPosRankSum=1.370;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:6,22:28:66:849,66,0 1/1:3,31:34:73:1231,73,0 1/1:8,35:44:64:1271,64,0 1/1:4,5:9:15:183,15,0 +chr11 78152132 . C G 132.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.526;DP=189;Dels=0.02;FS=30.069;HaplotypeScore=10.7013;MLEAC=3;MLEAF=0.375;MQ=33.77;MQ0=0;MQRankSum=-0.430;QD=0.95;ReadPosRankSum=0.607;SB=0.091 GT:AD:DP:GQ:PL 0/1:47,4:52:51:51,0,567 0/0:46,2:49:50:0,50,937 0/1:54,6:61:65:65,0,881 0/1:21,3:24:60:60,0,357 +chr11 78380126 . C A 67.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.081;DP=117;Dels=0.03;FS=41.020;HaplotypeScore=7.9380;MLEAC=2;MLEAF=0.250;MQ=33.18;MQ0=0;MQRankSum=-4.062;QD=1.04;ReadPosRankSum=1.595;SB=0.511 GT:AD:DP:GQ:PL 0/1:28,7:35:80:80,0,764 0/0:25,0:25:63:0,63,786 0/1:23,4:28:29:29,0,514 0/0:23,3:26:31:0,31,652 +chr11 78380591 . C A 66.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.340;DP=252;Dels=0.00;FS=86.606;HaplotypeScore=2.9542;MLEAC=2;MLEAF=0.250;MQ=38.08;MQ0=0;MQRankSum=-5.388;QD=0.52;ReadPosRankSum=1.199;SB=-9.436e-01 GT:AD:DP:GQ:PL 0/0:56,3:59:26:0,26,1465 0/1:57,7:64:43:43,0,1733 0/0:62,2:64:86:0,86,1768 0/1:58,7:65:65:65,0,1568 +chr11 78437168 . C G 1394.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.739;DP=363;Dels=0.00;FS=250.343;HaplotypeScore=29.5432;MLEAC=4;MLEAF=0.500;MQ=32.27;MQ0=0;MQRankSum=-3.315;QD=3.84;ReadPosRankSum=1.226;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:73,14:88:99:278,0,1551 0/1:72,21:93:99:441,0,1432 0/1:98,16:114:99:261,0,2166 0/1:47,18:67:99:457,0,755 +chr11 78443586 rs17826919 G A 2419.86 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.567;DB;DP=105;Dels=0.00;FS=4.901;HaplotypeScore=4.5135;MLEAC=6;MLEAF=0.750;MQ=33.55;MQ0=0;MQRankSum=-0.558;QD=23.05;ReadPosRankSum=1.365;SB=-8.341e+02 GT:AD:DP:GQ:PL 0/1:4,15:19:19:531,0,19 0/1:18,11:29:99:301,0,520 1/1:5,21:26:63:747,63,0 1/1:5,26:31:75:887,75,0 +chr11 78600929 . T G 94.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.441;DP=109;Dels=0.00;FS=140.973;HaplotypeScore=9.7529;MLEAC=4;MLEAF=0.500;MQ=30.35;MQ0=0;MQRankSum=-5.385;QD=0.87;ReadPosRankSum=0.893;SB=-3.599e-02 GT:AD:DP:GQ:PL 0/1:19,5:24:13:13,0,520 0/1:25,6:31:34:34,0,641 0/1:22,5:27:37:37,0,585 0/1:18,9:27:53:53,0,434 +chr11 78780789 . C A 33.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.516;DP=25;Dels=0.00;FS=6.990;HaplotypeScore=2.8125;MLEAC=2;MLEAF=0.250;MQ=23.55;MQ0=0;MQRankSum=0.361;QD=2.76;ReadPosRankSum=0.217;SB=1.16 GT:AD:DP:GQ:PL 0/0:5,0:5:9:0,9,106 1/1:4,1:5:3:33,3,0 0/1:5,2:7:42:42,0,68 0/0:7,0:8:6:0,6,70 +chr11 82444634 . C G 286.61 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.465;DP=33;Dels=0.00;FS=15.836;HaplotypeScore=7.1383;MLEAC=5;MLEAF=0.625;MQ=23.87;MQ0=0;MQRankSum=1.998;QD=8.69;ReadPosRankSum=1.834;SB=0.101 GT:AD:DP:GQ:PL 0/1:6,2:9:41:41,0,46 1/1:4,3:7:9:85,9,0 0/1:5,5:10:21:126,0,21 0/1:3,4:7:20:79,0,20 +chr11 82533628 rs586607 T C 803.10 . AC=7;AF=0.875;AN=8;BaseQRankSum=5.000;DB;DP=59;Dels=0.00;FS=19.072;HaplotypeScore=3.3075;MLEAC=7;MLEAF=0.875;MQ=21.64;MQ0=0;MQRankSum=4.633;QD=13.61;ReadPosRankSum=-2.083;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:9,10:19:11:233,0,11 1/1:2,11:13:33:343,33,0 1/1:7,11:18:9:247,9,0 1/1:5,4:9:3:22,3,0 +chr11 82920771 . T G 162.12 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.692;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=6.6616;MLEAC=5;MLEAF=0.625;MQ=18.23;MQ0=0;MQRankSum=3.163;QD=2.95;ReadPosRankSum=1.192;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:36:48,0,36 0/1:13,1:14:19:19,0,83 1/1:11,4:15:12:105,12,0 0/1:12,2:14:35:35,0,51 +chr11 82952108 rs625102 T C 251.62 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.600;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=0.750;MQ=33.54;MQ0=0;MQRankSum=-3.067;QD=27.96;ReadPosRankSum=-0.400;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:15:0,15,205 1/1:0,3:3:9:81,9,0 1/1:0,4:4:12:147,12,0 1/1:0,2:2:6:73,6,0 +chr11 83810113 rs3750917 T G 2879.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.648;DB;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.2498;MLEAC=8;MLEAF=1.00;MQ=33.65;MQ0=0;MQRankSum=-1.267;QD=33.88;ReadPosRankSum=1.605;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:48:592,48,0 1/1:1,27:28:81:969,81,0 1/1:2,25:27:44:912,44,0 1/1:1,13:14:39:446,39,0 +chr11 85396120 . T A 105.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.622;DP=118;Dels=0.00;FS=68.492;HaplotypeScore=6.0967;MLEAC=3;MLEAF=0.375;MQ=31.20;MQ0=0;MQRankSum=-1.327;QD=1.18;ReadPosRankSum=0.527;SB=1.58 GT:AD:DP:GQ:PL 0/1:24,5:29:93:93,0,375 0/0:27,1:29:39:0,39,440 0/1:37,4:41:44:44,0,631 0/1:17,2:19:11:11,0,201 +chr11 85411730 . C G 75.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.741;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.2892;MLEAC=3;MLEAF=0.375;MQ=32.69;MQ0=0;MQRankSum=-2.562;QD=1.46;ReadPosRankSum=1.118;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:29:29,0,322 0/1:8,2:10:48:48,0,129 0/1:19,3:22:42:42,0,319 0/0:10,0:10:15:0,15,216 +chr11 85425472 . G C 89.89 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.115;DP=106;Dels=0.01;FS=7.082;HaplotypeScore=2.1303;MLEAC=2;MLEAF=0.250;MQ=29.84;MQ0=0;MQRankSum=-1.083;QD=1.34;ReadPosRankSum=-1.083;SB=0.924 GT:AD:DP:GQ:PL 0/0:28,1:29:13:0,13,507 0/1:28,5:33:99:101,0,357 0/1:30,3:33:30:30,0,394 0/0:9,1:10:12:0,12,137 +chr11 85456780 . C G 72.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.824;DP=166;Dels=0.00;FS=35.827;HaplotypeScore=0.7228;MLEAC=2;MLEAF=0.250;MQ=30.18;MQ0=0;MQRankSum=-2.852;QD=0.99;ReadPosRankSum=2.656;SB=1.54 GT:AD:DP:GQ:PL 0/1:40,7:47:51:51,0,1021 0/0:43,2:45:29:0,29,745 0/0:46,2:48:69:0,69,1096 0/1:20,6:26:63:63,0,545 +chr11 85576113 rs112846596 C CT 944.95 . AC=1;AF=0.125;AN=8;BaseQRankSum=7.563;DB;DP=239;FS=0.000;HaplotypeScore=68.3606;MLEAC=1;MLEAF=0.125;MQ=36.74;MQ0=0;MQRankSum=-6.420;QD=13.69;RPA=3,4;RU=T;ReadPosRankSum=1.389;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:73,0:69:99:0,199,2602 0/1:37,30:68:99:990,0,1126 0/0:70,0:74:99:0,190,2484 0/0:22,0:22:57:0,57,748 +chr11 85733476 . C A 59.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.678;DP=130;Dels=0.00;FS=7.493;HaplotypeScore=2.5972;MLEAC=1;MLEAF=0.125;MQ=36.39;MQ0=0;MQRankSum=-1.441;QD=5.45;ReadPosRankSum=-0.480;SB=0.227 GT:AD:DP:GQ:PL 0/0:31,1:32:28:0,28,754 0/0:43,0:44:99:0,102,1270 0/0:42,1:43:93:0,93,1099 0/1:7,4:11:96:96,0,174 +chr11 86208897 rs609848 A G 2176.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.851;DB;DP=67;Dels=0.00;FS=10.145;HaplotypeScore=0.7298;MLEAC=8;MLEAF=1.00;MQ=36.01;MQ0=0;MQRankSum=2.885;QD=32.49;ReadPosRankSum=-0.917;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:48:625,48,0 1/1:2,14:16:42:542,42,0 1/1:2,14:17:42:510,42,0 1/1:4,14:18:42:539,42,0 +chr11 86868278 rs633629 A T 1402.78 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.508;DB;DP=91;Dels=0.00;FS=3.046;HaplotypeScore=0.2499;MLEAC=4;MLEAF=0.500;MQ=37.29;MQ0=0;MQRankSum=-2.157;QD=22.27;ReadPosRankSum=0.612;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,25:28:7:872,7,0 0/0:28,0:28:81:0,81,1121 0/1:9,12:21:99:426,0,228 0/1:9,5:14:99:151,0,255 +chr11 86868347 rs556139 C T 1963.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.995;DB;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=0.9777;MLEAC=5;MLEAF=0.625;MQ=28.51;MQ0=0;MQRankSum=-0.335;QD=13.36;ReadPosRankSum=2.121;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,38:39:96:1101,96,0 0/1:27,21:48:99:448,0,532 0/1:22,18:40:99:331,0,371 0/1:11,8:19:99:129,0,265 +chr11 88059466 . T C 160.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.174;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=8.0340;MLEAC=4;MLEAF=0.500;MQ=18.34;MQ0=0;MQRankSum=2.554;QD=1.91;ReadPosRankSum=-2.819;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,1:14:14:14,0,47 0/1:15,4:19:53:53,0,97 0/1:23,3:26:55:55,0,65 0/1:18,6:24:58:81,0,58 +chr11 89018044 . A G 33.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.621;DP=169;Dels=0.00;FS=24.566;HaplotypeScore=0.4930;MLEAC=4;MLEAF=0.500;MQ=11.43;MQ0=0;MQRankSum=1.994;QD=0.20;ReadPosRankSum=0.701;SB=-9.054e-01 GT:AD:DP:GQ:PL 0/1:44,1:45:11:11,0,163 0/1:48,3:51:8:8,0,101 0/1:46,1:47:12:12,0,116 0/1:24,2:26:44:44,0,51 +chr11 89392961 . T G 79.07 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.887;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.2467;MLEAC=5;MLEAF=0.625;MQ=12.49;MQ0=0;MQRankSum=1.918;QD=2.26;ReadPosRankSum=2.495;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:9,4:13:6:70,6,0 0/1:14,1:15:20:20,0,24 0/0:10,1:11:3:0,3,33 1/1:6,1:7:3:32,3,0 +chr11 89706780 . A G 58.36 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.231;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5189;MLEAC=5;MLEAF=0.833;MQ=17.34;MQ0=0;MQRankSum=1.231;QD=4.17;ReadPosRankSum=-1.231;SB=-1.236e+01 GT:AD:DP:GQ:PL ./. 1/1:7,1:8:3:33,3,0 1/1:1,1:3:3:29,3,0 1/1:2,1:3:3:31,3,0 +chr11 89714703 . A G 159.85 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.054;DP=17;Dels=0.00;FS=8.195;HaplotypeScore=0.3328;MLEAC=6;MLEAF=1.00;MQ=20.46;MQ0=0;MQRankSum=2.054;QD=11.42;ReadPosRankSum=-0.573;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,3:6:9:104,9,0 1/1:5,2:7:6:68,6,0 ./. 1/1:0,1:1:3:24,3,0 +chr11 89867920 . A G 211.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.097;DP=81;Dels=0.00;FS=7.391;HaplotypeScore=4.1949;MLEAC=4;MLEAF=0.500;MQ=33.50;MQ0=0;MQRankSum=1.106;QD=2.61;ReadPosRankSum=-1.941;SB=-8.269e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:14:14,0,175 0/1:21,4:25:80:80,0,207 0/1:18,3:21:34:34,0,289 0/1:15,5:20:99:126,0,146 +chr11 91683122 . T A 100.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.635;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7472;MLEAC=2;MLEAF=0.250;MQ=37.68;MQ0=0;MQRankSum=-2.549;QD=2.35;ReadPosRankSum=-1.330;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,0:21:63:0,63,824 0/1:18,2:20:21:21,0,541 0/1:18,5:23:99:121,0,516 0/0:17,1:18:10:0,10,476 +chr11 92087240 . A C 39.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.715;DP=258;Dels=0.00;FS=44.359;HaplotypeScore=6.8975;MLEAC=1;MLEAF=0.125;MQ=35.06;MQ0=0;MQRankSum=-3.792;QD=0.53;ReadPosRankSum=1.175;SB=-1.464e+00 GT:AD:DP:GQ:PL 0/0:72,4:76:98:0,98,1992 0/1:67,8:75:76:76,0,1709 0/0:75,4:79:96:0,96,2242 0/0:26,1:27:27:0,27,692 +chr11 92532458 . T G 456.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.079;DP=367;Dels=0.00;FS=241.826;HaplotypeScore=1.7143;MLEAC=4;MLEAF=0.500;MQ=42.41;MQ0=0;MQRankSum=-0.960;QD=1.24;ReadPosRankSum=0.198;SB=-5.506e-01 GT:AD:DP:GQ:PL 0/1:77,13:91:99:205,0,2341 0/1:92,7:99:8:8,0,3000 0/1:94,10:104:72:72,0,3021 0/1:63,10:73:99:213,0,1711 +chr11 92534114 . T G 166.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.443;DP=199;Dels=0.02;FS=80.710;HaplotypeScore=14.6897;MLEAC=3;MLEAF=0.375;MQ=32.59;MQ0=0;MQRankSum=-1.580;QD=1.12;ReadPosRankSum=2.661;SB=0.652 GT:AD:DP:GQ:PL 0/1:45,5:52:68:68,0,854 0/1:44,3:49:17:17,0,629 0/0:46,2:49:37:0,37,1048 0/1:37,8:46:99:125,0,740 +chr11 93490682 rs604414 T A 4198.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.708;DB;DP=189;Dels=0.01;FS=21.492;HaplotypeScore=3.0337;MLEAC=8;MLEAF=1.00;MQ=28.04;MQ0=0;MQRankSum=1.708;QD=22.21;ReadPosRankSum=-1.413;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:12,40:52:99:1265,114,0 1/1:18,47:65:99:1425,126,0 1/1:13,34:47:90:995,90,0 1/1:5,19:24:51:513,51,0 +chr11 93526947 rs140935979 G T 31.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.610;DB;DP=116;Dels=0.03;FS=15.800;HaplotypeScore=15.8266;MLEAC=3;MLEAF=0.375;MQ=30.14;MQ0=0;MQRankSum=-2.411;QD=0.38;ReadPosRankSum=0.809;SB=-6.751e-01 GT:AD:DP:GQ:PL 0/1:27,2:29:17:17,0,344 0/0:33,0:33:57:0,57,675 0/1:35,5:40:48:48,0,514 0/1:9,1:10:9:9,0,118 +chr11 93554189 . A C 32.75 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.630;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.6463;MLEAC=2;MLEAF=0.250;MQ=40.07;MQ0=0;MQRankSum=-1.951;QD=1.31;ReadPosRankSum=0.508;SB=-2.646e-01 GT:AD:DP:GQ:PL 0/1:10,3:13:59:59,0,237 0/0:12,0:12:30:0,30,402 0/0:7,0:7:6:0,6,69 0/1:11,1:12:14:14,0,263 +chr11 93922134 rs10831169 A T 186.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.733;DB;DP=65;Dels=0.02;FS=14.494;HaplotypeScore=0.9349;MLEAC=3;MLEAF=0.375;MQ=19.95;MQ0=0;MQRankSum=-0.808;QD=5.83;ReadPosRankSum=-0.319;SB=-5.786e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:122,9,0 0/0:9,9:18:3:0,3,42 0/1:11,8:19:99:109,0,178 0/0:12,2:14:9:0,9,93 +chr11 94038828 . T G 135.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.342;DP=159;Dels=0.01;FS=19.404;HaplotypeScore=7.9620;MLEAC=3;MLEAF=0.375;MQ=28.44;MQ0=0;MQRankSum=-0.641;QD=1.66;ReadPosRankSum=-1.995;SB=-3.378e+00 GT:AD:DP:GQ:PL 0/0:29,2:31:0:0,0,516 0/1:35,6:41:64:64,0,606 0/0:44,2:46:22:0,22,896 0/1:34,6:40:99:111,0,579 +chr11 94113288 rs3740867 C G 507.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.149;DB;DP=87;Dels=0.00;FS=13.509;HaplotypeScore=1.1306;MLEAC=3;MLEAF=0.375;MQ=30.40;MQ0=0;MQRankSum=-1.549;QD=8.61;ReadPosRankSum=-0.150;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:11,6:17:99:145,0,294 0/0:28,0:28:63:0,63,740 0/1:13,6:19:99:144,0,359 0/1:13,10:23:99:262,0,124 +chr11 94225883 . G T 63.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.171;DP=44;Dels=0.05;FS=0.000;HaplotypeScore=11.5863;MLEAC=3;MLEAF=0.375;MQ=19.90;MQ0=0;MQRankSum=0.024;QD=1.68;ReadPosRankSum=0.122;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:13:34:34,0,135 0/1:9,1:11:23:23,0,61 0/1:8,3:12:21:48,0,21 0/0:5,1:6:3:0,3,43 +chr11 94349612 . G T 60.68 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.455;DP=51;Dels=0.04;FS=2.876;HaplotypeScore=6.6464;MLEAC=2;MLEAF=0.333;MQ=26.09;MQ0=0;MQRankSum=-1.563;QD=1.73;ReadPosRankSum=1.671;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,2:14:12:0,12,155 0/1:17,2:19:9:9,0,177 0/1:10,5:15:65:89,0,65 ./. +chr11 94906396 . T C 70.60 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.421;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5203;MLEAC=3;MLEAF=0.375;MQ=25.71;MQ0=0;MQRankSum=-2.700;QD=1.31;ReadPosRankSum=3.480;SB=-1.142e+00 GT:AD:DP:GQ:PL 0/1:17,2:19:2:2,0,173 0/1:12,5:17:68:70,0,68 0/1:14,4:18:38:38,0,141 0/0:5,0:5:6:0,6,65 +chr11 95512371 . T G 52.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.987;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=1.0381;MLEAC=2;MLEAF=0.250;MQ=35.57;MQ0=0;MQRankSum=-0.167;QD=0.35;ReadPosRankSum=2.880;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:65,4:69:28:28,0,865 0/1:76,6:82:66:66,0,1326 0/0:61,2:63:52:0,52,1079 0/0:13,0:13:21:0,21,240 +chr11 95532650 . A T 65.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.915;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.6115;MLEAC=4;MLEAF=0.500;MQ=29.10;MQ0=0;MQRankSum=-1.851;QD=1.22;ReadPosRankSum=2.770;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,5:27:68:68,0,438 0/1:22,2:24:8:8,0,349 0/0:14,2:16:0:0,0,241 0/1:2,1:3:21:29,0,21 +chr11 96092376 rs10765801 C T 475.84 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.441;DB;DP=29;Dels=0.00;FS=3.680;HaplotypeScore=0.4903;MLEAC=5;MLEAF=0.625;MQ=34.71;MQ0=0;MQRankSum=-1.973;QD=16.41;ReadPosRankSum=1.277;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,6:11:99:176,0,159 1/1:1,5:6:15:184,15,0 0/1:6,4:10:99:129,0,170 0/1:1,1:2:32:32,0,35 +chr11 100814409 rs619066 G A 1805.55 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.198;DB;DP=83;Dels=0.00;FS=6.351;HaplotypeScore=0.9094;MLEAC=7;MLEAF=0.875;MQ=29.36;MQ0=0;MQRankSum=-1.725;QD=21.75;ReadPosRankSum=0.220;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,10:27:99:283,0,471 1/1:0,16:16:45:518,45,0 1/1:0,27:27:66:754,66,0 1/1:3,10:13:27:295,27,0 +chr11 100830579 rs6590829 G A 3025.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.022;DB;DP=113;Dels=0.00;FS=5.026;HaplotypeScore=1.4859;MLEAC=7;MLEAF=0.875;MQ=35.49;MQ0=0;MQRankSum=-1.993;QD=26.77;ReadPosRankSum=1.460;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:17,11:28:99:302,0,469 1/1:2,31:33:50:1025,50,0 1/1:1,34:36:65:1159,65,0 1/1:0,16:16:45:584,45,0 +chr11 101375615 rs10501981 C G 1168.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.975;DB;DP=59;Dels=0.00;FS=4.135;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=38.54;MQ0=0;MQRankSum=-2.860;QD=19.81;ReadPosRankSum=-0.221;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,6:10:99:202,0,102 0/1:8,12:20:99:409,0,198 0/1:6,8:14:99:288,0,162 0/1:6,9:15:99:312,0,111 +chr11 101786022 . G C 116.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.147;DP=53;Dels=0.04;FS=2.627;HaplotypeScore=10.4499;MLEAC=4;MLEAF=0.500;MQ=21.59;MQ0=0;MQRankSum=2.319;QD=2.20;ReadPosRankSum=-1.402;SB=-2.054e+00 GT:AD:DP:GQ:PL 0/1:7,1:8:16:22,0,16 0/1:11,2:13:44:44,0,47 0/1:12,1:14:16:16,0,100 0/1:13,3:16:54:77,0,54 +chr11 102206988 . G A,T 162.21 . AC=3,2;AF=0.500,0.333;AN=6;BaseQRankSum=1.643;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=14.6378;MLEAC=3,2;MLEAF=0.500,0.333;MQ=19.18;MQ0=0;MQRankSum=1.767;QD=3.12;ReadPosRankSum=-0.403;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/2:11,2,1:14:19:76,25,19,51,0,48 1/2:12,1,5:18:8:125,105,102,20,0,8 0/1:14,2,2:18:14:37,0,14,40,20,60 ./. +chr11 102391446 . G T 52.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.030;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=0.4915;MLEAC=1;MLEAF=0.125;MQ=38.17;MQ0=0;MQRankSum=0.921;QD=5.79;ReadPosRankSum=1.911;SB=0.077 GT:AD:DP:GQ:PL 0/0:22,1:23:14:0,14,494 0/0:24,1:25:15:0,15,669 0/0:29,0:29:51:0,51,668 0/1:5,4:9:88:88,0,120 +chr11 102563739 rs1276289 C T 2246.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.664;DB;DP=232;Dels=0.00;FS=1.383;HaplotypeScore=2.6264;MLEAC=4;MLEAF=0.500;MQ=38.15;MQ0=0;MQRankSum=-4.132;QD=14.49;ReadPosRankSum=1.236;SB=-4.830e+02 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,220,2936 1/1:4,43:47:99:1640,126,0 0/1:55,21:77:99:565,0,1947 0/1:26,5:31:90:90,0,895 +chr11 102567626 rs1940480 C G 625.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.149;DB;DP=42;Dels=0.00;FS=6.348;HaplotypeScore=0.9787;MLEAC=4;MLEAF=0.500;MQ=35.78;MQ0=0;MQRankSum=0.132;QD=18.40;ReadPosRankSum=1.067;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,245 1/1:4,8:12:24:319,24,0 0/1:9,8:18:99:289,0,223 0/1:2,2:4:61:66,0,61 +chr11 102572620 rs2701993 G A 78.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.296;DB;DP=12;Dels=0.00;FS=7.368;HaplotypeScore=0.2080;MLEAC=4;MLEAF=0.500;MQ=31.90;MQ0=0;MQRankSum=-0.296;QD=13.00;ReadPosRankSum=-0.731;SB=-3.478e+01 GT:AD:DP:GQ:PL 1/1:2,2:4:6:81,6,0 0/0:3,0:3:9:0,9,129 1/1:1,1:2:3:41,3,0 0/0:3,0:3:3:0,3,44 +chr11 102962483 . G A 42.43 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.721;DP=96;Dels=0.00;FS=2.308;HaplotypeScore=1.2092;MLEAC=2;MLEAF=0.250;MQ=22.13;MQ0=0;MQRankSum=0.458;QD=0.77;ReadPosRankSum=-0.594;SB=1.32 GT:AD:DP:GQ:PL 0/1:18,2:20:6:6,0,150 0/0:26,1:27:13:0,13,326 0/1:29,6:35:75:75,0,366 0/0:14,0:14:18:0,18,195 +chr11 103060309 rs617059 A G 286.30 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.618;DB;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.4528;MLEAC=4;MLEAF=0.500;MQ=35.45;MQ0=0;MQRankSum=0.000;QD=17.89;ReadPosRankSum=-0.177;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:99:106,0,104 1/1:1,4:5:12:164,12,0 0/1:2,2:4:35:63,0,35 0/0:4,0:4:9:0,9,114 +chr11 103086401 . G A 70.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.684;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=11.5029;MLEAC=2;MLEAF=0.250;MQ=27.56;MQ0=0;MQRankSum=2.879;QD=3.21;ReadPosRankSum=-2.943;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:80:80,0,311 0/0:19,0:19:42:0,42,422 0/0:18,0:18:39:0,39,432 0/1:3,1:4:32:32,0,87 +chr11 103091325 . G A 437.17 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.088;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.3270;MLEAC=4;MLEAF=0.500;MQ=25.67;MQ0=0;MQRankSum=-4.481;QD=2.97;ReadPosRankSum=2.927;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,6:35:9:9,0,351 0/1:33,12:47:99:237,0,389 0/1:40,15:55:99:219,0,347 0/1:8,2:10:14:14,0,85 +chr11 103091538 . A T 131.93 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.194;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=13.6824;MLEAC=5;MLEAF=0.625;MQ=21.33;MQ0=0;MQRankSum=2.528;QD=2.69;ReadPosRankSum=-2.306;SB=-1.219e+00 GT:AD:DP:GQ:PL 0/1:12,2:16:11:11,0,61 0/1:8,3:12:14:80,0,14 0/1:13,2:16:51:51,0,52 1/1:3,1:4:3:32,3,0 +chr11 103107149 . A G 175.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.815;DP=183;Dels=0.01;FS=33.903;HaplotypeScore=5.9097;MLEAC=4;MLEAF=0.500;MQ=31.55;MQ0=0;MQRankSum=-2.805;QD=0.96;ReadPosRankSum=0.013;SB=-5.737e-02 GT:AD:DP:GQ:PL 0/1:51,4:55:19:19,0,977 0/1:49,7:56:54:54,0,1055 0/1:49,7:56:99:104,0,630 0/1:12,3:15:41:41,0,163 +chr11 103907888 . G C 43.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.476;DP=100;Dels=0.00;FS=4.625;HaplotypeScore=5.3331;MLEAC=3;MLEAF=0.375;MQ=27.97;MQ0=0;MQRankSum=-1.293;QD=0.58;ReadPosRankSum=-0.190;SB=-2.525e+00 GT:AD:DP:GQ:PL 0/1:22,3:25:4:4,0,545 0/0:24,1:25:19:0,19,413 0/1:26,5:31:73:73,0,498 0/1:16,2:19:6:6,0,176 +chr11 103908328 . G A 113.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-6.116;DP=417;Dels=0.00;FS=50.963;HaplotypeScore=9.9573;MLEAC=2;MLEAF=0.250;MQ=33.16;MQ0=0;MQRankSum=-1.581;QD=0.54;ReadPosRankSum=-1.387;SB=-6.140e+00 GT:AD:DP:GQ:PL 0/0:79,5:85:40:0,40,2084 0/1:102,8:111:3:3,0,2277 0/0:116,4:120:99:0,154,3092 0/1:86,15:101:99:148,0,1997 +chr11 104869708 rs523104 G C 109.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.871;DB;DP=206;Dels=0.00;FS=3.044;HaplotypeScore=3.0427;MLEAC=1;MLEAF=0.125;MQ=22.66;MQ0=0;MQRankSum=-5.131;QD=2.12;ReadPosRankSum=1.855;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,117,1153 0/1:26,26:52:99:146,0,437 0/0:68,0:68:99:0,144,1386 0/0:37,0:37:69:0,69,708 +chr11 106181562 . T A 51.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.676;DP=65;Dels=0.02;FS=34.874;HaplotypeScore=2.5270;MLEAC=3;MLEAF=0.375;MQ=28.85;MQ0=0;MQRankSum=-0.025;QD=0.97;ReadPosRankSum=-2.403;SB=-2.359e+00 GT:AD:DP:GQ:PL 0/1:15,2:17:29:29,0,402 0/1:17,3:20:58:58,0,264 0/1:13,2:15:6:6,0,267 0/0:12,0:12:21:0,21,233 +chr11 107200634 . G T 45.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.653;DP=218;Dels=0.01;FS=45.741;HaplotypeScore=5.9404;MLEAC=2;MLEAF=0.250;MQ=33.11;MQ0=0;MQRankSum=-2.554;QD=0.50;ReadPosRankSum=-0.574;SB=-3.752e+00 GT:AD:DP:GQ:PL 0/0:58,2:60:66:0,66,1247 0/1:58,5:63:33:33,0,1124 0/0:60,6:68:2:0,2,1400 0/1:22,3:25:52:52,0,354 +chr11 107253627 rs474290 G A 38.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=6;Dels=0.00;FS=3.310;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=18.57;MQ0=0;MQRankSum=1.026;QD=9.50;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,1:3:3:32,3,0 ./. 1/1:0,1:1:3:39,3,0 +chr11 107326336 . A C 79.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.637;DP=129;Dels=0.03;FS=0.000;HaplotypeScore=7.1381;MLEAC=2;MLEAF=0.250;MQ=34.61;MQ0=0;MQRankSum=-3.090;QD=0.94;ReadPosRankSum=0.254;SB=0.076 GT:AD:DP:GQ:PL 0/1:34,3:37:34:34,0,684 0/1:40,5:45:87:87,0,635 0/0:31,1:32:32:0,32,663 0/0:11,0:11:15:0,15,161 +chr11 107462878 rs542650 A C 146.43 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.055;DB;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=0.5784;MLEAC=5;MLEAF=0.625;MQ=30.47;MQ0=0;MQRankSum=0.452;QD=8.61;ReadPosRankSum=-0.251;SB=-6.742e+01 GT:AD:DP:GQ:PL 0/0:5,0:5:12:0,12,170 0/1:5,2:7:35:35,0,79 1/1:2,1:3:3:44,3,0 1/1:3,3:6:9:114,9,0 +chr11 107965145 . A T 256.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.557;DP=109;Dels=0.00;FS=133.006;HaplotypeScore=0.4947;MLEAC=4;MLEAF=0.500;MQ=36.99;MQ0=0;MQRankSum=-5.234;QD=2.35;ReadPosRankSum=0.732;SB=0.180 GT:AD:DP:GQ:PL 0/1:26,6:32:53:53,0,789 0/1:28,10:38:99:190,0,974 0/1:30,4:34:39:39,0,797 0/1:4,1:5:17:17,0,139 +chr11 108014799 rs10890819 C T 1528.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=6.667;DB;DP=109;Dels=0.00;FS=5.565;HaplotypeScore=0.7464;MLEAC=4;MLEAF=0.500;MQ=39.59;MQ0=0;MQRankSum=-2.055;QD=20.11;ReadPosRankSum=2.162;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:2,26:28:54:999,54,0 0/0:33,0:33:87:0,87,1136 0/1:19,10:29:99:285,0,618 0/1:9,10:19:99:293,0,198 +chr11 108044091 rs4144901 T A 650.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.358;DB;DP=130;Dels=0.00;FS=11.517;HaplotypeScore=0.7436;MLEAC=3;MLEAF=0.375;MQ=34.87;MQ0=0;MQRankSum=0.811;QD=7.57;ReadPosRankSum=1.059;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,126,1568 0/1:25,14:39:99:435,0,675 0/1:29,6:35:99:140,0,923 0/1:8,4:12:99:119,0,184 +chr11 108044421 . T C 31.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.244;DP=204;Dels=0.00;FS=4.880;HaplotypeScore=5.1828;MLEAC=1;MLEAF=0.125;MQ=34.03;MQ0=0;MQRankSum=-2.404;QD=2.46;ReadPosRankSum=-1.594;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,150,1825 0/0:65,2:67:99:0,124,2015 0/0:67,0:67:99:0,168,2023 0/1:10,3:13:68:68,0,187 +chr11 108128327 . T G 155.83 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.026;DP=84;Dels=0.02;FS=5.399;HaplotypeScore=23.3938;MLEAC=5;MLEAF=0.625;MQ=17.67;MQ0=0;MQRankSum=-0.517;QD=1.86;ReadPosRankSum=1.790;SB=4.87 GT:AD:DP:GQ:PL 0/1:14,10:25:11:11,0,108 0/1:20,7:27:51:51,0,121 0/1:21,5:26:99:112,0,100 1/1:2,2:4:3:24,3,0 +chr11 108693244 rs1824665 A G 818.26 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.663;DB;DP=58;Dels=0.00;FS=7.704;HaplotypeScore=1.3306;MLEAC=7;MLEAF=0.875;MQ=23.01;MQ0=0;MQRankSum=1.733;QD=14.11;ReadPosRankSum=0.211;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,12:15:24:270,24,0 0/1:8,2:10:14:14,0,116 1/1:4,14:18:6:269,6,0 1/1:4,11:15:27:309,27,0 +chr11 108709412 . A G 457.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.990;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.2912;MLEAC=3;MLEAF=0.375;MQ=30.50;MQ0=0;MQRankSum=-1.445;QD=6.54;ReadPosRankSum=2.730;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,10:33:99:203,0,514 0/0:39,0:39:78:0,78,971 0/1:17,13:30:99:278,0,412 0/1:6,1:7:20:20,0,175 +chr11 108712050 . G A 35.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.584;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=1.7568;MLEAC=2;MLEAF=0.250;MQ=27.82;MQ0=0;MQRankSum=1.696;QD=0.95;ReadPosRankSum=-0.806;SB=-3.486e-01 GT:AD:DP:GQ:PL 0/0:37,0:37:69:0,69,802 0/1:22,3:25:61:61,0,402 0/0:32,0:32:60:0,60,631 0/1:10,1:11:15:15,0,145 +chr11 108722851 rs10890899 C G 2024.56 . AC=7;AF=0.875;AN=8;BaseQRankSum=-1.112;DB;DP=94;Dels=0.03;FS=13.093;HaplotypeScore=1.2215;MLEAC=7;MLEAF=0.875;MQ=30.78;MQ0=0;MQRankSum=-1.892;QD=21.54;ReadPosRankSum=0.791;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,19:22:57:659,57,0 0/1:17,11:28:99:298,0,549 1/1:6,27:33:78:894,78,0 1/1:0,8:8:21:218,21,0 +chr11 110034052 . T C 67.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.048;DP=194;Dels=0.00;FS=66.728;HaplotypeScore=8.0301;MLEAC=1;MLEAF=0.125;MQ=34.21;MQ0=0;MQRankSum=-3.103;QD=2.72;ReadPosRankSum=0.445;SB=-5.820e+00 GT:AD:DP:GQ:PL 0/0:51,3:54:66:0,66,1435 0/0:45,5:50:37:0,37,1325 0/0:62,3:65:99:0,112,1892 0/1:19,6:25:99:104,0,356 +chr11 111167131 . C A 30.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.014;DP=69;Dels=0.00;FS=1.805;HaplotypeScore=11.1733;MLEAC=3;MLEAF=0.375;MQ=27.42;MQ0=0;MQRankSum=-2.122;QD=0.61;ReadPosRankSum=3.501;SB=0.195 GT:AD:DP:GQ:PL 0/1:11,2:13:10:10,0,161 0/0:19,1:20:9:0,9,288 0/1:15,3:18:22:22,0,216 0/1:15,3:18:40:40,0,163 +chr11 111338328 rs12803406 A G 779.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.219;DB;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.0629;MLEAC=3;MLEAF=0.375;MQ=33.42;MQ0=0;MQRankSum=-2.055;QD=19.02;ReadPosRankSum=0.817;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,17:19:48:550,48,0 0/0:26,0:26:72:0,72,945 0/1:13,9:22:99:277,0,348 0/0:9,1:10:3:0,3,255 +chr11 111590656 . C G 91.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.364;DP=107;Dels=0.01;FS=24.494;HaplotypeScore=5.4123;MLEAC=3;MLEAF=0.375;MQ=32.75;MQ0=0;MQRankSum=-2.182;QD=1.14;ReadPosRankSum=-2.713;SB=1.53 GT:AD:DP:GQ:PL 0/1:19,4:23:58:58,0,501 0/1:33,4:37:11:11,0,724 0/0:25,1:27:24:0,24,658 0/1:15,4:19:65:65,0,376 +chr11 111749336 . A G 147.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.705;DP=139;Dels=0.01;FS=31.872;HaplotypeScore=7.5624;MLEAC=2;MLEAF=0.250;MQ=32.92;MQ0=0;MQRankSum=-0.195;QD=2.64;ReadPosRankSum=0.956;SB=0.528 GT:AD:DP:GQ:PL 0/1:26,3:29:28:28,0,588 0/0:44,0:44:72:0,72,857 0/0:38,1:39:55:0,55,928 0/1:19,7:26:99:161,0,333 +chr11 111784245 . G C 53.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.623;DP=126;Dels=0.00;FS=5.975;HaplotypeScore=38.7984;MLEAC=3;MLEAF=0.375;MQ=19.84;MQ0=0;MQRankSum=0.838;QD=0.54;ReadPosRankSum=-0.666;SB=1.61 GT:AD:DP:GQ:PL 0/0:23,2:26:9:0,9,79 0/1:31,1:33:7:7,0,109 0/1:32,4:37:16:16,0,78 0/1:25,4:30:63:72,0,63 +chr11 111953643 . A T 67.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.787;DP=156;Dels=0.00;FS=16.826;HaplotypeScore=1.1807;MLEAC=2;MLEAF=0.250;MQ=37.75;MQ0=0;MQRankSum=-2.397;QD=1.06;ReadPosRankSum=0.687;SB=-1.134e-02 GT:AD:DP:GQ:PL 0/1:32,5:37:64:64,0,972 0/0:42,0:42:99:0,105,1399 0/0:49,1:50:80:0,80,1495 0/1:23,4:27:45:45,0,561 +chr11 112070660 . A G 185.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.058;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.9790;MLEAC=3;MLEAF=0.375;MQ=36.47;MQ0=0;MQRankSum=-0.360;QD=3.63;ReadPosRankSum=2.217;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,5:19:99:149,0,219 0/1:20,2:22:25:25,0,410 0/0:20,1:22:10:0,10,275 0/1:8,2:10:54:54,0,122 +chr11 112088499 rs2217401 A C 3049.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.123;DB;DP=110;Dels=0.02;FS=18.622;HaplotypeScore=1.6799;MLEAC=8;MLEAF=1.00;MQ=31.55;MQ0=0;MQRankSum=0.233;QD=27.73;ReadPosRankSum=0.534;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:4,22:26:66:822,66,0 1/1:7,27:34:43:938,43,0 1/1:3,28:31:81:998,81,0 1/1:6,11:17:27:331,27,0 +chr11 113113561 . A T 149.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.806;DP=252;Dels=0.00;FS=75.169;HaplotypeScore=2.9396;MLEAC=2;MLEAF=0.250;MQ=35.82;MQ0=0;MQRankSum=-2.240;QD=1.39;ReadPosRankSum=0.411;SB=-1.261e+00 GT:AD:DP:GQ:PL 0/1:50,6:56:66:66,0,1144 0/0:63,5:68:10:0,10,1806 0/0:72,4:76:51:0,51,1982 0/1:43,8:51:99:125,0,1349 +chr11 113195349 . G C 35.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.237;DP=126;Dels=0.00;FS=18.805;HaplotypeScore=3.1958;MLEAC=2;MLEAF=0.250;MQ=34.48;MQ0=0;MQRankSum=-2.590;QD=0.75;ReadPosRankSum=-0.532;SB=-3.772e+00 GT:AD:DP:GQ:PL 0/0:40,1:41:72:0,72,1238 0/0:34,2:37:18:0,18,901 0/1:30,5:35:69:69,0,642 0/1:12,1:13:5:5,0,232 +chr11 113212553 rs6589372 T C 669.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.381;DB;DP=171;Dels=0.00;FS=5.027;HaplotypeScore=0.7165;MLEAC=1;MLEAF=0.125;MQ=40.74;MQ0=0;MQRankSum=-2.803;QD=14.89;ReadPosRankSum=0.695;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,102,1362 0/1:24,21:45:99:706,0,761 0/0:57,0:57:99:0,156,2100 0/0:34,0:34:93:0,93,1250 +chr11 113264470 rs4938013 A C 365.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.017;DB;DP=186;Dels=0.00;FS=3.680;HaplotypeScore=4.1697;MLEAC=1;MLEAF=0.125;MQ=34.47;MQ0=0;MQRankSum=-1.027;QD=7.79;ReadPosRankSum=0.142;SB=-1.880e+02 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,141,1745 0/1:32,15:47:99:402,0,888 0/0:48,0:48:99:0,135,1727 0/0:42,1:43:85:0,85,1203 +chr11 113860334 . T C 99.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.265;DP=216;Dels=0.00;FS=44.776;HaplotypeScore=2.9562;MLEAC=1;MLEAF=0.125;MQ=35.35;MQ0=0;MQRankSum=-4.491;QD=1.85;ReadPosRankSum=-1.063;SB=-4.255e+00 GT:AD:DP:GQ:PL 0/0:53,2:55:70:0,70,1573 0/0:49,2:51:75:0,75,1472 0/0:55,1:56:95:0,95,1488 0/1:44,10:54:99:136,0,1071 +chr11 114057737 . A T 32.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.321;DP=163;Dels=0.01;FS=29.934;HaplotypeScore=5.2054;MLEAC=2;MLEAF=0.250;MQ=35.14;MQ0=0;MQRankSum=-1.822;QD=0.38;ReadPosRankSum=-0.199;SB=-5.624e-02 GT:AD:DP:GQ:PL 0/0:36,1:37:66:0,66,1077 0/1:35,3:38:21:21,0,864 0/0:37,2:39:66:0,66,1196 0/1:41,5:48:53:53,0,865 +chr11 114092153 rs651748 C A 41.25 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.026;DB;DP=5;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=31.20;MQ0=0;MQRankSum=0.000;QD=13.75;ReadPosRankSum=1.026;SB=-3.124e+01 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,44 1/1:0,1:1:3:40,3,0 ./. 1/1:1,1:2:3:39,3,0 +chr11 114097687 rs529822 G A 52.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=7;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=22.97;MQ0=0;MQRankSum=0.736;QD=13.00;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:2:3:42,3,0 1/1:1,1:2:3:43,3,0 +chr11 114324444 rs12226764 G A 192.52 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.524;DB;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.5936;MLEAC=3;MLEAF=0.375;MQ=28.98;MQ0=0;MQRankSum=2.032;QD=12.83;ReadPosRankSum=-0.572;SB=-5.579e+01 GT:AD:DP:GQ:PL 1/1:2,4:6:12:152,12,0 0/0:7,0:7:18:0,18,180 0/0:8,0:8:12:0,12,146 0/1:6,3:9:88:88,0,92 +chr11 114441639 rs508631 A G 819.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.412;DB;DP=112;Dels=0.02;FS=0.000;HaplotypeScore=0.9672;MLEAC=3;MLEAF=0.375;MQ=34.54;MQ0=0;MQRankSum=-5.018;QD=10.00;ReadPosRankSum=1.032;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:30,0:30:81:0,81,1051 0/1:18,16:34:99:421,0,556 0/1:23,15:38:99:424,0,736 0/1:7,1:8:18:18,0,125 +chr11 116093734 rs1348010 A T 51.77 . AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.73;MQ0=0;QD=25.88;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:83,6,0 ./. ./. ./. +chr11 116586283 rs7350481 T C 82.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.727;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=26.31;MQ0=0;MQRankSum=0.727;QD=13.71;ReadPosRankSum=0.727;SB=-3.725e+01 GT:AD:DP:GQ:PL 1/1:0,1:1:3:39,3,0 1/1:2,1:4:3:39,3,0 1/1:0,1:1:3:39,3,0 ./. +chr11 116619390 . A T 262.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.732;DP=43;Dels=0.00;FS=2.542;HaplotypeScore=0.3634;MLEAC=1;MLEAF=0.125;MQ=31.46;MQ0=0;MQRankSum=-0.753;QD=15.42;ReadPosRankSum=2.052;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:30:0,30,398 0/1:7,10:17:52:298,0,52 0/0:9,0:9:21:0,21,248 0/0:4,0:4:12:0,12,150 +chr11 116631458 . C T 39.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.437;DP=219;Dels=0.03;FS=26.083;HaplotypeScore=23.9412;MLEAC=3;MLEAF=0.375;MQ=25.66;MQ0=0;MQRankSum=-1.348;QD=0.24;ReadPosRankSum=0.900;SB=1.78 GT:AD:DP:GQ:PL 0/1:49,4:53:26:26,0,597 0/0:47,3:50:14:0,14,628 0/1:64,5:69:24:24,0,919 0/1:37,3:41:32:32,0,408 +chr11 116654159 rs618923 A G 467.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.210;DB;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=29.44;MQ0=0;MQRankSum=1.915;QD=8.66;ReadPosRankSum=1.336;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,6:24:99:120,0,374 0/0:23,0:23:36:0,36,487 0/1:13,6:19:54:204,0,54 0/1:6,5:11:61:187,0,61 +chr11 116691486 . T A 85.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.553;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=2.2798;MLEAC=3;MLEAF=0.375;MQ=30.05;MQ0=0;MQRankSum=-1.208;QD=1.42;ReadPosRankSum=-1.573;SB=-6.495e-01 GT:AD:DP:GQ:PL 0/0:14,0:14:36:0,36,403 0/1:11,1:12:6:6,0,232 0/1:21,3:24:35:35,0,489 0/1:18,4:23:86:86,0,327 +chr11 116693751 . G T 34.15 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.107;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=2.4136;MLEAC=3;MLEAF=0.375;MQ=29.48;MQ0=0;MQRankSum=1.274;QD=0.52;ReadPosRankSum=-0.917;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,2:19:3:3,0,368 0/1:15,1:16:10:10,0,172 0/0:18,0:18:30:0,30,302 0/1:27,3:30:61:61,0,300 +chr11 116717256 . G C 70.04 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.372;DP=106;Dels=0.01;FS=12.226;HaplotypeScore=14.1138;MLEAC=2;MLEAF=0.250;MQ=27.01;MQ0=0;MQRankSum=-1.283;QD=1.27;ReadPosRankSum=1.752;SB=0.228 GT:AD:DP:GQ:PL 0/0:21,1:22:9:0,9,354 0/1:22,3:25:87:87,0,98 0/1:26,4:30:23:23,0,365 0/0:23,5:28:4:0,4,311 +chr11 116732512 rs2075292 G T 1185.02 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.715;DB;DP=36;Dels=0.00;FS=10.280;HaplotypeScore=0.4334;MLEAC=8;MLEAF=1.00;MQ=40.28;MQ0=0;MQRankSum=1.810;QD=32.92;ReadPosRankSum=0.905;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,6:7:18:249,18,0 1/1:4,7:11:21:298,21,0 1/1:2,7:9:21:297,21,0 1/1:0,9:9:27:380,27,0 +chr11 117050038 . T G 64.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.304;DP=85;Dels=0.05;FS=0.000;HaplotypeScore=6.6015;MLEAC=3;MLEAF=0.375;MQ=24.34;MQ0=0;MQRankSum=0.435;QD=0.90;ReadPosRankSum=-0.385;SB=0.111 GT:AD:DP:GQ:PL 0/1:12,2:14:29:29,0,147 0/0:12,0:13:15:0,15,152 0/1:27,4:31:74:74,0,302 0/1:21,2:23:2:2,0,135 +chr11 117063995 . C T 547.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.461;DP=98;Dels=0.02;FS=10.901;HaplotypeScore=19.9073;MLEAC=4;MLEAF=0.500;MQ=22.40;MQ0=0;MQRankSum=0.036;QD=5.59;ReadPosRankSum=0.980;SB=0.015 GT:AD:DP:GQ:PL 0/1:16,9:25:99:183,0,127 0/1:14,7:21:56:87,0,56 0/1:17,12:29:56:220,0,56 0/1:15,6:21:57:100,0,57 +chr11 117166058 . C T 398.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.419;DP=103;Dels=0.00;FS=7.532;HaplotypeScore=0.7404;MLEAC=4;MLEAF=0.500;MQ=30.73;MQ0=0;MQRankSum=0.077;QD=3.87;ReadPosRankSum=-0.254;SB=-1.216e-02 GT:AD:DP:GQ:PL 0/1:23,3:26:39:39,0,464 0/1:22,6:28:99:134,0,347 0/1:18,5:23:99:127,0,221 0/1:19,7:26:99:141,0,272 +chr11 117227442 . T C 61.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.031;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=6.1976;MLEAC=3;MLEAF=0.375;MQ=20.20;MQ0=0;MQRankSum=-0.371;QD=3.22;ReadPosRankSum=0.536;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:13:13,0,77 0/1:3,2:5:17:37,0,17 0/1:4,3:7:53:53,0,77 0/0:6,0:6:6:0,6,70 +chr11 117258198 rs501776 T C 149.10 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.019;DB;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.1835;MLEAC=2;MLEAF=0.250;MQ=36.36;MQ0=0;MQRankSum=0.624;QD=5.14;ReadPosRankSum=0.563;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:69:69,0,266 0/0:11,1:12:2:0,2,293 0/1:10,4:14:96:120,0,96 0/0:9,0:9:21:0,21,255 +chr11 117301679 . A G 463.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.792;DP=139;Dels=0.01;FS=134.652;HaplotypeScore=19.7555;MLEAC=4;MLEAF=0.500;MQ=22.58;MQ0=0;MQRankSum=0.186;QD=3.34;ReadPosRankSum=2.572;SB=-2.212e-01 GT:AD:DP:GQ:PL 0/1:22,9:31:99:172,0,297 0/1:31,8:40:99:129,0,252 0/1:26,7:33:99:108,0,164 0/1:25,8:33:97:97,0,198 +chr11 117310066 . T G 42.05 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.470;DP=137;Dels=0.00;FS=29.119;HaplotypeScore=14.9402;MLEAC=4;MLEAF=0.500;MQ=31.46;MQ0=0;MQRankSum=-4.839;QD=0.31;ReadPosRankSum=-1.691;SB=-4.750e-01 GT:AD:DP:GQ:PL 0/1:24,5:29:11:11,0,546 0/1:26,4:31:20:20,0,611 0/1:34,3:37:14:14,0,736 0/1:35,5:40:39:39,0,734 +chr11 117785271 . A T 116.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.132;DP=187;Dels=0.00;FS=2.237;HaplotypeScore=17.0364;MLEAC=3;MLEAF=0.375;MQ=31.38;MQ0=0;MQRankSum=-1.305;QD=0.83;ReadPosRankSum=-0.937;SB=0.023 GT:AD:DP:GQ:PL 0/0:43,3:46:26:0,26,1114 0/1:40,6:46:34:34,0,893 0/1:40,5:45:33:33,0,857 0/1:44,6:50:93:93,0,809 +chr11 117799923 rs7928668 T C 549.14 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.284;DB;DP=35;Dels=0.00;FS=10.375;HaplotypeScore=0.5825;MLEAC=6;MLEAF=0.750;MQ=30.95;MQ0=0;MQRankSum=1.397;QD=15.69;ReadPosRankSum=0.189;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:98:98,0,163 0/1:5,3:8:85:85,0,161 1/1:4,7:11:21:264,21,0 1/1:4,4:8:12:148,12,0 +chr11 117988784 rs8924 A G 53.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.386;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.2499;MLEAC=2;MLEAF=0.250;MQ=30.00;MQ0=0;MQRankSum=-0.546;QD=13.48;ReadPosRankSum=-0.296;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:9:95,9,0 0/0:3,0:3:6:0,6,81 0/0:2,0:2:6:0,6,74 0/0:1,0:1:3:0,3,40 +chr11 118245738 . A T 74.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.975;DP=155;Dels=0.01;FS=59.730;HaplotypeScore=7.5136;MLEAC=2;MLEAF=0.250;MQ=27.63;MQ0=0;MQRankSum=-1.712;QD=1.00;ReadPosRankSum=0.274;SB=-1.152e+00 GT:AD:DP:GQ:PL 0/1:31,5:36:93:93,0,574 0/0:30,2:32:10:0,10,623 0/0:45,3:48:56:0,56,1019 0/1:32,6:38:23:23,0,687 +chr11 118260601 . A T 77 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.890;DP=157;Dels=0.00;FS=2.189;HaplotypeScore=2.6950;MLEAC=1;MLEAF=0.125;MQ=35.89;MQ0=0;MQRankSum=-1.987;QD=1.92;ReadPosRankSum=1.035;SB=0.046 GT:AD:DP:GQ:PL 0/0:46,0:46:81:0,81,981 0/1:34,6:40:99:113,0,646 0/0:38,1:40:25:0,25,706 0/0:30,1:31:26:0,26,607 +chr11 118373671 . C T 70.33 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.040;DP=263;Dels=0.00;FS=77.897;HaplotypeScore=3.6649;MLEAC=3;MLEAF=0.375;MQ=36.01;MQ0=0;MQRankSum=-5.711;QD=0.37;ReadPosRankSum=1.796;SB=-1.764e+00 GT:AD:DP:GQ:PL 0/1:59,6:65:8:8,0,1559 0/1:65,8:73:81:81,0,1709 0/0:66,6:72:4:0,4,1872 0/1:48,5:53:22:22,0,1390 +chr11 118509669 . T A 43.03 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.356;DP=25;Dels=0.00;FS=6.317;HaplotypeScore=3.2266;MLEAC=2;MLEAF=0.333;MQ=25.16;MQ0=0;MQRankSum=-0.705;QD=2.26;ReadPosRankSum=1.356;SB=2.20 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,33 0/1:7,3:10:36:36,0,110 0/1:6,3:9:44:44,0,57 ./. +chr11 118849423 . C G 255.91 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.921;DP=35;Dels=0.00;FS=8.682;HaplotypeScore=3.3961;MLEAC=5;MLEAF=0.625;MQ=22.84;MQ0=0;MQRankSum=-0.562;QD=7.31;ReadPosRankSum=2.180;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,5:6:15:143,15,0 0/1:6,4:10:42:42,0,48 0/1:5,6:11:56:101,0,56 0/1:5,3:8:15:15,0,42 +chr11 118890910 rs143492331 T C 32.23 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.780;DB;DP=140;Dels=0.01;FS=49.854;HaplotypeScore=4.9157;MLEAC=1;MLEAF=0.125;MQ=38.41;MQ0=0;MQRankSum=-3.767;QD=1.01;ReadPosRankSum=-1.179;SB=-7.308e+00 GT:AD:DP:GQ:PL 0/0:34,0:34:90:0,90,1214 0/1:25,5:32:68:68,0,776 0/0:40,2:42:52:0,52,1277 0/0:29,2:31:7:0,7,818 +chr11 118949056 . C G 399.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.163;DP=215;Dels=0.01;FS=2.290;HaplotypeScore=21.4566;MLEAC=2;MLEAF=0.250;MQ=29.06;MQ0=0;MQRankSum=-1.462;QD=4.00;ReadPosRankSum=2.574;SB=-7.382e-03 GT:AD:DP:GQ:PL 0/0:56,2:59:33:0,33,570 0/1:33,11:48:99:263,0,316 0/0:54,1:55:44:0,44,715 0/1:43,8:51:99:178,0,405 +chr11 118970878 rs603826 A C 1405.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.628;DB;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.9145;MLEAC=3;MLEAF=0.375;MQ=36.31;MQ0=0;MQRankSum=-2.300;QD=13.52;ReadPosRankSum=0.564;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,129,1696 0/1:23,15:38:99:461,0,752 0/1:23,21:44:99:652,0,700 0/1:11,11:22:99:336,0,238 +chr11 119027486 . C T 36.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.376;DP=128;Dels=0.00;FS=4.669;HaplotypeScore=2.8559;MLEAC=1;MLEAF=0.125;MQ=34.20;MQ0=0;MQRankSum=-3.127;QD=1.95;ReadPosRankSum=-1.245;SB=0.146 GT:AD:DP:GQ:PL 0/0:34,1:35:42:0,42,863 0/0:36,2:38:33:0,33,1041 0/0:36,0:36:87:0,87,1011 0/1:15,4:19:73:73,0,339 +chr11 119027611 . G T 57.45 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.213;DP=153;Dels=0.00;FS=70.378;HaplotypeScore=7.8404;MLEAC=2;MLEAF=0.250;MQ=31.64;MQ0=0;MQRankSum=-0.261;QD=0.86;ReadPosRankSum=1.402;SB=-2.879e+00 GT:AD:DP:GQ:PL 0/1:29,4:34:49:49,0,592 0/0:40,2:43:18:0,18,910 0/0:38,4:43:1:0,1,854 0/1:28,4:33:48:48,0,612 +chr11 119043745 rs561830 C T 986.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.599;DB;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.6624;MLEAC=4;MLEAF=0.500;MQ=28.79;MQ0=0;MQRankSum=-0.572;QD=21.45;ReadPosRankSum=1.969;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:18:0,18,221 1/1:5,15:20:45:492,45,0 0/1:3,12:15:40:333,0,40 0/1:3,8:11:38:210,0,38 +chr11 119060276 . G A 44.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.724;DP=129;Dels=0.00;FS=2.251;HaplotypeScore=1.8694;MLEAC=2;MLEAF=0.250;MQ=28.68;MQ0=0;MQRankSum=-1.566;QD=0.77;ReadPosRankSum=-0.857;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:30,2:32:34:0,34,674 0/1:27,4:32:36:36,0,375 0/0:39,0:39:90:0,90,1024 0/1:22,4:26:50:50,0,338 +chr11 119103267 . A T 213.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.340;DP=128;Dels=0.00;FS=56.988;HaplotypeScore=10.0741;MLEAC=4;MLEAF=0.500;MQ=30.86;MQ0=0;MQRankSum=-3.321;QD=1.67;ReadPosRankSum=3.340;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:24,4:29:49:49,0,389 0/1:34,5:39:89:89,0,470 0/1:28,6:34:58:58,0,390 0/1:19,6:26:60:60,0,329 +chr11 119290325 . G T 114.94 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.662;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.2290;MLEAC=3;MLEAF=0.375;MQ=30.71;MQ0=0;MQRankSum=-1.129;QD=6.76;ReadPosRankSum=1.674;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:67:67,0,133 0/0:8,0:8:18:0,18,205 0/1:2,2:4:61:61,0,61 1/1:2,1:3:3:31,3,0 +chr11 119547817 . C A 41.37 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.012;DP=158;Dels=0.01;FS=27.898;HaplotypeScore=4.7693;MLEAC=1;MLEAF=0.125;MQ=36.15;MQ0=0;MQRankSum=-2.369;QD=1.22;ReadPosRankSum=-1.261;SB=-7.461e+00 GT:AD:DP:GQ:PL 0/0:33,2:35:34:0,34,1007 0/0:40,3:43:5:0,5,1149 0/0:45,0:45:99:0,114,1449 0/1:29,5:34:77:77,0,743 +chr11 119692663 rs542903 T C 3381.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.300;DB;DP=124;Dels=0.00;FS=1.981;HaplotypeScore=1.4882;MLEAC=7;MLEAF=0.875;MQ=34.95;MQ0=0;MQRankSum=1.633;QD=27.27;ReadPosRankSum=2.400;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,23:23:63:828,63,0 0/1:21,17:38:99:505,0,562 1/1:2,32:34:53:1176,53,0 1/1:4,25:29:45:872,45,0 +chr11 120180191 . A C 95.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.495;DP=156;Dels=0.01;FS=100.945;HaplotypeScore=9.9747;MLEAC=3;MLEAF=0.375;MQ=30.33;MQ0=0;MQRankSum=-3.590;QD=0.87;ReadPosRankSum=1.569;SB=0.788 GT:AD:DP:GQ:PL 0/1:26,5:31:33:33,0,783 0/1:36,7:43:59:59,0,735 0/0:43,2:45:56:0,56,1160 0/1:30,6:36:47:47,0,691 +chr11 120350847 . T G 121.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.372;DP=224;Dels=0.00;FS=97.963;HaplotypeScore=5.4959;MLEAC=2;MLEAF=0.250;MQ=36.22;MQ0=0;MQRankSum=-1.059;QD=1.10;ReadPosRankSum=3.385;SB=-7.639e-01 GT:AD:DP:GQ:PL 0/0:57,2:59:69:0,69,1437 0/1:39,8:47:85:85,0,1160 0/1:57,7:64:78:78,0,1215 0/0:51,3:54:27:0,27,992 +chr11 121032978 rs526433 G A 1702.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.441;DB;DP=126;Dels=0.00;FS=4.782;HaplotypeScore=1.3848;MLEAC=5;MLEAF=0.625;MQ=38.33;MQ0=0;MQRankSum=-1.879;QD=13.51;ReadPosRankSum=0.776;SB=-5.288e+02 GT:AD:DP:GQ:PL 1/1:9,19:28:30:717,30,0 0/1:24,12:36:99:374,0,672 0/1:27,9:36:99:261,0,985 0/1:13,13:26:99:396,0,337 +chr11 121474822 . A T 619.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.339;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.4697;MLEAC=4;MLEAF=0.500;MQ=32.86;MQ0=0;MQRankSum=0.656;QD=4.70;ReadPosRankSum=2.419;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,8:34:99:185,0,401 0/1:28,1:29:12:12,0,245 0/1:35,12:47:99:297,0,634 0/1:16,6:22:99:168,0,158 +chr11 122659850 . G C 121.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.919;DP=232;Dels=0.00;FS=138.113;HaplotypeScore=17.4731;MLEAC=3;MLEAF=0.375;MQ=32.11;MQ0=0;MQRankSum=-3.422;QD=0.72;ReadPosRankSum=4.488;SB=-9.769e-01 GT:AD:DP:GQ:PL 0/1:51,10:61:63:63,0,869 0/1:48,8:56:95:95,0,988 0/0:59,5:64:15:0,15,1360 0/1:45,6:51:5:5,0,757 +chr11 122738067 . A C 41.67 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.036;DP=23;Dels=0.00;FS=6.990;HaplotypeScore=5.1231;MLEAC=4;MLEAF=0.667;MQ=19.19;MQ0=0;MQRankSum=1.036;QD=3.79;ReadPosRankSum=0.365;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:6:0,6,45 1/1:4,3:7:6:56,6,0 1/1:3,1:4:3:26,3,0 ./. +chr11 123598691 rs687335 A G 152.38 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.742;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=30.40;MQ0=0;MQRankSum=0.742;QD=19.05;ReadPosRankSum=-0.742;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:30:74,0,30 1/1:0,2:2:6:52,6,0 1/1:0,2:2:6:66,6,0 ./. +chr11 124029856 . C A 36.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.831;DP=76;Dels=0.01;FS=10.465;HaplotypeScore=3.7139;MLEAC=3;MLEAF=0.375;MQ=30.15;MQ0=0;MQRankSum=-0.963;QD=0.72;ReadPosRankSum=1.280;SB=-7.679e-01 GT:AD:DP:GQ:PL 0/1:18,2:20:9:9,0,516 0/1:13,2:15:28:28,0,271 0/0:24,0:24:54:0,54,584 0/1:13,3:16:42:42,0,181 +chr11 124120302 rs2512239 A G 196.29 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.742;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=28.03;MQ0=0;MQRankSum=0.742;QD=19.63;ReadPosRankSum=-0.742;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:34,3,0 1/1:1,3:4:9:120,9,0 1/1:0,1:1:3:39,3,0 1/1:2,1:4:3:40,3,0 +chr11 124135147 . T A 130.49 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.939;DP=61;Dels=0.00;FS=20.669;HaplotypeScore=1.8104;MLEAC=6;MLEAF=0.750;MQ=12.87;MQ0=0;MQRankSum=4.121;QD=2.14;ReadPosRankSum=-0.917;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:13,1:14:3:32,3,0 0/1:14,2:16:22:23,0,22 1/1:16,2:18:6:49,6,0 0/1:8,5:13:13:69,0,13 +chr11 124227543 rs644353 A G 57.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.358;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=28.57;MQ0=0;MQRankSum=0.358;QD=14.31;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,2:3:31:53,0,31 1/1:0,1:1:3:42,3,0 0/0:1,0:1:3:0,3,22 ./. +chr11 124310505 . G A 75.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.030;DP=102;Dels=0.00;FS=36.690;HaplotypeScore=13.2997;MLEAC=3;MLEAF=0.375;MQ=25.68;MQ0=0;MQRankSum=0.789;QD=1.06;ReadPosRankSum=1.088;SB=-1.239e+00 GT:AD:DP:GQ:PL 0/0:28,1:30:6:0,6,352 0/1:24,3:27:55:55,0,190 0/1:25,2:27:7:7,0,255 0/1:16,2:18:55:55,0,154 +chr11 124501084 . G T 321.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.588;DP=127;Dels=0.01;FS=2.615;HaplotypeScore=0.5764;MLEAC=3;MLEAF=0.375;MQ=35.33;MQ0=0;MQRankSum=-4.833;QD=3.35;ReadPosRankSum=1.155;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,10:31:99:153,0,465 0/0:29,2:31:46:0,46,843 0/1:34,6:41:99:116,0,719 0/1:18,5:23:96:96,0,325 +chr11 124744788 . C T 42.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.072;DP=28;Dels=0.00;FS=2.869;HaplotypeScore=2.9941;MLEAC=3;MLEAF=0.375;MQ=21.87;MQ0=0;MQRankSum=1.083;QD=2.52;ReadPosRankSum=-0.361;SB=25.46 GT:AD:DP:GQ:PL 0/0:4,0:5:3:0,3,31 1/1:10,2:12:6:63,6,0 0/0:5,0:6:3:0,3,25 0/1:4,1:5:21:21,0,31 +chr11 124750357 . G T 94.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.269;DP=53;Dels=0.00;FS=10.855;HaplotypeScore=4.9947;MLEAC=4;MLEAF=0.500;MQ=27.88;MQ0=0;MQRankSum=0.054;QD=1.79;ReadPosRankSum=-1.880;SB=-1.015e-01 GT:AD:DP:GQ:PL 0/1:8,1:9:15:15,0,124 0/1:8,1:9:13:13,0,162 0/1:20,2:22:41:41,0,148 0/1:9,4:13:68:68,0,157 +chr11 124761276 . T A 111.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.671;DP=76;Dels=0.00;FS=4.746;HaplotypeScore=9.5205;MLEAC=3;MLEAF=0.375;MQ=25.49;MQ0=0;MQRankSum=1.765;QD=1.86;ReadPosRankSum=1.063;SB=-1.751e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:30:30,0,274 0/1:19,3:22:60:60,0,213 0/1:17,3:20:65:65,0,257 0/0:16,0:16:30:0,30,305 +chr11 124764309 . C T 97.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.016;DP=61;Dels=0.00;FS=4.908;HaplotypeScore=3.1587;MLEAC=4;MLEAF=0.500;MQ=32.64;MQ0=0;MQRankSum=-1.862;QD=1.60;ReadPosRankSum=0.314;SB=-1.969e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:54:54,0,296 0/1:12,2:15:30:30,0,213 0/1:14,2:16:25:25,0,238 0/1:14,2:16:31:31,0,257 +chr11 124955944 . T C 44.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.027;DP=106;Dels=0.00;FS=24.021;HaplotypeScore=2.9396;MLEAC=3;MLEAF=0.375;MQ=33.69;MQ0=0;MQRankSum=-4.512;QD=0.54;ReadPosRankSum=-0.282;SB=-5.122e-01 GT:AD:DP:GQ:PL 0/0:22,2:24:6:0,6,647 0/1:28,5:33:45:45,0,837 0/1:22,4:26:16:16,0,654 0/1:20,3:23:25:25,0,325 +chr11 124984855 rs663734 C T 730.15 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.589;DB;DP=25;Dels=0.00;FS=13.802;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=30.91;MQ0=0;MQRankSum=1.589;QD=29.21;ReadPosRankSum=-1.300;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:246,21,0 1/1:0,5:5:15:181,15,0 1/1:0,5:5:15:190,15,0 1/1:2,5:7:12:152,12,0 +chr11 125472741 . T G 392.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.858;DP=130;Dels=0.00;FS=56.644;HaplotypeScore=4.9965;MLEAC=4;MLEAF=0.500;MQ=34.98;MQ0=0;MQRankSum=-3.014;QD=3.02;ReadPosRankSum=2.140;SB=-1.032e-02 GT:AD:DP:GQ:PL 0/1:30,10:40:99:186,0,861 0/1:37,5:42:99:103,0,703 0/1:29,6:35:99:104,0,600 0/1:10,3:13:42:42,0,298 +chr11 125617881 rs541350 T C 60.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.411;DB;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.3670;MLEAC=1;MLEAF=0.125;MQ=31.61;MQ0=0;MQRankSum=0.502;QD=15.02;ReadPosRankSum=1.871;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,3:4:22:96,0,22 0/0:5,0:5:15:0,15,187 0/0:7,0:7:18:0,18,238 0/0:8,0:8:18:0,18,183 +chr11 125766044 rs549990 C A 6710.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.147;DB;DP=196;Dels=0.00;FS=9.860;HaplotypeScore=1.9648;MLEAC=8;MLEAF=1.00;MQ=35.78;MQ0=0;MQRankSum=3.282;QD=34.23;ReadPosRankSum=1.254;SB=-3.072e+03 GT:AD:DP:GQ:PL 1/1:8,46:54:99:1814,138,0 1/1:5,53:58:99:2087,130,0 1/1:6,45:51:99:1717,135,0 1/1:4,29:33:84:1092,84,0 +chr11 125889516 . G T 57.29 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.298;DP=210;Dels=0.01;FS=94.801;HaplotypeScore=5.4657;MLEAC=1;MLEAF=0.125;MQ=35.63;MQ0=0;MQRankSum=-3.725;QD=1.33;ReadPosRankSum=-0.531;SB=-6.181e+00 GT:AD:DP:GQ:PL 0/0:51,2:53:68:0,68,1490 0/0:51,3:54:76:0,76,1363 0/0:54,5:59:6:0,6,1562 0/1:34,8:42:93:93,0,821 +chr11 126142990 rs113976905 T C 246.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.180;DB;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.9666;MLEAC=1;MLEAF=0.125;MQ=38.93;MQ0=0;MQRankSum=-1.503;QD=5.74;ReadPosRankSum=0.575;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,11:43:99:283,0,1152 0/0:46,0:46:99:0,135,1835 0/0:45,0:45:99:0,132,1783 0/0:44,0:44:99:0,123,1644 +chr11 126147225 . C G 55.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.081;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=3.3643;MLEAC=3;MLEAF=0.375;MQ=32.50;MQ0=0;MQRankSum=-1.867;QD=0.97;ReadPosRankSum=-1.165;SB=-2.296e-02 GT:AD:DP:GQ:PL 0/1:21,1:22:1:1,0,280 0/0:22,0:22:39:0,39,449 0/1:21,2:23:27:27,0,263 0/1:9,3:12:67:67,0,180 +chr11 126163455 . G T 268.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.777;DP=189;Dels=0.01;FS=10.924;HaplotypeScore=1.2296;MLEAC=3;MLEAF=0.375;MQ=37.88;MQ0=0;MQRankSum=-3.054;QD=2.00;ReadPosRankSum=-0.094;SB=-3.378e+00 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,126,1709 0/1:43,6:49:84:84,0,1176 0/1:40,4:44:1:1,0,1094 0/1:31,9:40:99:223,0,759 +chr11 126294535 . G A 44.04 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.967;DP=141;Dels=0.00;FS=23.486;HaplotypeScore=6.0570;MLEAC=2;MLEAF=0.250;MQ=30.15;MQ0=0;MQRankSum=-1.579;QD=0.66;ReadPosRankSum=1.300;SB=0.393 GT:AD:DP:GQ:PL 0/1:27,5:32:68:68,0,639 0/0:31,2:33:13:0,13,713 0/0:39,2:41:17:0,17,697 0/1:31,4:35:17:17,0,648 +chr11 128359240 . C T 233.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.613;DP=291;Dels=0.00;FS=78.617;HaplotypeScore=3.1821;MLEAC=4;MLEAF=0.500;MQ=32.64;MQ0=0;MQRankSum=-3.376;QD=0.80;ReadPosRankSum=-0.645;SB=-2.102e-02 GT:AD:DP:GQ:PL 0/1:66,8:75:99:138,0,1021 0/1:61,6:67:26:26,0,1218 0/1:78,7:85:67:67,0,1266 0/1:60,4:64:45:45,0,890 +chr11 129734926 . T G 217.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.493;DP=151;Dels=0.00;FS=242.510;HaplotypeScore=6.8735;MLEAC=3;MLEAF=0.375;MQ=32.72;MQ0=0;MQRankSum=-7.402;QD=1.88;ReadPosRankSum=2.858;SB=-8.838e-01 GT:AD:DP:GQ:PL 0/1:26,10:36:99:107,0,839 0/1:30,12:42:77:77,0,947 0/1:32,6:38:77:77,0,985 0/0:31,4:35:31:0,31,949 +chr11 129744633 . G A 81.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.352;DP=346;Dels=0.01;FS=2.190;HaplotypeScore=4.0696;MLEAC=3;MLEAF=0.375;MQ=36.44;MQ0=0;MQRankSum=-6.952;QD=0.31;ReadPosRankSum=2.231;SB=-2.873e-01 GT:AD:DP:GQ:PL 0/0:79,3:82:95:0,95,2206 0/1:83,9:92:36:36,0,2325 0/1:76,9:85:13:13,0,2009 0/1:74,10:84:75:75,0,1733 +chr11 129780340 . G C 263.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.712;DP=106;Dels=0.00;FS=115.040;HaplotypeScore=0.9830;MLEAC=4;MLEAF=0.500;MQ=35.76;MQ0=0;MQRankSum=-2.563;QD=2.49;ReadPosRankSum=2.535;SB=-2.836e-02 GT:AD:DP:GQ:PL 0/1:21,4:25:70:70,0,522 0/1:23,6:29:99:106,0,632 0/1:25,7:32:99:113,0,817 0/1:18,2:20:17:17,0,538 +chr11 129802018 rs78152490 T C 983.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.009;DB;DP=191;Dels=0.00;FS=6.882;HaplotypeScore=3.1320;MLEAC=3;MLEAF=0.375;MQ=36.28;MQ0=0;MQRankSum=-2.744;QD=7.29;ReadPosRankSum=1.646;SB=-4.680e+02 GT:AD:DP:GQ:PL 0/1:28,17:45:99:490,0,841 0/0:56,0:56:99:0,156,2075 0/1:33,13:46:99:317,0,926 0/1:34,10:44:99:220,0,985 +chr11 130275312 . G T 30.81 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.873;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=1.7982;MLEAC=1;MLEAF=0.125;MQ=19.60;MQ0=0;MQRankSum=1.985;QD=7.70;ReadPosRankSum=-0.873;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,65 0/1:2,2:4:17:66,0,17 0/0:7,0:7:9:0,9,78 0/0:4,0:4:6:0,6,63 +chr11 130275967 . T G 398.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.225;DP=127;Dels=0.00;FS=22.129;HaplotypeScore=7.2907;MLEAC=4;MLEAF=0.500;MQ=29.54;MQ0=0;MQRankSum=2.924;QD=3.14;ReadPosRankSum=-3.221;SB=-1.358e-02 GT:AD:DP:GQ:PL 0/1:31,5:36:99:99,0,496 0/1:28,4:32:98:98,0,301 0/1:27,3:31:33:33,0,512 0/1:20,8:28:99:211,0,157 +chr11 130332523 . T C 34.15 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.743;DP=134;Dels=0.01;FS=3.483;HaplotypeScore=11.0722;MLEAC=2;MLEAF=0.250;MQ=28.87;MQ0=0;MQRankSum=0.217;QD=0.48;ReadPosRankSum=0.975;SB=0.521 GT:AD:DP:GQ:PL 0/1:30,4:34:51:51,0,471 0/0:26,3:29:7:0,7,420 0/0:32,0:32:69:0,69,723 0/1:34,3:37:24:24,0,423 +chr11 130542931 . A C 33.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.931;DP=77;Dels=0.00;FS=28.943;HaplotypeScore=7.3828;MLEAC=3;MLEAF=0.375;MQ=29.43;MQ0=0;MQRankSum=0.942;QD=0.53;ReadPosRankSum=1.450;SB=-8.708e-01 GT:AD:DP:GQ:PL 0/1:17,2:19:31:31,0,309 0/0:14,1:15:4:0,4,219 0/1:24,3:27:33:33,0,488 0/1:15,1:16:10:10,0,180 +chr11 130750551 . T A 256.19 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.692;DP=211;Dels=0.02;FS=77.303;HaplotypeScore=12.7694;MLEAC=5;MLEAF=0.625;MQ=15.68;MQ0=0;MQRankSum=2.949;QD=1.21;ReadPosRankSum=-0.085;SB=-5.197e-01 GT:AD:DP:GQ:PL 0/1:48,8:57:65:65,0,142 0/1:45,9:54:27:76,0,27 0/1:53,3:56:8:8,0,95 1/1:33,7:40:15:152,15,0 +chr11 130776701 rs6590537 A T 69.02 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.573;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.6608;MLEAC=3;MLEAF=0.500;MQ=32.83;MQ0=0;MQRankSum=0.573;QD=13.80;ReadPosRankSum=-1.683;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:9:0,9,110 0/1:2,1:3:31:31,0,68 1/1:0,2:2:6:79,6,0 ./. +chr11 131248806 . T A 50.02 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=1;MLEAF=0.500;MQ=26.35;MQ0=0;MQRankSum=0.358;QD=10.00;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 0/1:2,3:5:28:80,0,28 +chr11 132016197 . C T 45.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.804;DP=76;Dels=0.03;FS=0.000;HaplotypeScore=27.2914;MLEAC=3;MLEAF=0.375;MQ=22.28;MQ0=0;MQRankSum=0.496;QD=0.77;ReadPosRankSum=1.180;SB=-7.085e-02 GT:AD:DP:GQ:PL 0/1:15,1:16:18:18,0,75 0/1:18,4:22:61:61,0,94 0/1:18,1:20:9:9,0,136 0/0:16,0:16:12:0,12,120 +chr11 132016317 . G C 155.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.107;DP=138;Dels=0.01;FS=63.951;HaplotypeScore=16.5700;MLEAC=3;MLEAF=0.375;MQ=36.03;MQ0=0;MQRankSum=-3.328;QD=1.54;ReadPosRankSum=0.280;SB=0.796 GT:AD:DP:GQ:PL 0/1:30,3:33:33:33,0,778 0/1:29,5:34:29:29,0,855 0/1:27,7:34:99:137,0,636 0/0:33,3:36:28:0,28,870 +chr11 133791025 . C T 100.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.099;DP=104;Dels=0.00;FS=36.116;HaplotypeScore=4.1961;MLEAC=3;MLEAF=0.375;MQ=27.54;MQ0=0;MQRankSum=0.773;QD=1.31;ReadPosRankSum=0.855;SB=-2.078e+00 GT:AD:DP:GQ:PL 0/1:18,3:21:74:74,0,125 0/0:25,2:27:18:0,18,408 0/1:28,1:29:8:8,0,258 0/1:23,4:27:61:61,0,285 +chr11 134073547 . A G 432.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.780;DP=128;Dels=0.00;FS=64.699;HaplotypeScore=3.1758;MLEAC=4;MLEAF=0.500;MQ=37.70;MQ0=0;MQRankSum=-0.329;QD=3.38;ReadPosRankSum=-0.663;SB=-2.325e-02 GT:AD:DP:GQ:PL 0/1:27,6:33:99:151,0,734 0/1:28,3:31:25:25,0,602 0/1:35,4:39:59:59,0,999 0/1:18,7:25:99:240,0,263 +chr11 134129747 . C T 141.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.703;DP=41;Dels=0.00;FS=2.606;HaplotypeScore=0.1446;MLEAC=4;MLEAF=0.500;MQ=35.41;MQ0=0;MQRankSum=-0.547;QD=3.45;ReadPosRankSum=2.342;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,1:4:21:21,0,37 0/1:11,3:14:60:60,0,217 0/1:7,3:10:70:70,0,136 0/1:11,2:13:33:33,0,199 +chr12 432654 rs3213750 T A 188.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.098;DB;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=2.1130;MLEAC=3;MLEAF=0.375;MQ=29.49;MQ0=0;MQRankSum=-1.588;QD=5.39;ReadPosRankSum=0.455;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:48:0,48,528 0/1:10,6:16:99:133,0,256 0/1:7,4:11:71:71,0,159 0/1:5,2:7:28:28,0,62 +chr12 442620 rs4980885 C T 460.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.989;DB;DP=109;Dels=0.00;FS=3.429;HaplotypeScore=1.4948;MLEAC=3;MLEAF=0.375;MQ=28.17;MQ0=0;MQRankSum=0.885;QD=6.78;ReadPosRankSum=1.219;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/0:41,0:41:75:0,75,850 0/1:17,8:25:99:217,0,354 0/1:18,10:28:99:206,0,437 0/1:12,3:15:81:81,0,212 +chr12 461523 . T A 377.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.531;DP=61;Dels=0.00;FS=21.088;HaplotypeScore=1.1636;MLEAC=4;MLEAF=0.500;MQ=30.70;MQ0=0;MQRankSum=-0.764;QD=6.19;ReadPosRankSum=0.401;SB=3.182e-03 GT:AD:DP:GQ:PL 0/1:10,6:16:99:159,0,122 0/1:13,5:18:99:142,0,135 0/1:16,4:20:90:90,0,181 0/1:6,1:7:29:29,0,60 +chr12 494992 . T A 37 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.283;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.4882;MLEAC=1;MLEAF=0.125;MQ=35.79;MQ0=0;MQRankSum=-2.973;QD=1.06;ReadPosRankSum=-2.551;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:25,1:26:38:0,38,824 0/1:30,5:35:73:73,0,740 0/0:37,1:38:74:0,74,1163 0/0:8,0:8:21:0,21,282 +chr12 659092 . C G 49.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.065;DP=19;Dels=0.00;FS=2.869;HaplotypeScore=6.4229;MLEAC=3;MLEAF=0.375;MQ=20.39;MQ0=0;MQRankSum=0.457;QD=6.15;ReadPosRankSum=0.326;SB=2.37 GT:AD:DP:GQ:PL 0/1:3,1:4:19:19,0,57 0/0:6,0:6:6:0,6,59 1/1:1,3:4:9:74,9,0 0/0:5,0:5:3:0,3,32 +chr12 993775 . T A 163.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.754;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=7.6042;MLEAC=3;MLEAF=0.375;MQ=28.24;MQ0=0;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-0.256;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:94:94,0,155 0/1:16,3:19:69:69,0,81 0/0:16,0:16:15:0,15,132 0/1:13,2:15:44:44,0,57 +chr12 1023264 . T C 303.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.835;DP=119;Dels=0.03;FS=7.087;HaplotypeScore=3.3927;MLEAC=4;MLEAF=0.500;MQ=24.75;MQ0=0;MQRankSum=3.680;QD=2.55;ReadPosRankSum=2.336;SB=-1.046e-02 GT:AD:DP:GQ:PL 0/1:23,3:26:68:68,0,98 0/1:32,4:37:99:99,0,128 0/1:21,5:27:54:125,0,54 0/1:23,3:26:54:54,0,210 +chr12 1866799 rs2108642 C A 671.22 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.914;DB;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7214;MLEAC=6;MLEAF=0.750;MQ=21.05;MQ0=0;MQRankSum=-0.217;QD=7.14;ReadPosRankSum=-0.394;SB=-3.180e+02 GT:AD:DP:GQ:PL 0/1:13,7:20:99:117,0,175 0/1:21,5:26:5:5,0,255 1/1:2,24:26:33:379,33,0 1/1:1,21:22:21:216,21,0 +chr12 1902712 . G C 69.76 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.067;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=5.6254;MLEAC=3;MLEAF=0.500;MQ=22.65;MQ0=0;MQRankSum=-2.738;QD=3.67;ReadPosRankSum=1.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:6,3:9:11:11,0,100 0/0:9,1:10:18:0,18,186 1/1:4,5:9:12:102,12,0 +chr12 1940361 . T C 155.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.415;DP=131;Dels=0.00;FS=14.817;HaplotypeScore=7.2751;MLEAC=3;MLEAF=0.375;MQ=27.69;MQ0=0;MQRankSum=-0.029;QD=1.71;ReadPosRankSum=-0.039;SB=0.036 GT:AD:DP:GQ:PL 0/1:26,2:28:33:33,0,367 0/1:31,5:36:53:53,0,417 0/0:39,1:40:38:0,38,589 0/1:20,7:27:99:113,0,191 +chr12 1955890 rs7137876 T C 1054.28 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.999;DB;DP=46;Dels=0.02;FS=12.175;HaplotypeScore=1.1212;MLEAC=7;MLEAF=0.875;MQ=33.80;MQ0=0;MQRankSum=-1.547;QD=22.92;ReadPosRankSum=2.301;SB=4.72 GT:AD:DP:GQ:PL 1/1:2,8:10:24:302,24,0 0/1:4,7:11:13:245,0,13 1/1:4,9:13:27:338,27,0 1/1:4,7:11:21:213,21,0 +chr12 1969435 rs2370057 G C 368.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.163;DB;DP=115;Dels=0.04;FS=5.130;HaplotypeScore=7.8348;MLEAC=3;MLEAF=0.375;MQ=26.14;MQ0=0;MQRankSum=-2.636;QD=4.50;ReadPosRankSum=2.128;SB=-1.569e-02 GT:AD:DP:GQ:PL 0/1:16,11:27:99:184,0,337 0/0:32,1:33:75:0,75,769 0/1:21,10:31:99:197,0,484 0/1:13,6:19:31:31,0,219 +chr12 1995042 rs10774003 A G 1603.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.490;DB;DP=56;Dels=0.00;FS=23.444;HaplotypeScore=1.4687;MLEAC=8;MLEAF=1.00;MQ=30.84;MQ0=0;MQRankSum=2.867;QD=28.63;ReadPosRankSum=1.803;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,14:17:12:468,12,0 1/1:3,11:14:33:382,33,0 1/1:0,13:13:36:453,36,0 1/1:2,10:12:30:339,30,0 +chr12 2016550 rs112521420 A ATTGTC 7141 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.020;DB;DP=118;FS=0.000;HaplotypeScore=18.5630;MLEAC=8;MLEAF=1.00;MQ=25.93;MQ0=0;MQRankSum=-0.707;QD=60.52;ReadPosRankSum=1.354;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:7,23:26:75:1965,75,0 1/1:11,21:30:66:2010,66,0 1/1:8,21:29:82:1980,82,0 1/1:9,14:19:24:1186,24,0 +chr12 2511934 . G C 31.77 . AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.89;MQ0=0;QD=15.89;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:63,6,0 ./. ./. ./. +chr12 2595233 . G T 246.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.493;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6349;MLEAC=4;MLEAF=0.500;MQ=32.17;MQ0=0;MQRankSum=-2.436;QD=2.74;ReadPosRankSum=2.521;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:16,6:22:99:104,0,350 0/1:16,3:19:52:52,0,242 0/1:21,4:25:61:61,0,422 0/1:20,4:24:72:72,0,360 +chr12 2687692 . A G 33.25 . AC=3;AF=0.750;AN=4;BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=34.41;MQ0=0;MQRankSum=0.736;QD=11.08;ReadPosRankSum=-0.736;SB=1.75 GT:AD:DP:GQ:PL 1/1:0,1:1:3:35,3,0 ./. 0/1:1,1:2:33:33,0,33 ./. +chr12 2690895 . T G 161.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.140;DP=213;Dels=0.00;FS=82.599;HaplotypeScore=2.7575;MLEAC=2;MLEAF=0.250;MQ=36.41;MQ0=0;MQRankSum=0.333;QD=1.55;ReadPosRankSum=-0.197;SB=-1.692e+00 GT:AD:DP:GQ:PL 0/1:42,7:49:99:132,0,1160 0/0:42,2:44:35:0,35,1221 0/0:63,1:64:99:0,120,1789 0/1:49,6:55:71:71,0,1469 +chr12 2717743 . G C 122.34 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.593;DP=95;Dels=0.01;FS=55.110;HaplotypeScore=9.2637;MLEAC=4;MLEAF=0.500;MQ=17.88;MQ0=0;MQRankSum=4.051;QD=1.29;ReadPosRankSum=-0.325;SB=-1.944e+00 GT:AD:DP:GQ:PL 0/1:15,6:21:14:133,0,14 0/1:23,1:24:1:1,0,217 0/1:25,1:26:11:11,0,88 0/1:22,1:23:17:17,0,20 +chr12 2783702 . T C 36.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.298;DP=65;Dels=0.02;FS=24.738;HaplotypeScore=4.3389;MLEAC=3;MLEAF=0.375;MQ=35.18;MQ0=0;MQRankSum=-1.471;QD=0.80;ReadPosRankSum=-0.353;SB=-6.031e-01 GT:AD:DP:GQ:PL 0/1:10,2:12:28:28,0,294 0/1:16,2:18:8:8,0,425 0/0:18,1:19:15:0,15,503 0/1:13,2:15:43:43,0,253 +chr12 2795255 rs2270373 C T 723.70 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.172;DB;DP=99;Dels=0.00;FS=15.420;HaplotypeScore=0.6443;MLEAC=4;MLEAF=0.500;MQ=22.73;MQ0=0;MQRankSum=1.376;QD=7.31;ReadPosRankSum=1.044;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,16:26:40:242,0,40 1/1:4,21:25:1:254,1,0 0/1:14,11:25:99:184,0,125 0/1:16,7:23:85:85,0,195 +chr12 2851365 rs4765989 T C 87.29 . AC=5;AF=0.833;AN=6;BaseQRankSum=2.072;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5218;MLEAC=5;MLEAF=0.833;MQ=15.77;MQ0=0;MQRankSum=1.133;QD=4.59;ReadPosRankSum=0.741;SB=-3.704e+01 GT:AD:DP:GQ:PL 1/1:5,1:6:3:31,3,0 0/1:4,1:5:26:30,0,26 ./. 1/1:4,4:8:6:65,6,0 +chr12 2907825 . C A 113.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.565;DP=124;Dels=0.02;FS=0.000;HaplotypeScore=4.5558;MLEAC=4;MLEAF=0.500;MQ=32.38;MQ0=0;MQRankSum=0.494;QD=0.92;ReadPosRankSum=1.141;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,2:33:7:7,0,577 0/1:24,3:27:55:55,0,267 0/1:31,4:35:84:84,0,409 0/1:25,2:27:9:9,0,475 +chr12 2936448 . C A 75.20 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.378;DP=78;Dels=0.00;FS=2.369;HaplotypeScore=3.2100;MLEAC=2;MLEAF=0.250;MQ=34.04;MQ0=0;MQRankSum=-0.701;QD=1.88;ReadPosRankSum=1.206;SB=-1.160e+00 GT:AD:DP:GQ:PL 0/1:20,4:24:89:89,0,397 0/1:14,2:16:26:26,0,249 0/0:20,1:21:16:0,16,401 0/0:16,1:17:2:0,2,263 +chr12 2937298 rs11062370 G A 98.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.994;DB;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9834;MLEAC=1;MLEAF=0.125;MQ=33.46;MQ0=0;MQRankSum=-0.897;QD=5.50;ReadPosRankSum=-0.412;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:54:0,54,704 0/1:13,5:18:99:135,0,389 0/0:12,0:12:33:0,33,378 0/0:18,0:18:42:0,42,515 +chr12 2939971 . T G 170.34 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.299;DP=146;Dels=0.00;FS=80.995;HaplotypeScore=3.0576;MLEAC=2;MLEAF=0.250;MQ=32.14;MQ0=0;MQRankSum=0.728;QD=2.62;ReadPosRankSum=-0.674;SB=-1.651e+00 GT:AD:DP:GQ:PL 0/1:28,3:31:27:27,0,745 0/0:36,2:38:5:0,5,752 0/0:41,2:43:5:0,5,798 0/1:26,8:34:99:183,0,415 +chr12 2977837 . T A 107.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.805;DP=259;Dels=0.00;FS=119.236;HaplotypeScore=9.8831;MLEAC=2;MLEAF=0.250;MQ=35.15;MQ0=0;MQRankSum=-3.246;QD=0.79;ReadPosRankSum=-0.483;SB=-1.068e+00 GT:AD:DP:GQ:PL 0/0:54,3:58:37:0,37,1527 0/1:65,11:76:99:126,0,2062 0/0:59,5:64:24:0,24,1747 0/1:56,5:61:23:23,0,1426 +chr12 2994636 . T A 487.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.197;DP=131;Dels=0.05;FS=40.179;HaplotypeScore=16.1838;MLEAC=4;MLEAF=0.500;MQ=29.78;MQ0=0;MQRankSum=-0.063;QD=5.24;ReadPosRankSum=1.535;SB=-1.364e+01 GT:AD:DP:GQ:PL 0/1:19,5:24:99:123,0,244 0/0:34,2:36:0:0,0,544 0/1:18,9:27:99:235,0,229 0/1:31,7:38:99:169,0,271 +chr12 3686044 . G C 112.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.580;DP=276;Dels=0.00;FS=87.162;HaplotypeScore=3.9562;MLEAC=3;MLEAF=0.375;MQ=35.26;MQ0=0;MQRankSum=-4.600;QD=0.55;ReadPosRankSum=-1.089;SB=0.753 GT:AD:DP:GQ:PL 0/1:53,5:58:30:30,0,1304 0/0:67,5:72:24:0,24,1903 0/1:65,7:72:45:45,0,1589 0/1:65,9:74:81:81,0,1805 +chr12 3921358 . C G 139.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.849;DP=87;Dels=0.03;FS=24.231;HaplotypeScore=16.2235;MLEAC=4;MLEAF=0.500;MQ=29.03;MQ0=0;MQRankSum=-0.324;QD=1.61;ReadPosRankSum=1.076;SB=-7.101e+00 GT:AD:DP:GQ:PL 0/1:19,4:24:39:39,0,348 0/1:19,2:21:21:21,0,242 0/1:24,1:25:16:16,0,123 0/1:9,5:14:99:106,0,200 +chr12 4383381 . G A 40.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.123;DP=52;Dels=0.00;FS=39.525;HaplotypeScore=10.0803;MLEAC=3;MLEAF=0.375;MQ=26.66;MQ0=0;MQRankSum=1.598;QD=1.04;ReadPosRankSum=-2.116;SB=4.18 GT:AD:DP:GQ:PL 0/1:11,1:12:9:9,0,138 0/0:13,0:13:27:0,27,270 0/1:13,1:14:9:9,0,282 0/1:9,3:13:64:64,0,76 +chr12 4643220 . G C 162.39 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.313;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=24.12;MQ0=0;MQRankSum=0.368;QD=8.12;ReadPosRankSum=1.628;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,3:5:14:79,0,14 0/1:8,4:12:48:96,0,48 0/1:2,1:3:19:26,0,19 ./. +chr12 4736445 . C T 129.45 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.335;DP=78;Dels=0.00;FS=37.386;HaplotypeScore=2.0458;MLEAC=4;MLEAF=0.500;MQ=23.91;MQ0=0;MQRankSum=0.316;QD=1.66;ReadPosRankSum=-0.377;SB=-8.170e+00 GT:AD:DP:GQ:PL 0/1:13,1:14:22:22,0,51 0/1:15,3:18:2:2,0,141 0/1:28,3:31:48:48,0,313 0/1:10,5:15:58:98,0,58 +chr12 4758300 . C T 73.29 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.344;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.8971;MLEAC=5;MLEAF=0.833;MQ=26.80;MQ0=0;MQRankSum=-0.495;QD=4.58;ReadPosRankSum=-1.061;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,2:5:6:65,6,0 ./. 0/1:7,1:8:22:22,0,81 1/1:2,1:3:3:25,3,0 +chr12 4764137 rs4147672 G A 461.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.774;DB;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5711;MLEAC=1;MLEAF=0.125;MQ=31.98;MQ0=0;MQRankSum=-1.300;QD=13.59;ReadPosRankSum=1.061;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,18:34:99:498,0,320 0/0:39,0:39:99:0,102,1270 0/0:37,0:37:93:0,93,1149 0/0:31,1:32:56:0,56,1021 +chr12 4848480 . G C 240.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.839;DP=83;Dels=0.04;FS=2.989;HaplotypeScore=15.0877;MLEAC=4;MLEAF=0.500;MQ=24.71;MQ0=0;MQRankSum=-0.516;QD=2.90;ReadPosRankSum=1.283;SB=-1.196e-02 GT:AD:DP:GQ:PL 0/1:17,5:22:81:81,0,82 0/1:18,6:24:99:99,0,172 0/1:14,4:19:62:62,0,124 0/1:13,2:15:41:41,0,97 +chr12 5021348 rs2227910 G C 4482.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.055;DB;DP=190;Dels=0.01;FS=4.671;HaplotypeScore=3.4291;MLEAC=8;MLEAF=1.00;MQ=26.82;MQ0=0;MQRankSum=1.983;QD=23.59;ReadPosRankSum=3.144;SB=-2.190e+03 GT:AD:DP:GQ:PL 1/1:3,48:51:99:1364,106,0 1/1:5,42:47:87:946,87,0 1/1:3,38:41:99:1068,99,0 1/1:8,42:50:40:1104,40,0 +chr12 5141737 . C T 35.14 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.739;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=8.65;MQ0=0;MQRankSum=3.497;QD=0.63;ReadPosRankSum=-3.064;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:33,1:34:3:0,3,28 0/1:27,3:30:13:48,0,13 ./. 0/1:25,1:26:24:24,0,34 +chr12 6078616 rs2270239 T G 197.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.607;DB;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6650;MLEAC=3;MLEAF=0.375;MQ=32.07;MQ0=0;MQRankSum=-2.845;QD=5.65;ReadPosRankSum=0.583;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:39:0,39,508 0/1:9,5:14:86:86,0,194 0/1:10,5:15:95:95,0,294 0/1:4,2:6:60:60,0,88 +chr12 6140749 . G A 427.24 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.030;DP=70;Dels=0.00;FS=37.747;HaplotypeScore=12.1628;MLEAC=5;MLEAF=0.625;MQ=19.41;MQ0=0;MQRankSum=-1.309;QD=6.10;ReadPosRankSum=2.588;SB=3.06 GT:AD:DP:GQ:PL 1/1:7,10:17:18:168,18,0 0/1:10,7:17:67:67,0,80 0/1:10,10:21:74:159,0,74 0/1:8,7:15:8:78,0,8 +chr12 6464511 . T A 61.60 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.636;DP=58;Dels=0.00;FS=24.776;HaplotypeScore=4.3018;MLEAC=3;MLEAF=0.375;MQ=31.81;MQ0=0;MQRankSum=-1.285;QD=1.31;ReadPosRankSum=0.438;SB=0.332 GT:AD:DP:GQ:PL 0/1:12,2:14:22:22,0,358 0/1:11,3:14:72:72,0,175 0/1:17,2:19:10:10,0,406 0/0:11,0:11:15:0,15,168 +chr12 6572048 rs1045452 A G 308.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.441;DB;DP=34;Dels=0.00;FS=3.080;HaplotypeScore=0.4895;MLEAC=3;MLEAF=0.375;MQ=34.04;MQ0=0;MQRankSum=-1.787;QD=11.00;ReadPosRankSum=-0.162;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,3:6:26:106,0,26 0/1:4,3:7:98:98,0,107 0/1:9,6:15:99:147,0,190 0/0:6,0:6:12:0,12,169 +chr12 6632061 . G C 99.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.664;DP=210;Dels=0.00;FS=37.085;HaplotypeScore=5.7864;MLEAC=3;MLEAF=0.375;MQ=35.80;MQ0=0;MQRankSum=-0.524;QD=0.71;ReadPosRankSum=-3.530;SB=0.464 GT:AD:DP:GQ:PL 0/1:47,4:51:30:30,0,1069 0/1:47,4:52:17:17,0,1234 0/0:68,2:70:81:0,81,1789 0/1:32,5:37:96:96,0,733 +chr12 6637272 . T G 133.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.380;DP=217;Dels=0.00;FS=99.339;HaplotypeScore=1.1394;MLEAC=3;MLEAF=0.375;MQ=26.79;MQ0=0;MQRankSum=2.637;QD=0.84;ReadPosRankSum=1.128;SB=0.756 GT:AD:DP:GQ:PL 0/0:55,2:57:28:0,28,1000 0/1:53,4:57:31:31,0,909 0/1:47,7:54:99:118,0,928 0/1:44,4:48:28:28,0,760 +chr12 6658434 . C G 38.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.821;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=5.4678;MLEAC=3;MLEAF=0.375;MQ=26.47;MQ0=0;MQRankSum=0.361;QD=1.36;ReadPosRankSum=0.624;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,1:13:18:18,0,105 0/0:13,0:13:18:0,18,232 0/1:6,2:8:22:46,0,22 0/1:5,1:6:17:17,0,37 +chr12 6788440 . T C 229.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.531;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.6730;MLEAC=3;MLEAF=0.375;MQ=32.65;MQ0=0;MQRankSum=0.629;QD=2.87;ReadPosRankSum=-3.205;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,1:25:3:0,3,387 0/1:22,5:27:99:140,0,321 0/1:23,3:26:73:73,0,472 0/1:23,4:27:58:58,0,469 +chr12 6804151 . C T 57.63 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.184;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=3.7157;MLEAC=3;MLEAF=0.375;MQ=19.02;MQ0=0;MQRankSum=1.898;QD=4.43;ReadPosRankSum=-2.021;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,46 0/0:3,0:3:6:0,6,50 1/1:2,3:5:6:55,6,0 0/1:6,2:8:21:46,0,21 +chr12 6805744 . A C 62.71 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.259;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.9129;MLEAC=3;MLEAF=0.375;MQ=32.44;MQ0=0;MQRankSum=-2.721;QD=1.79;ReadPosRankSum=2.170;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,4:13:80:80,0,156 0/1:11,1:13:4:4,0,250 0/0:12,1:13:3:0,3,347 0/1:6,3:9:18:18,0,143 +chr12 6859526 . A C 92.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.681;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=4.2864;MLEAC=3;MLEAF=0.375;MQ=25.88;MQ0=0;MQRankSum=-4.783;QD=1.39;ReadPosRankSum=-1.025;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:37:37,0,291 0/1:15,7:22:50:50,0,187 0/1:20,5:25:49:49,0,419 0/0:12,1:13:21:0,21,258 +chr12 6884500 . C G 43.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.593;DP=103;Dels=0.00;FS=26.041;HaplotypeScore=8.9499;MLEAC=3;MLEAF=0.375;MQ=26.65;MQ0=0;MQRankSum=-0.061;QD=0.61;ReadPosRankSum=-1.155;SB=0.648 GT:AD:DP:GQ:PL 0/1:17,2:19:49:49,0,151 0/1:27,3:31:16:16,0,233 0/0:32,1:33:26:0,26,628 0/1:18,1:20:21:21,0,120 +chr12 6933400 . C A 168.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.593;DP=185;Dels=0.00;FS=58.326;HaplotypeScore=5.9047;MLEAC=3;MLEAF=0.375;MQ=35.98;MQ0=0;MQRankSum=-2.986;QD=1.31;ReadPosRankSum=-0.249;SB=0.759 GT:AD:DP:GQ:PL 0/1:36,5:41:60:60,0,1047 0/1:42,5:47:71:71,0,965 0/0:53,3:56:24:0,24,1298 0/1:35,6:41:81:81,0,735 +chr12 6946247 rs1129646 G T 654.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.572;DB;DP=63;Dels=0.00;FS=1.574;HaplotypeScore=4.0839;MLEAC=4;MLEAF=0.500;MQ=36.11;MQ0=0;MQRankSum=1.676;QD=10.39;ReadPosRankSum=-0.051;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:13,4:18:99:124,0,414 0/1:6,6:12:99:193,0,138 0/1:10,8:18:99:279,0,174 0/1:12,3:15:99:101,0,216 +chr12 6952854 . C A 81.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.848;DP=100;Dels=0.01;FS=25.614;HaplotypeScore=17.3762;MLEAC=4;MLEAF=0.500;MQ=28.68;MQ0=0;MQRankSum=-0.786;QD=0.82;ReadPosRankSum=0.333;SB=-1.530e-01 GT:AD:DP:GQ:PL 0/1:16,2:18:24:24,0,363 0/1:25,3:28:15:15,0,480 0/1:27,4:31:61:61,0,509 0/1:19,2:22:24:24,0,229 +chr12 6966859 . T G 1145.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.325;DP=163;Dels=0.00;FS=107.212;HaplotypeScore=14.0614;MLEAC=4;MLEAF=0.500;MQ=28.68;MQ0=0;MQRankSum=2.445;QD=7.03;ReadPosRankSum=-0.223;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/1:28,18:46:99:485,0,563 0/1:25,8:33:99:233,0,170 0/1:32,11:43:99:256,0,687 0/1:32,9:41:99:214,0,524 +chr12 6979372 . G A 203.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.240;DP=121;Dels=0.00;FS=126.832;HaplotypeScore=3.1526;MLEAC=4;MLEAF=0.500;MQ=30.73;MQ0=0;MQRankSum=-1.375;QD=1.68;ReadPosRankSum=2.265;SB=0.080 GT:AD:DP:GQ:PL 0/1:30,3:33:25:25,0,716 0/1:22,5:27:86:86,0,487 0/1:30,8:38:99:121,0,619 0/1:21,2:23:14:14,0,520 +chr12 7046231 . T G 45.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.197;DP=150;Dels=0.00;FS=39.536;HaplotypeScore=6.9765;MLEAC=1;MLEAF=0.125;MQ=23.06;MQ0=0;MQRankSum=-2.072;QD=1.25;ReadPosRankSum=1.105;SB=-4.105e+00 GT:AD:DP:GQ:PL 0/0:25,3:28:45:0,45,433 0/0:43,3:46:18:0,18,573 0/0:39,1:40:48:0,48,693 0/1:28,8:36:81:81,0,446 +chr12 7065281 rs10744724 C T 1898.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.606;DB;DP=60;Dels=0.02;FS=10.719;HaplotypeScore=0.6571;MLEAC=8;MLEAF=1.00;MQ=32.97;MQ0=0;MQRankSum=3.443;QD=31.63;ReadPosRankSum=1.810;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,8:9:24:311,24,0 1/1:2,16:18:48:578,48,0 1/1:2,13:15:12:449,12,0 1/1:0,17:17:48:599,48,0 +chr12 7065640 . T C 54.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.719;DP=118;Dels=0.02;FS=10.561;HaplotypeScore=20.7955;MLEAC=1;MLEAF=0.125;MQ=32.15;MQ0=0;MQRankSum=0.711;QD=1.77;ReadPosRankSum=-0.932;SB=-3.904e-03 GT:AD:DP:GQ:PL 0/0:22,1:23:37:0,37,710 0/0:29,0:29:60:0,60,681 0/0:33,1:34:41:0,41,768 0/1:26,4:30:91:91,0,345 +chr12 7087398 . A T 44.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.919;DP=87;Dels=0.02;FS=0.000;HaplotypeScore=17.5308;MLEAC=3;MLEAF=0.375;MQ=22.02;MQ0=0;MQRankSum=0.424;QD=0.66;ReadPosRankSum=0.156;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,2:19:12:12,0,107 0/1:14,3:17:35:35,0,122 0/1:25,4:29:40:40,0,295 0/0:18,0:20:12:0,12,116 +chr12 7187763 . A G 91.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.284;DP=72;Dels=0.00;FS=2.432;HaplotypeScore=12.9682;MLEAC=3;MLEAF=0.375;MQ=22.32;MQ0=0;MQRankSum=1.447;QD=1.49;ReadPosRankSum=0.527;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:13:18:18,0,71 0/1:19,4:23:37:37,0,175 0/1:22,3:25:78:78,0,88 0/0:11,0:11:6:0,6,58 +chr12 7287886 rs6488452 A C 1905 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.674;DB;DP=66;Dels=0.00;FS=11.004;HaplotypeScore=0.7102;MLEAC=8;MLEAF=1.00;MQ=33.16;MQ0=0;MQRankSum=0.903;QD=28.86;ReadPosRankSum=0.852;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:27:327,27,0 1/1:2,16:18:21:570,21,0 1/1:5,20:25:28:627,28,0 1/1:1,12:13:36:420,36,0 +chr12 7309987 . CT C 281.56 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.725;DP=33;FS=4.102;HaplotypeScore=13.0976;MLEAC=5;MLEAF=0.625;MQ=27.55;MQ0=0;MQRankSum=2.083;QD=8.53;RPA=2,1;RU=T;ReadPosRankSum=-0.996;SB=-1.475e-03;STR GT:AD:DP:GQ:PL 0/1:5,2:6:70:70,0,104 1/1:1,2:2:3:42,3,0 0/1:4,3:6:68:68,0,89 0/1:9,7:7:23:153,0,23 +chr12 7354825 . T A 164.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.896;DP=99;Dels=0.00;FS=17.627;HaplotypeScore=2.9233;MLEAC=3;MLEAF=0.375;MQ=29.02;MQ0=0;MQRankSum=-0.893;QD=2.35;ReadPosRankSum=-0.432;SB=0.562 GT:AD:DP:GQ:PL 0/1:18,4:22:72:72,0,240 0/1:23,4:27:32:32,0,482 0/0:26,2:29:10:0,10,566 0/1:16,5:21:99:103,0,261 +chr12 7475967 . C A 179.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.270;DP=260;Dels=0.00;FS=80.463;HaplotypeScore=2.2198;MLEAC=3;MLEAF=0.375;MQ=32.82;MQ0=0;MQRankSum=0.340;QD=0.97;ReadPosRankSum=2.715;SB=2.29 GT:AD:DP:GQ:PL 0/1:76,8:84:98:98,0,1649 0/1:66,7:73:86:86,0,1152 0/0:72,2:74:69:0,69,1615 0/1:26,3:29:39:39,0,605 +chr12 7521632 . T G 58.30 . AC=2;AF=0.333;AN=6;BaseQRankSum=-3.296;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.6462;MLEAC=2;MLEAF=0.333;MQ=32.78;MQ0=0;MQRankSum=-3.571;QD=1.82;ReadPosRankSum=2.060;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:48:48,0,383 0/0:7,1:8:21:0,21,283 0/1:11,4:15:49:49,0,359 ./. +chr12 7592139 rs10772331 G A 720.53 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.239;DB;DP=73;Dels=0.00;FS=2.180;HaplotypeScore=4.4053;MLEAC=7;MLEAF=0.875;MQ=20.55;MQ0=0;MQRankSum=2.595;QD=9.87;ReadPosRankSum=0.560;SB=-3.063e+02 GT:AD:DP:GQ:PL 0/1:21,6:27:30:30,0,106 1/1:1,15:16:30:324,30,0 1/1:4,16:20:10:348,10,0 1/1:4,6:10:6:62,6,0 +chr12 7648078 . T G 54.32 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.111;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9822;MLEAC=1;MLEAF=0.125;MQ=30.89;MQ0=0;MQRankSum=-0.940;QD=4.18;ReadPosRankSum=-0.541;SB=3.98 GT:AD:DP:GQ:PL 0/1:9,4:13:90:90,0,226 0/0:10,0:10:18:0,18,233 0/0:11,0:12:24:0,24,265 0/0:6,0:6:6:0,6,56 +chr12 7655137 rs3210140 A G 721.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.904;DB;DP=75;Dels=0.01;FS=0.956;HaplotypeScore=1.3146;MLEAC=4;MLEAF=0.500;MQ=34.14;MQ0=0;MQRankSum=-0.863;QD=9.62;ReadPosRankSum=0.662;SB=-2.640e+02 GT:AD:DP:GQ:PL 0/1:15,4:19:84:84,0,520 0/1:16,11:27:99:361,0,219 0/1:15,8:23:99:256,0,448 0/1:3,2:5:63:63,0,105 +chr12 7719395 rs61939662 T C 528.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.664;DB;DP=87;Dels=0.00;FS=2.510;HaplotypeScore=0.6680;MLEAC=3;MLEAF=0.375;MQ=23.32;MQ0=0;MQRankSum=3.210;QD=8.81;ReadPosRankSum=2.498;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,9:23:99:208,0,179 0/0:27,0:27:45:0,45,466 0/1:11,7:18:99:192,0,100 0/1:12,7:19:99:172,0,131 +chr12 7847940 rs6488591 C T 2946.84 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.376;DB;DP=97;Dels=0.00;FS=12.695;HaplotypeScore=1.3872;MLEAC=7;MLEAF=0.875;MQ=31.79;MQ0=0;MQRankSum=-0.230;QD=30.38;ReadPosRankSum=2.478;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,21:23:32:656,32,0 1/1:0,33:33:99:1217,99,0 1/1:3,26:29:46:895,46,0 0/1:4,8:12:7:221,0,7 +chr12 7868777 rs140323898 A AT 944.47 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.827;DB;DP=68;FS=4.619;HaplotypeScore=2.6679;MLEAC=6;MLEAF=0.750;MQ=27.56;MQ0=0;MQRankSum=-0.693;QD=13.89;RPA=7,8;RU=T;ReadPosRankSum=2.542;SB=-5.757e+01;STR GT:AD:DP:GQ:PL 0/1:6,10:14:1:260,0,1 0/1:9,10:16:23:287,0,23 1/1:8,12:14:2:321,2,0 1/1:5,4:8:12:126,12,0 +chr12 7922550 . G T 117.20 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.231;DP=89;Dels=0.01;FS=74.376;HaplotypeScore=10.5195;MLEAC=4;MLEAF=0.500;MQ=26.92;MQ0=0;MQRankSum=-1.925;QD=1.32;ReadPosRankSum=1.357;SB=-4.270e+00 GT:AD:DP:GQ:PL 0/1:20,2:23:20:20,0,282 0/1:23,2:25:19:19,0,228 0/1:22,1:23:3:3,0,248 0/1:11,6:17:99:116,0,135 +chr12 8084135 . T C 125.78 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.263;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=3.0990;MLEAC=4;MLEAF=0.500;MQ=20.29;MQ0=0;MQRankSum=3.335;QD=1.14;ReadPosRankSum=-1.215;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,4:24:11:89,0,11 0/1:32,4:36:27:27,0,188 0/1:23,2:25:30:30,0,154 0/1:23,1:24:22:22,0,50 +chr12 8196427 . T C 120.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.069;DP=176;Dels=0.03;FS=24.710;HaplotypeScore=18.1558;MLEAC=3;MLEAF=0.375;MQ=24.88;MQ0=0;MQRankSum=-2.062;QD=0.96;ReadPosRankSum=2.134;SB=0.563 GT:AD:DP:GQ:PL 0/1:39,5:44:49:49,0,635 0/1:32,5:37:33:33,0,503 0/0:48,3:51:10:0,10,914 0/1:32,6:38:81:81,0,387 +chr12 8200768 . C A 33.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.313;DP=77;Dels=0.00;FS=47.685;HaplotypeScore=3.3198;MLEAC=2;MLEAF=0.250;MQ=32.68;MQ0=0;MQRankSum=-3.283;QD=0.84;ReadPosRankSum=1.723;SB=3.66 GT:AD:DP:GQ:PL 0/0:14,0:14:27:0,27,360 0/0:21,2:23:33:0,33,616 0/1:19,4:23:50:50,0,554 0/1:15,2:17:25:25,0,346 +chr12 8359351 . C T 44.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.663;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=2.1587;MLEAC=2;MLEAF=0.250;MQ=15.39;MQ0=0;MQRankSum=2.412;QD=1.26;ReadPosRankSum=0.381;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:9:0,9,89 0/0:15,0:15:6:0,6,70 0/1:17,2:19:15:15,0,112 0/1:12,3:15:26:69,0,26 +chr12 8374506 . C G 121.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.029;DP=303;Dels=0.00;FS=63.881;HaplotypeScore=7.2534;MLEAC=4;MLEAF=0.500;MQ=11.08;MQ0=0;MQRankSum=3.017;QD=0.40;ReadPosRankSum=4.682;SB=-2.071e+01 GT:AD:DP:GQ:PL 0/1:56,15:71:38:38,0,126 0/1:59,11:70:10:10,0,88 0/1:68,15:83:49:49,0,144 0/1:63,15:78:62:67,0,62 +chr12 8617982 rs7315873 G A 1049.07 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.516;DB;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.2416;MLEAC=8;MLEAF=1.00;MQ=32.36;MQ0=0;MQRankSum=1.191;QD=31.79;ReadPosRankSum=1.191;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:24:293,24,0 1/1:2,10:12:2:334,2,0 1/1:0,11:11:33:395,33,0 1/1:0,2:2:6:65,6,0 +chr12 9013442 rs35198143 C T 3076.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.969;DB;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.2483;MLEAC=6;MLEAF=0.750;MQ=33.65;MQ0=0;MQRankSum=-2.668;QD=22.96;ReadPosRankSum=-0.108;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,22:41:99:678,0,604 0/1:13,20:33:99:562,0,362 1/1:3,30:33:67:1060,67,0 1/1:4,23:27:69:823,69,0 +chr12 9097902 rs1805762 C G 424.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.995;DB;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6636;MLEAC=3;MLEAF=0.375;MQ=39.71;MQ0=0;MQRankSum=0.871;QD=9.65;ReadPosRankSum=0.332;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:10:10,0,372 0/0:23,0:24:66:0,66,901 0/1:14,6:20:99:200,0,442 0/1:5,7:12:99:257,0,148 +chr12 9227193 . T A 107.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.192;DP=150;Dels=0.02;FS=84.503;HaplotypeScore=4.7309;MLEAC=3;MLEAF=0.375;MQ=30.80;MQ0=0;MQRankSum=-2.236;QD=0.97;ReadPosRankSum=0.577;SB=1.42 GT:AD:DP:GQ:PL 0/1:28,6:34:62:62,0,576 0/1:28,6:34:42:42,0,593 0/0:38,1:39:46:0,46,701 0/1:35,5:40:47:47,0,644 +chr12 9230420 . T G 422.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.956;DP=192;Dels=0.00;FS=125.368;HaplotypeScore=10.7338;MLEAC=4;MLEAF=0.500;MQ=27.95;MQ0=0;MQRankSum=-1.758;QD=2.20;ReadPosRankSum=1.762;SB=-1.216e-02 GT:AD:DP:GQ:PL 0/1:44,11:55:99:173,0,877 0/1:45,7:52:88:88,0,787 0/1:45,11:56:99:164,0,816 0/1:24,5:29:40:40,0,366 +chr12 9257041 . T C 39.03 . AC=2;AF=0.500;AN=4;BaseQRankSum=2.359;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=20.8310;MLEAC=3;MLEAF=0.750;MQ=13.95;MQ0=0;MQRankSum=1.239;QD=4.34;ReadPosRankSum=-0.289;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/0:16,0:17:3:0,3,23 1/1:5,4:9:9:75,9,0 ./. +chr12 9266207 . T A 57.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.323;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.1945;MLEAC=2;MLEAF=0.250;MQ=29.67;MQ0=0;MQRankSum=-1.135;QD=0.75;ReadPosRankSum=2.612;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,6:37:83:83,0,419 0/0:31,0:31:66:0,66,781 0/1:37,2:39:15:15,0,369 0/0:34,1:35:34:0,34,697 +chr12 9464847 . G T 156.09 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.359;DP=80;Dels=0.01;FS=11.605;HaplotypeScore=5.9306;MLEAC=4;MLEAF=0.500;MQ=13.84;MQ0=0;MQRankSum=2.965;QD=2.36;ReadPosRankSum=-1.171;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,2:14:3:0,3,22 0/1:18,4:22:19:63,0,19 1/1:18,6:24:6:58,6,0 0/1:13,6:19:10:78,0,10 +chr12 9822387 rs16914640 C G 357.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.704;DB;DP=74;Dels=0.00;FS=9.574;HaplotypeScore=0.5825;MLEAC=3;MLEAF=0.375;MQ=41.48;MQ0=0;MQRankSum=-1.042;QD=6.51;ReadPosRankSum=1.373;SB=-7.493e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:99:114,0,456 0/0:19,0:19:54:0,54,729 0/1:21,9:30:99:270,0,750 0/1:8,1:9:17:17,0,314 +chr12 9847448 rs138893047 C G 145.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.499;DB;DP=139;Dels=0.01;FS=39.759;HaplotypeScore=8.5847;MLEAC=3;MLEAF=0.375;MQ=29.27;MQ0=0;MQRankSum=-2.092;QD=1.44;ReadPosRankSum=0.918;SB=0.137 GT:AD:DP:GQ:PL 0/1:34,5:39:72:72,0,766 0/0:37,0:38:51:0,51,634 0/1:26,5:31:27:27,0,476 0/1:25,5:30:90:90,0,266 +chr12 10312776 rs17174598 G A 45.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.2892;MLEAC=4;MLEAF=1.00;MQ=25.74;MQ0=0;MQRankSum=1.026;QD=11.25;ReadPosRankSum=-1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:38,3,0 1/1:1,1:2:3:40,3,0 ./. ./. +chr12 10786757 rs3059686 T TGAA 2963.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.848;DB;DP=198;FS=0.000;HaplotypeScore=93.3351;MLEAC=4;MLEAF=0.500;MQ=29.23;MQ0=0;MQRankSum=1.850;QD=14.97;RPA=2,3;RU=GAA;ReadPosRankSum=0.541;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:23,9:35:99:359,0,397 0/1:14,27:41:99:1138,0,105 0/1:30,17:52:99:873,0,469 0/1:23,15:37:99:645,0,312 +chr12 10871667 rs33016 A G 1114.78 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.272;DB;DP=52;Dels=0.00;FS=23.100;HaplotypeScore=1.0492;MLEAC=8;MLEAF=1.00;MQ=25.54;MQ0=0;MQRankSum=2.056;QD=21.44;ReadPosRankSum=2.414;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,17:19:16:378,16,0 1/1:2,13:15:9:379,9,0 1/1:1,13:14:33:365,33,0 1/1:1,3:4:3:31,3,0 +chr12 11117980 rs11054098 T C 280.52 . AC=3;AF=0.500;AN=6;BaseQRankSum=3.631;DB;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.6630;MLEAC=3;MLEAF=0.500;MQ=30.40;MQ0=0;MQRankSum=-0.462;QD=10.39;ReadPosRankSum=0.708;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:30:0,30,336 1/1:2,9:11:18:218,18,0 0/1:12,4:16:99:107,0,310 ./. +chr12 11214145 rs2708381 C T 1282.84 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.635;DB;DP=309;Dels=0.00;FS=0.894;HaplotypeScore=0.8662;MLEAC=4;MLEAF=0.500;MQ=15.67;MQ0=0;MQRankSum=7.431;QD=6.11;ReadPosRankSum=2.717;SB=-5.567e+02 GT:AD:DP:GQ:PL 0/0:99,0:99:15:0,15,185 1/1:6,72:78:32:811,32,0 0/1:58,33:91:50:329,0,50 0/1:29,12:41:99:191,0,111 +chr12 11332886 . A T 42.22 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.000;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=39.41;MQ0=0;MQRankSum=-1.026;QD=14.07;ReadPosRankSum=-1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:79,6,0 0/0:1,0:1:3:0,3,43 0/0:1,0:1:3:0,3,23 ./. +chr12 11506473 rs61930109 C G 100.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.256;DB;DP=299;Dels=0.00;FS=6.499;HaplotypeScore=12.4943;MLEAC=2;MLEAF=0.250;MQ=11.95;MQ0=0;MQRankSum=3.913;QD=0.83;ReadPosRankSum=1.028;SB=-2.582e+01 GT:AD:DP:GQ:PL 0/1:37,5:43:71:120,0,71 0/0:84,1:86:24:0,24,274 0/0:89,3:92:30:0,30,323 0/1:74,2:77:22:22,0,276 +chr12 11667024 rs10772481 G C 137.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.771;DB;DP=28;Dels=0.00;FS=2.758;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=30.73;MQ0=0;MQRankSum=1.260;QD=6.89;ReadPosRankSum=0.476;SB=-3.888e+01 GT:AD:DP:GQ:PL 0/1:4,2:6:59:59,0,107 0/1:10,4:14:99:119,0,172 0/0:7,0:7:21:0,21,231 0/0:1,0:1:3:0,3,39 +chr12 12037545 . T G 70.16 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.453;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=7.7208;MLEAC=2;MLEAF=0.250;MQ=28.72;MQ0=0;MQRankSum=0.037;QD=2.60;ReadPosRankSum=1.006;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,1:13:17:27,0,17 0/0:13,0:13:9:0,9,97 0/0:15,0:15:12:0,12,114 0/1:9,4:13:15:84,0,15 +chr12 12509957 . G C 69.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.922;DP=15;Dels=0.00;FS=6.264;HaplotypeScore=1.2434;MLEAC=6;MLEAF=1.00;MQ=16.41;MQ0=0;MQRankSum=2.017;QD=6.92;ReadPosRankSum=-0.922;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:3:32,3,0 1/1:2,1:3:3:34,3,0 ./. 1/1:3,1:4:3:38,3,0 +chr12 13208798 . G C 252.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.550;DP=145;Dels=0.01;FS=105.468;HaplotypeScore=6.3985;MLEAC=3;MLEAF=0.375;MQ=34.80;MQ0=0;MQRankSum=-2.652;QD=2.18;ReadPosRankSum=2.441;SB=0.679 GT:AD:DP:GQ:PL 0/1:33,5:38:77:77,0,987 0/1:37,7:44:99:113,0,1026 0/1:26,6:32:99:106,0,677 0/0:27,2:29:17:0,17,823 +chr12 13211212 rs6488582 G A 146.85 . AC=6;AF=1.00;AN=6;DB;DP=10;Dels=0.00;FS=6.532;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=21.48;MQ0=0;QD=18.36;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:9:98,9,0 1/1:0,2:2:6:60,6,0 1/1:0,1:1:3:25,3,0 ./. +chr12 13248445 rs2291396 C A 79.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.240;DB;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.2314;MLEAC=1;MLEAF=0.125;MQ=41.26;MQ0=0;MQRankSum=-2.133;QD=3.20;ReadPosRankSum=0.747;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,5:25:99:116,0,706 0/0:31,0:31:87:0,87,1200 0/0:37,0:37:99:0,105,1414 0/0:24,0:24:69:0,69,955 +chr12 13366504 rs34412222 G A 874.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.960;DB;DP=256;Dels=0.01;FS=2.580;HaplotypeScore=4.5837;MLEAC=3;MLEAF=0.375;MQ=35.45;MQ0=0;MQRankSum=-4.861;QD=4.53;ReadPosRankSum=-1.491;SB=-2.890e+02 GT:AD:DP:GQ:PL 0/1:52,12:65:99:260,0,1576 0/0:63,0:63:99:0,177,2280 0/1:49,22:71:99:527,0,1393 0/1:47,8:55:99:131,0,1196 +chr12 13761829 rs138425654 CA C 555.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.297;DB;DP=89;FS=0.000;HaplotypeScore=5.3678;MLEAC=3;MLEAF=0.375;MQ=38.64;MQ0=0;MQRankSum=-0.507;QD=8.29;RPA=3,2;RU=A;ReadPosRankSum=2.017;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:21,0:21:57:0,57,773 0/1:24,4:28:99:169,0,698 0/1:13,5:18:99:199,0,321 0/1:13,5:18:99:240,0,280 +chr12 14927421 . A T 68.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.077;DP=79;Dels=0.00;FS=30.846;HaplotypeScore=0.7449;MLEAC=2;MLEAF=0.250;MQ=34.25;MQ0=0;MQRankSum=-0.189;QD=2.29;ReadPosRankSum=0.507;SB=-1.030e+00 GT:AD:DP:GQ:PL 0/1:15,3:18:67:67,0,380 0/0:24,1:25:17:0,17,562 0/0:23,1:24:18:0,18,608 0/1:10,2:12:43:43,0,214 +chr12 15091384 . G T 219.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.384;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=6.2108;MLEAC=3;MLEAF=0.375;MQ=25.83;MQ0=0;MQRankSum=0.407;QD=3.13;ReadPosRankSum=4.315;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:97:109,0,97 0/1:21,4:25:22:22,0,283 0/1:16,6:23:99:131,0,131 0/0:9,0:9:9:0,9,81 +chr12 15095323 . A C 73.28 . AC=5;AF=0.833;AN=6;BaseQRankSum=-0.731;DP=8;Dels=0.00;FS=3.680;HaplotypeScore=0.3263;MLEAC=5;MLEAF=0.833;MQ=24.28;MQ0=0;MQRankSum=0.731;QD=12.21;ReadPosRankSum=0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:23:50,0,23 ./. 1/1:0,1:1:3:38,3,0 1/1:0,1:1:3:23,3,0 +chr12 15807367 rs4763427 T C 241.70 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.931;DB;DP=13;Dels=0.00;FS=5.643;HaplotypeScore=1.0516;MLEAC=6;MLEAF=1.00;MQ=27.60;MQ0=0;MQRankSum=2.262;QD=20.14;ReadPosRankSum=-1.106;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:79,6,0 1/1:2,4:6:12:159,12,0 1/1:2,2:4:3:40,3,0 ./. +chr12 15818817 . G A 38.37 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.156;DP=113;Dels=0.00;FS=4.681;HaplotypeScore=2.4518;MLEAC=2;MLEAF=0.250;MQ=33.76;MQ0=0;MQRankSum=-3.187;QD=0.66;ReadPosRankSum=2.392;SB=0.041 GT:AD:DP:GQ:PL 0/1:21,4:25:69:69,0,343 0/0:30,2:32:10:0,10,665 0/1:29,4:33:9:9,0,543 0/0:23,0:23:33:0,33,423 +chr12 15823708 . A G 48.76 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.929;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.6838;MLEAC=5;MLEAF=0.625;MQ=26.62;MQ0=0;MQRankSum=1.774;QD=2.03;ReadPosRankSum=0.386;SB=3.98 GT:AD:DP:GQ:PL 0/1:7,1:8:21:21,0,45 0/1:8,1:9:17:17,0,58 0/1:4,1:6:17:21,0,17 1/1:0,1:1:3:32,3,0 +chr12 16562163 rs148620215 G C 358.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.733;DB;DP=177;Dels=0.00;FS=16.054;HaplotypeScore=0.2499;MLEAC=1;MLEAF=0.125;MQ=36.50;MQ0=0;MQRankSum=-3.461;QD=7.64;ReadPosRankSum=-0.886;SB=-2.012e+00 GT:AD:DP:GQ:PL 0/1:30,17:47:99:395,0,1015 0/0:58,0:58:99:0,153,1999 0/0:52,0:52:99:0,141,1832 0/0:20,0:20:60:0,60,795 +chr12 17142862 . A T 166.48 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.919;DP=39;Dels=0.00;FS=8.263;HaplotypeScore=1.0221;MLEAC=3;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=1.956;QD=4.62;ReadPosRankSum=0.118;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,5:12:10:125,0,10 0/1:13,3:16:50:50,0,104 0/1:7,1:8:30:30,0,43 ./. +chr12 18793524 . A T 60.12 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.212;DP=45;Dels=0.04;FS=3.140;HaplotypeScore=12.8117;MLEAC=4;MLEAF=0.667;MQ=22.36;MQ0=0;MQRankSum=0.000;QD=1.40;ReadPosRankSum=1.482;SB=0.042 GT:AD:DP:GQ:PL 0/1:11,2:13:19:23,0,19 1/1:9,4:13:6:58,6,0 0/1:14,1:15:19:19,0,40 ./. +chr12 19459323 . C T 266.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.636;DP=101;Dels=0.00;FS=79.183;HaplotypeScore=4.5973;MLEAC=4;MLEAF=0.500;MQ=25.56;MQ0=0;MQRankSum=2.680;QD=2.64;ReadPosRankSum=1.382;SB=-1.196e-02 GT:AD:DP:GQ:PL 0/1:21,4:25:72:72,0,295 0/1:15,2:17:43:43,0,158 0/1:30,7:37:99:144,0,435 0/1:19,3:22:50:50,0,303 +chr12 19459591 rs704161 G A 2199.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.700;DB;DP=114;Dels=0.01;FS=3.134;HaplotypeScore=1.2004;MLEAC=8;MLEAF=1.00;MQ=26.42;MQ0=0;MQRankSum=1.635;QD=19.30;ReadPosRankSum=0.631;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,26:28:36:436,36,0 1/1:1,26:27:48:622,48,0 1/1:1,29:30:48:575,48,0 1/1:3,25:28:48:606,48,0 +chr12 19610455 . T C 36.44 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.486;DP=252;Dels=0.00;FS=22.655;HaplotypeScore=4.4100;MLEAC=4;MLEAF=0.500;MQ=13.49;MQ0=0;MQRankSum=3.577;QD=0.14;ReadPosRankSum=-0.723;SB=-1.400e+00 GT:AD:DP:GQ:PL 0/1:53,1:54:7:7,0,142 0/1:69,4:73:10:10,0,130 0/1:67,3:71:53:53,0,148 0/1:53,1:54:7:7,0,100 +chr12 21175691 rs10841725 A G 121.52 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.259;DB;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9868;MLEAC=3;MLEAF=0.750;MQ=16.10;MQ0=0;MQRankSum=1.727;QD=3.57;ReadPosRankSum=2.489;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,2:22:20:20,0,47 1/1:4,8:12:15:139,15,0 ./. ./. +chr12 21327670 . C A 52.10 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.598;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.1695;MLEAC=2;MLEAF=0.333;MQ=23.84;MQ0=0;MQRankSum=1.453;QD=1.74;ReadPosRankSum=0.655;SB=15.93 GT:AD:DP:GQ:PL 0/1:12,1:13:29:29,0,46 0/0:20,0:21:3:0,3,22 0/1:14,3:17:60:60,0,124 ./. +chr12 21369964 rs4149071 T C 124.16 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.114;DB;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=29.90;MQ0=0;MQRankSum=0.701;QD=9.55;ReadPosRankSum=0.277;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,6:13:75:160,0,75 0/0:13,0:13:21:0,21,229 0/0:17,0:17:42:0,42,536 0/0:3,0:3:9:0,9,125 +chr12 21531437 rs5484 C T 692.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.793;DB;DP=68;Dels=0.00;FS=2.783;HaplotypeScore=0.9295;MLEAC=4;MLEAF=0.500;MQ=36.90;MQ0=0;MQRankSum=-1.040;QD=10.19;ReadPosRankSum=-0.483;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,10:22:99:313,0,327 0/1:13,5:18:99:137,0,372 0/1:15,8:23:99:261,0,420 0/1:4,1:5:24:24,0,134 +chr12 21590788 rs2110165 C A 94.78 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.637;DB;DP=14;Dels=0.00;FS=2.881;HaplotypeScore=0.3670;MLEAC=5;MLEAF=0.625;MQ=20.36;MQ0=0;MQRankSum=2.637;QD=8.62;ReadPosRankSum=1.599;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,1:4:3:38,3,0 0/1:1,1:2:17:25,0,17 1/1:3,2:5:6:76,6,0 0/0:3,0:3:6:0,6,55 +chr12 21628791 rs3752648 T C 1431.21 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.987;DB;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.4945;MLEAC=7;MLEAF=0.875;MQ=33.29;MQ0=0;MQRankSum=-4.261;QD=24.26;ReadPosRankSum=-0.128;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,14:16:42:482,42,0 0/1:11,8:19:99:262,0,362 1/1:2,18:21:54:660,54,0 1/1:1,2:3:6:71,6,0 +chr12 21681925 rs75529466 G A 1124.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.528;DB;DP=215;Dels=0.01;FS=87.903;HaplotypeScore=24.2064;MLEAC=4;MLEAF=0.500;MQ=27.06;MQ0=0;MQRankSum=-4.365;QD=5.23;ReadPosRankSum=2.439;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:40,26:66:99:519,0,295 0/1:46,10:56:99:215,0,399 0/1:45,16:61:99:312,0,478 0/1:17,12:29:99:121,0,136 +chr12 21729065 rs11046126 G T 277.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.578;DB;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.4946;MLEAC=2;MLEAF=0.250;MQ=40.53;MQ0=0;MQRankSum=-0.202;QD=8.67;ReadPosRankSum=0.581;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:36:0,36,498 0/1:9,6:15:99:209,0,331 0/1:13,4:17:99:110,0,470 0/0:9,0:9:18:0,18,252 +chr12 21733121 rs2126887 T G 36.01 . AC=4;AF=1.00;AN=4;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=21.44;MQ0=0;QD=18.01;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:32,3,0 1/1:0,1:1:3:37,3,0 ./. ./. +chr12 21789968 rs1677134 G T 4934.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.400;DB;DP=154;Dels=0.01;FS=2.361;HaplotypeScore=1.6703;MLEAC=8;MLEAF=1.00;MQ=32.94;MQ0=0;MQRankSum=-1.464;QD=32.04;ReadPosRankSum=3.354;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:2,42:44:58:1413,58,0 1/1:2,43:45:91:1464,91,0 1/1:3,49:52:99:1642,113,0 1/1:0,12:12:36:415,36,0 +chr12 21970019 rs2638441 C T 546.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.504;DB;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=0.4999;MLEAC=3;MLEAF=0.375;MQ=35.70;MQ0=0;MQRankSum=-2.036;QD=10.32;ReadPosRankSum=0.075;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,105,1282 0/1:17,11:28:99:311,0,597 0/1:11,6:17:99:181,0,394 0/1:5,3:8:85:98,0,85 +chr12 22005003 rs2307024 T G 1158.40 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.324;DB;DP=87;Dels=0.00;FS=5.160;HaplotypeScore=0.2495;MLEAC=4;MLEAF=0.500;MQ=37.45;MQ0=0;MQRankSum=-0.516;QD=21.45;ReadPosRankSum=0.453;SB=-7.784e+01 GT:AD:DP:GQ:PL 1/1:2,21:23:8:788,8,0 0/0:33,0:33:78:0,78,1016 0/1:11,10:21:99:318,0,278 0/1:7,3:10:99:99,0,160 +chr12 22005258 rs117514003 G T 292.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.753;DB;DP=133;Dels=0.04;FS=2.737;HaplotypeScore=8.7223;MLEAC=3;MLEAF=0.375;MQ=32.06;MQ0=0;MQRankSum=-4.402;QD=3.37;ReadPosRankSum=-0.448;SB=-5.704e+01 GT:AD:DP:GQ:PL 0/1:25,9:34:99:133,0,630 0/0:46,0:46:99:0,126,1558 0/1:31,11:42:99:182,0,851 0/1:5,1:6:21:21,0,109 +chr12 22017422 rs697250 A G 4574.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.721;DB;DP=134;Dels=0.01;FS=24.461;HaplotypeScore=4.7331;MLEAC=8;MLEAF=1.00;MQ=35.86;MQ0=0;MQRankSum=1.030;QD=34.13;ReadPosRankSum=3.921;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:90:1161,90,0 1/1:4,40:44:93:1470,93,0 1/1:3,33:37:68:1271,68,0 1/1:2,18:20:27:672,27,0 +chr12 22354921 rs704219 A G 3356.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=5.454;DB;DP=121;Dels=0.00;FS=26.620;HaplotypeScore=1.8471;MLEAC=6;MLEAF=0.750;MQ=34.15;MQ0=0;MQRankSum=4.041;QD=27.74;ReadPosRankSum=3.871;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:6,27:33:11:918,11,0 0/1:9,30:39:99:1006,0,109 1/1:3,29:32:21:1023,21,0 0/1:5,12:17:24:409,0,24 +chr12 22354977 . T A 55.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.578;DP=106;Dels=0.00;FS=7.262;HaplotypeScore=4.5057;MLEAC=4;MLEAF=0.500;MQ=27.08;MQ0=0;MQRankSum=-2.228;QD=0.53;ReadPosRankSum=3.306;SB=-1.632e-02 GT:AD:DP:GQ:PL 0/1:30,3:33:28:28,0,438 0/1:23,5:28:41:41,0,406 0/1:32,3:35:18:18,0,296 0/1:8,2:10:11:11,0,88 +chr12 22439594 . T C 48.81 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.538;DP=55;Dels=0.02;FS=2.840;HaplotypeScore=3.1085;MLEAC=5;MLEAF=0.625;MQ=22.57;MQ0=0;MQRankSum=-0.255;QD=0.89;ReadPosRankSum=2.916;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:34:34,0,81 0/1:13,1:15:12:12,0,75 0/1:14,3:17:19:19,0,58 1/1:4,1:5:3:26,3,0 +chr12 23687106 . T G 374.44 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.730;DP=71;Dels=0.04;FS=3.100;HaplotypeScore=13.1226;MLEAC=7;MLEAF=0.875;MQ=17.87;MQ0=0;MQRankSum=3.530;QD=5.27;ReadPosRankSum=2.450;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,5:23:52:81,0,52 1/1:11,11:22:21:168,21,0 1/1:11,4:15:12:115,12,0 1/1:3,5:8:6:54,6,0 +chr12 25257251 . A C 31.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.690;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=1.5651;MLEAC=4;MLEAF=0.500;MQ=34.47;MQ0=0;MQRankSum=-2.159;QD=0.71;ReadPosRankSum=1.376;SB=-1.135e+00 GT:AD:DP:GQ:PL 0/1:18,2:20:22:22,0,387 0/0:21,2:23:0:0,0,616 0/1:17,2:19:23:23,0,429 0/1:3,1:4:26:26,0,35 +chr12 25261735 rs859146 G T 2699.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.699;DB;DP=84;Dels=0.00;FS=21.217;HaplotypeScore=1.3310;MLEAC=8;MLEAF=1.00;MQ=33.14;MQ0=0;MQRankSum=4.046;QD=32.14;ReadPosRankSum=0.265;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:57:710,57,0 1/1:4,22:26:66:822,66,0 1/1:3,24:27:69:880,69,0 1/1:3,9:12:27:327,27,0 +chr12 25588696 rs77698706 C A 32.51 . AC=1;AF=0.167;AN=6;BaseQRankSum=1.274;DB;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.167;MQ=31.98;MQ0=0;MQRankSum=-0.594;QD=6.50;ReadPosRankSum=-1.783;SB=0.374 GT:AD:DP:GQ:PL 0/0:5,0:5:9:0,9,125 0/1:3,2:5:67:67,0,70 0/0:6,0:6:15:0,15,187 ./. +chr12 25656498 rs76163149 T C 38.10 . AC=1;AF=0.167;AN=6;BaseQRankSum=-0.107;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.167;MQ=31.97;MQ0=0;MQRankSum=0.967;QD=6.35;ReadPosRankSum=-0.322;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:69:72,0,69 0/0:5,0:5:15:0,15,179 0/0:2,0:2:3:0,3,41 ./. +chr12 26647116 . G A 33.51 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.983;DP=78;Dels=0.00;FS=29.643;HaplotypeScore=1.4097;MLEAC=2;MLEAF=0.250;MQ=33.94;MQ0=0;MQRankSum=-1.860;QD=0.63;ReadPosRankSum=-1.351;SB=-2.511e+00 GT:AD:DP:GQ:PL 0/0:17,1:18:9:0,9,440 0/1:27,2:29:9:9,0,633 0/1:18,6:24:64:64,0,468 0/0:7,0:7:15:0,15,184 +chr12 26810777 rs2291264 T C 481.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.131;DB;DP=190;Dels=0.01;FS=0.000;HaplotypeScore=2.3296;MLEAC=1;MLEAF=0.125;MQ=39.71;MQ0=0;MQRankSum=-2.299;QD=9.64;ReadPosRankSum=2.243;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,162,2158 0/1:32,17:49:99:518,0,1106 0/0:55,0:55:99:0,165,2219 0/0:29,0:29:87:0,87,1185 +chr12 27068983 rs35037404 A T 389.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.943;DB;DP=102;Dels=0.00;FS=1.154;HaplotypeScore=1.7115;MLEAC=1;MLEAF=0.125;MQ=32.33;MQ0=0;MQRankSum=1.742;QD=14.44;ReadPosRankSum=0.625;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/0:16,0:16:48:0,48,562 0/1:14,13:27:99:426,0,258 0/0:46,0:46:99:0,129,1492 0/0:13,0:13:36:0,36,379 +chr12 27110761 . C T 73.32 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.702;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=6.5249;MLEAC=3;MLEAF=0.500;MQ=21.09;MQ0=0;MQRankSum=1.362;QD=2.72;ReadPosRankSum=0.206;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,4:10:29:44,0,29 0/1:9,3:12:19:45,0,19 0/1:3,1:4:23:23,0,25 ./. +chr12 27116226 . A T 49.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.284;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.8492;MLEAC=1;MLEAF=0.125;MQ=27.85;MQ0=0;MQRankSum=-0.284;QD=1.58;ReadPosRankSum=0.995;SB=4.98 GT:AD:DP:GQ:PL 0/1:7,4:12:60:81,0,60 0/0:12,0:12:9:0,9,94 0/1:17,1:19:5:5,0,150 0/0:8,0:8:3:0,3,40 +chr12 27180357 . G T 56.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.717;DP=103;Dels=0.01;FS=14.212;HaplotypeScore=4.5923;MLEAC=4;MLEAF=0.500;MQ=20.63;MQ0=0;MQRankSum=2.990;QD=0.55;ReadPosRankSum=0.178;SB=-6.993e-01 GT:AD:DP:GQ:PL 0/1:32,1:33:22:22,0,45 0/1:28,2:30:55:55,0,78 0/1:29,2:31:5:5,0,114 0/1:7,1:8:16:16,0,17 +chr12 27292909 . G A 107.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.180;DP=79;Dels=0.03;FS=2.442;HaplotypeScore=2.0116;MLEAC=4;MLEAF=0.500;MQ=20.67;MQ0=0;MQRankSum=1.656;QD=1.36;ReadPosRankSum=-1.304;SB=-1.189e-02 GT:AD:DP:GQ:PL 0/1:15,1:16:18:22,0,18 0/1:22,3:25:15:59,0,15 0/1:22,4:26:47:47,0,156 0/1:9,1:10:20:22,0,20 +chr12 27533367 rs4964060 A G 2499.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.097;DB;DP=101;Dels=0.00;FS=27.694;HaplotypeScore=4.4493;MLEAC=8;MLEAF=1.00;MQ=33.22;MQ0=0;MQRankSum=3.217;QD=24.75;ReadPosRankSum=1.320;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:7,19:26:25:610,25,0 1/1:9,18:27:51:629,51,0 1/1:8,19:27:57:712,57,0 1/1:5,16:21:45:588,45,0 +chr12 27745476 rs10842945 C T 1776.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.731;DB;DP=132;Dels=0.00;FS=14.147;HaplotypeScore=8.6693;MLEAC=5;MLEAF=0.625;MQ=32.73;MQ0=0;MQRankSum=2.326;QD=13.46;ReadPosRankSum=1.265;SB=-2.650e+02 GT:AD:DP:GQ:PL 0/1:23,14:37:99:432,0,596 1/1:5,27:33:66:895,66,0 0/1:20,17:37:99:470,0,479 0/1:20,5:25:25:25,0,407 +chr12 29423460 rs2216854 G A 804.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.182;DB;DP=128;Dels=0.02;FS=4.264;HaplotypeScore=8.9901;MLEAC=3;MLEAF=0.375;MQ=32.85;MQ0=0;MQRankSum=-1.273;QD=8.30;ReadPosRankSum=0.700;SB=-3.500e+02 GT:AD:DP:GQ:PL 0/1:22,9:31:99:185,0,497 0/0:30,0:30:75:0,75,936 0/1:19,15:34:99:458,0,443 0/1:23,8:31:99:205,0,632 +chr12 29423583 rs2194519 A G 462.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.314;DB;DP=77;Dels=0.04;FS=3.496;HaplotypeScore=2.0446;MLEAC=3;MLEAF=0.375;MQ=41.65;MQ0=0;MQRankSum=-0.705;QD=7.84;ReadPosRankSum=0.496;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:13,4:17:99:123,0,294 0/0:18,0:18:51:0,51,681 0/1:15,5:20:99:181,0,199 0/1:13,6:19:99:202,0,340 +chr12 31256021 . C G 30.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=-1.679;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.9650;MLEAC=4;MLEAF=1.00;MQ=11.56;MQ0=0;MQRankSum=1.007;QD=1.11;ReadPosRankSum=0.634;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:12,3:15:3:28,3,0 1/1:8,4:12:3:35,3,0 +chr12 31944804 . G C 463.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.240;DP=186;Dels=0.00;FS=84.357;HaplotypeScore=3.8614;MLEAC=4;MLEAF=0.500;MQ=19.35;MQ0=0;MQRankSum=5.992;QD=2.49;ReadPosRankSum=-0.098;SB=-2.154e+00 GT:AD:DP:GQ:PL 0/1:41,5:46:99:113,0,135 0/1:39,7:47:99:120,0,288 0/1:45,4:49:55:55,0,368 0/1:36,8:44:99:218,0,203 +chr12 32135441 rs3759301 T C 3545.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.330;DB;DP=111;Dels=0.01;FS=10.256;HaplotypeScore=1.4851;MLEAC=8;MLEAF=1.00;MQ=35.80;MQ0=0;MQRankSum=3.398;QD=31.94;ReadPosRankSum=3.305;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:2,20:22:60:778,60,0 1/1:5,33:38:41:1199,41,0 1/1:4,30:34:60:1114,60,0 1/1:4,12:16:36:454,36,0 +chr12 32480464 . G T 46.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.900;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.0565;MLEAC=3;MLEAF=0.375;MQ=38.52;MQ0=0;MQRankSum=-4.734;QD=0.43;ReadPosRankSum=-2.244;SB=-4.950e-01 GT:AD:DP:GQ:PL 0/1:29,3:33:20:20,0,763 0/1:33,6:39:59:59,0,827 0/0:43,3:46:35:0,35,1299 0/1:34,3:37:10:10,0,942 +chr12 32903704 . G A 36.47 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.809;DP=156;Dels=0.00;FS=67.054;HaplotypeScore=5.5668;MLEAC=2;MLEAF=0.250;MQ=37.55;MQ0=0;MQRankSum=-4.578;QD=0.55;ReadPosRankSum=-1.091;SB=-2.900e+00 GT:AD:DP:GQ:PL 0/0:39,3:42:28:0,28,1197 0/1:41,6:47:68:68,0,1042 0/0:45,3:48:44:0,44,1469 0/1:17,2:19:8:8,0,513 +chr12 32908621 . T C 133.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.280;DP=169;Dels=0.01;FS=48.815;HaplotypeScore=27.8157;MLEAC=4;MLEAF=0.500;MQ=26.42;MQ0=0;MQRankSum=-2.921;QD=0.79;ReadPosRankSum=-1.045;SB=-2.880e-01 GT:AD:DP:GQ:PL 0/1:42,4:47:11:11,0,664 0/1:38,5:44:49:49,0,597 0/1:37,6:43:62:62,0,615 0/1:28,6:34:54:54,0,272 +chr12 32945495 rs7956824 C T 58.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.002;DB;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8973;MLEAC=1;MLEAF=0.125;MQ=32.18;MQ0=0;MQRankSum=-1.283;QD=2.56;ReadPosRankSum=1.101;SB=-3.010e+00 GT:AD:DP:GQ:PL 0/1:17,6:23:95:95,0,426 0/0:25,0:26:69:0,69,871 0/0:26,0:26:69:0,69,818 0/0:17,0:17:33:0,33,413 +chr12 34362425 rs78272173 C A 2249.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.466;DB;DP=333;Dels=0.01;FS=3.119;HaplotypeScore=78.7111;MLEAC=4;MLEAF=0.500;MQ=20.26;MQ0=0;MQRankSum=-0.732;QD=6.76;ReadPosRankSum=-1.711;SB=-6.927e+02 GT:AD:DP:GQ:PL 0/1:33,44:78:99:653,0,214 0/1:38,47:89:99:568,0,154 0/1:34,48:84:99:733,0,151 0/1:53,27:80:99:338,0,256 +chr12 38444869 rs112786845 C G 163.66 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.580;DB;DP=13;Dels=0.00;FS=6.154;HaplotypeScore=0.2447;MLEAC=6;MLEAF=1.00;MQ=20.06;MQ0=0;MQRankSum=2.166;QD=14.88;ReadPosRankSum=0.296;SB=-6.700e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:69,6,0 ./. 1/1:1,3:4:6:65,6,0 1/1:3,2:5:6:66,6,0 +chr12 38536777 rs78977262 T C 79.67 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.606;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.2217;MLEAC=6;MLEAF=1.00;MQ=13.47;MQ0=0;MQRankSum=1.944;QD=5.69;ReadPosRankSum=-1.099;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:6:56,6,0 1/1:2,3:5:3:26,3,0 ./. 1/1:1,3:4:3:33,3,0 +chr12 38595325 . C G 50.77 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.374;DP=63;Dels=0.00;FS=5.384;HaplotypeScore=3.1936;MLEAC=3;MLEAF=0.375;MQ=16.31;MQ0=0;MQRankSum=1.663;QD=1.02;ReadPosRankSum=-0.323;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,2:13:12:0,12,135 0/1:10,6:17:12:12,0,109 0/1:8,7:17:22:67,0,22 0/1:10,6:16:14:14,0,76 +chr12 38710583 rs7296576 C T 1133.03 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.476;DB;DP=101;Dels=0.00;FS=5.130;HaplotypeScore=1.7438;MLEAC=6;MLEAF=0.750;MQ=20.36;MQ0=0;MQRankSum=3.192;QD=11.22;ReadPosRankSum=-0.335;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,9:25:91:213,0,91 0/1:13,12:25:21:152,0,21 1/1:1,23:24:14:363,14,0 1/1:1,26:27:42:451,42,0 +chr12 38714175 . C G 47.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.280;DP=156;Dels=0.00;FS=10.833;HaplotypeScore=0.2492;MLEAC=3;MLEAF=0.375;MQ=10.77;MQ0=0;MQRankSum=3.276;QD=0.43;ReadPosRankSum=-2.014;SB=0.400 GT:AD:DP:GQ:PL 0/1:42,1:43:22:22,0,27 0/1:49,2:51:37:37,0,98 0/0:44,0:44:9:0,9,80 1/1:16,2:18:3:32,3,0 +chr12 39233826 . C A 30.18 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.433;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=2.8704;MLEAC=2;MLEAF=0.333;MQ=23.86;MQ0=0;MQRankSum=-0.202;QD=0.72;ReadPosRankSum=-0.260;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,1:15:12:0,12,125 0/1:18,1:19:1:1,0,202 0/1:19,3:22:63:63,0,149 ./. +chr12 39708938 . A G 301.84 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.596;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.5557;MLEAC=5;MLEAF=0.625;MQ=26.03;MQ0=0;MQRankSum=-1.776;QD=3.02;ReadPosRankSum=2.683;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,5:28:39:39,0,375 0/1:23,7:30:82:82,0,237 0/1:26,6:32:83:83,0,159 1/1:5,5:10:15:143,15,0 +chr12 39994570 . T C 308.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.864;DP=64;Dels=0.00;FS=3.093;HaplotypeScore=2.5516;MLEAC=3;MLEAF=0.500;MQ=25.51;MQ0=0;MQRankSum=-0.791;QD=5.05;ReadPosRankSum=4.614;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,6:20:95:115,0,95 0/1:14,6:20:51:51,0,225 0/1:13,8:21:99:181,0,123 ./. +chr12 39997867 rs12228617 G T 203 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.509;DB;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.3943;MLEAC=1;MLEAF=0.125;MQ=35.47;MQ0=0;MQRankSum=-2.856;QD=7.00;ReadPosRankSum=-0.844;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,9:29:99:239,0,515 0/0:36,0:36:99:0,99,1309 0/0:37,0:37:99:0,102,1310 0/0:7,0:7:21:0,21,258 +chr12 40158209 . A T 270.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.713;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=34.59;MQ0=0;MQRankSum=-2.847;QD=4.92;ReadPosRankSum=1.868;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,6:17:99:147,0,289 0/1:14,4:18:51:51,0,317 0/1:12,3:15:67:67,0,207 0/1:3,2:5:48:48,0,105 +chr12 40699638 . T G 140.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.113;DP=100;Dels=0.01;FS=51.742;HaplotypeScore=5.3941;MLEAC=4;MLEAF=0.500;MQ=32.80;MQ0=0;MQRankSum=-2.346;QD=1.41;ReadPosRankSum=0.094;SB=-6.918e-02 GT:AD:DP:GQ:PL 0/1:24,5:29:92:92,0,486 0/1:23,3:26:18:18,0,508 0/1:29,4:33:53:53,0,601 0/1:10,1:11:20:20,0,86 +chr12 40714856 . T A 119.89 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.890;DP=151;Dels=0.01;FS=21.448;HaplotypeScore=27.1838;MLEAC=4;MLEAF=0.500;MQ=27.79;MQ0=0;MQRankSum=-0.344;QD=0.79;ReadPosRankSum=0.387;SB=0.758 GT:AD:DP:GQ:PL 0/1:33,2:38:28:28,0,310 0/1:46,4:54:99:104,0,299 0/1:41,2:46:12:12,0,247 0/1:11,1:12:18:18,0,21 +chr12 40753303 rs3789330 A G 676.70 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.998;DB;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7311;MLEAC=5;MLEAF=0.625;MQ=29.06;MQ0=0;MQRankSum=0.534;QD=12.08;ReadPosRankSum=-0.978;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,7:21:99:188,0,292 1/1:2,13:15:19:432,19,0 0/1:12,5:17:69:69,0,375 0/1:2,1:3:22:33,0,22 +chr12 40758652 rs3761863 T C 866.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.943;DB;DP=71;Dels=0.01;FS=11.014;HaplotypeScore=0.4975;MLEAC=4;MLEAF=0.500;MQ=32.46;MQ0=0;MQRankSum=-2.248;QD=19.69;ReadPosRankSum=1.977;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/0:26,0:26:75:0,75,905 1/1:1,17:18:48:579,48,0 0/1:12,10:22:99:279,0,284 0/1:2,2:4:57:57,0,69 +chr12 40838146 rs10784620 A T 3495.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.344;DB;DP=262;Dels=0.02;FS=2.754;HaplotypeScore=3.3965;MLEAC=5;MLEAF=0.625;MQ=36.43;MQ0=0;MQRankSum=-5.657;QD=13.34;ReadPosRankSum=2.810;SB=-1.667e+03 GT:AD:DP:GQ:PL 0/1:50,18:68:99:465,0,1684 1/1:5,57:62:99:1932,159,0 0/1:47,25:72:99:687,0,1546 0/1:40,15:55:99:411,0,1269 +chr12 40901621 rs2920827 C T 71.40 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.186;DB;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=13.0979;MLEAC=2;MLEAF=0.333;MQ=20.42;MQ0=0;MQRankSum=0.321;QD=2.38;ReadPosRankSum=1.505;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:15:0,15,187 ./. 0/1:10,4:14:59:59,0,98 0/1:12,4:16:51:51,0,117 +chr12 40927088 . A G 479.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.139;DP=99;Dels=0.00;FS=24.425;HaplotypeScore=1.4402;MLEAC=4;MLEAF=0.500;MQ=34.73;MQ0=0;MQRankSum=-2.532;QD=4.84;ReadPosRankSum=1.163;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,4:27:69:69,0,393 0/1:18,7:25:99:149,0,339 0/1:16,7:23:99:194,0,293 0/1:19,5:24:99:110,0,322 +chr12 40929663 . A T 48.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.369;DP=82;Dels=0.01;FS=89.176;HaplotypeScore=15.0092;MLEAC=3;MLEAF=0.375;MQ=26.14;MQ0=0;MQRankSum=-3.533;QD=0.82;ReadPosRankSum=4.238;SB=-4.758e-01 GT:AD:DP:GQ:PL 0/0:19,3:22:18:0,18,452 0/1:15,4:19:31:31,0,222 0/1:16,4:20:38:38,0,123 0/1:15,5:20:23:23,0,268 +chr12 40951756 rs3829294 G A 563.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.045;DB;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.2500;MLEAC=3;MLEAF=0.375;MQ=39.87;MQ0=0;MQRankSum=-0.936;QD=9.56;ReadPosRankSum=-1.897;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/0:31,0:31:90:0,90,1228 0/1:19,5:24:99:131,0,678 0/1:16,9:25:99:306,0,544 0/1:5,5:10:99:170,0,140 +chr12 41582257 . C A 117.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.748;DP=53;Dels=0.00;FS=5.118;HaplotypeScore=0.8878;MLEAC=4;MLEAF=0.500;MQ=31.38;MQ0=0;MQRankSum=0.643;QD=2.22;ReadPosRankSum=-2.382;SB=-2.540e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:26:26,0,113 0/1:12,2:14:42:42,0,170 0/1:13,2:15:23:23,0,153 0/1:13,3:16:69:69,0,157 +chr12 41966626 . A C 255.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.343;DP=141;Dels=0.01;FS=93.942;HaplotypeScore=7.2683;MLEAC=4;MLEAF=0.500;MQ=34.80;MQ0=0;MQRankSum=-4.570;QD=1.81;ReadPosRankSum=3.488;SB=-2.507e+00 GT:AD:DP:GQ:PL 0/1:26,3:29:36:36,0,713 0/1:39,5:44:49:49,0,1114 0/1:36,9:45:99:149,0,908 0/1:16,5:21:64:64,0,504 +chr12 42825717 . G A 178.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.969;DP=83;Dels=0.01;FS=5.735;HaplotypeScore=3.1182;MLEAC=4;MLEAF=0.500;MQ=21.18;MQ0=0;MQRankSum=1.648;QD=2.15;ReadPosRankSum=-0.330;SB=0.327 GT:AD:DP:GQ:PL 0/1:18,2:21:42:42,0,117 0/1:18,5:23:43:99,0,43 0/1:24,3:27:55:55,0,136 0/1:9,2:11:25:25,0,25 +chr12 42854359 . A G 139.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.593;DP=183;Dels=0.01;FS=134.256;HaplotypeScore=12.7584;MLEAC=4;MLEAF=0.500;MQ=29.04;MQ0=0;MQRankSum=-5.066;QD=0.76;ReadPosRankSum=4.534;SB=-4.452e-01 GT:AD:DP:GQ:PL 0/1:35,11:46:74:74,0,830 0/1:45,9:54:47:47,0,963 0/1:40,10:50:51:51,0,1094 0/1:28,4:32:9:9,0,603 +chr12 43763044 . A T 33.48 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.769;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=5.9397;MLEAC=4;MLEAF=0.667;MQ=17.76;MQ0=0;MQRankSum=0.000;QD=1.15;ReadPosRankSum=0.597;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:6,1:7:3:38,3,0 0/1:8,1:10:18:20,0,18 0/1:10,2:12:14:14,0,40 ./. +chr12 45059188 . A T 125.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.162;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.7342;MLEAC=3;MLEAF=0.375;MQ=29.57;MQ0=0;MQRankSum=-2.970;QD=3.70;ReadPosRankSum=2.496;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,2:7:46:46,0,101 0/1:12,4:16:59:59,0,220 0/1:7,4:11:63:63,0,178 0/0:2,1:3:6:0,6,70 +chr12 45209723 rs34034808 A G 325.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.474;DB;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9930;MLEAC=3;MLEAF=0.375;MQ=34.53;MQ0=0;MQRankSum=-1.557;QD=5.72;ReadPosRankSum=0.576;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,7:20:99:196,0,375 0/0:35,0:35:99:0,99,1251 0/1:24,4:28:79:79,0,722 0/1:6,3:9:94:94,0,166 +chr12 45417412 rs35555451 C T 730.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.141;DB;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.4999;MLEAC=3;MLEAF=0.375;MQ=33.35;MQ0=0;MQRankSum=-0.911;QD=7.38;ReadPosRankSum=-1.630;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,11:39:99:317,0,790 0/0:43,0:43:99:0,108,1256 0/1:29,15:44:99:313,0,712 0/1:10,6:16:99:144,0,181 +chr12 45761441 . T A 189.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.498;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6714;MLEAC=4;MLEAF=0.500;MQ=27.69;MQ0=0;MQRankSum=-1.267;QD=2.18;ReadPosRankSum=1.547;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,5:22:99:108,0,249 0/1:26,5:31:63:63,0,363 0/1:22,3:25:41:41,0,337 0/1:8,1:9:20:20,0,57 +chr12 46245234 . G T 37.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.490;DP=234;Dels=0.00;FS=75.067;HaplotypeScore=4.1545;MLEAC=2;MLEAF=0.250;MQ=36.30;MQ0=0;MQRankSum=-3.476;QD=0.34;ReadPosRankSum=1.253;SB=-1.013e+00 GT:AD:DP:GQ:PL 0/1:48,5:53:39:39,0,1243 0/1:51,5:56:40:40,0,1207 0/0:62,3:65:56:0,56,1631 0/0:56,4:60:20:0,20,1415 +chr12 46345463 . A G 78.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.383;DP=155;Dels=0.00;FS=66.447;HaplotypeScore=2.4488;MLEAC=2;MLEAF=0.250;MQ=36.94;MQ0=0;MQRankSum=-2.971;QD=1.09;ReadPosRankSum=-2.123;SB=-9.672e-01 GT:AD:DP:GQ:PL 0/0:35,2:37:28:0,28,1048 0/1:46,6:52:64:64,0,1072 0/0:44,2:46:52:0,52,1197 0/1:17,3:20:56:56,0,363 +chr12 46986799 . A C 39.44 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.714;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=32.90;MQ0=0;MQRankSum=1.525;QD=1.16;ReadPosRankSum=0.052;SB=-1.814e+00 GT:AD:DP:GQ:PL 0/1:15,1:16:1:1,0,339 0/0:25,1:26:21:0,21,658 0/1:15,3:18:74:74,0,323 0/0:8,0:8:12:0,12,146 +chr12 47628814 . A C 441.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.553;DP=66;Dels=0.00;FS=26.051;HaplotypeScore=6.0496;MLEAC=4;MLEAF=0.500;MQ=32.03;MQ0=0;MQRankSum=0.281;QD=6.69;ReadPosRankSum=0.966;SB=0.074 GT:AD:DP:GQ:PL 0/1:7,5:12:99:135,0,125 0/1:11,7:18:99:169,0,153 0/1:21,5:26:99:130,0,226 0/1:7,2:10:50:50,0,53 +chr12 48104842 . T G 38.25 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.358;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.1928;MLEAC=3;MLEAF=0.500;MQ=34.50;MQ0=0;MQRankSum=0.358;QD=12.75;ReadPosRankSum=1.231;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:41,3,0 ./. 0/1:1,1:2:35:35,0,37 0/0:2,0:2:3:0,3,39 +chr12 48132451 rs2072116 T C 3065.81 . AC=6;AF=0.750;AN=8;BaseQRankSum=4.066;DB;DP=109;Dels=0.00;FS=25.455;HaplotypeScore=0.7381;MLEAC=6;MLEAF=0.750;MQ=36.57;MQ0=0;MQRankSum=-2.095;QD=28.13;ReadPosRankSum=2.354;SB=-1.141e+02 GT:AD:DP:GQ:PL 1/1:1,21:22:63:825,63,0 0/1:16,14:30:99:458,0,491 0/1:4,25:29:24:890,0,24 1/1:2,26:28:56:939,56,0 +chr12 48132587 . G T 48.46 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.821;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.4463;MLEAC=1;MLEAF=0.125;MQ=38.11;MQ0=0;MQRankSum=-1.685;QD=1.51;ReadPosRankSum=-2.302;SB=-8.575e-01 GT:AD:DP:GQ:PL 0/0:31,1:32:56:0,56,1001 0/0:31,3:34:4:0,4,963 0/0:38,0:38:90:0,90,1155 0/1:27,5:32:84:84,0,739 +chr12 48142300 . C G 42.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.095;DP=117;Dels=0.00;FS=7.028;HaplotypeScore=2.2241;MLEAC=2;MLEAF=0.250;MQ=35.11;MQ0=0;MQRankSum=0.193;QD=0.84;ReadPosRankSum=1.100;SB=-2.550e+00 GT:AD:DP:GQ:PL 0/1:26,4:30:52:52,0,766 0/1:18,2:20:30:30,0,403 0/0:31,2:33:2:0,2,685 0/0:33,1:34:36:0,36,729 +chr12 48177906 rs7306788 C T 378.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.964;DB;DP=51;Dels=0.00;FS=16.906;HaplotypeScore=0.8250;MLEAC=4;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=2.229;QD=7.42;ReadPosRankSum=-2.105;SB=-1.020e+02 GT:AD:DP:GQ:PL 0/1:10,4:14:72:72,0,145 0/1:10,3:13:47:47,0,203 0/1:6,5:11:99:115,0,105 0/1:7,6:13:79:187,0,79 +chr12 48179089 . C T 129.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.372;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4868;MLEAC=3;MLEAF=0.375;MQ=28.20;MQ0=0;MQRankSum=2.433;QD=1.64;ReadPosRankSum=-3.069;SB=-1.205e-02 GT:AD:DP:GQ:PL 0/1:23,4:27:59:59,0,377 0/1:23,4:27:71:71,0,285 0/0:31,2:33:5:0,5,563 0/1:23,2:25:41:41,0,238 +chr12 48196350 . T A 125.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.334;DP=81;Dels=0.02;FS=10.742;HaplotypeScore=5.7153;MLEAC=4;MLEAF=0.500;MQ=19.45;MQ0=0;MQRankSum=-0.380;QD=1.55;ReadPosRankSum=3.048;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,3:22:16:16,0,113 0/1:17,5:24:98:103,0,98 0/1:14,3:18:30:30,0,90 0/1:9,4:15:19:19,0,96 +chr12 48360950 . A G 88.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.507;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.6152;MLEAC=3;MLEAF=0.375;MQ=26.20;MQ0=0;MQRankSum=0.188;QD=1.48;ReadPosRankSum=-0.043;SB=12.93 GT:AD:DP:GQ:PL 0/1:15,2:17:19:19,0,43 0/0:22,0:23:9:0,9,80 0/1:18,2:20:24:24,0,244 0/1:19,4:23:88:88,0,136 +chr12 48888689 rs9268 C G 3899.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.093;DB;DP=186;Dels=0.00;FS=7.053;HaplotypeScore=1.7250;MLEAC=5;MLEAF=0.625;MQ=34.77;MQ0=0;MQRankSum=-0.882;QD=20.96;ReadPosRankSum=1.980;SB=-1.121e+03 GT:AD:DP:GQ:PL 0/1:25,14:39:99:433,0,778 1/1:1,55:56:99:2058,146,0 0/1:25,26:51:99:857,0,619 0/1:19,21:40:99:551,0,525 +chr12 49171452 . T G 204.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-8.499;DP=476;Dels=0.00;FS=87.902;HaplotypeScore=19.5221;MLEAC=1;MLEAF=0.125;MQ=32.29;MQ0=0;MQRankSum=-8.162;QD=1.68;ReadPosRankSum=2.779;SB=-5.887e+00 GT:AD:DP:GQ:PL 0/1:102,20:122:99:241,0,2204 0/0:100,11:111:48:0,48,2419 0/0:124,10:134:60:0,60,3126 0/0:99,10:109:99:0,100,2774 +chr12 49176872 rs3730308 G T 1272.94 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.152;DB;DP=56;Dels=0.02;FS=7.192;HaplotypeScore=1.8687;MLEAC=6;MLEAF=0.750;MQ=31.12;MQ0=0;MQRankSum=0.455;QD=22.73;ReadPosRankSum=2.550;SB=-2.018e+02 GT:AD:DP:GQ:PL 0/1:5,8:13:63:250,0,63 0/1:4,7:11:18:160,0,18 1/1:2,18:20:24:638,24,0 1/1:3,8:11:21:271,21,0 +chr12 49219138 rs11168751 C G 731.88 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.884;DB;DP=72;Dels=0.00;FS=1.413;HaplotypeScore=5.5743;MLEAC=5;MLEAF=0.625;MQ=27.81;MQ0=0;MQRankSum=-0.522;QD=10.17;ReadPosRankSum=-1.608;SB=-2.438e+02 GT:AD:DP:GQ:PL 0/1:11,6:17:99:157,0,204 0/1:13,3:18:61:61,0,232 1/1:5,14:20:33:379,33,0 1/1:8,7:17:18:181,18,0 +chr12 49319140 . C A 59.94 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.460;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.9576;MLEAC=3;MLEAF=0.375;MQ=24.36;MQ0=0;MQRankSum=-0.770;QD=2.22;ReadPosRankSum=1.035;SB=0.087 GT:AD:DP:GQ:PL 0/0:10,0:10:18:0,18,179 0/1:10,3:13:37:37,0,76 0/1:7,3:10:35:35,0,145 1/1:2,2:4:3:32,3,0 +chr12 49390607 . T G 43.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.786;DP=130;Dels=0.00;FS=2.261;HaplotypeScore=2.6442;MLEAC=2;MLEAF=0.250;MQ=31.94;MQ0=0;MQRankSum=0.187;QD=0.60;ReadPosRankSum=-0.066;SB=-1.428e-02 GT:AD:DP:GQ:PL 0/0:33,1:34:55:0,55,944 0/0:23,0:23:42:0,42,500 0/1:35,5:40:35:35,0,789 0/1:29,4:33:50:50,0,645 +chr12 49425846 . TA T 185.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.111;DP=128;FS=36.744;HaplotypeScore=54.4481;MLEAC=3;MLEAF=0.375;MQ=27.03;MQ0=0;MQRankSum=-1.600;QD=1.98;RPA=2,1;RU=A;ReadPosRankSum=-0.152;SB=0.264;STR GT:AD:DP:GQ:PL 0/1:30,4:25:44:44,0,710 0/1:27,4:24:21:21,0,606 0/0:31,3:26:48:0,48,825 0/1:19,7:16:99:173,0,300 +chr12 49426007 . C A 75.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.844;DP=121;Dels=0.01;FS=15.635;HaplotypeScore=7.3149;MLEAC=2;MLEAF=0.250;MQ=30.33;MQ0=0;MQRankSum=-2.253;QD=1.20;ReadPosRankSum=2.394;SB=3.929e-03 GT:AD:DP:GQ:PL 0/0:28,0:28:78:0,78,978 0/0:27,1:30:37:0,37,648 0/1:27,5:33:78:78,0,378 0/1:24,4:29:39:39,0,385 +chr12 49433592 . C G 251.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.215;DP=144;Dels=0.01;FS=112.523;HaplotypeScore=7.4789;MLEAC=4;MLEAF=0.500;MQ=30.84;MQ0=0;MQRankSum=-4.479;QD=1.75;ReadPosRankSum=1.672;SB=-1.197e-02 GT:AD:DP:GQ:PL 0/1:28,6:34:56:56,0,721 0/1:28,6:34:95:95,0,636 0/1:29,8:37:99:99,0,730 0/1:30,7:38:44:44,0,572 +chr12 49440007 . A G 36.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.952;DP=142;Dels=0.05;FS=45.129;HaplotypeScore=5.4321;MLEAC=1;MLEAF=0.125;MQ=34.85;MQ0=0;MQRankSum=-1.094;QD=0.49;ReadPosRankSum=-1.457;SB=-6.671e+00 GT:AD:DP:GQ:PL 0/1:31,2:33:2:2,0,774 0/1:33,4:37:71:71,0,730 0/0:34,0:34:75:0,75,946 0/0:29,2:31:33:0,33,850 +chr12 49667103 rs9668136 A G,T 1161.74 . AC=2,6;AF=0.250,0.750;AN=8;BaseQRankSum=1.824;DB;DP=57;Dels=0.00;FS=8.456;HaplotypeScore=0.7278;MLEAC=2,6;MLEAF=0.250,0.750;MQ=29.03;MQ0=0;MQRankSum=2.803;QD=20.38;ReadPosRankSum=-1.869;SB=-2.432e+01 GT:AD:DP:GQ:PL 1/2:5,2,8:15:35:264,208,202,56,0,35 2/2:4,1,13:18:39:469,469,469,39,39,0 1/2:4,2,13:19:12:410,361,355,48,0,12 2/2:1,0,4:5:9:96,96,96,9,9,0 +chr12 49690056 . C G 35.40 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.382;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=28.61;MQ0=0;MQRankSum=0.382;QD=3.93;ReadPosRankSum=0.978;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:32,3,0 0/1:3,1:4:14:14,0,59 1/1:3,1:4:3:31,3,0 0/0:2,0:2:3:0,3,39 +chr12 49717658 . C A 49.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.717;DP=220;Dels=0.00;FS=22.566;HaplotypeScore=3.6693;MLEAC=1;MLEAF=0.125;MQ=37.17;MQ0=0;MQRankSum=-1.931;QD=0.96;ReadPosRankSum=-2.514;SB=0.876 GT:AD:DP:GQ:PL 0/0:55,1:56:99:0,107,1718 0/0:47,2:49:52:0,52,1319 0/0:62,1:63:99:0,110,1652 0/1:44,6:51:86:86,0,1053 +chr12 49951822 . C G 127.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.253;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.2936;MLEAC=3;MLEAF=0.375;MQ=26.44;MQ0=0;MQRankSum=-0.789;QD=2.84;ReadPosRankSum=-0.508;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,6:18:78:78,0,264 0/1:13,1:14:9:9,0,177 0/0:15,1:16:6:0,6,273 0/1:8,5:13:82:82,0,171 +chr12 49997217 . T C 135.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.161;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=3.9856;MLEAC=4;MLEAF=0.500;MQ=29.60;MQ0=0;MQRankSum=1.522;QD=2.66;ReadPosRankSum=1.128;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:83:83,0,198 0/1:12,1:13:17:17,0,102 0/1:9,2:11:48:48,0,84 0/1:8,1:9:30:30,0,50 +chr12 50025684 . G A 81.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.446;DP=197;Dels=0.00;FS=43.713;HaplotypeScore=20.3131;MLEAC=3;MLEAF=0.375;MQ=30.18;MQ0=0;MQRankSum=-5.119;QD=0.56;ReadPosRankSum=-0.835;SB=0.685 GT:AD:DP:GQ:PL 0/0:45,5:50:38:0,38,942 0/1:47,6:53:23:23,0,1040 0/1:41,8:49:78:78,0,1126 0/1:39,6:45:24:24,0,874 +chr12 50040811 rs3841320 A AG 100.95 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.407;DB;DP=95;FS=0.000;HaplotypeScore=27.4541;MLEAC=1;MLEAF=0.125;MQ=29.82;MQ0=0;MQRankSum=-0.723;QD=4.59;RPA=4,5;RU=G;ReadPosRankSum=-0.486;SB=-1.473e-03;STR GT:AD:DP:GQ:PL 0/0:26,0:26:57:0,57,723 0/1:16,6:16:99:146,0,272 0/0:23,0:22:48:0,48,615 0/0:20,0:15:36:0,36,460 +chr12 50047365 . G T 35.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.875;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=20.5553;MLEAC=2;MLEAF=0.250;MQ=25.19;MQ0=0;MQRankSum=-1.981;QD=0.69;ReadPosRankSum=2.457;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,5:28:41:41,0,258 0/0:19,1:20:12:0,12,139 0/1:22,2:24:36:36,0,108 0/0:24,1:26:30:0,30,353 +chr12 50055763 . G T 271.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.301;DP=258;Dels=0.00;FS=137.033;HaplotypeScore=9.0326;MLEAC=3;MLEAF=0.375;MQ=34.82;MQ0=0;MQRankSum=-5.909;QD=1.39;ReadPosRankSum=-0.050;SB=0.780 GT:AD:DP:GQ:PL 0/1:55,11:66:99:123,0,1602 0/1:64,9:74:85:85,0,1923 0/0:57,6:63:50:0,50,1823 0/1:44,9:54:99:107,0,1289 +chr12 50196770 . G T 812.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.343;DP=132;Dels=0.02;FS=26.369;HaplotypeScore=4.6267;MLEAC=4;MLEAF=0.500;MQ=28.92;MQ0=0;MQRankSum=0.095;QD=6.16;ReadPosRankSum=2.442;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:14,9:23:99:258,0,315 0/1:34,11:45:99:244,0,302 0/1:20,9:29:99:173,0,365 0/1:25,8:33:99:180,0,240 +chr12 50236889 . T C 62.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.508;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2484;MLEAC=3;MLEAF=0.375;MQ=27.57;MQ0=0;MQRankSum=-0.692;QD=1.34;ReadPosRankSum=-1.579;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:51:51,0,253 0/1:14,2:16:22:22,0,200 0/0:26,1:27:30:0,30,636 0/1:10,2:12:33:33,0,225 +chr12 50282891 . T G 60.64 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.369;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.0080;MLEAC=3;MLEAF=0.375;MQ=28.16;MQ0=0;MQRankSum=-2.757;QD=2.43;ReadPosRankSum=1.296;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:83:83,0,177 0/1:5,2:7:13:13,0,89 0/0:10,2:12:21:0,21,230 0/1:5,2:7:6:6,0,168 +chr12 50344787 . T G 103.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.048;DP=107;Dels=0.03;FS=4.877;HaplotypeScore=9.5492;MLEAC=2;MLEAF=0.250;MQ=33.71;MQ0=0;MQRankSum=-1.695;QD=2.11;ReadPosRankSum=1.432;SB=0.188 GT:AD:DP:GQ:PL 0/1:23,3:26:66:66,0,355 0/0:22,0:22:33:0,33,403 0/0:33,1:34:20:0,20,577 0/1:19,3:22:79:79,0,208 +chr12 50367996 . A C 223.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.112;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=8.8007;MLEAC=3;MLEAF=0.375;MQ=25.15;MQ0=0;MQRankSum=-2.555;QD=3.86;ReadPosRankSum=2.518;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,8:16:80:158,0,80 0/1:14,6:20:71:71,0,151 0/0:15,1:16:3:0,3,243 0/1:15,6:21:36:36,0,110 +chr12 50498432 . G T 231.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.901;DP=206;Dels=0.00;FS=72.401;HaplotypeScore=6.7393;MLEAC=2;MLEAF=0.250;MQ=34.72;MQ0=0;MQRankSum=-5.667;QD=2.23;ReadPosRankSum=2.937;SB=-1.234e+00 GT:AD:DP:GQ:PL 0/1:37,12:49:99:139,0,1093 0/1:45,9:55:99:134,0,1266 0/0:49,5:54:16:0,16,1444 0/0:45,3:48:60:0,60,1166 +chr12 50625411 . A C 253.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.398;DP=144;Dels=0.00;FS=41.308;HaplotypeScore=2.1699;MLEAC=4;MLEAF=0.500;MQ=34.21;MQ0=0;MQRankSum=-2.677;QD=2.41;ReadPosRankSum=-0.380;SB=-2.657e+00 GT:AD:DP:GQ:PL 0/1:35,8:43:99:167,0,883 0/1:35,7:42:99:102,0,970 0/0:36,3:39:0:0,0,893 0/1:17,3:20:24:24,0,349 +chr12 50749294 rs4421818 A G 45.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=29.30;MQ0=0;MQRankSum=0.736;QD=15.00;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:37,3,0 1/1:1,1:2:3:41,3,0 ./. ./. +chr12 51502791 rs7134695 C T 1743.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.492;DB;DP=71;Dels=0.03;FS=40.468;HaplotypeScore=0.5503;MLEAC=8;MLEAF=1.00;MQ=24.41;MQ0=0;MQRankSum=4.011;QD=24.56;ReadPosRankSum=0.227;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:1,18:19:54:562,54,0 1/1:3,17:20:48:500,48,0 1/1:1,18:19:48:467,48,0 1/1:2,9:11:24:254,24,0 +chr12 51752813 . A C 35.89 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.395;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3145;MLEAC=2;MLEAF=0.250;MQ=28.26;MQ0=0;MQRankSum=-2.733;QD=0.97;ReadPosRankSum=2.008;SB=17.92 GT:AD:DP:GQ:PL 0/0:21,2:26:3:0,3,333 0/0:13,1:15:18:0,18,195 0/1:24,3:27:3:3,0,471 0/1:6,3:10:49:69,0,49 +chr12 52294702 . A G 50 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.846;DP=121;Dels=0.00;FS=4.960;HaplotypeScore=2.3264;MLEAC=1;MLEAF=0.125;MQ=21.42;MQ0=0;MQRankSum=1.324;QD=1.61;ReadPosRankSum=1.493;SB=0.038 GT:AD:DP:GQ:PL 0/0:33,0:33:36:0,36,382 0/0:29,1:30:21:0,21,225 0/1:27,4:31:86:86,0,174 0/0:27,0:27:33:0,33,394 +chr12 52404618 rs1298913 T G 3296.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.082;DB;DP=104;Dels=0.00;FS=13.740;HaplotypeScore=1.1613;MLEAC=8;MLEAF=1.00;MQ=34.19;MQ0=0;MQRankSum=-0.274;QD=31.69;ReadPosRankSum=3.949;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:3,23:26:22:785,22,0 1/1:2,23:25:69:890,69,0 1/1:3,26:29:75:943,75,0 1/1:4,20:24:57:678,57,0 +chr12 52432467 . C G 257.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.841;DP=92;Dels=0.00;FS=126.282;HaplotypeScore=9.4816;MLEAC=4;MLEAF=0.500;MQ=30.88;MQ0=0;MQRankSum=0.660;QD=2.80;ReadPosRankSum=0.952;SB=-7.577e-01 GT:AD:DP:GQ:PL 0/1:21,2:23:38:38,0,462 0/1:22,2:25:29:29,0,492 0/1:20,4:24:95:95,0,479 0/1:15,5:20:99:138,0,345 +chr12 52449051 . T G 496.65 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.909;DP=36;Dels=0.00;FS=16.385;HaplotypeScore=2.1484;MLEAC=6;MLEAF=0.750;MQ=26.81;MQ0=0;MQRankSum=-0.872;QD=13.80;ReadPosRankSum=2.381;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,8:11:24:250,24,0 0/1:5,2:7:14:38,0,14 0/1:5,7:12:89:150,0,89 1/1:3,3:6:9:104,9,0 +chr12 52501403 . T A 1197.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.910;DP=261;Dels=0.00;FS=164.778;HaplotypeScore=5.9720;MLEAC=4;MLEAF=0.500;MQ=19.23;MQ0=0;MQRankSum=6.953;QD=4.59;ReadPosRankSum=5.315;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:46,16:62:99:318,0,275 0/1:51,16:67:99:388,0,229 0/1:59,16:75:99:333,0,361 0/1:47,10:57:99:201,0,309 +chr12 52709032 rs3741721 T C 3067.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.753;DB;DP=221;Dels=0.00;FS=5.018;HaplotypeScore=1.1335;MLEAC=4;MLEAF=0.500;MQ=37.26;MQ0=0;MQRankSum=-3.061;QD=21.01;ReadPosRankSum=1.290;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/0:75,0:75:99:0,199,2688 1/1:6,45:51:76:1744,76,0 0/1:35,27:62:99:880,0,1063 0/1:18,15:33:99:492,0,483 +chr12 52756584 . G C 30.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.522;DP=64;Dels=0.05;FS=8.175;HaplotypeScore=10.9735;MLEAC=3;MLEAF=0.375;MQ=27.63;MQ0=0;MQRankSum=-2.578;QD=0.60;ReadPosRankSum=1.563;SB=1.03 GT:AD:DP:GQ:PL 0/0:11,2:13:3:0,3,44 0/1:13,2:15:20:20,0,166 0/1:14,1:16:2:2,0,175 0/1:14,3:17:47:47,0,195 +chr12 52776895 rs1732298 G A 2663.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.500;DB;DP=117;Dels=0.00;FS=25.467;HaplotypeScore=1.9944;MLEAC=6;MLEAF=0.750;MQ=34.86;MQ0=0;MQRankSum=-2.631;QD=22.77;ReadPosRankSum=1.428;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,14:29:99:435,0,450 0/1:16,17:33:99:570,0,530 1/1:4,24:28:45:874,45,0 1/1:4,23:27:69:831,69,0 +chr12 52779391 rs1732305 A G 3512.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.677;DB;DP=136;Dels=0.00;FS=5.283;HaplotypeScore=1.5139;MLEAC=6;MLEAF=0.750;MQ=37.90;MQ0=0;MQRankSum=-1.159;QD=25.82;ReadPosRankSum=1.530;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,14:30:99:462,0,473 0/1:20,13:33:99:420,0,699 1/1:2,33:35:66:1298,66,0 1/1:3,35:38:73:1332,73,0 +chr12 52789509 rs1732264 T C 415.62 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.843;DB;DP=35;Dels=0.03;FS=1.623;HaplotypeScore=2.7677;MLEAC=7;MLEAF=0.875;MQ=29.67;MQ0=0;MQRankSum=1.169;QD=11.87;ReadPosRankSum=1.713;SB=-1.632e+02 GT:AD:DP:GQ:PL 0/1:7,3:11:95:95,0,216 1/1:3,4:7:12:159,12,0 1/1:7,4:12:12:152,12,0 1/1:2,2:4:6:53,6,0 +chr12 52794273 . A C 257.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.209;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=10.4322;MLEAC=4;MLEAF=0.500;MQ=23.67;MQ0=0;MQRankSum=-0.538;QD=5.05;ReadPosRankSum=3.195;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:48:89,0,48 0/1:10,1:11:23:23,0,54 0/1:7,4:11:87:87,0,152 0/1:12,6:18:99:101,0,163 +chr12 52818377 rs61730614 C T 3656.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=-3.175;DB;DP=171;Dels=0.00;FS=7.026;HaplotypeScore=5.6692;MLEAC=6;MLEAF=0.750;MQ=35.17;MQ0=0;MQRankSum=-3.264;QD=21.38;ReadPosRankSum=0.633;SB=-1.192e+03 GT:AD:DP:GQ:PL 0/1:26,14:40:99:362,0,801 0/1:23,17:40:99:500,0,694 1/1:6,46:52:99:1770,138,0 1/1:8,31:39:84:1024,84,0 +chr12 52841046 . A T 81.07 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.861;DP=66;Dels=0.02;FS=26.940;HaplotypeScore=4.1243;MLEAC=5;MLEAF=0.625;MQ=14.67;MQ0=0;MQRankSum=3.337;QD=1.72;ReadPosRankSum=-1.027;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:9,2:11:6:55,6,0 0/1:15,4:19:21:40,0,21 0/0:19,0:19:3:0,3,24 1/1:15,1:16:3:29,3,0 +chr12 52886876 . A C 62.31 . AC=5;AF=0.833;AN=6;BaseQRankSum=-3.631;DP=80;Dels=0.00;FS=66.935;HaplotypeScore=1.6397;MLEAC=5;MLEAF=0.833;MQ=9.51;MQ0=0;MQRankSum=2.821;QD=0.92;ReadPosRankSum=2.631;SB=-8.613e-03 GT:AD:DP:GQ:PL 1/1:18,1:19:3:26,3,0 ./. 1/1:19,2:21:6:57,6,0 0/1:25,3:28:18:18,0,54 +chr12 52946543 rs665522 C T 1256.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.419;DB;DP=158;Dels=0.00;FS=4.440;HaplotypeScore=2.8156;MLEAC=5;MLEAF=0.625;MQ=28.50;MQ0=0;MQRankSum=-0.021;QD=7.95;ReadPosRankSum=-0.053;SB=-2.960e+02 GT:AD:DP:GQ:PL 0/1:22,9:31:99:130,0,442 1/1:11,30:42:66:749,66,0 0/1:39,14:53:99:285,0,749 0/1:22,10:32:99:138,0,424 +chr12 53086573 . C A 37.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.169;DP=95;Dels=0.00;FS=20.504;HaplotypeScore=2.2267;MLEAC=2;MLEAF=0.250;MQ=35.35;MQ0=0;MQRankSum=-0.766;QD=0.77;ReadPosRankSum=-2.806;SB=-1.278e+00 GT:AD:DP:GQ:PL 0/1:19,3:23:25:25,0,560 0/0:10,0:10:21:0,21,261 0/0:34,2:36:17:0,17,794 0/1:22,4:26:54:54,0,569 +chr12 53207990 . G A 33.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.076;DP=62;Dels=0.02;FS=5.516;HaplotypeScore=9.6298;MLEAC=2;MLEAF=0.250;MQ=20.29;MQ0=0;MQRankSum=-0.636;QD=1.12;ReadPosRankSum=2.314;SB=0.035 GT:AD:DP:GQ:PL 0/1:11,3:14:36:36,0,80 0/1:13,3:16:37:37,0,40 0/0:20,2:23:6:0,6,45 0/0:8,0:8:3:0,3,28 +chr12 53241898 . A C 94.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.939;DP=63;Dels=0.02;FS=4.961;HaplotypeScore=3.9874;MLEAC=3;MLEAF=0.375;MQ=19.60;MQ0=0;MQRankSum=2.619;QD=1.88;ReadPosRankSum=1.484;SB=2.35 GT:AD:DP:GQ:PL 0/1:10,2:12:45:48,0,45 0/1:17,3:20:12:12,0,75 0/1:14,3:17:73:75,0,73 0/0:12,1:13:3:0,3,30 +chr12 53291585 rs78500185 A G 100.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.860;DB;DP=36;Dels=0.00;FS=2.569;HaplotypeScore=1.9490;MLEAC=3;MLEAF=0.375;MQ=25.44;MQ0=0;MQRankSum=-0.120;QD=4.04;ReadPosRankSum=0.060;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:21:0,21,267 0/1:5,3:9:24:95,0,24 0/1:7,1:9:25:25,0,74 0/1:6,1:7:24:24,0,108 +chr12 53445959 rs10783560 T C 31.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=7;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.69;MQ0=0;MQRankSum=0.736;QD=10.59;ReadPosRankSum=-0.736;SB=-2.776e+01 GT:AD:DP:GQ:PL ./. ./. 1/1:1,2:3:6:63,6,0 ./. +chr12 53462177 . C A 142.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.671;DP=61;Dels=0.00;FS=5.411;HaplotypeScore=2.6772;MLEAC=4;MLEAF=0.500;MQ=23.00;MQ0=0;MQRankSum=2.221;QD=3.40;ReadPosRankSum=1.551;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:50:71,0,50 0/0:19,0:19:6:0,6,45 0/1:12,2:14:27:27,0,69 1/1:8,4:13:9:90,9,0 +chr12 53547299 . A C 31.99 . AC=2;AF=0.500;AN=4;BaseQRankSum=-0.265;DP=48;Dels=0.04;FS=12.781;HaplotypeScore=13.2244;MLEAC=2;MLEAF=0.500;MQ=13.52;MQ0=0;MQRankSum=0.478;QD=1.23;ReadPosRankSum=0.478;SB=-5.354e-01 GT:AD:DP:GQ:PL 0/1:5,3:8:46:57,0,46 0/1:15,1:16:9:9,0,114 ./. ./. +chr12 53586503 . C A 759.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.970;DP=106;Dels=0.01;FS=54.142;HaplotypeScore=9.3018;MLEAC=4;MLEAF=0.500;MQ=32.07;MQ0=0;MQRankSum=-1.810;QD=7.17;ReadPosRankSum=0.640;SB=-2.612e+01 GT:AD:DP:GQ:PL 0/1:14,6:22:99:174,0,152 0/1:23,7:32:99:166,0,362 0/1:20,6:27:99:126,0,238 0/1:12,12:24:72:336,0,72 +chr12 53590347 rs11574538 C T 50 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.858;DB;DP=56;Dels=0.00;FS=2.130;HaplotypeScore=1.3323;MLEAC=1;MLEAF=0.125;MQ=30.39;MQ0=0;MQRankSum=-1.104;QD=5.56;ReadPosRankSum=0.123;SB=-2.894e+01 GT:AD:DP:GQ:PL 0/0:19,0:19:42:0,42,479 0/1:5,4:9:16:86,0,16 0/0:12,0:12:33:0,33,401 0/0:16,0:16:36:0,36,435 +chr12 53621172 . T C 43.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.272;DP=74;Dels=0.00;FS=4.986;HaplotypeScore=4.2981;MLEAC=2;MLEAF=0.250;MQ=27.17;MQ0=0;MQRankSum=-0.014;QD=1.46;ReadPosRankSum=-1.561;SB=-2.434e-01 GT:AD:DP:GQ:PL 0/1:14,2:16:36:36,0,169 0/0:23,1:24:21:0,21,207 0/0:19,1:20:10:0,10,308 0/1:12,2:14:49:49,0,103 +chr12 53662624 rs6580942 C A 855.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.290;DB;DP=61;Dels=0.00;FS=7.953;HaplotypeScore=0.4932;MLEAC=4;MLEAF=0.500;MQ=32.10;MQ0=0;MQRankSum=-2.315;QD=14.03;ReadPosRankSum=0.905;SB=-5.907e+01 GT:AD:DP:GQ:PL 0/1:4,5:9:99:155,0,138 0/1:5,9:14:15:291,0,15 0/1:12,6:18:99:159,0,288 0/1:9,11:20:99:293,0,279 +chr12 53663969 . T C 40.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.593;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.4333;MLEAC=2;MLEAF=0.250;MQ=31.08;MQ0=0;MQRankSum=-0.411;QD=2.40;ReadPosRankSum=-0.046;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:19:19,0,91 0/0:5,0:5:6:0,6,67 0/0:8,0:8:9:0,9,122 0/1:6,2:8:62:62,0,66 +chr12 53664634 . T G 224.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.658;DP=44;Dels=0.02;FS=3.150;HaplotypeScore=9.1359;MLEAC=3;MLEAF=0.375;MQ=25.36;MQ0=0;MQRankSum=0.461;QD=6.82;ReadPosRankSum=1.336;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:6:0,6,57 0/1:8,4:12:57:77,0,57 0/1:8,5:13:99:106,0,127 0/1:3,4:7:37:84,0,37 +chr12 53670545 rs1318648 C A 2034.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.452;DB;DP=120;Dels=0.01;FS=5.810;HaplotypeScore=1.2384;MLEAC=5;MLEAF=0.625;MQ=34.39;MQ0=0;MQRankSum=-2.428;QD=16.95;ReadPosRankSum=0.387;SB=-3.900e+02 GT:AD:DP:GQ:PL 0/1:13,12:25:99:335,0,395 1/1:1,27:28:58:950,58,0 0/1:17,12:29:99:365,0,452 0/1:22,15:37:99:430,0,529 +chr12 53677089 rs4454760 G A 2712.58 . AC=7;AF=0.875;AN=8;BaseQRankSum=4.356;DB;DP=114;Dels=0.01;FS=29.692;HaplotypeScore=3.6273;MLEAC=7;MLEAF=0.875;MQ=30.00;MQ0=0;MQRankSum=2.660;QD=23.79;ReadPosRankSum=2.596;SB=-6.795e+02 GT:AD:DP:GQ:PL 1/1:4,17:21:51:661,51,0 1/1:6,25:31:46:801,46,0 1/1:10,27:37:40:778,40,0 0/1:8,16:24:26:517,0,26 +chr12 53722128 rs7139272 G A 3459.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.259;DB;DP=131;Dels=0.00;FS=3.478;HaplotypeScore=2.5773;MLEAC=8;MLEAF=1.00;MQ=29.02;MQ0=0;MQRankSum=0.662;QD=26.40;ReadPosRankSum=3.486;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:2,31:33:55:953,55,0 1/1:5,28:33:19:745,19,0 1/1:1,37:38:99:1117,102,0 1/1:4,23:27:5:644,5,0 +chr12 53722404 . A G 313.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.158;DP=61;Dels=0.00;FS=67.432;HaplotypeScore=4.2091;MLEAC=4;MLEAF=0.500;MQ=25.90;MQ0=0;MQRankSum=0.127;QD=5.14;ReadPosRankSum=2.450;SB=-8.183e-01 GT:AD:DP:GQ:PL 0/1:10,4:14:90:90,0,148 0/1:10,4:14:59:78,0,59 0/1:17,6:23:99:125,0,165 0/1:7,3:10:42:63,0,42 +chr12 53937242 . T C 358.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.920;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.2847;MLEAC=1;MLEAF=0.125;MQ=35.47;MQ0=0;MQRankSum=-2.768;QD=9.97;ReadPosRankSum=1.529;SB=-2.700e+01 GT:AD:DP:GQ:PL 0/0:31,0:31:84:0,84,1091 0/1:21,15:36:99:395,0,583 0/0:42,0:42:99:0,114,1471 0/0:10,0:10:27:0,27,286 +chr12 54063676 . T A 70.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.506;DP=109;Dels=0.01;FS=37.083;HaplotypeScore=19.5257;MLEAC=3;MLEAF=0.375;MQ=23.49;MQ0=0;MQRankSum=0.680;QD=0.91;ReadPosRankSum=-0.136;SB=1.33 GT:AD:DP:GQ:PL 0/0:27,3:31:6:0,6,309 0/1:23,2:25:30:30,0,190 0/1:27,2:29:2:2,0,198 0/1:18,5:23:78:78,0,182 +chr12 54105843 . T G 31.37 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.916;DP=53;Dels=0.00;FS=8.116;HaplotypeScore=5.9281;MLEAC=3;MLEAF=0.375;MQ=24.91;MQ0=0;MQRankSum=-1.123;QD=1.01;ReadPosRankSum=-1.123;SB=-2.439e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:36:36,0,66 0/1:8,2:11:20:20,0,101 0/0:21,1:22:5:0,5,335 0/1:11,1:12:17:17,0,23 +chr12 54744286 . C G 132.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.781;DP=220;Dels=0.00;FS=19.135;HaplotypeScore=1.4703;MLEAC=3;MLEAF=0.375;MQ=22.83;MQ0=0;MQRankSum=2.865;QD=0.78;ReadPosRankSum=-3.003;SB=-1.315e-02 GT:AD:DP:GQ:PL 0/0:48,1:49:44:0,44,684 0/1:53,3:57:29:29,0,573 0/1:50,6:56:79:79,0,549 0/1:53,5:58:68:68,0,464 +chr12 55027086 . C T 44.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.178;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=4.1744;MLEAC=2;MLEAF=0.250;MQ=24.66;MQ0=0;MQRankSum=-0.102;QD=1.44;ReadPosRankSum=1.009;SB=-3.810e-04 GT:AD:DP:GQ:PL 0/1:12,3:15:58:58,0,152 0/0:16,0:16:24:0,24,245 0/1:12,3:15:28:28,0,258 0/0:15,0:15:21:0,21,220 +chr12 55945769 . C T 46.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.046;DP=135;Dels=0.00;FS=18.944;HaplotypeScore=0.8903;MLEAC=3;MLEAF=0.375;MQ=23.78;MQ0=0;MQRankSum=1.724;QD=0.49;ReadPosRankSum=-1.551;SB=0.464 GT:AD:DP:GQ:PL 0/0:39,1:40:18:0,18,197 0/1:34,2:36:24:24,0,356 0/1:39,3:42:46:46,0,344 0/1:16,1:17:20:20,0,93 +chr12 56075742 . C T 108.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.346;DP=137;Dels=0.00;FS=62.922;HaplotypeScore=1.2431;MLEAC=2;MLEAF=0.250;MQ=37.33;MQ0=0;MQRankSum=-2.673;QD=1.55;ReadPosRankSum=-1.379;SB=0.093 GT:AD:DP:GQ:PL 0/1:30,5:35:89:89,0,845 0/0:29,2:31:12:0,12,855 0/0:35,1:36:64:0,64,1087 0/1:30,4:35:61:61,0,768 +chr12 56086840 . C A 346.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.802;DP=75;Dels=0.00;FS=54.111;HaplotypeScore=1.7290;MLEAC=4;MLEAF=0.500;MQ=30.83;MQ0=0;MQRankSum=-2.912;QD=4.62;ReadPosRankSum=3.199;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,6:17:99:102,0,192 0/1:15,4:19:70:70,0,354 0/1:13,5:18:99:119,0,248 0/1:16,5:21:98:98,0,393 +chr12 56087056 . G C 38.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.520;DP=122;Dels=0.00;FS=51.528;HaplotypeScore=2.9140;MLEAC=2;MLEAF=0.250;MQ=29.27;MQ0=0;MQRankSum=-1.086;QD=0.59;ReadPosRankSum=-0.491;SB=0.039 GT:AD:DP:GQ:PL 0/0:32,1:33:34:0,34,647 0/1:27,4:31:24:24,0,496 0/0:22,1:23:22:0,22,466 0/1:31,4:35:56:56,0,484 +chr12 56094889 . T G 117.16 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.745;DP=129;Dels=0.01;FS=21.352;HaplotypeScore=2.9556;MLEAC=2;MLEAF=0.250;MQ=38.21;MQ0=0;MQRankSum=-1.850;QD=2.13;ReadPosRankSum=0.642;SB=-2.305e+00 GT:AD:DP:GQ:PL 0/1:25,3:28:19:19,0,747 0/0:32,2:34:8:0,8,939 0/0:39,0:39:90:0,90,1168 0/1:21,6:27:99:139,0,448 +chr12 56216229 . G C 180.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.789;DP=180;Dels=0.01;FS=13.659;HaplotypeScore=22.5980;MLEAC=4;MLEAF=0.500;MQ=29.91;MQ0=0;MQRankSum=-3.136;QD=1.00;ReadPosRankSum=0.844;SB=-1.330e-02 GT:AD:DP:GQ:PL 0/1:36,5:41:38:38,0,747 0/1:32,4:36:35:35,0,639 0/1:66,6:72:48:48,0,977 0/1:25,5:30:99:102,0,291 +chr12 56222422 . T C 73.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.828;DP=76;Dels=0.01;FS=2.390;HaplotypeScore=4.3386;MLEAC=3;MLEAF=0.375;MQ=28.41;MQ0=0;MQRankSum=-1.162;QD=2.31;ReadPosRankSum=-0.131;SB=-1.101e-02 GT:AD:DP:GQ:PL 0/1:10,3:13:56:56,0,229 0/0:17,1:18:0:0,0,229 0/0:24,1:25:45:0,45,506 0/1:14,5:19:57:57,0,261 +chr12 56295775 . C G 137.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.821;DP=190;Dels=0.00;FS=81.149;HaplotypeScore=8.1119;MLEAC=2;MLEAF=0.250;MQ=33.05;MQ0=0;MQRankSum=-5.510;QD=1.43;ReadPosRankSum=3.808;SB=-4.846e-01 GT:AD:DP:GQ:PL 0/0:45,4:49:65:0,65,1096 0/1:37,8:45:44:44,0,694 0/1:41,9:51:99:135,0,924 0/0:42,2:45:37:0,37,710 +chr12 56335281 . T G 54.43 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.499;DP=238;Dels=0.00;FS=120.019;HaplotypeScore=0.4984;MLEAC=3;MLEAF=0.375;MQ=32.88;MQ0=0;MQRankSum=-1.641;QD=0.32;ReadPosRankSum=1.040;SB=0.140 GT:AD:DP:GQ:PL 0/1:60,5:65:10:10,0,1730 0/0:63,5:68:22:0,22,1527 0/1:56,5:61:35:35,0,1432 0/1:39,5:44:52:52,0,997 +chr12 56383663 . G T 34.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.670;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=5.9174;MLEAC=3;MLEAF=0.375;MQ=21.35;MQ0=0;MQRankSum=2.169;QD=0.69;ReadPosRankSum=-1.249;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:13,1:14:3:32,3,0 0/1:16,1:17:8:8,0,138 0/0:26,1:27:30:0,30,292 0/1:17,2:19:38:38,0,123 +chr12 56420742 . C G 44.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.941;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=16.4387;MLEAC=4;MLEAF=0.500;MQ=22.78;MQ0=0;MQRankSum=0.766;QD=0.79;ReadPosRankSum=-1.379;SB=-2.360e-02 GT:AD:DP:GQ:PL 0/1:15,1:16:13:13,0,66 0/1:10,2:12:30:30,0,50 0/1:12,2:14:22:22,0,66 0/1:13,1:14:22:22,0,115 +chr12 56435929 rs1131017 C G 636.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.180;DB;DP=81;Dels=0.02;FS=1.305;HaplotypeScore=3.4505;MLEAC=3;MLEAF=0.375;MQ=28.34;MQ0=0;MQRankSum=0.169;QD=9.65;ReadPosRankSum=0.462;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:11,9:20:99:240,0,244 0/1:10,13:23:99:306,0,214 0/1:14,7:21:99:134,0,281 0/0:15,0:15:30:0,30,356 +chr12 56436447 . C T 325.09 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.282;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6365;MLEAC=5;MLEAF=0.625;MQ=27.89;MQ0=0;MQRankSum=0.471;QD=6.13;ReadPosRankSum=2.385;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:79:110,0,79 0/1:15,4:19:72:72,0,128 0/1:10,2:12:55:55,0,147 1/1:3,4:8:12:133,12,0 +chr12 56481636 . A C 32 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.705;DP=182;Dels=0.00;FS=11.392;HaplotypeScore=3.6675;MLEAC=1;MLEAF=0.125;MQ=34.16;MQ0=0;MQRankSum=-3.266;QD=0.74;ReadPosRankSum=0.227;SB=1.03 GT:AD:DP:GQ:PL 0/0:48,3:51:26:0,26,1136 0/0:38,1:39:58:0,58,925 0/0:45,4:49:34:0,34,1283 0/1:38,5:43:68:68,0,688 +chr12 56495668 . G T 103.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.531;DP=254;Dels=0.00;FS=25.017;HaplotypeScore=2.6256;MLEAC=1;MLEAF=0.125;MQ=37.45;MQ0=0;MQRankSum=-0.686;QD=1.65;ReadPosRankSum=-3.034;SB=0.149 GT:AD:DP:GQ:PL 0/0:63,3:66:58:0,58,1826 0/0:57,2:59:80:0,80,1692 0/0:65,1:66:99:0,165,2117 0/1:54,9:63:99:140,0,1291 +chr12 56527323 . A T 529.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.397;DP=256;Dels=0.00;FS=205.164;HaplotypeScore=8.9580;MLEAC=4;MLEAF=0.500;MQ=34.48;MQ0=0;MQRankSum=-4.946;QD=2.07;ReadPosRankSum=4.088;SB=-2.902e-01 GT:AD:DP:GQ:PL 0/1:57,10:67:99:133,0,1459 0/1:63,5:69:11:11,0,1634 0/1:55,15:70:99:283,0,1504 0/1:41,8:49:99:145,0,972 +chr12 56555190 . G T 82.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.711;DP=228;Dels=0.00;FS=54.225;HaplotypeScore=3.6622;MLEAC=2;MLEAF=0.250;MQ=26.51;MQ0=0;MQRankSum=3.520;QD=0.81;ReadPosRankSum=2.177;SB=-1.694e+00 GT:AD:DP:GQ:PL 0/1:48,5:53:67:67,0,642 0/0:55,1:58:52:0,52,730 0/0:64,3:67:3:0,3,669 0/1:46,3:49:56:56,0,399 +chr12 56647051 . G C 61.55 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.890;DP=86;Dels=0.01;FS=8.006;HaplotypeScore=23.2450;MLEAC=3;MLEAF=0.500;MQ=19.75;MQ0=0;MQRankSum=2.115;QD=0.93;ReadPosRankSum=-1.614;SB=-1.534e-01 GT:AD:DP:GQ:PL 0/1:13,1:14:13:13,0,70 0/1:22,3:25:69:69,0,125 0/1:25,1:26:18:18,0,73 ./. +chr12 56733565 . G A 87.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.270;DP=143;Dels=0.01;FS=60.684;HaplotypeScore=8.2266;MLEAC=2;MLEAF=0.250;MQ=31.37;MQ0=0;MQRankSum=-3.631;QD=1.35;ReadPosRankSum=0.829;SB=1.03 GT:AD:DP:GQ:PL 0/1:31,6:37:55:55,0,651 0/0:38,2:40:46:0,46,929 0/0:34,2:36:28:0,28,758 0/1:22,6:28:74:74,0,370 +chr12 56815281 rs2291738 T C 3328.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.232;DB;DP=223;Dels=0.00;FS=0.686;HaplotypeScore=0.9957;MLEAC=5;MLEAF=0.625;MQ=37.44;MQ0=0;MQRankSum=-5.758;QD=14.92;ReadPosRankSum=2.468;SB=-5.120e+02 GT:AD:DP:GQ:PL 0/1:40,23:63:99:719,0,1367 1/1:5,46:51:99:1674,103,0 0/1:31,22:53:99:665,0,1080 0/1:43,13:56:99:270,0,1449 +chr12 56956341 . C G 93.07 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.828;DP=87;Dels=0.00;FS=10.837;HaplotypeScore=8.7301;MLEAC=3;MLEAF=0.375;MQ=22.80;MQ0=0;MQRankSum=1.694;QD=1.41;ReadPosRankSum=1.064;SB=0.219 GT:AD:DP:GQ:PL 0/1:20,2:22:43:55,0,43 0/1:19,1:21:15:15,0,94 0/0:20,1:21:18:0,18,164 0/1:20,3:23:66:66,0,178 +chr12 57005994 . T A 151.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.438;DP=138;Dels=0.00;FS=28.941;HaplotypeScore=2.9742;MLEAC=3;MLEAF=0.375;MQ=35.81;MQ0=0;MQRankSum=-3.316;QD=1.42;ReadPosRankSum=-0.387;SB=0.018 GT:AD:DP:GQ:PL 0/0:29,2:31:8:0,8,679 0/1:29,5:34:66:66,0,785 0/1:43,7:50:99:108,0,1060 0/1:21,2:23:20:20,0,434 +chr12 57006813 . T A 127.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.826;DP=173;Dels=0.01;FS=13.933;HaplotypeScore=5.9171;MLEAC=2;MLEAF=0.250;MQ=34.03;MQ0=0;MQRankSum=1.079;QD=1.59;ReadPosRankSum=-2.281;SB=-2.063e+00 GT:AD:DP:GQ:PL 0/0:41,3:44:7:0,7,933 0/0:48,1:49:52:0,52,1039 0/1:35,4:39:63:63,0,778 0/1:33,6:39:99:105,0,681 +chr12 57111480 . T C 52.42 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.603;DP=81;Dels=0.04;FS=29.593;HaplotypeScore=5.4633;MLEAC=2;MLEAF=0.333;MQ=10.95;MQ0=0;MQRankSum=2.006;QD=1.19;ReadPosRankSum=-0.473;SB=0.656 GT:AD:DP:GQ:PL 0/0:12,1:14:6:0,6,51 0/1:23,1:25:17:17,0,64 ./. 0/1:13,4:17:37:73,0,37 +chr12 57167826 . A T 53.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.185;DP=135;Dels=0.00;FS=68.961;HaplotypeScore=5.3385;MLEAC=2;MLEAF=0.250;MQ=26.80;MQ0=0;MQRankSum=-1.790;QD=0.70;ReadPosRankSum=0.393;SB=-1.995e+00 GT:AD:DP:GQ:PL 0/1:24,6:30:77:77,0,367 0/0:26,4:30:6:0,6,514 0/1:43,3:46:17:17,0,573 0/0:27,2:29:16:0,16,622 +chr12 57335150 rs71459397 G A 110.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.175;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.8694;MLEAC=3;MLEAF=0.375;MQ=20.30;MQ0=0;MQRankSum=2.507;QD=5.51;ReadPosRankSum=-0.862;SB=-5.783e+01 GT:AD:DP:GQ:PL 0/0:6,0:6:6:0,6,65 0/1:8,1:9:33:33,0,36 0/1:5,1:6:17:19,0,17 0/1:2,3:5:12:100,0,12 +chr12 57486033 rs324020 A C 41.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.7558;MLEAC=4;MLEAF=1.00;MQ=17.09;MQ0=0;MQRankSum=1.026;QD=10.25;ReadPosRankSum=-1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:39,3,0 ./. 1/1:1,1:2:3:35,3,0 ./. +chr12 57495995 . C A 293.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.119;DP=96;Dels=0.04;FS=2.678;HaplotypeScore=8.3550;MLEAC=4;MLEAF=0.500;MQ=27.19;MQ0=0;MQRankSum=-3.615;QD=3.06;ReadPosRankSum=2.536;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,7:23:78:78,0,339 0/1:16,9:25:99:105,0,368 0/1:18,5:23:51:51,0,321 0/1:13,8:21:99:102,0,127 +chr12 57496540 . G A 74.34 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.683;DP=23;Dels=0.00;FS=6.767;HaplotypeScore=1.4633;MLEAC=3;MLEAF=0.500;MQ=23.30;MQ0=0;MQRankSum=-0.788;QD=4.13;ReadPosRankSum=0.263;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,1:4:24:26,0,24 0/1:3,2:5:19:19,0,74 0/1:4,5:9:34:68,0,34 ./. +chr12 57535276 . G T 37.70 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.236;DP=78;Dels=0.00;FS=11.949;HaplotypeScore=6.7830;MLEAC=2;MLEAF=0.250;MQ=30.98;MQ0=0;MQRankSum=-2.241;QD=0.97;ReadPosRankSum=0.259;SB=10.22 GT:AD:DP:GQ:PL 0/1:16,4:21:72:72,0,351 0/1:17,1:18:2:2,0,252 0/0:22,0:22:48:0,48,616 0/0:16,0:17:15:0,15,175 +chr12 57548093 . T C 225.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.078;DP=141;Dels=0.01;FS=2.360;HaplotypeScore=8.8486;MLEAC=2;MLEAF=0.250;MQ=30.13;MQ0=0;MQRankSum=-0.006;QD=3.53;ReadPosRankSum=0.086;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:32,1:34:13:0,13,375 0/1:24,8:32:99:167,0,324 0/0:42,1:43:42:0,42,606 0/1:25,5:31:99:100,0,175 +chr12 57573813 . T G 120.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.994;DP=212;Dels=0.00;FS=193.645;HaplotypeScore=4.8956;MLEAC=3;MLEAF=0.375;MQ=26.84;MQ0=0;MQRankSum=-1.644;QD=0.77;ReadPosRankSum=-0.821;SB=0.739 GT:AD:DP:GQ:PL 0/1:44,7:51:87:87,0,792 0/1:49,11:60:55:55,0,981 0/0:51,4:55:47:0,47,1256 0/1:40,5:46:22:22,0,797 +chr12 57590783 . T C 51.16 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.591;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=2.2504;MLEAC=4;MLEAF=0.667;MQ=20.40;MQ0=0;MQRankSum=0.295;QD=2.22;ReadPosRankSum=1.120;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:3,2:5:6:52,6,0 0/1:7,1:8:19:19,0,57 0/1:6,3:9:17:20,0,17 +chr12 57592901 . T A 173.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.815;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6164;MLEAC=2;MLEAF=0.250;MQ=30.42;MQ0=0;MQRankSum=-2.036;QD=2.67;ReadPosRankSum=-0.448;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:38,2:40:40:0,40,919 0/1:31,8:39:99:121,0,564 0/0:37,2:39:58:0,58,927 0/1:20,6:26:94:94,0,423 +chr12 57600206 . G A 34.34 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.352;DP=32;Dels=0.00;FS=2.884;HaplotypeScore=9.2563;MLEAC=5;MLEAF=0.625;MQ=16.69;MQ0=0;MQRankSum=0.955;QD=1.32;ReadPosRankSum=-0.754;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,1:6:3:0,3,32 1/1:4,3:7:3:27,3,0 0/1:12,1:13:18:18,0,67 1/1:5,1:6:3:31,3,0 +chr12 57628067 . C G 406.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.874;DP=188;Dels=0.01;FS=203.294;HaplotypeScore=17.3756;MLEAC=4;MLEAF=0.500;MQ=29.26;MQ0=0;MQRankSum=-5.163;QD=2.16;ReadPosRankSum=1.977;SB=1.05 GT:AD:DP:GQ:PL 0/1:36,11:47:99:137,0,688 0/1:32,15:47:99:149,0,786 0/1:45,10:56:99:145,0,930 0/1:32,4:37:18:18,0,687 +chr12 57865038 . G T 102.40 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.219;DP=110;Dels=0.02;FS=12.904;HaplotypeScore=9.2385;MLEAC=1;MLEAF=0.125;MQ=29.42;MQ0=0;MQRankSum=1.209;QD=4.65;ReadPosRankSum=0.485;SB=-4.659e+00 GT:AD:DP:GQ:PL 0/0:19,1:21:5:0,5,336 0/0:34,2:36:16:0,16,398 0/0:31,0:31:45:0,45,494 0/1:15,5:20:77:138,0,77 +chr12 57872485 . C T 152.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.252;DP=91;Dels=0.03;FS=4.938;HaplotypeScore=11.5431;MLEAC=4;MLEAF=0.500;MQ=23.50;MQ0=0;MQRankSum=-1.558;QD=1.68;ReadPosRankSum=-0.099;SB=-1.104e-01 GT:AD:DP:GQ:PL 0/1:15,4:19:39:39,0,287 0/1:21,4:25:15:15,0,316 0/1:19,5:24:91:91,0,331 0/1:16,4:20:50:50,0,84 +chr12 57894121 . T A 52.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.920;DP=393;Dels=0.00;FS=31.937;HaplotypeScore=18.7908;MLEAC=2;MLEAF=0.250;MQ=34.54;MQ0=0;MQRankSum=3.459;QD=0.27;ReadPosRankSum=-1.561;SB=-1.566e-02 GT:AD:DP:GQ:PL 0/0:109,2:111:99:0,201,3084 0/0:87,2:89:99:0,135,2404 0/1:92,8:100:36:36,0,2374 0/1:86,7:93:58:58,0,2105 +chr12 57975570 rs775247 A G 2762.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.456;DB;DP=83;Dels=0.00;FS=31.829;HaplotypeScore=1.0059;MLEAC=8;MLEAF=1.00;MQ=34.18;MQ0=0;MQRankSum=4.614;QD=33.29;ReadPosRankSum=-0.530;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,20:23:60:801,60,0 1/1:4,13:17:36:460,36,0 1/1:1,19:20:57:736,57,0 1/1:2,21:23:63:805,63,0 +chr12 57977040 rs775250 C A 73.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.871;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.8654;MLEAC=3;MLEAF=0.375;MQ=20.80;MQ0=0;MQRankSum=-0.420;QD=3.33;ReadPosRankSum=1.969;SB=-2.202e+01 GT:AD:DP:GQ:PL 0/1:6,3:9:14:14,0,115 0/0:4,0:4:6:0,6,51 0/1:4,2:7:18:49,0,18 0/1:3,3:6:19:52,0,19 +chr12 58142850 rs2069507 A G 542.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.471;DB;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.4997;MLEAC=3;MLEAF=0.375;MQ=37.04;MQ0=0;MQRankSum=-2.799;QD=9.52;ReadPosRankSum=0.704;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,7:16:99:218,0,197 0/0:21,0:21:51:0,51,725 0/1:16,6:22:99:134,0,544 0/1:10,9:19:99:234,0,199 +chr12 58163372 . T A 381.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.430;DP=136;Dels=0.00;FS=38.105;HaplotypeScore=2.4002;MLEAC=3;MLEAF=0.375;MQ=37.81;MQ0=0;MQRankSum=0.959;QD=3.82;ReadPosRankSum=0.974;SB=2.88 GT:AD:DP:GQ:PL 0/1:27,6:33:99:119,0,569 0/1:28,5:33:86:86,0,696 0/0:34,2:36:25:0,25,797 0/1:26,8:34:99:220,0,514 +chr12 58203773 . G A 30.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.971;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=37.19;MQ0=0;MQRankSum=-1.771;QD=2.31;ReadPosRankSum=2.372;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:13:66:66,0,336 0/0:6,0:6:15:0,15,195 0/0:9,0:9:24:0,24,325 0/0:5,0:5:15:0,15,182 +chr12 58204200 . G C 133.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.344;DP=155;Dels=0.01;FS=82.495;HaplotypeScore=3.4303;MLEAC=4;MLEAF=0.500;MQ=36.48;MQ0=0;MQRankSum=-2.784;QD=0.86;ReadPosRankSum=2.139;SB=-1.263e-02 GT:AD:DP:GQ:PL 0/1:34,4:38:39:39,0,761 0/1:33,4:37:48:48,0,695 0/1:38,5:43:47:47,0,798 0/1:31,5:36:42:42,0,680 +chr12 59277461 . A G 35.04 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.639;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4204;MLEAC=3;MLEAF=0.375;MQ=24.69;MQ0=0;MQRankSum=2.128;QD=0.95;ReadPosRankSum=0.269;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:24:0,24,274 0/1:10,2:13:33:33,0,98 0/1:13,1:14:6:6,0,173 1/1:9,1:10:3:39,3,0 +chr12 59313248 rs12426969 G A 1507.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.790;DB;DP=136;Dels=0.02;FS=7.078;HaplotypeScore=1.6951;MLEAC=3;MLEAF=0.375;MQ=37.00;MQ0=0;MQRankSum=-2.828;QD=15.08;ReadPosRankSum=0.021;SB=-4.620e+02 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,102,1290 0/1:18,18:36:99:572,0,539 0/1:13,23:37:99:725,0,348 0/1:16,8:24:99:254,0,362 +chr12 62940607 . A C 46.38 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.249;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=0.250;MQ=27.24;MQ0=0;MQRankSum=1.173;QD=1.72;ReadPosRankSum=-0.533;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:72:72,0,131 0/0:13,0:13:9:0,9,81 0/0:16,0:16:18:0,18,202 0/1:6,1:7:15:15,0,46 +chr12 63161143 rs337522 C T 43.01 . AC=4;AF=1.00;AN=4;DB;DP=9;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=16.73;MQ0=0;QD=6.14;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,1:3:3:42,3,0 1/1:3,1:4:3:34,3,0 ./. +chr12 64458983 . A T 41.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.765;DP=69;Dels=0.01;FS=40.525;HaplotypeScore=3.4901;MLEAC=1;MLEAF=0.125;MQ=33.12;MQ0=0;MQRankSum=-0.515;QD=3.23;ReadPosRankSum=0.922;SB=-3.792e+00 GT:AD:DP:GQ:PL 0/1:10,3:13:78:78,0,204 0/0:13,0:13:36:0,36,434 0/0:25,1:26:30:0,30,649 0/0:16,0:16:30:0,30,366 +chr12 64536328 . G C 207.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.374;DP=196;Dels=0.00;FS=118.407;HaplotypeScore=5.6588;MLEAC=4;MLEAF=0.500;MQ=37.22;MQ0=0;MQRankSum=-5.157;QD=1.06;ReadPosRankSum=1.088;SB=-1.248e-01 GT:AD:DP:GQ:PL 0/1:40,7:47:97:97,0,1183 0/1:46,5:51:15:15,0,1213 0/1:54,6:60:51:51,0,1309 0/1:32,6:38:87:87,0,751 +chr12 64678416 rs12581905 G A 981.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.139;DB;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.4986;MLEAC=3;MLEAF=0.375;MQ=37.53;MQ0=0;MQRankSum=-1.140;QD=15.10;ReadPosRankSum=1.363;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,0:22:66:0,66,849 0/1:12,14:26:99:454,0,355 0/1:13,11:24:99:376,0,370 0/1:9,6:15:99:195,0,182 +chr12 64732294 rs11609829 A G 549.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.624;DB;DP=100;Dels=0.01;FS=3.324;HaplotypeScore=2.2331;MLEAC=4;MLEAF=0.500;MQ=26.31;MQ0=0;MQRankSum=0.775;QD=5.50;ReadPosRankSum=1.252;SB=-1.860e+02 GT:AD:DP:GQ:PL 0/1:22,9:31:99:252,0,411 0/1:16,11:27:99:141,0,309 0/1:14,6:20:99:122,0,112 0/1:16,5:21:77:77,0,247 +chr12 64808803 . A G 275.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.668;DP=97;Dels=0.02;FS=2.588;HaplotypeScore=7.8258;MLEAC=3;MLEAF=0.375;MQ=28.15;MQ0=0;MQRankSum=-3.244;QD=3.73;ReadPosRankSum=-0.329;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,3:23:14:0,14,386 0/1:22,8:30:99:150,0,466 0/1:22,7:29:71:71,0,398 0/1:8,5:13:57:98,0,57 +chr12 65130846 . A T 59.43 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.243;DP=93;Dels=0.03;FS=38.787;HaplotypeScore=17.7772;MLEAC=2;MLEAF=0.250;MQ=28.95;MQ0=0;MQRankSum=-2.066;QD=1.10;ReadPosRankSum=1.533;SB=-2.278e+00 GT:AD:DP:GQ:PL 0/1:14,4:18:42:42,0,404 0/0:19,1:20:1:0,1,293 0/1:30,5:35:57:57,0,603 0/0:16,1:17:21:0,21,212 +chr12 65813436 . T A 43.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.039;DP=121;Dels=0.03;FS=38.610;HaplotypeScore=13.8383;MLEAC=2;MLEAF=0.250;MQ=13.97;MQ0=0;MQRankSum=1.904;QD=0.70;ReadPosRankSum=3.116;SB=-8.089e-01 GT:AD:DP:GQ:PL 0/1:20,6:26:73:73,0,100 0/0:25,2:27:12:0,12,109 0/1:31,4:35:11:11,0,103 0/0:25,4:29:15:0,15,142 +chr12 68537187 . T A 36.47 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.455;DP=29;Dels=0.03;FS=12.352;HaplotypeScore=5.9833;MLEAC=4;MLEAF=0.500;MQ=19.95;MQ0=0;MQRankSum=1.855;QD=1.74;ReadPosRankSum=-0.805;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,3:6:35:42,0,35 0/0:6,1:7:3:0,3,44 1/1:6,1:8:3:22,3,0 0/1:6,1:7:14:14,0,77 +chr12 69080903 . G A 164.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.493;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.1025;MLEAC=2;MLEAF=0.250;MQ=36.91;MQ0=0;MQRankSum=-0.319;QD=2.57;ReadPosRankSum=2.123;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,5:33:99:125,0,460 0/0:35,1:36:29:0,29,752 0/0:40,2:42:22:0,22,839 0/1:27,4:31:81:81,0,374 +chr12 69099826 . A C 108.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.465;DP=225;Dels=0.00;FS=162.349;HaplotypeScore=4.0572;MLEAC=2;MLEAF=0.250;MQ=15.46;MQ0=0;MQRankSum=-0.311;QD=0.89;ReadPosRankSum=1.940;SB=0.519 GT:AD:DP:GQ:PL 0/1:50,10:60:49:49,0,210 0/0:45,11:56:27:0,27,322 0/1:54,8:62:99:101,0,270 0/0:43,3:46:30:0,30,349 +chr12 69218190 . G C 98.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.877;DP=104;Dels=0.00;FS=13.899;HaplotypeScore=4.2966;MLEAC=3;MLEAF=0.375;MQ=30.09;MQ0=0;MQRankSum=1.143;QD=1.22;ReadPosRankSum=-1.497;SB=0.061 GT:AD:DP:GQ:PL 0/1:21,3:24:72:72,0,298 0/1:27,2:29:41:41,0,306 0/1:26,2:28:29:29,0,278 0/0:23,0:23:18:0,18,179 +chr12 69260797 . G T 43.29 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.557;DP=84;Dels=0.01;FS=1.656;HaplotypeScore=19.9003;MLEAC=1;MLEAF=0.125;MQ=25.63;MQ0=0;MQRankSum=-1.186;QD=1.67;ReadPosRankSum=0.757;SB=-7.687e+00 GT:AD:DP:GQ:PL 0/0:20,1:21:30:0,30,352 0/1:22,4:26:79:79,0,194 0/0:25,2:28:33:0,33,332 0/0:8,0:8:6:0,6,49 +chr12 69652557 . T A 32.44 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.234;DP=132;Dels=0.02;FS=48.165;HaplotypeScore=4.7550;MLEAC=2;MLEAF=0.250;MQ=26.41;MQ0=0;MQRankSum=-4.304;QD=0.50;ReadPosRankSum=2.357;SB=-5.852e+00 GT:AD:DP:GQ:PL 0/0:21,2:23:2:0,2,545 0/1:17,10:27:65:65,0,339 0/0:36,7:43:21:0,21,821 0/1:32,4:36:4:4,0,576 +chr12 70147464 rs10735956 T C 3606.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.867;DB;DP=100;Dels=0.00;FS=25.241;HaplotypeScore=0.2500;MLEAC=8;MLEAF=1.00;MQ=36.81;MQ0=0;MQRankSum=2.248;QD=36.06;ReadPosRankSum=1.712;SB=-4.542e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:37:886,37,0 1/1:0,32:32:96:1217,96,0 1/1:2,28:30:84:1087,84,0 1/1:2,12:14:8:416,8,0 +chr12 70330087 rs813147 A G 817.04 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.247;DB;DP=96;Dels=0.03;FS=2.993;HaplotypeScore=13.8467;MLEAC=5;MLEAF=0.625;MQ=27.00;MQ0=0;MQRankSum=-3.169;QD=8.51;ReadPosRankSum=0.569;SB=-2.963e+02 GT:AD:DP:GQ:PL 0/1:8,13:21:7:221,0,7 0/1:29,6:35:42:42,0,781 1/1:5,14:19:33:358,33,0 1/1:5,11:18:24:241,24,0 +chr12 70382545 rs1732671 A G 78.05 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.067;DB;DP=17;Dels=0.00;FS=5.756;HaplotypeScore=0.6241;MLEAC=5;MLEAF=0.625;MQ=18.01;MQ0=0;MQRankSum=1.200;QD=5.20;ReadPosRankSum=0.133;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,39 0/1:7,2:9:28:31,0,28 1/1:0,2:2:6:67,6,0 1/1:3,1:4:3:23,3,0 +chr12 71003163 . C G 120.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.571;DP=129;Dels=0.00;FS=6.808;HaplotypeScore=6.2452;MLEAC=3;MLEAF=0.375;MQ=30.95;MQ0=0;MQRankSum=-2.881;QD=1.28;ReadPosRankSum=4.791;SB=0.863 GT:AD:DP:GQ:PL 0/1:21,4:25:56:56,0,408 0/1:31,5:36:68:68,0,500 0/1:29,4:33:39:39,0,628 0/0:32,3:35:7:0,7,685 +chr12 71531639 rs2270586 G A 159.84 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.588;DB;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=0.9742;MLEAC=4;MLEAF=0.667;MQ=30.16;MQ0=0;MQRankSum=-1.905;QD=8.41;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:51:51,0,73 0/1:7,1:8:15:15,0,204 1/1:1,4:5:12:135,12,0 ./. +chr12 72058416 rs3741691 G T 190.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.614;DB;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.8553;MLEAC=1;MLEAF=0.125;MQ=33.46;MQ0=0;MQRankSum=-2.104;QD=7.07;ReadPosRankSum=1.210;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,10:27:99:227,0,420 0/0:41,0:41:99:0,114,1407 0/0:31,0:31:87:0,87,1069 0/0:25,0:25:69:0,69,844 +chr12 72090133 . A T 60.06 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.545;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.6594;MLEAC=3;MLEAF=0.375;MQ=22.14;MQ0=0;MQRankSum=-0.754;QD=1.50;ReadPosRankSum=3.479;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,4:15:59:59,0,94 0/1:13,3:16:28:28,0,169 0/1:7,2:9:14:14,0,58 0/0:6,0:6:3:0,3,32 +chr12 74686416 rs7957113 T C 367.16 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.470;DB;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=30.88;MQ0=0;MQRankSum=1.470;QD=24.48;ReadPosRankSum=1.203;SB=-4.282e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:105,9,0 1/1:2,1:3:3:40,3,0 1/1:0,2:2:6:72,6,0 1/1:1,5:6:15:188,15,0 +chr12 75715330 rs10879901 C A 160.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.861;DB;DP=142;Dels=0.01;FS=27.247;HaplotypeScore=3.1751;MLEAC=3;MLEAF=0.375;MQ=37.73;MQ0=0;MQRankSum=-3.954;QD=1.77;ReadPosRankSum=0.265;SB=-1.155e+00 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,144,1925 0/1:33,8:41:99:171,0,955 0/1:40,4:44:7:7,0,1230 0/1:3,1:4:25:25,0,36 +chr12 75716675 . A T 51.33 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.011;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.4818;MLEAC=2;MLEAF=0.333;MQ=25.32;MQ0=0;MQRankSum=-0.233;QD=1.60;ReadPosRankSum=2.100;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:39:39,0,60 0/1:14,4:18:51:51,0,194 0/0:11,0:11:18:0,18,189 ./. +chr12 75895619 rs2306391 T C 878.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.849;DB;DP=250;Dels=0.00;FS=7.143;HaplotypeScore=4.5712;MLEAC=3;MLEAF=0.375;MQ=28.87;MQ0=0;MQRankSum=-1.102;QD=5.08;ReadPosRankSum=1.114;SB=-2.510e+02 GT:AD:DP:GQ:PL 0/1:54,16:70:99:305,0,1316 0/0:77,0:77:99:0,213,2408 0/1:54,25:79:99:476,0,1333 0/1:18,6:24:99:141,0,320 +chr12 76447113 . T A 221.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.835;DP=135;Dels=0.00;FS=36.419;HaplotypeScore=15.5738;MLEAC=4;MLEAF=0.500;MQ=17.43;MQ0=0;MQRankSum=3.243;QD=1.64;ReadPosRankSum=-0.587;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:40,6:48:92:92,0,151 0/1:24,7:31:12:99,0,12 0/1:42,3:45:54:54,0,182 0/1:9,2:11:19:19,0,19 +chr12 76461046 rs11614925 A G 341.22 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.963;DB;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.2500;MLEAC=2;MLEAF=0.250;MQ=35.76;MQ0=0;MQRankSum=-0.907;QD=13.12;ReadPosRankSum=-0.961;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:36:0,36,482 0/1:7,5:12:99:156,0,148 0/1:7,7:14:99:226,0,183 0/0:2,0:2:6:0,6,63 +chr12 76531933 . T A 140.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.422;DP=68;Dels=0.00;FS=30.754;HaplotypeScore=1.2337;MLEAC=3;MLEAF=0.375;MQ=32.51;MQ0=0;MQRankSum=-1.057;QD=2.66;ReadPosRankSum=-0.261;SB=2.04 GT:AD:DP:GQ:PL 0/1:15,3:18:52:52,0,281 0/1:12,4:16:94:94,0,193 0/1:16,3:19:38:38,0,342 0/0:15,0:15:30:0,30,377 +chr12 76741976 . G A 55.24 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.340;DP=44;Dels=0.05;FS=27.416;HaplotypeScore=9.8760;MLEAC=3;MLEAF=0.375;MQ=26.49;MQ0=0;MQRankSum=0.661;QD=2.30;ReadPosRankSum=0.941;SB=-2.362e+00 GT:AD:DP:GQ:PL 0/1:5,2:7:38:38,0,127 0/0:14,1:15:1:0,1,236 0/1:13,3:16:56:56,0,240 0/0:4,0:4:6:0,6,63 +chr12 77427802 . A C 70.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.565;DP=87;Dels=0.01;FS=69.875;HaplotypeScore=4.6719;MLEAC=4;MLEAF=0.500;MQ=29.41;MQ0=0;MQRankSum=-1.426;QD=0.81;ReadPosRankSum=-0.679;SB=-2.723e+00 GT:AD:DP:GQ:PL 0/1:19,2:21:12:12,0,362 0/1:21,3:25:40:40,0,399 0/1:20,4:24:57:57,0,238 0/1:15,1:16:2:2,0,297 +chr12 78400884 rs34276383 G A 1790.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.279;DB;DP=220;Dels=0.00;FS=4.077;HaplotypeScore=0.8909;MLEAC=3;MLEAF=0.375;MQ=38.02;MQ0=0;MQRankSum=-1.900;QD=12.18;ReadPosRankSum=1.633;SB=-5.740e+02 GT:AD:DP:GQ:PL 0/1:24,31:55:99:1050,0,718 0/0:73,0:73:99:0,208,2683 0/1:42,19:61:99:552,0,1440 0/1:23,8:31:99:232,0,658 +chr12 78511976 . C T 71.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.964;DP=225;Dels=0.02;FS=217.932;HaplotypeScore=22.7432;MLEAC=3;MLEAF=0.375;MQ=30.80;MQ0=0;MQRankSum=-4.297;QD=0.42;ReadPosRankSum=-0.133;SB=-5.426e-01 GT:AD:DP:GQ:PL 0/1:53,7:61:29:29,0,1476 0/1:46,8:54:32:32,0,1154 0/1:47,8:55:54:54,0,1071 0/0:48,2:50:45:0,45,1119 +chr12 78540048 . G T 39.30 . AC=2;AF=0.333;AN=6;BaseQRankSum=-2.003;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.2466;MLEAC=3;MLEAF=0.500;MQ=28.42;MQ0=0;MQRankSum=-0.390;QD=1.79;ReadPosRankSum=1.836;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,1:11:24:24,0,122 0/1:8,3:11:51:51,0,114 0/0:10,1:11:0:0,0,236 ./. +chr12 78542699 rs366527 T C 1007.57 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.468;DB;DP=79;Dels=0.00;FS=1.588;HaplotypeScore=1.6223;MLEAC=4;MLEAF=0.500;MQ=30.78;MQ0=0;MQRankSum=1.032;QD=19.01;ReadPosRankSum=0.647;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/0:26,0:26:69:0,69,818 1/1:0,22:22:63:736,63,0 0/1:16,10:26:99:294,0,334 0/1:4,1:5:26:26,0,87 +chr12 78571562 . C T 43.57 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.121;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.2235;MLEAC=1;MLEAF=0.125;MQ=35.41;MQ0=0;MQRankSum=-4.088;QD=1.56;ReadPosRankSum=3.303;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:31,2:33:3:0,3,727 0/0:35,1:36:67:0,67,1173 0/1:22,6:28:79:79,0,624 0/0:20,1:21:29:0,29,570 +chr12 79689789 rs143576372 C T 93.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.653;DB;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.4577;MLEAC=1;MLEAF=0.125;MQ=36.24;MQ0=0;MQRankSum=-1.758;QD=5.53;ReadPosRankSum=0.448;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,5:17:99:130,0,348 0/0:22,0:22:63:0,63,790 0/0:22,0:22:63:0,63,823 0/0:14,0:14:33:0,33,437 +chr12 80616090 . G T 36.66 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.591;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.4741;MLEAC=1;MLEAF=0.125;MQ=24.10;MQ0=0;MQRankSum=-0.789;QD=3.06;ReadPosRankSum=1.676;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:71:71,0,75 0/0:7,0:7:6:0,6,58 0/0:3,2:5:3:0,3,29 0/0:5,0:5:3:0,3,29 +chr12 80633279 . A C 42.90 . AC=2;AF=0.333;AN=6;BaseQRankSum=-2.320;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.1889;MLEAC=2;MLEAF=0.333;MQ=25.15;MQ0=0;MQRankSum=-1.718;QD=0.95;ReadPosRankSum=2.620;SB=30.27 GT:AD:DP:GQ:PL 0/1:19,3:22:5:5,0,404 0/1:18,5:23:73:73,0,157 0/0:18,3:21:9:0,9,337 ./. +chr12 80733101 . T A 106.27 . AC=5;AF=0.833;AN=6;BaseQRankSum=2.629;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=19.3565;MLEAC=5;MLEAF=0.833;MQ=16.43;MQ0=0;MQRankSum=2.194;QD=1.77;ReadPosRankSum=-2.866;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:9,6:15:6:47,6,0 0/1:15,7:24:51:66,0,51 1/1:17,3:21:3:32,3,0 ./. +chr12 80762246 rs10778730 G A 428.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.598;DB;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.2487;MLEAC=4;MLEAF=0.500;MQ=35.75;MQ0=0;MQRankSum=-2.989;QD=13.39;ReadPosRankSum=0.559;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:85:85,0,426 1/1:2,9:12:27:324,27,0 0/0:12,0:12:33:0,33,448 0/1:2,2:4:20:68,0,20 +chr12 81102565 . A C 100.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.180;DP=75;Dels=0.00;FS=2.472;HaplotypeScore=6.1760;MLEAC=3;MLEAF=0.375;MQ=25.16;MQ0=0;MQRankSum=-1.423;QD=1.70;ReadPosRankSum=-0.311;SB=-7.669e-01 GT:AD:DP:GQ:PL 0/1:13,5:18:84:84,0,217 0/1:12,4:16:53:53,0,153 0/1:22,3:25:5:5,0,299 0/0:14,2:16:18:0,18,188 +chr12 81661113 . A C 41.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.355;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3984;MLEAC=2;MLEAF=0.250;MQ=22.85;MQ0=0;MQRankSum=-0.321;QD=1.38;ReadPosRankSum=1.234;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,1:22:12:0,12,116 0/0:17,1:18:9:0,9,70 0/1:21,5:26:57:57,0,123 1/1:3,1:4:3:27,3,0 +chr12 83444839 . G T 38.45 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.372;DP=60;Dels=0.03;FS=0.000;HaplotypeScore=26.7968;MLEAC=2;MLEAF=0.333;MQ=21.42;MQ0=0;MQRankSum=0.454;QD=1.37;ReadPosRankSum=-0.124;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:10:10,0,78 0/0:14,0:14:15:0,15,135 ./. 0/1:9,4:14:10:66,0,10 +chr12 83702783 rs10746275 C A 33.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=3;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=23.90;MQ0=0;MQRankSum=0.736;QD=11.01;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:27,3,0 ./. 1/1:0,1:1:3:39,3,0 +chr12 85257359 . A T 206.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.440;DP=107;Dels=0.03;FS=17.924;HaplotypeScore=11.0456;MLEAC=4;MLEAF=0.500;MQ=25.85;MQ0=0;MQRankSum=-2.975;QD=1.93;ReadPosRankSum=-2.267;SB=-1.192e-02 GT:AD:DP:GQ:PL 0/1:21,6:27:99:119,0,285 0/1:23,5:28:47:47,0,339 0/1:37,6:44:49:49,0,537 0/1:3,2:5:17:34,0,17 +chr12 85431923 . T A 212.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.382;DP=52;Dels=0.00;FS=17.479;HaplotypeScore=2.0551;MLEAC=2;MLEAF=0.250;MQ=28.19;MQ0=0;MQRankSum=1.445;QD=6.24;ReadPosRankSum=2.309;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,5:17:99:114,0,136 0/1:11,6:17:99:138,0,127 0/0:14,0:14:12:0,12,112 0/0:4,0:4:3:0,3,32 +chr12 85515514 . C T 144.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.835;DP=160;Dels=0.00;FS=87.529;HaplotypeScore=5.2797;MLEAC=4;MLEAF=0.500;MQ=34.87;MQ0=0;MQRankSum=-1.671;QD=0.91;ReadPosRankSum=0.888;SB=-2.902e-01 GT:AD:DP:GQ:PL 0/1:34,4:38:54:54,0,867 0/1:44,6:50:73:73,0,1137 0/1:45,3:48:11:11,0,986 0/1:20,4:24:49:49,0,443 +chr12 88624761 rs11104770 T C 236.16 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.192;DB;DP=22;Dels=0.00;FS=22.330;HaplotypeScore=1.5653;MLEAC=8;MLEAF=1.00;MQ=16.54;MQ0=0;MQRankSum=2.192;QD=10.73;ReadPosRankSum=0.066;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:3:24,3,0 1/1:3,4:7:9:73,9,0 1/1:0,6:6:15:129,15,0 1/1:2,5:7:6:48,6,0 +chr12 89918219 . T C 215.51 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.175;DP=98;Dels=0.00;FS=100.801;HaplotypeScore=1.2332;MLEAC=4;MLEAF=0.500;MQ=30.22;MQ0=0;MQRankSum=-1.008;QD=2.20;ReadPosRankSum=1.236;SB=-7.660e-01 GT:AD:DP:GQ:PL 0/1:21,8:29:99:193,0,449 0/1:19,2:21:16:16,0,396 0/1:24,2:26:6:6,0,584 0/1:18,4:22:42:42,0,242 +chr12 89992896 . G A 153.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.393;DP=175;Dels=0.00;FS=31.887;HaplotypeScore=0.9944;MLEAC=3;MLEAF=0.375;MQ=35.07;MQ0=0;MQRankSum=0.285;QD=1.15;ReadPosRankSum=-1.142;SB=-1.136e+00 GT:AD:DP:GQ:PL 0/1:43,3:46:6:6,0,925 0/0:39,2:41:9:0,9,909 0/1:39,4:43:43:43,0,751 0/1:38,7:45:99:146,0,677 +chr12 90013901 . T G 35.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.574;DP=204;Dels=0.00;FS=12.760;HaplotypeScore=1.4099;MLEAC=1;MLEAF=0.125;MQ=38.13;MQ0=0;MQRankSum=-1.744;QD=1.71;ReadPosRankSum=-1.054;SB=-8.704e-03 GT:AD:DP:GQ:PL 0/0:60,1:61:99:0,143,2170 0/0:63,2:65:89:0,89,1984 0/0:56,1:57:99:0,124,1947 0/1:17,4:21:72:72,0,627 +chr12 92821860 rs11284604 CT C 3017.06 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.923;DB;DP=96;FS=0.000;HaplotypeScore=21.1521;MLEAC=6;MLEAF=0.750;MQ=35.71;MQ0=0;MQRankSum=-1.811;QD=31.43;ReadPosRankSum=1.411;SB=-2.249e+02 GT:AD:DP:GQ:PL 0/1:17,8:24:99:428,0,478 1/1:8,24:32:30:1252,30,0 1/1:8,20:28:44:1100,44,0 0/1:4,5:9:13:292,0,13 +chr12 93205112 . A C 69.70 . AC=1;AF=0.167;AN=6;BaseQRankSum=-1.938;DP=88;Dels=0.00;FS=13.304;HaplotypeScore=6.9991;MLEAC=1;MLEAF=0.167;MQ=29.30;MQ0=0;MQRankSum=-0.308;QD=2.32;ReadPosRankSum=-0.050;SB=-5.429e+00 GT:AD:DP:GQ:PL 0/0:23,0:24:42:0,42,508 0/0:30,2:32:0:0,0,704 0/1:24,5:30:99:103,0,304 ./. +chr12 93252188 rs7138228 A T 178.34 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.801;DB;DP=81;Dels=0.00;FS=9.007;HaplotypeScore=0.8189;MLEAC=2;MLEAF=0.250;MQ=17.69;MQ0=0;MQRankSum=-0.182;QD=4.46;ReadPosRankSum=2.214;SB=-5.644e+01 GT:AD:DP:GQ:PL 0/1:11,11:22:98:105,0,98 0/1:12,6:18:9:114,0,9 0/0:24,3:27:24:0,24,222 0/0:10,4:14:6:0,6,61 +chr12 93252491 rs1979803 G T 835.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.698;DB;DP=106;Dels=0.00;FS=0.791;HaplotypeScore=1.5209;MLEAC=4;MLEAF=0.500;MQ=27.40;MQ0=0;MQRankSum=1.179;QD=7.88;ReadPosRankSum=1.627;SB=-1.920e+02 GT:AD:DP:GQ:PL 0/1:19,11:30:99:172,0,407 0/1:17,7:24:99:174,0,173 0/1:19,16:35:99:341,0,213 0/1:7,10:17:99:191,0,99 +chr12 94984896 rs7975236 C T 451.14 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.690;DB;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.9759;MLEAC=6;MLEAF=0.750;MQ=25.65;MQ0=0;MQRankSum=-2.612;QD=9.60;ReadPosRankSum=-0.447;SB=-3.272e+01 GT:AD:DP:GQ:PL 0/1:10,3:13:46:46,0,227 0/1:7,3:10:58:58,0,109 1/1:2,14:16:21:252,21,0 1/1:1,6:7:12:141,12,0 +chr12 95604232 . T C 611.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.671;DP=174;Dels=0.01;FS=94.538;HaplotypeScore=0.9937;MLEAC=4;MLEAF=0.500;MQ=34.05;MQ0=0;MQRankSum=-2.143;QD=3.51;ReadPosRankSum=5.079;SB=-1.514e+00 GT:AD:DP:GQ:PL 0/1:44,15:59:99:355,0,1246 0/1:45,6:51:38:38,0,1385 0/1:34,12:46:99:256,0,740 0/1:16,1:17:3:3,0,359 +chr12 95906603 rs3794261 C A 628.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.079;DB;DP=181;Dels=0.00;FS=2.996;HaplotypeScore=0.2497;MLEAC=1;MLEAF=0.125;MQ=35.31;MQ0=0;MQRankSum=-1.604;QD=11.44;ReadPosRankSum=1.433;SB=-3.200e+02 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,153,1961 0/1:32,23:55:99:665,0,914 0/0:47,0:47:99:0,114,1526 0/0:22,0:22:57:0,57,735 +chr12 96370455 . G C 240.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.135;DP=115;Dels=0.02;FS=18.369;HaplotypeScore=4.9294;MLEAC=4;MLEAF=0.500;MQ=31.71;MQ0=0;MQRankSum=-0.701;QD=2.09;ReadPosRankSum=-0.369;SB=-1.219e-02 GT:AD:DP:GQ:PL 0/1:23,4:27:45:45,0,305 0/1:24,4:28:86:86,0,268 0/1:33,3:36:41:41,0,435 0/1:17,5:22:99:111,0,185 +chr12 97338696 rs249585 G A 249.54 . AC=5;AF=0.833;AN=6;BaseQRankSum=2.716;DB;DP=29;Dels=0.00;FS=12.063;HaplotypeScore=1.1856;MLEAC=5;MLEAF=0.833;MQ=22.87;MQ0=0;MQRankSum=2.426;QD=10.40;ReadPosRankSum=-1.412;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,4:4:12:160,12,0 0/1:10,2:13:50:50,0,109 1/1:5,2:7:6:80,6,0 ./. +chr12 97345824 . A G 54.27 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.635;DP=55;Dels=0.04;FS=2.722;HaplotypeScore=15.6648;MLEAC=3;MLEAF=0.500;MQ=24.93;MQ0=0;MQRankSum=-1.428;QD=1.02;ReadPosRankSum=0.992;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,3:16:31:31,0,138 0/1:17,3:20:32:32,0,107 0/1:10,5:15:30:30,0,129 ./. +chr12 98698672 rs1351339 T C 45.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=0;MQRankSum=0.736;QD=15.26;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:77,6,0 ./. ./. ./. +chr12 98927573 . T A,C 37.24 . AC=1,1;AF=0.125,0.125;AN=8;BaseQRankSum=-0.593;DP=81;Dels=0.05;FS=15.239;HaplotypeScore=24.0522;MLEAC=1,1;MLEAF=0.125,0.125;MQ=24.82;MQ0=0;MQRankSum=-1.410;QD=0.74;ReadPosRankSum=0.698;SB=-1.061e+01 GT:AD:DP:GQ:PL 0/1:20,2,0:22:43:43,0,93,52,99,151 0/2:19,2,4:26:63:63,84,303,0,219,207 0/0:18,1,2:22:1:0,1,272,7,255,278 0/0:5,1,0:7:6:0,6,69,6,69,69 +chr12 99640428 rs3751323 T C 3457.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.147;DB;DP=265;Dels=0.00;FS=3.428;HaplotypeScore=1.4807;MLEAC=4;MLEAF=0.500;MQ=34.85;MQ0=0;MQRankSum=-3.994;QD=19.42;ReadPosRankSum=1.888;SB=-1.680e+03 GT:AD:DP:GQ:PL 0/0:87,0:87:99:0,238,3064 1/1:3,59:62:99:2060,107,0 0/1:47,28:75:99:842,0,1534 0/1:21,19:40:99:555,0,592 +chr12 99793457 . A G 102.78 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.860;DP=205;Dels=0.02;FS=68.652;HaplotypeScore=33.4160;MLEAC=4;MLEAF=0.500;MQ=31.00;MQ0=0;MQRankSum=-2.692;QD=0.50;ReadPosRankSum=-1.725;SB=-2.034e-01 GT:AD:DP:GQ:PL 0/1:46,7:53:13:13,0,1145 0/1:44,7:51:71:71,0,969 0/1:58,6:65:38:38,0,1341 0/1:27,4:31:23:23,0,451 +chr12 100175949 . A G 50.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.204;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=8.6184;MLEAC=3;MLEAF=0.375;MQ=26.19;MQ0=0;MQRankSum=-0.639;QD=1.41;ReadPosRankSum=0.680;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:24:0,24,289 0/1:12,2:15:26:26,0,160 0/1:11,2:13:29:29,0,237 0/1:4,2:7:39:39,0,78 +chr12 100552860 . G C 73.76 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.702;DP=26;Dels=0.04;FS=5.656;HaplotypeScore=1.6849;MLEAC=5;MLEAF=0.625;MQ=19.10;MQ0=0;MQRankSum=0.969;QD=2.84;ReadPosRankSum=-2.572;SB=-6.874e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:23,3,0 0/1:5,3:8:26:59,0,26 0/1:9,2:11:14:14,0,123 0/1:3,1:4:20:20,0,30 +chr12 100617525 . T C 37.20 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.306;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.4795;MLEAC=2;MLEAF=0.250;MQ=28.75;MQ0=0;MQRankSum=-1.391;QD=0.83;ReadPosRankSum=1.532;SB=0.769 GT:AD:DP:GQ:PL 0/1:20,2:22:37:37,0,238 0/0:22,1:23:10:0,10,310 0/1:21,2:23:41:41,0,119 0/0:8,0:8:9:0,9,104 +chr12 100646134 rs140688598 CA C 145.38 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.035;DB;DP=75;FS=3.646;HaplotypeScore=12.7301;MLEAC=3;MLEAF=0.375;MQ=28.24;MQ0=0;MQRankSum=-0.866;QD=2.74;RPA=9,8;RU=A;ReadPosRankSum=1.373;SB=-6.652e+01;STR GT:AD:DP:GQ:PL 0/0:21,1:16:29:0,29,282 0/1:24,7:24:99:161,0,108 0/1:14,3:13:10:10,0,115 0/1:1,2:2:25:26,0,25 +chr12 101510696 rs349662 G A 579.85 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.366;DB;DP=30;Dels=0.03;FS=11.187;HaplotypeScore=0.9944;MLEAC=6;MLEAF=0.750;MQ=30.07;MQ0=0;MQRankSum=3.176;QD=19.33;ReadPosRankSum=-0.508;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,6:6:18:233,18,0 1/1:6,1:7:3:42,3,0 0/1:4,6:10:2:197,0,2 0/1:2,4:6:13:149,0,13 +chr12 101603617 . G T 52.25 . AC=3;AF=0.750;AN=4;BaseQRankSum=-0.727;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.9828;MLEAC=3;MLEAF=0.750;MQ=26.75;MQ0=0;MQRankSum=0.727;QD=5.81;ReadPosRankSum=0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:3,1:4:3:33,3,0 0/1:3,2:5:31:54,0,31 ./. +chr12 101689322 . A T 201.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.341;DP=65;Dels=0.02;FS=39.377;HaplotypeScore=6.4775;MLEAC=4;MLEAF=0.500;MQ=32.16;MQ0=0;MQRankSum=-1.590;QD=3.10;ReadPosRankSum=1.415;SB=-2.172e+00 GT:AD:DP:GQ:PL 0/1:12,1:13:1:1,0,278 0/1:21,4:25:58:58,0,384 0/1:11,2:13:31:31,0,177 0/1:7,6:13:68:152,0,68 +chr12 101732628 rs142261987 T A 30.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.764;DB;DP=178;Dels=0.00;FS=82.498;HaplotypeScore=1.4866;MLEAC=2;MLEAF=0.250;MQ=36.77;MQ0=0;MQRankSum=-1.185;QD=0.27;ReadPosRankSum=0.410;SB=-2.867e+00 GT:AD:DP:GQ:PL 0/0:44,0:45:99:0,117,1501 0/1:56,6:62:37:37,0,1455 0/1:47,5:52:34:34,0,1260 0/0:18,1:19:3:0,3,458 +chr12 102091849 . G C 73.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.400;DP=21;Dels=0.05;FS=2.963;HaplotypeScore=1.7758;MLEAC=4;MLEAF=0.500;MQ=23.55;MQ0=0;MQRankSum=0.267;QD=9.23;ReadPosRankSum=2.267;SB=0.623 GT:AD:DP:GQ:PL 1/1:1,3:4:9:94,9,0 1/1:2,1:3:3:26,3,0 0/0:7,0:7:6:0,6,58 0/0:5,1:6:9:0,9,106 +chr12 102133051 . G A 31.66 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.009;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=10.7115;MLEAC=2;MLEAF=0.333;MQ=22.99;MQ0=0;MQRankSum=0.796;QD=1.44;ReadPosRankSum=-0.265;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,2:14:51:51,0,112 ./. 0/0:5,0:5:12:0,12,117 0/1:5,2:7:19:19,0,84 +chr12 102183918 . A G 127.62 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.468;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=8.9493;MLEAC=4;MLEAF=0.500;MQ=21.98;MQ0=0;MQRankSum=-0.992;QD=2.45;ReadPosRankSum=1.852;SB=22.71 GT:AD:DP:GQ:PL 0/1:8,4:12:35:35,0,63 0/1:16,3:19:42:42,0,149 0/1:11,3:14:36:36,0,160 1/1:3,2:7:6:58,6,0 +chr12 102357749 . G A 86.07 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.350;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.1128;MLEAC=3;MLEAF=0.375;MQ=24.17;MQ0=0;MQRankSum=1.113;QD=4.53;ReadPosRankSum=-0.795;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:54:55,0,54 0/1:7,1:8:15:15,0,78 0/1:4,2:6:59:59,0,70 0/0:8,1:9:18:0,18,162 +chr12 102357893 rs4764685 G T 566.64 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.699;DB;DP=31;Dels=0.00;FS=8.189;HaplotypeScore=0.1835;MLEAC=5;MLEAF=0.625;MQ=33.95;MQ0=0;MQRankSum=0.783;QD=18.28;ReadPosRankSum=2.350;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,7:8:21:259,21,0 0/1:6,2:8:64:64,0,114 0/1:3,7:10:89:228,0,89 0/1:3,2:5:61:61,0,96 +chr12 102494829 . T C 72.81 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.408;DP=19;Dels=0.00;FS=3.424;HaplotypeScore=1.3087;MLEAC=5;MLEAF=0.625;MQ=29.17;MQ0=0;MQRankSum=0.387;QD=3.83;ReadPosRankSum=0.387;SB=0.605 GT:AD:DP:GQ:PL 0/1:6,2:8:19:53,0,19 0/1:5,1:6:13:13,0,83 0/1:3,1:4:20:20,0,23 1/1:0,1:1:3:29,3,0 +chr12 102589722 . AT A 109.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.355;DP=40;FS=11.553;HaplotypeScore=19.9329;MLEAC=3;MLEAF=0.375;MQ=23.76;MQ0=0;MQRankSum=-2.083;QD=3.12;ReadPosRankSum=1.449;SB=0.770 GT:AD:DP:GQ:PL 0/0:5,0:3:6:0,6,64 0/1:6,8:11:99:125,0,158 0/1:11,1:6:15:15,0,165 0/1:5,1:3:12:20,0,12 +chr12 103237468 rs772897 G C 5726.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.047;DB;DP=192;Dels=0.00;FS=0.757;HaplotypeScore=2.1338;MLEAC=7;MLEAF=0.875;MQ=37.73;MQ0=0;MQRankSum=-1.757;QD=29.82;ReadPosRankSum=0.088;SB=-1.880e+03 GT:AD:DP:GQ:PL 1/1:1,38:39:77:1408,77,0 0/1:29,29:58:99:984,0,948 1/1:4,51:55:99:1939,125,0 1/1:3,37:40:88:1395,88,0 +chr12 103310942 . T A 96.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.674;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9856;MLEAC=3;MLEAF=0.375;MQ=34.73;MQ0=0;MQRankSum=-1.553;QD=1.25;ReadPosRankSum=-0.038;SB=-7.715e-01 GT:AD:DP:GQ:PL 0/0:21,1:22:36:0,36,450 0/1:18,4:23:89:89,0,267 0/1:25,2:27:5:5,0,563 0/1:24,3:27:44:44,0,501 +chr12 104069649 . C CA 569.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.349;DP=84;FS=0.000;HaplotypeScore=7.6431;MLEAC=3;MLEAF=0.375;MQ=40.41;MQ0=0;MQRankSum=-1.709;QD=9.66;ReadPosRankSum=0.347;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/0:25,0:24:72:0,72,1072 0/1:15,5:17:99:179,0,430 0/1:12,8:18:99:309,0,400 0/1:15,4:17:99:134,0,492 +chr12 104152045 . A C 35.12 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.894;DP=131;Dels=0.00;FS=13.530;HaplotypeScore=3.2293;MLEAC=2;MLEAF=0.250;MQ=28.71;MQ0=0;MQRankSum=0.722;QD=0.51;ReadPosRankSum=-1.886;SB=0.948 GT:AD:DP:GQ:PL 0/0:33,1:34:29:0,29,696 0/1:31,4:35:62:62,0,603 0/1:32,2:34:14:14,0,542 0/0:28,0:28:39:0,39,455 +chr12 104208868 rs10861107 C T 594.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.672;DB;DP=130;Dels=0.00;FS=3.334;HaplotypeScore=1.4101;MLEAC=1;MLEAF=0.125;MQ=37.38;MQ0=0;MQRankSum=-2.294;QD=14.17;ReadPosRankSum=0.246;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:22,20:42:99:631,0,730 0/0:39,0:39:99:0,111,1385 0/0:31,0:31:84:0,84,1122 0/0:18,0:18:54:0,54,697 +chr12 104260267 . T C 89.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.078;DP=133;Dels=0.00;FS=26.484;HaplotypeScore=2.8360;MLEAC=3;MLEAF=0.375;MQ=35.02;MQ0=0;MQRankSum=-3.902;QD=0.85;ReadPosRankSum=0.194;SB=-4.153e+00 GT:AD:DP:GQ:PL 0/1:37,4:41:5:5,0,1131 0/0:25,2:27:12:0,12,629 0/1:31,3:34:3:3,0,859 0/1:25,6:31:99:120,0,573 +chr12 104309177 . G A 54.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.092;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=8.8458;MLEAC=3;MLEAF=0.375;MQ=30.43;MQ0=0;MQRankSum=-2.496;QD=0.45;ReadPosRankSum=2.346;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,4:34:68:68,0,348 0/1:43,1:44:1:1,0,330 0/1:39,3:43:25:25,0,336 0/0:23,0:23:21:0,21,210 +chr12 104327773 . G T 83.27 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.810;DP=162;Dels=0.00;FS=18.713;HaplotypeScore=3.8035;MLEAC=2;MLEAF=0.250;MQ=21.81;MQ0=0;MQRankSum=3.035;QD=0.85;ReadPosRankSum=-2.390;SB=1.94 GT:AD:DP:GQ:PL 0/0:38,1:39:9:0,9,368 0/1:51,4:55:81:81,0,301 0/1:41,2:43:43:43,0,255 0/0:25,0:25:9:0,9,77 +chr12 104341103 rs7645 C T 569.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.996;DB;DP=84;Dels=0.01;FS=2.218;HaplotypeScore=1.3508;MLEAC=4;MLEAF=0.500;MQ=29.18;MQ0=0;MQRankSum=-1.431;QD=6.78;ReadPosRankSum=2.312;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:21,9:30:99:191,0,670 0/1:16,4:20:93:93,0,317 0/1:16,9:25:99:208,0,362 0/1:4,4:8:20:120,0,20 +chr12 104866607 . C A 53.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.537;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=4;MLEAF=1.00;MQ=16.85;MQ0=0;MQRankSum=1.537;QD=8.87;ReadPosRankSum=0.406;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:36,3,0 ./. 1/1:3,2:5:6:51,6,0 ./. +chr12 105424258 . C A 40.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.366;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.6587;MLEAC=1;MLEAF=0.125;MQ=34.53;MQ0=0;MQRankSum=-2.474;QD=1.38;ReadPosRankSum=1.976;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:48:0,48,556 0/1:24,5:29:76:76,0,447 0/0:19,0:19:24:0,24,313 0/0:9,0:9:12:0,12,144 +chr12 105428097 . T G 174.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.330;DP=77;Dels=0.00;FS=7.713;HaplotypeScore=0.6435;MLEAC=4;MLEAF=0.500;MQ=36.78;MQ0=0;MQRankSum=-0.304;QD=2.27;ReadPosRankSum=-1.598;SB=-2.612e-02 GT:AD:DP:GQ:PL 0/1:13,3:16:64:64,0,199 0/1:22,3:25:51:51,0,327 0/1:19,2:21:21:21,0,220 0/1:12,3:15:81:81,0,145 +chr12 105443689 . A C 217.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.348;DP=145;Dels=0.01;FS=1.089;HaplotypeScore=2.9553;MLEAC=3;MLEAF=0.375;MQ=34.83;MQ0=0;MQRankSum=-3.410;QD=2.25;ReadPosRankSum=1.955;SB=-2.614e+01 GT:AD:DP:GQ:PL 0/1:26,7:33:99:109,0,621 0/0:44,4:48:6:0,6,972 0/1:35,5:40:67:67,0,626 0/1:19,4:23:84:84,0,282 +chr12 105445798 rs61938827 C A 49.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.000;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.3222;MLEAC=6;MLEAF=1.00;MQ=16.95;MQ0=0;MQRankSum=0.922;QD=6.16;ReadPosRankSum=-0.421;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:3:26,3,0 1/1:3,1:4:3:27,3,0 1/1:1,1:2:3:31,3,0 ./. +chr12 105569955 . T A 108.44 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.152;DP=42;Dels=0.00;FS=14.588;HaplotypeScore=3.8124;MLEAC=3;MLEAF=0.500;MQ=21.45;MQ0=0;MQRankSum=1.110;QD=2.64;ReadPosRankSum=1.850;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:12:99:105,0,152 0/1:19,3:22:28:28,0,35 0/1:5,2:7:14:14,0,63 ./. +chr12 106460763 rs149780357 G T 79.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.717;DB;DP=64;Dels=0.00;FS=69.886;HaplotypeScore=5.2202;MLEAC=3;MLEAF=0.375;MQ=27.43;MQ0=0;MQRankSum=-1.146;QD=1.62;ReadPosRankSum=2.062;SB=-2.503e-01 GT:AD:DP:GQ:PL 0/1:17,2:19:19:19,0,380 0/1:11,2:13:9:9,0,231 0/0:13,2:15:7:0,7,345 0/1:13,4:17:93:93,0,204 +chr12 106480450 rs2251027 A G 1073.87 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.234;DB;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9680;MLEAC=6;MLEAF=0.750;MQ=34.37;MQ0=0;MQRankSum=-0.186;QD=22.37;ReadPosRankSum=-0.321;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,12:17:52:402,0,52 0/1:5,5:11:99:157,0,157 1/1:3,9:12:27:345,27,0 1/1:2,6:8:18:216,18,0 +chr12 107075809 . A T 671.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.288;DP=174;Dels=0.01;FS=168.460;HaplotypeScore=18.9891;MLEAC=4;MLEAF=0.500;MQ=30.25;MQ0=0;MQRankSum=-1.260;QD=3.86;ReadPosRankSum=2.184;SB=5.395e-03 GT:AD:DP:GQ:PL 0/1:29,12:42:99:295,0,542 0/1:32,7:39:99:134,0,586 0/1:40,12:52:99:159,0,847 0/1:33,7:40:99:126,0,607 +chr12 108008772 rs10492158 C T 290.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.301;DB;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.3486;MLEAC=3;MLEAF=0.375;MQ=36.25;MQ0=0;MQRankSum=-0.601;QD=5.93;ReadPosRankSum=0.564;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:42:0,42,569 0/1:11,5:16:99:147,0,316 0/1:14,4:18:99:107,0,421 0/1:12,3:15:80:80,0,290 +chr12 108029186 rs73187339 C A 1435.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=5.215;DB;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.4849;MLEAC=3;MLEAF=0.375;MQ=35.43;MQ0=0;MQRankSum=0.996;QD=16.70;ReadPosRankSum=0.848;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:33,0:33:84:0,84,1000 0/1:12,21:33:99:681,0,154 0/1:13,19:32:99:635,0,272 0/1:15,6:21:99:163,0,444 +chr12 108042960 rs17039588 C G 2529.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.548;DB;DP=97;Dels=0.00;FS=9.969;HaplotypeScore=2.7318;MLEAC=7;MLEAF=0.875;MQ=32.66;MQ0=0;MQRankSum=-0.409;QD=26.08;ReadPosRankSum=-1.236;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:78:955,78,0 0/1:14,6:20:99:176,0,424 1/1:4,28:32:81:989,81,0 1/1:6,12:18:36:454,36,0 +chr12 108086895 . A C 83.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.505;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1269;MLEAC=3;MLEAF=0.375;MQ=33.44;MQ0=0;MQRankSum=-2.845;QD=1.91;ReadPosRankSum=-1.939;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,1:16:8:8,0,214 0/1:17,5:22:99:109,0,333 0/0:14,1:15:24:0,24,257 0/1:5,1:6:8:8,0,86 +chr12 108133112 . A G 117.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.833;DP=84;Dels=0.01;FS=87.962;HaplotypeScore=21.0152;MLEAC=2;MLEAF=0.250;MQ=26.77;MQ0=0;MQRankSum=-1.468;QD=2.61;ReadPosRankSum=1.329;SB=4.60 GT:AD:DP:GQ:PL 0/0:15,2:18:5:0,5,275 0/1:19,3:22:31:31,0,219 0/0:16,1:20:11:0,11,403 0/1:17,5:23:99:127,0,201 +chr12 109017061 . C A 54.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.343;DP=67;Dels=0.00;FS=45.771;HaplotypeScore=4.5360;MLEAC=2;MLEAF=0.250;MQ=33.44;MQ0=0;MQRankSum=-1.643;QD=1.64;ReadPosRankSum=0.034;SB=-4.502e+00 GT:AD:DP:GQ:PL 0/0:20,1:21:24:0,24,660 0/0:12,1:13:2:0,2,340 0/1:13,3:16:39:39,0,270 0/1:14,3:17:55:55,0,291 +chr12 109185808 . A G 38.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.884;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4535;MLEAC=1;MLEAF=0.125;MQ=35.79;MQ0=0;MQRankSum=-1.499;QD=1.73;ReadPosRankSum=0.093;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:36:0,36,498 0/0:22,1:24:26:0,26,607 0/1:18,4:22:74:74,0,349 0/0:17,1:18:20:0,20,495 +chr12 109221013 rs10861970 C A 829.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.861;DB;DP=179;Dels=0.01;FS=2.408;HaplotypeScore=2.6187;MLEAC=3;MLEAF=0.375;MQ=38.19;MQ0=0;MQRankSum=-3.170;QD=6.64;ReadPosRankSum=2.129;SB=-9.201e+01 GT:AD:DP:GQ:PL 0/1:30,15:45:99:441,0,997 0/0:54,0:54:99:0,156,2013 0/1:27,11:38:99:318,0,815 0/1:34,6:40:99:114,0,1137 +chr12 109286715 . G A 162.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.503;DP=70;Dels=0.00;FS=13.151;HaplotypeScore=3.2017;MLEAC=3;MLEAF=0.375;MQ=31.79;MQ0=0;MQRankSum=-0.835;QD=2.90;ReadPosRankSum=0.768;SB=0.627 GT:AD:DP:GQ:PL 0/0:13,1:14:5:0,5,346 0/1:16,2:18:39:39,0,257 0/1:16,4:20:93:93,0,318 0/1:15,3:18:72:72,0,184 +chr12 109690790 . G C 33.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.738;DP=211;Dels=0.00;FS=2.796;HaplotypeScore=13.0842;MLEAC=1;MLEAF=0.125;MQ=31.23;MQ0=0;MQRankSum=-4.395;QD=0.75;ReadPosRankSum=2.997;SB=0.571 GT:AD:DP:GQ:PL 0/0:48,2:50:80:0,80,1143 0/0:48,3:51:26:0,26,992 0/0:61,4:66:21:0,21,1105 0/1:37,7:44:69:69,0,643 +chr12 109703333 . G T 73.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.121;DP=55;Dels=0.02;FS=5.020;HaplotypeScore=1.5571;MLEAC=3;MLEAF=0.375;MQ=25.99;MQ0=0;MQRankSum=0.537;QD=1.78;ReadPosRankSum=-0.502;SB=-2.356e+00 GT:AD:DP:GQ:PL 0/1:17,1:18:2:2,0,160 0/0:13,1:14:1:0,1,213 0/1:9,3:12:66:66,0,159 0/1:8,2:10:43:43,0,68 +chr12 109895897 . A T 373.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.504;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.7094;MLEAC=4;MLEAF=0.500;MQ=30.80;MQ0=0;MQRankSum=-1.481;QD=4.45;ReadPosRankSum=2.748;SB=-1.409e-02 GT:AD:DP:GQ:PL 0/1:16,6:22:99:129,0,206 0/1:19,8:27:99:187,0,195 0/1:25,2:27:29:29,0,208 0/1:5,3:8:43:71,0,43 +chr12 109945320 . C A 35.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.418;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.1490;MLEAC=2;MLEAF=0.250;MQ=22.08;MQ0=0;MQRankSum=0.040;QD=0.89;ReadPosRankSum=1.066;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:24:0,24,232 0/1:23,3:26:65:65,0,117 0/0:24,2:26:24:0,24,249 0/1:13,1:14:11:11,0,73 +chr12 109949134 rs3742018 C T 411.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.942;DB;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=2.4184;MLEAC=3;MLEAF=0.375;MQ=36.07;MQ0=0;MQRankSum=-2.387;QD=5.72;ReadPosRankSum=1.698;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,6:23:99:174,0,401 0/0:26,0:26:63:0,63,854 0/1:18,7:25:99:188,0,597 0/1:19,4:23:93:93,0,386 +chr12 109955708 rs10850308 A C 79.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.493;DB;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.5308;MLEAC=3;MLEAF=0.375;MQ=31.55;MQ0=0;MQRankSum=0.403;QD=5.28;ReadPosRankSum=0.313;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:12:0,12,156 0/1:3,1:4:22:29,0,22 0/1:5,2:8:63:63,0,122 0/1:2,1:3:30:30,0,59 +chr12 110222121 . C G 54.57 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.264;DP=160;Dels=0.00;FS=63.393;HaplotypeScore=13.9727;MLEAC=1;MLEAF=0.125;MQ=29.51;MQ0=0;MQRankSum=-0.722;QD=1.14;ReadPosRankSum=-1.557;SB=-7.474e+00 GT:AD:DP:GQ:PL 0/0:39,2:41:43:0,43,1019 0/0:35,3:38:3:0,3,757 0/0:33,0:33:78:0,78,879 0/1:42,6:48:90:90,0,818 +chr12 110778605 . T G 50.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.978;DP=170;Dels=0.00;FS=10.125;HaplotypeScore=0.9258;MLEAC=1;MLEAF=0.125;MQ=33.22;MQ0=0;MQRankSum=-0.787;QD=1.42;ReadPosRankSum=0.005;SB=-1.149e-02 GT:AD:DP:GQ:PL 0/0:39,1:40:61:0,61,802 0/0:44,0:44:93:0,93,973 0/0:50,0:50:90:0,90,995 0/1:30,6:36:87:87,0,581 +chr12 110825608 . C G 70.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.707;DP=160;Dels=0.01;FS=45.408;HaplotypeScore=25.9454;MLEAC=4;MLEAF=0.500;MQ=28.73;MQ0=0;MQRankSum=-2.864;QD=0.44;ReadPosRankSum=2.658;SB=-1.090e+00 GT:AD:DP:GQ:PL 0/1:35,6:41:56:56,0,813 0/1:38,6:45:6:6,0,699 0/1:40,5:45:38:38,0,857 0/1:24,3:27:12:12,0,381 +chr12 110929797 . G A 34.93 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.648;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=8.5650;MLEAC=2;MLEAF=0.333;MQ=18.30;MQ0=0;MQRankSum=-0.412;QD=3.49;ReadPosRankSum=1.002;SB=0.729 GT:AD:DP:GQ:PL 0/0:7,1:8:3:0,3,34 1/1:5,4:9:9:74,9,0 0/0:16,1:17:6:0,6,66 ./. +chr12 111317817 . C A 119.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.478;DP=317;Dels=0.02;FS=23.422;HaplotypeScore=28.5366;MLEAC=4;MLEAF=0.500;MQ=33.53;MQ0=0;MQRankSum=1.391;QD=0.38;ReadPosRankSum=-1.717;SB=-5.522e-02 GT:AD:DP:GQ:PL 0/1:65,8:74:70:70,0,1541 0/1:70,6:76:45:45,0,1559 0/1:86,7:93:27:27,0,1905 0/1:63,4:67:20:20,0,1225 +chr12 111375044 rs116796218 T A 232.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.168;DB;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.9698;MLEAC=3;MLEAF=0.375;MQ=34.77;MQ0=0;MQRankSum=-2.591;QD=2.62;ReadPosRankSum=-1.223;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/0:33,0:33:84:0,84,1119 0/1:29,5:35:99:118,0,595 0/1:28,4:32:84:84,0,537 0/1:18,3:22:74:74,0,248 +chr12 111537622 . T A 49.98 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=17.32;MQ0=0;MQRankSum=0.727;QD=8.33;ReadPosRankSum=0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:3,3:6:9:82,9,0 ./. +chr12 111750047 . C A 86.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.702;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=0.7149;MLEAC=3;MLEAF=0.375;MQ=21.61;MQ0=0;MQRankSum=0.890;QD=3.74;ReadPosRankSum=1.452;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:15:76,0,15 0/0:8,1:9:6:0,6,48 0/1:6,1:8:21:26,0,21 0/1:5,1:6:26:26,0,26 +chr12 111885264 . T C 161.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.339;DP=155;Dels=0.01;FS=13.975;HaplotypeScore=5.5323;MLEAC=3;MLEAF=0.375;MQ=33.17;MQ0=0;MQRankSum=0.916;QD=1.37;ReadPosRankSum=0.790;SB=-1.391e-02 GT:AD:DP:GQ:PL 0/1:35,7:42:99:106,0,781 0/0:36,1:37:45:0,45,643 0/1:38,4:42:33:33,0,601 0/1:29,4:33:66:66,0,511 +chr12 112647839 . G C 113.09 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.743;DP=139;Dels=0.00;FS=7.640;HaplotypeScore=10.0369;MLEAC=4;MLEAF=0.500;MQ=27.18;MQ0=0;MQRankSum=-0.702;QD=0.81;ReadPosRankSum=-1.113;SB=-3.988e+01 GT:AD:DP:GQ:PL 0/1:27,4:31:82:82,0,455 0/1:32,3:36:12:12,0,500 0/1:37,5:42:56:56,0,567 0/1:27,3:30:4:4,0,482 +chr12 112669523 . G A 71.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.392;DP=90;Dels=0.00;FS=9.625;HaplotypeScore=1.7353;MLEAC=3;MLEAF=0.375;MQ=28.64;MQ0=0;MQRankSum=-1.791;QD=1.10;ReadPosRankSum=-1.187;SB=-4.572e-01 GT:AD:DP:GQ:PL 0/1:21,2:23:11:11,0,452 0/0:23,2:25:11:0,11,339 0/1:22,3:25:5:5,0,445 0/1:12,5:17:96:96,0,314 +chr12 112920090 . T A 163.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.738;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6757;MLEAC=3;MLEAF=0.375;MQ=34.53;MQ0=0;MQRankSum=-3.341;QD=3.33;ReadPosRankSum=1.694;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:99:137,0,179 0/1:10,4:14:51:51,0,308 0/1:17,2:19:18:18,0,365 0/0:7,1:8:15:0,15,162 +chr12 113285532 . G C 75.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.624;DP=123;Dels=0.00;FS=26.992;HaplotypeScore=9.7175;MLEAC=2;MLEAF=0.250;MQ=27.18;MQ0=0;MQRankSum=-1.196;QD=1.52;ReadPosRankSum=0.113;SB=-3.898e-01 GT:AD:DP:GQ:PL 0/1:12,5:17:99:99,0,193 0/0:29,2:31:16:0,16,376 0/0:39,2:42:84:0,84,932 0/1:31,2:33:18:18,0,443 +chr12 113400548 . A T 375.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.451;DP=333;Dels=0.01;FS=180.577;HaplotypeScore=18.5630;MLEAC=3;MLEAF=0.375;MQ=31.09;MQ0=0;MQRankSum=-4.791;QD=1.50;ReadPosRankSum=1.629;SB=0.780 GT:AD:DP:GQ:PL 0/0:74,7:81:42:0,42,1871 0/1:68,11:79:99:130,0,1404 0/1:76,15:91:99:202,0,1726 0/1:68,10:79:87:87,0,1484 +chr12 113435293 rs1293756 C A 3291.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.064;DB;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7317;MLEAC=7;MLEAF=0.875;MQ=40.78;MQ0=0;MQRankSum=-1.293;QD=30.19;ReadPosRankSum=1.065;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,11:31:99:381,0,747 1/1:0,23:23:66:902,66,0 1/1:3,29:32:24:1136,24,0 1/1:2,21:23:63:872,63,0 +chr12 113444255 . T C 36.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.365;DP=133;Dels=0.01;FS=16.770;HaplotypeScore=27.4000;MLEAC=3;MLEAF=0.375;MQ=27.63;MQ0=0;MQRankSum=-3.873;QD=0.38;ReadPosRankSum=1.922;SB=2.72 GT:AD:DP:GQ:PL 0/1:26,4:30:30:30,0,484 0/1:21,5:27:23:23,0,441 0/1:32,8:40:27:27,0,792 0/0:31,3:35:16:0,16,371 +chr12 113552524 . A G 90.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.202;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=5.1893;MLEAC=3;MLEAF=0.375;MQ=34.48;MQ0=0;MQRankSum=-4.000;QD=0.52;ReadPosRankSum=0.195;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:52,6:59:48:48,0,1248 0/0:56,2:58:42:0,42,1079 0/1:62,5:68:13:13,0,1223 0/1:41,5:46:72:72,0,874 +chr12 113593157 . A T 45.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.490;DP=81;Dels=0.02;FS=4.842;HaplotypeScore=2.9202;MLEAC=3;MLEAF=0.375;MQ=28.90;MQ0=0;MQRankSum=0.267;QD=0.79;ReadPosRankSum=-1.179;SB=1.55 GT:AD:DP:GQ:PL 0/1:17,2:19:16:16,0,256 0/1:15,2:17:47:47,0,201 0/0:22,1:23:7:0,7,376 0/1:18,2:20:25:25,0,367 +chr12 113664805 . T G 143.18 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.718;DP=34;Dels=0.00;FS=3.680;HaplotypeScore=1.5492;MLEAC=6;MLEAF=1.00;MQ=20.25;MQ0=0;MQRankSum=2.662;QD=4.94;ReadPosRankSum=0.718;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,3:8:3:39,3,0 1/1:8,3:11:3:30,3,0 1/1:4,6:10:12:110,12,0 ./. +chr12 113744465 . T A 49.40 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.000;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.7703;MLEAC=2;MLEAF=0.500;MQ=20.91;MQ0=0;MQRankSum=1.047;QD=2.25;ReadPosRankSum=-2.357;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,1:11:7:7,0,149 0/1:7,4:11:19:76,0,19 ./. ./. +chr12 113822925 . A C 64.42 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.690;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9893;MLEAC=4;MLEAF=0.667;MQ=21.56;MQ0=0;MQRankSum=2.177;QD=2.08;ReadPosRankSum=0.478;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,1:9:3:31,3,0 ./. 0/1:8,1:10:22:22,0,60 0/1:10,2:12:14:50,0,14 +chr12 113834981 . G C 67.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.125;DP=37;Dels=0.00;FS=8.394;HaplotypeScore=3.2047;MLEAC=3;MLEAF=0.375;MQ=25.50;MQ0=0;MQRankSum=1.525;QD=2.59;ReadPosRankSum=-0.525;SB=0.686 GT:AD:DP:GQ:PL 0/1:4,3:7:69:69,0,75 0/1:9,1:10:16:16,0,156 0/1:7,1:9:25:25,0,98 0/0:10,1:11:12:0,12,110 +chr12 113835226 . T G 31.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.857;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=0.4895;MLEAC=2;MLEAF=0.250;MQ=29.64;MQ0=0;MQRankSum=-0.897;QD=1.02;ReadPosRankSum=-0.618;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:33:33,0,235 0/0:10,0:10:27:0,27,306 0/0:15,0:15:24:0,24,269 0/1:13,2:15:40:40,0,152 +chr12 114793665 . C T 223.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.220;DP=55;Dels=0.00;FS=23.797;HaplotypeScore=3.9902;MLEAC=4;MLEAF=0.500;MQ=29.08;MQ0=0;MQRankSum=-0.781;QD=4.07;ReadPosRankSum=1.927;SB=-1.103e-01 GT:AD:DP:GQ:PL 0/1:8,4:12:89:89,0,166 0/1:11,4:15:83:83,0,156 0/1:12,4:16:79:79,0,231 0/1:11,1:12:15:15,0,128 +chr12 116408388 . C G 55.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.501;DP=139;Dels=0.00;FS=13.440;HaplotypeScore=12.4322;MLEAC=2;MLEAF=0.250;MQ=33.21;MQ0=0;MQRankSum=-3.467;QD=0.93;ReadPosRankSum=-0.847;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:27,4:31:42:42,0,757 0/0:38,1:39:75:0,75,880 0/0:39,1:40:55:0,55,833 0/1:23,5:29:55:55,0,472 +chr12 117479785 . C G 63.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.240;DP=17;Dels=0.00;FS=15.911;HaplotypeScore=1.9120;MLEAC=4;MLEAF=0.500;MQ=23.53;MQ0=0;MQRankSum=1.110;QD=4.91;ReadPosRankSum=-1.371;SB=0.213 GT:AD:DP:GQ:PL 0/0:4,0:4:3:0,3,29 1/1:2,2:4:6:57,6,0 0/1:5,1:6:24:24,0,28 0/1:2,1:3:17:26,0,17 +chr12 117992868 . G A 124.06 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.531;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=7.6413;MLEAC=3;MLEAF=0.375;MQ=26.25;MQ0=0;MQRankSum=0.849;QD=3.03;ReadPosRankSum=-0.106;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:15:0,15,164 0/1:6,2:8:33:33,0,61 0/1:15,1:16:18:18,0,119 0/1:12,4:16:99:116,0,105 +chr12 118198899 . C A 215.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.849;DP=84;Dels=0.04;FS=37.557;HaplotypeScore=9.7834;MLEAC=4;MLEAF=0.500;MQ=26.95;MQ0=0;MQRankSum=-2.378;QD=2.57;ReadPosRankSum=1.202;SB=0.020 GT:AD:DP:GQ:PL 0/1:15,4:19:78:78,0,155 0/1:15,3:18:25:25,0,203 0/1:21,4:25:41:41,0,333 0/1:12,7:19:98:114,0,98 +chr12 118199148 . G T 46.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.524;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.9731;MLEAC=4;MLEAF=0.500;MQ=20.32;MQ0=0;MQRankSum=1.746;QD=2.23;ReadPosRankSum=-0.087;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:22:26,0,22 0/1:5,1:6:16:16,0,62 0/1:4,2:6:22:22,0,54 0/1:2,1:3:21:25,0,21 +chr12 118464911 . A T 74.28 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.443;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=9.8978;MLEAC=4;MLEAF=0.500;MQ=24.23;MQ0=0;MQRankSum=-0.526;QD=1.06;ReadPosRankSum=2.464;SB=-3.792e-01 GT:AD:DP:GQ:PL 0/1:9,5:14:86:86,0,121 0/1:20,2:22:16:16,0,251 0/1:18,1:19:7:7,0,96 0/1:14,1:15:6:6,0,162 +chr12 118533679 . T G 412.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.554;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.2458;MLEAC=4;MLEAF=0.500;MQ=32.57;MQ0=0;MQRankSum=1.343;QD=5.36;ReadPosRankSum=3.371;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,5:16:93:142,0,93 0/1:21,6:27:99:153,0,275 0/1:18,5:23:99:126,0,214 0/1:9,2:11:34:34,0,142 +chr12 119594344 . C A 315.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.935;DP=62;Dels=0.00;FS=45.858;HaplotypeScore=8.0578;MLEAC=4;MLEAF=0.500;MQ=30.21;MQ0=0;MQRankSum=-0.935;QD=5.09;ReadPosRankSum=-1.355;SB=-3.102e+00 GT:AD:DP:GQ:PL 0/1:13,3:16:78:78,0,207 0/1:13,3:17:29:29,0,274 0/1:7,3:10:55:55,0,92 0/1:11,8:19:99:196,0,185 +chr12 119938010 rs1727390 A C 124.65 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.514;DB;DP=80;Dels=0.03;FS=5.097;HaplotypeScore=14.1852;MLEAC=4;MLEAF=0.500;MQ=22.74;MQ0=0;MQRankSum=-0.779;QD=2.15;ReadPosRankSum=0.735;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,5:22:0:0,0,194 0/1:16,8:24:16:138,0,16 0/1:14,5:20:20:20,0,272 0/1:11,1:12:5:5,0,164 +chr12 119960612 rs708887 G T 2260.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.600;DB;DP=134;Dels=0.02;FS=3.045;HaplotypeScore=3.6279;MLEAC=5;MLEAF=0.625;MQ=39.66;MQ0=0;MQRankSum=-1.356;QD=16.87;ReadPosRankSum=2.113;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,30:32:90:1206,90,0 0/1:21,9:30:99:281,0,600 0/1:23,15:38:99:533,0,691 0/1:22,9:31:99:286,0,672 +chr12 120397231 rs10735070 T C 158.53 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.203;DB;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.1263;MLEAC=7;MLEAF=0.875;MQ=21.30;MQ0=0;MQRankSum=-0.935;QD=9.91;ReadPosRankSum=1.470;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,1:3:3:0,3,35 1/1:4,2:6:6:74,6,0 1/1:1,4:5:6:65,6,0 1/1:0,5:5:6:63,6,0 +chr12 120606093 . T C 118.13 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.078;DP=130;Dels=0.00;FS=9.424;HaplotypeScore=3.4832;MLEAC=4;MLEAF=0.500;MQ=34.84;MQ0=0;MQRankSum=-1.263;QD=0.91;ReadPosRankSum=-0.175;SB=-4.838e-01 GT:AD:DP:GQ:PL 0/1:34,2:36:8:8,0,636 0/1:28,5:33:88:88,0,516 0/1:38,3:41:31:31,0,692 0/1:18,2:20:33:33,0,209 +chr12 120794653 rs1179441 T C 513.95 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.789;DB;DP=63;Dels=0.05;FS=8.522;HaplotypeScore=6.1971;MLEAC=7;MLEAF=0.875;MQ=25.24;MQ0=0;MQRankSum=0.859;QD=8.16;ReadPosRankSum=1.507;SB=-9.402e+01 GT:AD:DP:GQ:PL 0/1:13,4:17:93:93,0,226 1/1:10,6:16:18:199,18,0 1/1:8,8:17:2:198,2,0 1/1:7,3:10:6:66,6,0 +chr12 121017243 rs509445 A C 793.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=5.684;DB;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=2.1932;MLEAC=1;MLEAF=0.125;MQ=36.38;MQ0=0;MQRankSum=3.302;QD=13.23;ReadPosRankSum=0.147;SB=-3.260e+02 GT:AD:DP:GQ:PL 0/1:36,24:60:99:830,0,1059 0/0:57,0:57:99:0,144,1787 0/0:62,0:62:99:0,177,2215 0/0:40,0:40:99:0,102,1229 +chr12 121138350 rs560736 G T 282.77 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.751;DB;DP=12;Dels=0.00;FS=9.542;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=33.93;MQ0=0;MQRankSum=0.751;QD=23.56;ReadPosRankSum=-0.751;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:24,3,0 1/1:0,4:4:12:169,12,0 1/1:1,1:2:3:42,3,0 1/1:3,2:5:6:85,6,0 +chr12 121201144 . A T 64.51 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.033;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=2.9334;MLEAC=2;MLEAF=0.250;MQ=25.08;MQ0=0;MQRankSum=0.821;QD=2.93;ReadPosRankSum=-1.412;SB=-5.400e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:22:22,0,97 0/1:12,3:15:83:83,0,107 0/0:8,0:8:12:0,12,127 0/0:9,0:9:6:0,6,71 +chr12 121454257 rs2258227 T A 3579.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=5.879;DB;DP=145;Dels=0.00;FS=8.265;HaplotypeScore=11.4823;MLEAC=6;MLEAF=0.750;MQ=33.92;MQ0=0;MQRankSum=1.818;QD=24.68;ReadPosRankSum=3.347;SB=-8.972e+02 GT:AD:DP:GQ:PL 0/1:9,24:33:4:791,0,4 1/1:8,27:35:81:999,81,0 0/1:11,29:40:66:987,0,66 1/1:13,24:37:25:802,25,0 +chr12 121458464 . A G 88.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.551;DP=109;Dels=0.04;FS=81.313;HaplotypeScore=38.4026;MLEAC=3;MLEAF=0.375;MQ=23.57;MQ0=0;MQRankSum=-1.659;QD=1.15;ReadPosRankSum=2.689;SB=-3.723e+00 GT:AD:DP:GQ:PL 0/1:21,7:28:99:105,0,108 0/0:28,3:31:5:0,5,344 0/1:17,2:19:12:12,0,325 0/1:21,4:27:13:13,0,302 +chr12 121603129 . C A 236.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.025;DP=86;Dels=0.05;FS=10.014;HaplotypeScore=14.6636;MLEAC=4;MLEAF=0.500;MQ=28.10;MQ0=0;MQRankSum=-0.901;QD=3.63;ReadPosRankSum=0.818;SB=0.538 GT:AD:DP:GQ:PL 0/1:15,4:19:83:83,0,182 0/1:19,4:23:88:88,0,263 0/0:19,1:20:2:0,2,298 0/1:15,5:20:99:106,0,139 +chr12 122079156 . C G 60.71 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.608;DP=70;Dels=0.00;FS=50.336;HaplotypeScore=5.0285;MLEAC=4;MLEAF=0.500;MQ=26.53;MQ0=0;MQRankSum=-1.875;QD=1.19;ReadPosRankSum=1.020;SB=-3.342e+00 GT:AD:DP:GQ:PL 0/1:16,2:18:26:26,0,218 0/0:16,3:19:1:0,1,303 0/1:14,3:17:43:43,0,274 0/1:13,3:16:32:32,0,180 +chr12 122079441 rs3825175 T C 561.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.004;DB;DP=132;Dels=0.00;FS=14.247;HaplotypeScore=0.8321;MLEAC=2;MLEAF=0.250;MQ=38.25;MQ0=0;MQRankSum=-1.126;QD=10.60;ReadPosRankSum=3.311;SB=-2.020e+02 GT:AD:DP:GQ:PL 0/1:16,9:25:99:270,0,458 0/1:18,10:28:99:333,0,509 0/0:48,0:48:99:0,135,1799 0/0:31,0:31:78:0,78,1009 +chr12 122213469 . G A 133.07 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.299;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=3.6379;MLEAC=3;MLEAF=0.375;MQ=28.70;MQ0=0;MQRankSum=-3.732;QD=1.99;ReadPosRankSum=4.928;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:43:43,0,296 0/0:20,4:24:13:0,13,340 0/1:18,7:25:99:109,0,285 0/1:16,4:20:24:24,0,217 +chr12 122612325 rs7488393 G A 1362.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.850;DB;DP=80;Dels=0.01;FS=4.505;HaplotypeScore=1.9342;MLEAC=5;MLEAF=0.625;MQ=27.10;MQ0=0;MQRankSum=2.147;QD=17.03;ReadPosRankSum=1.819;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:81:885,81,0 0/1:8,8:16:99:200,0,125 0/1:11,6:17:99:112,0,232 0/1:9,10:19:99:211,0,209 +chr12 122615302 . G A 62.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.519;DP=118;Dels=0.00;FS=6.446;HaplotypeScore=0.4931;MLEAC=3;MLEAF=0.375;MQ=34.30;MQ0=0;MQRankSum=-1.448;QD=0.68;ReadPosRankSum=0.387;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,4:35:45:45,0,670 0/0:25,0:25:57:0,57,609 0/1:28,3:31:43:43,0,605 0/1:22,5:27:18:18,0,503 +chr12 122724542 . C G 157.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.026;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4823;MLEAC=3;MLEAF=0.375;MQ=29.03;MQ0=0;MQRankSum=2.904;QD=2.72;ReadPosRankSum=1.478;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:18:18,0,123 0/1:21,3:24:73:73,0,166 0/1:15,4:19:99:108,0,163 0/0:6,0:6:3:0,3,44 +chr12 122727095 rs61954367 T C 259.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.242;DB;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.6442;MLEAC=3;MLEAF=0.375;MQ=33.15;MQ0=0;MQRankSum=-0.713;QD=5.53;ReadPosRankSum=-1.559;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:86:86,0,282 0/0:20,0:20:51:0,51,643 0/1:18,8:26:99:194,0,477 0/1:6,1:7:23:23,0,70 +chr12 122990128 . T G 492.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.242;DP=118;Dels=0.00;FS=82.603;HaplotypeScore=6.3462;MLEAC=4;MLEAF=0.500;MQ=22.78;MQ0=0;MQRankSum=-0.260;QD=4.17;ReadPosRankSum=2.696;SB=-1.305e+00 GT:AD:DP:GQ:PL 0/1:29,10:39:99:160,0,191 0/1:25,9:34:99:131,0,299 0/1:17,16:33:99:239,0,245 0/1:9,3:12:3:3,0,211 +chr12 122999596 . A C 223.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.085;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.2500;MLEAC=3;MLEAF=0.375;MQ=29.85;MQ0=0;MQRankSum=-3.550;QD=2.35;ReadPosRankSum=4.063;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,4:29:72:72,0,336 0/1:20,8:28:99:165,0,407 0/1:33,5:38:28:28,0,647 0/0:13,2:15:4:0,4,249 +chr12 123005015 . T A 73.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.216;DP=194;Dels=0.01;FS=0.000;HaplotypeScore=10.3262;MLEAC=3;MLEAF=0.375;MQ=31.43;MQ0=0;MQRankSum=-5.501;QD=0.51;ReadPosRankSum=3.406;SB=-1.061e+00 GT:AD:DP:GQ:PL 0/1:45,10:55:27:27,0,1070 0/0:49,2:51:46:0,46,1158 0/1:66,10:76:84:84,0,1429 0/1:10,1:11:3:3,0,242 +chr12 123261962 rs12307038 T C 41.29 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.113;DB;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=37.03;MQ0=0;MQRankSum=-2.232;QD=4.13;ReadPosRankSum=-0.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:48:0,48,624 0/1:7,3:10:77:77,0,215 0/0:12,0:12:33:0,33,437 0/0:3,1:4:6:0,6,50 +chr12 123273206 rs7486414 G A 189.14 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.831;DB;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7458;MLEAC=1;MLEAF=0.125;MQ=33.87;MQ0=0;MQRankSum=-1.700;QD=9.46;ReadPosRankSum=2.205;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:51:0,51,628 0/1:11,9:20:99:225,0,286 0/0:22,0:22:63:0,63,796 0/0:5,0:5:9:0,9,117 +chr12 123342628 rs3069144 CCTCTT C 4968 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.214;DB;DP=102;FS=7.473;HaplotypeScore=28.1913;MLEAC=7;MLEAF=0.875;MQ=29.35;MQ0=0;MQRankSum=-1.251;QD=48.71;ReadPosRankSum=0.406;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:10,14:22:54:1388,54,0 0/1:19,10:26:99:650,0,1189 1/1:2,23:24:69:1857,69,0 1/1:7,16:17:13:1073,13,0 +chr12 123344021 rs2271051 G A 38.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.861;DB;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7195;MLEAC=1;MLEAF=0.125;MQ=31.99;MQ0=0;MQRankSum=-0.737;QD=1.70;ReadPosRankSum=0.114;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:42:0,42,455 0/1:19,4:23:75:75,0,418 0/0:29,0:29:78:0,78,882 0/0:25,0:25:72:0,72,828 +chr12 123345762 . T A 162.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.417;DP=68;Dels=0.00;FS=10.187;HaplotypeScore=13.2605;MLEAC=3;MLEAF=0.375;MQ=27.86;MQ0=0;MQRankSum=0.010;QD=3.07;ReadPosRankSum=0.827;SB=-4.884e-01 GT:AD:DP:GQ:PL 0/1:7,5:12:69:105,0,69 0/1:12,4:16:79:79,0,178 0/1:22,3:25:20:20,0,365 0/0:14,1:15:3:0,3,222 +chr12 123424071 rs11060853 A G 75.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.727;DB;DP=5;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=26.74;MQ0=0;MQRankSum=0.727;QD=18.80;ReadPosRankSum=0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:79,6,0 ./. ./. 1/1:0,1:1:3:30,3,0 +chr12 123460389 . A G 51.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.343;DP=129;Dels=0.00;FS=4.630;HaplotypeScore=6.0398;MLEAC=2;MLEAF=0.250;MQ=34.37;MQ0=0;MQRankSum=-3.781;QD=0.99;ReadPosRankSum=-3.486;SB=-2.771e-03 GT:AD:DP:GQ:PL 0/0:32,1:33:33:0,33,738 0/1:22,4:28:54:54,0,517 0/0:44,0:44:99:0,105,1291 0/1:21,3:24:39:39,0,427 +chr12 123699200 rs142453785 GTTT G 3701 . AC=6;AF=0.750;AN=8;BaseQRankSum=-3.614;DB;DP=108;FS=0.000;HaplotypeScore=32.5528;MLEAC=6;MLEAF=0.750;MQ=31.78;MQ0=0;MQRankSum=-1.330;QD=34.27;RPA=6,3;RU=T;ReadPosRankSum=1.345;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:8,21:30:63:1200,63,0 1/1:9,20:31:20:1115,20,0 0/1:13,17:28:99:969,0,121 0/1:7,7:14:8:417,0,8 +chr12 124229458 . T A 542.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.738;DP=117;Dels=0.00;FS=141.111;HaplotypeScore=2.6836;MLEAC=4;MLEAF=0.500;MQ=38.12;MQ0=0;MQRankSum=-4.428;QD=4.64;ReadPosRankSum=0.523;SB=0.129 GT:AD:DP:GQ:PL 0/1:19,8:27:99:223,0,542 0/1:20,6:27:97:97,0,577 0/1:24,8:32:99:208,0,666 0/1:27,4:31:57:57,0,908 +chr12 124268699 . T A 312.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.645;DP=122;Dels=0.01;FS=9.711;HaplotypeScore=4.9250;MLEAC=4;MLEAF=0.500;MQ=34.50;MQ0=0;MQRankSum=-4.602;QD=2.56;ReadPosRankSum=4.473;SB=-1.618e-02 GT:AD:DP:GQ:PL 0/1:23,3:26:29:29,0,517 0/1:32,7:39:95:95,0,724 0/1:33,9:42:99:188,0,566 0/1:11,3:14:43:43,0,202 +chr12 124363724 rs60916296 GTGTC G 1801.03 . AC=8;AF=1.00;AN=8;BaseQRankSum=-1.398;DB;DP=41;FS=0.000;HaplotypeScore=9.7830;MLEAC=8;MLEAF=1.00;MQ=28.86;MQ0=0;MQRankSum=1.174;QD=43.93;RPA=3,2;RU=TGTC;ReadPosRankSum=-0.280;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:3,9:11:30:619,30,0 1/1:2,7:5:12:260,12,0 1/1:3,7:11:24:516,24,0 1/1:1,8:7:21:454,21,0 +chr12 124420076 . C A 70.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.564;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=17.0922;MLEAC=2;MLEAF=0.250;MQ=37.61;MQ0=0;MQRankSum=-3.465;QD=1.01;ReadPosRankSum=-2.296;SB=-6.114e-01 GT:AD:DP:GQ:PL 0/0:42,2:44:45:0,45,1415 0/0:33,2:35:32:0,32,1272 0/1:35,3:38:10:10,0,1013 0/1:27,5:32:99:101,0,739 +chr12 124856519 . A T 34.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.076;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=3.2979;MLEAC=3;MLEAF=0.375;MQ=27.42;MQ0=0;MQRankSum=1.032;QD=1.00;ReadPosRankSum=1.384;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:52:52,0,140 0/1:12,1:13:7:7,0,211 0/0:14,0:14:18:0,18,221 0/1:10,1:11:17:17,0,56 +chr12 124979789 rs872225 T G 127.10 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.833;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.2151;MLEAC=2;MLEAF=0.250;MQ=29.21;MQ0=0;MQRankSum=0.633;QD=8.47;ReadPosRankSum=-0.233;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:9:0,9,113 0/0:7,0:7:12:0,12,123 0/1:7,2:9:33:33,0,164 0/1:2,4:6:26:135,0,26 +chr12 125558558 . T G 64.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.770;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9366;MLEAC=3;MLEAF=0.375;MQ=34.88;MQ0=0;MQRankSum=-3.728;QD=0.74;ReadPosRankSum=1.532;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:33,2:35:35:0,35,792 0/1:34,3:37:44:44,0,659 0/1:38,3:41:13:13,0,763 0/1:7,2:9:50:50,0,113 +chr12 125834247 . T A 57.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.378;DP=191;Dels=0.02;FS=54.912;HaplotypeScore=23.7104;MLEAC=1;MLEAF=0.125;MQ=29.92;MQ0=0;MQRankSum=-2.276;QD=1.53;ReadPosRankSum=0.071;SB=-4.845e+00 GT:AD:DP:GQ:PL 0/0:39,1:40:47:0,47,834 0/0:54,1:55:74:0,74,1088 0/0:53,1:55:72:0,72,1092 0/1:31,6:37:94:94,0,407 +chr12 126845427 rs701028 C G 48.01 . AC=4;AF=1.00;AN=4;DB;DP=4;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=27.22;MQ0=0;QD=16.00;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3:41,3,0 1/1:1,1:2:3:40,3,0 +chr12 129190021 rs11059841 A G 883.86 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.199;DB;DP=50;Dels=0.00;FS=5.655;HaplotypeScore=1.5064;MLEAC=7;MLEAF=0.875;MQ=31.29;MQ0=0;MQRankSum=2.707;QD=17.68;ReadPosRankSum=-0.541;SB=-3.397e+02 GT:AD:DP:GQ:PL 1/1:3,6:9:18:221,18,0 0/1:8,3:11:19:78,0,19 1/1:3,14:17:39:457,39,0 1/1:8,5:13:15:172,15,0 +chr12 129822118 . G A 62.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.775;DP=82;Dels=0.02;FS=4.987;HaplotypeScore=34.6613;MLEAC=3;MLEAF=0.375;MQ=15.20;MQ0=0;MQRankSum=-0.308;QD=1.00;ReadPosRankSum=0.266;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:57:69,0,57 0/0:15,2:19:3:0,3,23 0/1:19,3:22:14:14,0,67 0/1:19,3:22:20:20,0,64 +chr12 130831707 rs9668900 T C 323.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.858;DB;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=37.93;MQ0=0;MQRankSum=-4.021;QD=7.52;ReadPosRankSum=0.610;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,8:21:99:166,0,487 0/0:22,0:22:63:0,63,871 0/1:15,7:22:99:199,0,508 0/0:8,0:8:21:0,21,274 +chr12 130834602 rs3736333 G A 391.39 . AC=3;AF=0.500;AN=6;BaseQRankSum=2.096;DB;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=34.15;MQ0=0;MQRankSum=-1.883;QD=26.09;ReadPosRankSum=-1.173;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:18:0,18,228 1/1:0,11:11:33:408,33,0 0/1:3,1:4:28:28,0,115 ./. +chr12 130963593 . G C,T 62.74 . AC=2,1;AF=0.250,0.125;AN=8;BaseQRankSum=-0.790;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=8.7207;MLEAC=2,1;MLEAF=0.250,0.125;MQ=15.91;MQ0=0;MQRankSum=2.778;QD=2.61;ReadPosRankSum=-0.637;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,1,0:11:3:0,3,27,3,27,27 0/0:9,0,0:9:6:0,6,48,6,48,48 0/1:11,3,0:15:15:66,0,15,69,24,93 1/2:6,1,2:9:23:71,42,39,29,0,23 +chr12 131466562 rs4759534 T C 3370.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.568;DB;DP=119;Dels=0.00;FS=25.121;HaplotypeScore=3.5964;MLEAC=8;MLEAF=1.00;MQ=30.91;MQ0=0;MQRankSum=3.257;QD=28.32;ReadPosRankSum=2.092;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:7,25:32:69:843,69,0 1/1:4,24:28:47:781,47,0 1/1:4,27:31:78:942,78,0 1/1:3,25:28:54:804,54,0 +chr12 131475568 . C A 30.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.432;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=10.7788;MLEAC=1;MLEAF=0.125;MQ=34.37;MQ0=0;MQRankSum=-1.884;QD=1.04;ReadPosRankSum=0.075;SB=-5.912e-03 GT:AD:DP:GQ:PL 0/0:30,1:31:33:0,33,645 0/1:24,4:29:66:66,0,430 0/0:30,2:33:16:0,16,684 0/0:26,1:27:28:0,28,563 +chr12 131487973 rs7301690 A G 211.68 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.738;DB;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=1.1830;MLEAC=6;MLEAF=0.750;MQ=24.44;MQ0=0;MQRankSum=1.603;QD=9.20;ReadPosRankSum=-0.801;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,40 0/1:9,2:11:56:56,0,118 1/1:4,2:6:6:76,6,0 1/1:0,5:5:12:125,12,0 +chr12 131977307 rs11061567 A G 93.04 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.724;DB;DP=54;Dels=0.02;FS=2.479;HaplotypeScore=3.6131;MLEAC=4;MLEAF=0.667;MQ=15.53;MQ0=0;MQRankSum=1.432;QD=1.90;ReadPosRankSum=-0.783;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:11,5:16:6:70,6,0 0/1:15,3:18:41:41,0,118 0/1:12,2:14:22:22,0,40 +chr12 132395371 . C G 57.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.203;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.8572;MLEAC=3;MLEAF=0.375;MQ=22.30;MQ0=0;MQRankSum=1.649;QD=1.79;ReadPosRankSum=-1.649;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:23:23,0,96 0/1:6,4:10:60:60,0,74 0/0:8,0:8:12:0,12,108 0/1:12,1:13:17:17,0,88 +chr12 132396603 rs11616018 C T 797.75 . AC=6;AF=0.750;AN=8;BaseQRankSum=4.180;DB;DP=73;Dels=0.00;FS=19.690;HaplotypeScore=6.3222;MLEAC=6;MLEAF=0.750;MQ=23.27;MQ0=0;MQRankSum=4.769;QD=10.93;ReadPosRankSum=-3.763;SB=-1.686e+02 GT:AD:DP:GQ:PL 0/1:7,5:12:8:121,0,8 0/1:14,9:23:1:242,0,1 1/1:9,6:16:18:209,18,0 1/1:10,11:22:27:267,27,0 +chr12 132426631 rs115537571 C A 50.07 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.956;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.3298;MLEAC=2;MLEAF=0.333;MQ=20.03;MQ0=0;MQRankSum=1.517;QD=7.15;ReadPosRankSum=0.322;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:2,2:4:25:61,0,25 0/0:2,0:2:3:0,3,23 ./. 0/1:2,1:3:20:26,0,20 +chr12 132471408 . T A 71.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.395;DP=127;Dels=0.03;FS=0.000;HaplotypeScore=14.9133;MLEAC=4;MLEAF=0.500;MQ=28.80;MQ0=0;MQRankSum=-1.336;QD=0.56;ReadPosRankSum=-1.463;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,2:31:34:34,0,337 0/1:31,3:34:20:20,0,492 0/1:33,3:36:45:45,0,434 0/1:20,2:22:15:15,0,208 +chr12 132529513 . G T 83.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.521;DP=35;Dels=0.00;FS=11.781;HaplotypeScore=7.4799;MLEAC=3;MLEAF=0.375;MQ=25.85;MQ0=0;MQRankSum=-0.765;QD=3.19;ReadPosRankSum=0.643;SB=6.51 GT:AD:DP:GQ:PL 0/1:7,3:10:39:39,0,96 0/1:3,4:8:49:68,0,49 0/1:7,1:8:19:19,0,60 0/0:8,0:9:15:0,15,148 +chr12 132604906 rs12303787 T C 144.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.448;DB;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=1.5448;MLEAC=2;MLEAF=0.250;MQ=31.35;MQ0=0;MQRankSum=-0.128;QD=8.51;ReadPosRankSum=-0.383;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:94:94,0,100 0/0:12,0:12:24:0,24,309 0/0:9,0:9:18:0,18,233 0/1:6,4:10:92:92,0,95 +chr12 133063106 rs7309093 T C 33.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DB;DP=10;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.79;MQ0=0;MQRankSum=1.026;QD=8.44;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:2,2:4:6:65,6,0 ./. +chr12 133148970 rs34140384 C T 41.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.057;DB;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9724;MLEAC=2;MLEAF=0.250;MQ=21.54;MQ0=0;MQRankSum=0.390;QD=2.97;ReadPosRankSum=-1.002;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:13:13,0,139 0/0:10,0:10:21:0,21,216 0/1:3,4:7:42:69,0,42 0/0:8,0:8:9:0,9,75 +chr12 133198364 . C G 35.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.690;DP=74;Dels=0.00;FS=2.349;HaplotypeScore=7.6405;MLEAC=3;MLEAF=0.375;MQ=25.65;MQ0=0;MQRankSum=-0.255;QD=0.62;ReadPosRankSum=1.738;SB=0.101 GT:AD:DP:GQ:PL 0/1:15,2:17:27:27,0,267 0/1:18,2:20:26:26,0,175 0/1:18,3:21:26:26,0,336 0/0:16,0:16:24:0,24,274 +chr12 133209317 . G T 60.42 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.629;DP=54;Dels=0.00;FS=17.751;HaplotypeScore=6.6734;MLEAC=3;MLEAF=0.375;MQ=23.77;MQ0=0;MQRankSum=-0.483;QD=1.37;ReadPosRankSum=0.555;SB=1.54 GT:AD:DP:GQ:PL 0/1:7,2:9:13:13,0,110 0/0:9,1:10:12:0,12,112 0/1:15,2:17:29:29,0,166 0/1:13,3:18:61:61,0,174 +chr12 133226159 rs4883613 T C 1375.85 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.159;DB;DP=62;Dels=0.03;FS=9.494;HaplotypeScore=3.4565;MLEAC=7;MLEAF=0.875;MQ=28.46;MQ0=0;MQRankSum=2.501;QD=22.19;ReadPosRankSum=0.237;SB=-5.436e+02 GT:AD:DP:GQ:PL 1/1:1,17:18:48:580,48,0 1/1:2,10:12:27:316,27,0 1/1:5,10:15:27:312,27,0 0/1:7,8:15:10:211,0,10 +chr12 133241085 . A C 71 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.333;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=9.5223;MLEAC=2;MLEAF=0.250;MQ=22.24;MQ0=0;MQRankSum=-0.493;QD=1.97;ReadPosRankSum=2.136;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,1:12:15:0,15,145 0/1:13,4:17:44:68,0,44 0/0:22,2:24:9:0,9,89 0/1:15,3:18:44:44,0,98 +chr12 133241949 . A C 60.24 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.546;DP=153;Dels=0.01;FS=9.050;HaplotypeScore=2.6123;MLEAC=1;MLEAF=0.125;MQ=37.24;MQ0=0;MQRankSum=-1.539;QD=1.51;ReadPosRankSum=-2.894;SB=-1.925e+00 GT:AD:DP:GQ:PL 0/0:38,3:41:7:0,7,1119 0/0:34,2:36:24:0,24,1005 0/0:33,2:35:31:0,31,1021 0/1:34,6:40:96:96,0,847 +chr12 133245092 . G C 37.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.038;DP=174;Dels=0.00;FS=104.521;HaplotypeScore=3.9240;MLEAC=1;MLEAF=0.125;MQ=37.14;MQ0=0;MQRankSum=-3.053;QD=0.95;ReadPosRankSum=-0.394;SB=-7.708e+00 GT:AD:DP:GQ:PL 0/0:39,2:42:52:0,52,1354 0/1:34,6:40:74:74,0,1031 0/0:45,0:45:99:0,114,1550 0/0:44,3:47:44:0,44,1457 +chr12 133294674 . T C 57.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.458;DP=127;Dels=0.00;FS=12.983;HaplotypeScore=3.0046;MLEAC=2;MLEAF=0.250;MQ=35.54;MQ0=0;MQRankSum=-0.987;QD=1.01;ReadPosRankSum=0.150;SB=-9.937e-01 GT:AD:DP:GQ:PL 0/1:23,2:25:11:11,0,558 0/1:27,5:32:87:87,0,695 0/0:32,0:32:72:0,72,930 0/0:37,1:38:54:0,54,931 +chr12 133365507 . A G 36.37 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.133;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.6908;MLEAC=5;MLEAF=0.625;MQ=17.02;MQ0=0;MQRankSum=2.152;QD=2.80;ReadPosRankSum=-2.606;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:18:21,0,18 0/0:4,0:4:3:0,3,26 1/1:2,2:4:3:32,3,0 1/1:3,1:4:3:25,3,0 +chr12 133367867 . G T 35.33 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.017;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.0424;MLEAC=1;MLEAF=0.125;MQ=30.64;MQ0=0;MQRankSum=-0.419;QD=0.35;ReadPosRankSum=0.650;SB=-3.487e+00 GT:AD:DP:GQ:PL 0/0:53,1:54:50:0,50,883 0/0:53,0:55:69:0,69,812 0/1:54,2:56:1:1,0,714 0/1:39,4:43:70:70,0,494 +chr12 133373366 . G A 264.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.091;DP=117;Dels=0.02;FS=0.000;HaplotypeScore=11.0104;MLEAC=4;MLEAF=0.500;MQ=29.68;MQ0=0;MQRankSum=-4.228;QD=2.26;ReadPosRankSum=0.703;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,7:32:99:146,0,423 0/1:27,5:32:71:71,0,462 0/1:20,3:23:33:33,0,332 0/1:20,8:28:57:57,0,325 +chr12 133375138 . G T 189.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.486;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=6.8630;MLEAC=4;MLEAF=0.500;MQ=24.79;MQ0=0;MQRankSum=-0.364;QD=2.87;ReadPosRankSum=-1.882;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,4:18:55:55,0,263 0/1:10,4:14:92:92,0,122 0/1:16,4:20:76:76,0,307 0/1:12,1:13:8:8,0,173 +chr13 19600126 rs4770636 G A 65.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=2.367;DB;DP=45;Dels=0.04;FS=7.928;HaplotypeScore=0.3670;MLEAC=4;MLEAF=1.00;MQ=8.07;MQ0=0;MQRankSum=2.141;QD=4.66;ReadPosRankSum=0.689;SB=-2.446e+01 GT:AD:DP:GQ:PL ./. ./. 1/1:3,6:9:6:72,6,0 1/1:2,1:3:3:27,3,0 +chr13 19740191 . G T 70.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.877;DP=68;Dels=0.00;FS=16.175;HaplotypeScore=1.6893;MLEAC=2;MLEAF=0.250;MQ=26.41;MQ0=0;MQRankSum=1.923;QD=2.01;ReadPosRankSum=2.344;SB=-6.064e-01 GT:AD:DP:GQ:PL 0/1:16,2:18:25:25,0,241 0/0:18,1:19:6:0,6,289 0/0:14,0:14:18:0,18,164 0/1:14,3:17:86:86,0,97 +chr13 19752510 . C T 33.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.468;DP=149;Dels=0.01;FS=39.742;HaplotypeScore=27.4768;MLEAC=2;MLEAF=0.250;MQ=14.46;MQ0=0;MQRankSum=1.520;QD=0.41;ReadPosRankSum=0.956;SB=0.207 GT:AD:DP:GQ:PL 0/1:34,6:40:49:49,0,114 0/0:39,1:40:18:0,18,150 0/1:37,4:41:26:26,0,114 0/0:27,0:27:12:0,12,118 +chr13 19997127 . A C 63.26 . AC=5;AF=0.833;AN=6;BaseQRankSum=-2.229;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.8637;MLEAC=5;MLEAF=0.833;MQ=11.55;MQ0=0;MQRankSum=3.459;QD=1.47;ReadPosRankSum=-1.634;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:10,1:11:3:35,3,0 0/1:14,4:18:28:42,0,28 1/1:13,1:14:3:24,3,0 ./. +chr13 20717471 . C T 123.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.931;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=9.9198;MLEAC=4;MLEAF=0.500;MQ=31.46;MQ0=0;MQRankSum=-1.356;QD=1.23;ReadPosRankSum=-0.066;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,2:21:18:18,0,345 0/1:21,3:26:48:48,0,449 0/1:25,5:30:88:88,0,425 0/1:21,2:23:12:12,0,391 +chr13 20763160 . C G 189.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.331;DP=122;Dels=0.00;FS=44.771;HaplotypeScore=5.6940;MLEAC=4;MLEAF=0.500;MQ=28.67;MQ0=0;MQRankSum=-1.900;QD=1.55;ReadPosRankSum=-0.092;SB=-1.198e-02 GT:AD:DP:GQ:PL 0/1:27,4:31:46:46,0,529 0/1:32,6:38:54:54,0,642 0/1:27,5:32:84:84,0,446 0/1:18,3:21:48:48,0,296 +chr13 20763693 . G T 1215.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.101;DP=187;Dels=0.00;FS=167.618;HaplotypeScore=10.3754;MLEAC=4;MLEAF=0.500;MQ=32.59;MQ0=0;MQRankSum=-1.507;QD=6.50;ReadPosRankSum=0.939;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,10:41:99:227,0,753 0/1:27,14:41:99:366,0,547 0/1:37,13:51:99:306,0,862 0/1:40,14:54:99:359,0,649 +chr13 21157257 rs35700311 GA G 502.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.578;DB;DP=66;FS=0.000;HaplotypeScore=8.3662;MLEAC=3;MLEAF=0.375;MQ=37.16;MQ0=0;MQRankSum=-1.415;QD=10.93;ReadPosRankSum=1.064;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:14,8:22:99:297,0,562 0/0:19,0:20:57:0,57,869 0/1:10,5:16:99:185,0,372 0/1:5,2:6:73:73,0,164 +chr13 21170446 . A G 58.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.128;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9254;MLEAC=3;MLEAF=0.375;MQ=29.93;MQ0=0;MQRankSum=0.128;QD=1.44;ReadPosRankSum=-0.128;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,3:17:24:24,0,120 0/1:14,3:17:49:49,0,269 0/0:16,0:16:24:0,24,246 0/1:6,1:7:29:29,0,93 +chr13 21523626 rs143637858 C T 508.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.939;DB;DP=132;Dels=0.00;FS=1.491;HaplotypeScore=0.2479;MLEAC=3;MLEAF=0.375;MQ=20.64;MQ0=0;MQRankSum=-0.036;QD=5.41;ReadPosRankSum=1.240;SB=-2.469e+02 GT:AD:DP:GQ:PL 0/1:11,16:27:99:170,0,149 0/0:38,0:38:48:0,48,558 0/1:16,17:33:99:201,0,143 0/1:18,16:34:99:181,0,276 +chr13 21714714 . G A 190.22 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.204;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.0219;MLEAC=6;MLEAF=0.750;MQ=29.70;MQ0=0;MQRankSum=1.184;QD=6.56;ReadPosRankSum=0.204;SB=0.012 GT:AD:DP:GQ:PL 0/1:6,4:10:40:106,0,40 1/1:6,1:7:3:28,3,0 0/1:7,2:9:44:44,0,59 1/1:1,2:3:6:55,6,0 +chr13 21875511 . C A 35.26 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.656;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=0.8253;MLEAC=4;MLEAF=0.500;MQ=18.86;MQ0=0;MQRankSum=0.027;QD=0.58;ReadPosRankSum=2.575;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,5:20:28:28,0,153 0/1:15,3:18:17:24,0,17 0/1:16,2:18:8:8,0,104 0/1:3,1:4:17:17,0,36 +chr13 23905711 rs2737699 A G 1680.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.161;DB;DP=153;Dels=0.00;FS=5.107;HaplotypeScore=2.7983;MLEAC=4;MLEAF=0.500;MQ=39.15;MQ0=0;MQRankSum=-2.379;QD=10.98;ReadPosRankSum=1.263;SB=-5.990e+02 GT:AD:DP:GQ:PL 0/1:22,19:41:99:632,0,714 0/1:37,13:50:99:399,0,1165 0/1:32,20:52:99:644,0,1139 0/1:8,2:10:48:48,0,291 +chr13 23915129 . A T 294.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.950;DP=114;Dels=0.00;FS=60.542;HaplotypeScore=7.8305;MLEAC=4;MLEAF=0.500;MQ=31.94;MQ0=0;MQRankSum=-3.887;QD=2.58;ReadPosRankSum=1.298;SB=-2.398e+01 GT:AD:DP:GQ:PL 0/1:23,6:29:91:91,0,561 0/1:34,9:43:99:157,0,940 0/1:28,5:33:45:45,0,681 0/1:7,2:9:44:44,0,98 +chr13 24190152 . C T 32.46 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.906;DP=162;Dels=0.00;FS=20.709;HaplotypeScore=3.6742;MLEAC=1;MLEAF=0.125;MQ=38.46;MQ0=0;MQRankSum=-3.692;QD=0.65;ReadPosRankSum=-1.342;SB=-5.896e+00 GT:AD:DP:GQ:PL 0/0:35,1:36:59:0,59,1155 0/0:31,0:31:84:0,84,1089 0/1:44,6:50:68:68,0,1356 0/0:41,4:45:4:0,4,1062 +chr13 24519995 . C G 63.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.038;DP=41;Dels=0.00;FS=2.560;HaplotypeScore=1.6892;MLEAC=3;MLEAF=0.375;MQ=25.56;MQ0=0;MQRankSum=0.675;QD=2.11;ReadPosRankSum=-0.727;SB=-2.451e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:24:24,0,131 0/1:9,1:10:17:17,0,97 0/0:11,0:11:12:0,12,151 0/1:10,3:13:65:65,0,66 +chr13 24823734 . T G 100.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.163;DP=71;Dels=0.00;FS=13.402;HaplotypeScore=14.1017;MLEAC=4;MLEAF=0.500;MQ=17.35;MQ0=0;MQRankSum=2.521;QD=1.98;ReadPosRankSum=-1.437;SB=1.15 GT:AD:DP:GQ:PL 0/1:12,1:13:15:15,0,43 0/1:15,5:20:54:54,0,74 0/0:19,1:20:6:0,6,44 1/1:14,4:18:9:77,9,0 +chr13 25009554 . T A 143.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.157;DP=67;Dels=0.01;FS=10.283;HaplotypeScore=24.2857;MLEAC=3;MLEAF=0.375;MQ=22.85;MQ0=0;MQRankSum=1.546;QD=2.43;ReadPosRankSum=0.698;SB=-2.056e-01 GT:AD:DP:GQ:PL 0/1:14,5:19:77:77,0,118 0/1:13,5:18:99:101,0,99 0/1:20,1:21:6:6,0,221 0/0:8,0:8:6:0,6,66 +chr13 25021154 rs61947037 C T 117.35 . AC=6;AF=1.00;AN=6;BaseQRankSum=-0.252;DB;DP=153;Dels=0.01;FS=3.182;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=5.40;MQ0=0;MQRankSum=-0.154;QD=1.06;ReadPosRankSum=-0.834;SB=-3.369e+01 GT:AD:DP:GQ:PL 1/1:2,28:30:9:93,9,0 ./. 1/1:30,19:49:3:34,3,0 1/1:20,11:31:3:26,3,0 +chr13 25074408 rs9581088 T C 135.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=3.838;DB;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.2235;MLEAC=2;MLEAF=0.250;MQ=19.21;MQ0=0;MQRankSum=-1.727;QD=1.61;ReadPosRankSum=0.683;SB=-8.122e-01 GT:AD:DP:GQ:PL 0/1:21,13:34:99:166,0,124 0/0:50,0:50:48:0,48,480 0/1:37,13:50:8:8,0,441 0/0:7,5:12:6:0,6,62 +chr13 25183166 rs117034113 C T 97.61 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.241;DB;DP=84;Dels=0.00;FS=2.609;HaplotypeScore=2.0311;MLEAC=5;MLEAF=0.625;MQ=12.20;MQ0=0;MQRankSum=-2.442;QD=1.46;ReadPosRankSum=-1.422;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,0:17:9:0,9,86 1/1:14,5:19:6:56,6,0 1/1:16,7:23:6:71,6,0 0/1:15,9:25:17:17,0,65 +chr13 25273013 . C A 60.31 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.585;DP=41;Dels=0.02;FS=5.724;HaplotypeScore=8.0217;MLEAC=4;MLEAF=0.667;MQ=17.01;MQ0=0;MQRankSum=1.426;QD=2.15;ReadPosRankSum=0.396;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,3:9:25:25,0,30 0/1:7,3:10:24:51,0,24 ./. 1/1:8,1:9:3:23,3,0 +chr13 25376681 . G T 261.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.282;DP=129;Dels=0.01;FS=11.810;HaplotypeScore=4.0505;MLEAC=4;MLEAF=0.500;MQ=34.58;MQ0=0;MQRankSum=-4.307;QD=2.03;ReadPosRankSum=0.000;SB=-1.523e-02 GT:AD:DP:GQ:PL 0/1:27,4:31:29:29,0,709 0/1:31,6:37:99:107,0,607 0/1:38,7:45:71:71,0,883 0/1:11,4:15:97:97,0,151 +chr13 25433128 . C A 149.49 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.859;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=5.8451;MLEAC=7;MLEAF=0.875;MQ=20.86;MQ0=0;MQRankSum=0.653;QD=4.67;ReadPosRankSum=-1.457;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:37:42,0,37 1/1:2,3:5:6:57,6,0 1/1:7,4:11:6:58,6,0 1/1:0,2:2:3:34,3,0 +chr13 25458267 rs35092002 G GAATT 1645.51 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.751;DB;DP=202;FS=0.000;HaplotypeScore=29.9276;MLEAC=2;MLEAF=0.250;MQ=32.85;MQ0=0;MQRankSum=-5.281;QD=16.29;RPA=1,2;RU=AATT;ReadPosRankSum=-0.619;SB=-5.530e+02;STR GT:AD:DP:GQ:PL 0/1:34,13:44:99:729,0,1648 0/1:37,15:48:99:967,0,1428 0/0:55,0:53:99:0,144,2985 0/0:44,0:41:99:0,114,2411 +chr13 25802491 rs4770813 A G 33.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=18.50;MQ0=0;MQRankSum=0.736;QD=11.01;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:2:3:28,3,0 1/1:0,1:1:3:38,3,0 +chr13 26127890 rs12853449 G A 976.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.442;DB;DP=158;Dels=0.00;FS=1.598;HaplotypeScore=1.4055;MLEAC=3;MLEAF=0.375;MQ=39.11;MQ0=0;MQRankSum=-1.792;QD=9.13;ReadPosRankSum=1.235;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:29,15:44:99:442,0,1040 0/0:51,0:51:99:0,135,1784 0/1:32,13:45:99:384,0,986 0/1:12,6:18:99:194,0,318 +chr13 26273385 rs6491088 G C 2247.03 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.937;DB;DP=105;Dels=0.02;FS=3.692;HaplotypeScore=13.0907;MLEAC=8;MLEAF=1.00;MQ=30.10;MQ0=0;MQRankSum=3.881;QD=21.40;ReadPosRankSum=1.189;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:7,14:22:14:430,14,0 1/1:4,20:24:60:724,60,0 1/1:11,27:38:66:814,66,0 1/1:9,10:19:27:318,27,0 +chr13 26343392 . C T 363.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.000;DP=66;Dels=0.02;FS=8.984;HaplotypeScore=4.5857;MLEAC=4;MLEAF=0.500;MQ=31.32;MQ0=0;MQRankSum=-1.344;QD=5.51;ReadPosRankSum=-0.241;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:89:93,0,89 0/1:8,6:14:43:166,0,43 0/1:17,5:22:91:91,0,208 0/1:14,4:18:56:56,0,152 +chr13 27861171 rs9512600 A G 47.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.09;MQ0=0;MQRankSum=0.736;QD=15.92;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,2:3:6:79,6,0 ./. +chr13 28009031 rs7323 G C 2479.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.450;DB;DP=327;Dels=0.00;FS=1.001;HaplotypeScore=3.9824;MLEAC=4;MLEAF=0.500;MQ=33.41;MQ0=0;MQRankSum=-0.978;QD=12.40;ReadPosRankSum=2.124;SB=-1.144e+03 GT:AD:DP:GQ:PL 0/0:127,0:127:99:0,367,4381 1/1:13,50:63:99:1793,150,0 0/1:64,24:88:99:569,0,1863 0/1:40,9:49:99:166,0,960 +chr13 28607916 rs2491222 T A 579.90 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.775;DB;DP=32;Dels=0.00;FS=8.981;HaplotypeScore=0.2496;MLEAC=7;MLEAF=0.875;MQ=33.05;MQ0=0;MQRankSum=-1.033;QD=18.12;ReadPosRankSum=1.377;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:368,30,0 0/1:10,2:12:40:40,0,332 1/1:1,5:6:15:173,15,0 1/1:2,1:3:3:42,3,0 +chr13 28958961 . A T 54.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.414;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8883;MLEAC=3;MLEAF=0.375;MQ=31.09;MQ0=0;MQRankSum=-1.186;QD=0.93;ReadPosRankSum=1.357;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:50:50,0,307 0/1:19,2:21:22:22,0,320 0/1:16,2:18:25:25,0,187 0/0:8,0:8:15:0,15,178 +chr13 30077129 . G C 328.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.781;DP=95;Dels=0.00;FS=7.540;HaplotypeScore=8.6272;MLEAC=4;MLEAF=0.500;MQ=31.34;MQ0=0;MQRankSum=-2.675;QD=3.46;ReadPosRankSum=-0.183;SB=-1.296e-02 GT:AD:DP:GQ:PL 0/1:21,5:26:99:108,0,324 0/1:15,4:20:94:94,0,245 0/1:27,3:31:32:32,0,516 0/1:11,6:18:99:137,0,180 +chr13 31036681 rs1929606 A G 3797.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.344;DB;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.1835;MLEAC=8;MLEAF=1.00;MQ=24.22;MQ0=0;MQRankSum=1.004;QD=19.88;ReadPosRankSum=0.364;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:4,47:51:99:1048,99,0 1/1:6,54:60:80:1166,80,0 1/1:4,43:47:81:917,81,0 1/1:1,32:33:63:666,63,0 +chr13 31037903 rs2249825 G C 1521.72 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.298;DB;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=7;MLEAF=0.875;MQ=37.40;MQ0=0;MQRankSum=-0.202;QD=33.82;ReadPosRankSum=0.260;SB=-4.001e+01 GT:AD:DP:GQ:PL 1/1:2,20:22:34:778,34,0 0/1:1,7:8:12:234,0,12 1/1:1,11:12:33:427,33,0 1/1:0,3:3:9:126,9,0 +chr13 31221021 . T C 80.43 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.393;DP=44;Dels=0.05;FS=5.618;HaplotypeScore=9.2726;MLEAC=4;MLEAF=0.500;MQ=21.09;MQ0=0;MQRankSum=0.938;QD=1.92;ReadPosRankSum=1.241;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,1:11:8:8,0,100 1/1:13,4:17:12:109,12,0 0/1:10,2:12:7:7,0,87 0/0:2,0:2:3:0,3,23 +chr13 31495733 rs6563571 C T 143.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.677;DB;DP=98;Dels=0.00;FS=1.572;HaplotypeScore=1.7111;MLEAC=1;MLEAF=0.125;MQ=31.89;MQ0=0;MQRankSum=-1.460;QD=6.81;ReadPosRankSum=-1.132;SB=-4.979e+01 GT:AD:DP:GQ:PL 0/1:14,7:21:99:179,0,251 0/0:36,0:36:96:0,96,1099 0/0:37,0:37:99:0,105,1312 0/0:4,0:4:12:0,12,142 +chr13 31848823 rs728930 A G 1364.80 . AC=6;AF=0.750;AN=8;BaseQRankSum=4.254;DB;DP=55;Dels=0.00;FS=5.863;HaplotypeScore=0.1972;MLEAC=6;MLEAF=0.750;MQ=34.27;MQ0=0;MQRankSum=-0.168;QD=24.81;ReadPosRankSum=-0.977;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,7:15:99:238,0,206 0/1:5,6:11:99:172,0,153 1/1:1,19:20:57:689,57,0 1/1:1,8:9:24:312,24,0 +chr13 31861059 rs1397890 G A 58.70 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.517;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.2774;MLEAC=3;MLEAF=0.500;MQ=26.31;MQ0=0;MQRankSum=0.322;QD=7.34;ReadPosRankSum=-1.920;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,35 0/1:5,1:6:31:31,0,62 1/1:0,2:2:6:67,6,0 ./. +chr13 32376718 rs7338341 A G 45.77 . AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.44;MQ0=0;QD=11.44;SB=-3.476e+01 GT:AD:DP:GQ:PL ./. 1/1:2,2:4:6:77,6,0 ./. ./. +chr13 32776153 rs9567420 T C 185 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.257;DB;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7529;MLEAC=1;MLEAF=0.125;MQ=33.23;MQ0=0;MQRankSum=-1.846;QD=5.78;ReadPosRankSum=-0.429;SB=-8.998e+01 GT:AD:DP:GQ:PL 0/1:23,9:32:99:221,0,438 0/0:28,0:28:75:0,75,898 0/0:30,0:30:72:0,72,858 0/0:12,0:12:24:0,24,254 +chr13 32776253 rs2520704 A T 257 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.468;DB;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=39.24;MQ0=0;MQRankSum=-3.171;QD=8.29;ReadPosRankSum=1.813;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:32,0:32:96:0,96,1313 0/1:21,10:31:99:293,0,750 0/0:24,0:24:72:0,72,991 0/0:8,0:8:21:0,21,266 +chr13 32800145 rs45612031 A C 1198.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.185;DB;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.2499;MLEAC=3;MLEAF=0.375;MQ=40.74;MQ0=0;MQRankSum=-1.628;QD=16.88;ReadPosRankSum=3.052;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,0:22:66:0,66,914 0/1:13,13:26:99:471,0,398 0/1:14,14:28:99:490,0,417 0/1:9,8:17:99:281,0,208 +chr13 32821633 . T C 545.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.507;DP=98;Dels=0.00;FS=33.985;HaplotypeScore=8.9917;MLEAC=4;MLEAF=0.500;MQ=30.62;MQ0=0;MQRankSum=-2.181;QD=5.57;ReadPosRankSum=4.515;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,9:29:99:220,0,307 0/1:19,9:28:99:180,0,251 0/1:18,7:26:99:112,0,261 0/1:12,3:15:20:76,0,20 +chr13 32825941 rs2806633 C A 158.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.999;DB;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=37.53;MQ0=0;MQRankSum=-1.668;QD=3.24;ReadPosRankSum=0.471;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:41:41,0,392 0/1:27,7:34:99:159,0,916 0/0:31,0:31:90:0,90,1168 0/0:11,0:11:33:0,33,400 +chr13 32835573 . A C 106.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.271;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.4541;MLEAC=4;MLEAF=0.500;MQ=34.82;MQ0=0;MQRankSum=-3.305;QD=0.98;ReadPosRankSum=1.323;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:36,4:40:33:33,0,858 0/1:28,2:30:2:2,0,676 0/1:27,4:31:73:73,0,513 0/1:6,2:8:39:39,0,189 +chr13 32836587 . A C 58.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.829;DP=100;Dels=0.00;FS=50.088;HaplotypeScore=12.3692;MLEAC=1;MLEAF=0.125;MQ=31.28;MQ0=0;MQRankSum=-1.903;QD=2.18;ReadPosRankSum=1.484;SB=2.17 GT:AD:DP:GQ:PL 0/0:27,0:27:48:0,48,522 0/1:20,6:27:95:95,0,336 0/0:28,1:29:54:0,54,594 0/0:17,0:17:33:0,33,426 +chr13 32885744 . G T 33.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.185;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=1.2318;MLEAC=3;MLEAF=0.375;MQ=21.96;MQ0=0;MQRankSum=0.829;QD=2.82;ReadPosRankSum=1.185;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:15:0,15,151 0/1:6,1:7:19:24,0,19 1/1:2,2:4:6:54,6,0 0/0:5,0:5:6:0,6,49 +chr13 33268573 rs561056 T C 66.47 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.109;DB;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=0.250;MQ=29.96;MQ0=0;MQRankSum=-0.925;QD=13.29;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:12:0,12,167 1/1:2,3:5:9:108,9,0 0/0:4,0:4:6:0,6,72 0/0:2,0:2:3:0,3,32 +chr13 33333876 rs7988089 A C 711.24 . AC=3;AF=0.500;AN=6;BaseQRankSum=3.027;DB;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.8733;MLEAC=3;MLEAF=0.500;MQ=33.16;MQ0=0;MQRankSum=-1.560;QD=16.93;ReadPosRankSum=0.899;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:69:0,69,847 1/1:2,20:22:51:610,51,0 0/1:15,5:20:99:146,0,411 ./. +chr13 33635939 rs650439 T A 2920.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.938;DB;DP=89;Dels=0.01;FS=30.741;HaplotypeScore=1.7088;MLEAC=8;MLEAF=1.00;MQ=34.34;MQ0=0;MQRankSum=2.668;QD=32.82;ReadPosRankSum=0.695;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:2,19:21:57:712,57,0 1/1:0,20:20:60:763,60,0 1/1:3,22:25:66:858,66,0 1/1:4,18:22:24:627,24,0 +chr13 33686970 . T C 251.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.185;DP=230;Dels=0.00;FS=36.202;HaplotypeScore=14.8530;MLEAC=4;MLEAF=0.500;MQ=31.66;MQ0=0;MQRankSum=-4.340;QD=1.09;ReadPosRankSum=0.070;SB=-1.574e-02 GT:AD:DP:GQ:PL 0/1:52,6:58:42:42,0,1250 0/1:56,7:63:30:30,0,1282 0/1:48,6:54:47:47,0,1060 0/1:44,10:54:99:175,0,860 +chr13 33692217 . G T 74.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.445;DP=159;Dels=0.00;FS=40.528;HaplotypeScore=4.9149;MLEAC=1;MLEAF=0.125;MQ=34.07;MQ0=0;MQRankSum=-2.417;QD=3.52;ReadPosRankSum=1.839;SB=-6.401e+00 GT:AD:DP:GQ:PL 0/0:40,3:43:24:0,24,1238 0/0:47,3:51:18:0,18,1090 0/0:42,2:44:38:0,38,1082 0/1:17,4:21:99:110,0,243 +chr13 34404793 . A T 47.57 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.404;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7175;MLEAC=1;MLEAF=0.125;MQ=35.91;MQ0=0;MQRankSum=0.538;QD=1.90;ReadPosRankSum=1.328;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:39:0,39,461 0/1:20,5:25:83:83,0,463 0/0:28,1:29:42:0,42,732 0/0:7,0:7:3:0,3,41 +chr13 35806862 rs114146564 G T 101.30 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.071;DB;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=0.4833;MLEAC=1;MLEAF=0.125;MQ=29.90;MQ0=0;MQRankSum=-0.212;QD=7.79;ReadPosRankSum=0.542;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,5:13:99:137,0,199 0/0:9,0:9:27:0,27,311 0/0:13,0:13:30:0,30,373 0/0:2,0:2:6:0,6,66 +chr13 35926354 . A G 475.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.528;DP=187;Dels=0.01;FS=172.955;HaplotypeScore=8.5135;MLEAC=4;MLEAF=0.500;MQ=31.94;MQ0=0;MQRankSum=-5.203;QD=2.54;ReadPosRankSum=4.912;SB=-2.047e+00 GT:AD:DP:GQ:PL 0/1:43,6:49:56:56,0,1140 0/1:39,13:52:99:217,0,1017 0/1:59,16:75:99:189,0,1380 0/1:6,3:9:56:56,0,186 +chr13 36046486 . C A 36.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.189;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1755;MLEAC=3;MLEAF=0.375;MQ=25.30;MQ0=0;MQRankSum=-0.577;QD=1.22;ReadPosRankSum=0.034;SB=-1.217e-02 GT:AD:DP:GQ:PL 0/0:7,1:8:12:0,12,132 0/1:11,1:12:12:12,0,84 0/1:9,1:10:27:27,0,88 0/1:6,2:8:40:40,0,92 +chr13 36229873 rs2274550 C T 314.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.240;DB;DP=174;Dels=0.00;FS=4.359;HaplotypeScore=0.9968;MLEAC=1;MLEAF=0.125;MQ=41.64;MQ0=0;MQRankSum=-1.489;QD=10.86;ReadPosRankSum=0.826;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,144,1968 0/1:18,11:29:99:351,0,528 0/0:51,0:51:99:0,147,2050 0/0:45,0:45:99:0,129,1759 +chr13 36767708 . T C 234.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.343;DP=89;Dels=0.01;FS=2.653;HaplotypeScore=2.8948;MLEAC=3;MLEAF=0.375;MQ=23.85;MQ0=0;MQRankSum=1.191;QD=4.20;ReadPosRankSum=4.850;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,3:16:15:40,0,15 0/1:18,13:31:99:217,0,228 0/0:31,0:32:21:0,21,176 0/1:8,1:9:21:21,0,46 +chr13 36801415 rs9546785 C T 2116.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.050;DB;DP=115;Dels=0.00;FS=3.494;HaplotypeScore=7.2289;MLEAC=5;MLEAF=0.625;MQ=34.55;MQ0=0;MQRankSum=1.701;QD=18.40;ReadPosRankSum=-0.355;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:12,12:24:99:407,0,356 1/1:2,27:29:81:1011,81,0 0/1:17,14:31:99:421,0,489 0/1:21,10:31:99:323,0,417 +chr13 36869894 . T C 36.94 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.374;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=13.1158;MLEAC=2;MLEAF=0.250;MQ=21.58;MQ0=0;MQRankSum=0.648;QD=1.42;ReadPosRankSum=-0.700;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:12:12,0,67 0/1:13,4:17:64:64,0,80 0/0:13,1:15:3:0,3,38 0/0:6,0:6:9:0,9,89 +chr13 37012024 . G A 288.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.432;DP=153;Dels=0.01;FS=78.031;HaplotypeScore=7.6922;MLEAC=4;MLEAF=0.500;MQ=36.79;MQ0=0;MQRankSum=-3.203;QD=1.89;ReadPosRankSum=1.632;SB=-1.256e+00 GT:AD:DP:GQ:PL 0/1:37,3:40:4:4,0,846 0/1:40,5:45:68:68,0,1032 0/1:34,6:40:99:103,0,864 0/1:21,6:27:99:155,0,380 +chr13 37207193 rs2678243 T C 49.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DB;DP=7;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.36;MQ0=0;MQRankSum=1.026;QD=9.95;ReadPosRankSum=-1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:3,2:5:6:81,6,0 ./. +chr13 37302582 . T A 56.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.373;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=10.0266;MLEAC=3;MLEAF=0.375;MQ=26.18;MQ0=0;MQRankSum=-0.135;QD=1.70;ReadPosRankSum=0.673;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:32:32,0,97 0/0:17,0:17:15:0,15,204 0/1:15,3:18:48:48,0,114 0/1:3,1:4:19:19,0,36 +chr13 37500596 . A T 40.26 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.106;DP=14;Dels=0.00;FS=7.160;HaplotypeScore=2.3575;MLEAC=3;MLEAF=0.750;MQ=16.87;MQ0=0;MQRankSum=1.708;QD=3.36;ReadPosRankSum=-1.377;SB=0.948 GT:AD:DP:GQ:PL ./. ./. 0/1:3,2:5:32:48,0,32 1/1:6,1:7:3:27,3,0 +chr13 37678264 . T A 64.72 . AC=2;AF=0.333;AN=6;BaseQRankSum=-3.050;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.0935;MLEAC=2;MLEAF=0.333;MQ=27.65;MQ0=0;MQRankSum=-2.025;QD=2.94;ReadPosRankSum=3.440;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:34:34,0,130 0/1:7,4:11:68:68,0,156 0/0:9,2:11:4:0,4,277 ./. +chr13 38144842 . C G 192.36 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.510;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.7154;MLEAC=5;MLEAF=0.625;MQ=28.94;MQ0=0;MQRankSum=-0.202;QD=2.67;ReadPosRankSum=-0.844;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,4:24:79:79,0,114 0/1:18,2:20:21:21,0,110 0/1:18,4:22:70:70,0,197 1/1:3,3:6:6:66,6,0 +chr13 38172896 rs3829365 G C 173.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.862;DB;DP=160;Dels=0.01;FS=9.581;HaplotypeScore=0.5127;MLEAC=1;MLEAF=0.125;MQ=35.92;MQ0=0;MQRankSum=-0.061;QD=4.70;ReadPosRankSum=0.558;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,126,1619 0/1:29,8:37:99:210,0,889 0/0:52,0:52:99:0,141,1777 0/0:26,0:26:60:0,60,732 +chr13 38924263 rs2231332 T C 5292.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.415;DB;DP=153;Dels=0.01;FS=3.940;HaplotypeScore=3.1192;MLEAC=8;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=2.223;QD=34.59;ReadPosRankSum=0.532;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:3,32:35:96:1252,96,0 1/1:0,36:36:99:1369,108,0 1/1:5,42:47:99:1622,126,0 1/1:4,29:33:61:1049,61,0 +chr13 39265938 . A T 58.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.693;DP=166;Dels=0.01;FS=40.649;HaplotypeScore=3.2782;MLEAC=2;MLEAF=0.250;MQ=37.03;MQ0=0;MQRankSum=-1.239;QD=0.76;ReadPosRankSum=0.405;SB=-1.960e-01 GT:AD:DP:GQ:PL 0/1:39,4:43:25:25,0,953 0/0:39,2:41:16:0,16,955 0/0:45,1:46:64:0,64,1179 0/1:30,4:34:75:75,0,732 +chr13 39613611 . A G 287.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.108;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=35.03;MQ0=0;MQRankSum=-1.708;QD=9.92;ReadPosRankSum=-2.629;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:30:0,30,382 0/1:12,6:18:99:172,0,422 0/1:6,5:11:99:157,0,129 0/0:5,0:5:12:0,12,136 +chr13 40181185 rs9315712 G A 61.98 . AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=0;QD=20.66;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:9:94,9,0 ./. ./. ./. +chr13 40301683 . G A 60.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.257;DP=166;Dels=0.00;FS=2.209;HaplotypeScore=0.4816;MLEAC=2;MLEAF=0.250;MQ=34.95;MQ0=0;MQRankSum=-3.162;QD=1.00;ReadPosRankSum=-1.321;SB=-1.992e+00 GT:AD:DP:GQ:PL 0/0:49,4:53:11:0,11,972 0/1:45,7:52:90:90,0,1165 0/0:51,1:52:99:0,102,1269 0/1:7,2:9:11:11,0,105 +chr13 40652219 rs9576942 G A 40.25 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.495;DB;DP=12;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=19.43;MQ0=0;MQRankSum=0.922;QD=5.03;ReadPosRankSum=-0.198;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,32 1/1:4,1:5:3:41,3,0 ./. 1/1:2,1:3:3:37,3,0 +chr13 41948805 . C G 30.06 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.638;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.4419;MLEAC=2;MLEAF=0.250;MQ=32.26;MQ0=0;MQRankSum=-1.064;QD=1.37;ReadPosRankSum=2.256;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:18:0,18,196 0/1:8,3:11:61:61,0,118 0/1:10,1:11:8:8,0,111 0/0:4,0:4:6:0,6,63 +chr13 42644580 rs7997363 A T 165.59 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.779;DB;DP=54;Dels=0.00;FS=3.921;HaplotypeScore=1.9785;MLEAC=3;MLEAF=0.375;MQ=16.82;MQ0=0;MQRankSum=1.394;QD=4.73;ReadPosRankSum=2.106;SB=-2.766e+01 GT:AD:DP:GQ:PL 0/0:19,0:19:15:0,15,172 0/1:3,11:14:3:149,0,3 0/1:11,6:17:27:27,0,48 0/1:3,1:4:25:32,0,25 +chr13 42875683 rs41288309 A G 259.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.126;DB;DP=143;Dels=0.00;FS=8.055;HaplotypeScore=0.6706;MLEAC=1;MLEAF=0.125;MQ=39.95;MQ0=0;MQRankSum=0.133;QD=8.67;ReadPosRankSum=1.322;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,126,1623 0/1:21,9:30:99:296,0,626 0/0:54,0:54:99:0,153,2013 0/0:11,0:11:33:0,33,424 +chr13 44456349 . A C 52.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.485;DP=116;Dels=0.00;FS=33.987;HaplotypeScore=0.4993;MLEAC=3;MLEAF=0.375;MQ=35.83;MQ0=0;MQRankSum=-3.891;QD=0.69;ReadPosRankSum=0.848;SB=0.293 GT:AD:DP:GQ:PL 0/1:33,6:39:33:33,0,888 0/0:39,1:40:54:0,54,1111 0/1:25,3:28:32:32,0,678 0/1:7,2:9:31:31,0,165 +chr13 44456507 . T A 75.13 . AC=3;AF=0.750;AN=4;BaseQRankSum=-0.193;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=11.2976;MLEAC=4;MLEAF=1.00;MQ=17.09;MQ0=0;MQRankSum=1.892;QD=4.42;ReadPosRankSum=0.627;SB=29.78 GT:AD:DP:GQ:PL 0/1:8,4:12:8:86,0,8 ./. ./. 1/1:3,2:5:3:22,3,0 +chr13 45150078 . C A 39.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.464;DP=22;Dels=0.00;FS=3.010;HaplotypeScore=2.5148;MLEAC=3;MLEAF=0.375;MQ=27.07;MQ0=0;MQRankSum=-1.898;QD=2.06;ReadPosRankSum=0.705;SB=-5.918e-02 GT:AD:DP:GQ:PL 0/0:2,1:3:3:0,3,36 0/1:5,1:6:17:17,0,54 0/1:5,1:6:16:16,0,81 0/1:4,3:7:43:47,0,43 +chr13 45554933 . T G 77.09 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.174;DP=76;Dels=0.01;FS=2.332;HaplotypeScore=1.2183;MLEAC=3;MLEAF=0.375;MQ=19.70;MQ0=0;MQRankSum=2.386;QD=1.12;ReadPosRankSum=-1.073;SB=0.886 GT:AD:DP:GQ:PL 0/1:22,1:23:16:16,0,44 0/1:17,3:20:42:74,0,42 0/1:23,3:26:29:29,0,121 0/0:6,0:6:6:0,6,45 +chr13 46067593 rs2985959 G A 3376.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.345;DB;DP=171;Dels=0.00;FS=8.306;HaplotypeScore=2.0728;MLEAC=6;MLEAF=0.750;MQ=35.58;MQ0=0;MQRankSum=-2.238;QD=19.74;ReadPosRankSum=0.588;SB=-4.380e+02 GT:AD:DP:GQ:PL 0/1:31,21:52:99:624,0,963 0/1:34,18:52:99:563,0,1013 1/1:8,48:56:99:1827,144,0 1/1:1,10:11:27:362,27,0 +chr13 46070213 . G A 105.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.068;DP=71;Dels=0.03;FS=2.613;HaplotypeScore=13.8695;MLEAC=3;MLEAF=0.375;MQ=22.28;MQ0=0;MQRankSum=1.124;QD=1.83;ReadPosRankSum=3.290;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:75:75,0,100 0/1:15,3:18:30:30,0,70 0/1:17,3:21:42:42,0,76 0/0:11,2:13:3:0,3,22 +chr13 46425523 . G A 55.28 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.078;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=1.6135;MLEAC=2;MLEAF=0.250;MQ=32.84;MQ0=0;MQRankSum=-0.537;QD=1.68;ReadPosRankSum=-0.784;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,1:18:2:0,2,386 0/0:11,0:11:27:0,27,313 0/1:12,4:16:89:89,0,269 0/1:15,1:16:1:1,0,323 +chr13 46543419 . G T 244.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.843;DP=119;Dels=0.01;FS=49.606;HaplotypeScore=8.8688;MLEAC=3;MLEAF=0.375;MQ=30.55;MQ0=0;MQRankSum=-5.928;QD=3.10;ReadPosRankSum=5.134;SB=1.12 GT:AD:DP:GQ:PL 0/1:17,13:30:99:175,0,381 0/1:18,6:24:79:79,0,379 0/0:33,6:39:27:0,27,829 0/1:19,6:25:34:34,0,431 +chr13 46924324 . C A 99.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.300;DP=158;Dels=0.00;FS=112.294;HaplotypeScore=5.6304;MLEAC=4;MLEAF=0.500;MQ=34.25;MQ0=0;MQRankSum=-3.490;QD=0.63;ReadPosRankSum=0.734;SB=-2.521e+00 GT:AD:DP:GQ:PL 0/1:30,4:34:34:34,0,837 0/1:34,5:39:33:33,0,769 0/1:34,5:39:25:25,0,848 0/1:41,5:46:50:50,0,935 +chr13 46936649 . G C 222.78 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.546;DP=47;Dels=0.02;FS=17.732;HaplotypeScore=7.5518;MLEAC=4;MLEAF=0.500;MQ=21.75;MQ0=0;MQRankSum=1.244;QD=4.74;ReadPosRankSum=-1.026;SB=0.206 GT:AD:DP:GQ:PL 0/1:7,5:12:16:78,0,16 0/1:9,3:12:14:59,0,14 0/1:8,4:12:43:70,0,43 0/1:7,3:10:16:58,0,16 +chr13 47266648 . A G 1012.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.351;DP=98;Dels=0.00;FS=7.691;HaplotypeScore=18.2636;MLEAC=4;MLEAF=0.500;MQ=26.86;MQ0=0;MQRankSum=1.947;QD=10.33;ReadPosRankSum=1.925;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,16:23:49:467,0,49 0/1:15,11:26:64:247,0,64 0/1:13,9:22:56:215,0,56 0/1:21,6:27:25:126,0,25 +chr13 47356999 . G C 74.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.051;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.7610;MLEAC=3;MLEAF=0.375;MQ=33.48;MQ0=0;MQRankSum=0.173;QD=0.91;ReadPosRankSum=2.730;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,3:23:56:56,0,307 0/1:23,3:26:53:53,0,435 0/1:31,2:33:7:7,0,428 0/0:8,0:8:12:0,12,139 +chr13 47358540 rs8192889 T C 994.71 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.735;DB;DP=45;Dels=0.00;FS=11.461;HaplotypeScore=1.1903;MLEAC=8;MLEAF=1.00;MQ=25.32;MQ0=0;MQRankSum=1.123;QD=22.10;ReadPosRankSum=2.149;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,10:14:2:231,0,2 1/1:0,13:13:36:349,36,0 1/1:1,12:13:30:332,30,0 1/1:1,4:5:12:122,12,0 +chr13 49649596 . T G 179.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.474;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=0.9576;MLEAC=2;MLEAF=0.250;MQ=31.44;MQ0=0;MQRankSum=-0.241;QD=2.68;ReadPosRankSum=3.537;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,7:34:99:148,0,461 0/1:26,6:33:72:72,0,524 0/0:29,2:31:7:0,7,564 0/0:2,0:2:6:0,6,52 +chr13 49794767 rs141734443 C A 62.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.186;DB;DP=33;Dels=0.00;FS=2.682;HaplotypeScore=1.5971;MLEAC=4;MLEAF=0.500;MQ=30.62;MQ0=0;MQRankSum=-1.528;QD=2.86;ReadPosRankSum=2.199;SB=-3.134e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:57,6,0 0/0:11,0:11:15:0,15,190 0/1:7,2:9:41:41,0,214 0/1:8,1:9:10:10,0,85 +chr13 50080847 rs2031532 A G 2222.85 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.927;DB;DP=69;Dels=0.01;FS=2.272;HaplotypeScore=1.5158;MLEAC=7;MLEAF=0.875;MQ=38.79;MQ0=0;MQRankSum=1.532;QD=32.22;ReadPosRankSum=2.545;SB=-4.541e+02 GT:AD:DP:GQ:PL 1/1:1,12:14:36:482,36,0 1/1:2,22:24:38:862,38,0 1/1:3,19:22:24:737,24,0 0/1:3,5:8:17:186,0,17 +chr13 50192259 rs3969 C T 37.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.74;MQ0=0;MQRankSum=0.736;QD=12.59;ReadPosRankSum=0.736;SB=-3.076e+01 GT:AD:DP:GQ:PL ./. 1/1:1,2:3:6:69,6,0 ./. ./. +chr13 50205111 . C T 52.27 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.635;DP=25;Dels=0.00;FS=11.326;HaplotypeScore=4.4773;MLEAC=3;MLEAF=0.375;MQ=22.16;MQ0=0;MQRankSum=2.646;QD=2.75;ReadPosRankSum=-2.540;SB=2.06 GT:AD:DP:GQ:PL 1/1:4,1:5:3:43,3,0 0/0:6,0:6:12:0,12,109 0/1:3,1:4:19:24,0,19 0/1:9,1:10:29:29,0,67 +chr13 50275515 rs7446 C T 138.35 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.453;DB;DP=12;Dels=0.00;FS=7.404;HaplotypeScore=1.0796;MLEAC=6;MLEAF=1.00;MQ=22.06;MQ0=0;MQRankSum=2.450;QD=12.58;ReadPosRankSum=-1.668;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:36,3,0 1/1:5,1:6:3:23,3,0 1/1:0,3:3:9:115,9,0 ./. +chr13 50467124 rs7316930 T C 231.92 . AC=6;AF=1.00;AN=6;BaseQRankSum=3.216;DB;DP=62;Dels=0.00;FS=8.862;HaplotypeScore=1.1497;MLEAC=6;MLEAF=1.00;MQ=10.65;MQ0=0;MQRankSum=0.724;QD=4.22;ReadPosRankSum=2.711;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,14:16:9:100,9,0 1/1:2,23:25:9:79,9,0 1/1:2,12:14:9:90,9,0 ./. +chr13 51285982 . T A 31.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=4;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.99;MQ0=0;MQRankSum=0.736;QD=7.94;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:2,2:4:6:63,6,0 ./. +chr13 51523619 . C A 61.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.345;DP=112;Dels=0.00;FS=44.085;HaplotypeScore=3.9208;MLEAC=1;MLEAF=0.125;MQ=37.29;MQ0=0;MQRankSum=-1.390;QD=1.74;ReadPosRankSum=-0.534;SB=-6.012e+00 GT:AD:DP:GQ:PL 0/0:31,2:33:17:0,17,905 0/1:30,5:35:97:97,0,809 0/0:33,1:34:45:0,45,992 0/0:10,0:10:21:0,21,268 +chr13 51602562 . T A 72.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.464;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.6957;MLEAC=3;MLEAF=0.375;MQ=35.32;MQ0=0;MQRankSum=-2.550;QD=0.69;ReadPosRankSum=3.338;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/1:36,5:42:94:94,0,609 0/0:38,2:40:56:0,56,991 0/1:36,3:39:10:10,0,873 0/1:22,2:24:11:11,0,439 +chr13 51825548 rs3825409 T C 458.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=4.596;DB;DP=123;Dels=0.01;FS=9.419;HaplotypeScore=3.7327;MLEAC=1;MLEAF=0.125;MQ=34.84;MQ0=0;MQRankSum=-0.408;QD=15.30;ReadPosRankSum=-0.888;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/0:27,0:27:63:0,63,685 0/1:14,15:29:99:495,0,268 0/0:37,0:37:57:0,57,629 0/0:29,0:29:69:0,69,787 +chr13 52004374 . A T 89.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.062;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.1357;MLEAC=1;MLEAF=0.125;MQ=37.97;MQ0=0;MQRankSum=-1.916;QD=1.05;ReadPosRankSum=0.729;SB=25.32 GT:AD:DP:GQ:PL 0/1:43,5:48:99:122,0,382 0/0:36,1:37:27:0,27,269 0/1:34,1:37:4:4,0,223 0/0:19,0:19:15:0,15,169 +chr13 52330578 . C T 70.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.236;DP=104;Dels=0.02;FS=10.680;HaplotypeScore=15.5390;MLEAC=2;MLEAF=0.250;MQ=28.06;MQ0=0;MQRankSum=1.433;QD=1.44;ReadPosRankSum=1.433;SB=-2.427e+00 GT:AD:DP:GQ:PL 0/1:24,4:28:84:84,0,390 0/0:26,0:26:27:0,27,275 0/0:27,1:28:5:0,5,363 0/1:18,2:20:27:27,0,224 +chr13 52603896 rs17402034 G A 827.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.082;DB;DP=280;Dels=0.00;FS=5.241;HaplotypeScore=6.2999;MLEAC=3;MLEAF=0.375;MQ=22.08;MQ0=0;MQRankSum=1.590;QD=4.29;ReadPosRankSum=2.914;SB=-3.790e+02 GT:AD:DP:GQ:PL 0/1:44,21:65:99:414,0,567 0/0:87,0:87:99:0,159,1653 0/1:53,18:72:99:173,0,763 0/1:35,20:56:99:284,0,299 +chr13 52803678 . A C 179.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.099;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=22.77;MQ0=0;MQRankSum=3.398;QD=3.90;ReadPosRankSum=0.215;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:44:44,0,75 0/1:14,3:17:57:57,0,62 0/1:7,4:11:56:101,0,56 0/1:5,1:6:20:20,0,35 +chr13 53624642 . C G 61.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.117;DP=101;Dels=0.00;FS=9.890;HaplotypeScore=9.3777;MLEAC=2;MLEAF=0.250;MQ=28.69;MQ0=0;MQRankSum=-1.394;QD=1.37;ReadPosRankSum=2.298;SB=0.269 GT:AD:DP:GQ:PL 0/0:21,1:22:33:0,33,372 0/0:33,1:34:28:0,28,512 0/1:28,4:32:70:70,0,301 0/1:10,2:12:33:33,0,129 +chr13 55015402 . C T 116.27 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.877;DP=86;Dels=0.01;FS=23.635;HaplotypeScore=4.3867;MLEAC=3;MLEAF=0.500;MQ=15.92;MQ0=0;MQRankSum=-0.474;QD=1.82;ReadPosRankSum=-0.095;SB=-1.737e+00 GT:AD:DP:GQ:PL 0/1:14,5:20:28:28,0,57 0/1:11,8:19:54:86,0,54 0/1:18,6:24:41:41,0,58 ./. +chr13 56573623 . A C 230.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.934;DP=47;Dels=0.02;FS=42.744;HaplotypeScore=2.5290;MLEAC=4;MLEAF=0.500;MQ=30.29;MQ0=0;MQRankSum=-0.960;QD=4.91;ReadPosRankSum=-0.014;SB=-1.762e+00 GT:AD:DP:GQ:PL 0/1:6,1:7:12:12,0,203 0/1:12,4:16:85:85,0,189 0/1:10,3:13:69:69,0,260 0/1:6,4:10:99:107,0,113 +chr13 58207406 . C T 160.78 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.457;DP=133;Dels=0.04;FS=45.620;HaplotypeScore=8.1465;MLEAC=3;MLEAF=0.375;MQ=35.29;MQ0=0;MQRankSum=-3.954;QD=1.67;ReadPosRankSum=0.648;SB=-3.204e+00 GT:AD:DP:GQ:PL 0/1:23,3:26:1:1,0,616 0/1:25,5:30:50:50,0,576 0/0:34,2:36:8:0,8,763 0/1:29,7:36:99:149,0,645 +chr13 60590307 rs12429010 C T 925.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.903;DB;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5903;MLEAC=4;MLEAF=0.500;MQ=35.69;MQ0=0;MQRankSum=-1.966;QD=21.52;ReadPosRankSum=1.996;SB=-1.175e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:51:0,51,635 1/1:1,17:19:51:638,51,0 0/1:10,8:18:99:255,0,354 0/1:3,3:6:81:81,0,104 +chr13 60849330 rs4989538 C G 180.82 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.011;DB;DP=85;Dels=0.00;FS=1.028;HaplotypeScore=0.7443;MLEAC=4;MLEAF=0.500;MQ=21.86;MQ0=0;MQRankSum=-4.964;QD=2.26;ReadPosRankSum=0.023;SB=-9.256e+01 GT:AD:DP:GQ:PL 0/1:11,15:26:70:70,0,204 0/1:14,17:32:72:72,0,246 1/1:5,17:22:6:82,6,0 0/0:1,4:5:3:0,3,23 +chr13 61985904 . C G 37.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.682;DP=122;Dels=0.01;FS=37.267;HaplotypeScore=7.5569;MLEAC=2;MLEAF=0.250;MQ=32.59;MQ0=0;MQRankSum=-1.945;QD=0.72;ReadPosRankSum=2.169;SB=0.194 GT:AD:DP:GQ:PL 0/1:29,4:33:46:46,0,624 0/0:32,2:34:16:0,16,729 0/0:34,1:35:44:0,44,778 0/1:17,2:19:33:33,0,294 +chr13 62334287 rs9539295 C T 1036.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.338;DB;DP=137;Dels=0.00;FS=2.636;HaplotypeScore=3.0502;MLEAC=4;MLEAF=0.500;MQ=30.97;MQ0=0;MQRankSum=0.382;QD=7.57;ReadPosRankSum=0.127;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,6:37:90:90,0,676 0/1:20,18:38:99:532,0,333 0/1:34,17:51:99:412,0,852 0/1:9,2:11:45:45,0,171 +chr13 65532178 rs9540279 C T 478.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.180;DB;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.4154;MLEAC=3;MLEAF=0.375;MQ=31.10;MQ0=0;MQRankSum=-0.429;QD=5.38;ReadPosRankSum=0.449;SB=-1.202e-02 GT:AD:DP:GQ:PL 0/1:15,12:27:99:308,0,459 0/0:31,0:31:78:0,78,897 0/1:21,8:29:99:172,0,563 0/1:27,5:33:42:42,0,735 +chr13 65532602 rs9598889 G A 109.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.175;DB;DP=114;Dels=0.00;FS=3.232;HaplotypeScore=1.2061;MLEAC=2;MLEAF=0.250;MQ=22.81;MQ0=0;MQRankSum=-0.802;QD=2.18;ReadPosRankSum=0.981;SB=-6.105e+01 GT:AD:DP:GQ:PL 0/1:15,9:24:15:15,0,229 0/1:12,14:26:99:135,0,155 0/0:32,0:32:30:0,30,351 0/0:32,0:32:45:0,45,448 +chr13 70681305 rs9564649 G A 275.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.603;DB;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.6400;MLEAC=1;MLEAF=0.125;MQ=34.00;MQ0=0;MQRankSum=0.850;QD=8.12;ReadPosRankSum=0.101;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,0:34:93:0,93,1157 0/1:22,10:34:99:312,0,490 0/0:37,0:37:87:0,87,1110 0/0:31,0:31:69:0,69,815 +chr13 72131160 . T A 51.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.556;DP=170;Dels=0.00;FS=72.381;HaplotypeScore=3.1729;MLEAC=1;MLEAF=0.125;MQ=34.43;MQ0=0;MQRankSum=-0.947;QD=1.24;ReadPosRankSum=0.130;SB=-5.092e+00 GT:AD:DP:GQ:PL 0/1:36,6:42:88:88,0,690 0/0:44,2:46:41:0,41,1159 0/0:50,2:53:65:0,65,1263 0/0:29,0:29:69:0,69,852 +chr13 75868928 . A T 30.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.482;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.1619;MLEAC=3;MLEAF=0.375;MQ=35.89;MQ0=0;MQRankSum=-0.035;QD=1.18;ReadPosRankSum=0.459;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,1:21:8:8,0,335 0/0:17,1:18:1:0,1,390 0/0:23,1:24:12:0,12,445 1/1:3,2:5:6:64,6,0 +chr13 76382028 . A G 267.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.572;DP=231;Dels=0.03;FS=69.821;HaplotypeScore=37.8079;MLEAC=4;MLEAF=0.500;MQ=24.50;MQ0=0;MQRankSum=-2.815;QD=1.16;ReadPosRankSum=4.765;SB=-9.741e-03 GT:AD:DP:GQ:PL 0/1:51,8:63:99:101,0,728 0/1:52,8:60:99:110,0,645 0/1:52,8:60:52:52,0,491 0/1:35,6:41:47:47,0,224 +chr13 76445045 . A C 128.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.309;DP=261;Dels=0.00;FS=109.123;HaplotypeScore=3.3630;MLEAC=2;MLEAF=0.250;MQ=36.91;MQ0=0;MQRankSum=-2.728;QD=0.93;ReadPosRankSum=1.388;SB=-1.197e+00 GT:AD:DP:GQ:PL 0/0:63,4:67:19:0,19,1633 0/0:53,3:56:12:0,12,1159 0/1:75,8:84:94:94,0,1829 0/1:49,5:54:76:76,0,995 +chr13 76447791 . A C 159.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.813;DP=97;Dels=0.01;FS=7.548;HaplotypeScore=22.6681;MLEAC=4;MLEAF=0.500;MQ=26.96;MQ0=0;MQRankSum=0.492;QD=1.64;ReadPosRankSum=1.615;SB=-5.022e-01 GT:AD:DP:GQ:PL 0/1:22,1:23:7:7,0,212 0/1:24,2:27:43:43,0,100 0/1:24,4:28:61:61,0,159 0/1:13,4:18:90:90,0,95 +chr13 77581324 . G T 38.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.630;DP=202;Dels=0.00;FS=39.673;HaplotypeScore=8.4358;MLEAC=1;MLEAF=0.125;MQ=39.31;MQ0=0;MQRankSum=-3.630;QD=2.05;ReadPosRankSum=-0.882;SB=-5.285e+00 GT:AD:DP:GQ:PL 0/0:62,1:63:99:0,129,2116 0/0:53,2:55:71:0,71,1672 0/0:63,1:64:99:0,143,2137 0/1:14,5:19:75:75,0,420 +chr13 77661582 . T A 45.29 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.248;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.8007;MLEAC=2;MLEAF=0.333;MQ=28.35;MQ0=0;MQRankSum=0.573;QD=2.52;ReadPosRankSum=0.573;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:9,2:11:14:50,0,14 0/1:5,1:7:29:33,0,29 0/0:4,0:4:6:0,6,53 +chr13 77699437 . A T 140.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.406;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.4534;MLEAC=3;MLEAF=0.375;MQ=33.71;MQ0=0;MQRankSum=-2.541;QD=0.95;ReadPosRankSum=1.505;SB=0.088 GT:AD:DP:GQ:PL 0/1:48,4:52:46:46,0,950 0/0:61,2:63:20:0,20,864 0/1:52,4:57:18:18,0,675 0/1:34,6:40:99:120,0,437 +chr13 77725117 . T A 71.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.476;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=10.1273;MLEAC=3;MLEAF=0.375;MQ=24.95;MQ0=0;MQRankSum=-1.115;QD=1.50;ReadPosRankSum=2.409;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,1:25:39:0,39,407 0/1:21,4:25:54:54,0,413 0/1:14,3:17:39:39,0,212 0/1:5,1:6:17:22,0,17 +chr13 78167676 . A T 63.40 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.103;DP=73;Dels=0.01;FS=17.889;HaplotypeScore=13.9003;MLEAC=3;MLEAF=0.500;MQ=22.81;MQ0=0;MQRankSum=1.834;QD=0.95;ReadPosRankSum=1.422;SB=9.409e-03 GT:AD:DP:GQ:PL 0/1:14,2:16:46:46,0,56 0/1:25,2:28:41:41,0,82 0/1:19,2:22:15:15,0,99 ./. +chr13 78293620 rs79933150 C T 414.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.975;DB;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.5068;MLEAC=1;MLEAF=0.125;MQ=36.32;MQ0=0;MQRankSum=-1.291;QD=11.86;ReadPosRankSum=0.280;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,14:35:99:451,0,431 0/0:38,0:38:99:0,102,1342 0/0:39,0:39:99:0,102,1309 0/0:24,0:24:45:0,45,569 +chr13 79190890 . G C 93.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.583;DP=97;Dels=0.00;FS=2.305;HaplotypeScore=2.6287;MLEAC=2;MLEAF=0.250;MQ=37.80;MQ0=0;MQRankSum=-2.737;QD=1.64;ReadPosRankSum=-1.340;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:27,4:31:61:61,0,813 0/0:30,1:31:39:0,39,870 0/1:22,4:26:74:74,0,690 0/0:9,0:9:15:0,15,192 +chr13 79216417 . C T 38.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.251;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.2254;MLEAC=3;MLEAF=0.375;MQ=31.04;MQ0=0;MQRankSum=-1.219;QD=0.86;ReadPosRankSum=1.702;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:29:29,0,217 0/0:24,0:24:63:0,63,722 0/1:20,2:22:4:4,0,558 0/1:5,2:7:47:47,0,120 +chr13 79425415 rs73243106 A G 49.30 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.030;DB;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.6154;MLEAC=1;MLEAF=0.125;MQ=31.44;MQ0=0;MQRankSum=0.458;QD=3.52;ReadPosRankSum=0.630;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:30:0,30,413 0/1:10,3:14:85:85,0,115 0/0:11,0:11:24:0,24,287 0/0:3,0:3:6:0,6,66 +chr13 94197647 . T G 266.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.936;DP=154;Dels=0.01;FS=78.830;HaplotypeScore=7.9299;MLEAC=4;MLEAF=0.500;MQ=34.55;MQ0=0;MQRankSum=-3.736;QD=2.52;ReadPosRankSum=2.968;SB=-2.127e+00 GT:AD:DP:GQ:PL 0/1:35,5:40:65:65,0,757 0/1:43,8:51:99:165,0,959 0/0:44,4:48:1:0,1,1054 0/1:9,4:13:53:77,0,53 +chr13 95112253 . G C 43.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.458;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=1.5783;MLEAC=2;MLEAF=0.250;MQ=35.02;MQ0=0;MQRankSum=-2.150;QD=1.22;ReadPosRankSum=-0.871;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,1:22:24:0,24,555 0/0:25,0:25:57:0,57,681 0/1:19,2:21:16:16,0,456 0/1:11,3:14:69:69,0,132 +chr13 95271472 . T A 110.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.726;DP=198;Dels=0.00;FS=71.631;HaplotypeScore=6.0941;MLEAC=4;MLEAF=0.500;MQ=34.05;MQ0=0;MQRankSum=-4.811;QD=0.63;ReadPosRankSum=1.568;SB=-2.121e+00 GT:AD:DP:GQ:PL 0/1:57,7:65:42:42,0,1207 0/1:50,6:56:49:49,0,1090 0/1:50,6:56:60:60,0,933 0/0:20,1:21:1:0,1,416 +chr13 95364286 . G T 41.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.506;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.5675;MLEAC=3;MLEAF=0.375;MQ=24.40;MQ0=0;MQRankSum=0.075;QD=1.02;ReadPosRankSum=1.807;SB=3.98 GT:AD:DP:GQ:PL 0/0:10,0:10:9:0,9,83 0/1:11,4:15:42:42,0,71 0/1:9,2:11:35:35,0,120 0/1:13,1:15:6:6,0,132 +chr13 95696619 . A C 295.09 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.424;DP=70;Dels=0.00;FS=96.843;HaplotypeScore=4.6844;MLEAC=3;MLEAF=0.375;MQ=28.69;MQ0=0;MQRankSum=-3.266;QD=4.68;ReadPosRankSum=1.593;SB=-2.121e+00 GT:AD:DP:GQ:PL 0/1:15,3:18:1:1,0,253 0/1:14,6:21:85:85,0,273 0/1:12,12:24:99:248,0,292 0/0:6,1:7:6:0,6,71 +chr13 95714976 rs57270423 C T 5239.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.898;DB;DP=156;Dels=0.04;FS=2.278;HaplotypeScore=2.1902;MLEAC=8;MLEAF=1.00;MQ=34.54;MQ0=0;MQRankSum=-0.788;QD=33.58;ReadPosRankSum=2.952;SB=-2.486e+03 GT:AD:DP:GQ:PL 1/1:1,35:36:99:1294,105,0 1/1:2,50:52:99:1807,147,0 1/1:2,43:45:69:1553,69,0 1/1:0,16:16:48:585,48,0 +chr13 95859974 rs2274408 T C 512.57 . AC=6;AF=1.00;AN=6;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=31.09;MQ0=0;QD=32.04;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:12:147,12,0 1/1:0,8:8:24:285,24,0 1/1:0,3:3:9:118,9,0 ./. +chr13 95861981 rs1678403 C G 84 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.358;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=1.8227;MLEAC=4;MLEAF=0.667;MQ=30.54;MQ0=0;MQRankSum=0.358;QD=21.00;ReadPosRankSum=-0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:82,6,0 0/0:1,0:2:3:0,3,43 ./. 1/1:1,1:2:3:41,3,0 +chr13 95863008 rs11568658 C A 211.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.095;DB;DP=64;Dels=0.00;FS=4.855;HaplotypeScore=3.7103;MLEAC=3;MLEAF=0.375;MQ=33.06;MQ0=0;MQRankSum=-0.535;QD=4.51;ReadPosRankSum=-0.073;SB=-1.287e-02 GT:AD:DP:GQ:PL 0/0:17,0:17:48:0,48,574 0/1:14,2:16:33:33,0,340 0/1:12,6:18:99:170,0,303 0/1:10,2:13:52:52,0,112 +chr13 96513187 rs34859372 T C 440.20 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.159;DB;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.9166;MLEAC=4;MLEAF=0.500;MQ=33.84;MQ0=0;MQRankSum=-1.061;QD=9.17;ReadPosRankSum=1.112;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,6:22:99:170,0,312 0/0:21,0:21:60:0,60,797 0/1:16,8:24:99:238,0,363 1/1:0,2:2:6:78,6,0 +chr13 96638651 rs12863903 C T 862.08 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.645;DB;DP=80;Dels=0.00;FS=3.180;HaplotypeScore=1.3649;MLEAC=4;MLEAF=0.500;MQ=33.20;MQ0=0;MQRankSum=0.651;QD=15.67;ReadPosRankSum=-0.026;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/0:25,0:25:75:0,75,921 0/1:12,7:19:99:202,0,338 0/1:13,18:31:99:593,0,305 1/1:2,3:5:9:114,9,0 +chr13 97999261 . G C 70.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.172;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.2308;MLEAC=2;MLEAF=0.250;MQ=32.36;MQ0=0;MQRankSum=-1.026;QD=1.86;ReadPosRankSum=-2.506;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,1:18:11:0,11,471 0/1:14,4:18:85:85,0,269 0/1:18,2:20:27:27,0,435 0/0:11,0:12:18:0,18,201 +chr13 98019036 rs7333641 C T 154.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.815;DB;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=0.5773;MLEAC=1;MLEAF=0.125;MQ=39.87;MQ0=0;MQRankSum=-1.937;QD=9.63;ReadPosRankSum=2.181;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:99:190,0,331 0/0:13,0:13:39:0,39,523 0/0:17,0:17:45:0,45,637 0/0:4,0:4:12:0,12,144 +chr13 98668037 . T C 62.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.194;DP=51;Dels=0.00;FS=57.540;HaplotypeScore=3.3730;MLEAC=3;MLEAF=0.375;MQ=34.61;MQ0=0;MQRankSum=-1.687;QD=1.70;ReadPosRankSum=-1.030;SB=2.34 GT:AD:DP:GQ:PL 0/1:14,3:17:52:52,0,450 0/1:12,2:14:38:38,0,348 0/0:14,0:14:27:0,27,382 0/1:5,1:6:16:16,0,165 +chr13 99091492 . G C 230.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.318;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.1261;MLEAC=4;MLEAF=0.500;MQ=24.18;MQ0=0;MQRankSum=2.463;QD=5.36;ReadPosRankSum=-1.050;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:35:86,0,35 0/1:11,3:14:62:62,0,159 0/1:8,3:11:67:67,0,75 0/1:9,2:11:18:58,0,18 +chr13 99092288 . T C 129.09 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.980;DP=228;Dels=0.00;FS=47.446;HaplotypeScore=6.8772;MLEAC=1;MLEAF=0.125;MQ=32.19;MQ0=0;MQRankSum=-4.480;QD=2.81;ReadPosRankSum=-0.901;SB=-5.520e+00 GT:AD:DP:GQ:PL 0/0:56,1:57:99:0,124,1711 0/0:51,5:56:11:0,11,1303 0/0:67,2:69:99:0,116,2000 0/1:34,12:46:99:165,0,896 +chr13 99098882 rs2281766 A C 1378.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.525;DB;DP=48;Dels=0.00;FS=6.042;HaplotypeScore=1.3900;MLEAC=8;MLEAF=1.00;MQ=29.58;MQ0=0;MQRankSum=2.844;QD=28.73;ReadPosRankSum=1.251;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:4,8:12:24:272,24,0 1/1:1,10:11:30:361,30,0 1/1:0,15:15:42:495,42,0 1/1:1,9:10:27:290,27,0 +chr13 99515286 . A G 900.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.180;DP=313;Dels=0.00;FS=75.879;HaplotypeScore=7.8630;MLEAC=4;MLEAF=0.500;MQ=20.15;MQ0=0;MQRankSum=6.635;QD=2.88;ReadPosRankSum=2.016;SB=-3.020e+00 GT:AD:DP:GQ:PL 0/1:66,15:81:99:381,0,128 0/1:73,4:77:39:39,0,384 0/1:93,8:101:99:173,0,518 0/1:42,12:54:99:350,0,189 +chr13 100207871 . A C 152.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.215;DP=133;Dels=0.02;FS=29.478;HaplotypeScore=7.2478;MLEAC=4;MLEAF=0.500;MQ=35.23;MQ0=0;MQRankSum=-2.431;QD=1.15;ReadPosRankSum=1.892;SB=-9.776e-01 GT:AD:DP:GQ:PL 0/1:34,3:37:13:13,0,744 0/1:26,3:29:23:23,0,721 0/1:41,10:51:99:153,0,990 0/1:12,1:13:5:5,0,198 +chr13 100635093 . A G 471.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.575;DP=255;Dels=0.00;FS=99.051;HaplotypeScore=2.9517;MLEAC=4;MLEAF=0.500;MQ=31.28;MQ0=0;MQRankSum=2.689;QD=1.85;ReadPosRankSum=-1.448;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:58,5:63:83:83,0,1078 0/1:55,7:62:99:127,0,1367 0/1:57,9:66:99:189,0,1193 0/1:55,7:63:99:115,0,1172 +chr13 100962110 . A T 131.43 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.073;DP=136;Dels=0.00;FS=16.994;HaplotypeScore=8.1979;MLEAC=3;MLEAF=0.375;MQ=35.57;MQ0=0;MQRankSum=-3.737;QD=1.22;ReadPosRankSum=1.540;SB=1.80 GT:AD:DP:GQ:PL 0/0:26,2:28:11:0,11,544 0/1:32,3:35:14:14,0,795 0/1:50,6:56:40:40,0,1187 0/1:12,5:17:99:120,0,190 +chr13 101997762 . G C 144.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.796;DP=112;Dels=0.04;FS=2.386;HaplotypeScore=22.3265;MLEAC=4;MLEAF=0.500;MQ=20.49;MQ0=0;MQRankSum=1.981;QD=1.72;ReadPosRankSum=-2.351;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,4:26:18:114,0,18 0/0:25,1:26:9:0,9,84 1/1:29,2:32:3:33,3,0 0/1:22,2:24:41:41,0,71 +chr13 102047624 . A T 196.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.460;DP=288;Dels=0.00;FS=78.633;HaplotypeScore=4.4337;MLEAC=3;MLEAF=0.375;MQ=37.13;MQ0=0;MQRankSum=-5.417;QD=0.99;ReadPosRankSum=0.152;SB=0.096 GT:AD:DP:GQ:PL 0/1:55,9:64:99:122,0,1515 0/0:81,9:90:10:0,10,2568 0/1:68,12:80:99:102,0,2005 0/1:50,4:54:15:15,0,1251 +chr13 103303639 . G C 46.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.117;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.2825;MLEAC=2;MLEAF=0.250;MQ=32.63;MQ0=0;MQRankSum=0.430;QD=1.50;ReadPosRankSum=2.984;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,2:20:36:36,0,158 0/0:25,0:25:48:0,48,547 0/0:29,0:29:51:0,51,638 0/1:9,2:11:52:52,0,117 +chr13 103321211 rs587250 A G 66.29 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.271;DB;DP=16;Dels=0.00;FS=2.963;HaplotypeScore=0.5639;MLEAC=4;MLEAF=0.667;MQ=25.13;MQ0=0;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-0.978;SB=-1.916e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:33:55,0,33 0/1:5,2:7:23:23,0,76 ./. 1/1:1,1:2:3:27,3,0 +chr13 103328619 rs584710 C A 99.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.990;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=28.14;MQ0=0;MQRankSum=-1.439;QD=4.76;ReadPosRankSum=0.765;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:23:23,0,50 0/1:7,5:12:63:63,0,221 0/0:5,0:5:6:0,6,74 0/1:1,2:3:26:56,0,26 +chr13 103524714 . C T 427.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.983;DP=140;Dels=0.01;FS=27.707;HaplotypeScore=1.6330;MLEAC=4;MLEAF=0.500;MQ=39.03;MQ0=0;MQRankSum=-2.050;QD=3.05;ReadPosRankSum=0.111;SB=-4.449e-01 GT:AD:DP:GQ:PL 0/1:30,7:37:99:144,0,729 0/1:33,3:36:9:9,0,881 0/1:28,6:34:99:117,0,660 0/1:25,7:32:99:199,0,385 +chr13 103718357 . G T 285.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.665;DP=240;Dels=0.01;FS=167.334;HaplotypeScore=23.9463;MLEAC=3;MLEAF=0.375;MQ=32.39;MQ0=0;MQRankSum=-3.257;QD=1.61;ReadPosRankSum=2.300;SB=1.01 GT:AD:DP:GQ:PL 0/1:49,6:55:77:77,0,977 0/0:57,2:62:48:0,48,1180 0/1:52,11:63:99:152,0,1157 0/1:49,8:58:99:100,0,1087 +chr13 107862841 rs3751448 T C 2564.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.091;DB;DP=103;Dels=0.00;FS=13.088;HaplotypeScore=1.2200;MLEAC=7;MLEAF=0.875;MQ=33.16;MQ0=0;MQRankSum=-3.027;QD=24.90;ReadPosRankSum=0.657;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,10:30:99:228,0,653 1/1:3,26:29:78:958,78,0 1/1:0,24:24:66:773,66,0 1/1:1,19:20:54:650,54,0 +chr13 109496928 rs7989802 C T 1925.59 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.461;DB;DP=83;Dels=0.00;FS=13.327;HaplotypeScore=1.6379;MLEAC=7;MLEAF=0.875;MQ=30.99;MQ0=0;MQRankSum=0.190;QD=23.20;ReadPosRankSum=-0.043;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,8:24:99:220,0,393 1/1:4,26:30:75:877,75,0 1/1:3,20:23:57:660,57,0 1/1:0,6:6:18:213,18,0 +chr13 109540782 . G A 175.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.142;DP=116;Dels=0.02;FS=154.491;HaplotypeScore=13.0275;MLEAC=3;MLEAF=0.375;MQ=29.35;MQ0=0;MQRankSum=-1.307;QD=2.10;ReadPosRankSum=0.711;SB=-1.135e+00 GT:AD:DP:GQ:PL 0/0:30,2:32:14:0,14,666 0/1:23,6:29:40:40,0,465 0/1:26,6:32:77:77,0,608 0/1:17,4:21:99:102,0,253 +chr13 109793720 rs7986595 A C 826.48 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.119;DB;DP=29;Dels=0.03;FS=17.993;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=32.96;MQ0=0;MQRankSum=2.593;QD=28.50;ReadPosRankSum=0.755;SB=3.69 GT:AD:DP:GQ:PL 0/1:1,8:9:9:243,0,9 1/1:2,7:9:21:280,21,0 1/1:0,3:3:9:121,9,0 1/1:1,6:7:18:225,18,0 +chr13 110813523 rs2275842 C T 957.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.744;DB;DP=120;Dels=0.00;FS=9.891;HaplotypeScore=1.3780;MLEAC=3;MLEAF=0.375;MQ=34.83;MQ0=0;MQRankSum=-2.706;QD=11.54;ReadPosRankSum=0.218;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:37,0:37:93:0,93,1259 0/1:20,7:27:99:201,0,466 0/1:16,15:31:99:482,0,369 0/1:13,12:25:99:318,0,252 +chr13 110827574 rs874203 T A 1125.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.036;DB;DP=116;Dels=0.00;FS=2.504;HaplotypeScore=2.4270;MLEAC=5;MLEAF=0.625;MQ=34.62;MQ0=0;MQRankSum=-3.863;QD=9.70;ReadPosRankSum=1.612;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:66:763,66,0 0/1:19,11:30:99:248,0,557 0/1:33,7:40:81:81,0,1065 0/1:19,4:23:79:79,0,467 +chr13 111099122 rs7326449 G A 5248.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.750;DB;DP=189;Dels=0.01;FS=9.804;HaplotypeScore=2.9076;MLEAC=8;MLEAF=1.00;MQ=33.66;MQ0=0;MQRankSum=-0.140;QD=27.77;ReadPosRankSum=4.023;SB=-6.071e+02 GT:AD:DP:GQ:PL 1/1:3,52:55:99:1582,104,0 1/1:6,33:39:13:1098,13,0 1/1:5,42:47:69:1286,69,0 1/1:4,42:46:64:1282,64,0 +chr13 111290844 . G C 102.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.040;DP=88;Dels=0.00;FS=57.139;HaplotypeScore=7.2228;MLEAC=4;MLEAF=0.500;MQ=24.75;MQ0=0;MQRankSum=0.564;QD=1.38;ReadPosRankSum=1.284;SB=-2.360e+00 GT:AD:DP:GQ:PL 0/0:13,1:14:1:0,1,219 0/1:18,3:21:60:60,0,215 0/1:24,3:27:10:10,0,322 0/1:21,5:26:72:72,0,73 +chr13 112278488 . T C 320.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.096;DP=166;Dels=0.00;FS=32.779;HaplotypeScore=2.0541;MLEAC=4;MLEAF=0.500;MQ=33.38;MQ0=0;MQRankSum=-1.997;QD=1.93;ReadPosRankSum=1.404;SB=-4.002e-02 GT:AD:DP:GQ:PL 0/1:36,7:43:99:133,0,773 0/1:38,7:45:99:114,0,907 0/1:35,3:38:21:21,0,715 0/1:34,6:40:95:95,0,856 +chr13 113200213 . C A 134.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.449;DP=106;Dels=0.05;FS=5.338;HaplotypeScore=11.9204;MLEAC=4;MLEAF=0.500;MQ=20.17;MQ0=0;MQRankSum=-0.102;QD=1.27;ReadPosRankSum=2.646;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:17,5:22:20:20,0,47 0/1:22,7:29:61:84,0,61 0/1:20,8:28:52:52,0,130 0/1:20,2:22:21:21,0,27 +chr13 113474302 . C A 91.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.903;DP=45;Dels=0.00;FS=2.594;HaplotypeScore=14.1451;MLEAC=3;MLEAF=0.375;MQ=23.99;MQ0=0;MQRankSum=0.483;QD=2.78;ReadPosRankSum=1.995;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,1:12:21:0,21,209 0/1:9,2:11:40:40,0,91 0/1:8,3:11:51:57,0,51 0/1:9,2:11:38:38,0,46 +chr13 113487073 rs145913126 AC A 891.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.796;DB;DP=125;FS=0.000;HaplotypeScore=24.1934;MLEAC=3;MLEAF=0.375;MQ=32.26;MQ0=0;MQRankSum=-0.004;QD=9.19;RPA=8,7;RU=C;ReadPosRankSum=-0.549;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:27,0:28:75:0,75,811 0/1:22,9:26:99:246,0,266 0/1:20,12:32:99:287,0,452 0/1:18,14:31:99:411,0,248 +chr13 113527967 rs1320525 G A 547.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.189;DB;DP=82;Dels=0.00;FS=2.082;HaplotypeScore=0.7479;MLEAC=3;MLEAF=0.375;MQ=35.88;MQ0=0;MQRankSum=-2.781;QD=8.98;ReadPosRankSum=1.335;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:14,10:24:99:279,0,474 0/0:21,0:21:60:0,60,772 0/1:15,4:19:59:59,0,550 0/1:9,9:18:99:253,0,220 +chr13 113708717 . C CG 436.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.330;DP=112;FS=6.226;HaplotypeScore=79.4254;MLEAC=4;MLEAF=0.500;MQ=23.97;MQ0=0;MQRankSum=-2.734;QD=3.90;ReadPosRankSum=1.177;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:18,10:20:98:98,0,400 0/1:17,7:14:99:140,0,268 0/1:24,9:23:99:186,0,442 0/1:14,4:10:64:64,0,233 +chr13 113742606 . G T 565.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.456;DP=193;Dels=0.00;FS=30.797;HaplotypeScore=0.7307;MLEAC=4;MLEAF=0.500;MQ=37.73;MQ0=0;MQRankSum=-1.789;QD=2.93;ReadPosRankSum=-1.947;SB=-3.591e-01 GT:AD:DP:GQ:PL 0/1:40,12:52:99:295,0,1065 0/1:38,9:47:99:166,0,1118 0/1:50,4:54:10:10,0,1371 0/1:33,7:40:99:137,0,962 +chr13 113824782 . A C 394.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.367;DP=160;Dels=0.01;FS=158.570;HaplotypeScore=1.2281;MLEAC=4;MLEAF=0.500;MQ=36.61;MQ0=0;MQRankSum=-2.442;QD=2.47;ReadPosRankSum=2.566;SB=-1.095e-02 GT:AD:DP:GQ:PL 0/1:32,5:37:79:79,0,761 0/1:37,9:46:99:184,0,989 0/1:46,7:53:85:85,0,1341 0/1:19,4:23:89:89,0,377 +chr13 113883865 . T G 108.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.200;DP=60;Dels=0.00;FS=4.491;HaplotypeScore=1.6368;MLEAC=2;MLEAF=0.250;MQ=29.78;MQ0=0;MQRankSum=0.919;QD=3.20;ReadPosRankSum=0.520;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:15:0,15,174 0/1:17,3:20:61:61,0,163 0/0:15,1:16:15:0,15,178 0/1:11,3:14:62:89,0,62 +chr13 113889355 rs2287249 A G 171.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.168;DB;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.2447;MLEAC=1;MLEAF=0.125;MQ=38.08;MQ0=0;MQRankSum=-1.927;QD=6.88;ReadPosRankSum=1.256;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,117,1595 0/1:17,8:25:99:208,0,395 0/0:38,0:38:99:0,111,1494 0/0:24,0:24:66:0,66,880 +chr13 113979918 . GC G 180.39 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.627;DP=41;FS=5.229;HaplotypeScore=19.1968;MLEAC=4;MLEAF=0.500;MQ=16.72;MQ0=0;MQRankSum=-1.625;QD=6.01;ReadPosRankSum=0.193;SB=-1.328e+00 GT:AD:DP:GQ:PL 0/1:4,3:6:39:90,0,39 0/1:8,3:3:31:68,0,31 1/1:8,2:6:6:76,6,0 0/0:9,1:4:7:0,7,45 +chr13 114204084 . C T 366.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.758;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=1.2081;MLEAC=4;MLEAF=0.500;MQ=33.91;MQ0=0;MQRankSum=-1.950;QD=5.39;ReadPosRankSum=4.285;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,6:20:99:156,0,154 0/1:14,3:17:64:64,0,235 0/1:15,4:19:91:91,0,200 0/1:7,4:11:98:98,0,120 +chr13 114312354 rs9285616 T G 31.77 . AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.00;FS=6.021;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=20.14;MQ0=0;QD=15.89;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:0,2:2:6:63,6,0 +chr13 114787028 . C A 36.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.534;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1769;MLEAC=1;MLEAF=0.125;MQ=27.16;MQ0=0;MQRankSum=-1.335;QD=1.81;ReadPosRankSum=-1.454;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,1:17:15:0,15,397 0/0:7,0:7:12:0,12,130 0/1:16,4:20:72:72,0,254 0/0:7,0:7:15:0,15,146 +chr14 19443424 . A G 30.02 . AC=4;AF=1.00;AN=4;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.4973;MLEAC=4;MLEAF=1.00;MQ=16.65;MQ0=0;QD=7.50;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:32,3,0 ./. 1/1:0,1:2:3:31,3,0 ./. +chr14 19574243 . C A 161.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.661;DP=40;Dels=0.00;FS=16.995;HaplotypeScore=1.9434;MLEAC=3;MLEAF=0.375;MQ=20.46;MQ0=0;MQRankSum=0.741;QD=4.26;ReadPosRankSum=-0.220;SB=-1.598e+01 GT:AD:DP:GQ:PL 0/1:10,4:14:76:87,0,76 0/1:7,4:11:64:70,0,64 0/1:9,4:13:15:46,0,15 0/0:1,1:2:3:0,3,36 +chr14 19684242 . A T 94.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.885;DP=42;Dels=0.02;FS=4.807;HaplotypeScore=1.4805;MLEAC=3;MLEAF=0.375;MQ=22.53;MQ0=0;MQRankSum=0.091;QD=3.39;ReadPosRankSum=1.189;SB=-1.730e+01 GT:AD:DP:GQ:PL 0/0:14,0:14:27:0,27,299 0/1:5,5:10:32:119,0,32 0/1:9,1:10:6:6,0,149 0/1:6,1:7:11:11,0,104 +chr14 20612273 . T C 45.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.224;DP=269;Dels=0.00;FS=38.490;HaplotypeScore=3.2724;MLEAC=1;MLEAF=0.125;MQ=23.07;MQ0=0;MQRankSum=2.454;QD=0.73;ReadPosRankSum=0.445;SB=-2.724e+00 GT:AD:DP:GQ:PL 0/0:64,1:65:69:0,69,659 0/0:65,1:66:40:0,40,774 0/0:73,1:74:67:0,67,923 0/1:59,4:63:82:82,0,593 +chr14 20815123 . G A 547.72 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.375;DP=84;Dels=0.01;FS=5.315;HaplotypeScore=10.5419;MLEAC=5;MLEAF=0.625;MQ=26.04;MQ0=0;MQRankSum=-0.527;QD=6.52;ReadPosRankSum=-0.424;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,10:21:54:202,0,54 0/1:18,8:26:24:108,0,24 0/1:12,9:21:49:117,0,49 1/1:6,9:15:18:166,18,0 +chr14 20836488 . T G 104.92 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.558;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=11.4562;MLEAC=2;MLEAF=0.333;MQ=22.67;MQ0=0;MQRankSum=3.166;QD=3.62;ReadPosRankSum=-1.960;SB=8.97 GT:AD:DP:GQ:PL 0/1:6,5:12:6:123,0,6 0/0:12,0:13:12:0,12,91 0/1:15,1:17:20:20,0,37 ./. +chr14 20841181 . C A 163.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.787;DP=107;Dels=0.02;FS=42.899;HaplotypeScore=20.3351;MLEAC=4;MLEAF=0.500;MQ=25.67;MQ0=0;MQRankSum=-1.458;QD=1.53;ReadPosRankSum=0.872;SB=-1.168e+01 GT:AD:DP:GQ:PL 0/1:20,6:26:99:130,0,320 0/1:21,1:23:5:5,0,184 0/1:26,5:31:38:38,0,323 0/1:21,4:25:32:32,0,264 +chr14 20841313 rs1713448 G A 405.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.293;DB;DP=251;Dels=0.00;FS=1.031;HaplotypeScore=6.1174;MLEAC=1;MLEAF=0.125;MQ=35.38;MQ0=0;MQRankSum=0.771;QD=7.25;ReadPosRankSum=2.408;SB=-2.000e+02 GT:AD:DP:GQ:PL 0/0:64,0:65:99:0,177,2215 0/1:41,15:56:99:442,0,1186 0/0:68,0:69:99:0,186,2310 0/0:61,0:61:99:0,168,2103 +chr14 20863874 . T G 31.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.810;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=0.250;MQ=26.75;MQ0=0;MQRankSum=-1.116;QD=0.94;ReadPosRankSum=1.816;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:26:26,0,217 0/0:10,1:11:12:0,12,145 0/0:8,0:9:15:0,15,174 0/1:13,3:16:47:47,0,56 +chr14 21161759 . C T 66.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.794;DP=181;Dels=0.01;FS=110.891;HaplotypeScore=5.2431;MLEAC=3;MLEAF=0.375;MQ=32.98;MQ0=0;MQRankSum=-2.545;QD=0.50;ReadPosRankSum=-1.133;SB=-2.754e+00 GT:AD:DP:GQ:PL 0/0:44,4:48:2:0,2,1138 0/1:40,4:45:11:11,0,1135 0/1:46,4:50:9:9,0,1117 0/1:30,6:36:86:86,0,760 +chr14 21215692 rs10136680 C T 1031.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.983;DB;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.3893;MLEAC=5;MLEAF=0.625;MQ=28.31;MQ0=0;MQRankSum=0.038;QD=10.75;ReadPosRankSum=0.968;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,8:25:99:212,0,410 1/1:2,22:24:45:505,45,0 0/1:18,9:27:99:162,0,497 0/1:12,8:20:99:198,0,253 +chr14 21387872 . C T 39.26 . AC=6;AF=1.00;AN=6;BaseQRankSum=-0.740;DP=33;Dels=0.03;FS=2.963;HaplotypeScore=5.5964;MLEAC=6;MLEAF=1.00;MQ=11.22;MQ0=0;MQRankSum=2.404;QD=1.57;ReadPosRankSum=-0.740;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,1:6:3:25,3,0 1/1:7,1:8:3:23,3,0 1/1:10,1:11:3:26,3,0 ./. +chr14 21464455 . G A 734.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.380;DP=216;Dels=0.00;FS=9.444;HaplotypeScore=14.6842;MLEAC=4;MLEAF=0.500;MQ=31.56;MQ0=0;MQRankSum=-3.297;QD=3.40;ReadPosRankSum=0.193;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:52,8:60:96:96,0,848 0/1:38,15:53:99:322,0,744 0/1:53,10:63:99:123,0,973 0/1:29,10:39:99:236,0,549 +chr14 21486054 rs74784175 T C 741.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.500;DB;DP=131;Dels=0.00;FS=6.405;HaplotypeScore=6.5975;MLEAC=3;MLEAF=0.375;MQ=35.39;MQ0=0;MQRankSum=-0.602;QD=7.73;ReadPosRankSum=-0.794;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,102,1298 0/1:20,13:33:78:431,0,78 0/1:26,8:34:99:219,0,684 0/1:23,6:29:99:135,0,667 +chr14 21511459 . C T 59.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.838;DP=174;Dels=0.04;FS=3.990;HaplotypeScore=69.3648;MLEAC=3;MLEAF=0.375;MQ=14.67;MQ0=0;MQRankSum=0.915;QD=0.50;ReadPosRankSum=2.066;SB=-2.181e+01 GT:AD:DP:GQ:PL 0/1:34,5:40:36:36,0,72 0/1:31,2:37:34:34,0,39 0/0:43,4:50:21:0,21,170 0/1:34,4:40:33:33,0,62 +chr14 21526044 rs12435011 T C 755.35 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.296;DB;DP=58;Dels=0.03;FS=0.000;HaplotypeScore=1.2430;MLEAC=7;MLEAF=0.875;MQ=23.76;MQ0=0;MQRankSum=2.436;QD=13.02;ReadPosRankSum=1.209;SB=-2.697e+01 GT:AD:DP:GQ:PL 1/1:2,10:12:18:183,18,0 0/1:8,10:18:13:184,0,13 1/1:3,8:11:18:223,18,0 1/1:6,9:15:21:209,21,0 +chr14 21541229 . T A 268.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.567;DP=161;Dels=0.00;FS=79.083;HaplotypeScore=2.3957;MLEAC=3;MLEAF=0.375;MQ=34.66;MQ0=0;MQRankSum=-4.413;QD=2.20;ReadPosRankSum=0.657;SB=0.851 GT:AD:DP:GQ:PL 0/1:31,6:37:87:87,0,782 0/1:38,7:45:82:82,0,1175 0/0:37,2:39:40:0,40,1076 0/1:31,9:40:99:143,0,844 +chr14 21559753 . T C 131.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.859;DP=50;Dels=0.02;FS=2.568;HaplotypeScore=3.2107;MLEAC=4;MLEAF=0.500;MQ=26.93;MQ0=0;MQRankSum=-1.210;QD=2.63;ReadPosRankSum=0.586;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:14:14,0,166 0/1:10,2:12:38:38,0,123 0/1:15,2:17:50:50,0,144 0/1:8,4:12:45:72,0,45 +chr14 21821587 . G T 422.09 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.839;DP=54;Dels=0.00;FS=3.823;HaplotypeScore=8.2949;MLEAC=5;MLEAF=0.625;MQ=24.96;MQ0=0;MQRankSum=0.463;QD=7.82;ReadPosRankSum=-0.040;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,8:16:50:148,0,50 0/1:10,5:15:67:67,0,89 0/1:9,6:15:84:133,0,84 1/1:3,5:8:12:119,12,0 +chr14 21822027 . A G 56.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.288;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6259;MLEAC=4;MLEAF=0.500;MQ=26.19;MQ0=0;MQRankSum=0.901;QD=0.95;ReadPosRankSum=-2.961;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:24:24,0,290 0/1:21,1:22:4:4,0,277 0/1:18,2:20:23:23,0,279 0/1:1,2:3:26:47,0,26 +chr14 21854169 . C T 119.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.686;DP=187;Dels=0.02;FS=174.383;HaplotypeScore=10.1464;MLEAC=3;MLEAF=0.375;MQ=35.50;MQ0=0;MQRankSum=-0.925;QD=0.88;ReadPosRankSum=-1.195;SB=-8.226e-01 GT:AD:DP:GQ:PL 0/1:38,7:45:99:111,0,1189 0/1:35,5:41:18:18,0,872 0/1:45,4:49:34:34,0,1064 0/0:46,2:48:20:0,20,1145 +chr14 21868805 . G T 331.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.339;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1796;MLEAC=3;MLEAF=0.375;MQ=27.32;MQ0=0;MQRankSum=1.889;QD=4.95;ReadPosRankSum=-0.178;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,5:22:99:107,0,110 0/1:17,7:24:99:191,0,147 0/0:22,1:23:4:0,4,208 0/1:17,4:21:75:75,0,132 +chr14 22038210 rs17792766 G T 3650.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.096;DB;DP=298;Dels=0.01;FS=0.960;HaplotypeScore=3.9498;MLEAC=4;MLEAF=0.500;MQ=34.22;MQ0=0;MQRankSum=-0.152;QD=12.25;ReadPosRankSum=2.728;SB=-1.373e+03 GT:AD:DP:GQ:PL 0/1:41,37:80:99:1217,0,962 0/1:40,20:64:99:606,0,1027 0/1:52,35:87:99:1023,0,1095 0/1:37,27:65:99:804,0,829 +chr14 22192069 . T A 97.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.237;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=25.5121;MLEAC=3;MLEAF=0.375;MQ=22.64;MQ0=0;MQRankSum=-0.728;QD=1.13;ReadPosRankSum=-1.074;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,4:34:34:34,0,315 0/1:22,5:27:29:29,0,124 0/0:31,3:34:15:0,15,409 0/1:21,5:26:78:78,0,90 +chr14 22309328 rs34295307 T C 45.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.122;DB;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.4881;MLEAC=1;MLEAF=0.125;MQ=27.59;MQ0=0;MQRankSum=0.306;QD=2.25;ReadPosRankSum=-0.131;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:81:81,0,330 0/0:16,0:17:30:0,30,355 0/0:19,0:19:42:0,42,459 0/0:7,0:7:18:0,18,205 +chr14 22310031 . A T 769.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.219;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=6.5738;MLEAC=4;MLEAF=0.500;MQ=27.16;MQ0=0;MQRankSum=1.321;QD=6.36;ReadPosRankSum=0.899;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,15:38:73:418,0,73 0/1:26,7:33:99:171,0,130 0/1:21,6:27:63:90,0,63 0/1:15,7:22:32:133,0,32 +chr14 22337407 . T C 163.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.675;DP=267;Dels=0.00;FS=113.057;HaplotypeScore=3.0528;MLEAC=2;MLEAF=0.250;MQ=32.32;MQ0=0;MQRankSum=-0.906;QD=1.17;ReadPosRankSum=1.839;SB=-9.803e-01 GT:AD:DP:GQ:PL 0/1:61,10:71:99:151,0,1486 0/1:62,7:69:54:54,0,1526 0/0:67,4:72:38:0,38,1653 0/0:52,3:55:58:0,58,1352 +chr14 23103355 rs3751484 C T 255.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.201;DB;DP=186;Dels=0.03;FS=99.378;HaplotypeScore=50.9939;MLEAC=3;MLEAF=0.375;MQ=26.91;MQ0=0;MQRankSum=-1.685;QD=1.97;ReadPosRankSum=1.794;SB=0.741 GT:AD:DP:GQ:PL 0/1:34,8:44:98:98,0,622 0/0:52,3:55:21:0,21,966 0/1:45,7:52:74:74,0,771 0/1:22,8:30:99:127,0,255 +chr14 23240871 . C T 58.27 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.468;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=10.1637;MLEAC=4;MLEAF=0.667;MQ=21.34;MQ0=0;MQRankSum=1.529;QD=1.24;ReadPosRankSum=-1.155;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:12,1:13:3:32,3,0 0/1:14,2:16:30:30,0,53 0/1:16,2:18:35:35,0,150 ./. +chr14 23354699 rs12891954 A G 148.01 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.133;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.5934;MLEAC=4;MLEAF=0.667;MQ=27.23;MQ0=0;MQRankSum=-0.365;QD=18.50;ReadPosRankSum=-0.741;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,2:3:36:36,0,37 1/1:1,4:5:12:153,12,0 ./. 0/0:2,0:2:3:0,3,42 +chr14 23465434 . A T 70.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.782;DP=152;Dels=0.01;FS=38.935;HaplotypeScore=10.3298;MLEAC=3;MLEAF=0.375;MQ=33.76;MQ0=0;MQRankSum=-2.454;QD=0.58;ReadPosRankSum=2.763;SB=-7.717e-02 GT:AD:DP:GQ:PL 0/1:36,5:42:30:30,0,996 0/1:36,3:41:11:11,0,651 0/1:33,5:38:72:72,0,742 0/0:27,2:29:9:0,9,636 +chr14 23503999 . C G 70.09 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.848;DP=82;Dels=0.00;FS=26.910;HaplotypeScore=4.1684;MLEAC=3;MLEAF=0.375;MQ=29.51;MQ0=0;MQRankSum=1.600;QD=1.19;ReadPosRankSum=-1.455;SB=2.01 GT:AD:DP:GQ:PL 0/1:16,2:18:33:33,0,247 0/1:17,4:21:66:66,0,304 0/0:22,1:23:21:0,21,441 0/1:19,1:20:14:14,0,202 +chr14 23530280 . G C 55.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.491;DP=83;Dels=0.00;FS=17.936;HaplotypeScore=8.3046;MLEAC=2;MLEAF=0.250;MQ=33.47;MQ0=0;MQRankSum=-3.741;QD=1.36;ReadPosRankSum=0.706;SB=-2.082e+00 GT:AD:DP:GQ:PL 0/0:17,3:20:25:0,25,550 0/1:22,4:26:33:33,0,564 0/0:20,2:22:4:0,4,678 0/1:10,5:15:63:63,0,209 +chr14 23548177 rs113611108 T A 324.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.302;DB;DP=95;Dels=0.00;FS=28.637;HaplotypeScore=2.3361;MLEAC=4;MLEAF=0.500;MQ=32.97;MQ0=0;MQRankSum=-0.921;QD=3.42;ReadPosRankSum=2.532;SB=-1.774e-01 GT:AD:DP:GQ:PL 0/1:17,6:24:99:156,0,186 0/1:20,5:27:84:84,0,219 0/1:20,1:21:12:12,0,253 0/1:18,5:23:99:115,0,314 +chr14 23564450 . C A 221.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.397;DP=158;Dels=0.01;FS=101.128;HaplotypeScore=6.1089;MLEAC=4;MLEAF=0.500;MQ=33.98;MQ0=0;MQRankSum=-4.007;QD=1.40;ReadPosRankSum=0.228;SB=-1.760e-02 GT:AD:DP:GQ:PL 0/1:24,8:32:99:132,0,695 0/1:38,6:44:28:28,0,987 0/1:36,5:41:50:50,0,971 0/1:35,5:40:54:54,0,908 +chr14 23586803 . G C 96.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.777;DP=86;Dels=0.01;FS=18.085;HaplotypeScore=8.4551;MLEAC=2;MLEAF=0.250;MQ=31.34;MQ0=0;MQRankSum=-1.991;QD=2.20;ReadPosRankSum=2.371;SB=0.576 GT:AD:DP:GQ:PL 0/0:16,0:16:27:0,27,339 0/1:14,2:16:31:31,0,191 0/0:25,1:26:19:0,19,470 0/1:22,5:27:99:107,0,299 +chr14 23598952 rs7157021 A G 774.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=4.439;DB;DP=389;Dels=0.00;FS=0.746;HaplotypeScore=4.1409;MLEAC=1;MLEAF=0.125;MQ=37.95;MQ0=0;MQRankSum=-0.857;QD=8.33;ReadPosRankSum=2.559;SB=-3.790e+02 GT:AD:DP:GQ:PL 0/1:66,27:93:99:811,0,2219 0/0:94,0:94:99:0,259,3390 0/0:109,0:109:99:0,292,3782 0/0:92,0:92:99:0,238,2995 +chr14 23727915 . T G 48.29 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.932;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=8.6423;MLEAC=2;MLEAF=0.333;MQ=17.67;MQ0=0;MQRankSum=0.634;QD=1.93;ReadPosRankSum=0.037;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:22:50,0,22 0/1:13,3:16:15:36,0,15 0/0:13,0:13:6:0,6,52 ./. +chr14 23733725 rs3811180 C T 37.17 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.753;DB;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.2259;MLEAC=1;MLEAF=0.125;MQ=34.78;MQ0=0;MQRankSum=1.052;QD=7.43;ReadPosRankSum=1.753;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:21:0,21,283 0/1:3,2:5:73:73,0,73 0/0:9,0:9:21:0,21,249 0/0:4,0:4:9:0,9,127 +chr14 23851876 . C A 73.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.372;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.5424;MLEAC=3;MLEAF=0.375;MQ=25.75;MQ0=0;MQRankSum=1.775;QD=1.32;ReadPosRankSum=1.032;SB=0.029 GT:AD:DP:GQ:PL 0/1:20,2:22:41:41,0,214 0/0:15,0:15:21:0,21,198 0/1:16,1:17:24:24,0,100 0/1:14,3:17:13:52,0,13 +chr14 23863648 . C G 40.08 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.550;DP=17;Dels=0.00;FS=6.008;HaplotypeScore=1.5712;MLEAC=3;MLEAF=0.750;MQ=16.03;MQ0=0;MQRankSum=1.754;QD=4.45;ReadPosRankSum=1.300;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:2,1:3:19:19,0,21 1/1:4,2:6:6:57,6,0 ./. +chr14 23874098 . C G 97.39 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.488;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.6804;MLEAC=2;MLEAF=0.250;MQ=34.61;MQ0=0;MQRankSum=-4.345;QD=1.55;ReadPosRankSum=1.725;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,8:38:99:104,0,877 0/1:21,4:25:34:34,0,583 0/0:34,1:35:57:0,57,1035 0/0:23,3:26:5:0,5,617 +chr14 23884318 . C G 116.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.678;DP=152;Dels=0.01;FS=26.774;HaplotypeScore=1.6091;MLEAC=3;MLEAF=0.375;MQ=13.87;MQ0=0;MQRankSum=1.735;QD=1.00;ReadPosRankSum=-2.519;SB=0.520 GT:AD:DP:GQ:PL 0/1:28,5:33:67:85,0,67 0/1:40,3:43:40:40,0,107 0/1:35,4:39:34:34,0,170 0/0:35,1:36:9:0,9,97 +chr14 23994134 . T G 62.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.872;DP=73;Dels=0.00;FS=26.241;HaplotypeScore=1.0499;MLEAC=3;MLEAF=0.375;MQ=31.97;MQ0=0;MQRankSum=-1.756;QD=1.23;ReadPosRankSum=-1.309;SB=-6.559e-02 GT:AD:DP:GQ:PL 0/1:19,2:21:20:20,0,409 0/1:11,3:14:28:28,0,245 0/0:22,0:22:57:0,57,674 0/1:13,3:16:58:58,0,230 +chr14 24026556 . T C 39.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.333;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=2.9315;MLEAC=2;MLEAF=0.250;MQ=26.82;MQ0=0;MQRankSum=-0.495;QD=2.30;ReadPosRankSum=1.344;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,68 1/1:4,1:5:3:23,3,0 0/1:8,3:11:58:58,0,69 0/0:3,0:3:9:0,9,86 +chr14 24435513 . A G 237.92 . AC=6;AF=1.00;AN=6;BaseQRankSum=-3.475;DP=120;Dels=0.00;FS=56.505;HaplotypeScore=2.6495;MLEAC=6;MLEAF=1.00;MQ=13.05;MQ0=0;MQRankSum=4.670;QD=2.38;ReadPosRankSum=-3.566;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:27,3:30:9:87,9,0 1/1:30,4:35:9:103,9,0 1/1:32,3:35:9:85,9,0 ./. +chr14 24517420 . A T 123.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.187;DP=125;Dels=0.00;FS=27.684;HaplotypeScore=4.1673;MLEAC=3;MLEAF=0.375;MQ=22.81;MQ0=0;MQRankSum=4.020;QD=1.25;ReadPosRankSum=-1.579;SB=0.143 GT:AD:DP:GQ:PL 0/0:26,0:26:15:0,15,183 0/1:30,3:33:60:60,0,258 0/1:35,2:37:37:37,0,196 0/1:26,3:29:70:70,0,269 +chr14 24608619 . G C 32.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.111;DP=155;Dels=0.00;FS=37.392;HaplotypeScore=0.9889;MLEAC=1;MLEAF=0.125;MQ=36.50;MQ0=0;MQRankSum=-0.489;QD=0.73;ReadPosRankSum=-1.404;SB=-4.096e+00 GT:AD:DP:GQ:PL 0/0:35,1:36:52:0,52,1052 0/0:36,2:38:15:0,15,974 0/0:36,1:37:60:0,60,1091 0/1:39,5:44:68:68,0,890 +chr14 24610139 . C A 85.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.420;DP=104;Dels=0.00;FS=73.547;HaplotypeScore=5.6960;MLEAC=3;MLEAF=0.375;MQ=33.11;MQ0=0;MQRankSum=-3.567;QD=1.09;ReadPosRankSum=-0.975;SB=0.015 GT:AD:DP:GQ:PL 0/0:25,1:26:60:0,60,750 0/1:19,3:22:10:10,0,533 0/1:27,5:32:50:50,0,686 0/1:19,5:24:68:68,0,451 +chr14 24621032 . C A 38.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.971;DP=57;Dels=0.02;FS=6.456;HaplotypeScore=10.7076;MLEAC=3;MLEAF=0.375;MQ=21.91;MQ0=0;MQRankSum=-1.289;QD=0.85;ReadPosRankSum=1.501;SB=7.11 GT:AD:DP:GQ:PL 0/0:10,1:12:6:0,6,63 0/1:7,4:12:36:36,0,77 0/1:12,2:15:29:29,0,88 0/1:14,3:17:15:15,0,74 +chr14 24659408 rs3052603 ACT A 604.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.696;DB;DP=70;FS=0.000;HaplotypeScore=22.3014;MLEAC=3;MLEAF=0.375;MQ=33.63;MQ0=0;MQRankSum=-2.396;QD=12.09;RPA=2,1;RU=CT;ReadPosRankSum=0.656;SB=-1.434e-03;STR GT:AD:DP:GQ:PL 0/0:20,0:17:51:0,51,747 0/1:11,3:11:99:119,0,276 0/1:16,8:22:99:375,0,454 0/1:8,4:11:99:163,0,247 +chr14 24710923 . C T 62.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.169;DP=48;Dels=0.02;FS=41.965;HaplotypeScore=6.9601;MLEAC=3;MLEAF=0.375;MQ=29.56;MQ0=0;MQRankSum=-2.160;QD=1.55;ReadPosRankSum=-0.101;SB=-3.306e-01 GT:AD:DP:GQ:PL 0/1:6,3:9:63:64,0,63 0/1:12,1:13:15:15,0,167 0/1:15,2:17:26:26,0,304 0/0:6,1:8:15:0,15,164 +chr14 24739043 rs2295314 G A 64.27 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.435;DB;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.3325;MLEAC=1;MLEAF=0.125;MQ=31.79;MQ0=0;MQRankSum=1.164;QD=10.71;ReadPosRankSum=-0.635;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,3:6:99:100,0,104 0/0:4,0:4:9:0,9,92 0/0:5,0:5:12:0,12,152 0/0:5,0:5:15:0,15,175 +chr14 24739092 . T A 34.11 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.752;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.6015;MLEAC=2;MLEAF=0.250;MQ=28.67;MQ0=0;MQRankSum=-2.177;QD=2.27;ReadPosRankSum=2.177;SB=0.319 GT:AD:DP:GQ:PL 0/1:6,2:8:29:29,0,135 0/0:5,0:6:12:0,12,159 0/0:9,0:9:9:0,9,94 0/1:4,2:7:46:46,0,48 +chr14 24769377 . A C 30.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.829;DP=186;Dels=0.00;FS=35.503;HaplotypeScore=5.1575;MLEAC=2;MLEAF=0.250;MQ=35.93;MQ0=0;MQRankSum=-3.027;QD=0.34;ReadPosRankSum=-1.763;SB=-2.539e+00 GT:AD:DP:GQ:PL 0/1:40,6:46:58:58,0,1040 0/1:39,4:44:13:13,0,1096 0/0:47,3:50:16:0,16,1263 0/0:46,0:46:99:0,108,1325 +chr14 24776401 rs1053649 C A 168.14 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.736;DB;DP=7;Dels=0.00;FS=7.782;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=35.58;MQ0=0;MQRankSum=0.736;QD=28.02;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:82,6,0 1/1:0,1:1:3:39,3,0 1/1:1,2:3:6:83,6,0 ./. +chr14 24776470 . G A 58.49 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.022;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=2.9680;MLEAC=4;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=-0.416;QD=1.22;ReadPosRankSum=-1.773;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:31:31,0,217 0/1:8,2:10:46:46,0,72 0/1:12,1:13:6:6,0,314 0/1:11,1:12:17:17,0,95 +chr14 24805463 rs3212254 G T 131.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.582;DB;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.6824;MLEAC=1;MLEAF=0.125;MQ=32.62;MQ0=0;MQRankSum=-1.209;QD=3.77;ReadPosRankSum=1.090;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:27,7:35:99:168,0,525 0/0:49,0:49:78:0,78,880 0/0:56,1:58:97:0,97,1205 0/0:44,0:44:69:0,69,753 +chr14 24884440 . T G 49.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.139;DP=68;Dels=0.00;FS=12.954;HaplotypeScore=3.6487;MLEAC=3;MLEAF=0.375;MQ=25.79;MQ0=0;MQRankSum=-0.697;QD=0.96;ReadPosRankSum=-0.857;SB=4.16 GT:AD:DP:GQ:PL 0/1:9,2:11:39:39,0,89 0/0:17,0:17:15:0,15,172 0/1:22,2:24:37:37,0,196 0/1:15,1:16:16:16,0,35 +chr14 24900151 . C T 122.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.362;DP=41;Dels=0.00;FS=5.487;HaplotypeScore=1.4714;MLEAC=4;MLEAF=0.500;MQ=31.11;MQ0=0;MQRankSum=-2.419;QD=2.98;ReadPosRankSum=0.508;SB=-2.699e-01 GT:AD:DP:GQ:PL 0/1:7,2:9:38:38,0,209 0/1:7,3:10:34:34,0,131 0/1:6,3:9:69:84,0,69 0/1:11,2:13:8:8,0,177 +chr14 24975290 . C G 143.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.255;DP=127;Dels=0.00;FS=53.204;HaplotypeScore=3.4602;MLEAC=3;MLEAF=0.375;MQ=34.42;MQ0=0;MQRankSum=-1.841;QD=1.40;ReadPosRankSum=-0.834;SB=-6.175e-01 GT:AD:DP:GQ:PL 0/0:23,2:25:5:0,5,588 0/1:25,5:30:86:86,0,522 0/1:37,4:41:35:35,0,1017 0/1:27,4:31:64:64,0,565 +chr14 31347073 rs2239580 C T 176.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.317;DB;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=34.46;MQ0=0;MQRankSum=-0.713;QD=14.67;ReadPosRankSum=1.268;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:18:0,18,231 0/1:3,6:9:99:197,0,101 0/1:2,1:3:19:19,0,61 0/0:1,0:1:3:0,3,31 +chr14 31388257 rs61745932 C G 509.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.860;DB;DP=204;Dels=0.00;FS=0.875;HaplotypeScore=2.2374;MLEAC=1;MLEAF=0.125;MQ=37.15;MQ0=0;MQRankSum=-2.581;QD=10.20;ReadPosRankSum=1.239;SB=-2.680e+02 GT:AD:DP:GQ:PL 0/1:30,20:50:99:546,0,911 0/0:64,0:64:99:0,186,2454 0/0:65,0:65:99:0,193,2442 0/0:24,0:25:72:0,72,963 +chr14 31424940 . C G 134.03 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.498;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=8.8468;MLEAC=3;MLEAF=0.375;MQ=25.98;MQ0=0;MQRankSum=-0.226;QD=3.94;ReadPosRankSum=0.407;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:12:65:65,0,73 0/1:9,4:13:36:82,0,36 0/0:18,1:19:15:0,15,196 1/1:8,1:9:3:31,3,0 +chr14 31535603 rs6571386 G C 3032 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.923;DB;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.2497;MLEAC=8;MLEAF=1.00;MQ=33.21;MQ0=0;MQRankSum=0.567;QD=33.32;ReadPosRankSum=2.345;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,23:24:66:805,66,0 1/1:0,22:22:60:754,60,0 1/1:0,28:28:81:996,81,0 1/1:2,15:17:18:516,18,0 +chr14 31542129 . G A 48.81 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.037;DP=58;Dels=0.03;FS=2.671;HaplotypeScore=10.9644;MLEAC=5;MLEAF=0.625;MQ=23.84;MQ0=0;MQRankSum=1.438;QD=0.84;ReadPosRankSum=1.290;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,1:14:17:32,0,17 0/1:14,2:16:17:17,0,24 0/1:17,2:19:15:15,0,40 1/1:6,1:7:3:27,3,0 +chr14 31554055 . C T 67.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.525;DP=161;Dels=0.00;FS=26.359;HaplotypeScore=6.1752;MLEAC=1;MLEAF=0.125;MQ=32.30;MQ0=0;MQRankSum=-3.808;QD=1.84;ReadPosRankSum=1.422;SB=-4.989e+00 GT:AD:DP:GQ:PL 0/0:42,0:42:72:0,72,845 0/0:35,2:37:30:0,30,818 0/0:44,1:45:59:0,59,958 0/1:29,8:37:99:104,0,548 +chr14 31778338 . A C 116.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.914;DP=273;Dels=0.00;FS=116.992;HaplotypeScore=4.6697;MLEAC=2;MLEAF=0.250;MQ=37.48;MQ0=0;MQRankSum=-1.412;QD=0.78;ReadPosRankSum=2.767;SB=-1.276e+00 GT:AD:DP:GQ:PL 0/1:63,5:68:30:30,0,1613 0/1:71,9:80:99:128,0,1808 0/0:71,4:75:70:0,70,1804 0/0:46,3:49:10:0,10,1291 +chr14 32560322 . G C 115.99 . AC=5;AF=0.625;AN=8;BaseQRankSum=-3.449;DP=108;Dels=0.02;FS=85.059;HaplotypeScore=2.4146;MLEAC=5;MLEAF=0.625;MQ=9.15;MQ0=0;MQRankSum=2.228;QD=1.61;ReadPosRankSum=2.999;SB=1.38 GT:AD:DP:GQ:PL 1/1:16,6:22:9:83,9,0 0/1:32,5:37:14:43,0,14 0/0:31,4:35:6:0,6,71 1/1:8,4:12:3:35,3,0 +chr14 34955221 . C A 53.31 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.892;DP=56;Dels=0.00;FS=8.028;HaplotypeScore=10.8197;MLEAC=3;MLEAF=0.500;MQ=13.02;MQ0=0;MQRankSum=1.538;QD=1.52;ReadPosRankSum=1.046;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,3:11:3:0,3,31 0/1:14,6:20:15:52,0,15 ./. 1/1:11,4:15:3:39,3,0 +chr14 34955352 rs4246987 A G 126.80 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.531;DB;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.8051;MLEAC=4;MLEAF=0.667;MQ=9.56;MQ0=0;MQRankSum=-0.129;QD=2.49;ReadPosRankSum=-1.078;SB=-8.456e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:101,12,0 ./. 0/1:20,6:26:34:46,0,34 0/1:14,3:17:21:21,0,26 +chr14 35732299 . T A 55.28 . AC=2;AF=0.500;AN=4;BaseQRankSum=-2.628;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.4894;MLEAC=2;MLEAF=0.500;MQ=14.16;MQ0=0;MQRankSum=2.469;QD=1.49;ReadPosRankSum=1.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,5:16:27:67,0,27 0/1:17,3:21:23:23,0,46 ./. ./. +chr14 35786407 . A T 32.76 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.700;DP=88;Dels=0.02;FS=2.682;HaplotypeScore=13.2759;MLEAC=3;MLEAF=0.750;MQ=18.11;MQ0=0;MQRankSum=0.900;QD=0.66;ReadPosRankSum=0.300;SB=48.48 GT:AD:DP:GQ:PL ./. 0/1:23,2:26:36:36,0,36 0/1:19,2:22:31:31,0,75 ./. +chr14 35898937 . A T 70.36 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.300;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.8782;MLEAC=5;MLEAF=0.833;MQ=27.34;MQ0=0;MQRankSum=0.550;QD=4.40;ReadPosRankSum=0.550;SB=3.98 GT:AD:DP:GQ:PL 1/1:2,1:3:3:33,3,0 1/1:5,2:7:6:45,6,0 0/1:4,1:6:20:31,0,20 ./. +chr14 36153029 . A C 80 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.087;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=2.3875;MLEAC=3;MLEAF=0.375;MQ=24.88;MQ0=0;MQRankSum=1.876;QD=5.33;ReadPosRankSum=-0.606;SB=0.730 GT:AD:DP:GQ:PL 0/1:8,2:10:35:35,0,72 0/0:11,0:11:9:0,9,106 0/0:14,0:14:12:0,12,107 1/1:2,3:5:9:91,9,0 +chr14 36350256 . G T 66.58 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.035;DP=70;Dels=0.00;FS=8.327;HaplotypeScore=4.7335;MLEAC=3;MLEAF=0.375;MQ=27.95;MQ0=0;MQRankSum=1.835;QD=1.26;ReadPosRankSum=-1.094;SB=0.375 GT:AD:DP:GQ:PL 0/1:16,1:17:16:16,0,139 0/1:15,1:16:24:24,0,76 0/0:17,0:17:9:0,9,110 0/1:17,3:20:69:69,0,155 +chr14 36777460 . C T 123.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.024;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=1.7206;MLEAC=3;MLEAF=0.375;MQ=31.39;MQ0=0;MQRankSum=-3.413;QD=1.63;ReadPosRankSum=3.316;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,4:29:21:21,0,654 0/0:26,3:29:29:0,29,688 0/1:24,6:32:96:96,0,514 0/1:11,3:14:50:50,0,235 +chr14 37132559 . G A 110 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.740;DP=78;Dels=0.01;FS=23.424;HaplotypeScore=14.3078;MLEAC=3;MLEAF=0.375;MQ=26.39;MQ0=0;MQRankSum=0.563;QD=1.80;ReadPosRankSum=-1.203;SB=0.826 GT:AD:DP:GQ:PL 0/1:14,3:17:74:74,0,198 0/1:19,4:23:71:71,0,325 0/1:17,3:21:7:7,0,403 0/0:16,0:16:18:0,18,211 +chr14 44975441 . T G 95.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.203;DP=135;Dels=0.00;FS=38.339;HaplotypeScore=3.6829;MLEAC=3;MLEAF=0.375;MQ=32.12;MQ0=0;MQRankSum=1.487;QD=1.02;ReadPosRankSum=-0.378;SB=0.365 GT:AD:DP:GQ:PL 0/1:28,3:31:13:13,0,604 0/0:40,2:42:17:0,17,800 0/1:34,3:37:35:35,0,613 0/1:20,5:25:90:90,0,383 +chr14 45329952 . T C 349.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.839;DP=99;Dels=0.01;FS=127.090;HaplotypeScore=7.7595;MLEAC=4;MLEAF=0.500;MQ=21.84;MQ0=0;MQRankSum=3.525;QD=3.53;ReadPosRankSum=2.338;SB=1.61 GT:AD:DP:GQ:PL 0/1:18,4:22:91:91,0,152 0/1:31,9:41:99:161,0,234 0/1:21,6:28:90:90,0,150 0/1:5,2:7:39:50,0,39 +chr14 45414264 . C G 66.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.032;DP=149;Dels=0.00;FS=67.040;HaplotypeScore=14.3097;MLEAC=3;MLEAF=0.375;MQ=31.03;MQ0=0;MQRankSum=-4.264;QD=0.61;ReadPosRankSum=-0.567;SB=0.429 GT:AD:DP:GQ:PL 0/1:36,4:40:39:39,0,733 0/1:39,4:43:13:13,0,737 0/0:38,2:40:54:0,54,875 0/1:19,7:26:57:57,0,460 +chr14 45473247 . C A 50.44 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.050;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=1.0709;MLEAC=4;MLEAF=0.500;MQ=28.06;MQ0=0;MQRankSum=-1.050;QD=1.29;ReadPosRankSum=0.834;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:6:6,0,147 0/1:11,2:13:25:25,0,179 0/1:5,2:7:35:35,0,122 0/1:2,1:3:26:26,0,26 +chr14 45473531 . T A 35.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.498;DP=87;Dels=0.00;FS=4.907;HaplotypeScore=1.9151;MLEAC=2;MLEAF=0.250;MQ=34.34;MQ0=0;MQRankSum=-0.336;QD=0.69;ReadPosRankSum=-1.354;SB=-1.910e-02 GT:AD:DP:GQ:PL 0/1:20,3:23:60:60,0,329 0/1:24,2:28:16:16,0,355 0/0:29,0:29:63:0,63,801 0/0:7,0:7:12:0,12,146 +chr14 45605172 . C G 50.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.633;DP=70;Dels=0.00;FS=2.471;HaplotypeScore=6.9353;MLEAC=3;MLEAF=0.375;MQ=34.64;MQ0=0;MQRankSum=-0.061;QD=1.08;ReadPosRankSum=0.102;SB=-1.223e-01 GT:AD:DP:GQ:PL 0/1:14,1:16:16:16,0,171 0/1:13,2:15:53:53,0,222 0/0:23,0:23:42:0,42,515 0/1:15,1:16:25:25,0,99 +chr14 47315127 rs1388567 G A 89.29 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.776;DB;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.6419;MLEAC=1;MLEAF=0.125;MQ=34.67;MQ0=0;MQRankSum=-2.201;QD=5.58;ReadPosRankSum=1.378;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:36:0,36,468 0/1:11,5:16:99:125,0,298 0/0:20,0:20:57:0,57,736 0/0:2,0:2:6:0,6,71 +chr14 48687389 . A C 45.01 . AC=4;AF=1.00;AN=4;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=39.12;MQ0=0;QD=22.50;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:39,3,0 1/1:0,1:1:3:39,3,0 ./. +chr14 50101393 . C G 30.14 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.959;DP=41;Dels=0.00;FS=5.579;HaplotypeScore=3.8704;MLEAC=3;MLEAF=0.375;MQ=28.06;MQ0=0;MQRankSum=0.391;QD=1.59;ReadPosRankSum=-0.746;SB=21.85 GT:AD:DP:GQ:PL 1/1:2,3:5:6:63,6,0 0/0:12,0:13:15:0,15,182 0/1:13,1:14:11:11,0,160 0/0:9,0:9:12:0,12,118 +chr14 50195688 . T G 74.31 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.444;DP=151;Dels=0.00;FS=77.342;HaplotypeScore=0.6422;MLEAC=3;MLEAF=0.375;MQ=38.44;MQ0=0;MQRankSum=-3.147;QD=0.69;ReadPosRankSum=-0.483;SB=0.255 GT:AD:DP:GQ:PL 0/1:29,3:32:27:27,0,853 0/1:33,3:36:13:13,0,1085 0/0:41,3:44:14:0,14,1172 0/1:34,5:39:77:77,0,1012 +chr14 50201336 . A C 196.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.665;DP=115;Dels=0.00;FS=96.584;HaplotypeScore=0.9945;MLEAC=3;MLEAF=0.375;MQ=37.75;MQ0=0;MQRankSum=-3.888;QD=1.82;ReadPosRankSum=0.821;SB=21.49 GT:AD:DP:GQ:PL 0/1:29,7:36:99:122,0,787 0/1:30,6:36:99:112,0,786 0/1:33,3:36:2:2,0,933 0/0:6,0:7:6:0,6,84 +chr14 50246951 . C A 50.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.634;DP=110;Dels=0.00;FS=62.080;HaplotypeScore=1.6370;MLEAC=2;MLEAF=0.250;MQ=39.24;MQ0=0;MQRankSum=-0.702;QD=1.18;ReadPosRankSum=-1.152;SB=-2.848e+00 GT:AD:DP:GQ:PL 0/1:28,4:32:44:44,0,816 0/0:29,1:30:55:0,55,1037 0/0:37,0:37:93:0,93,1179 0/1:9,2:11:48:48,0,180 +chr14 50298981 . C A 50.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.837;DP=110;Dels=0.02;FS=0.000;HaplotypeScore=2.4311;MLEAC=2;MLEAF=0.250;MQ=31.90;MQ0=0;MQRankSum=-1.980;QD=0.79;ReadPosRankSum=0.833;SB=7.65 GT:AD:DP:GQ:PL 0/1:24,5:30:82:82,0,410 0/0:38,0:38:48:0,48,525 0/1:29,3:32:8:8,0,497 0/0:7,0:8:12:0,12,152 +chr14 50300310 rs3100904 A G 1349.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.078;DB;DP=39;Dels=0.00;FS=9.890;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=35.21;MQ0=0;MQRankSum=3.217;QD=34.59;ReadPosRankSum=-0.718;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:33:441,33,0 1/1:1,12:13:36:486,36,0 1/1:0,8:8:24:315,24,0 1/1:3,4:7:12:146,12,0 +chr14 50360716 . G C 85.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.411;DP=77;Dels=0.00;FS=41.362;HaplotypeScore=2.8702;MLEAC=3;MLEAF=0.375;MQ=22.94;MQ0=0;MQRankSum=1.517;QD=1.40;ReadPosRankSum=-0.359;SB=-2.322e+00 GT:AD:DP:GQ:PL 0/1:19,4:23:73:73,0,120 0/0:16,0:16:21:0,21,234 0/1:21,3:24:48:48,0,196 0/1:12,2:14:6:6,0,220 +chr14 50597534 . T G 47.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.529;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.4950;MLEAC=3;MLEAF=0.375;MQ=29.11;MQ0=0;MQRankSum=-0.529;QD=3.00;ReadPosRankSum=0.135;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:16:22,0,16 0/1:3,1:4:27:27,0,27 0/1:4,2:7:40:40,0,48 0/0:1,1:2:3:0,3,32 +chr14 50616746 . A G 233.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.987;DP=91;Dels=0.00;FS=48.228;HaplotypeScore=8.4227;MLEAC=4;MLEAF=0.500;MQ=28.17;MQ0=0;MQRankSum=-3.582;QD=2.57;ReadPosRankSum=2.127;SB=-1.218e-02 GT:AD:DP:GQ:PL 0/1:16,8:24:99:112,0,307 0/1:25,6:31:40:40,0,467 0/1:21,6:28:57:57,0,162 0/1:5,3:8:40:67,0,40 +chr14 50714001 . A G 347.42 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.581;DP=37;Dels=0.00;FS=9.560;HaplotypeScore=6.3016;MLEAC=6;MLEAF=0.750;MQ=26.77;MQ0=0;MQRankSum=2.614;QD=9.39;ReadPosRankSum=0.613;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,4:9:41:91,0,41 1/1:9,4:13:12:116,12,0 0/1:6,6:12:14:158,0,14 1/1:2,1:3:3:26,3,0 +chr14 50792273 rs8003113 A G 1524.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.709;DB;DP=130;Dels=0.00;FS=3.011;HaplotypeScore=0.2447;MLEAC=4;MLEAF=0.500;MQ=33.37;MQ0=0;MQRankSum=-4.685;QD=11.73;ReadPosRankSum=1.587;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,14:42:99:358,0,949 0/1:18,23:41:99:653,0,475 0/1:20,14:34:99:403,0,516 0/1:7,5:12:99:153,0,155 +chr14 50802840 rs7148292 A G 2024.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.523;DB;DP=205;Dels=0.00;FS=1.975;HaplotypeScore=7.4645;MLEAC=4;MLEAF=0.500;MQ=38.56;MQ0=0;MQRankSum=-7.592;QD=9.88;ReadPosRankSum=1.468;SB=-2.100e+02 GT:AD:DP:GQ:PL 0/1:26,21:47:99:615,0,850 0/1:35,12:47:99:304,0,1088 0/1:41,21:62:99:631,0,1399 0/1:31,18:49:99:517,0,888 +chr14 50845231 rs7151046 C A 1353.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.116;DB;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9638;MLEAC=4;MLEAF=0.500;MQ=36.41;MQ0=0;MQRankSum=-0.908;QD=12.42;ReadPosRankSum=-0.537;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,15:28:99:447,0,430 0/1:23,11:34:99:312,0,587 0/1:15,11:26:99:367,0,453 0/1:13,8:21:99:270,0,376 +chr14 50863941 . A G 260.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.248;DP=162;Dels=0.00;FS=14.440;HaplotypeScore=9.9764;MLEAC=3;MLEAF=0.375;MQ=29.37;MQ0=0;MQRankSum=-0.101;QD=2.07;ReadPosRankSum=0.422;SB=-9.012e+00 GT:AD:DP:GQ:PL 0/0:36,0:36:57:0,57,557 0/1:43,6:49:87:87,0,558 0/1:30,7:39:99:144,0,410 0/1:34,4:38:73:73,0,325 +chr14 51410928 . A G 30.34 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.023;DP=51;Dels=0.00;FS=2.637;HaplotypeScore=1.8239;MLEAC=3;MLEAF=0.500;MQ=13.79;MQ0=0;MQRankSum=1.964;QD=1.17;ReadPosRankSum=-0.609;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:11,2:13:3:24,3,0 0/0:12,2:14:6:0,6,57 0/1:9,4:13:22:45,0,22 +chr14 52224005 rs9671290 G A 227.82 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.797;DB;DP=125;Dels=0.00;FS=13.760;HaplotypeScore=2.6758;MLEAC=7;MLEAF=0.875;MQ=11.48;MQ0=0;MQRankSum=2.761;QD=1.82;ReadPosRankSum=-0.928;SB=-8.823e+01 GT:AD:DP:GQ:PL 0/1:37,2:39:27:27,0,119 1/1:21,7:28:9:84,9,0 1/1:24,8:33:6:50,6,0 1/1:19,5:25:12:110,12,0 +chr14 52509131 rs2273433 G A 3441.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.759;DB;DP=137;Dels=0.00;FS=10.490;HaplotypeScore=1.5166;MLEAC=6;MLEAF=0.750;MQ=37.20;MQ0=0;MQRankSum=-3.969;QD=25.12;ReadPosRankSum=0.465;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,13:32:99:425,0,652 0/1:21,14:35:99:423,0,733 1/1:1,34:35:99:1306,99,0 1/1:1,34:35:99:1287,102,0 +chr14 52535648 rs3920038 G T 203.63 . AC=5;AF=0.625;AN=8;BaseQRankSum=-3.221;DB;DP=54;Dels=0.00;FS=5.253;HaplotypeScore=1.6727;MLEAC=5;MLEAF=0.625;MQ=26.67;MQ0=0;MQRankSum=-0.944;QD=3.77;ReadPosRankSum=1.356;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,6:7:12:126,12,0 0/1:12,2:14:1:1,0,224 0/1:14,5:19:85:85,0,343 0/1:12,2:14:35:35,0,139 +chr14 52735108 rs34968651 C T 615.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.985;DB;DP=64;Dels=0.02;FS=1.145;HaplotypeScore=2.9815;MLEAC=3;MLEAF=0.375;MQ=38.90;MQ0=0;MQRankSum=0.302;QD=13.68;ReadPosRankSum=0.429;SB=-1.520e+02 GT:AD:DP:GQ:PL 0/1:6,4:10:99:135,0,175 0/0:19,0:19:51:0,51,638 0/1:13,8:21:99:272,0,405 0/1:6,7:13:99:252,0,134 +chr14 52906081 rs2249922 T G 917.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.124;DB;DP=79;Dels=0.00;FS=3.983;HaplotypeScore=2.3691;MLEAC=4;MLEAF=0.500;MQ=32.55;MQ0=0;MQRankSum=-3.325;QD=16.68;ReadPosRankSum=-0.442;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:48:576,48,0 0/0:24,0:24:66:0,66,819 0/1:11,13:24:99:322,0,309 0/1:9,4:13:68:68,0,188 +chr14 53174981 rs2295827 C T 996.57 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.244;DB;DP=65;Dels=0.00;FS=3.080;HaplotypeScore=1.6860;MLEAC=4;MLEAF=0.500;MQ=33.36;MQ0=0;MQRankSum=-0.007;QD=19.54;ReadPosRankSum=0.158;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,17:20:32:601,32,0 0/0:14,0:14:42:0,42,532 0/1:12,10:22:99:313,0,278 0/1:5,4:9:99:131,0,139 +chr14 54418986 rs2761880 T C 2560.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.867;DB;DP=90;Dels=0.00;FS=14.420;HaplotypeScore=1.1621;MLEAC=8;MLEAF=1.00;MQ=30.40;MQ0=0;MQRankSum=1.818;QD=28.46;ReadPosRankSum=-0.500;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,22:25:60:731,60,0 1/1:3,19:22:51:586,51,0 1/1:2,18:20:51:575,51,0 1/1:2,21:23:63:708,63,0 +chr14 55169027 . T A 206.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.777;DP=202;Dels=0.02;FS=113.510;HaplotypeScore=6.1846;MLEAC=4;MLEAF=0.500;MQ=36.38;MQ0=0;MQRankSum=-3.210;QD=1.02;ReadPosRankSum=0.624;SB=-1.283e+00 GT:AD:DP:GQ:PL 0/1:43,8:51:99:133,0,1145 0/1:44,5:49:22:22,0,1159 0/1:50,6:56:4:4,0,1345 0/1:35,6:41:89:89,0,976 +chr14 55231171 . A C 860.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.378;DP=165;Dels=0.01;FS=77.231;HaplotypeScore=14.4013;MLEAC=4;MLEAF=0.500;MQ=24.50;MQ0=0;MQRankSum=-0.824;QD=5.22;ReadPosRankSum=2.790;SB=0.031 GT:AD:DP:GQ:PL 0/1:33,14:47:99:327,0,252 0/1:34,13:47:99:199,0,365 0/1:31,17:49:99:291,0,331 0/1:14,7:21:86:86,0,120 +chr14 55471833 . T A 69.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.143;DP=234;Dels=0.00;FS=36.443;HaplotypeScore=2.2612;MLEAC=4;MLEAF=0.500;MQ=19.50;MQ0=0;MQRankSum=3.737;QD=0.30;ReadPosRankSum=-2.722;SB=-1.024e+00 GT:AD:DP:GQ:PL 0/1:56,4:60:25:25,0,583 0/1:63,4:67:45:45,0,547 0/1:54,3:57:5:5,0,405 0/1:46,4:50:36:36,0,446 +chr14 55530098 . A T 80.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.652;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4083;MLEAC=1;MLEAF=0.125;MQ=30.45;MQ0=0;MQRankSum=0.069;QD=5.79;ReadPosRankSum=0.374;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:99:117,0,187 0/0:20,0:20:39:0,39,491 0/0:17,0:17:42:0,42,495 0/0:15,0:15:36:0,36,441 +chr14 55604255 . T G 206.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.155;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=1.2009;MLEAC=4;MLEAF=0.500;MQ=30.60;MQ0=0;MQRankSum=-0.031;QD=6.08;ReadPosRankSum=3.566;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,5:12:99:154,0,104 0/1:7,1:8:16:16,0,97 0/1:7,2:9:51:51,0,82 0/1:2,2:4:28:28,0,52 +chr14 55903651 . G A 95.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.047;DP=168;Dels=0.00;FS=8.258;HaplotypeScore=5.7227;MLEAC=2;MLEAF=0.250;MQ=33.41;MQ0=0;MQRankSum=-3.024;QD=1.33;ReadPosRankSum=0.412;SB=-1.700e+01 GT:AD:DP:GQ:PL 0/0:45,2:47:31:0,31,1006 0/1:36,5:41:56:56,0,755 0/0:47,1:49:69:0,69,1045 0/1:26,5:31:81:81,0,459 +chr14 56106779 . T A 55.33 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.939;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.7301;MLEAC=2;MLEAF=0.250;MQ=32.03;MQ0=0;MQRankSum=-1.052;QD=0.67;ReadPosRankSum=2.025;SB=17.91 GT:AD:DP:GQ:PL 0/1:37,3:40:51:51,0,395 0/0:35,1:36:20:0,20,421 0/1:39,3:42:45:45,0,501 0/0:8,0:9:6:0,6,73 +chr14 56433179 rs8005912 C A 84 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.727;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=40.71;MQ0=0;MQRankSum=0.727;QD=28.00;ReadPosRankSum=0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,43 1/1:0,1:1:3:38,3,0 ./. 1/1:0,2:2:6:85,6,0 +chr14 57445276 . G T 59.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.158;DP=98;Dels=0.02;FS=15.275;HaplotypeScore=10.7112;MLEAC=3;MLEAF=0.375;MQ=15.70;MQ0=0;MQRankSum=2.728;QD=0.73;ReadPosRankSum=0.848;SB=-1.106e+00 GT:AD:DP:GQ:PL 0/1:25,2:27:16:16,0,55 0/1:18,5:23:16:47,0,16 0/1:25,4:29:38:38,0,84 0/0:16,1:17:6:0,6,65 +chr14 57713352 . T G 181.47 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.172;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2994;MLEAC=2;MLEAF=0.333;MQ=25.91;MQ0=0;MQRankSum=2.006;QD=2.97;ReadPosRankSum=2.598;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,4:27:64:108,0,64 0/0:38,2:41:13:0,13,312 0/1:28,5:34:82:112,0,82 ./. +chr14 57736191 . T G 32.09 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.942;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9930;MLEAC=3;MLEAF=0.375;MQ=31.93;MQ0=0;MQRankSum=-3.187;QD=1.04;ReadPosRankSum=-0.294;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:12:21:21,0,269 0/1:8,3:11:38:38,0,136 0/0:10,1:11:18:0,18,233 0/1:6,1:8:16:16,0,102 +chr14 57747175 . C A 77.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.557;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.4833;MLEAC=2;MLEAF=0.250;MQ=34.11;MQ0=0;MQRankSum=-0.459;QD=1.85;ReadPosRankSum=0.927;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,4:33:65:65,0,700 0/0:23,1:24:16:0,16,591 0/0:24,0:24:54:0,54,672 0/1:7,2:9:54:54,0,122 +chr14 57857967 . G C 50.33 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.195;DP=40;Dels=0.00;FS=5.815;HaplotypeScore=12.1683;MLEAC=4;MLEAF=0.500;MQ=21.04;MQ0=0;MQRankSum=1.362;QD=1.57;ReadPosRankSum=-0.895;SB=-1.541e+00 GT:AD:DP:GQ:PL 0/1:5,1:6:19:19,0,19 0/0:8,0:8:6:0,6,66 0/1:11,2:13:46:51,0,46 1/1:9,3:13:3:23,3,0 +chr14 58471355 rs2295139 T C 1291.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.186;DB;DP=82;Dels=0.01;FS=8.278;HaplotypeScore=1.5197;MLEAC=5;MLEAF=0.625;MQ=32.25;MQ0=0;MQRankSum=-2.533;QD=15.75;ReadPosRankSum=0.298;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,20:22:57:660,57,0 0/1:18,14:32:99:310,0,480 0/1:10,9:19:99:248,0,254 0/1:4,4:8:99:119,0,134 +chr14 58605790 rs3829765 G A 3315.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.623;DB;DP=186;Dels=0.00;FS=3.427;HaplotypeScore=1.9836;MLEAC=5;MLEAF=0.625;MQ=34.92;MQ0=0;MQRankSum=-3.769;QD=17.82;ReadPosRankSum=2.654;SB=-1.643e+03 GT:AD:DP:GQ:PL 0/1:29,21:50:99:641,0,843 1/1:4,40:44:99:1404,114,0 0/1:26,29:55:99:926,0,764 0/1:24,13:37:99:344,0,814 +chr14 58608005 . T G 57.74 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.318;DP=75;Dels=0.00;FS=7.689;HaplotypeScore=4.7986;MLEAC=3;MLEAF=0.375;MQ=16.50;MQ0=0;MQRankSum=3.092;QD=0.96;ReadPosRankSum=-1.466;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,1:19:15:15,0,67 0/1:21,3:24:45:54,0,45 0/0:14,1:15:9:0,9,73 1/1:16,1:17:3:32,3,0 +chr14 58680377 . G T 47.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.012;DP=94;Dels=0.00;FS=14.419;HaplotypeScore=1.9091;MLEAC=2;MLEAF=0.250;MQ=35.56;MQ0=0;MQRankSum=-0.896;QD=1.40;ReadPosRankSum=-0.523;SB=-3.747e+00 GT:AD:DP:GQ:PL 0/0:29,0:29:57:0,57,727 0/1:23,2:25:22:22,0,553 0/0:31,0:31:54:0,54,690 0/1:7,2:9:33:67,0,33 +chr14 58869510 rs7153357 T C 7987.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.114;DB;DP=228;Dels=0.00;FS=47.285;HaplotypeScore=0.9957;MLEAC=8;MLEAF=1.00;MQ=33.65;MQ0=0;MQRankSum=2.009;QD=35.03;ReadPosRankSum=2.079;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,58:62:99:2101,140,0 1/1:1,73:74:99:2722,189,0 1/1:2,62:64:99:2261,153,0 1/1:3,25:28:75:903,75,0 +chr14 59789586 rs8021976 A G 3007.28 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.723;DB;DP=102;Dels=0.01;FS=37.542;HaplotypeScore=4.5758;MLEAC=8;MLEAF=1.00;MQ=34.12;MQ0=0;MQRankSum=2.724;QD=29.48;ReadPosRankSum=1.579;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,25:29:75:973,75,0 1/1:8,25:33:72:905,72,0 1/1:2,23:25:69:846,69,0 1/1:4,10:14:6:322,6,0 +chr14 59798473 rs2146012 C G 2307.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.191;DB;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.2467;MLEAC=5;MLEAF=0.625;MQ=35.60;MQ0=0;MQRankSum=-1.177;QD=16.48;ReadPosRankSum=1.826;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,30:38:90:1147,90,0 0/1:22,17:39:99:547,0,493 0/1:27,15:42:99:460,0,772 0/1:14,7:21:99:199,0,357 +chr14 60072060 . G C 33.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.947;DP=90;Dels=0.01;FS=7.064;HaplotypeScore=8.5017;MLEAC=3;MLEAF=0.375;MQ=29.82;MQ0=0;MQRankSum=-1.978;QD=0.50;ReadPosRankSum=3.186;SB=-7.432e-01 GT:AD:DP:GQ:PL 0/1:21,2:24:9:9,0,397 0/1:18,4:22:40:40,0,340 0/1:18,3:21:27:27,0,354 0/0:20,2:22:36:0,36,379 +chr14 60097104 . A T 31.67 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.329;DP=139;Dels=0.01;FS=2.248;HaplotypeScore=11.0960;MLEAC=3;MLEAF=0.375;MQ=32.75;MQ0=0;MQRankSum=-2.959;QD=0.30;ReadPosRankSum=-1.545;SB=-7.922e-01 GT:AD:DP:GQ:PL 0/0:33,2:35:46:0,46,881 0/1:29,4:33:59:59,0,664 0/1:37,3:40:7:7,0,963 0/1:27,2:30:6:6,0,560 +chr14 60426771 rs150683 T C 835.95 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.186;DB;DP=56;Dels=0.00;FS=4.168;HaplotypeScore=3.2221;MLEAC=6;MLEAF=0.750;MQ=31.67;MQ0=0;MQRankSum=-1.937;QD=14.93;ReadPosRankSum=0.733;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,4:10:75:75,0,155 0/1:16,9:25:99:270,0,385 1/1:1,10:12:30:368,30,0 1/1:3,6:9:15:169,15,0 +chr14 60451922 . T G 32.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.833;DP=92;Dels=0.00;FS=11.465;HaplotypeScore=0.9881;MLEAC=2;MLEAF=0.250;MQ=33.63;MQ0=0;MQRankSum=0.065;QD=1.05;ReadPosRankSum=1.755;SB=-2.497e+00 GT:AD:DP:GQ:PL 0/1:21,3:24:59:59,0,324 0/0:34,2:36:7:0,7,611 0/0:25,0:25:39:0,39,460 0/1:6,1:7:14:14,0,78 +chr14 61442468 . G A 96.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.874;DP=185;Dels=0.00;FS=50.013;HaplotypeScore=1.7294;MLEAC=1;MLEAF=0.125;MQ=36.14;MQ0=0;MQRankSum=-0.363;QD=1.67;ReadPosRankSum=0.613;SB=-3.753e+00 GT:AD:DP:GQ:PL 0/1:50,8:58:99:133,0,1206 0/0:44,1:45:53:0,53,1089 0/0:42,1:43:65:0,65,1112 0/0:39,0:39:93:0,93,1159 +chr14 62193402 . C A 94.90 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.731;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3262;MLEAC=3;MLEAF=0.500;MQ=21.55;MQ0=0;MQRankSum=-0.495;QD=2.56;ReadPosRankSum=2.899;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:52:69,0,52 0/1:8,2:10:8:8,0,112 0/1:13,3:16:56:56,0,86 ./. +chr14 62211517 . C G 76.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.501;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=9.1801;MLEAC=3;MLEAF=0.375;MQ=26.35;MQ0=0;MQRankSum=0.501;QD=1.77;ReadPosRankSum=-1.276;SB=25.58 GT:AD:DP:GQ:PL 0/1:11,3:14:38:38,0,196 0/1:15,2:17:39:39,0,148 0/1:9,2:12:40:40,0,119 0/0:4,0:5:3:0,3,31 +chr14 62213830 . T G 65.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.878;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.6681;MLEAC=3;MLEAF=0.375;MQ=32.15;MQ0=0;MQRankSum=-0.736;QD=0.65;ReadPosRankSum=3.792;SB=-6.915e-02 GT:AD:DP:GQ:PL 0/0:42,1:43:34:0,34,586 0/1:43,3:46:48:48,0,441 0/1:42,3:45:17:17,0,755 0/1:9,2:11:44:44,0,147 +chr14 62463119 . AG A 56.22 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.249;DP=210;FS=47.088;HaplotypeScore=177.0316;MLEAC=2;MLEAF=0.250;MQ=25.79;MQ0=0;MQRankSum=-0.363;QD=0.64;ReadPosRankSum=-0.406;SB=0.618 GT:AD:DP:GQ:PL 0/0:56,4:38:56:0,56,1089 0/0:57,1:35:27:0,27,555 0/1:45,2:32:13:13,0,645 0/1:24,5:27:93:93,0,299 +chr14 64034774 . G T 30.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.804;DP=77;Dels=0.00;FS=62.649;HaplotypeScore=2.9049;MLEAC=3;MLEAF=0.375;MQ=16.84;MQ0=0;MQRankSum=2.054;QD=0.60;ReadPosRankSum=-0.895;SB=-1.182e+00 GT:AD:DP:GQ:PL 0/1:17,2:19:10:10,0,95 0/1:15,3:18:14:14,0,54 0/0:24,1:26:15:0,15,156 0/1:10,4:14:49:49,0,66 +chr14 64462007 rs1255912 A C 156.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.307;DB;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9196;MLEAC=1;MLEAF=0.125;MQ=34.31;MQ0=0;MQRankSum=1.055;QD=7.80;ReadPosRankSum=2.101;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,6:20:99:192,0,365 0/0:27,0:27:69:0,69,881 0/0:28,0:28:78:0,78,941 0/0:8,0:8:12:0,12,148 +chr14 64568757 . T G 483.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.100;DP=109;Dels=0.02;FS=16.234;HaplotypeScore=7.9713;MLEAC=4;MLEAF=0.500;MQ=26.63;MQ0=0;MQRankSum=2.425;QD=4.44;ReadPosRankSum=1.513;SB=-1.227e-02 GT:AD:DP:GQ:PL 0/1:18,8:26:99:198,0,144 0/1:17,6:23:99:121,0,165 0/1:25,7:32:99:171,0,130 0/1:23,3:26:36:36,0,106 +chr14 64572907 . C T 52.27 . AC=1;AF=0.250;AN=4;BaseQRankSum=0.937;DP=11;Dels=0.00;FS=3.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.250;MQ=23.73;MQ0=0;MQRankSum=0.000;QD=10.45;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:2,3:5:18:84,0,18 ./. 0/0:2,0:2:3:0,3,44 +chr14 65054816 rs55791907 C T 61.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.500;DB;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=2.4623;MLEAC=1;MLEAF=0.125;MQ=35.26;MQ0=0;MQRankSum=-4.198;QD=1.68;ReadPosRankSum=-0.134;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:31,6:37:98:98,0,940 0/0:65,0:65:99:0,180,2300 0/0:39,4:44:54:0,54,1060 0/0:33,1:34:50:0,50,941 +chr14 65054858 rs723594 T C 1724.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.951;DB;DP=204;Dels=0.00;FS=12.419;HaplotypeScore=3.8414;MLEAC=3;MLEAF=0.375;MQ=38.29;MQ0=0;MQRankSum=-2.475;QD=11.81;ReadPosRankSum=-0.172;SB=-4.760e+02 GT:AD:DP:GQ:PL 0/1:28,15:44:99:457,0,937 0/0:57,1:58:99:0,168,2235 0/1:31,26:57:99:738,0,875 0/1:26,18:44:99:573,0,842 +chr14 65242125 rs4902312 C T 230.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.373;DB;DP=31;Dels=0.03;FS=5.946;HaplotypeScore=1.3850;MLEAC=4;MLEAF=0.500;MQ=27.91;MQ0=0;MQRankSum=-0.216;QD=10.96;ReadPosRankSum=-0.024;SB=-6.028e+01 GT:AD:DP:GQ:PL 1/1:1,4:5:9:109,9,0 0/0:9,0:9:18:0,18,218 0/1:6,5:11:99:145,0,155 0/1:4,1:5:23:23,0,59 +chr14 65262142 . G C 163.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.502;DP=87;Dels=0.01;FS=12.872;HaplotypeScore=12.9570;MLEAC=4;MLEAF=0.500;MQ=26.37;MQ0=0;MQRankSum=-1.049;QD=1.88;ReadPosRankSum=3.978;SB=-4.040e-01 GT:AD:DP:GQ:PL 0/1:14,4:18:70:70,0,197 0/1:14,4:18:6:6,0,217 0/1:22,5:27:86:86,0,322 0/1:21,2:23:43:43,0,58 +chr14 65510971 rs45565742 C T 1549.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.070;DB;DP=216;Dels=0.01;FS=2.192;HaplotypeScore=3.1607;MLEAC=3;MLEAF=0.375;MQ=38.12;MQ0=0;MQRankSum=-1.643;QD=10.00;ReadPosRankSum=2.255;SB=-9.801e+01 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,153,1962 0/1:35,17:52:99:539,0,956 0/1:35,15:50:99:451,0,966 0/1:31,19:50:99:603,0,964 +chr14 65550816 rs7159443 T A 2002.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.704;DB;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.0695;MLEAC=4;MLEAF=0.500;MQ=37.13;MQ0=0;MQRankSum=-3.389;QD=12.67;ReadPosRankSum=0.841;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,20:45:99:643,0,761 0/1:31,13:44:99:384,0,1059 0/1:24,24:48:99:811,0,748 0/1:13,7:21:99:207,0,301 +chr14 65935025 . T A 81.15 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.548;DP=180;Dels=0.01;FS=16.687;HaplotypeScore=2.4243;MLEAC=5;MLEAF=0.625;MQ=10.64;MQ0=0;MQRankSum=3.722;QD=0.45;ReadPosRankSum=-1.755;SB=2.34 GT:AD:DP:GQ:PL 1/1:40,2:42:6:60,6,0 0/1:43,3:47:20:20,0,32 0/1:53,1:55:5:5,0,206 0/1:32,2:34:24:39,0,24 +chr14 66136163 rs35949016 C A 920.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.290;DB;DP=187;Dels=0.01;FS=12.320;HaplotypeScore=13.7056;MLEAC=3;MLEAF=0.375;MQ=33.35;MQ0=0;MQRankSum=-0.385;QD=6.67;ReadPosRankSum=1.308;SB=-1.430e+02 GT:AD:DP:GQ:PL 0/1:37,9:46:99:243,0,752 0/0:49,0:49:99:0,114,1432 0/1:43,11:54:99:328,0,756 0/1:23,13:36:99:393,0,368 +chr14 66346446 rs4902430 T G 798.46 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.412;DB;DP=144;Dels=0.01;FS=16.475;HaplotypeScore=2.5102;MLEAC=7;MLEAF=0.875;MQ=17.87;MQ0=0;MQRankSum=0.977;QD=5.54;ReadPosRankSum=2.535;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:6,33:39:18:232,18,0 1/1:4,42:46:21:244,21,0 0/1:2,30:33:6:188,0,6 1/1:1,24:25:15:176,15,0 +chr14 68024134 rs3825723 A T 3018.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.559;DB;DP=172;Dels=0.00;FS=32.340;HaplotypeScore=4.2048;MLEAC=6;MLEAF=0.750;MQ=30.40;MQ0=0;MQRankSum=-0.329;QD=17.55;ReadPosRankSum=0.349;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:28,13:41:99:281,0,722 0/1:36,19:55:99:490,0,918 1/1:4,39:43:92:1288,92,0 1/1:4,29:33:84:1006,84,0 +chr14 68024198 . C G 221.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.344;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=11.5347;MLEAC=3;MLEAF=0.375;MQ=23.49;MQ0=0;MQRankSum=0.420;QD=4.27;ReadPosRankSum=0.420;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:75:75,0,130 0/0:17,1:18:24:0,24,255 0/1:13,5:18:33:74,0,33 0/1:11,5:17:30:116,0,30 +chr14 68035878 . C T 182.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.227;DP=96;Dels=0.01;FS=33.023;HaplotypeScore=12.7737;MLEAC=3;MLEAF=0.375;MQ=28.47;MQ0=0;MQRankSum=-2.219;QD=2.65;ReadPosRankSum=-1.246;SB=-2.453e-01 GT:AD:DP:GQ:PL 0/1:16,6:22:99:118,0,174 0/1:23,1:24:9:9,0,325 0/0:24,3:27:11:0,11,377 0/1:17,5:22:98:98,0,337 +chr14 68039027 rs2236231 A G 471.38 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.227;DB;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7325;MLEAC=8;MLEAF=1.00;MQ=24.45;MQ0=0;MQRankSum=2.113;QD=21.43;ReadPosRankSum=0.057;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:9:95,9,0 1/1:0,5:5:9:99,9,0 1/1:2,7:9:15:173,15,0 1/1:0,5:5:15:143,15,0 +chr14 68041124 rs1555400 G C 1225.99 . AC=8;AF=1.00;AN=8;DB;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=27.26;MQ0=0;QD=26.08;SB=-4.600e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:30:311,30,0 1/1:0,15:15:36:402,36,0 1/1:1,10:11:24:253,24,0 1/1:0,11:11:27:299,27,0 +chr14 68082978 rs941706 G A 122.14 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.531;DB;DP=29;Dels=0.03;FS=8.239;HaplotypeScore=0.1928;MLEAC=6;MLEAF=1.00;MQ=15.66;MQ0=0;MQRankSum=1.531;QD=5.31;ReadPosRankSum=1.123;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,5:7:3:35,3,0 1/1:1,6:7:6:67,6,0 1/1:4,5:9:6:56,6,0 ./. +chr14 68189216 rs112963728 G A 69.55 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.094;DB;DP=35;Dels=0.00;FS=2.993;HaplotypeScore=3.0838;MLEAC=5;MLEAF=0.625;MQ=16.36;MQ0=0;MQRankSum=0.094;QD=1.99;ReadPosRankSum=3.559;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:33:33,0,65 0/1:6,3:9:14:14,0,41 1/1:6,2:8:6:48,6,0 0/1:5,1:6:17:18,0,17 +chr14 68242898 rs12886915 G A 1931.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.386;DB;DP=119;Dels=0.00;FS=6.286;HaplotypeScore=1.2333;MLEAC=4;MLEAF=0.500;MQ=34.59;MQ0=0;MQRankSum=-2.538;QD=20.12;ReadPosRankSum=0.837;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:66:0,66,889 1/1:2,29:31:55:1055,55,0 0/1:16,17:33:99:503,0,506 0/1:18,14:32:99:422,0,422 +chr14 68244947 . C G 164.54 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.720;DP=275;Dels=0.00;FS=51.502;HaplotypeScore=2.9803;MLEAC=3;MLEAF=0.375;MQ=35.99;MQ0=0;MQRankSum=-5.588;QD=0.84;ReadPosRankSum=-0.891;SB=-7.629e-01 GT:AD:DP:GQ:PL 0/1:74,10:84:82:82,0,2372 0/1:69,6:75:9:9,0,1880 0/0:76,2:78:99:0,133,2449 0/1:32,6:38:99:116,0,821 +chr14 68282603 . C G 34.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.008;DP=170;Dels=0.00;FS=4.609;HaplotypeScore=3.4225;MLEAC=1;MLEAF=0.125;MQ=34.68;MQ0=0;MQRankSum=-2.501;QD=1.13;ReadPosRankSum=-0.659;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:49,1:50:99:0,99,1580 0/0:49,1:50:99:0,108,1314 0/0:39,0:39:99:0,111,1353 0/1:26,5:31:71:71,0,670 +chr14 69346813 . C A 86.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.619;DP=83;Dels=0.00;FS=13.011;HaplotypeScore=9.9370;MLEAC=3;MLEAF=0.375;MQ=23.13;MQ0=0;MQRankSum=1.620;QD=1.34;ReadPosRankSum=-2.583;SB=-2.843e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:27:0,27,255 0/1:19,2:21:21:21,0,247 0/1:22,3:26:46:46,0,117 0/1:14,4:18:63:63,0,133 +chr14 69378958 . T G 347.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.488;DP=177;Dels=0.00;FS=11.357;HaplotypeScore=2.5211;MLEAC=4;MLEAF=0.500;MQ=28.82;MQ0=0;MQRankSum=0.751;QD=1.96;ReadPosRankSum=0.328;SB=-2.976e-02 GT:AD:DP:GQ:PL 0/1:37,10:47:99:162,0,681 0/1:40,4:44:20:20,0,565 0/1:37,8:45:99:153,0,519 0/1:36,5:41:55:55,0,525 +chr14 69676946 . G A 473.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.408;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9324;MLEAC=3;MLEAF=0.375;MQ=31.02;MQ0=0;MQRankSum=-3.414;QD=3.92;ReadPosRankSum=3.371;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,16:44:99:283,0,585 0/1:30,9:39:99:178,0,400 0/1:31,6:38:56:56,0,500 0/0:6,0:6:18:0,18,201 +chr14 70263546 . A G 313.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.095;DP=64;Dels=0.00;FS=50.768;HaplotypeScore=6.4473;MLEAC=4;MLEAF=0.500;MQ=27.84;MQ0=0;MQRankSum=-3.523;QD=4.90;ReadPosRankSum=1.528;SB=-6.577e-01 GT:AD:DP:GQ:PL 0/1:12,1:14:6:6,0,221 0/1:7,6:13:99:133,0,114 0/1:14,5:19:78:78,0,189 0/1:11,7:18:99:138,0,147 +chr14 70490215 . GGCA G 892.57 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.257;DP=123;FS=3.233;HaplotypeScore=68.5948;MLEAC=4;MLEAF=0.500;MQ=19.11;MQ0=0;MQRankSum=-3.221;QD=7.26;ReadPosRankSum=3.056;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:19,3:10:19:230,0,19 0/1:27,4:14:66:66,0,261 0/1:24,4:18:99:214,0,234 0/1:26,6:18:77:434,0,77 +chr14 70713926 . G C 44.63 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.601;DP=138;Dels=0.01;FS=11.946;HaplotypeScore=2.5198;MLEAC=3;MLEAF=0.375;MQ=13.25;MQ0=0;MQRankSum=2.682;QD=0.58;ReadPosRankSum=-0.849;SB=-1.835e-02 GT:AD:DP:GQ:PL 1/1:36,3:39:6:61,6,0 0/1:31,5:36:27:27,0,68 0/0:35,1:36:6:0,6,53 0/0:23,2:25:6:0,6,58 +chr14 70883619 . G A 75.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.951;DP=103;Dels=0.05;FS=16.336;HaplotypeScore=42.2440;MLEAC=4;MLEAF=0.500;MQ=22.72;MQ0=0;MQRankSum=-0.273;QD=0.74;ReadPosRankSum=1.199;SB=-1.663e-01 GT:AD:DP:GQ:PL 0/1:17,2:19:12:12,0,147 0/1:20,5:25:32:32,0,161 0/1:27,5:32:38:38,0,228 0/1:20,2:22:36:36,0,111 +chr14 71209106 . A C 65.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.403;DP=147;Dels=0.00;FS=13.979;HaplotypeScore=2.6316;MLEAC=2;MLEAF=0.250;MQ=39.24;MQ0=0;MQRankSum=-4.081;QD=0.91;ReadPosRankSum=0.539;SB=-4.810e-02 GT:AD:DP:GQ:PL 0/0:35,3:38:36:0,36,1099 0/1:35,5:40:25:25,0,1070 0/0:36,1:37:51:0,51,1030 0/1:26,6:32:82:82,0,642 +chr14 71455564 . T G 84.87 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.639;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9974;MLEAC=5;MLEAF=0.625;MQ=28.69;MQ0=0;MQRankSum=1.505;QD=1.77;ReadPosRankSum=3.443;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:47:47,0,178 0/1:9,1:10:10:10,0,84 0/1:14,2:16:39:39,0,140 1/1:3,2:5:3:31,3,0 +chr14 73002923 . C T 58.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.006;DP=327;Dels=0.00;FS=27.550;HaplotypeScore=2.6434;MLEAC=1;MLEAF=0.125;MQ=37.08;MQ0=0;MQRankSum=-2.236;QD=0.84;ReadPosRankSum=-0.594;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/0:87,1:88:99:0,197,2662 0/0:86,2:88:99:0,149,2431 0/0:81,0:81:99:0,195,2366 0/1:63,7:70:95:95,0,1501 +chr14 73138323 . C G 392.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.412;DP=67;Dels=0.00;FS=2.648;HaplotypeScore=0.2492;MLEAC=4;MLEAF=0.500;MQ=36.44;MQ0=0;MQRankSum=-4.395;QD=5.86;ReadPosRankSum=3.570;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,5:22:99:123,0,447 0/1:8,5:13:99:104,0,216 0/1:15,4:19:98:98,0,344 0/1:9,4:13:99:110,0,162 +chr14 73360949 rs2215901 A G 164.12 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.520;DB;DP=12;Dels=0.00;FS=9.622;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=22.69;MQ0=0;MQRankSum=2.520;QD=13.68;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:6:69,6,0 1/1:1,1:2:3:24,3,0 1/1:3,1:4:3:34,3,0 1/1:0,2:2:6:74,6,0 +chr14 73404825 rs2302586 G C 220.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.368;DB;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=9.5965;MLEAC=1;MLEAF=0.125;MQ=37.12;MQ0=0;MQRankSum=-3.697;QD=3.07;ReadPosRankSum=1.076;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:59,13:72:99:257,0,1775 0/0:90,0:90:99:0,262,3366 0/0:111,0:112:99:0,316,4071 0/0:85,0:85:99:0,232,2908 +chr14 73572825 rs362429 G A 1356.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.516;DB;DP=171;Dels=0.01;FS=17.935;HaplotypeScore=10.1229;MLEAC=5;MLEAF=0.625;MQ=29.44;MQ0=0;MQRankSum=0.474;QD=7.93;ReadPosRankSum=0.366;SB=-4.476e+02 GT:AD:DP:GQ:PL 1/1:3,18:22:25:515,25,0 0/1:47,23:71:99:593,0,1052 0/1:43,11:54:99:245,0,820 0/1:17,5:22:49:49,0,456 +chr14 73664853 rs165932 G T 997.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.152;DB;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=0.2474;MLEAC=5;MLEAF=0.625;MQ=32.47;MQ0=0;MQRankSum=-2.718;QD=11.74;ReadPosRankSum=0.431;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:63:720,63,0 0/1:17,8:25:99:211,0,466 0/1:20,6:26:29:29,0,668 0/1:8,4:12:83:83,0,207 +chr14 73673072 . G T 97.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.388;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=7.0368;MLEAC=4;MLEAF=0.500;MQ=30.31;MQ0=0;MQRankSum=-1.317;QD=1.71;ReadPosRankSum=0.196;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,2:20:32:32,0,342 0/1:22,4:26:41:41,0,284 0/0:29,2:31:1:0,1,610 0/1:7,3:10:49:65,0,49 +chr14 73721372 . A G 188.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.861;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.6764;MLEAC=4;MLEAF=0.500;MQ=30.40;MQ0=0;MQRankSum=-1.202;QD=1.87;ReadPosRankSum=2.043;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:22,4:26:53:53,0,439 0/1:21,4:25:71:71,0,378 0/1:19,4:23:58:58,0,410 0/1:23,4:27:49:49,0,370 +chr14 73725823 . G T 45.76 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.093;DP=78;Dels=0.00;FS=38.879;HaplotypeScore=2.8726;MLEAC=2;MLEAF=0.250;MQ=28.19;MQ0=0;MQRankSum=-0.116;QD=1.02;ReadPosRankSum=1.158;SB=0.096 GT:AD:DP:GQ:PL 0/1:18,5:23:53:53,0,426 0/1:19,3:22:34:34,0,431 0/0:11,0:11:15:0,15,171 0/0:21,1:22:14:0,14,471 +chr14 73958979 . T G 66.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.192;DP=144;Dels=0.01;FS=23.113;HaplotypeScore=3.7503;MLEAC=3;MLEAF=0.375;MQ=34.75;MQ0=0;MQRankSum=-0.620;QD=0.59;ReadPosRankSum=-0.081;SB=-1.606e+00 GT:AD:DP:GQ:PL 0/0:30,1:31:42:0,42,910 0/1:26,3:29:16:16,0,677 0/1:37,7:44:86:86,0,1226 0/1:35,3:39:6:6,0,790 +chr14 74062056 . G C 319.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.635;DP=171;Dels=0.00;FS=144.204;HaplotypeScore=8.5099;MLEAC=4;MLEAF=0.500;MQ=26.97;MQ0=0;MQRankSum=2.012;QD=1.87;ReadPosRankSum=-3.229;SB=1.13 GT:AD:DP:GQ:PL 0/1:41,3:44:19:19,0,679 0/1:40,4:44:49:49,0,554 0/1:35,6:41:99:118,0,513 0/1:32,10:42:99:176,0,574 +chr14 74205487 . G T 82.75 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.880;DP=71;Dels=0.00;FS=4.902;HaplotypeScore=2.1228;MLEAC=2;MLEAF=0.250;MQ=31.09;MQ0=0;MQRankSum=-1.038;QD=2.12;ReadPosRankSum=-0.644;SB=-1.449e-01 GT:AD:DP:GQ:PL 0/0:12,1:13:18:0,18,216 0/1:19,2:21:20:20,0,296 0/0:19,0:19:27:0,27,319 0/1:14,4:18:99:104,0,201 +chr14 74307246 rs11621523 C A 168.66 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.950;DB;DP=18;Dels=0.00;FS=2.452;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=20.08;MQ0=0;MQRankSum=2.583;QD=9.92;ReadPosRankSum=0.791;SB=-6.416e+01 GT:AD:DP:GQ:PL 1/1:2,4:6:6:66,6,0 1/1:3,3:6:6:63,6,0 1/1:0,5:5:6:76,6,0 ./. +chr14 74343981 rs45542836 T A 219.72 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.377;DB;DP=22;Dels=0.00;FS=5.006;HaplotypeScore=0.2167;MLEAC=7;MLEAF=0.875;MQ=18.65;MQ0=0;MQRankSum=2.149;QD=9.99;ReadPosRankSum=-1.272;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,6:8:15:126,15,0 0/1:4,3:7:32:55,0,32 1/1:2,3:5:6:58,6,0 1/1:1,1:2:3:23,3,0 +chr14 74413129 rs7146634 C G 6366.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.362;DB;DP=232;Dels=0.00;FS=10.480;HaplotypeScore=2.4524;MLEAC=7;MLEAF=0.875;MQ=34.10;MQ0=0;MQRankSum=-1.284;QD=27.44;ReadPosRankSum=3.145;SB=-2.788e+03 GT:AD:DP:GQ:PL 1/1:2,57:59:99:2118,168,0 0/1:47,27:74:99:842,0,1296 1/1:2,53:55:99:1932,156,0 1/1:2,40:43:99:1474,120,0 +chr14 74753477 . C G 32.13 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.877;DP=130;Dels=0.03;FS=28.201;HaplotypeScore=13.4580;MLEAC=4;MLEAF=0.500;MQ=29.36;MQ0=0;MQRankSum=-1.097;QD=0.25;ReadPosRankSum=0.052;SB=-5.548e-01 GT:AD:DP:GQ:PL 0/1:27,2:29:11:11,0,514 0/1:26,2:28:13:13,0,416 0/1:37,3:40:17:17,0,605 0/1:25,3:29:33:33,0,404 +chr14 74756122 . G T 36.96 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.063;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=4.8764;MLEAC=2;MLEAF=0.250;MQ=24.20;MQ0=0;MQRankSum=1.449;QD=1.95;ReadPosRankSum=0.315;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:15:15,0,144 0/0:8,0:8:6:0,6,58 0/1:5,2:7:29:61,0,29 0/0:6,0:6:3:0,3,27 +chr14 74825547 . C T 35 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.834;DP=122;Dels=0.04;FS=3.267;HaplotypeScore=12.9561;MLEAC=1;MLEAF=0.125;MQ=28.73;MQ0=0;MQRankSum=-2.697;QD=1.13;ReadPosRankSum=0.804;SB=-1.004e+00 GT:AD:DP:GQ:PL 0/0:28,1:29:21:0,21,499 0/0:26,1:27:39:0,39,426 0/0:30,1:31:37:0,37,619 0/1:24,6:30:71:71,0,323 +chr14 74976051 rs180751344 G T 69.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.087;DB;DP=121;Dels=0.02;FS=17.759;HaplotypeScore=9.1468;MLEAC=2;MLEAF=0.250;MQ=30.67;MQ0=0;MQRankSum=-2.721;QD=1.12;ReadPosRankSum=3.113;SB=0.134 GT:AD:DP:GQ:PL 0/0:24,2:26:26:0,26,541 0/1:30,7:37:89:89,0,643 0/0:33,0:33:63:0,63,704 0/1:20,3:23:22:22,0,285 +chr14 75136902 . C A 69.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.323;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.7539;MLEAC=3;MLEAF=0.375;MQ=25.05;MQ0=0;MQRankSum=0.738;QD=1.07;ReadPosRankSum=0.995;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,1:20:3:0,3,223 0/1:18,3:21:38:38,0,57 0/1:16,2:18:33:33,0,59 0/1:24,2:26:40:40,0,172 +chr14 75245197 . G C 224.99 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.238;DP=223;Dels=0.00;FS=10.783;HaplotypeScore=2.3196;MLEAC=2;MLEAF=0.250;MQ=34.11;MQ0=0;MQRankSum=2.689;QD=1.81;ReadPosRankSum=-3.774;SB=-1.746e-01 GT:AD:DP:GQ:PL 0/1:56,6:62:67:67,0,1399 0/0:73,3:76:67:0,67,1901 0/1:51,11:62:99:199,0,1364 0/0:22,1:23:8:0,8,540 +chr14 75413513 . A T 39.03 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.076;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=3.5963;MLEAC=2;MLEAF=0.250;MQ=30.11;MQ0=0;MQRankSum=-0.681;QD=1.45;ReadPosRankSum=-1.867;SB=-3.477e+01 GT:AD:DP:GQ:PL 0/1:10,3:13:67:67,0,202 0/0:11,0:11:6:0,6,71 0/0:18,0:18:36:0,36,415 0/1:12,1:13:12:12,0,133 +chr14 75489470 . G C 1029.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.021;DP=123;Dels=0.01;FS=24.762;HaplotypeScore=25.4428;MLEAC=4;MLEAF=0.500;MQ=21.83;MQ0=0;MQRankSum=0.273;QD=8.37;ReadPosRankSum=2.673;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,13:25:98:251,0,98 0/1:16,15:31:28:252,0,28 0/1:13,15:29:42:289,0,42 0/1:12,25:37:84:280,0,84 +chr14 75583268 rs7145159 T C 456.28 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.694;DB;DP=45;Dels=0.00;FS=2.996;HaplotypeScore=1.0617;MLEAC=3;MLEAF=0.500;MQ=26.46;MQ0=0;MQRankSum=2.053;QD=16.30;ReadPosRankSum=0.241;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,14:15:39:457,39,0 0/0:12,0:12:24:0,24,274 0/1:10,3:13:44:44,0,199 ./. +chr14 75643198 . C G 96.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.824;DP=135;Dels=0.01;FS=83.097;HaplotypeScore=5.7299;MLEAC=3;MLEAF=0.375;MQ=30.88;MQ0=0;MQRankSum=-3.878;QD=0.98;ReadPosRankSum=0.436;SB=-1.584e-02 GT:AD:DP:GQ:PL 0/1:28,5:33:38:38,0,605 0/1:29,6:35:29:29,0,510 0/0:33,1:35:72:0,72,863 0/1:22,8:30:73:73,0,441 +chr14 76200344 . G C 75.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.046;DP=154;Dels=0.01;FS=77.043;HaplotypeScore=0.9677;MLEAC=1;MLEAF=0.125;MQ=39.89;MQ0=0;MQRankSum=-0.498;QD=1.53;ReadPosRankSum=-0.889;SB=-6.419e+00 GT:AD:DP:GQ:PL 0/1:42,7:49:99:111,0,1304 0/0:36,1:37:58:0,58,1181 0/0:43,1:44:84:0,84,1487 0/0:22,1:23:16:0,16,704 +chr14 77275630 rs34270005 C A 199.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.611;DB;DP=56;Dels=0.00;FS=2.583;HaplotypeScore=0.7444;MLEAC=1;MLEAF=0.125;MQ=33.28;MQ0=0;MQRankSum=-1.065;QD=16.67;ReadPosRankSum=-0.340;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:4,8:12:52:236,0,52 0/0:14,0:14:36:0,36,435 0/0:9,0:9:27:0,27,357 0/0:21,0:21:57:0,57,697 +chr14 77605959 . G A 36.12 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.979;DP=15;Dels=0.00;FS=19.590;HaplotypeScore=1.9405;MLEAC=1;MLEAF=0.125;MQ=29.38;MQ0=0;MQRankSum=-1.632;QD=6.02;ReadPosRankSum=0.588;SB=-1.119e+00 GT:AD:DP:GQ:PL 0/0:2,0:2:6:0,6,81 0/0:2,0:2:3:0,3,37 0/0:4,1:5:9:0,9,107 0/1:3,3:6:60:71,0,60 +chr14 77710587 . C T 49.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.881;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9230;MLEAC=2;MLEAF=0.250;MQ=28.48;MQ0=0;MQRankSum=-1.767;QD=1.15;ReadPosRankSum=2.202;SB=-1.371e-02 GT:AD:DP:GQ:PL 0/0:21,1:22:19:0,19,485 0/1:18,3:21:36:36,0,334 0/1:18,4:22:55:55,0,400 0/0:23,0:23:45:0,45,484 +chr14 77796004 . G A 34.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.260;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.6264;MLEAC=2;MLEAF=0.250;MQ=27.15;MQ0=0;MQRankSum=-0.300;QD=0.59;ReadPosRankSum=-0.701;SB=24.26 GT:AD:DP:GQ:PL 0/1:19,2:21:53:53,0,119 0/1:15,3:18:15:15,0,64 0/0:20,0:20:24:0,24,202 0/1:16,1:20:8:8,0,140 +chr14 77845121 rs2193595 A G 2608.08 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.321;DB;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.9323;MLEAC=7;MLEAF=0.875;MQ=34.61;MQ0=0;MQRankSum=1.575;QD=27.17;ReadPosRankSum=0.757;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:4,19:23:7:670,7,0 0/1:11,16:27:97:550,0,97 1/1:5,29:34:81:1010,81,0 1/1:1,11:12:33:422,33,0 +chr14 77917643 . T C 552.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.150;DP=251;Dels=0.00;FS=78.879;HaplotypeScore=2.7185;MLEAC=4;MLEAF=0.500;MQ=37.68;MQ0=0;MQRankSum=-1.510;QD=2.20;ReadPosRankSum=0.109;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:52,6:58:77:77,0,1225 0/1:50,13:63:99:292,0,1067 0/1:67,7:75:61:61,0,1701 0/1:46,9:55:99:165,0,1086 +chr14 78174149 . A G 82.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.389;DP=56;Dels=0.00;FS=4.976;HaplotypeScore=4.9369;MLEAC=2;MLEAF=0.250;MQ=27.06;MQ0=0;MQRankSum=-1.572;QD=2.67;ReadPosRankSum=-1.471;SB=0.161 GT:AD:DP:GQ:PL 0/1:13,2:15:42:42,0,186 0/0:14,1:15:18:0,18,198 0/1:12,4:16:82:82,0,219 0/0:9,1:10:12:0,12,155 +chr14 78184946 . C A 31.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.268;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=1.8637;MLEAC=2;MLEAF=0.250;MQ=29.16;MQ0=0;MQRankSum=-0.085;QD=2.43;ReadPosRankSum=2.451;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:17:31,0,17 0/1:6,2:8:40:40,0,61 0/0:8,0:8:6:0,6,49 0/0:2,0:2:3:0,3,39 +chr14 78657484 rs8018059 G A 47.25 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.589;DB;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.5335;MLEAC=4;MLEAF=0.667;MQ=22.05;MQ0=0;MQRankSum=1.589;QD=11.81;ReadPosRankSum=0.572;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:44,3,0 1/1:2,1:3:3:41,3,0 0/0:5,0:5:3:0,3,43 ./. +chr14 78904456 rs17107581 A G 41.26 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=3;MLEAF=0.750;MQ=27.00;MQ0=0;MQRankSum=-0.736;QD=20.63;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,39 1/1:0,2:2:6:76,6,0 ./. ./. +chr14 78993170 rs12882387 A C 1529.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.366;DB;DP=147;Dels=0.00;FS=6.518;HaplotypeScore=1.4944;MLEAC=4;MLEAF=0.500;MQ=37.88;MQ0=0;MQRankSum=-4.236;QD=15.14;ReadPosRankSum=2.368;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:2,27:29:55:936,55,0 0/0:46,0:46:99:0,132,1776 0/1:39,15:54:99:403,0,1144 0/1:9,9:18:99:239,0,323 +chr14 80669565 . T G 76.37 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.958;DP=188;Dels=0.00;FS=136.032;HaplotypeScore=6.2912;MLEAC=3;MLEAF=0.375;MQ=34.46;MQ0=0;MQRankSum=-4.934;QD=0.58;ReadPosRankSum=0.780;SB=-5.746e+00 GT:AD:DP:GQ:PL 0/1:39,6:46:1:1,0,1226 0/0:53,3:56:32:0,32,1396 0/1:43,6:49:18:18,0,1353 0/1:29,8:37:97:97,0,831 +chr14 81470024 rs55960644 A G 90.11 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.370;DB;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.0337;MLEAC=1;MLEAF=0.125;MQ=30.28;MQ0=0;MQRankSum=1.567;QD=10.01;ReadPosRankSum=0.598;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,4:9:99:126,0,141 0/0:9,0:9:24:0,24,306 0/0:9,0:9:15:0,15,181 0/0:5,0:5:12:0,12,137 +chr14 81574661 . G T 134.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.738;DP=42;Dels=0.00;FS=5.632;HaplotypeScore=5.5568;MLEAC=4;MLEAF=0.500;MQ=20.77;MQ0=0;MQRankSum=2.066;QD=3.21;ReadPosRankSum=0.935;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:66:68,0,66 0/1:9,2:11:44:44,0,56 0/1:11,3:15:42:42,0,45 0/1:5,1:6:20:23,0,20 +chr14 81744553 . T C 96.22 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.815;DP=185;Dels=0.01;FS=165.253;HaplotypeScore=4.6564;MLEAC=2;MLEAF=0.250;MQ=37.63;MQ0=0;MQRankSum=-5.526;QD=1.25;ReadPosRankSum=1.657;SB=-1.545e+00 GT:AD:DP:GQ:PL 0/1:35,7:42:80:80,0,1221 0/0:48,6:54:6:0,6,1743 0/0:50,2:52:83:0,83,1689 0/1:30,5:35:57:57,0,1035 +chr14 81744736 rs3813535 A G 6729.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.482;DB;DP=194;Dels=0.00;FS=3.689;HaplotypeScore=0.8302;MLEAC=8;MLEAF=1.00;MQ=35.01;MQ0=0;MQRankSum=1.499;QD=34.69;ReadPosRankSum=1.191;SB=-2.317e+03 GT:AD:DP:GQ:PL 1/1:2,46:48:99:1669,107,0 1/1:6,53:59:99:1960,131,0 1/1:2,46:48:99:1737,112,0 1/1:1,38:39:99:1363,111,0 +chr14 81862393 . T C 137.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.971;DP=163;Dels=0.00;FS=16.826;HaplotypeScore=15.0446;MLEAC=3;MLEAF=0.375;MQ=32.62;MQ0=0;MQRankSum=-0.167;QD=1.74;ReadPosRankSum=-0.276;SB=-3.920e+00 GT:AD:DP:GQ:PL 0/0:36,3:39:0:0,0,743 0/1:35,6:41:96:96,0,881 0/0:44,1:45:52:0,52,862 0/1:32,6:38:81:81,0,678 +chr14 88237600 rs61980206 A G 216.02 . AC=6;AF=1.00;AN=6;BaseQRankSum=3.359;DB;DP=48;Dels=0.02;FS=23.920;HaplotypeScore=6.1112;MLEAC=6;MLEAF=1.00;MQ=14.60;MQ0=0;MQRankSum=1.711;QD=5.54;ReadPosRankSum=-2.134;SB=-8.818e+01 GT:AD:DP:GQ:PL 1/1:5,9:14:12:119,12,0 1/1:6,3:9:9:77,9,0 1/1:6,9:15:6:57,6,0 ./. +chr14 88707237 . A G 48.15 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.560;DP=43;Dels=0.00;FS=2.569;HaplotypeScore=7.6393;MLEAC=2;MLEAF=0.250;MQ=20.54;MQ0=0;MQRankSum=1.200;QD=2.67;ReadPosRankSum=0.960;SB=44.30 GT:AD:DP:GQ:PL 0/0:5,1:7:3:0,3,25 0/0:9,0:9:6:0,6,58 1/1:14,4:18:9:88,9,0 0/0:8,0:9:3:0,3,27 +chr14 88903872 . G A 68.22 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.140;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6358;MLEAC=2;MLEAF=0.250;MQ=28.49;MQ0=0;MQRankSum=-0.897;QD=1.22;ReadPosRankSum=-0.808;SB=-1.136e-02 GT:AD:DP:GQ:PL 0/1:21,3:24:47:47,0,287 0/0:24,1:25:42:0,42,413 0/1:27,4:32:62:62,0,330 0/0:7,0:7:6:0,6,63 +chr14 89042248 . C T 40.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.532;DP=102;Dels=0.00;FS=2.375;HaplotypeScore=0.7498;MLEAC=1;MLEAF=0.125;MQ=39.30;MQ0=0;MQRankSum=-2.510;QD=6.83;ReadPosRankSum=-0.535;SB=-9.946e-03 GT:AD:DP:GQ:PL 0/0:25,0:25:54:0,54,660 0/0:33,1:34:70:0,70,1150 0/0:36,1:37:58:0,58,978 0/1:3,3:6:67:77,0,67 +chr14 89305703 . G A 32.72 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.104;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.6187;MLEAC=3;MLEAF=0.500;MQ=32.80;MQ0=0;MQRankSum=-4.454;QD=0.71;ReadPosRankSum=1.841;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,4:13:10:10,0,195 0/1:13,4:17:40:40,0,305 0/1:12,3:15:21:21,0,211 ./. +chr14 90455321 . G C 496.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.049;DP=169;Dels=0.02;FS=106.032;HaplotypeScore=8.0822;MLEAC=4;MLEAF=0.500;MQ=31.43;MQ0=0;MQRankSum=-3.537;QD=2.94;ReadPosRankSum=0.334;SB=-1.168e-02 GT:AD:DP:GQ:PL 0/1:32,8:41:69:69,0,755 0/1:35,6:41:99:106,0,657 0/1:37,8:46:99:158,0,854 0/1:29,9:38:99:206,0,497 +chr14 90729565 rs4904663 G T 661.84 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.331;DB;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.2493;MLEAC=6;MLEAF=0.750;MQ=32.20;MQ0=0;MQRankSum=0.190;QD=21.35;ReadPosRankSum=-0.190;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,7:14:99:227,0,160 0/1:3,4:7:56:133,0,56 1/1:0,9:9:27:309,27,0 1/1:0,1:1:3:37,3,0 +chr14 90729931 rs8022531 T C 2611.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.059;DB;DP=95;Dels=0.00;FS=20.689;HaplotypeScore=2.1782;MLEAC=6;MLEAF=0.750;MQ=36.69;MQ0=0;MQRankSum=3.189;QD=27.49;ReadPosRankSum=0.536;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,16:24:99:568,0,156 0/1:11,17:29:99:605,0,208 1/1:4,25:29:75:1025,75,0 1/1:1,12:13:36:460,36,0 +chr14 90736477 rs114316342 C T 1449.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.112;DB;DP=90;Dels=0.00;FS=5.378;HaplotypeScore=3.6338;MLEAC=5;MLEAF=0.625;MQ=32.07;MQ0=0;MQRankSum=-0.245;QD=16.11;ReadPosRankSum=0.959;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,6:17:99:165,0,288 0/1:10,10:20:99:277,0,149 1/1:9,21:30:43:726,43,0 0/1:10,12:23:21:327,0,21 +chr14 91110582 rs10577878 TACATAC T 526.45 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.036;DB;DP=72;FS=0.000;HaplotypeScore=15.9829;MLEAC=4;MLEAF=0.500;MQ=16.13;MQ0=0;MQRankSum=0.367;QD=9.08;ReadPosRankSum=0.501;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:5,10:5:15:447,15,0 0/0:13,0:4:12:0,12,358 0/1:11,6:6:71:71,0,408 0/1:19,3:8:65:65,0,602 +chr14 91369125 . G A 40.21 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.174;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.6229;MLEAC=3;MLEAF=0.375;MQ=29.46;MQ0=0;MQRankSum=-0.553;QD=1.68;ReadPosRankSum=0.256;SB=0.489 GT:AD:DP:GQ:PL 0/1:10,3:13:70:70,0,142 0/0:16,1:17:7:0,7,378 0/0:18,1:19:0:0,0,382 0/1:10,1:11:7:7,0,203 +chr14 91774381 . G A 32.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.388;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7459;MLEAC=1;MLEAF=0.125;MQ=31.07;MQ0=0;MQRankSum=-2.020;QD=2.29;ReadPosRankSum=-2.058;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:36:0,36,421 0/0:8,1:9:12:0,12,154 0/0:14,0:14:21:0,21,261 0/1:10,4:14:68:68,0,152 +chr14 91779272 . T G 30.91 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.175;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9851;MLEAC=2;MLEAF=0.250;MQ=31.43;MQ0=0;MQRankSum=-0.257;QD=0.88;ReadPosRankSum=2.710;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:42:0,42,455 0/1:16,4:20:63:63,0,389 0/1:14,1:15:5:5,0,247 0/0:13,1:14:2:0,2,290 +chr14 91804441 . C G 64.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.639;DP=155;Dels=0.00;FS=32.384;HaplotypeScore=6.2023;MLEAC=2;MLEAF=0.250;MQ=36.40;MQ0=0;MQRankSum=-1.057;QD=0.78;ReadPosRankSum=-2.041;SB=1.16 GT:AD:DP:GQ:PL 0/1:39,4:43:44:44,0,917 0/0:32,0:32:60:0,60,776 0/0:39,1:40:60:0,60,1102 0/1:36,4:40:62:62,0,751 +chr14 91928992 rs5020186 T G 1440.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.949;DB;DP=107;Dels=0.02;FS=0.000;HaplotypeScore=1.2016;MLEAC=4;MLEAF=0.500;MQ=36.29;MQ0=0;MQRankSum=-2.321;QD=20.01;ReadPosRankSum=1.084;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,29:33:60:1049,60,0 0/0:35,0:35:99:0,102,1340 0/1:17,9:26:99:267,0,560 0/1:5,6:11:99:173,0,154 +chr14 92074657 . T G 85.46 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.254;DP=86;Dels=0.01;FS=58.375;HaplotypeScore=13.0277;MLEAC=3;MLEAF=0.375;MQ=24.70;MQ0=0;MQRankSum=2.507;QD=1.04;ReadPosRankSum=-1.045;SB=27.22 GT:AD:DP:GQ:PL 0/1:15,1:16:14:14,0,121 0/1:28,3:31:56:56,0,237 0/1:30,4:34:56:56,0,337 0/0:3,0:4:3:0,3,26 +chr14 92088016 rs1296082 G A 4769.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.801;DB;DP=161;Dels=0.00;FS=0.864;HaplotypeScore=0.9754;MLEAC=7;MLEAF=0.875;MQ=34.17;MQ0=0;MQRankSum=-2.451;QD=29.62;ReadPosRankSum=1.893;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,40:42:85:1437,85,0 0/1:18,22:40:99:729,0,530 1/1:2,53:55:99:1928,102,0 1/1:3,21:24:54:675,54,0 +chr14 92357509 . A C 143.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.164;DP=76;Dels=0.00;FS=2.428;HaplotypeScore=3.4850;MLEAC=4;MLEAF=0.500;MQ=34.78;MQ0=0;MQRankSum=-1.495;QD=1.89;ReadPosRankSum=2.193;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,3:24:79:79,0,153 0/1:11,1:12:4:4,0,222 0/1:17,3:20:27:27,0,378 0/1:17,3:20:75:75,0,219 +chr14 92770901 rs6575244 G T 86.22 . AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=37.89;MQ0=0;QD=28.74;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:37,3,0 ./. 1/1:0,2:2:6:83,6,0 ./. +chr14 92792432 rs941645 T C 551.40 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.230;DB;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.9020;MLEAC=7;MLEAF=0.875;MQ=32.34;MQ0=0;MQRankSum=2.968;QD=23.97;ReadPosRankSum=-0.786;SB=11.97 GT:AD:DP:GQ:PL 1/1:2,3:6:9:120,9,0 1/1:0,4:4:12:161,12,0 1/1:3,4:7:12:157,12,0 1/1:2,4:6:12:152,12,0 +chr14 92923670 . T G 31.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.447;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.4606;MLEAC=2;MLEAF=0.250;MQ=28.47;MQ0=0;MQRankSum=0.372;QD=0.75;ReadPosRankSum=-2.134;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,3:23:42:42,0,360 0/0:15,1:16:2:0,2,203 0/0:24,1:25:12:0,12,364 0/1:17,2:19:29:29,0,273 +chr14 93117961 . A C 67.13 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.246;DP=253;Dels=0.00;FS=85.678;HaplotypeScore=5.8820;MLEAC=1;MLEAF=0.125;MQ=38.05;MQ0=0;MQRankSum=0.161;QD=1.03;ReadPosRankSum=-2.768;SB=-6.548e+00 GT:AD:DP:GQ:PL 0/0:56,5:61:15:0,15,1699 0/1:57,8:65:99:102,0,1707 0/0:62,5:68:0:0,0,1673 0/0:58,1:59:99:0,104,1754 +chr14 93170663 . T C 37.04 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.527;DP=172;Dels=0.01;FS=26.016;HaplotypeScore=13.6527;MLEAC=1;MLEAF=0.125;MQ=19.29;MQ0=0;MQRankSum=1.145;QD=0.88;ReadPosRankSum=-1.743;SB=-3.192e+00 GT:AD:DP:GQ:PL 0/0:43,1:44:26:0,26,469 0/0:37,2:41:14:0,14,308 0/0:43,0:44:48:0,48,482 0/1:37,4:42:73:73,0,204 +chr14 93170897 . G C 44 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.989;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7041;MLEAC=1;MLEAF=0.125;MQ=18.90;MQ0=0;MQRankSum=1.539;QD=1.83;ReadPosRankSum=-2.888;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:39:0,39,343 0/0:21,1:22:21:0,21,187 0/0:19,0:19:27:0,27,249 0/1:20,4:24:80:80,0,121 +chr14 93404737 rs8006516 C T 773.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.615;DB;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=3.0959;MLEAC=3;MLEAF=0.375;MQ=30.91;MQ0=0;MQRankSum=-2.158;QD=8.50;ReadPosRankSum=0.503;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:36,0:36:84:0,84,1036 0/1:20,10:31:99:237,0,394 0/1:25,7:32:99:184,0,434 0/1:11,16:27:99:396,0,108 +chr14 93429074 . G A 69.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.422;DP=84;Dels=0.02;FS=63.566;HaplotypeScore=7.9936;MLEAC=3;MLEAF=0.375;MQ=33.10;MQ0=0;MQRankSum=-1.935;QD=1.20;ReadPosRankSum=1.323;SB=-2.283e+00 GT:AD:DP:GQ:PL 0/1:11,2:13:30:30,0,311 0/1:17,2:19:39:39,0,289 0/0:24,2:26:4:0,4,707 0/1:21,3:24:42:42,0,397 +chr14 93652531 . A G 171.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.908;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.5406;MLEAC=3;MLEAF=0.375;MQ=24.35;MQ0=0;MQRankSum=0.954;QD=1.21;ReadPosRankSum=2.925;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:54,9:63:99:107,0,365 0/0:47,4:51:27:0,27,351 0/1:52,6:58:97:97,0,490 0/1:19,2:21:10:10,0,187 +chr14 94007068 . A C 218.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.417;DP=158;Dels=0.01;FS=91.679;HaplotypeScore=9.7677;MLEAC=3;MLEAF=0.375;MQ=34.41;MQ0=0;MQRankSum=-3.744;QD=1.74;ReadPosRankSum=1.429;SB=0.577 GT:AD:DP:GQ:PL 0/1:24,7:31:99:136,0,688 0/1:38,5:43:44:44,0,991 0/1:44,7:51:82:82,0,1203 0/0:30,2:32:14:0,14,882 +chr14 94088587 rs4905081 G A 2368.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.982;DB;DP=177;Dels=0.00;FS=3.553;HaplotypeScore=2.8835;MLEAC=5;MLEAF=0.625;MQ=30.70;MQ0=0;MQRankSum=-3.232;QD=13.38;ReadPosRankSum=1.460;SB=-6.220e+02 GT:AD:DP:GQ:PL 0/1:25,20:45:99:542,0,571 1/1:3,41:44:76:1120,76,0 0/1:31,18:49:99:450,0,829 0/1:25,14:39:99:302,0,570 +chr14 94156515 . C T 55.12 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.550;DP=164;Dels=0.00;FS=30.686;HaplotypeScore=1.2441;MLEAC=2;MLEAF=0.250;MQ=32.06;MQ0=0;MQRankSum=-0.116;QD=0.73;ReadPosRankSum=-0.108;SB=-3.923e-01 GT:AD:DP:GQ:PL 0/0:40,0:40:84:0,84,1041 0/1:38,5:43:82:82,0,642 0/0:47,1:48:70:0,70,1133 0/1:31,2:33:14:14,0,570 +chr14 94466081 rs4905137 C G 588.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.813;DB;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9812;MLEAC=3;MLEAF=0.375;MQ=34.03;MQ0=0;MQRankSum=-0.692;QD=9.06;ReadPosRankSum=0.271;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,5:15:99:142,0,365 0/0:21,0:21:60:0,60,686 0/1:11,10:21:99:315,0,335 0/1:21,8:29:99:175,0,542 +chr14 94510478 . C G 146.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.612;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=8.3382;MLEAC=4;MLEAF=0.500;MQ=32.31;MQ0=0;MQRankSum=-7.168;QD=1.00;ReadPosRankSum=5.295;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,13:46:96:96,0,1028 0/1:24,9:33:54:54,0,756 0/1:40,8:48:32:32,0,1077 0/1:14,4:18:6:6,0,338 +chr14 94700064 . A G 99.14 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.327;DP=112;Dels=0.01;FS=20.381;HaplotypeScore=3.4601;MLEAC=3;MLEAF=0.375;MQ=28.20;MQ0=0;MQRankSum=2.560;QD=1.24;ReadPosRankSum=-2.149;SB=1.11 GT:AD:DP:GQ:PL 0/1:22,2:25:27:27,0,246 0/0:31,1:32:12:0,12,340 0/1:36,5:42:91:91,0,371 0/1:11,1:12:24:24,0,53 +chr14 94733251 . A T 41.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.306;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.2297;MLEAC=2;MLEAF=0.250;MQ=29.92;MQ0=0;MQRankSum=-1.061;QD=1.26;ReadPosRankSum=2.286;SB=18.86 GT:AD:DP:GQ:PL 0/0:18,0:19:27:0,27,303 0/1:8,4:13:71:71,0,100 0/1:19,1:20:10:10,0,296 0/0:4,0:5:6:0,6,75 +chr14 94733474 rs1950644 A T 119.35 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.020;DB;DP=16;Dels=0.00;FS=2.663;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=32.72;MQ0=0;MQRankSum=-0.227;QD=14.92;ReadPosRankSum=1.359;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,3:5:58:85,0,58 0/0:8,0:8:18:0,18,222 0/1:1,2:3:18:73,0,18 ./. +chr14 94930980 rs11628686 A G 345.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=3.660;DB;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2478;MLEAC=2;MLEAF=0.250;MQ=35.39;MQ0=0;MQRankSum=1.070;QD=9.60;ReadPosRankSum=-0.828;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,5:17:99:159,0,354 0/1:12,7:19:99:228,0,320 0/0:24,0:24:60:0,60,794 0/0:9,0:9:24:0,24,291 +chr14 94985735 rs59407226 C G 99.51 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.380;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.6164;MLEAC=4;MLEAF=1.00;MQ=19.99;MQ0=0;MQRankSum=1.380;QD=14.22;ReadPosRankSum=-0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:66,6,0 ./. 1/1:1,2:3:6:68,6,0 ./. +chr14 95035909 . G A 48.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.811;DP=103;Dels=0.00;FS=10.083;HaplotypeScore=6.6555;MLEAC=3;MLEAF=0.375;MQ=28.58;MQ0=0;MQRankSum=0.709;QD=0.63;ReadPosRankSum=0.556;SB=-2.538e-01 GT:AD:DP:GQ:PL 0/1:21,3:25:33:33,0,443 0/0:26,0:27:45:0,45,510 0/1:23,3:26:44:44,0,374 0/1:23,2:25:14:14,0,293 +chr14 95217612 rs9323915 A G 41.26 . AC=2;AF=0.500;AN=4;BaseQRankSum=-0.736;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=20.16;MQ0=0;MQRankSum=-0.736;QD=20.63;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:76,6,0 0/0:2,0:2:3:0,3,39 ./. ./. +chr14 95234991 . T G 228.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.094;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=11.1882;MLEAC=3;MLEAF=0.375;MQ=29.28;MQ0=0;MQRankSum=2.091;QD=3.32;ReadPosRankSum=-0.114;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:20,3:23:85:85,0,197 0/0:23,1:24:18:0,18,194 0/1:19,3:22:52:52,0,153 0/1:18,5:23:99:135,0,179 +chr14 95677306 . T G 31.38 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.052;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.8643;MLEAC=3;MLEAF=0.375;MQ=30.12;MQ0=0;MQRankSum=-1.521;QD=0.83;ReadPosRankSum=3.162;SB=5.98 GT:AD:DP:GQ:PL 0/1:12,2:14:35:35,0,137 0/1:11,3:14:28:28,0,129 0/1:9,1:10:11:11,0,104 0/0:12,0:13:18:0,18,207 +chr14 95905285 . G C 43.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.749;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=7.2423;MLEAC=2;MLEAF=0.250;MQ=29.79;MQ0=0;MQRankSum=-0.472;QD=0.76;ReadPosRankSum=0.864;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:27:0,27,324 0/0:29,0:29:39:0,39,458 0/1:29,3:32:28:28,0,489 0/1:21,3:24:57:57,0,223 +chr14 96656067 rs11626409 T G 48.01 . AC=4;AF=1.00;AN=4;DB;DP=13;Dels=0.00;FS=3.522;HaplotypeScore=0.3325;MLEAC=4;MLEAF=1.00;MQ=16.14;MQ0=0;QD=12.00;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:42,3,0 ./. ./. 1/1:1,1:2:3:39,3,0 +chr14 96706881 . C T 71.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.324;DP=202;Dels=0.00;FS=41.624;HaplotypeScore=8.3543;MLEAC=2;MLEAF=0.250;MQ=34.86;MQ0=0;MQRankSum=-3.542;QD=0.73;ReadPosRankSum=-0.559;SB=-1.870e+00 GT:AD:DP:GQ:PL 0/1:54,6:60:47:47,0,1562 0/0:45,5:50:12:0,12,1191 0/0:53,1:54:81:0,81,1416 0/1:29,7:37:66:66,0,559 +chr14 96771959 rs2289622 A G 2786.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.020;DB;DP=111;Dels=0.00;FS=15.321;HaplotypeScore=0.9513;MLEAC=8;MLEAF=1.00;MQ=30.15;MQ0=0;MQRankSum=1.577;QD=25.11;ReadPosRankSum=1.237;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:8,21:29:63:745,63,0 1/1:5,25:30:52:832,52,0 1/1:6,27:33:81:950,81,0 1/1:8,11:19:24:299,24,0 +chr14 96811020 . A T 174.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.146;DP=50;Dels=0.00;FS=19.799;HaplotypeScore=14.3332;MLEAC=5;MLEAF=0.625;MQ=21.66;MQ0=0;MQRankSum=-0.095;QD=3.89;ReadPosRankSum=2.336;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/1:11,6:17:73:73,0,112 0/1:13,3:16:57:57,0,75 1/1:7,4:12:9:89,9,0 0/0:4,1:5:3:0,3,23 +chr14 96811843 rs10145015 A G 97.76 . AC=4;AF=1.00;AN=4;DB;DP=5;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=27.06;MQ0=0;QD=24.44;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:40,3,0 ./. 1/1:0,3:3:9:92,9,0 ./. +chr14 97022120 . G A 33.34 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.015;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.4072;MLEAC=2;MLEAF=0.250;MQ=22.18;MQ0=0;MQRankSum=-1.281;QD=0.51;ReadPosRankSum=0.356;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:38,4:42:67:67,0,403 0/0:30,3:33:42:0,42,429 0/0:35,0:35:48:0,48,476 0/1:18,6:24:4:4,0,172 +chr14 97299729 . A T 79.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.549;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.4567;MLEAC=2;MLEAF=0.250;MQ=29.13;MQ0=0;MQRankSum=1.555;QD=2.03;ReadPosRankSum=1.784;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,2:20:52:52,0,111 0/0:16,0:16:12:0,12,128 0/1:16,3:19:68:68,0,123 0/0:5,0:5:9:0,9,87 +chr14 100161824 . T A 51.44 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.583;DP=164;Dels=0.00;FS=7.025;HaplotypeScore=2.5369;MLEAC=2;MLEAF=0.250;MQ=30.64;MQ0=0;MQRankSum=-1.335;QD=0.83;ReadPosRankSum=1.509;SB=-2.154e+00 GT:AD:DP:GQ:PL 0/1:42,5:47:74:74,0,489 0/0:56,0:56:57:0,57,549 0/0:43,2:46:6:0,6,542 0/1:14,1:15:18:18,0,47 +chr14 100165694 . C A 47.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.146;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=23.3512;MLEAC=2;MLEAF=0.250;MQ=23.25;MQ0=0;MQRankSum=0.387;QD=0.85;ReadPosRankSum=-1.194;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,0:28:27:0,27,295 0/1:27,3:30:41:51,0,41 0/0:37,0:37:33:0,33,368 0/1:23,3:26:38:38,0,97 +chr14 100357464 . T G 160.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.922;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=18.3240;MLEAC=4;MLEAF=0.500;MQ=29.87;MQ0=0;MQRankSum=-4.809;QD=1.08;ReadPosRankSum=0.998;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:39,7:46:57:57,0,903 0/1:36,7:43:24:24,0,906 0/1:36,8:44:54:54,0,1047 0/1:11,5:16:68:68,0,193 +chr14 100764839 rs12436848 T C 41.01 . AC=4;AF=1.00;AN=4;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=23.78;MQ0=0;QD=20.51;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:35,3,0 ./. ./. 1/1:0,1:1:3:39,3,0 +chr14 100795635 . G T 106.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.096;DP=31;Dels=0.03;FS=5.006;HaplotypeScore=1.3880;MLEAC=2;MLEAF=0.250;MQ=29.71;MQ0=0;MQRankSum=-0.044;QD=5.94;ReadPosRankSum=-1.359;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,28 0/1:6,3:9:33:88,0,33 0/0:10,0:10:15:0,15,153 0/1:5,3:8:22:59,0,22 +chr14 101200645 rs1802710 T C 1253.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.360;DB;DP=110;Dels=0.03;FS=10.111;HaplotypeScore=8.3915;MLEAC=4;MLEAF=0.500;MQ=31.99;MQ0=0;MQRankSum=-0.676;QD=13.93;ReadPosRankSum=0.268;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:7,28:35:59:976,59,0 0/0:20,0:20:45:0,45,545 0/1:20,8:28:99:188,0,449 0/1:19,5:24:99:138,0,250 +chr14 101411953 rs12433065 A G 1848.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.563;DB;DP=303;Dels=0.00;FS=0.000;HaplotypeScore=0.9838;MLEAC=3;MLEAF=0.375;MQ=36.13;MQ0=0;MQRankSum=-3.705;QD=10.27;ReadPosRankSum=2.676;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:42,30:72:99:914,0,1272 0/0:123,0:123:99:0,361,4703 0/1:60,30:90:99:842,0,1963 0/1:13,5:18:99:136,0,326 +chr14 101448335 . G A 100.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-6.196;DP=177;Dels=0.00;FS=46.461;HaplotypeScore=4.1436;MLEAC=3;MLEAF=0.375;MQ=24.35;MQ0=0;MQRankSum=-0.225;QD=1.55;ReadPosRankSum=2.022;SB=0.215 GT:AD:DP:GQ:PL 0/0:44,6:50:0:0,0,457 0/1:45,11:56:90:90,0,519 0/0:59,3:62:27:0,27,921 0/1:6,3:9:50:50,0,112 +chr14 101514306 . T G 284.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.507;DP=62;Dels=0.03;FS=33.566;HaplotypeScore=3.2099;MLEAC=4;MLEAF=0.500;MQ=27.27;MQ0=0;MQRankSum=-1.172;QD=4.59;ReadPosRankSum=2.250;SB=0.342 GT:AD:DP:GQ:PL 0/1:9,3:12:44:44,0,86 0/1:12,5:17:83:83,0,91 0/1:15,6:21:99:140,0,112 0/1:7,3:10:60:60,0,112 +chr14 101526235 . A G 99.98 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.992;DP=65;Dels=0.05;FS=5.370;HaplotypeScore=19.2738;MLEAC=3;MLEAF=0.375;MQ=17.54;MQ0=0;MQRankSum=1.477;QD=1.82;ReadPosRankSum=0.584;SB=20.95 GT:AD:DP:GQ:PL 1/1:11,6:19:6:64,6,0 0/1:16,2:18:16:30,0,16 0/1:14,2:16:16:50,0,16 0/0:8,1:9:6:0,6,47 +chr14 102028225 . A C 94.34 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.734;DP=65;Dels=0.02;FS=59.278;HaplotypeScore=11.5333;MLEAC=3;MLEAF=0.375;MQ=27.57;MQ0=0;MQRankSum=-1.296;QD=1.97;ReadPosRankSum=0.328;SB=-5.732e-01 GT:AD:DP:GQ:PL 0/1:9,5:14:83:92,0,83 0/1:15,1:16:25:25,0,95 0/0:16,1:17:2:0,2,334 0/1:14,3:17:18:18,0,150 +chr14 102028303 . G C 110.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.590;DP=84;Dels=0.00;FS=27.750;HaplotypeScore=3.2333;MLEAC=3;MLEAF=0.375;MQ=35.58;MQ0=0;MQRankSum=1.237;QD=1.72;ReadPosRankSum=0.423;SB=-2.512e+00 GT:AD:DP:GQ:PL 0/1:16,1:17:1:1,0,380 0/0:19,1:20:19:0,19,509 0/1:23,5:28:89:89,0,650 0/1:16,3:19:60:60,0,301 +chr14 102359324 rs8007592 G C 591.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.668;DB;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.2497;MLEAC=3;MLEAF=0.375;MQ=34.29;MQ0=0;MQRankSum=-1.907;QD=10.96;ReadPosRankSum=1.304;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,9:23:99:250,0,357 0/0:27,0:27:72:0,72,911 0/1:10,12:22:99:336,0,258 0/1:7,2:9:49:49,0,200 +chr14 102449775 . T G 286.24 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.277;DP=85;Dels=0.01;FS=126.269;HaplotypeScore=4.7524;MLEAC=4;MLEAF=0.500;MQ=34.26;MQ0=0;MQRankSum=-2.353;QD=3.37;ReadPosRankSum=1.333;SB=0.934 GT:AD:DP:GQ:PL 0/1:17,6:24:99:148,0,361 0/1:15,7:22:99:157,0,350 0/1:20,2:22:15:15,0,479 0/1:15,1:16:8:8,0,305 +chr14 102463407 rs12893215 A G 156.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.861;DB;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.8292;MLEAC=1;MLEAF=0.125;MQ=34.75;MQ0=0;MQRankSum=-0.997;QD=7.48;ReadPosRankSum=0.820;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:14,7:21:99:193,0,426 0/0:25,0:25:72:0,72,894 0/0:33,0:33:90:0,90,1150 0/0:21,1:22:63:0,63,786 +chr14 102467717 . T G 102.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.967;DP=179;Dels=0.03;FS=2.182;HaplotypeScore=8.9984;MLEAC=2;MLEAF=0.250;MQ=35.83;MQ0=0;MQRankSum=-2.449;QD=1.27;ReadPosRankSum=0.429;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:47,0:47:81:0,81,954 0/0:48,1:49:73:0,73,1038 0/1:36,5:41:76:76,0,543 0/1:32,5:37:68:68,0,459 +chr14 102474516 . C A 102.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.250;DP=108;Dels=0.02;FS=41.965;HaplotypeScore=11.0341;MLEAC=3;MLEAF=0.375;MQ=24.38;MQ0=0;MQRankSum=-3.856;QD=1.22;ReadPosRankSum=2.646;SB=-8.697e-01 GT:AD:DP:GQ:PL 0/0:20,3:23:5:0,5,320 0/1:26,5:31:11:11,0,346 0/1:16,8:24:82:82,0,332 0/1:20,7:28:51:51,0,266 +chr14 102493374 . T C 186.82 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.089;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.7176;MLEAC=4;MLEAF=0.500;MQ=31.32;MQ0=0;MQRankSum=-1.683;QD=4.79;ReadPosRankSum=1.196;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,5:15:93:93,0,252 0/1:7,5:12:93:100,0,93 0/1:7,1:9:13:13,0,117 0/1:2,1:3:17:23,0,17 +chr14 102515865 . A G 73.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.413;DP=92;Dels=0.01;FS=36.428;HaplotypeScore=4.3134;MLEAC=2;MLEAF=0.250;MQ=31.95;MQ0=0;MQRankSum=-0.516;QD=1.53;ReadPosRankSum=0.178;SB=0.434 GT:AD:DP:GQ:PL 0/1:21,4:25:57:57,0,475 0/0:25,0:25:48:0,48,555 0/0:18,1:19:45:0,45,519 0/1:18,3:22:58:58,0,393 +chr14 102805216 . G T 72.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.082;DP=162;Dels=0.01;FS=34.925;HaplotypeScore=7.1524;MLEAC=2;MLEAF=0.250;MQ=31.52;MQ0=0;MQRankSum=-1.646;QD=1.04;ReadPosRankSum=0.580;SB=-1.878e+00 GT:AD:DP:GQ:PL 0/1:36,4:40:50:50,0,573 0/0:43,2:45:14:0,14,832 0/0:45,0:47:78:0,78,958 0/1:23,6:29:64:64,0,489 +chr14 102842991 . C T 39.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.060;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.0454;MLEAC=3;MLEAF=0.375;MQ=35.39;MQ0=0;MQRankSum=-2.142;QD=0.92;ReadPosRankSum=0.220;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,4:15:69:69,0,192 0/1:16,1:17:3:3,0,362 0/1:9,1:11:6:6,0,194 0/0:5,0:5:12:0,12,157 +chr14 102881152 . G A 555.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.918;DP=99;Dels=0.01;FS=10.625;HaplotypeScore=8.2986;MLEAC=4;MLEAF=0.500;MQ=27.39;MQ0=0;MQRankSum=0.807;QD=5.61;ReadPosRankSum=0.395;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,8:25:99:200,0,224 0/1:18,8:26:99:173,0,273 0/1:27,5:32:99:99,0,397 0/1:10,5:15:99:126,0,143 +chr14 102898212 . T C 59.91 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.074;DP=147;Dels=0.01;FS=0.000;HaplotypeScore=6.7270;MLEAC=2;MLEAF=0.250;MQ=32.59;MQ0=0;MQRankSum=-1.064;QD=0.75;ReadPosRankSum=-2.378;SB=-1.411e-02 GT:AD:DP:GQ:PL 0/0:30,2:32:9:0,9,732 0/1:31,5:36:66:66,0,561 0/1:39,4:43:35:35,0,740 0/0:35,0:35:84:0,84,924 +chr14 102963391 . A T 32.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.695;DP=152;Dels=0.01;FS=2.142;HaplotypeScore=5.6485;MLEAC=1;MLEAF=0.125;MQ=37.22;MQ0=0;MQRankSum=-2.888;QD=0.87;ReadPosRankSum=1.367;SB=-1.160e-02 GT:AD:DP:GQ:PL 0/1:33,5:38:69:69,0,894 0/0:35,3:38:49:0,49,926 0/0:33,1:34:49:0,49,876 0/0:40,1:41:53:0,53,882 +chr14 103357700 . C T 39.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.090;DP=43;Dels=0.02;FS=9.834;HaplotypeScore=5.9099;MLEAC=1;MLEAF=0.125;MQ=29.88;MQ0=0;MQRankSum=-0.619;QD=3.55;ReadPosRankSum=-0.029;SB=0.673 GT:AD:DP:GQ:PL 0/0:8,0:8:15:0,15,195 0/1:8,3:11:75:75,0,94 0/0:13,0:13:30:0,30,356 0/0:10,0:10:15:0,15,178 +chr14 103573213 . C G 44.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.440;DP=91;Dels=0.04;FS=38.879;HaplotypeScore=8.1771;MLEAC=3;MLEAF=0.375;MQ=32.25;MQ0=0;MQRankSum=-2.282;QD=0.62;ReadPosRankSum=0.628;SB=0.172 GT:AD:DP:GQ:PL 0/1:17,2:19:17:17,0,475 0/1:21,3:24:39:39,0,461 0/0:17,1:18:42:0,42,511 0/1:23,3:26:32:32,0,557 +chr14 103879051 . T A 149.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.549;DP=93;Dels=0.02;FS=4.729;HaplotypeScore=5.1255;MLEAC=3;MLEAF=0.375;MQ=27.94;MQ0=0;MQRankSum=1.699;QD=2.17;ReadPosRankSum=0.000;SB=-4.883e-01 GT:AD:DP:GQ:PL 0/1:14,2:16:42:42,0,208 0/0:21,1:22:15:0,15,387 0/1:22,2:24:4:4,0,441 0/1:23,6:29:99:145,0,180 +chr14 103932616 . G A 156.44 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.832;DP=43;Dels=0.00;FS=2.905;HaplotypeScore=0.7419;MLEAC=4;MLEAF=0.500;MQ=30.80;MQ0=0;MQRankSum=-2.225;QD=3.64;ReadPosRankSum=2.989;SB=4.16 GT:AD:DP:GQ:PL 0/1:8,1:10:1:1,0,197 0/1:12,4:17:68:68,0,113 0/1:7,5:13:66:97,0,66 1/1:2,1:3:3:31,3,0 +chr14 104143697 . G A 30.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.348;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=23.2907;MLEAC=4;MLEAF=0.500;MQ=26.13;MQ0=0;MQRankSum=-0.732;QD=0.55;ReadPosRankSum=-0.278;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:18:18,0,280 0/1:11,3:14:21:21,0,176 0/1:15,3:18:20:20,0,303 0/1:6,1:7:14:14,0,81 +chr14 104192976 . T G 50.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.321;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.1741;MLEAC=3;MLEAF=0.375;MQ=27.75;MQ0=0;MQRankSum=-0.084;QD=1.16;ReadPosRankSum=-0.839;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:33:33,0,202 0/1:15,3:18:24:24,0,196 0/0:11,0:11:30:0,30,307 0/1:10,2:12:37:37,0,289 +chr14 104198984 . T A 49.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.221;DP=96;Dels=0.00;FS=2.753;HaplotypeScore=9.1591;MLEAC=3;MLEAF=0.375;MQ=31.62;MQ0=0;MQRankSum=-2.249;QD=0.70;ReadPosRankSum=-1.607;SB=-4.143e+01 GT:AD:DP:GQ:PL 0/0:23,2:25:51:0,51,607 0/1:18,2:20:23:23,0,352 0/1:26,4:30:18:18,0,593 0/1:18,3:21:52:52,0,355 +chr14 104202304 rs2295145 G A 528.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.781;DB;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=3.4548;MLEAC=3;MLEAF=0.375;MQ=37.28;MQ0=0;MQRankSum=0.542;QD=15.11;ReadPosRankSum=-0.595;SB=-4.199e+01 GT:AD:DP:GQ:PL 0/0:10,0:10:24:0,24,302 0/1:6,4:10:99:111,0,147 0/1:5,6:11:99:212,0,136 0/1:6,7:13:96:249,0,96 +chr14 104220529 . A G 150.50 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.247;DP=110;Dels=0.04;FS=29.312;HaplotypeScore=39.8459;MLEAC=2;MLEAF=0.250;MQ=25.42;MQ0=0;MQRankSum=-0.762;QD=1.37;ReadPosRankSum=2.636;SB=28.66 GT:AD:DP:GQ:PL 0/1:16,5:24:40:70,0,40 0/1:19,7:30:99:112,0,252 0/1:23,4:29:4:4,0,196 0/1:20,1:23:3:3,0,185 +chr14 104573578 . G C 78.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.883;DP=47;Dels=0.02;FS=54.719;HaplotypeScore=5.2257;MLEAC=3;MLEAF=0.375;MQ=25.46;MQ0=0;MQRankSum=-1.717;QD=2.19;ReadPosRankSum=1.717;SB=2.83 GT:AD:DP:GQ:PL 0/1:7,2:9:53:53,0,123 0/1:11,2:13:22:22,0,141 0/1:9,4:13:47:47,0,119 0/0:10,1:11:15:0,15,145 +chr14 104640056 . C A 36.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.443;DP=42;Dels=0.00;FS=5.282;HaplotypeScore=2.2207;MLEAC=2;MLEAF=0.250;MQ=28.25;MQ0=0;MQRankSum=0.367;QD=1.37;ReadPosRankSum=-0.318;SB=0.908 GT:AD:DP:GQ:PL 0/0:11,0:12:33:0,33,374 0/1:12,2:14:30:30,0,169 0/0:3,0:3:9:0,9,103 0/1:11,2:13:48:48,0,152 +chr14 104640239 . G T 80.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.479;DP=25;Dels=0.00;FS=2.823;HaplotypeScore=1.8723;MLEAC=4;MLEAF=0.500;MQ=27.28;MQ0=0;MQRankSum=-0.887;QD=4.01;ReadPosRankSum=0.099;SB=-1.134e-02 GT:AD:DP:GQ:PL 1/1:4,1:5:3:32,3,0 0/0:5,0:5:6:0,6,47 0/1:6,2:8:52:52,0,73 0/1:5,2:7:39:39,0,60 +chr14 105070791 rs3803313 G T 31.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.754;DB;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.3000;MLEAC=4;MLEAF=1.00;MQ=12.38;MQ0=0;MQRankSum=1.754;QD=3.88;ReadPosRankSum=-0.550;SB=-2.901e+01 GT:AD:DP:GQ:PL ./. 1/1:3,1:4:3:32,3,0 1/1:2,2:4:3:32,3,0 ./. +chr14 105222076 . A G 42.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.781;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=3.5343;MLEAC=2;MLEAF=0.250;MQ=28.30;MQ0=0;MQRankSum=-2.077;QD=1.25;ReadPosRankSum=1.442;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:18:0,18,211 0/1:17,3:20:28:28,0,319 0/0:26,2:28:4:0,4,248 0/1:11,3:14:55:55,0,178 +chr14 105242140 . C A 121 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.493;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7384;MLEAC=3;MLEAF=0.375;MQ=30.68;MQ0=0;MQRankSum=-1.916;QD=2.09;ReadPosRankSum=-0.131;SB=-1.111e-01 GT:AD:DP:GQ:PL 0/0:19,0:19:33:0,33,424 0/1:14,5:19:99:113,0,228 0/1:19,4:23:36:36,0,400 0/1:14,2:16:15:15,0,328 +chr14 105258893 rs2494749 A G 1098.68 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.354;DB;DP=90;Dels=0.01;FS=7.304;HaplotypeScore=1.2314;MLEAC=8;MLEAF=1.00;MQ=29.95;MQ0=0;MQRankSum=0.702;QD=12.21;ReadPosRankSum=-0.733;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:23,1:24:3:40,3,0 1/1:8,10:18:30:326,30,0 1/1:14,11:25:30:372,30,0 1/1:9,13:22:11:399,11,0 +chr14 105297232 rs10150681 T G 1531.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.913;DB;DP=62;Dels=0.02;FS=5.584;HaplotypeScore=1.5883;MLEAC=8;MLEAF=1.00;MQ=27.37;MQ0=0;MQRankSum=2.509;QD=24.71;ReadPosRankSum=0.286;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:3,10:13:30:331,30,0 1/1:3,11:14:33:360,33,0 1/1:1,15:16:45:481,45,0 1/1:5,13:18:36:399,36,0 +chr14 105350355 rs2841236 A G 586.64 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.254;DB;DP=42;Dels=0.00;FS=18.695;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=34.95;MQ0=0;MQRankSum=-1.801;QD=13.97;ReadPosRankSum=-0.416;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,9:10:27:361,27,0 0/1:6,1:7:16:16,0,165 0/1:5,6:11:99:168,0,134 0/1:10,4:14:87:87,0,304 +chr14 105382003 rs2919622 T C 53.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=30.55;MQ0=0;MQRankSum=0.736;QD=17.67;ReadPosRankSum=-0.736;SB=-4.000e+01 GT:AD:DP:GQ:PL 1/1:1,1:2:3:43,3,0 ./. ./. 1/1:0,1:1:3:43,3,0 +chr14 105406372 rs61421370 C T 4324.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.355;DB;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=4.9433;MLEAC=7;MLEAF=0.875;MQ=35.75;MQ0=0;MQRankSum=-3.072;QD=22.76;ReadPosRankSum=2.429;SB=-1.865e+03 GT:AD:DP:GQ:PL 0/1:31,20:52:99:576,0,980 1/1:6,39:45:43:1208,43,0 1/1:5,43:48:99:1515,114,0 1/1:11,34:45:90:1025,90,0 +chr14 105412066 rs77154428 C T 85.21 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.723;DB;DP=207;Dels=0.01;FS=7.868;HaplotypeScore=1.4103;MLEAC=3;MLEAF=0.750;MQ=7.49;MQ0=0;MQRankSum=2.823;QD=0.79;ReadPosRankSum=-0.657;SB=-6.267e-03 GT:AD:DP:GQ:PL 0/1:32,23:58:30:30,0,54 1/1:7,43:50:9:92,9,0 ./. ./. +chr14 105418194 rs78447535 A G 103.48 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.797;DB;DP=162;Dels=0.02;FS=47.861;HaplotypeScore=2.2598;MLEAC=6;MLEAF=0.750;MQ=9.75;MQ0=0;MQRankSum=2.248;QD=0.64;ReadPosRankSum=-0.333;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,12:39:12:12,0,71 1/1:21,20:41:6:70,6,0 0/1:20,23:43:11:11,0,70 1/1:15,21:36:6:54,6,0 +chr14 105418347 . C A 48.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.110;DP=160;Dels=0.00;FS=6.485;HaplotypeScore=1.4496;MLEAC=2;MLEAF=0.250;MQ=8.07;MQ0=0;MQRankSum=2.825;QD=1.40;ReadPosRankSum=-2.032;SB=-1.968e+01 GT:AD:DP:GQ:PL 0/0:63,0:63:6:0,6,77 0/0:32,0:32:6:0,6,52 1/1:31,4:35:9:90,9,0 0/0:28,2:30:3:0,3,22 +chr14 105618264 . C A 32.05 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.137;DP=51;Dels=0.02;FS=22.749;HaplotypeScore=2.4495;MLEAC=4;MLEAF=0.500;MQ=30.59;MQ0=0;MQRankSum=-1.006;QD=0.63;ReadPosRankSum=-0.091;SB=-2.819e+00 GT:AD:DP:GQ:PL 0/1:8,1:9:13:13,0,135 0/1:16,1:17:2:2,0,334 0/1:12,1:13:11:11,0,206 0/1:9,2:11:18:46,0,18 +chr14 105622223 . C A 57.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.257;DP=42;Dels=0.02;FS=11.903;HaplotypeScore=5.3380;MLEAC=2;MLEAF=0.250;MQ=22.65;MQ0=0;MQRankSum=1.380;QD=2.29;ReadPosRankSum=1.586;SB=2.19 GT:AD:DP:GQ:PL 0/1:9,3:12:41:41,0,95 0/0:10,0:10:15:0,15,131 0/1:9,3:12:57:57,0,153 0/0:7,0:7:6:0,6,80 +chr14 105684170 . A T 80.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.790;DP=64;Dels=0.00;FS=2.450;HaplotypeScore=3.8225;MLEAC=3;MLEAF=0.375;MQ=29.10;MQ0=0;MQRankSum=-2.297;QD=1.91;ReadPosRankSum=2.348;SB=-3.868e-03 GT:AD:DP:GQ:PL 0/1:9,1:10:6:6,0,223 0/1:14,4:18:53:53,0,212 0/0:22,0:22:36:0,36,423 0/1:9,5:14:63:63,0,109 +chr14 105695257 . G C 979.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.618;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3409;MLEAC=4;MLEAF=0.500;MQ=32.12;MQ0=0;MQRankSum=0.092;QD=5.66;ReadPosRankSum=1.516;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:34,8:42:99:180,0,827 0/1:36,11:47:99:292,0,753 0/1:27,10:37:99:251,0,633 0/1:34,12:47:99:299,0,655 +chr14 105946842 rs4983419 A G 36.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=8;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=15.77;MQ0=0;MQRankSum=1.026;QD=5.14;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:5,1:6:3:40,3,0 1/1:0,1:1:3:29,3,0 ./. +chr14 106304563 rs56235597 G A 69.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.798;DB;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=2.9366;MLEAC=3;MLEAF=0.375;MQ=24.08;MQ0=0;MQRankSum=1.338;QD=2.79;ReadPosRankSum=-2.717;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:7,1:8:3:39,3,0 0/0:10,0:10:9:0,9,105 0/1:7,2:9:57:57,0,102 0/1:6,1:7:17:17,0,94 +chr14 106347467 rs2516984 A C 1127.29 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.966;DB;DP=73;Dels=0.04;FS=38.873;HaplotypeScore=0.4833;MLEAC=8;MLEAF=1.00;MQ=24.65;MQ0=0;MQRankSum=2.423;QD=15.44;ReadPosRankSum=-0.316;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,18:20:30:327,30,0 1/1:6,15:21:27:314,27,0 1/1:2,2:4:6:54,6,0 1/1:5,20:25:45:471,45,0 +chr14 106375638 rs2857347 T C 180.44 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.470;DB;DP=16;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=17.45;MQ0=0;MQRankSum=1.470;QD=12.89;ReadPosRankSum=0.401;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:3:25,3,0 1/1:2,5:7:9:76,9,0 ./. 1/1:0,5:5:12:116,12,0 +chr14 106518632 . G C 106.28 . AC=4;AF=0.667;AN=6;BaseQRankSum=-3.770;DP=117;Dels=0.01;FS=81.277;HaplotypeScore=9.3365;MLEAC=4;MLEAF=0.667;MQ=13.00;MQ0=0;MQRankSum=3.232;QD=1.10;ReadPosRankSum=-0.871;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,4:30:25:69,0,25 0/1:31,3:34:40:40,0,42 ./. 1/1:29,3:32:3:36,3,0 +chr14 106539489 . G C 62.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.843;DP=137;Dels=0.00;FS=39.112;HaplotypeScore=3.1019;MLEAC=2;MLEAF=0.250;MQ=15.04;MQ0=0;MQRankSum=1.677;QD=0.87;ReadPosRankSum=1.171;SB=1.35 GT:AD:DP:GQ:PL 0/0:20,0:21:15:0,15,130 0/1:36,7:43:54:54,0,193 0/1:25,4:29:35:50,0,35 0/0:39,5:44:18:0,18,155 +chr14 106552530 . G A 48.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.223;DP=198;Dels=0.02;FS=35.385;HaplotypeScore=12.1549;MLEAC=3;MLEAF=0.375;MQ=13.49;MQ0=0;MQRankSum=3.259;QD=0.35;ReadPosRankSum=1.694;SB=-6.961e-01 GT:AD:DP:GQ:PL 0/1:36,4:40:44:44,0,129 0/0:56,2:58:18:0,18,168 0/1:41,2:43:41:41,0,122 0/1:51,3:54:5:5,0,119 +chr14 106579111 . T G 42.30 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.326;DP=79;Dels=0.01;FS=62.605;HaplotypeScore=5.4078;MLEAC=3;MLEAF=0.375;MQ=11.37;MQ0=0;MQRankSum=2.987;QD=0.81;ReadPosRankSum=-1.430;SB=3.99 GT:AD:DP:GQ:PL 0/0:16,1:17:3:0,3,32 0/1:20,6:26:37:37,0,91 0/0:9,0:9:3:0,3,36 0/1:22,4:26:16:44,0,16 +chr14 106622103 . A T 97.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.205;DP=210;Dels=0.00;FS=97.691;HaplotypeScore=5.1358;MLEAC=3;MLEAF=0.375;MQ=11.41;MQ0=0;MQRankSum=2.346;QD=0.61;ReadPosRankSum=2.970;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:56,4:60:20:52,0,20 0/0:46,4:50:6:0,6,51 0/1:46,4:50:25:25,0,35 0/1:46,4:50:42:63,0,42 +chr14 106691309 rs17710272 G T 55.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.700;DB;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=0.250;MQ=36.93;MQ0=0;MQRankSum=-1.585;QD=1.43;ReadPosRankSum=-0.495;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,1:22:27:0,27,684 0/0:28,0:28:69:0,69,908 0/1:22,2:24:23:23,0,629 0/1:10,5:15:74:74,0,331 +chr14 106721271 rs6576140 A C 67.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=4.697;DB;DP=50;Dels=0.00;FS=85.475;HaplotypeScore=4.5792;MLEAC=6;MLEAF=1.00;MQ=10.73;MQ0=0;MQRankSum=2.711;QD=1.82;ReadPosRankSum=3.047;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,5:7:3:39,3,0 1/1:8,8:16:3:39,3,0 1/1:6,8:14:3:24,3,0 ./. +chr14 106733437 rs112335453 G C 243.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.507;DB;DP=215;Dels=0.01;FS=3.542;HaplotypeScore=18.1554;MLEAC=3;MLEAF=0.375;MQ=21.09;MQ0=0;MQRankSum=0.048;QD=1.50;ReadPosRankSum=0.490;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/0:51,0:51:66:0,66,644 0/1:34,18:52:99:182,0,396 0/1:50,8:58:42:42,0,705 0/1:43,8:51:63:63,0,307 +chr14 106780848 . G A 82.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.450;DP=148;Dels=0.01;FS=2.477;HaplotypeScore=2.0568;MLEAC=4;MLEAF=0.500;MQ=8.90;MQ0=0;MQRankSum=0.738;QD=0.77;ReadPosRankSum=3.872;SB=-5.515e+01 GT:AD:DP:GQ:PL 0/1:22,6:29:17:53,0,17 0/0:40,0:40:6:0,6,59 1/1:29,3:33:6:55,6,0 0/1:39,5:45:19:19,0,80 +chr14 106993772 . AG A 101.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.721;DP=111;FS=0.000;HaplotypeScore=68.0747;MLEAC=3;MLEAF=0.375;MQ=15.67;MQ0=0;MQRankSum=-0.725;QD=1.14;RPA=2,1;RU=G;ReadPosRankSum=-1.721;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:18,2:9:10:0,10,63 0/1:25,0:7:3:3,0,27 0/1:23,4:11:9:54,0,9 0/1:25,4:10:40:94,0,40 +chr14 107099188 . G A 92.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.564;DP=122;Dels=0.01;FS=26.497;HaplotypeScore=3.0176;MLEAC=4;MLEAF=0.500;MQ=15.84;MQ0=0;MQRankSum=2.859;QD=0.75;ReadPosRankSum=2.352;SB=-2.236e-01 GT:AD:DP:GQ:PL 0/1:25,1:26:14:14,0,83 0/1:28,2:30:11:11,0,82 0/1:29,4:33:57:57,0,143 0/1:28,4:32:33:52,0,33 +chr14 107113851 rs2072045 C T 2046.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.011;DB;DP=326;Dels=0.00;FS=13.459;HaplotypeScore=5.1304;MLEAC=4;MLEAF=0.500;MQ=26.44;MQ0=0;MQRankSum=0.629;QD=8.90;ReadPosRankSum=2.885;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:11,58:69:44:1165,44,0 0/0:96,0:96:99:0,153,1754 0/1:57,29:86:99:433,0,1021 0/1:41,33:75:99:497,0,432 +chr14 107160069 rs6576212 A G,T 133.72 . AC=3,2;AF=0.375,0.250;AN=8;BaseQRankSum=2.508;DB;DP=122;Dels=0.05;FS=38.054;HaplotypeScore=21.2973;MLEAC=3,2;MLEAF=0.375,0.250;MQ=18.64;MQ0=0;MQRankSum=-2.089;QD=1.10;ReadPosRankSum=1.614;SB=-6.672e+01 GT:AD:DP:GQ:PL 1/2:12,9,2:23:15:111,24,15,88,0,85 0/1:30,6,0:36:21:21,0,441,69,450,519 0/2:24,4,4:32:24:25,24,201,0,158,174 0/1:17,6,2:25:42:56,0,92,42,73,138 +chr14 107170005 rs1141720 T C 1486.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=6.358;DB;DP=421;Dels=0.00;FS=5.774;HaplotypeScore=7.3972;MLEAC=3;MLEAF=0.375;MQ=22.68;MQ0=0;MQRankSum=-1.929;QD=4.68;ReadPosRankSum=2.806;SB=-4.990e+02 GT:AD:DP:GQ:PL 0/0:103,0:103:99:0,195,1959 0/1:41,65:106:99:903,0,489 0/1:89,26:115:99:240,0,1248 0/1:66,31:97:99:387,0,1060 +chr14 107178795 rs10144331 A G 72.76 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.648;DB;DP=94;Dels=0.00;FS=31.189;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=6.50;MQ0=0;MQRankSum=0.127;QD=1.58;ReadPosRankSum=1.479;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,15:19:3:32,3,0 ./. ./. 1/1:2,25:27:9:75,9,0 +chr15 20462613 rs28374902 G C 297.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.586;DB;DP=109;Dels=0.00;FS=1.002;HaplotypeScore=4.7326;MLEAC=3;MLEAF=0.375;MQ=21.78;MQ0=0;MQRankSum=1.227;QD=3.42;ReadPosRankSum=2.578;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/0:15,7:22:12:0,12,117 0/1:22,4:26:81:81,0,266 0/1:26,9:35:99:185,0,242 0/1:21,4:26:74:74,0,177 +chr15 20588497 . C A 124.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.523;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6063;MLEAC=4;MLEAF=0.500;MQ=15.80;MQ0=0;MQRankSum=3.072;QD=1.19;ReadPosRankSum=-2.324;SB=-2.188e-01 GT:AD:DP:GQ:PL 0/1:17,6:23:10:72,0,10 0/1:21,3:24:9:9,0,132 0/1:30,3:33:41:41,0,108 0/1:21,3:24:39:44,0,39 +chr15 22297603 . G A 88.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.298;DP=308;Dels=0.00;FS=23.882;HaplotypeScore=0.2467;MLEAC=3;MLEAF=0.375;MQ=11.86;MQ0=0;MQRankSum=2.731;QD=0.40;ReadPosRankSum=-0.513;SB=-6.867e+00 GT:AD:DP:GQ:PL 0/1:88,1:89:1:1,0,282 0/1:71,2:73:20:20,0,108 0/0:86,0:86:24:0,24,282 0/1:56,4:60:95:107,0,95 +chr15 22298294 . C T 215.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.458;DP=217;Dels=0.00;FS=14.064;HaplotypeScore=20.2207;MLEAC=2;MLEAF=0.250;MQ=18.68;MQ0=0;MQRankSum=-2.778;QD=2.11;ReadPosRankSum=0.195;SB=-5.018e+01 GT:AD:DP:GQ:PL 0/0:55,18:73:18:0,18,688 0/0:42,0:42:36:0,36,362 0/1:39,24:63:99:160,0,377 0/1:27,12:39:97:97,0,229 +chr15 22298517 . T C 157.73 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.078;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.4146;MLEAC=5;MLEAF=0.625;MQ=13.57;MQ0=0;MQRankSum=2.493;QD=1.23;ReadPosRankSum=1.630;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:38,1:39:12:12,0,137 1/1:23,5:28:9:79,9,0 0/1:34,5:40:53:92,0,53 0/1:20,1:21:19:19,0,69 +chr15 22333122 rs117042563 T G 57.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.740;DB;DP=158;Dels=0.00;FS=4.824;HaplotypeScore=2.3686;MLEAC=1;MLEAF=0.125;MQ=17.30;MQ0=0;MQRankSum=0.981;QD=1.68;ReadPosRankSum=1.024;SB=-2.352e+01 GT:AD:DP:GQ:PL 0/0:32,0:32:9:0,9,109 0/1:23,11:34:93:93,0,162 0/0:48,0:48:27:0,27,322 0/0:44,0:44:33:0,33,367 +chr15 25200113 . C G 34.46 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.568;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=4.8546;MLEAC=1;MLEAF=0.167;MQ=21.60;MQ0=0;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.365;SB=2.50 GT:AD:DP:GQ:PL ./. 0/1:3,2:5:32:58,0,32 0/1:4,1:6:13:13,0,39 0/0:3,1:4:3:0,3,31 +chr15 25287077 . A C 74.72 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.189;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=6.3705;MLEAC=4;MLEAF=0.500;MQ=19.32;MQ0=0;MQRankSum=1.868;QD=1.59;ReadPosRankSum=-1.257;SB=17.92 GT:AD:DP:GQ:PL 0/1:12,1:13:26:26,0,41 0/1:8,1:9:20:20,0,38 1/1:9,1:12:3:24,3,0 0/1:10,2:12:23:47,0,23 +chr15 25353509 . G T 34.85 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.944;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.6537;MLEAC=2;MLEAF=0.333;MQ=32.90;MQ0=0;MQRankSum=1.268;QD=2.32;ReadPosRankSum=-0.761;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:12:0,12,119 0/1:5,2:7:58:58,0,59 0/1:7,1:8:15:15,0,79 ./. +chr15 25415809 rs2739838 C T 355.42 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.452;DB;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.2474;MLEAC=8;MLEAF=1.00;MQ=12.56;MQ0=0;MQRankSum=1.137;QD=3.66;ReadPosRankSum=2.931;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,24:27:9:70,9,0 1/1:2,26:28:12:113,12,0 1/1:0,23:23:9:85,9,0 1/1:4,15:19:15:126,15,0 +chr15 28230282 . A C 45 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.897;DP=71;Dels=0.00;FS=5.290;HaplotypeScore=0.2447;MLEAC=1;MLEAF=0.125;MQ=34.96;MQ0=0;MQRankSum=-1.160;QD=2.37;ReadPosRankSum=-0.942;SB=0.137 GT:AD:DP:GQ:PL 0/0:20,0:20:36:0,36,489 0/0:21,0:21:45:0,45,584 0/0:11,0:11:21:0,21,273 0/1:15,4:19:81:81,0,411 +chr15 28231793 rs10852218 T C 4469.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.517;DB;DP=152;Dels=0.00;FS=13.675;HaplotypeScore=3.9002;MLEAC=8;MLEAF=1.00;MQ=33.45;MQ0=0;MQRankSum=2.266;QD=29.40;ReadPosRankSum=4.733;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:5,34:39:45:1194,45,0 1/1:6,45:51:52:1531,52,0 1/1:7,40:47:24:1373,24,0 1/1:3,12:15:33:371,33,0 +chr15 28437220 . C G 190.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.226;DP=215;Dels=0.01;FS=61.042;HaplotypeScore=11.7342;MLEAC=3;MLEAF=0.375;MQ=33.01;MQ0=0;MQRankSum=-3.052;QD=1.24;ReadPosRankSum=0.381;SB=-7.232e+00 GT:AD:DP:GQ:PL 0/1:46,8:54:99:133,0,868 0/1:43,6:49:71:71,0,684 0/0:57,4:61:29:0,29,1108 0/1:44,4:48:30:30,0,774 +chr15 28560818 . T A 266.67 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.846;DP=36;Dels=0.00;FS=9.243;HaplotypeScore=5.3416;MLEAC=5;MLEAF=0.625;MQ=19.15;MQ0=0;MQRankSum=2.038;QD=7.41;ReadPosRankSum=2.565;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,5:5:12:105,12,0 0/1:8,4:12:16:48,0,16 0/1:7,4:11:17:76,0,17 0/1:3,5:8:9:82,0,9 +chr15 28566630 rs7402161 C T 38.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=-1.197;DB;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.55;MQ0=0;MQRankSum=-0.041;QD=2.04;ReadPosRankSum=1.032;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:11,8:19:6:70,6,0 ./. ./. ./. +chr15 28702799 . G T 68.20 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.657;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4483;MLEAC=3;MLEAF=0.750;MQ=11.75;MQ0=0;MQRankSum=3.431;QD=1.70;ReadPosRankSum=0.350;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:17,4:21:6:56,6,0 0/1:17,2:19:14:48,0,14 ./. ./. +chr15 29008631 . G A 59.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.867;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.4484;MLEAC=6;MLEAF=1.00;MQ=11.48;MQ0=0;MQRankSum=2.693;QD=2.47;ReadPosRankSum=-2.510;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,1:6:3:37,3,0 1/1:8,1:9:3:31,3,0 1/1:8,1:9:3:26,3,0 ./. +chr15 29393849 . C T 60.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.339;DP=78;Dels=0.00;FS=30.232;HaplotypeScore=1.6313;MLEAC=3;MLEAF=0.375;MQ=32.70;MQ0=0;MQRankSum=-0.683;QD=1.08;ReadPosRankSum=1.460;SB=-3.420e+00 GT:AD:DP:GQ:PL 0/1:17,2:19:1:1,0,406 0/1:16,5:21:70:70,0,398 0/0:22,0:22:48:0,48,602 0/1:14,2:16:29:29,0,316 +chr15 29420987 . C G 52.58 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.894;DP=55;Dels=0.02;FS=4.861;HaplotypeScore=11.5852;MLEAC=3;MLEAF=0.375;MQ=24.73;MQ0=0;MQRankSum=-1.588;QD=1.19;ReadPosRankSum=3.155;SB=-3.550e+01 GT:AD:DP:GQ:PL 0/0:10,1:11:15:0,15,144 0/1:12,5:17:79:79,0,115 0/1:12,1:15:11:11,0,150 0/1:10,1:11:2:2,0,208 +chr15 29443861 . T C 194.45 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.200;DP=39;Dels=0.00;FS=6.628;HaplotypeScore=11.9858;MLEAC=6;MLEAF=0.750;MQ=21.69;MQ0=0;MQRankSum=1.508;QD=4.99;ReadPosRankSum=-0.954;SB=15.93 GT:AD:DP:GQ:PL 1/1:3,4:7:9:83,9,0 1/1:9,2:12:6:52,6,0 0/1:6,2:9:45:45,0,49 1/1:7,4:11:6:57,6,0 +chr15 30053988 . A C 191.59 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.194;DP=30;Dels=0.00;FS=15.000;HaplotypeScore=5.3723;MLEAC=7;MLEAF=0.875;MQ=19.60;MQ0=0;MQRankSum=2.937;QD=6.39;ReadPosRankSum=-1.323;SB=0.982 GT:AD:DP:GQ:PL 1/1:5,5:10:9:95,9,0 0/1:2,5:8:13:49,0,13 1/1:3,4:7:6:53,6,0 1/1:4,1:5:3:36,3,0 +chr15 30112788 . A C 55.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.620;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.9809;MLEAC=2;MLEAF=0.250;MQ=40.55;MQ0=0;MQRankSum=-2.682;QD=1.24;ReadPosRankSum=-2.118;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:31,1:32:58:0,58,995 0/1:30,5:36:78:78,0,871 0/0:33,1:34:74:0,74,1214 0/1:8,1:9:19:19,0,159 +chr15 31086892 . T A 51.43 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.338;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=2.9021;MLEAC=4;MLEAF=0.500;MQ=17.55;MQ0=0;MQRankSum=3.582;QD=0.28;ReadPosRankSum=-2.338;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:40,3:43:39:39,0,83 0/1:38,4:42:11:11,0,113 0/1:50,3:53:35:35,0,252 0/1:42,2:44:8:8,0,178 +chr15 31087793 . A T 43.66 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.961;DP=137;Dels=0.03;FS=0.000;HaplotypeScore=9.8666;MLEAC=3;MLEAF=0.375;MQ=11.51;MQ0=0;MQRankSum=1.612;QD=0.43;ReadPosRankSum=2.884;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:34,5:39:51:51,0,86 0/1:27,2:29:20:20,0,26 0/0:33,3:36:9:0,9,111 0/1:25,3:29:15:15,0,78 +chr15 31088273 rs112871153 G GC 1441.55 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.552;DB;DP=196;FS=3.372;HaplotypeScore=15.8167;MLEAC=7;MLEAF=0.875;MQ=16.71;MQ0=0;MQRankSum=-2.902;QD=7.35;RPA=3,4;RU=C;ReadPosRankSum=0.912;SB=-6.266e+02;STR GT:AD:DP:GQ:PL 1/1:10,30:6:18:212,18,0 0/1:24,20:20:99:274,0,297 1/1:11,44:13:36:426,36,0 1/1:12,37:17:48:583,48,0 +chr15 31318567 rs13380246 C T 57.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.848;DB;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.6960;MLEAC=2;MLEAF=0.250;MQ=30.57;MQ0=0;MQRankSum=0.146;QD=3.04;ReadPosRankSum=-0.535;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,3:9:52:52,0,120 0/0:11,0:11:30:0,30,338 0/1:8,2:10:47:47,0,253 0/0:5,0:5:12:0,12,134 +chr15 31358445 . T G 43.52 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.653;DP=131;Dels=0.00;FS=2.256;HaplotypeScore=1.1326;MLEAC=1;MLEAF=0.125;MQ=38.68;MQ0=0;MQRankSum=-0.407;QD=1.61;ReadPosRankSum=1.179;SB=1.25 GT:AD:DP:GQ:PL 0/0:31,2:33:8:0,8,680 0/0:37,2:39:18:0,18,1079 0/0:30,2:32:6:0,6,695 0/1:23,4:27:79:79,0,643 +chr15 33191023 rs173224 A G 447.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.676;DB;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=0.5825;MLEAC=1;MLEAF=0.125;MQ=43.08;MQ0=0;MQRankSum=0.447;QD=10.93;ReadPosRankSum=-0.935;SB=-1.178e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:78:0,78,1095 0/1:27,14:41:99:484,0,956 0/0:46,0:46:99:0,135,1883 0/0:16,0:16:45:0,45,618 +chr15 33359257 . A C 99.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.932;DP=288;Dels=0.00;FS=54.769;HaplotypeScore=4.2727;MLEAC=1;MLEAF=0.125;MQ=35.52;MQ0=0;MQRankSum=-1.190;QD=1.30;ReadPosRankSum=1.336;SB=-5.435e+00 GT:AD:DP:GQ:PL 0/1:68,9:77:99:136,0,1502 0/0:61,5:66:34:0,34,1539 0/0:81,2:84:99:0,131,2108 0/0:59,1:60:99:0,112,1685 +chr15 33359843 . C A 63.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.708;DP=339;Dels=0.01;FS=97.490;HaplotypeScore=3.9096;MLEAC=3;MLEAF=0.375;MQ=34.66;MQ0=0;MQRankSum=-4.666;QD=0.26;ReadPosRankSum=1.377;SB=-1.028e+00 GT:AD:DP:GQ:PL 0/1:85,9:94:7:7,0,2514 0/1:81,8:89:30:30,0,2313 0/0:88,3:91:99:0,142,2888 0/1:53,9:62:69:69,0,1522 +chr15 33443458 . C G 632.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.106;DP=133;Dels=0.00;FS=4.525;HaplotypeScore=0.6778;MLEAC=3;MLEAF=0.375;MQ=34.66;MQ0=0;MQRankSum=-3.489;QD=7.19;ReadPosRankSum=1.737;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:19,12:31:99:320,0,514 0/0:44,0:45:99:0,120,1553 0/1:31,10:41:99:203,0,957 0/1:9,7:16:99:153,0,220 +chr15 33445782 . G C 218.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.981;DP=106;Dels=0.02;FS=149.047;HaplotypeScore=6.6337;MLEAC=3;MLEAF=0.375;MQ=28.97;MQ0=0;MQRankSum=-3.942;QD=2.70;ReadPosRankSum=2.899;SB=-9.389e-01 GT:AD:DP:GQ:PL 0/1:25,4:29:24:24,0,695 0/1:20,7:28:99:125,0,423 0/1:16,6:22:99:113,0,426 0/0:24,1:25:37:0,37,663 +chr15 33876517 rs2643364 A G 2171.24 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.393;DB;DP=66;Dels=0.00;FS=10.142;HaplotypeScore=2.0352;MLEAC=8;MLEAF=1.00;MQ=36.69;MQ0=0;MQRankSum=3.393;QD=32.90;ReadPosRankSum=1.250;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,16:19:11:609,11,0 1/1:1,16:17:48:670,48,0 1/1:4,21:25:60:806,60,0 1/1:2,3:5:9:125,9,0 +chr15 33955671 . A G 60.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.637;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.6867;MLEAC=4;MLEAF=0.500;MQ=29.44;MQ0=0;MQRankSum=1.025;QD=0.96;ReadPosRankSum=-0.914;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,1:17:0:0,0,299 0/1:15,3:18:52:52,0,239 0/1:23,2:25:21:21,0,421 0/1:18,2:20:27:27,0,244 +chr15 34023995 . C A 140.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.234;DP=104;Dels=0.00;FS=4.829;HaplotypeScore=5.7719;MLEAC=4;MLEAF=0.500;MQ=32.37;MQ0=0;MQRankSum=-3.136;QD=1.35;ReadPosRankSum=-0.144;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,5:26:98:98,0,545 0/1:29,4:33:8:8,0,623 0/1:31,6:37:69:69,0,767 0/1:7,1:8:7:7,0,104 +chr15 34030761 . C T 179.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.213;DP=154;Dels=0.04;FS=96.595;HaplotypeScore=4.1539;MLEAC=4;MLEAF=0.500;MQ=35.59;MQ0=0;MQRankSum=-3.846;QD=1.17;ReadPosRankSum=0.797;SB=-1.363e-01 GT:AD:DP:GQ:PL 0/1:34,5:39:25:25,0,919 0/1:36,8:44:99:125,0,950 0/1:40,6:46:57:57,0,1107 0/1:17,2:19:15:15,0,476 +chr15 34030865 rs4780171 T C 241.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.040;DB;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=1.1277;MLEAC=1;MLEAF=0.125;MQ=33.85;MQ0=0;MQRankSum=2.397;QD=9.68;ReadPosRankSum=0.903;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,105,1358 0/1:16,8:24:99:278,0,259 0/0:40,0:40:99:0,102,1252 0/0:26,0:26:66:0,66,845 +chr15 34064400 . G T 163.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.955;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=3.6767;MLEAC=4;MLEAF=0.500;MQ=35.92;MQ0=0;MQRankSum=-0.522;QD=0.99;ReadPosRankSum=-0.823;SB=-9.613e-02 GT:AD:DP:GQ:PL 0/1:36,2:38:15:15,0,551 0/1:34,4:38:67:67,0,563 0/1:39,3:42:70:70,0,475 0/1:43,3:46:54:54,0,576 +chr15 34657695 . A G 189.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.577;DP=90;Dels=0.00;FS=7.928;HaplotypeScore=5.8530;MLEAC=4;MLEAF=0.500;MQ=19.51;MQ0=0;MQRankSum=3.108;QD=2.92;ReadPosRankSum=-0.640;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:19:58,0,19 1/1:16,2:18:6:62,6,0 0/0:25,0:25:6:0,6,46 0/1:22,5:27:99:114,0,99 +chr15 34666060 rs4984215 C T 514.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.394;DB;DP=158;Dels=0.00;FS=7.929;HaplotypeScore=1.4097;MLEAC=3;MLEAF=0.375;MQ=23.65;MQ0=0;MQRankSum=-2.153;QD=4.36;ReadPosRankSum=0.815;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:12,20:32:99:349,0,136 0/0:40,0:40:54:0,54,638 0/1:28,18:46:99:103,0,461 0/1:22,18:40:99:106,0,495 +chr15 35196655 . A G 109.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.894;DP=96;Dels=0.00;FS=39.434;HaplotypeScore=7.5929;MLEAC=1;MLEAF=0.125;MQ=30.79;MQ0=0;MQRankSum=-1.883;QD=2.95;ReadPosRankSum=0.579;SB=0.341 GT:AD:DP:GQ:PL 0/0:21,0:21:24:0,24,280 0/1:29,8:37:99:145,0,651 0/0:32,1:33:55:0,55,884 0/0:5,0:5:9:0,9,86 +chr15 35834561 . G T 73.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.995;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=3.4073;MLEAC=4;MLEAF=0.500;MQ=24.13;MQ0=0;MQRankSum=-1.650;QD=1.99;ReadPosRankSum=1.074;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,4:7:31:31,0,32 0/1:8,4:12:19:19,0,47 0/1:9,3:12:26:26,0,216 0/1:3,2:5:23:40,0,23 +chr15 36937606 rs11073192 A C 46.77 . AC=2;AF=1.00;AN=2;DB;DP=8;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.11;MQ0=0;QD=23.38;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6:78,6,0 ./. ./. +chr15 36946441 rs10220785 C T 178.85 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.666;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=25.64;MQ0=0;MQRankSum=1.666;QD=17.89;ReadPosRankSum=-1.179;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:9:99,9,0 1/1:1,1:3:3:39,3,0 1/1:0,3:3:6:77,6,0 ./. +chr15 37100766 . T A 73.36 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.463;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.0699;MLEAC=3;MLEAF=0.375;MQ=36.26;MQ0=0;MQRankSum=-4.124;QD=1.83;ReadPosRankSum=-0.157;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,1:18:3:0,3,460 0/1:19,3:22:41:41,0,386 0/1:14,4:18:70:70,0,416 0/0:21,2:24:0:0,0,572 +chr15 37109220 rs17417401 A G 127.03 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.922;DB;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.4945;MLEAC=2;MLEAF=0.250;MQ=27.63;MQ0=0;MQRankSum=1.511;QD=18.15;ReadPosRankSum=-1.216;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:12:0,12,148 1/1:1,6:7:12:170,12,0 0/0:4,0:4:6:0,6,67 0/0:1,0:1:3:0,3,36 +chr15 37109677 . G C 103.34 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.350;DP=97;Dels=0.01;FS=7.954;HaplotypeScore=7.7828;MLEAC=3;MLEAF=0.375;MQ=22.33;MQ0=0;MQRankSum=2.450;QD=1.34;ReadPosRankSum=1.117;SB=-2.780e+00 GT:AD:DP:GQ:PL 0/1:24,2:26:12:12,0,78 0/1:23,2:25:34:37,0,34 0/1:19,5:25:92:97,0,92 0/0:20,0:20:15:0,15,119 +chr15 38757459 . C A 71.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.359;DP=48;Dels=0.00;FS=11.524;HaplotypeScore=2.6020;MLEAC=2;MLEAF=0.250;MQ=22.33;MQ0=0;MQRankSum=-1.359;QD=2.16;ReadPosRankSum=-0.822;SB=0.587 GT:AD:DP:GQ:PL 0/1:7,6:13:59:59,0,108 0/1:16,4:20:53:53,0,157 0/0:10,1:11:12:0,12,133 0/0:3,1:4:6:0,6,53 +chr15 38803858 . A T 974.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.831;DP=252;Dels=0.00;FS=197.702;HaplotypeScore=8.7821;MLEAC=4;MLEAF=0.500;MQ=34.47;MQ0=0;MQRankSum=-6.201;QD=3.87;ReadPosRankSum=-0.370;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:54,19:73:99:354,0,1659 0/1:50,13:63:99:254,0,1201 0/1:51,12:63:99:213,0,1492 0/1:40,13:53:99:196,0,1060 +chr15 39545032 rs156783 T G 40.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=4;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.96;MQ0=0;MQRankSum=0.736;QD=13.59;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,2:3:6:72,6,0 ./. ./. +chr15 40018931 . C A 98.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.465;DP=94;Dels=0.00;FS=21.219;HaplotypeScore=12.5574;MLEAC=2;MLEAF=0.250;MQ=32.07;MQ0=0;MQRankSum=-2.229;QD=1.76;ReadPosRankSum=-1.090;SB=0.834 GT:AD:DP:GQ:PL 0/1:20,3:23:55:55,0,415 0/0:18,1:20:21:0,21,253 0/1:26,5:33:85:85,0,552 0/0:18,0:18:30:0,30,375 +chr15 40099169 . T G 34.04 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.733;DP=138;Dels=0.01;FS=0.000;HaplotypeScore=9.1638;MLEAC=3;MLEAF=0.375;MQ=23.45;MQ0=0;MQRankSum=1.638;QD=0.49;ReadPosRankSum=-3.181;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:28,4:32:55:55,0,289 0/1:34,3:37:17:17,0,460 0/0:32,2:35:0:0,0,411 0/0:31,2:33:5:0,5,293 +chr15 40491942 . T A 221.06 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.658;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.2343;MLEAC=3;MLEAF=0.375;MQ=27.82;MQ0=0;MQRankSum=-2.592;QD=2.51;ReadPosRankSum=2.111;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,9:34:99:175,0,296 0/0:38,1:40:25:0,25,483 0/1:32,8:41:75:75,0,473 0/1:11,2:13:14:14,0,101 +chr15 40494498 rs2305653 G A 231.27 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.895;DB;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9799;MLEAC=2;MLEAF=0.250;MQ=28.36;MQ0=0;MQRankSum=-0.895;QD=11.56;ReadPosRankSum=0.849;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,6:10:88:174,0,88 0/0:9,0:9:18:0,18,235 0/1:6,4:10:98:98,0,135 0/0:3,0:3:6:0,6,55 +chr15 40500848 . G A 76.96 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.615;DP=64;Dels=0.02;FS=17.479;HaplotypeScore=6.3187;MLEAC=4;MLEAF=0.500;MQ=26.33;MQ0=0;MQRankSum=-3.572;QD=1.20;ReadPosRankSum=1.911;SB=-2.953e-01 GT:AD:DP:GQ:PL 0/1:13,4:18:40:40,0,146 0/1:19,3:22:21:21,0,219 0/1:7,3:10:48:48,0,65 0/1:12,1:13:10:10,0,96 +chr15 40500859 . T G 46.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.817;DP=76;Dels=0.01;FS=10.021;HaplotypeScore=3.9041;MLEAC=2;MLEAF=0.250;MQ=31.68;MQ0=0;MQRankSum=-3.035;QD=1.31;ReadPosRankSum=-1.562;SB=0.283 GT:AD:DP:GQ:PL 0/0:18,2:20:3:0,3,332 0/0:19,1:20:16:0,16,453 0/1:20,2:22:20:20,0,430 0/1:9,4:13:66:66,0,250 +chr15 40544653 . A C 71.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.813;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=2.2983;MLEAC=3;MLEAF=0.375;MQ=24.49;MQ0=0;MQRankSum=-0.705;QD=2.66;ReadPosRankSum=0.597;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:24:24,0,24 0/1:10,3:14:59:71,0,59 0/0:4,0:4:3:0,3,36 0/1:3,2:6:18:18,0,53 +chr15 40662472 . G A 77.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.933;DP=122;Dels=0.00;FS=32.045;HaplotypeScore=5.6436;MLEAC=4;MLEAF=0.500;MQ=28.24;MQ0=0;MQRankSum=-1.002;QD=0.64;ReadPosRankSum=-1.645;SB=-5.889e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:43:43,0,283 0/1:30,4:34:27:27,0,603 0/1:31,3:34:20:20,0,522 0/1:29,3:32:30:30,0,385 +chr15 40916499 . C T 43.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.713;DP=102;Dels=0.00;FS=7.270;HaplotypeScore=2.2054;MLEAC=2;MLEAF=0.250;MQ=35.79;MQ0=0;MQRankSum=0.025;QD=1.12;ReadPosRankSum=-0.696;SB=0.856 GT:AD:DP:GQ:PL 0/0:30,1:31:36:0,36,735 0/1:25,3:28:31:31,0,581 0/0:31,1:32:29:0,29,576 0/1:9,2:11:54:54,0,121 +chr15 41037186 . T A 107.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.575;DP=39;Dels=0.00;FS=5.263;HaplotypeScore=3.4207;MLEAC=2;MLEAF=0.250;MQ=28.75;MQ0=0;MQRankSum=-1.275;QD=5.99;ReadPosRankSum=0.975;SB=0.029 GT:AD:DP:GQ:PL 0/1:4,3:7:62:76,0,62 0/0:16,0:16:27:0,27,307 0/1:8,3:11:73:73,0,96 0/0:5,0:5:12:0,12,135 +chr15 41067598 . G A 66.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.381;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9908;MLEAC=3;MLEAF=0.375;MQ=33.28;MQ0=0;MQRankSum=-1.421;QD=2.03;ReadPosRankSum=2.382;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:45:45,0,254 0/0:8,0:8:18:0,18,205 0/1:10,2:12:23:23,0,272 0/1:5,2:7:42:42,0,155 +chr15 41072085 . G T 301.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.143;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5536;MLEAC=4;MLEAF=0.500;MQ=32.46;MQ0=0;MQRankSum=0.288;QD=4.02;ReadPosRankSum=3.428;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,6:18:99:131,0,194 0/1:16,3:19:40:40,0,344 0/1:17,3:20:55:55,0,200 0/1:13,5:18:99:118,0,156 +chr15 41100005 . G T 88.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.450;DP=47;Dels=0.00;FS=2.411;HaplotypeScore=1.3750;MLEAC=3;MLEAF=0.375;MQ=34.21;MQ0=0;MQRankSum=-2.481;QD=2.76;ReadPosRankSum=-0.453;SB=-1.081e-01 GT:AD:DP:GQ:PL 0/1:10,3:13:58:58,0,262 0/1:9,3:12:58:58,0,208 0/0:14,1:15:12:0,12,487 0/1:6,1:7:15:15,0,123 +chr15 41192454 . T A 108.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.149;DP=111;Dels=0.00;FS=48.525;HaplotypeScore=17.4586;MLEAC=2;MLEAF=0.250;MQ=27.91;MQ0=0;MQRankSum=-0.744;QD=1.94;ReadPosRankSum=1.013;SB=7.94 GT:AD:DP:GQ:PL 0/1:20,4:24:58:58,0,279 0/0:22,0:24:33:0,33,403 0/0:30,1:31:28:0,28,631 0/1:25,5:32:92:92,0,285 +chr15 41230239 . A C 63.97 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.718;DP=42;Dels=0.02;FS=9.066;HaplotypeScore=3.8906;MLEAC=2;MLEAF=0.250;MQ=34.15;MQ0=0;MQRankSum=-0.718;QD=3.37;ReadPosRankSum=-1.841;SB=0.247 GT:AD:DP:GQ:PL 0/1:6,1:7:10:10,0,141 0/0:9,0:9:18:0,18,212 0/0:13,0:13:15:0,15,158 0/1:8,4:12:94:94,0,104 +chr15 41276158 rs11855248 G A 1804.09 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.403;DB;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=7;MLEAF=0.875;MQ=36.12;MQ0=0;MQRankSum=-0.014;QD=24.05;ReadPosRankSum=0.773;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,18:22:15:620,15,0 0/1:11,9:20:99:254,0,342 1/1:1,15:16:22:522,22,0 1/1:4,13:17:8:452,8,0 +chr15 41379846 . A T 49.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.272;DP=158;Dels=0.01;FS=28.519;HaplotypeScore=39.2762;MLEAC=2;MLEAF=0.250;MQ=31.23;MQ0=0;MQRankSum=-2.075;QD=0.73;ReadPosRankSum=2.599;SB=-5.168e+00 GT:AD:DP:GQ:PL 0/0:45,0:46:48:0,48,566 0/1:44,5:50:38:38,0,832 0/0:42,0:42:57:0,57,718 0/1:13,4:18:53:53,0,232 +chr15 41456115 . C T 112.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.958;DP=337;Dels=0.02;FS=105.237;HaplotypeScore=10.8330;MLEAC=2;MLEAF=0.250;MQ=22.60;MQ0=0;MQRankSum=-1.217;QD=0.73;ReadPosRankSum=1.839;SB=0.238 GT:AD:DP:GQ:PL 0/0:71,7:78:66:0,66,1097 0/0:95,6:101:53:0,53,1164 0/1:81,9:90:92:92,0,854 0/1:51,11:62:62:62,0,747 +chr15 41795387 . G A 50.27 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.800;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.4270;MLEAC=6;MLEAF=0.750;MQ=17.28;MQ0=0;MQRankSum=1.867;QD=3.35;ReadPosRankSum=-2.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,27 1/1:3,1:4:3:36,3,0 1/1:4,2:6:3:28,3,0 1/1:3,2:5:3:27,3,0 +chr15 41819283 rs2297379 G A 898.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.584;DB;DP=130;Dels=0.00;FS=12.601;HaplotypeScore=6.2370;MLEAC=3;MLEAF=0.375;MQ=30.20;MQ0=0;MQRankSum=-1.524;QD=9.27;ReadPosRankSum=-1.637;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/0:33,0:33:81:0,81,977 0/1:24,12:36:99:293,0,485 0/1:18,8:26:99:224,0,354 0/1:18,17:35:99:425,0,360 +chr15 42028530 . C A 35.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.125;DP=327;Dels=0.00;FS=75.689;HaplotypeScore=7.3368;MLEAC=1;MLEAF=0.125;MQ=36.55;MQ0=0;MQRankSum=-3.258;QD=0.64;ReadPosRankSum=0.643;SB=-5.168e+00 GT:AD:DP:GQ:PL 0/0:84,5:89:99:0,113,2651 0/0:86,2:88:99:0,156,2679 0/0:90,3:93:99:0,127,2873 0/1:49,7:56:72:72,0,1429 +chr15 42052468 . A G 70.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.896;DP=168;Dels=0.01;FS=0.000;HaplotypeScore=4.6617;MLEAC=2;MLEAF=0.250;MQ=34.49;MQ0=0;MQRankSum=-3.902;QD=0.73;ReadPosRankSum=-0.338;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:42,1:43:73:0,73,1218 0/1:41,7:48:88:88,0,1092 0/1:43,5:48:24:24,0,948 0/0:25,2:27:22:0,22,684 +chr15 42103386 . A C 53.52 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.610;DP=116;Dels=0.00;FS=35.102;HaplotypeScore=2.7200;MLEAC=2;MLEAF=0.250;MQ=30.65;MQ0=0;MQRankSum=-1.820;QD=1.73;ReadPosRankSum=0.553;SB=-8.835e+00 GT:AD:DP:GQ:PL 0/0:21,1:22:15:0,15,522 0/1:25,5:31:87:87,0,462 0/0:35,3:38:0:0,0,903 0/0:22,3:25:0:0,0,566 +chr15 42137581 rs1648827 A C 1081.36 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.239;DB;DP=50;Dels=0.00;FS=13.947;HaplotypeScore=2.6225;MLEAC=8;MLEAF=1.00;MQ=29.16;MQ0=0;MQRankSum=3.411;QD=21.63;ReadPosRankSum=1.425;SB=-3.600e+01 GT:AD:DP:GQ:PL 0/1:4,7:11:4:236,0,4 1/1:2,11:13:30:348,30,0 1/1:6,7:13:21:255,21,0 1/1:4,8:12:24:283,24,0 +chr15 42139038 rs890508 G A 790.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=5.990;DB;DP=62;Dels=0.03;FS=3.340;HaplotypeScore=7.3276;MLEAC=5;MLEAF=0.625;MQ=26.20;MQ0=0;MQRankSum=5.790;QD=12.75;ReadPosRankSum=-0.550;SB=-9.607e+01 GT:AD:DP:GQ:PL 1/1:5,8:13:4:306,4,0 0/1:14,5:19:6:161,0,6 0/1:6,7:13:9:240,0,9 0/1:10,5:15:10:125,0,10 +chr15 42139642 rs883329 C T 171.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.804;DB;DP=94;Dels=0.00;FS=2.256;HaplotypeScore=3.3277;MLEAC=1;MLEAF=0.125;MQ=29.71;MQ0=0;MQRankSum=-0.496;QD=8.19;ReadPosRankSum=-0.124;SB=-1.154e-02 GT:AD:DP:GQ:PL 0/0:26,0:26:60:0,60,698 0/1:12,9:21:99:208,0,189 0/0:27,0:27:66:0,66,770 0/0:20,0:20:45:0,45,540 +chr15 42149172 . A C 31.30 . AC=1;AF=0.167;AN=6;BaseQRankSum=1.080;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.167;MQ=25.76;MQ0=0;MQRankSum=0.577;QD=2.41;ReadPosRankSum=-0.226;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,1:20:9:0,9,85 0/0:12,1:13:3:0,3,23 ./. 0/1:10,3:13:65:65,0,106 +chr15 42175210 . C T 151.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.761;DP=66;Dels=0.05;FS=12.477;HaplotypeScore=10.5949;MLEAC=3;MLEAF=0.375;MQ=24.27;MQ0=0;MQRankSum=-2.578;QD=2.76;ReadPosRankSum=0.303;SB=0.437 GT:AD:DP:GQ:PL 0/1:7,6:13:58:58,0,139 0/1:13,5:18:85:85,0,123 0/1:17,4:21:52:52,0,283 0/0:8,3:11:15:0,15,155 +chr15 42178464 . T G 78.20 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.103;DP=86;Dels=0.01;FS=69.188;HaplotypeScore=3.8990;MLEAC=4;MLEAF=0.500;MQ=30.51;MQ0=0;MQRankSum=-2.473;QD=0.91;ReadPosRankSum=1.348;SB=-1.875e+00 GT:AD:DP:GQ:PL 0/1:15,3:18:30:30,0,380 0/1:20,3:23:8:8,0,516 0/1:17,4:21:65:65,0,426 0/1:20,3:23:17:17,0,336 +chr15 42302396 . C T 69.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.958;DP=145;Dels=0.01;FS=2.625;HaplotypeScore=26.3511;MLEAC=3;MLEAF=0.375;MQ=28.33;MQ0=0;MQRankSum=-2.115;QD=0.63;ReadPosRankSum=2.274;SB=-1.200e+01 GT:AD:DP:GQ:PL 0/1:32,4:36:24:24,0,438 0/0:35,0:35:42:0,42,486 0/1:34,5:40:48:48,0,523 0/1:29,4:33:41:41,0,334 +chr15 42434254 rs655427 G A 1249.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.246;DB;DP=127;Dels=0.02;FS=1.728;HaplotypeScore=12.6788;MLEAC=4;MLEAF=0.500;MQ=34.27;MQ0=0;MQRankSum=-0.941;QD=9.84;ReadPosRankSum=-0.737;SB=-2.160e+02 GT:AD:DP:GQ:PL 0/1:16,9:25:99:222,0,454 0/1:21,8:29:99:198,0,395 0/1:22,11:33:99:286,0,619 0/1:19,18:37:99:586,0,413 +chr15 42438406 . C A 336.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.662;DP=134;Dels=0.00;FS=32.689;HaplotypeScore=9.4448;MLEAC=4;MLEAF=0.500;MQ=28.06;MQ0=0;MQRankSum=-1.864;QD=3.54;ReadPosRankSum=1.319;SB=-1.490e+00 GT:AD:DP:GQ:PL 0/1:24,4:28:50:50,0,303 0/1:18,8:26:99:175,0,146 0/0:35,3:39:2:0,2,606 0/1:34,7:41:99:152,0,447 +chr15 42480007 . T G 81.05 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.275;DP=176;Dels=0.00;FS=23.150;HaplotypeScore=26.9360;MLEAC=4;MLEAF=0.500;MQ=22.23;MQ0=0;MQRankSum=-1.068;QD=0.46;ReadPosRankSum=4.024;SB=-4.155e-01 GT:AD:DP:GQ:PL 0/1:43,4:47:21:21,0,296 0/1:38,7:45:43:43,0,327 0/1:40,4:44:9:9,0,326 0/1:36,4:40:50:50,0,189 +chr15 42717176 . G A 38 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.932;DP=118;Dels=0.00;FS=11.035;HaplotypeScore=4.7450;MLEAC=1;MLEAF=0.125;MQ=34.39;MQ0=0;MQRankSum=-2.539;QD=1.41;ReadPosRankSum=-0.974;SB=0.392 GT:AD:DP:GQ:PL 0/0:25,1:26:23:0,23,573 0/0:28,1:29:27:0,27,612 0/0:36,0:36:75:0,75,952 0/1:23,4:27:74:74,0,362 +chr15 42981648 . A C 189.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.037;DP=159;Dels=0.00;FS=101.668;HaplotypeScore=3.7728;MLEAC=4;MLEAF=0.500;MQ=35.33;MQ0=0;MQRankSum=-3.527;QD=1.19;ReadPosRankSum=2.284;SB=-2.438e-01 GT:AD:DP:GQ:PL 0/1:33,3:36:26:26,0,804 0/1:39,6:45:82:82,0,938 0/1:35,7:42:99:112,0,1019 0/1:31,5:36:12:12,0,859 +chr15 43028433 . G T 556.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.768;DP=83;Dels=0.00;FS=20.751;HaplotypeScore=7.5584;MLEAC=4;MLEAF=0.500;MQ=26.49;MQ0=0;MQRankSum=0.329;QD=6.71;ReadPosRankSum=-0.017;SB=-4.248e+01 GT:AD:DP:GQ:PL 0/1:11,8:19:64:160,0,64 0/1:17,8:25:41:220,0,41 0/1:16,5:21:66:66,0,159 0/1:12,6:18:99:153,0,107 +chr15 43277042 . A T 152.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.297;DP=152;Dels=0.01;FS=69.243;HaplotypeScore=14.1565;MLEAC=3;MLEAF=0.375;MQ=23.72;MQ0=0;MQRankSum=1.371;QD=1.09;ReadPosRankSum=-0.713;SB=-1.348e+00 GT:AD:DP:GQ:PL 0/1:39,7:46:99:157,0,402 0/1:38,4:44:32:32,0,472 0/1:46,2:49:3:3,0,562 0/0:10,1:12:6:0,6,70 +chr15 43408716 . C T 107.31 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.798;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=0.4957;MLEAC=4;MLEAF=0.500;MQ=25.58;MQ0=0;MQRankSum=1.732;QD=3.58;ReadPosRankSum=-1.771;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:17:17,0,168 1/1:7,2:9:6:61,6,0 0/0:13,0:13:27:0,27,252 0/1:8,3:11:75:75,0,139 +chr15 43461738 . A T 189.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.707;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.6679;MLEAC=4;MLEAF=0.500;MQ=25.63;MQ0=0;MQRankSum=-3.221;QD=2.75;ReadPosRankSum=3.450;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,2:20:18:18,0,329 0/1:11,5:16:38:38,0,91 0/1:12,9:21:99:131,0,191 0/1:7,5:12:45:45,0,48 +chr15 43476388 . T G 144.13 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.064;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.5123;MLEAC=4;MLEAF=0.667;MQ=24.66;MQ0=0;MQRankSum=0.988;QD=5.34;ReadPosRankSum=0.684;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:14:14,0,151 0/1:7,6:13:50:113,0,50 1/1:2,2:4:6:57,6,0 ./. +chr15 43527236 rs579178 A G 552.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.917;DB;DP=33;Dels=0.00;FS=2.764;HaplotypeScore=0.4972;MLEAC=7;MLEAF=0.875;MQ=29.07;MQ0=0;MQRankSum=1.250;QD=16.73;ReadPosRankSum=-0.250;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:43:43,0,160 1/1:3,4:7:9:119,9,0 1/1:1,7:8:21:267,21,0 1/1:4,5:9:15:167,15,0 +chr15 43573895 . C A 71.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.699;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.4282;MLEAC=4;MLEAF=0.500;MQ=30.97;MQ0=0;MQRankSum=-3.597;QD=0.83;ReadPosRankSum=0.916;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:55:55,0,383 0/1:21,2:23:13:13,0,398 0/1:19,3:22:42:42,0,374 0/1:17,2:19:2:2,0,428 +chr15 43730669 . T C 205.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.174;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.4892;MLEAC=4;MLEAF=0.500;MQ=26.95;MQ0=0;MQRankSum=3.664;QD=1.96;ReadPosRankSum=1.413;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,3:25:58:58,0,178 0/1:29,4:33:75:97,0,75 0/1:32,2:34:39:39,0,130 0/1:10,3:13:54:54,0,74 +chr15 43748122 . TG T 161.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.951;DP=108;FS=7.356;HaplotypeScore=51.1348;MLEAC=4;MLEAF=0.500;MQ=27.45;MQ0=0;MQRankSum=-1.506;QD=1.49;RPA=3,2;RU=G;ReadPosRankSum=-0.419;SB=-6.377e-01;STR GT:AD:DP:GQ:PL 0/1:18,2:13:8:8,0,299 0/1:19,5:15:44:44,0,323 0/1:25,4:26:12:12,0,662 0/1:25,7:24:99:148,0,244 +chr15 43813734 . T C 115.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.878;DP=210;Dels=0.00;FS=61.964;HaplotypeScore=2.4944;MLEAC=3;MLEAF=0.375;MQ=35.72;MQ0=0;MQRankSum=-4.813;QD=0.80;ReadPosRankSum=2.305;SB=1.48 GT:AD:DP:GQ:PL 0/1:46,7:53:99:105,0,1207 0/1:45,4:49:13:13,0,1127 0/0:62,4:66:73:0,73,1628 0/1:37,5:42:40:40,0,873 +chr15 43927569 . T A 35.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.961;DP=133;Dels=0.00;FS=43.338;HaplotypeScore=2.1566;MLEAC=2;MLEAF=0.250;MQ=29.72;MQ0=0;MQRankSum=1.553;QD=0.65;ReadPosRankSum=0.587;SB=-6.963e+00 GT:AD:DP:GQ:PL 0/0:34,1:36:1:0,1,428 0/1:36,1:37:2:2,0,300 0/0:41,1:42:23:0,23,580 0/1:15,3:18:69:69,0,161 +chr15 43940144 . A T 33.06 . AC=3;AF=0.750;AN=4;BaseQRankSum=-2.285;DP=155;Dels=0.04;FS=79.474;HaplotypeScore=31.0379;MLEAC=3;MLEAF=0.750;MQ=7.80;MQ0=0;MQRankSum=0.176;QD=0.40;ReadPosRankSum=0.798;SB=2.15 GT:AD:DP:GQ:PL ./. ./. 1/1:29,5:39:6:51,6,0 0/1:36,4:40:18:18,0,45 +chr15 44053581 . A T 501.34 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.864;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0150;MLEAC=5;MLEAF=0.625;MQ=27.27;MQ0=0;MQRankSum=2.114;QD=4.96;ReadPosRankSum=0.619;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,5:31:99:152,0,106 0/1:22,8:30:99:221,0,182 0/1:22,6:28:99:104,0,219 1/1:8,4:12:6:68,6,0 +chr15 44105364 . T C 643.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.367;DP=274;Dels=0.00;FS=249.290;HaplotypeScore=4.1299;MLEAC=4;MLEAF=0.500;MQ=31.93;MQ0=0;MQRankSum=-2.061;QD=2.35;ReadPosRankSum=0.903;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/1:67,10:77:76:76,0,1627 0/1:55,13:68:99:256,0,1241 0/1:66,14:80:99:163,0,1464 0/1:39,10:49:99:191,0,1032 +chr15 44116587 . A T 52.53 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.851;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.2396;MLEAC=4;MLEAF=0.500;MQ=26.72;MQ0=0;MQRankSum=-0.605;QD=0.97;ReadPosRankSum=3.061;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:16:16,0,114 0/1:14,1:15:2:2,0,171 0/1:12,3:15:38:38,0,238 0/1:15,2:17:37:37,0,194 +chr15 44120590 . C T 94.27 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.215;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=8.3144;MLEAC=4;MLEAF=0.500;MQ=29.29;MQ0=0;MQRankSum=-3.067;QD=1.29;ReadPosRankSum=2.438;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:58:58,0,240 0/1:14,4:18:60:60,0,326 0/1:20,3:23:3:3,0,398 0/1:7,3:10:14:14,0,184 +chr15 44864830 . T C 41.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.546;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.2360;MLEAC=4;MLEAF=0.500;MQ=28.91;MQ0=0;MQRankSum=-2.975;QD=0.74;ReadPosRankSum=2.546;SB=-4.538e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:45:45,0,226 0/1:16,2:18:18:18,0,235 0/1:13,4:17:6:6,0,166 0/1:7,2:9:14:14,0,115 +chr15 44915050 . T G 895.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.529;DP=128;Dels=0.01;FS=2.976;HaplotypeScore=5.6017;MLEAC=4;MLEAF=0.500;MQ=28.04;MQ0=0;MQRankSum=3.123;QD=7.00;ReadPosRankSum=2.198;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,12:33:99:319,0,144 0/1:30,9:40:99:202,0,292 0/1:26,15:42:99:396,0,268 0/1:11,1:12:21:21,0,85 +chr15 45411285 . G T 30.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.653;DP=107;Dels=0.00;FS=2.214;HaplotypeScore=4.6696;MLEAC=3;MLEAF=0.375;MQ=30.33;MQ0=0;MQRankSum=-2.344;QD=0.39;ReadPosRankSum=1.825;SB=0.676 GT:AD:DP:GQ:PL 0/1:27,2:29:15:15,0,459 0/1:25,3:28:32:32,0,391 0/0:27,2:29:19:0,19,481 0/1:19,2:21:26:26,0,265 +chr15 45415009 . C A 117.44 . AC=5;AF=0.625;AN=8;BaseQRankSum=4.388;DP=72;Dels=0.03;FS=2.160;HaplotypeScore=18.1288;MLEAC=5;MLEAF=0.625;MQ=19.63;MQ0=0;MQRankSum=0.844;QD=2.02;ReadPosRankSum=1.142;SB=0.984 GT:AD:DP:GQ:PL 1/1:10,7:17:12:120,12,0 0/1:18,2:22:18:18,0,22 1/1:12,4:17:3:25,3,0 0/0:10,3:14:6:0,6,50 +chr15 45557456 rs11632419 C A 749.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.118;DB;DP=56;Dels=0.00;FS=2.972;HaplotypeScore=0.4952;MLEAC=4;MLEAF=0.500;MQ=35.02;MQ0=0;MQRankSum=-2.449;QD=20.26;ReadPosRankSum=0.640;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:54:0,54,732 1/1:1,16:17:48:587,48,0 0/1:8,5:13:99:151,0,215 0/1:5,2:7:60:60,0,79 +chr15 45706783 . T TC 221.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.140;DP=56;FS=14.075;HaplotypeScore=35.4948;MLEAC=4;MLEAF=0.500;MQ=24.12;MQ0=0;MQRankSum=-0.801;QD=3.96;RPA=1,2;RU=C;ReadPosRankSum=-0.024;SB=1.41;STR GT:AD:DP:GQ:PL 0/1:12,2:15:99:103,0,184 0/1:9,2:8:58:96,0,58 0/1:17,1:10:57:57,0,66 0/1:8,1:4:17:17,0,39 +chr15 45814139 . A C 143.76 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.514;DP=71;Dels=0.03;FS=2.932;HaplotypeScore=25.4454;MLEAC=5;MLEAF=0.625;MQ=20.60;MQ0=0;MQRankSum=0.498;QD=2.02;ReadPosRankSum=1.170;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:6,4:10:6:58,6,0 0/1:11,6:17:40:84,0,40 0/1:24,4:28:2:2,0,159 0/1:9,4:14:42:42,0,49 +chr15 45965743 . A C 164.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.946;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1467;MLEAC=3;MLEAF=0.375;MQ=38.28;MQ0=0;MQRankSum=-4.487;QD=1.50;ReadPosRankSum=3.300;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:37,1:38:55:0,55,1127 0/1:39,4:43:22:22,0,1060 0/1:35,6:41:90:90,0,995 0/1:20,6:26:96:96,0,585 +chr15 48444537 . G T 309.61 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.467;DP=104;Dels=0.00;FS=5.042;HaplotypeScore=4.1331;MLEAC=5;MLEAF=0.625;MQ=19.00;MQ0=0;MQRankSum=3.553;QD=2.98;ReadPosRankSum=-1.164;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,10:30:31:106,0,31 0/1:25,9:34:77:160,0,77 0/1:28,4:32:63:63,0,81 1/1:7,1:8:3:23,3,0 +chr15 48513186 . T G 401.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.341;DP=182;Dels=0.00;FS=34.704;HaplotypeScore=6.5230;MLEAC=4;MLEAF=0.500;MQ=33.88;MQ0=0;MQRankSum=-6.899;QD=2.21;ReadPosRankSum=2.128;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:37,9:46:99:108,0,1012 0/1:39,10:49:99:114,0,979 0/1:39,7:46:66:66,0,1083 0/1:29,12:41:99:156,0,649 +chr15 48580806 . A C 93.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.316;DP=83;Dels=0.02;FS=0.000;HaplotypeScore=18.1706;MLEAC=3;MLEAF=0.375;MQ=23.20;MQ0=0;MQRankSum=1.517;QD=1.83;ReadPosRankSum=0.622;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:59:59,0,175 0/0:29,3:32:9:0,9,293 0/1:19,3:22:58:58,0,195 0/1:5,1:6:19:19,0,28 +chr15 48591497 . T A,C 43.11 . AC=2,2;AF=0.250,0.250;AN=8;BaseQRankSum=0.221;DP=115;Dels=0.00;FS=17.480;HaplotypeScore=6.4967;MLEAC=2,2;MLEAF=0.250,0.250;MQ=29.59;MQ0=0;MQRankSum=-2.566;QD=0.37;ReadPosRankSum=1.084;SB=-1.087e+00 GT:AD:DP:GQ:PL 0/1:27,1,1:29:9:10,0,227,9,207,235 0/2:32,0,3:35:18:18,42,288,0,245,239 0/2:32,2,5:39:35:59,35,282,0,203,242 0/1:11,1,0:12:32:32,0,38,38,41,79 +chr15 48936809 . A T 729.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.113;DP=285;Dels=0.00;FS=70.071;HaplotypeScore=17.6048;MLEAC=4;MLEAF=0.500;MQ=29.04;MQ0=0;MQRankSum=1.512;QD=2.56;ReadPosRankSum=-0.234;SB=-6.863e-02 GT:AD:DP:GQ:PL 0/1:58,6:64:99:128,0,640 0/1:61,10:71:99:203,0,634 0/1:75,4:79:18:18,0,755 0/1:54,17:71:99:423,0,533 +chr15 49052529 . A T 108.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.896;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.4845;MLEAC=4;MLEAF=0.500;MQ=26.74;MQ0=0;MQRankSum=1.437;QD=1.75;ReadPosRankSum=1.944;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:45:45,0,106 0/1:20,2:22:35:35,0,157 0/1:12,2:14:28:28,0,152 0/1:7,2:9:43:43,0,50 +chr15 49088486 rs28709186 T C 90.27 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.204;DB;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7353;MLEAC=4;MLEAF=0.500;MQ=23.18;MQ0=0;MQRankSum=0.041;QD=6.94;ReadPosRankSum=0.694;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,4:4:6:71,6,0 0/1:6,3:9:61:61,0,88 0/0:2,3:5:3:0,3,43 0/0:1,0:1:3:0,3,33 +chr15 49148356 rs16961733 C A 2158.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.546;DB;DP=112;Dels=0.01;FS=7.519;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=37.48;MQ0=0;MQRankSum=-4.485;QD=19.27;ReadPosRankSum=0.003;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,33:34:99:1241,99,0 0/1:21,13:34:99:411,0,709 0/1:15,12:27:99:400,0,489 0/1:10,6:16:99:152,0,356 +chr15 50152583 rs4774549 G T 7408.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.467;DB;DP=206;Dels=0.00;FS=4.122;HaplotypeScore=2.1817;MLEAC=8;MLEAF=1.00;MQ=40.42;MQ0=0;MQRankSum=2.846;QD=35.96;ReadPosRankSum=2.134;SB=-2.815e+03 GT:AD:DP:GQ:PL 1/1:8,48:56:99:1988,114,0 1/1:4,49:53:99:1978,124,0 1/1:6,55:61:99:2205,109,0 1/1:4,32:36:93:1237,93,0 +chr15 50303048 . A T 57.63 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.214;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.4818;MLEAC=5;MLEAF=0.625;MQ=32.28;MQ0=0;MQRankSum=-1.592;QD=0.98;ReadPosRankSum=1.409;SB=-7.565e-01 GT:AD:DP:GQ:PL 0/1:10,1:11:22:22,0,61 0/1:23,2:25:4:4,0,471 0/1:18,3:21:34:34,0,290 1/1:1,1:2:3:39,3,0 +chr15 50489759 . T G 45.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.189;DP=178;Dels=0.00;FS=42.197;HaplotypeScore=2.2947;MLEAC=1;MLEAF=0.125;MQ=37.55;MQ0=0;MQRankSum=-2.205;QD=2.56;ReadPosRankSum=1.859;SB=-5.130e+00 GT:AD:DP:GQ:PL 0/0:54,2:56:69:0,69,1475 0/0:51,1:52:87:0,87,1521 0/0:50,2:52:49:0,49,1140 0/1:14,4:18:82:82,0,369 +chr15 50550621 . T C 56.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.840;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7259;MLEAC=3;MLEAF=0.375;MQ=33.93;MQ0=0;MQRankSum=-0.403;QD=1.29;ReadPosRankSum=0.018;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:28:28,0,335 0/1:12,2:14:38:38,0,210 0/0:11,0:11:21:0,21,232 0/1:12,2:14:34:34,0,228 +chr15 50557738 rs854163 G A 391 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.069;DB;DP=69;Dels=0.00;FS=1.414;HaplotypeScore=5.9014;MLEAC=4;MLEAF=0.500;MQ=32.11;MQ0=0;MQRankSum=-0.228;QD=5.67;ReadPosRankSum=0.410;SB=-1.260e+02 GT:AD:DP:GQ:PL 0/1:10,8:18:7:243,0,7 0/1:16,3:19:75:75,0,361 0/1:10,2:12:33:33,0,337 0/1:16,4:20:82:82,0,235 +chr15 50904632 rs17702205 A T 183.59 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.549;DB;DP=24;Dels=0.00;FS=2.793;HaplotypeScore=1.0121;MLEAC=5;MLEAF=0.625;MQ=31.15;MQ0=0;MQRankSum=-0.420;QD=7.65;ReadPosRankSum=-0.226;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:32:32,0,190 0/1:3,3:6:88:88,0,109 0/1:4,2:6:67:67,0,70 1/1:2,1:3:3:39,3,0 +chr15 50926619 . C A 219.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.451;DP=102;Dels=0.01;FS=18.853;HaplotypeScore=13.3596;MLEAC=4;MLEAF=0.500;MQ=27.22;MQ0=0;MQRankSum=-0.529;QD=2.15;ReadPosRankSum=1.383;SB=-2.317e-02 GT:AD:DP:GQ:PL 0/1:18,1:20:22:22,0,120 0/1:21,5:26:93:93,0,252 0/1:27,4:32:63:63,0,370 0/1:17,5:23:84:84,0,165 +chr15 51294832 rs3825798 G A 4331.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.054;DB;DP=184;Dels=0.01;FS=20.158;HaplotypeScore=4.1303;MLEAC=7;MLEAF=0.875;MQ=31.96;MQ0=0;MQRankSum=-0.723;QD=23.54;ReadPosRankSum=1.922;SB=-1.840e+02 GT:AD:DP:GQ:PL 0/1:36,18:54:99:482,0,994 1/1:8,39:47:90:1328,90,0 1/1:3,46:49:99:1526,102,0 1/1:3,29:32:87:995,87,0 +chr15 51692692 . T G 478.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.740;DP=187;Dels=0.00;FS=104.825;HaplotypeScore=7.0228;MLEAC=4;MLEAF=0.500;MQ=35.23;MQ0=0;MQRankSum=-6.526;QD=2.56;ReadPosRankSum=0.349;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:45,9:54:99:164,0,1220 0/1:40,10:50:99:120,0,1247 0/1:46,7:53:63:63,0,1343 0/1:21,9:30:99:174,0,461 +chr15 51745819 . T G 128.88 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.028;DP=122;Dels=0.00;FS=2.306;HaplotypeScore=3.3550;MLEAC=2;MLEAF=0.250;MQ=33.84;MQ0=0;MQRankSum=-3.611;QD=1.61;ReadPosRankSum=-1.314;SB=0.736 GT:AD:DP:GQ:PL 0/0:31,3:34:10:0,10,731 0/1:33,9:42:99:103,0,701 0/1:32,6:38:67:67,0,752 0/0:8,0:8:18:0,18,214 +chr15 51856190 rs145351990 GA G 1091.66 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.657;DB;DP=93;FS=0.000;HaplotypeScore=12.5028;MLEAC=5;MLEAF=0.625;MQ=32.30;MQ0=0;MQRankSum=-1.514;QD=11.74;RPA=7,6;RU=A;ReadPosRankSum=0.983;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:10,18:22:26:507,26,0 0/1:19,7:26:99:286,0,251 0/1:20,12:30:99:340,0,389 0/1:6,0:6:13:13,0,152 +chr15 51856438 . T G 206.68 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.892;DP=66;Dels=0.00;FS=12.134;HaplotypeScore=10.7341;MLEAC=3;MLEAF=0.500;MQ=24.79;MQ0=0;MQRankSum=-1.366;QD=3.28;ReadPosRankSum=2.167;SB=0.986 GT:AD:DP:GQ:PL 0/1:14,6:20:93:128,0,93 0/1:17,5:22:99:107,0,183 0/1:16,3:21:10:10,0,120 ./. +chr15 51981317 . T C 89.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.917;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=8.9148;MLEAC=4;MLEAF=0.500;MQ=16.90;MQ0=0;MQRankSum=1.740;QD=1.70;ReadPosRankSum=-0.730;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:21:69,0,21 0/1:12,2:14:17:17,0,17 0/1:12,5:17:19:19,0,19 0/1:3,1:4:16:27,0,16 +chr15 52153397 rs2623271 G C 938.57 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.746;DB;DP=52;Dels=0.00;FS=12.727;HaplotypeScore=0.8626;MLEAC=7;MLEAF=0.875;MQ=27.85;MQ0=0;MQRankSum=0.495;QD=18.05;ReadPosRankSum=1.600;SB=-3.120e+02 GT:AD:DP:GQ:PL 0/1:11,5:16:99:153,0,149 1/1:3,9:12:27:294,27,0 1/1:2,12:14:27:298,27,0 1/1:1,9:10:21:238,21,0 +chr15 52252027 . A T 32.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.393;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.7159;MLEAC=2;MLEAF=0.250;MQ=32.78;MQ0=0;MQRankSum=-0.456;QD=0.59;ReadPosRankSum=2.215;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:40,3:43:34:34,0,672 0/0:41,2:44:41:0,41,902 0/0:45,1:47:46:0,46,684 0/1:10,2:12:35:40,0,35 +chr15 52500739 . G T 211.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.343;DP=94;Dels=0.00;FS=7.546;HaplotypeScore=5.8011;MLEAC=4;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=-0.158;QD=2.25;ReadPosRankSum=-0.806;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,1:17:3:3,0,244 0/1:19,3:22:59:59,0,186 0/1:34,4:38:68:68,0,398 0/1:11,6:17:50:122,0,50 +chr15 52516942 rs11070886 C A 120.76 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.731;DB;DP=9;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=24.65;MQ0=0;MQRankSum=0.731;QD=24.15;ReadPosRankSum=-0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:44,3,0 1/1:0,3:3:9:111,9,0 ./. ./. +chr15 52622539 . A C 162.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.986;DP=136;Dels=0.00;FS=23.491;HaplotypeScore=4.2217;MLEAC=3;MLEAF=0.375;MQ=36.05;MQ0=0;MQRankSum=-0.139;QD=1.36;ReadPosRankSum=-1.440;SB=-2.884e+00 GT:AD:DP:GQ:PL 0/1:38,3:41:2:2,0,946 0/1:31,6:37:99:121,0,758 0/1:37,5:42:80:80,0,832 0/0:16,0:16:36:0,36,435 +chr15 52643589 . C T 61.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.222;DP=179;Dels=0.00;FS=55.399;HaplotypeScore=8.6516;MLEAC=3;MLEAF=0.375;MQ=33.52;MQ0=0;MQRankSum=-3.587;QD=0.46;ReadPosRankSum=-1.185;SB=-2.894e+00 GT:AD:DP:GQ:PL 0/1:39,6:45:49:49,0,1023 0/0:44,2:46:67:0,67,1126 0/1:45,4:49:2:2,0,1051 0/1:33,6:39:51:51,0,733 +chr15 52688649 . A T 53.69 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.708;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.6108;MLEAC=5;MLEAF=0.625;MQ=20.84;MQ0=0;MQRankSum=1.901;QD=1.45;ReadPosRankSum=0.708;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:7,1:8:3:26,3,0 0/1:12,2:14:17:35,0,17 0/1:8,1:9:8:8,0,101 1/1:5,1:6:3:26,3,0 +chr15 53049880 . A T 459.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.567;DP=163;Dels=0.01;FS=32.575;HaplotypeScore=27.6611;MLEAC=4;MLEAF=0.500;MQ=23.38;MQ0=0;MQRankSum=-3.034;QD=2.82;ReadPosRankSum=4.536;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:33,13:47:99:189,0,313 0/1:29,9:39:75:75,0,325 0/1:31,7:38:96:96,0,361 0/1:24,13:37:99:142,0,240 +chr15 53093260 rs2440375 C A 45.03 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.58;MQ0=0;MQRankSum=0.736;QD=15.01;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 0/1:1,2:3:22:75,0,22 ./. +chr15 54529629 rs7162346 T C 1400.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.733;DB;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=0.7457;MLEAC=5;MLEAF=0.625;MQ=34.73;MQ0=0;MQRankSum=-4.025;QD=18.93;ReadPosRankSum=0.291;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,21:22:41:709,41,0 0/1:13,10:23:99:306,0,414 0/1:13,11:24:99:344,0,411 0/1:1,3:4:30:87,0,30 +chr15 55619796 rs2290344 T C 2273.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.016;DB;DP=235;Dels=0.00;FS=2.506;HaplotypeScore=1.3449;MLEAC=3;MLEAF=0.375;MQ=37.46;MQ0=0;MQRankSum=-2.666;QD=13.70;ReadPosRankSum=1.453;SB=-1.033e+03 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,199,2567 0/1:45,26:71:99:841,0,1354 0/1:30,36:66:99:1179,0,864 0/1:19,10:29:99:297,0,617 +chr15 55839395 . T A 33.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.140;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=4.0929;MLEAC=4;MLEAF=0.500;MQ=31.80;MQ0=0;MQRankSum=-0.901;QD=0.87;ReadPosRankSum=1.381;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,3:17:39:39,0,250 0/0:15,1:16:0:0,0,333 0/1:13,1:14:8:8,0,168 0/1:6,1:7:26:26,0,63 +chr15 55916551 . T C 132.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.868;DP=178;Dels=0.00;FS=57.782;HaplotypeScore=4.1711;MLEAC=3;MLEAF=0.375;MQ=38.51;MQ0=0;MQRankSum=-3.494;QD=1.05;ReadPosRankSum=0.301;SB=0.504 GT:AD:DP:GQ:PL 0/1:36,3:39:13:13,0,1158 0/0:50,2:52:66:0,66,1638 0/1:48,9:57:99:136,0,1544 0/1:26,3:30:26:26,0,799 +chr15 57384076 . C A 101.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.223;DP=165;Dels=0.01;FS=11.306;HaplotypeScore=2.5059;MLEAC=2;MLEAF=0.250;MQ=33.52;MQ0=0;MQRankSum=-2.654;QD=1.43;ReadPosRankSum=1.292;SB=-6.594e+00 GT:AD:DP:GQ:PL 0/1:40,3:43:4:4,0,933 0/0:33,2:35:60:0,60,978 0/0:54,4:58:2:0,2,1221 0/1:21,6:27:99:134,0,361 +chr15 57809118 . T C 32.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.428;DP=147;Dels=0.00;FS=27.299;HaplotypeScore=2.3103;MLEAC=2;MLEAF=0.250;MQ=40.85;MQ0=0;MQRankSum=-0.464;QD=0.43;ReadPosRankSum=-1.781;SB=-2.499e-01 GT:AD:DP:GQ:PL 0/0:24,1:25:42:0,42,842 0/1:31,3:34:12:12,0,945 0/0:44,2:46:68:0,68,1400 0/1:38,4:42:61:61,0,1057 +chr15 57838227 . G C 115.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.849;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3965;MLEAC=3;MLEAF=0.375;MQ=25.34;MQ0=0;MQRankSum=-0.253;QD=3.39;ReadPosRankSum=1.109;SB=-1.185e-02 GT:AD:DP:GQ:PL 0/1:5,4:9:72:72,0,87 0/0:6,1:7:12:0,12,107 0/1:12,4:16:36:36,0,112 0/1:6,3:9:50:50,0,100 +chr15 57848172 . T G 35.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.910;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7124;MLEAC=2;MLEAF=0.250;MQ=22.06;MQ0=0;MQRankSum=1.860;QD=1.19;ReadPosRankSum=1.278;SB=0.177 GT:AD:DP:GQ:PL 0/0:21,0:21:12:0,12,96 0/1:16,3:19:51:51,0,101 0/0:26,0:26:27:0,27,286 0/1:10,1:11:26:26,0,31 +chr15 58256296 rs4646625 C T 1400.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.819;DB;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9093;MLEAC=5;MLEAF=0.625;MQ=36.84;MQ0=0;MQRankSum=1.371;QD=21.55;ReadPosRankSum=-0.364;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:1,20:21:57:771,57,0 0/1:7,6:13:99:167,0,213 0/1:10,7:17:99:234,0,321 0/1:6,8:14:99:274,0,134 +chr15 58471626 rs17821117 G A 183.03 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.115;DB;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.9994;MLEAC=3;MLEAF=0.375;MQ=30.30;MQ0=0;MQRankSum=0.070;QD=9.63;ReadPosRankSum=0.775;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/0:6,0:6:15:0,15,213 0/1:4,3:7:30:102,0,30 0/1:3,3:6:48:86,0,48 1/1:5,1:6:3:39,3,0 +chr15 58853307 rs4774305 C G 931.31 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.550;DB;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.1446;MLEAC=8;MLEAF=1.00;MQ=28.10;MQ0=0;MQRankSum=1.641;QD=23.28;ReadPosRankSum=-0.912;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,13:14:27:330,27,0 1/1:0,10:10:18:207,18,0 1/1:1,12:13:30:363,30,0 1/1:1,2:3:6:70,6,0 +chr15 59517042 . G A 480.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.816;DP=94;Dels=0.03;FS=51.354;HaplotypeScore=10.2616;MLEAC=4;MLEAF=0.500;MQ=30.54;MQ0=0;MQRankSum=-1.051;QD=5.11;ReadPosRankSum=0.181;SB=0.031 GT:AD:DP:GQ:PL 0/1:17,6:23:99:143,0,289 0/1:20,5:25:99:100,0,384 0/1:21,8:29:99:169,0,397 0/1:10,4:14:99:111,0,124 +chr15 60164785 . A T 51.71 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.494;DP=68;Dels=0.01;FS=28.028;HaplotypeScore=3.1086;MLEAC=3;MLEAF=0.375;MQ=22.21;MQ0=0;MQRankSum=1.503;QD=1.12;ReadPosRankSum=0.545;SB=4.72 GT:AD:DP:GQ:PL 0/1:15,2:17:13:13,0,159 0/0:22,0:22:9:0,9,100 0/1:17,2:19:54:54,0,102 0/1:8,1:9:27:27,0,61 +chr15 60297482 . A G 51.14 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.477;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=6.9662;MLEAC=5;MLEAF=0.625;MQ=17.62;MQ0=0;MQRankSum=1.212;QD=1.89;ReadPosRankSum=1.318;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:3:0,3,24 1/1:8,1:9:3:28,3,0 0/1:9,2:11:18:18,0,19 1/1:5,2:7:6:48,6,0 +chr15 60345698 rs62003056 C A 498.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.724;DB;DP=42;Dels=0.00;FS=1.272;HaplotypeScore=0.7485;MLEAC=4;MLEAF=0.500;MQ=33.06;MQ0=0;MQRankSum=2.071;QD=11.87;ReadPosRankSum=1.109;SB=-2.700e+02 GT:AD:DP:GQ:PL 0/1:6,5:11:87:169,0,87 0/1:9,3:12:93:93,0,164 0/1:10,4:14:99:132,0,225 0/1:1,4:5:27:147,0,27 +chr15 60803405 . A G 43.09 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.836;DP=77;Dels=0.01;FS=2.369;HaplotypeScore=7.8511;MLEAC=1;MLEAF=0.125;MQ=30.61;MQ0=0;MQRankSum=-1.907;QD=1.87;ReadPosRankSum=0.078;SB=0.611 GT:AD:DP:GQ:PL 0/0:16,0:16:36:0,36,387 0/0:15,1:16:11:0,11,309 0/0:22,0:22:48:0,48,527 0/1:17,5:22:79:79,0,321 +chr15 62176312 . A T 39.96 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.222;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.3183;MLEAC=4;MLEAF=0.500;MQ=22.99;MQ0=0;MQRankSum=-0.436;QD=1.54;ReadPosRankSum=-0.436;SB=-5.184e-01 GT:AD:DP:GQ:PL 0/1:7,2:9:16:40,0,16 1/1:6,1:7:3:34,3,0 0/1:9,1:10:8:8,0,126 0/0:3,1:4:6:0,6,59 +chr15 62239468 . C T 310.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.897;DP=93;Dels=0.03;FS=108.813;HaplotypeScore=22.4584;MLEAC=4;MLEAF=0.500;MQ=25.62;MQ0=0;MQRankSum=-3.723;QD=3.34;ReadPosRankSum=1.869;SB=-2.829e-01 GT:AD:DP:GQ:PL 0/1:12,10:22:99:117,0,256 0/1:17,8:25:54:54,0,329 0/1:22,11:34:99:114,0,404 0/1:4,5:9:30:68,0,30 +chr15 62560670 . A G 267.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.088;DP=90;Dels=0.00;FS=1.716;HaplotypeScore=2.4400;MLEAC=3;MLEAF=0.375;MQ=22.68;MQ0=0;MQRankSum=1.983;QD=4.32;ReadPosRankSum=0.519;SB=0.551 GT:AD:DP:GQ:PL 0/1:18,2:20:26:26,0,33 0/1:21,8:29:99:133,0,101 0/0:27,1:28:9:0,9,94 0/1:8,5:13:4:151,0,4 +chr15 62989789 rs11629976 A G 1156.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.219;DB;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.8385;MLEAC=3;MLEAF=0.375;MQ=38.90;MQ0=0;MQRankSum=-1.575;QD=10.91;ReadPosRankSum=2.949;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,111,1467 0/1:25,11:36:99:351,0,871 0/1:24,16:40:99:524,0,817 0/1:19,11:30:99:325,0,662 +chr15 63008545 . C T 86.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.039;DP=60;Dels=0.03;FS=73.154;HaplotypeScore=12.9618;MLEAC=4;MLEAF=0.500;MQ=26.77;MQ0=0;MQRankSum=-1.664;QD=1.45;ReadPosRankSum=2.068;SB=-1.180e+00 GT:AD:DP:GQ:PL 0/1:11,3:14:14:14,0,257 0/1:14,4:18:51:51,0,213 0/1:11,4:15:42:42,0,212 0/1:8,3:11:22:22,0,121 +chr15 63019402 . C A 70.96 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.588;DP=45;Dels=0.04;FS=0.000;HaplotypeScore=6.1960;MLEAC=2;MLEAF=0.250;MQ=23.88;MQ0=0;MQRankSum=-0.140;QD=2.63;ReadPosRankSum=-1.148;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,1:14:12:12,0,134 0/0:8,0:8:9:0,9,104 0/1:9,4:13:16:98,0,16 0/0:7,1:8:3:0,3,23 +chr15 63937209 rs2229749 C G 10253.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.515;DB;DP=287;Dels=0.00;FS=1.526;HaplotypeScore=2.4614;MLEAC=8;MLEAF=1.00;MQ=37.21;MQ0=0;MQRankSum=-0.831;QD=35.72;ReadPosRankSum=4.477;SB=-4.151e+03 GT:AD:DP:GQ:PL 1/1:5,65:70:99:2511,105,0 1/1:4,78:82:99:2951,169,0 1/1:1,85:86:99:3208,225,0 1/1:2,46:48:99:1583,105,0 +chr15 63970456 rs2228510 T C 3568.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.973;DB;DP=235;Dels=0.00;FS=10.955;HaplotypeScore=3.6577;MLEAC=5;MLEAF=0.625;MQ=37.50;MQ0=0;MQRankSum=-0.704;QD=15.18;ReadPosRankSum=3.726;SB=-1.499e+03 GT:AD:DP:GQ:PL 0/1:38,30:68:99:954,0,1252 1/1:5,39:44:89:1488,89,0 0/1:46,29:75:99:884,0,1274 0/1:38,10:48:99:242,0,1187 +chr15 64008725 . T G 62.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.268;DP=91;Dels=0.00;FS=2.410;HaplotypeScore=3.2785;MLEAC=2;MLEAF=0.250;MQ=18.46;MQ0=0;MQRankSum=1.769;QD=1.07;ReadPosRankSum=2.646;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,2:26:29:29,0,105 0/0:21,1:22:15:0,15,129 0/1:29,4:33:74:74,0,108 0/0:10,0:10:3:0,3,41 +chr15 64415841 . T G 32.37 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.622;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.4945;MLEAC=2;MLEAF=0.250;MQ=34.32;MQ0=0;MQRankSum=-1.241;QD=0.72;ReadPosRankSum=0.610;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,4:29:56:56,0,709 0/0:22,2:24:7:0,7,637 0/0:23,0:23:54:0,54,617 0/1:14,2:16:17:17,0,405 +chr15 64426782 . G A 138.65 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.396;DP=32;Dels=0.03;FS=6.043;HaplotypeScore=4.0439;MLEAC=5;MLEAF=0.625;MQ=22.38;MQ0=0;MQRankSum=1.030;QD=4.33;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:49:49,0,55 0/1:4,3:7:18:75,0,18 0/1:6,1:8:22:22,0,34 1/1:4,1:5:3:35,3,0 +chr15 64448202 . A C 389.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.365;DP=148;Dels=0.00;FS=70.212;HaplotypeScore=1.7798;MLEAC=4;MLEAF=0.500;MQ=35.66;MQ0=0;MQRankSum=-3.818;QD=2.63;ReadPosRankSum=-0.870;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:36,5:41:75:75,0,906 0/1:21,7:29:99:103,0,641 0/1:37,5:42:68:68,0,964 0/1:26,10:36:99:186,0,725 +chr15 65107759 rs17208301 C T 227.54 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.567;DB;DP=40;Dels=0.00;FS=8.346;HaplotypeScore=1.5613;MLEAC=3;MLEAF=0.375;MQ=22.08;MQ0=0;MQRankSum=2.064;QD=7.11;ReadPosRankSum=0.419;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,6:12:99:138,0,133 0/1:4,3:7:47:47,0,50 0/0:8,0:8:9:0,9,107 0/1:10,3:13:10:85,0,10 +chr15 65187969 rs72737218 G A 43.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.720;DB;DP=8;Dels=0.00;FS=9.700;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=17.14;MQ0=0;MQRankSum=1.380;QD=7.17;ReadPosRankSum=-0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:3,1:4:3:38,3,0 ./. 1/1:1,1:2:3:38,3,0 +chr15 65489688 rs2679117 T C 5910.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.548;DB;DP=179;Dels=0.01;FS=4.834;HaplotypeScore=0.9809;MLEAC=8;MLEAF=1.00;MQ=36.80;MQ0=0;MQRankSum=1.910;QD=33.02;ReadPosRankSum=1.949;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:6,44:50:99:1679,132,0 1/1:8,37:45:50:1363,50,0 1/1:5,43:48:99:1745,129,0 1/1:5,30:35:87:1123,87,0 +chr15 65495748 . G T 68.11 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.999;DP=186;Dels=0.00;FS=14.922;HaplotypeScore=3.1785;MLEAC=1;MLEAF=0.125;MQ=32.60;MQ0=0;MQRankSum=-2.319;QD=1.79;ReadPosRankSum=-1.651;SB=-4.469e+00 GT:AD:DP:GQ:PL 0/0:47,1:48:48:0,48,905 0/0:40,3:44:10:0,10,794 0/0:55,1:56:92:0,92,1331 0/1:33,5:38:99:104,0,491 +chr15 65496587 rs2585034 C T 2177.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.165;DB;DP=91;Dels=0.00;FS=26.544;HaplotypeScore=0.2498;MLEAC=7;MLEAF=0.875;MQ=34.45;MQ0=0;MQRankSum=-1.890;QD=23.93;ReadPosRankSum=1.242;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,13:15:39:504,39,0 0/1:19,11:30:99:311,0,548 1/1:4,23:27:40:820,40,0 1/1:3,16:19:48:587,48,0 +chr15 65621825 . C G 35.89 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.285;DP=45;Dels=0.02;FS=2.572;HaplotypeScore=14.7697;MLEAC=2;MLEAF=0.250;MQ=26.21;MQ0=0;MQRankSum=-0.855;QD=1.99;ReadPosRankSum=0.855;SB=0.223 GT:AD:DP:GQ:PL 0/0:13,0:13:27:0,27,262 0/1:9,3:12:60:60,0,73 0/0:13,0:13:18:0,18,206 0/1:5,1:6:17:17,0,66 +chr15 65685842 . C A 79.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.867;DP=125;Dels=0.01;FS=28.080;HaplotypeScore=1.8196;MLEAC=2;MLEAF=0.250;MQ=36.09;MQ0=0;MQRankSum=-1.088;QD=1.19;ReadPosRankSum=1.050;SB=-8.614e-01 GT:AD:DP:GQ:PL 0/0:27,0:27:60:0,60,720 0/1:36,5:41:92:92,0,688 0/0:30,1:31:37:0,37,745 0/1:23,2:25:29:29,0,491 +chr15 65982726 . A C 402.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.943;DP=225;Dels=0.00;FS=45.320;HaplotypeScore=9.5359;MLEAC=3;MLEAF=0.375;MQ=31.44;MQ0=0;MQRankSum=-8.886;QD=1.99;ReadPosRankSum=1.149;SB=1.42 GT:AD:DP:GQ:PL 0/1:47,20:67:99:205,0,1392 0/1:55,22:77:99:205,0,1203 0/1:45,13:58:35:35,0,1176 0/0:19,4:23:9:0,9,405 +chr15 66044914 . T C 86.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.210;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=17.1470;MLEAC=3;MLEAF=0.375;MQ=25.07;MQ0=0;MQRankSum=-1.581;QD=1.08;ReadPosRankSum=0.915;SB=0.282 GT:AD:DP:GQ:PL 0/0:30,1:31:12:0,12,350 0/1:28,6:34:66:66,0,253 0/1:22,2:24:41:41,0,96 0/1:19,1:21:19:22,0,19 +chr15 66044915 . C A 389.78 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.237;DP=113;Dels=0.00;FS=12.025;HaplotypeScore=16.1645;MLEAC=4;MLEAF=0.500;MQ=25.03;MQ0=0;MQRankSum=2.119;QD=3.45;ReadPosRankSum=0.871;SB=-3.171e+00 GT:AD:DP:GQ:PL 1/1:21,10:31:1:273,1,0 0/1:30,5:35:99:104,0,142 0/1:22,2:25:17:17,0,66 0/1:17,3:22:24:37,0,24 +chr15 66210287 . A G 32.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.151;DP=145;Dels=0.03;FS=10.868;HaplotypeScore=9.3125;MLEAC=1;MLEAF=0.125;MQ=37.26;MQ0=0;MQRankSum=-1.079;QD=0.92;ReadPosRankSum=-1.376;SB=-7.773e-03 GT:AD:DP:GQ:PL 0/0:36,0:36:75:0,75,944 0/0:33,1:34:46:0,46,877 0/0:37,0:37:63:0,63,780 0/1:29,5:34:69:69,0,642 +chr15 66220982 . T G 39.07 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.039;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.6817;MLEAC=3;MLEAF=0.375;MQ=32.79;MQ0=0;MQRankSum=0.426;QD=1.12;ReadPosRankSum=-0.116;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:51:51,0,169 0/1:6,1:7:22:22,0,54 0/1:12,1:13:6:6,0,198 0/0:4,0:4:3:0,3,29 +chr15 66249944 . G T 46.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.300;DP=64;Dels=0.02;FS=15.239;HaplotypeScore=12.7301;MLEAC=2;MLEAF=0.250;MQ=25.71;MQ0=0;MQRankSum=-1.261;QD=1.37;ReadPosRankSum=0.340;SB=-3.206e+00 GT:AD:DP:GQ:PL 0/0:13,0:13:15:0,15,150 0/1:14,3:17:49:49,0,161 0/0:16,1:17:24:0,24,235 0/1:14,2:16:18:39,0,18 +chr15 66262924 . T A 53.04 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.062;DP=156;Dels=0.01;FS=33.916;HaplotypeScore=6.8183;MLEAC=1;MLEAF=0.125;MQ=28.85;MQ0=0;MQRankSum=-1.374;QD=1.43;ReadPosRankSum=-0.685;SB=-3.846e+00 GT:AD:DP:GQ:PL 0/0:30,1:31:63:0,63,665 0/0:40,2:42:32:0,32,637 0/0:43,2:45:14:0,14,839 0/1:32,5:37:89:89,0,436 +chr15 66786916 . T C 87.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.401;DP=133;Dels=0.01;FS=2.248;HaplotypeScore=3.9887;MLEAC=2;MLEAF=0.250;MQ=34.33;MQ0=0;MQRankSum=-1.045;QD=1.14;ReadPosRankSum=1.624;SB=0.828 GT:AD:DP:GQ:PL 0/0:33,1:34:23:0,23,475 0/1:35,5:40:92:92,0,449 0/1:34,3:37:36:36,0,471 0/0:20,1:21:4:0,4,382 +chr15 66829396 rs12439324 T G 40.18 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.067;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.250;MQ=36.36;MQ0=0;MQRankSum=0.572;QD=13.39;ReadPosRankSum=-1.589;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:12:0,12,145 0/1:1,2:3:30:73,0,30 ./. ./. +chr15 67476986 . C A 127.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.739;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=6.8042;MLEAC=4;MLEAF=0.500;MQ=21.72;MQ0=0;MQRankSum=-1.423;QD=8.47;ReadPosRankSum=2.055;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,2:5:3:0,3,23 0/1:3,6:9:31:77,0,31 1/1:2,4:6:9:93,9,0 0/0:3,0:4:3:0,3,27 +chr15 67652097 rs3743349 G C 652.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.145;DB;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.1770;MLEAC=3;MLEAF=0.375;MQ=26.66;MQ0=0;MQRankSum=1.762;QD=10.88;ReadPosRankSum=-1.142;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,10:15:28:263,0,28 0/0:25,0:25:57:0,57,623 0/1:19,14:33:99:375,0,297 0/1:9,3:12:58:58,0,135 +chr15 67664453 . T G 501.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.995;DP=115;Dels=0.01;FS=34.790;HaplotypeScore=4.4077;MLEAC=4;MLEAF=0.500;MQ=29.61;MQ0=0;MQRankSum=-3.411;QD=4.36;ReadPosRankSum=2.630;SB=-1.075e-02 GT:AD:DP:GQ:PL 0/1:20,5:25:76:76,0,266 0/1:29,8:37:99:187,0,352 0/1:27,13:40:99:230,0,403 0/1:10,2:12:51:51,0,96 +chr15 67757764 rs2414957 T C 766.39 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.246;DB;DP=25;Dels=0.00;FS=10.792;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=31.68;MQ0=0;MQRankSum=2.246;QD=30.66;ReadPosRankSum=0.574;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,4:4:12:149,12,0 1/1:0,6:6:18:214,18,0 1/1:0,10:10:30:366,30,0 1/1:3,2:5:6:76,6,0 +chr15 67885291 . A T 414.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.447;DP=76;Dels=0.00;FS=63.213;HaplotypeScore=4.3750;MLEAC=4;MLEAF=0.500;MQ=30.24;MQ0=0;MQRankSum=0.159;QD=5.46;ReadPosRankSum=-0.969;SB=-2.091e+00 GT:AD:DP:GQ:PL 0/1:13,5:18:79:116,0,79 0/1:15,5:20:99:113,0,171 0/1:24,5:29:99:122,0,306 0/1:5,4:9:92:106,0,92 +chr15 67938849 . A C 101.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.551;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.9893;MLEAC=2;MLEAF=0.250;MQ=33.18;MQ0=0;MQRankSum=0.159;QD=1.95;ReadPosRankSum=-0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:29,1:30:28:0,28,618 0/1:37,5:42:57:57,0,901 0/0:38,2:40:49:0,49,1002 0/1:7,3:10:86:86,0,86 +chr15 67950842 . T G 130.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.626;DP=93;Dels=0.01;FS=2.390;HaplotypeScore=4.4388;MLEAC=3;MLEAF=0.375;MQ=30.68;MQ0=0;MQRankSum=-0.616;QD=1.97;ReadPosRankSum=3.243;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,3:25:45:45,0,380 0/0:24,1:26:5:0,5,275 0/1:28,5:33:95:95,0,305 0/1:7,1:8:20:32,0,20 +chr15 68099276 . A C 33.85 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.659;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9919;MLEAC=1;MLEAF=0.125;MQ=28.89;MQ0=0;MQRankSum=-0.592;QD=2.82;ReadPosRankSum=-1.066;SB=0.164 GT:AD:DP:GQ:PL 0/0:10,0:10:12:0,12,170 0/0:12,0:12:9:0,9,98 0/1:9,3:12:69:69,0,70 0/0:10,0:10:3:0,3,44 +chr15 68122509 rs28587941 T C 1127.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.268;DB;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5320;MLEAC=3;MLEAF=0.375;MQ=35.86;MQ0=0;MQRankSum=-3.674;QD=13.43;ReadPosRankSum=0.626;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,11:29:99:353,0,496 0/0:34,0:34:99:0,102,1330 0/1:12,20:32:99:666,0,394 0/1:16,7:23:99:152,0,499 +chr15 68490035 . T C 34.48 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.861;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=9.9710;MLEAC=2;MLEAF=0.250;MQ=22.05;MQ0=0;MQRankSum=1.244;QD=1.92;ReadPosRankSum=-0.478;SB=10.97 GT:AD:DP:GQ:PL 0/1:8,2:10:47:47,0,63 0/0:10,0:12:6:0,6,52 0/1:6,1:8:17:28,0,17 0/0:10,0:11:12:0,12,119 +chr15 68500500 . A C 98.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.110;DP=93;Dels=0.02;FS=0.000;HaplotypeScore=11.6859;MLEAC=3;MLEAF=0.375;MQ=28.48;MQ0=0;MQRankSum=0.407;QD=1.36;ReadPosRankSum=-0.454;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,1:20:13:0,13,386 0/1:20,2:22:22:22,0,378 0/1:23,3:26:50:50,0,451 0/1:20,3:23:69:69,0,291 +chr15 68649454 . C G 38.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.871;DP=65;Dels=0.02;FS=17.482;HaplotypeScore=24.7250;MLEAC=3;MLEAF=0.375;MQ=20.90;MQ0=0;MQRankSum=0.300;QD=0.83;ReadPosRankSum=-0.843;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:8:8,0,106 0/0:18,1:19:12:0,12,100 0/1:11,2:14:39:48,0,39 0/1:11,1:12:24:24,0,71 +chr15 69327825 rs311889 C T 1203.63 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.558;DB;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.5761;MLEAC=7;MLEAF=0.875;MQ=30.13;MQ0=0;MQRankSum=3.108;QD=19.11;ReadPosRankSum=0.286;SB=-5.407e+02 GT:AD:DP:GQ:PL 1/1:6,6:14:18:224,18,0 1/1:4,8:15:21:251,21,0 1/1:10,14:24:22:508,22,0 1/1:3,7:10:21:259,21,0 +chr15 69676751 . G A 53.68 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.267;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=6.7228;MLEAC=6;MLEAF=1.00;MQ=14.70;MQ0=0;MQRankSum=1.733;QD=2.33;ReadPosRankSum=0.533;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,2:6:3:22,3,0 1/1:5,1:6:3:22,3,0 1/1:4,6:10:6:45,6,0 ./. +chr15 69715487 . TC T 2033.24 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.495;DP=118;FS=30.187;HaplotypeScore=65.0273;MLEAC=6;MLEAF=0.750;MQ=23.81;MQ0=0;MQRankSum=-0.547;QD=17.23;ReadPosRankSum=2.910;SB=-6.942e+01 GT:AD:DP:GQ:PL 0/1:25,10:27:18:635,0,18 1/1:22,10:28:39:690,39,0 1/1:19,12:20:18:589,18,0 0/1:9,6:10:13:174,0,13 +chr15 70515901 . T A 34.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=11;Dels=0.00;FS=3.310;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.98;MQ0=0;MQRankSum=0.736;QD=6.95;ReadPosRankSum=-0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:3,2:5:6:66,6,0 +chr15 70992017 . A T 36.48 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.379;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.2098;MLEAC=3;MLEAF=0.375;MQ=23.47;MQ0=0;MQRankSum=1.336;QD=0.79;ReadPosRankSum=-0.698;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,2:21:29:29,0,176 0/1:17,1:18:13:13,0,156 0/0:15,0:15:12:0,12,109 1/1:6,1:7:3:38,3,0 +chr15 71184278 rs2959174 G T 281.16 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.659;DB;DP=20;Dels=0.00;FS=6.107;HaplotypeScore=0.8846;MLEAC=6;MLEAF=1.00;MQ=20.06;MQ0=0;MQRankSum=2.606;QD=15.62;ReadPosRankSum=0.237;SB=-1.236e+02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:29,3,0 ./. 1/1:1,7:8:15:151,15,0 1/1:2,7:9:15:138,15,0 +chr15 71185837 rs2955037 G A 65.28 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.614;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=0.750;MQ=17.12;MQ0=0;MQRankSum=-0.404;QD=5.02;ReadPosRankSum=-1.480;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,1:4:3:0,3,35 1/1:1,3:4:3:35,3,0 1/1:0,5:5:3:26,3,0 1/1:0,4:4:6:46,6,0 +chr15 72176148 . T A 143.34 . AC=2;AF=0.333;AN=6;BaseQRankSum=2.641;DP=34;Dels=0.00;FS=3.424;HaplotypeScore=8.3555;MLEAC=2;MLEAF=0.333;MQ=21.58;MQ0=0;MQRankSum=-0.035;QD=5.51;ReadPosRankSum=1.021;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,5:8:11:100,0,11 0/1:14,4:18:81:81,0,100 0/0:6,1:7:6:0,6,64 ./. +chr15 72191439 . C T 375.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.375;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.4913;MLEAC=4;MLEAF=0.500;MQ=33.96;MQ0=0;MQRankSum=-5.005;QD=2.35;ReadPosRankSum=2.821;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:45,10:55:99:154,0,791 0/1:42,4:46:24:24,0,1119 0/1:35,10:45:99:181,0,534 0/1:11,3:14:59:59,0,161 +chr15 72499422 . A T 125.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.809;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=6.0584;MLEAC=4;MLEAF=0.500;MQ=24.93;MQ0=0;MQRankSum=2.750;QD=2.24;ReadPosRankSum=-1.132;SB=-1.185e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:31:31,0,43 0/1:15,2:17:49:49,0,140 0/1:12,1:13:27:27,0,74 0/1:13,2:15:22:61,0,22 +chr15 72559060 rs4776589 G A 366.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.096;DB;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=0.9325;MLEAC=1;MLEAF=0.125;MQ=42.06;MQ0=0;MQRankSum=-2.365;QD=8.16;ReadPosRankSum=1.172;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,14:45:99:403,0,1057 0/0:39,0:39:99:0,114,1616 0/0:42,0:42:99:0,126,1761 0/0:32,0:32:96:0,96,1273 +chr15 72690710 . G C 80.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.605;DP=77;Dels=0.00;FS=72.426;HaplotypeScore=1.7211;MLEAC=3;MLEAF=0.375;MQ=30.43;MQ0=0;MQRankSum=-1.986;QD=1.47;ReadPosRankSum=1.219;SB=-1.121e+00 GT:AD:DP:GQ:PL 0/1:14,3:17:62:62,0,316 0/1:19,4:23:37:37,0,469 0/0:21,1:22:28:0,28,639 0/1:13,2:15:25:25,0,264 +chr15 73128184 rs2167031 A G 37.25 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.720;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=20.68;MQ0=0;MQRankSum=0.720;QD=7.45;ReadPosRankSum=0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,41 ./. 1/1:0,1:1:3:35,3,0 1/1:3,1:4:3:40,3,0 +chr15 73545732 rs2623989 T C 809.17 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.575;DB;DP=32;Dels=0.00;FS=44.521;HaplotypeScore=0.2892;MLEAC=8;MLEAF=1.00;MQ=27.33;MQ0=0;MQRankSum=3.725;QD=25.29;ReadPosRankSum=-3.775;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,6:6:18:205,18,0 1/1:3,7:10:21:250,21,0 1/1:0,9:9:24:287,24,0 1/1:4,3:7:9:106,9,0 +chr15 73562427 . A G 39.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.959;DP=295;Dels=0.00;FS=68.665;HaplotypeScore=31.9010;MLEAC=1;MLEAF=0.125;MQ=32.57;MQ0=0;MQRankSum=1.446;QD=0.75;ReadPosRankSum=-0.011;SB=-6.378e+00 GT:AD:DP:GQ:PL 0/0:73,2:75:60:0,60,1267 0/0:66,2:68:55:0,55,1234 0/0:94,4:98:47:0,47,1681 0/1:48,5:53:76:76,0,656 +chr15 73590579 rs2292915 C T 301.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.430;DB;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.2497;MLEAC=3;MLEAF=0.375;MQ=35.77;MQ0=0;MQRankSum=-1.592;QD=11.61;ReadPosRankSum=-0.344;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:15:0,15,192 0/1:7,6:13:99:198,0,137 0/1:4,4:8:99:123,0,134 0/1:4,1:5:24:24,0,116 +chr15 73616303 . A G 81.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.843;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.3188;MLEAC=3;MLEAF=0.375;MQ=26.81;MQ0=0;MQRankSum=-1.150;QD=1.82;ReadPosRankSum=1.465;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:30:30,0,242 0/0:14,0:14:21:0,21,224 0/1:17,5:22:48:48,0,253 0/1:8,2:10:47:47,0,70 +chr15 73635816 . G C 646.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.410;DP=104;Dels=0.01;FS=84.105;HaplotypeScore=2.1834;MLEAC=4;MLEAF=0.500;MQ=37.77;MQ0=0;MQRankSum=-1.468;QD=6.22;ReadPosRankSum=0.584;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:88:88,0,377 0/1:19,6:25:99:155,0,379 0/1:26,9:35:99:255,0,539 0/1:16,7:23:99:191,0,350 +chr15 73843338 . A T 217.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.542;DP=219;Dels=0.00;FS=161.134;HaplotypeScore=8.6109;MLEAC=4;MLEAF=0.500;MQ=37.09;MQ0=0;MQRankSum=-5.636;QD=0.99;ReadPosRankSum=1.949;SB=-2.735e-02 GT:AD:DP:GQ:PL 0/1:43,7:50:89:89,0,1210 0/1:43,9:52:99:112,0,1243 0/1:58,6:64:24:24,0,1643 0/1:45,7:53:35:35,0,1083 +chr15 74003556 . C G 66.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.212;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9296;MLEAC=2;MLEAF=0.250;MQ=25.62;MQ0=0;MQRankSum=0.251;QD=1.09;ReadPosRankSum=-0.352;SB=-1.187e-02 GT:AD:DP:GQ:PL 0/0:35,2:37:18:0,18,644 0/1:29,4:33:56:56,0,215 0/0:32,0:32:60:0,60,639 0/1:25,3:28:52:52,0,115 +chr15 74290630 . T TGTA 689.57 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.147;DP=51;FS=20.434;HaplotypeScore=32.7749;MLEAC=4;MLEAF=0.500;MQ=23.58;MQ0=0;MQRankSum=0.220;QD=13.52;ReadPosRankSum=-1.342;SB=-2.858e+00 GT:AD:DP:GQ:PL 0/1:5,2:3:19:103,0,19 0/1:7,4:7:41:272,0,41 0/1:9,3:8:99:206,0,108 0/1:10,3:10:99:160,0,250 +chr15 74325182 rs2304716 A G 826.30 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.589;DB;DP=26;Dels=0.00;FS=13.802;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=32.31;MQ0=0;MQRankSum=1.589;QD=31.78;ReadPosRankSum=-1.156;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,9:11:27:340,27,0 1/1:0,8:8:24:313,24,0 1/1:0,3:4:9:104,9,0 1/1:0,3:3:9:108,9,0 +chr15 74425761 . G A 86.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.084;DP=41;Dels=0.00;FS=6.410;HaplotypeScore=0.7258;MLEAC=3;MLEAF=0.375;MQ=23.07;MQ0=0;MQRankSum=-0.137;QD=2.46;ReadPosRankSum=-0.727;SB=-2.300e+01 GT:AD:DP:GQ:PL 0/0:6,0:6:12:0,12,123 0/1:6,3:9:42:42,0,78 0/1:12,3:15:47:47,0,258 0/1:9,2:11:40:40,0,99 +chr15 74425781 . C G 68.50 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.053;DP=22;Dels=0.00;FS=2.884;HaplotypeScore=0.4970;MLEAC=4;MLEAF=0.500;MQ=21.18;MQ0=0;MQRankSum=1.107;QD=5.27;ReadPosRankSum=1.423;SB=1.05 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,62 1/1:5,2:7:3:29,3,0 0/0:6,0:6:6:0,6,45 1/1:3,3:6:9:85,9,0 +chr15 74467268 . C T 41.58 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.567;DP=75;Dels=0.01;FS=8.855;HaplotypeScore=4.4520;MLEAC=1;MLEAF=0.125;MQ=29.91;MQ0=0;MQRankSum=1.785;QD=2.77;ReadPosRankSum=-2.750;SB=-4.420e+00 GT:AD:DP:GQ:PL 0/0:17,0:17:21:0,21,267 0/0:22,1:23:3:0,3,390 0/0:19,0:19:45:0,45,567 0/1:12,3:15:77:77,0,280 +chr15 74494531 . A G 31.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.632;DP=87;Dels=0.00;FS=17.639;HaplotypeScore=12.6710;MLEAC=3;MLEAF=0.375;MQ=28.40;MQ0=0;MQRankSum=0.086;QD=0.47;ReadPosRankSum=-1.408;SB=2.75 GT:AD:DP:GQ:PL 0/0:21,0:21:45:0,45,503 0/1:17,1:19:11:11,0,123 0/1:22,2:25:24:24,0,364 0/1:19,2:22:39:39,0,184 +chr15 74513563 . T G 43.66 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.647;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.1156;MLEAC=3;MLEAF=0.375;MQ=20.03;MQ0=0;MQRankSum=2.381;QD=0.77;ReadPosRankSum=-1.619;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:12:0,12,112 0/1:18,3:21:58:58,0,78 0/1:12,1:13:12:12,0,82 0/1:22,1:23:16:16,0,80 +chr15 74924876 . A T 284.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.127;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=3.4591;MLEAC=4;MLEAF=0.500;MQ=23.27;MQ0=0;MQRankSum=1.535;QD=3.90;ReadPosRankSum=2.662;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:64:64,0,83 0/1:11,3:15:59:59,0,75 0/1:12,7:19:37:143,0,37 0/1:10,5:16:56:61,0,56 +chr15 75013453 . A G 113.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.727;DP=173;Dels=0.01;FS=51.714;HaplotypeScore=12.7751;MLEAC=2;MLEAF=0.250;MQ=34.84;MQ0=0;MQRankSum=-4.515;QD=1.20;ReadPosRankSum=1.738;SB=0.425 GT:AD:DP:GQ:PL 0/1:49,8:57:74:74,0,1462 0/0:37,1:38:90:0,90,1102 0/0:38,1:39:72:0,72,1183 0/1:31,7:38:81:81,0,890 +chr15 75047038 . C A 69.29 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.854;DP=83;Dels=0.01;FS=2.884;HaplotypeScore=2.5578;MLEAC=2;MLEAF=0.250;MQ=28.04;MQ0=0;MQRankSum=0.633;QD=1.57;ReadPosRankSum=2.320;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:48:0,48,554 0/1:25,2:27:6:6,0,191 0/0:19,0:19:33:0,33,388 0/1:12,4:16:99:102,0,240 +chr15 75047426 rs2470890 C T 1554.56 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.328;DB;DP=81;Dels=0.00;FS=28.977;HaplotypeScore=1.6388;MLEAC=8;MLEAF=1.00;MQ=26.99;MQ0=0;MQRankSum=1.420;QD=19.19;ReadPosRankSum=2.255;SB=-1.986e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:30:354,30,0 1/1:9,17:26:39:417,39,0 1/1:2,19:21:45:532,45,0 1/1:8,14:22:3:290,3,0 +chr15 75092694 . A C 34.21 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.556;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.9055;MLEAC=4;MLEAF=0.500;MQ=27.07;MQ0=0;MQRankSum=-1.995;QD=1.22;ReadPosRankSum=-0.875;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:20:20,0,98 0/1:8,2:10:10:10,0,102 0/1:4,2:6:34:34,0,125 0/1:5,1:6:12:12,0,85 +chr15 75115844 . T G 205.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.432;DP=125;Dels=0.02;FS=37.850;HaplotypeScore=7.0635;MLEAC=4;MLEAF=0.500;MQ=32.98;MQ0=0;MQRankSum=-4.616;QD=1.64;ReadPosRankSum=1.801;SB=-5.504e-01 GT:AD:DP:GQ:PL 0/1:18,4:22:68:68,0,475 0/1:32,4:36:8:8,0,800 0/1:31,8:39:99:109,0,845 0/1:18,7:25:62:62,0,430 +chr15 75134483 . C T 697.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.858;DP=208;Dels=0.00;FS=260.013;HaplotypeScore=9.1942;MLEAC=4;MLEAF=0.500;MQ=35.61;MQ0=0;MQRankSum=-7.007;QD=3.35;ReadPosRankSum=4.266;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:42,12:55:99:237,0,1204 0/1:39,9:48:99:139,0,1139 0/1:44,13:57:99:226,0,1241 0/1:38,10:48:99:138,0,1199 +chr15 75188688 . A G 59.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.924;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.8503;MLEAC=3;MLEAF=0.375;MQ=29.42;MQ0=0;MQRankSum=-0.776;QD=1.28;ReadPosRankSum=-1.046;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:28:28,0,303 0/0:9,0:9:6:0,6,65 0/1:16,3:19:29:29,0,441 0/1:10,2:12:45:45,0,76 +chr15 75189930 rs1130741 A G 4363.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.588;DB;DP=170;Dels=0.00;FS=0.841;HaplotypeScore=5.1443;MLEAC=7;MLEAF=0.875;MQ=34.67;MQ0=0;MQRankSum=-2.947;QD=25.66;ReadPosRankSum=1.899;SB=-1.528e+03 GT:AD:DP:GQ:PL 0/1:24,14:38:99:365,0,748 1/1:3,41:44:99:1496,123,0 1/1:9,42:51:98:1508,98,0 1/1:9,28:37:35:994,35,0 +chr15 75508276 rs953555 A G 44.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.754;DB;DP=13;Dels=0.00;FS=11.181;HaplotypeScore=0.2892;MLEAC=4;MLEAF=1.00;MQ=17.35;MQ0=0;MQRankSum=1.754;QD=4.89;ReadPosRankSum=1.300;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:2,1:3:3:39,3,0 1/1:4,2:6:3:38,3,0 +chr15 75652070 . G C 154.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.109;DP=68;Dels=0.00;FS=7.538;HaplotypeScore=6.7643;MLEAC=4;MLEAF=0.500;MQ=32.00;MQ0=0;MQRankSum=1.136;QD=2.27;ReadPosRankSum=1.215;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:15:19:19,0,175 0/1:13,3:18:68:68,0,265 0/1:17,2:20:32:32,0,369 0/1:12,3:15:69:78,0,69 +chr15 75654298 . A G 157 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.494;DP=196;Dels=0.01;FS=2.278;HaplotypeScore=4.4543;MLEAC=3;MLEAF=0.375;MQ=33.14;MQ0=0;MQRankSum=-5.229;QD=1.04;ReadPosRankSum=-2.735;SB=-6.746e-03 GT:AD:DP:GQ:PL 0/1:42,5:47:15:15,0,988 0/0:40,4:44:30:0,30,939 0/1:40,9:49:99:138,0,779 0/1:48,6:54:47:47,0,1046 +chr15 75702226 . T A 41.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.676;DP=171;Dels=0.01;FS=55.272;HaplotypeScore=13.9482;MLEAC=3;MLEAF=0.375;MQ=32.49;MQ0=0;MQRankSum=-2.465;QD=0.30;ReadPosRankSum=-0.775;SB=0.402 GT:AD:DP:GQ:PL 0/0:30,2:34:12:0,12,746 0/1:43,7:50:28:28,0,1009 0/1:43,4:49:21:21,0,834 0/1:34,3:37:35:35,0,722 +chr15 75974954 . A T 30.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.076;DP=81;Dels=0.01;FS=4.915;HaplotypeScore=8.0115;MLEAC=3;MLEAF=0.375;MQ=15.20;MQ0=0;MQRankSum=2.300;QD=0.50;ReadPosRankSum=1.031;SB=-1.466e-01 GT:AD:DP:GQ:PL 0/1:17,2:19:33:33,0,79 0/1:19,2:21:26:26,0,116 0/0:21,0:21:6:0,6,55 0/1:17,2:19:13:13,0,39 +chr15 76031392 . A T 72.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.435;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=3;MLEAF=0.375;MQ=21.27;MQ0=0;MQRankSum=3.698;QD=1.02;ReadPosRankSum=-0.153;SB=-9.225e-01 GT:AD:DP:GQ:PL 0/1:25,3:28:66:66,0,200 0/1:18,2:21:41:41,0,48 0/1:21,1:22:6:6,0,174 0/0:17,0:17:6:0,6,45 +chr15 76462286 rs12902022 A G 790.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.224;DB;DP=137;Dels=0.01;FS=4.796;HaplotypeScore=1.9314;MLEAC=4;MLEAF=0.500;MQ=35.65;MQ0=0;MQRankSum=-0.946;QD=5.77;ReadPosRankSum=1.142;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,12:33:99:361,0,667 0/1:32,4:36:54:54,0,863 0/1:29,6:35:99:148,0,822 0/1:21,10:32:99:270,0,678 +chr15 76696926 . G T 152.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.220;DP=340;Dels=0.01;FS=3.883;HaplotypeScore=15.2169;MLEAC=1;MLEAF=0.125;MQ=33.20;MQ0=0;MQRankSum=-1.411;QD=1.96;ReadPosRankSum=-0.039;SB=-1.173e-02 GT:AD:DP:GQ:PL 0/0:81,2:84:99:0,99,1443 0/0:87,2:89:84:0,84,1429 0/0:85,2:87:99:0,100,1764 0/1:65,10:76:99:189,0,849 +chr15 77059493 . T G 175.84 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.813;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=19.8771;MLEAC=5;MLEAF=0.833;MQ=20.45;MQ0=0;MQRankSum=-1.246;QD=4.51;ReadPosRankSum=1.246;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:10,3:14:6:52,6,0 1/1:9,5:14:9:88,9,0 0/1:6,3:10:30:76,0,30 ./. +chr15 77087596 . A T 293.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.260;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=27.9050;MLEAC=4;MLEAF=0.500;MQ=21.90;MQ0=0;MQRankSum=-0.043;QD=2.74;ReadPosRankSum=0.686;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,10:32:99:130,0,115 0/1:24,2:27:9:9,0,161 0/1:23,3:27:33:68,0,33 0/1:14,6:20:99:128,0,108 +chr15 77310726 rs76009365 T G 99.21 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.046;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=30.15;MQ0=0;MQRankSum=-0.039;QD=16.53;ReadPosRankSum=0.271;SB=0.029 GT:AD:DP:GQ:PL 0/1:1,4:6:26:135,0,26 0/0:7,0:7:9:0,9,101 0/0:6,0:6:15:0,15,193 0/0:7,0:7:18:0,18,226 +chr15 78189084 rs4243062 T C 61.39 . AC=2;AF=0.333;AN=6;BaseQRankSum=3.098;DB;DP=60;Dels=0.03;FS=6.821;HaplotypeScore=1.4595;MLEAC=2;MLEAF=0.333;MQ=9.91;MQ0=0;MQRankSum=-0.903;QD=1.86;ReadPosRankSum=0.634;SB=0.771 GT:AD:DP:GQ:PL ./. 0/1:4,8:12:18:18,0,26 0/1:6,14:20:25:81,0,25 0/0:7,11:18:6:0,6,46 +chr15 78190749 . G T 67.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.921;DP=127;Dels=0.00;FS=19.518;HaplotypeScore=7.7739;MLEAC=3;MLEAF=0.375;MQ=19.67;MQ0=0;MQRankSum=2.102;QD=0.67;ReadPosRankSum=-2.165;SB=-7.609e-01 GT:AD:DP:GQ:PL 0/0:27,0:27:21:0,21,214 0/1:22,4:26:70:80,0,70 0/1:43,2:45:7:7,0,345 0/1:26,3:29:22:22,0,116 +chr15 78196646 . C T 40.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.602;DP=80;Dels=0.01;FS=3.591;HaplotypeScore=6.5584;MLEAC=3;MLEAF=0.375;MQ=27.14;MQ0=0;MQRankSum=-0.361;QD=0.63;ReadPosRankSum=-2.238;SB=-8.716e-01 GT:AD:DP:GQ:PL 0/0:15,0:15:21:0,21,215 0/1:19,3:22:44:44,0,407 0/1:22,4:26:32:32,0,510 0/1:13,3:16:7:7,0,283 +chr15 78208723 rs11072700 A G 40 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.367;DB;DP=65;Dels=0.02;FS=2.422;HaplotypeScore=1.1647;MLEAC=1;MLEAF=0.125;MQ=26.84;MQ0=0;MQRankSum=-1.293;QD=3.08;ReadPosRankSum=-0.912;SB=-1.089e-02 GT:AD:DP:GQ:PL 0/1:8,5:13:76:76,0,167 0/0:18,0:18:33:0,33,393 0/0:15,0:16:21:0,21,290 0/0:17,0:17:36:0,36,409 +chr15 78278351 rs10775215 C T 245.44 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.323;DB;DP=30;Dels=0.00;FS=2.105;HaplotypeScore=0.6302;MLEAC=6;MLEAF=1.00;MQ=17.87;MQ0=0;MQRankSum=1.323;QD=11.69;ReadPosRankSum=1.323;SB=-4.187e+01 GT:AD:DP:GQ:PL 1/1:1,5:6:3:32,3,0 1/1:1,6:7:9:100,9,0 1/1:1,7:8:12:150,12,0 ./. +chr15 78290654 . G C 95.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.726;DP=169;Dels=0.00;FS=12.067;HaplotypeScore=1.9880;MLEAC=3;MLEAF=0.375;MQ=11.51;MQ0=0;MQRankSum=3.462;QD=0.77;ReadPosRankSum=-0.922;SB=-2.859e+01 GT:AD:DP:GQ:PL 0/1:42,1:43:25:25,0,35 0/1:41,2:43:60:62,0,60 0/0:45,0:45:3:0,3,41 0/1:36,2:38:50:50,0,104 +chr15 78461321 . T G 48.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.368;DP=172;Dels=0.01;FS=21.337;HaplotypeScore=18.7694;MLEAC=3;MLEAF=0.375;MQ=29.77;MQ0=0;MQRankSum=-4.612;QD=0.41;ReadPosRankSum=2.569;SB=-2.241e+00 GT:AD:DP:GQ:PL 0/1:35,8:43:6:6,0,748 0/0:51,4:55:72:0,72,1065 0/1:45,10:56:74:74,0,983 0/1:15,1:17:9:9,0,184 +chr15 78558509 rs2037347 G A 5120.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.412;DB;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.2500;MLEAC=8;MLEAF=1.00;MQ=38.42;MQ0=0;MQRankSum=0.497;QD=38.21;ReadPosRankSum=2.356;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,32:33:68:1271,68,0 1/1:0,37:37:99:1477,111,0 1/1:1,32:33:96:1272,96,0 1/1:3,28:31:55:1100,55,0 +chr15 78585025 . A T 222.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.163;DP=105;Dels=0.00;FS=63.609;HaplotypeScore=4.7786;MLEAC=4;MLEAF=0.500;MQ=35.41;MQ0=0;MQRankSum=-4.284;QD=2.12;ReadPosRankSum=0.461;SB=-4.685e-01 GT:AD:DP:GQ:PL 0/1:19,5:24:43:43,0,532 0/1:31,5:36:59:59,0,807 0/1:24,8:32:99:154,0,736 0/1:12,1:13:8:8,0,120 +chr15 78675486 rs144285315 AT A 312.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.262;DB;DP=67;FS=10.089;HaplotypeScore=8.2392;MLEAC=4;MLEAF=0.500;MQ=22.75;MQ0=0;MQRankSum=0.895;QD=5.57;RPA=2,1;RU=T;ReadPosRankSum=-3.235;SB=-3.912e+01;STR GT:AD:DP:GQ:PL 0/1:12,3:4:30:30,0,100 1/1:1,15:6:18:255,18,0 0/1:17,8:14:84:84,0,419 0/0:8,3:6:15:0,15,212 +chr15 78764285 rs3817092 A G 635.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.082;DB;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4522;MLEAC=3;MLEAF=0.375;MQ=31.07;MQ0=0;MQRankSum=-1.211;QD=10.78;ReadPosRankSum=-2.267;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:57:0,57,695 0/1:11,13:24:99:364,0,255 0/1:14,12:26:99:225,0,357 0/1:6,3:9:89:90,0,89 +chr15 78777312 rs9788758 G A 1726.06 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.774;DB;DP=61;Dels=0.00;FS=44.893;HaplotypeScore=0.4945;MLEAC=8;MLEAF=1.00;MQ=29.63;MQ0=0;MQRankSum=2.879;QD=28.30;ReadPosRankSum=-0.070;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,17:18:45:541,45,0 1/1:2,15:17:45:502,45,0 1/1:1,19:20:51:597,51,0 1/1:1,4:6:12:125,12,0 +chr15 78838837 rs76189127 C A 158.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.506;DB;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=0.250;MQ=36.01;MQ0=0;MQRankSum=-1.822;QD=8.35;ReadPosRankSum=0.776;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,236 0/0:16,0:16:45:0,45,610 0/1:9,5:14:99:138,0,314 0/1:3,2:5:55:62,0,55 +chr15 78923378 . G C 155.85 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.488;DP=44;Dels=0.00;FS=4.260;HaplotypeScore=3.1606;MLEAC=4;MLEAF=0.500;MQ=24.78;MQ0=0;MQRankSum=0.163;QD=3.54;ReadPosRankSum=2.115;SB=31.64 GT:AD:DP:GQ:PL 0/1:7,3:11:21:74,0,21 0/1:6,2:9:13:48,0,13 0/1:13,2:16:21:21,0,35 1/1:4,3:8:6:55,6,0 +chr15 79183263 rs75933906 T A 107.25 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.054;DB;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.6296;MLEAC=2;MLEAF=0.250;MQ=33.56;MQ0=0;MQRankSum=-0.385;QD=2.82;ReadPosRankSum=0.096;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:21:0,21,246 0/1:16,3:19:74:74,0,346 0/1:15,4:19:74:74,0,435 0/0:4,0:4:6:0,6,65 +chr15 79231478 rs12148472 T C 574.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.375;DB;DP=112;Dels=0.01;FS=2.356;HaplotypeScore=1.5683;MLEAC=3;MLEAF=0.375;MQ=33.68;MQ0=0;MQRankSum=1.250;QD=7.28;ReadPosRankSum=0.051;SB=-1.250e+02 GT:AD:DP:GQ:PL 0/0:33,0:33:96:0,96,1134 0/1:27,11:38:99:299,0,682 0/1:17,10:27:99:300,0,420 0/1:12,1:13:19:19,0,261 +chr15 79277150 . A C 47.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.051;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=6.7138;MLEAC=4;MLEAF=0.500;MQ=32.45;MQ0=0;MQRankSum=0.165;QD=1.29;ReadPosRankSum=-0.966;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,1:11:5:5,0,310 0/1:10,1:11:4:4,0,257 0/1:1,2:3:23:68,0,23 0/1:11,1:12:10:10,0,290 +chr15 79750127 rs2902954 A G 532.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.393;DB;DP=159;Dels=0.00;FS=4.828;HaplotypeScore=2.0038;MLEAC=2;MLEAF=0.250;MQ=36.07;MQ0=0;MQRankSum=0.069;QD=8.32;ReadPosRankSum=0.307;SB=-2.070e+02 GT:AD:DP:GQ:PL 0/1:21,7:28:99:189,0,671 0/1:24,12:36:99:385,0,574 0/0:47,0:47:99:0,129,1562 0/0:48,0:48:99:0,132,1668 +chr15 80472463 . C T 65.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.122;DP=34;Dels=0.03;FS=2.682;HaplotypeScore=7.6483;MLEAC=4;MLEAF=0.500;MQ=24.88;MQ0=0;MQRankSum=2.231;QD=2.74;ReadPosRankSum=0.041;SB=-2.080e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:12:0,12,116 0/1:6,1:7:21:21,0,21 1/1:3,2:5:6:68,6,0 0/1:9,1:11:22:22,0,58 +chr15 80472611 . C T 380.31 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.814;DP=41;Dels=0.00;FS=3.900;HaplotypeScore=4.1119;MLEAC=5;MLEAF=0.625;MQ=23.94;MQ0=0;MQRankSum=2.837;QD=12.27;ReadPosRankSum=3.923;SB=12.95 GT:AD:DP:GQ:PL 1/1:9,8:17:24:256,24,0 0/1:5,3:8:33:58,0,33 1/1:1,4:6:12:113,12,0 0/0:9,1:10:3:0,3,24 +chr15 80762526 rs151329281 TC T 725.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.094;DB;DP=49;FS=0.000;HaplotypeScore=13.0324;MLEAC=4;MLEAF=0.500;MQ=30.94;MQ0=0;MQRankSum=2.370;QD=14.81;RPA=5,4;RU=C;ReadPosRankSum=-1.312;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:4,11:11:12:275,0,12 0/1:4,7:8:49:169,0,49 0/1:8,6:11:99:199,0,107 0/1:5,4:6:52:134,0,52 +chr15 80806183 rs11072922 T C 1170.08 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.452;DB;DP=68;Dels=0.00;FS=6.220;HaplotypeScore=0.5825;MLEAC=4;MLEAF=0.500;MQ=38.66;MQ0=0;MQRankSum=-1.724;QD=18.57;ReadPosRankSum=1.010;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,8:21:99:231,0,461 1/1:0,18:18:54:730,54,0 0/1:16,8:24:99:257,0,508 0/0:5,0:5:12:0,12,152 +chr15 80867207 rs111510584 CA C 314.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.376;DB;DP=36;FS=0.000;HaplotypeScore=8.3492;MLEAC=3;MLEAF=0.375;MQ=30.83;MQ0=0;MQRankSum=0.612;QD=11.25;RPA=4,3;RU=A;ReadPosRankSum=0.800;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:7,6:11:99:204,0,164 0/0:7,0:7:15:0,15,192 0/1:7,2:6:61:61,0,140 0/1:3,3:6:66:102,0,66 +chr15 80883836 rs76700021 G C 51.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.065;DB;DP=84;Dels=0.02;FS=0.000;HaplotypeScore=9.4209;MLEAC=2;MLEAF=0.250;MQ=29.86;MQ0=0;MQRankSum=-0.264;QD=1.20;ReadPosRankSum=-2.395;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:39:0,39,428 0/1:13,3:16:64:64,0,263 0/0:26,1:27:30:0,30,676 0/1:22,3:25:29:29,0,537 +chr15 81224273 . G T 219.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.055;DP=190;Dels=0.02;FS=150.059;HaplotypeScore=12.3119;MLEAC=4;MLEAF=0.500;MQ=30.36;MQ0=0;MQRankSum=-3.101;QD=1.15;ReadPosRankSum=2.366;SB=-8.372e-01 GT:AD:DP:GQ:PL 0/1:33,7:41:79:79,0,783 0/1:38,8:46:74:74,0,948 0/1:49,8:57:99:102,0,1254 0/1:38,5:43:6:6,0,583 +chr15 81598691 . C A 178.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.667;DP=111;Dels=0.02;FS=20.587;HaplotypeScore=21.1173;MLEAC=3;MLEAF=0.375;MQ=21.86;MQ0=0;MQRankSum=0.829;QD=2.08;ReadPosRankSum=1.803;SB=0.069 GT:AD:DP:GQ:PL 0/1:24,4:28:76:76,0,226 0/1:25,3:28:56:56,0,230 0/0:22,3:25:6:0,6,228 0/1:21,7:28:89:89,0,137 +chr15 81624846 . A C 58.38 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.637;DP=94;Dels=0.01;FS=17.945;HaplotypeScore=2.5169;MLEAC=2;MLEAF=0.250;MQ=29.05;MQ0=0;MQRankSum=0.284;QD=1.42;ReadPosRankSum=-2.953;SB=-2.522e+00 GT:AD:DP:GQ:PL 0/1:16,3:19:50:50,0,346 0/0:21,1:22:5:0,5,410 0/0:30,0:30:63:0,63,735 0/1:19,3:22:49:49,0,323 +chr15 82530630 rs1972460 A G 217.70 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.027;DB;DP=84;Dels=0.00;FS=2.244;HaplotypeScore=0.9164;MLEAC=6;MLEAF=0.750;MQ=12.76;MQ0=0;MQRankSum=0.864;QD=2.59;ReadPosRankSum=1.262;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,18:20:12:119,12,0 0/1:15,17:32:12:69,0,12 0/1:1,16:17:19:19,0,21 1/1:4,11:15:6:55,6,0 +chr15 83238990 . A T 30.77 . AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;QD=15.39;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:62,6,0 ./. ./. ./. +chr15 83333553 . A T 35.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.871;DP=80;Dels=0.00;FS=6.228;HaplotypeScore=9.4112;MLEAC=2;MLEAF=0.250;MQ=26.93;MQ0=0;MQRankSum=-0.443;QD=0.96;ReadPosRankSum=-0.129;SB=0.341 GT:AD:DP:GQ:PL 0/0:12,0:12:15:0,15,153 0/1:17,3:20:45:45,0,251 0/0:30,1:31:33:0,33,362 0/1:12,3:17:32:32,0,97 +chr15 83350243 . G T 136.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.575;DP=110;Dels=0.02;FS=27.895;HaplotypeScore=12.3462;MLEAC=2;MLEAF=0.250;MQ=30.27;MQ0=0;MQRankSum=-1.864;QD=2.91;ReadPosRankSum=-1.475;SB=0.642 GT:AD:DP:GQ:PL 0/0:22,2:24:18:0,18,434 0/1:18,4:22:41:41,0,351 0/0:38,1:39:61:0,61,917 0/1:16,7:23:99:137,0,246 +chr15 83519927 rs74416301 G A 127.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.704;DB;DP=56;Dels=0.02;FS=6.821;HaplotypeScore=5.6154;MLEAC=3;MLEAF=0.375;MQ=29.35;MQ0=0;MQRankSum=-0.729;QD=3.12;ReadPosRankSum=-0.729;SB=-8.915e+01 GT:AD:DP:GQ:PL 0/0:15,0:15:36:0,36,487 0/1:8,5:13:97:97,0,201 0/1:12,3:15:66:66,0,192 0/1:11,1:12:7:7,0,149 +chr15 83544175 . A C 69.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.370;DP=165;Dels=0.01;FS=4.435;HaplotypeScore=10.9910;MLEAC=3;MLEAF=0.375;MQ=22.91;MQ0=0;MQRankSum=0.993;QD=0.57;ReadPosRankSum=0.696;SB=0.681 GT:AD:DP:GQ:PL 0/1:40,4:44:47:47,0,315 0/1:47,4:51:24:24,0,588 0/0:40,2:42:20:0,20,476 0/1:25,2:27:42:42,0,87 +chr15 83674356 . T A 142.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.991;DP=208;Dels=0.00;FS=5.756;HaplotypeScore=14.0619;MLEAC=4;MLEAF=0.500;MQ=23.29;MQ0=0;MQRankSum=-5.413;QD=0.69;ReadPosRankSum=3.187;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,22:54:70:70,0,393 0/1:47,18:66:4:4,0,537 0/1:46,16:62:31:31,0,799 0/1:19,7:26:79:79,0,96 +chr15 84488410 . A T 35.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.4833;MLEAC=4;MLEAF=1.00;MQ=17.46;MQ0=0;MQRankSum=1.026;QD=8.75;ReadPosRankSum=-1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:33,3,0 1/1:1,1:2:3:35,3,0 ./. +chr15 84554018 rs8028931 G C 804.46 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.254;DB;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.1500;MLEAC=8;MLEAF=1.00;MQ=33.61;MQ0=0;MQRankSum=2.254;QD=28.73;ReadPosRankSum=1.152;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,11:14:33:395,33,0 1/1:2,7:9:21:278,21,0 1/1:0,3:3:9:110,9,0 1/1:0,2:2:6:60,6,0 +chr15 84639288 . G A 37.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.854;DP=222;Dels=0.02;FS=34.091;HaplotypeScore=9.4428;MLEAC=1;MLEAF=0.125;MQ=33.45;MQ0=0;MQRankSum=-3.613;QD=0.84;ReadPosRankSum=0.818;SB=-2.767e+00 GT:AD:DP:GQ:PL 0/0:50,2:52:36:0,36,902 0/0:54,3:57:16:0,16,907 0/0:64,2:67:45:0,45,941 0/1:35,5:41:73:73,0,458 +chr15 84722521 rs1818950 A G 250.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.195;DB;DP=124;Dels=0.00;FS=4.242;HaplotypeScore=0.8996;MLEAC=2;MLEAF=0.250;MQ=21.21;MQ0=0;MQRankSum=-0.923;QD=3.53;ReadPosRankSum=0.948;SB=-1.427e+02 GT:AD:DP:GQ:PL 0/1:22,17:39:58:217,0,58 0/1:18,14:32:30:75,0,30 0/0:33,0:33:21:0,21,260 0/0:20,0:20:15:0,15,171 +chr15 85147681 . C A 50.45 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.788;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.8711;MLEAC=2;MLEAF=0.333;MQ=22.47;MQ0=0;MQRankSum=0.244;QD=4.20;ReadPosRankSum=1.461;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:4,3:7:12:69,0,12 0/1:4,1:5:19:19,0,19 0/0:4,1:5:6:0,6,84 +chr15 85196849 . G A 390.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.354;DP=135;Dels=0.00;FS=20.017;HaplotypeScore=1.4691;MLEAC=4;MLEAF=0.500;MQ=36.98;MQ0=0;MQRankSum=-5.015;QD=2.89;ReadPosRankSum=1.169;SB=-1.898e-02 GT:AD:DP:GQ:PL 0/1:32,4:36:27:27,0,691 0/1:27,7:34:99:167,0,451 0/1:30,7:37:99:160,0,490 0/1:24,4:28:79:79,0,194 +chr15 85333978 . T G 936.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.104;DP=200;Dels=0.00;FS=146.528;HaplotypeScore=9.2040;MLEAC=4;MLEAF=0.500;MQ=35.78;MQ0=0;MQRankSum=-4.496;QD=4.68;ReadPosRankSum=2.437;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:39,5:44:70:70,0,881 0/1:37,11:48:99:246,0,873 0/1:37,15:52:99:408,0,956 0/1:44,12:56:99:255,0,1013 +chr15 85399449 rs73437960 T C 58.27 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.566;DB;DP=12;Dels=0.00;FS=3.090;HaplotypeScore=1.8026;MLEAC=4;MLEAF=0.500;MQ=26.89;MQ0=0;MQRankSum=1.377;QD=6.47;ReadPosRankSum=1.106;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:30:30,0,70 0/1:1,1:2:29:36,0,29 0/0:3,0:3:3:0,3,37 1/1:1,1:2:3:34,3,0 +chr15 86205729 . A T 56.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.691;DP=131;Dels=0.03;FS=0.000;HaplotypeScore=25.1004;MLEAC=3;MLEAF=0.375;MQ=29.88;MQ0=0;MQRankSum=-2.590;QD=0.65;ReadPosRankSum=2.016;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,4:31:37:37,0,543 0/1:31,4:35:39:39,0,666 0/0:37,5:42:57:0,57,926 0/1:16,3:19:24:24,0,311 +chr15 86205730 . A T 74.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.107;DP=131;Dels=0.05;FS=0.000;HaplotypeScore=24.8610;MLEAC=3;MLEAF=0.375;MQ=30.06;MQ0=0;MQRankSum=-2.495;QD=0.84;ReadPosRankSum=2.106;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,4:30:9:9,0,505 0/1:31,5:36:59:59,0,695 0/0:36,4:40:26:0,26,847 0/1:16,3:19:49:49,0,300 +chr15 86207702 . A T 46.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.442;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4433;MLEAC=3;MLEAF=0.375;MQ=33.35;MQ0=0;MQRankSum=-1.553;QD=0.56;ReadPosRankSum=0.111;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:39,2:41:30:30,0,332 0/1:35,1:36:16:16,0,201 0/0:38,0:38:27:0,27,259 0/1:5,2:7:44:44,0,110 +chr15 86279451 . C G 80.67 . AC=6;AF=1.00;AN=6;BaseQRankSum=-0.762;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=4.5242;MLEAC=6;MLEAF=1.00;MQ=16.70;MQ0=0;MQRankSum=0.762;QD=5.04;ReadPosRankSum=0.067;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:8,2:10:3:32,3,0 1/1:1,3:4:3:30,3,0 1/1:0,2:2:6:54,6,0 +chr15 86416357 rs2344867 G A 43.32 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.380;DB;DP=7;Dels=0.00;FS=8.451;HaplotypeScore=0.9976;MLEAC=3;MLEAF=0.750;MQ=25.01;MQ0=0;MQRankSum=1.380;QD=7.22;ReadPosRankSum=0.000;SB=1.68 GT:AD:DP:GQ:PL ./. 0/1:3,1:4:18:37,0,18 ./. 1/1:1,1:2:3:41,3,0 +chr15 89002955 . A G 397.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.621;DP=125;Dels=0.01;FS=185.751;HaplotypeScore=10.6875;MLEAC=4;MLEAF=0.500;MQ=31.07;MQ0=0;MQRankSum=-4.786;QD=3.18;ReadPosRankSum=1.745;SB=1.62 GT:AD:DP:GQ:PL 0/1:18,8:26:86:86,0,545 0/1:25,7:32:96:96,0,508 0/1:28,11:39:99:239,0,703 0/1:21,6:27:19:19,0,479 +chr15 89079672 rs17197019 T C 219.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.453;DB;DP=47;Dels=0.02;FS=2.866;HaplotypeScore=2.0964;MLEAC=4;MLEAF=0.500;MQ=28.83;MQ0=0;MQRankSum=-0.816;QD=4.67;ReadPosRankSum=-1.515;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:34:34,0,241 0/1:7,5:12:61:61,0,146 0/1:9,5:14:96:96,0,140 0/1:5,2:8:54:71,0,54 +chr15 89155013 rs182325278 G A 205.99 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.291;DB;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.7098;MLEAC=4;MLEAF=0.500;MQ=31.86;MQ0=0;MQRankSum=-0.031;QD=8.24;ReadPosRankSum=0.094;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,1:3:30:30,0,70 0/1:5,3:8:62:82,0,62 0/1:2,4:6:16:126,0,16 0/1:7,1:8:10:10,0,200 +chr15 89398605 rs938608 G T 3175.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.135;DB;DP=161;Dels=0.00;FS=2.259;HaplotypeScore=1.9482;MLEAC=6;MLEAF=0.750;MQ=32.87;MQ0=0;MQRankSum=-4.108;QD=19.73;ReadPosRankSum=1.285;SB=-1.083e+03 GT:AD:DP:GQ:PL 0/1:23,16:39:99:448,0,646 0/1:29,14:43:99:345,0,877 1/1:3,43:46:94:1474,94,0 1/1:2,31:33:84:955,84,0 +chr15 89415247 rs3817428 C G 2969.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.292;DB;DP=185;Dels=0.01;FS=0.622;HaplotypeScore=1.4701;MLEAC=6;MLEAF=0.750;MQ=32.17;MQ0=0;MQRankSum=-4.657;QD=16.05;ReadPosRankSum=0.563;SB=-4.530e+02 GT:AD:DP:GQ:PL 0/1:38,15:53:99:195,0,1208 0/1:29,18:47:99:437,0,926 1/1:1,46:47:99:1414,120,0 1/1:3,34:37:49:970,49,0 +chr15 89659467 rs293395 C G 292.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.627;DB;DP=41;Dels=0.00;FS=5.911;HaplotypeScore=0.4916;MLEAC=4;MLEAF=0.500;MQ=31.38;MQ0=0;MQRankSum=1.592;QD=11.68;ReadPosRankSum=-0.499;SB=-3.962e+01 GT:AD:DP:GQ:PL 0/0:16,0:16:39:0,39,438 1/1:0,5:5:15:193,15,0 0/1:11,4:15:99:123,0,251 0/1:4,1:5:24:24,0,55 +chr15 89862189 . G A 209.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.964;DP=100;Dels=0.00;FS=34.616;HaplotypeScore=5.8577;MLEAC=4;MLEAF=0.500;MQ=27.91;MQ0=0;MQRankSum=-2.364;QD=2.09;ReadPosRankSum=0.898;SB=-3.873e-01 GT:AD:DP:GQ:PL 0/1:20,8:30:99:137,0,263 0/1:15,3:18:9:9,0,131 0/1:22,4:26:41:41,0,416 0/1:21,4:26:64:64,0,180 +chr15 89865976 . A T 152.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.607;DP=203;Dels=0.00;FS=100.828;HaplotypeScore=16.9866;MLEAC=3;MLEAF=0.375;MQ=30.76;MQ0=0;MQRankSum=-3.123;QD=0.99;ReadPosRankSum=3.140;SB=0.797 GT:AD:DP:GQ:PL 0/1:47,9:56:94:94,0,1182 0/0:45,3:48:47:0,47,1101 0/1:51,7:58:86:86,0,1148 0/1:36,5:41:16:16,0,705 +chr15 89867400 . G T 112.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.216;DP=87;Dels=0.01;FS=46.565;HaplotypeScore=15.2736;MLEAC=4;MLEAF=0.500;MQ=23.09;MQ0=0;MQRankSum=-0.449;QD=1.30;ReadPosRankSum=-1.119;SB=-2.718e-01 GT:AD:DP:GQ:PL 0/1:16,4:20:70:70,0,229 0/1:18,5:23:10:10,0,166 0/1:22,4:26:43:43,0,349 0/1:14,3:17:32:32,0,131 +chr15 90144894 rs4932234 T C 1082.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.107;DB;DP=193;Dels=0.00;FS=1.613;HaplotypeScore=1.6457;MLEAC=2;MLEAF=0.250;MQ=35.56;MQ0=0;MQRankSum=-4.339;QD=10.12;ReadPosRankSum=1.506;SB=-3.600e+02 GT:AD:DP:GQ:PL 0/1:27,24:51:99:672,0,779 0/1:39,17:56:99:452,0,1164 0/0:61,0:61:99:0,171,2175 0/0:25,0:25:66:0,66,839 +chr15 90144944 rs4244876 G A 1286.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.361;DB;DP=178;Dels=0.00;FS=7.707;HaplotypeScore=1.2430;MLEAC=2;MLEAF=0.250;MQ=38.80;MQ0=0;MQRankSum=-0.211;QD=13.00;ReadPosRankSum=1.267;SB=-2.440e+02 GT:AD:DP:GQ:PL 0/1:28,24:52:99:821,0,718 0/1:31,16:47:99:507,0,1107 0/0:65,0:65:99:0,190,2488 0/0:14,0:14:39:0,39,536 +chr15 90192905 rs4932240 T C 446.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.567;DB;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.1283;MLEAC=2;MLEAF=0.250;MQ=37.25;MQ0=0;MQRankSum=-1.631;QD=14.89;ReadPosRankSum=-0.984;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,7:15:99:211,0,241 0/1:7,8:15:99:277,0,209 0/0:25,0:25:66:0,66,922 0/0:30,0:30:81:0,81,1053 +chr15 90252251 . T C 34.28 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.632;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.2892;MLEAC=3;MLEAF=0.375;MQ=27.69;MQ0=0;MQRankSum=-0.457;QD=2.64;ReadPosRankSum=-0.196;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:24:24,0,89 1/1:3,1:4:3:32,3,0 0/0:4,1:5:12:0,12,118 0/1:3,1:4:22:22,0,62 +chr15 90258144 rs17238390 C G 261.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.796;DB;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.2495;MLEAC=1;MLEAF=0.125;MQ=38.39;MQ0=0;MQRankSum=-2.307;QD=9.03;ReadPosRankSum=0.514;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,10:29:99:298,0,615 0/0:34,0:34:99:0,102,1370 0/0:35,0:35:99:0,105,1404 0/0:28,0:28:81:0,81,1072 +chr15 90335788 rs25651 C T 1011.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.610;DB;DP=98;Dels=0.00;FS=3.797;HaplotypeScore=0.9547;MLEAC=4;MLEAF=0.500;MQ=34.87;MQ0=0;MQRankSum=-1.713;QD=15.33;ReadPosRankSum=1.461;SB=-3.403e+01 GT:AD:DP:GQ:PL 0/0:32,0:32:81:0,81,1048 1/1:1,23:24:69:849,69,0 0/1:14,7:21:99:191,0,465 0/1:19,2:21:20:20,0,497 +chr15 90340979 . T C 36.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.794;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.8727;MLEAC=3;MLEAF=0.375;MQ=36.27;MQ0=0;MQRankSum=-3.778;QD=0.36;ReadPosRankSum=-0.459;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,2:31:5:5,0,557 0/1:35,3:38:14:14,0,829 0/0:34,1:35:56:0,56,1045 0/1:29,4:33:59:59,0,635 +chr15 90453878 . A T 346.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.426;DP=54;Dels=0.00;FS=3.075;HaplotypeScore=3.0123;MLEAC=4;MLEAF=0.500;MQ=23.08;MQ0=0;MQRankSum=2.699;QD=6.42;ReadPosRankSum=1.803;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,8:17:41:176,0,41 0/1:10,2:12:18:18,0,55 0/1:6,8:14:26:135,0,26 0/1:9,2:11:14:60,0,14 +chr15 90623033 . A T 33.97 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.124;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=5.4400;MLEAC=2;MLEAF=0.250;MQ=33.15;MQ0=0;MQRankSum=-2.572;QD=0.74;ReadPosRankSum=-1.494;SB=-2.797e+00 GT:AD:DP:GQ:PL 0/1:20,2:22:3:3,0,511 0/0:21,1:24:20:0,20,540 0/0:28,0:28:75:0,75,859 0/1:19,4:23:68:68,0,451 +chr15 90784845 . C G 109.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.203;DP=62;Dels=0.00;FS=20.936;HaplotypeScore=4.6621;MLEAC=4;MLEAF=0.500;MQ=31.31;MQ0=0;MQRankSum=-1.848;QD=1.77;ReadPosRankSum=2.047;SB=-1.589e+00 GT:AD:DP:GQ:PL 0/1:19,3:23:12:12,0,399 0/1:13,1:14:2:2,0,185 0/1:14,3:17:66:66,0,209 0/1:5,3:8:70:70,0,157 +chr15 90794102 rs4932171 G A 1305.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.831;DB;DP=233;Dels=0.01;FS=12.254;HaplotypeScore=2.2265;MLEAC=3;MLEAF=0.375;MQ=34.77;MQ0=0;MQRankSum=-6.324;QD=8.21;ReadPosRankSum=2.320;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:27,24:51:99:633,0,939 0/0:74,0:74:99:0,220,2801 0/1:32,20:52:99:466,0,1014 0/1:41,13:54:99:250,0,1268 +chr15 90818827 rs4595780 G A 90.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.996;DB;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1220;MLEAC=3;MLEAF=0.375;MQ=26.30;MQ0=0;MQRankSum=-3.680;QD=1.23;ReadPosRankSum=0.074;SB=-1.213e-02 GT:AD:DP:GQ:PL 0/1:14,9:23:42:42,0,215 0/0:28,0:28:51:0,51,598 0/1:14,13:27:48:48,0,376 0/1:17,7:24:44:44,0,297 +chr15 91448909 . A C 303.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.044;DP=93;Dels=0.01;FS=57.603;HaplotypeScore=12.6276;MLEAC=4;MLEAF=0.500;MQ=25.84;MQ0=0;MQRankSum=3.069;QD=3.26;ReadPosRankSum=-0.731;SB=-1.317e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:34:34,0,241 0/1:19,4:23:99:101,0,177 0/1:22,3:26:64:64,0,276 0/1:20,6:26:99:147,0,357 +chr15 91490931 . G C 98.14 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.054;DP=18;Dels=0.00;FS=4.771;HaplotypeScore=1.9584;MLEAC=6;MLEAF=1.00;MQ=18.12;MQ0=0;MQRankSum=2.054;QD=6.54;ReadPosRankSum=1.001;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,2:5:6:49,6,0 1/1:4,1:5:3:32,3,0 ./. 1/1:2,3:5:6:53,6,0 +chr15 91519952 . A C 51.15 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.277;DP=130;Dels=0.00;FS=36.030;HaplotypeScore=1.8808;MLEAC=2;MLEAF=0.250;MQ=32.24;MQ0=0;MQRankSum=0.024;QD=0.95;ReadPosRankSum=-1.951;SB=-6.546e+00 GT:AD:DP:GQ:PL 0/0:26,2:28:0:0,0,462 0/1:32,6:38:83:83,0,718 0/0:45,3:48:11:0,11,954 0/1:15,1:16:4:4,0,254 +chr15 91523480 . A C 345.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.735;DP=146;Dels=0.00;FS=11.858;HaplotypeScore=4.2887;MLEAC=4;MLEAF=0.500;MQ=34.13;MQ0=0;MQRankSum=-2.067;QD=2.37;ReadPosRankSum=1.816;SB=-3.958e-02 GT:AD:DP:GQ:PL 0/1:29,8:38:99:187,0,551 0/1:31,2:35:30:30,0,388 0/1:34,8:42:99:150,0,698 0/1:28,3:31:21:21,0,427 +chr15 91523713 rs1867226 C G 315.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.049;DB;DP=75;Dels=0.00;FS=2.426;HaplotypeScore=0.4470;MLEAC=4;MLEAF=0.500;MQ=29.50;MQ0=0;MQRankSum=-1.233;QD=7.01;ReadPosRankSum=1.697;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:30,0:30:78:0,78,945 1/1:2,11:13:30:295,30,0 0/1:20,2:22:29:29,0,479 0/1:8,2:10:40:40,0,106 +chr15 91575297 rs11629955 T C 342.62 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.402;DB;DP=48;Dels=0.00;FS=1.424;HaplotypeScore=0.4728;MLEAC=5;MLEAF=0.625;MQ=18.40;MQ0=0;MQRankSum=1.357;QD=9.79;ReadPosRankSum=2.803;SB=-5.910e+01 GT:AD:DP:GQ:PL 0/1:6,4:10:17:31,0,17 0/0:8,5:13:6:0,6,54 1/1:0,11:11:15:162,15,0 1/1:1,13:14:18:198,18,0 +chr15 93542000 rs7173849 C G 555.34 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.977;DB;DP=22;Dels=0.00;FS=10.212;HaplotypeScore=0.2367;MLEAC=8;MLEAF=1.00;MQ=31.25;MQ0=0;MQRankSum=2.216;QD=25.24;ReadPosRankSum=0.419;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,5:5:12:154,12,0 1/1:1,5:6:15:179,15,0 1/1:0,4:4:12:144,12,0 1/1:2,5:7:9:117,9,0 +chr15 93595633 . A C 50.34 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.885;DP=51;Dels=0.00;FS=50.461;HaplotypeScore=1.6360;MLEAC=3;MLEAF=0.375;MQ=30.47;MQ0=0;MQRankSum=-3.044;QD=1.32;ReadPosRankSum=1.176;SB=-9.115e-01 GT:AD:DP:GQ:PL 0/1:9,4:13:48:48,0,171 0/0:12,1:13:15:0,15,409 0/1:15,3:18:12:12,0,442 0/1:5,2:7:33:33,0,85 +chr15 96985546 . G C 50.36 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.668;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.6631;MLEAC=1;MLEAF=0.125;MQ=27.95;MQ0=0;MQRankSum=0.080;QD=3.15;ReadPosRankSum=-0.508;SB=0.342 GT:AD:DP:GQ:PL 0/0:7,0:7:6:0,6,80 0/0:10,0:10:15:0,15,179 0/0:15,0:15:18:0,18,205 0/1:12,4:16:86:86,0,142 +chr15 98811241 rs4997560 T C 71.68 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.696;DB;DP=21;Dels=0.05;FS=9.890;HaplotypeScore=0.7629;MLEAC=5;MLEAF=0.625;MQ=21.55;MQ0=0;MQRankSum=0.533;QD=3.41;ReadPosRankSum=0.000;SB=-2.939e+01 GT:AD:DP:GQ:PL 0/1:2,1:3:16:25,0,16 1/1:1,1:2:3:31,3,0 0/1:5,2:7:34:34,0,38 0/1:6,1:8:24:24,0,74 +chr15 99511873 rs2715423 G A 1907.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.168;DB;DP=185;Dels=0.00;FS=6.925;HaplotypeScore=11.8553;MLEAC=3;MLEAF=0.375;MQ=32.98;MQ0=0;MQRankSum=-2.907;QD=13.07;ReadPosRankSum=1.507;SB=-9.040e+02 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,99,1297 0/1:21,20:41:99:607,0,428 0/1:37,26:63:99:764,0,1052 0/1:20,22:42:99:580,0,454 +chr15 99696410 . C T 30.10 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.993;DP=187;Dels=0.00;FS=59.437;HaplotypeScore=0.9616;MLEAC=1;MLEAF=0.125;MQ=34.43;MQ0=0;MQRankSum=1.770;QD=0.65;ReadPosRankSum=0.794;SB=-6.521e+00 GT:AD:DP:GQ:PL 0/1:41,5:46:66:66,0,974 0/0:40,2:42:22:0,22,864 0/0:46,4:50:11:0,11,1164 0/0:46,3:49:26:0,26,1155 +chr15 100252738 . A G 44.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.989;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=5.4769;MLEAC=4;MLEAF=0.500;MQ=21.06;MQ0=0;MQRankSum=1.827;QD=0.56;ReadPosRankSum=-0.703;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:55:55,0,223 0/1:20,3:23:5:5,0,180 0/1:15,1:16:9:9,0,120 0/1:18,1:19:16:16,0,120 +chr15 100821568 . A C 109.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.601;DP=55;Dels=0.00;FS=4.889;HaplotypeScore=1.2898;MLEAC=2;MLEAF=0.250;MQ=26.03;MQ0=0;MQRankSum=-0.093;QD=3.91;ReadPosRankSum=-1.522;SB=0.011 GT:AD:DP:GQ:PL 0/0:12,0:12:21:0,21,221 0/0:15,0:15:24:0,24,259 0/1:13,4:17:62:62,0,227 0/1:7,4:11:89:89,0,123 +chr15 101109818 rs12460 G A 309.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.195;DB;DP=158;Dels=0.01;FS=21.056;HaplotypeScore=14.0355;MLEAC=1;MLEAF=0.125;MQ=34.86;MQ0=0;MQRankSum=-1.296;QD=7.95;ReadPosRankSum=0.187;SB=-9.789e+01 GT:AD:DP:GQ:PL 0/1:26,13:39:99:346,0,738 0/0:40,0:40:93:0,93,1174 0/0:40,0:40:96:0,96,1269 0/0:37,0:37:84:0,84,1081 +chr15 101432883 . T A 524.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.480;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=10.3340;MLEAC=4;MLEAF=0.500;MQ=31.25;MQ0=0;MQRankSum=-4.003;QD=4.56;ReadPosRankSum=5.665;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,9:32:99:242,0,464 0/1:16,9:25:99:187,0,138 0/1:26,6:32:82:82,0,458 0/1:20,5:25:56:56,0,263 +chr15 101569467 rs11639307 T C 1376.90 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.138;DB;DP=51;Dels=0.00;FS=17.730;HaplotypeScore=1.0749;MLEAC=8;MLEAF=1.00;MQ=29.60;MQ0=0;MQRankSum=2.826;QD=27.00;ReadPosRankSum=0.253;SB=-4.201e+01 GT:AD:DP:GQ:PL 1/1:2,16:18:48:593,48,0 1/1:5,9:14:27:336,27,0 1/1:0,7:7:18:212,18,0 1/1:2,10:12:1:274,1,0 +chr15 101606570 rs2925202 T C 124.27 . AC=5;AF=0.833;AN=6;BaseQRankSum=2.219;DB;DP=12;Dels=0.00;FS=6.264;HaplotypeScore=1.7842;MLEAC=5;MLEAF=0.833;MQ=28.34;MQ0=0;MQRankSum=1.307;QD=12.43;ReadPosRankSum=-0.729;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,1:4:38:38,0,38 1/1:1,2:3:6:83,6,0 ./. 1/1:2,1:3:3:42,3,0 +chr15 101609098 . G T 32.46 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.762;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5213;MLEAC=1;MLEAF=0.125;MQ=30.65;MQ0=0;MQRankSum=-0.067;QD=5.41;ReadPosRankSum=0.762;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:35:67,0,35 0/0:6,0:6:9:0,9,117 0/0:1,0:1:3:0,3,33 0/0:2,0:2:3:0,3,32 +chr15 101972366 . T A 54.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.945;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.1895;MLEAC=4;MLEAF=0.500;MQ=32.99;MQ0=0;MQRankSum=-3.313;QD=0.35;ReadPosRankSum=1.062;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,4:40:40:40,0,867 0/1:38,5:43:30:30,0,902 0/1:35,3:40:5:5,0,866 0/1:27,4:32:21:21,0,735 +chr15 102303362 rs71416238 A C 836.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.789;DB;DP=386;Dels=0.00;FS=21.782;HaplotypeScore=5.3490;MLEAC=4;MLEAF=0.500;MQ=13.23;MQ0=0;MQRankSum=-0.701;QD=2.17;ReadPosRankSum=0.783;SB=-2.840e+02 GT:AD:DP:GQ:PL 0/1:54,59:113:99:248,0,151 0/1:66,31:97:99:204,0,133 0/1:46,42:88:87:106,0,87 0/1:52,35:88:86:321,0,86 +chr15 102304584 . A C 97.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.520;DP=341;Dels=0.00;FS=104.849;HaplotypeScore=7.0890;MLEAC=3;MLEAF=0.375;MQ=10.06;MQ0=0;MQRankSum=1.018;QD=0.39;ReadPosRankSum=-0.296;SB=0.888 GT:AD:DP:GQ:PL 0/0:91,4:95:12:0,12,282 0/1:71,6:77:39:39,0,104 0/1:77,8:85:29:29,0,153 0/1:72,12:84:72:72,0,132 +chr15 102369183 rs8037368 A G 94.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=7.830;DB;DP=275;Dels=0.00;FS=83.818;HaplotypeScore=10.2495;MLEAC=2;MLEAF=0.250;MQ=20.71;MQ0=0;MQRankSum=-10.297;QD=0.67;ReadPosRankSum=2.851;SB=-3.793e+00 GT:AD:DP:GQ:PL 0/0:40,33:73:41:0,41,842 0/1:20,45:65:88:88,0,361 0/1:47,29:76:48:48,0,807 0/0:48,12:60:38:0,38,834 +chr16 67513 . G T 30.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.785;DP=122;Dels=0.00;FS=12.265;HaplotypeScore=1.6995;MLEAC=2;MLEAF=0.250;MQ=11.00;MQ0=0;MQRankSum=1.822;QD=0.58;ReadPosRankSum=-1.138;SB=-2.016e+00 GT:AD:DP:GQ:PL 0/1:23,2:25:31:47,0,31 1/1:25,2:27:3:26,3,0 0/0:35,1:36:12:0,12,115 0/0:34,0:34:18:0,18,172 +chr16 240122 . C T 64.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.039;DP=43;Dels=0.00;FS=26.327;HaplotypeScore=4.1521;MLEAC=4;MLEAF=0.500;MQ=31.61;MQ0=0;MQRankSum=-0.799;QD=1.50;ReadPosRankSum=-0.799;SB=-8.111e-01 GT:AD:DP:GQ:PL 0/1:11,2:13:28:28,0,239 0/1:9,1:10:14:14,0,182 0/1:9,1:11:7:7,0,177 0/1:5,3:9:57:57,0,87 +chr16 321055 . T G 40.27 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.661;DP=45;Dels=0.04;FS=0.000;HaplotypeScore=4.9954;MLEAC=3;MLEAF=0.375;MQ=25.89;MQ0=0;MQRankSum=0.420;QD=1.09;ReadPosRankSum=0.821;SB=-1.530e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:15:0,15,180 0/1:9,3:12:40:40,0,59 0/1:15,2:17:30:30,0,246 0/1:5,1:6:13:13,0,80 +chr16 336363 . T G 43.62 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.346;DP=41;Dels=0.05;FS=6.226;HaplotypeScore=10.4841;MLEAC=3;MLEAF=0.500;MQ=20.32;MQ0=0;MQRankSum=-0.598;QD=1.41;ReadPosRankSum=1.354;SB=-1.211e-01 GT:AD:DP:GQ:PL 0/1:5,3:8:15:15,0,60 0/1:8,3:12:54:54,0,61 0/1:7,3:10:13:13,0,95 ./. +chr16 396707 . T C 214.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.940;DP=102;Dels=0.00;FS=28.122;HaplotypeScore=1.2178;MLEAC=3;MLEAF=0.375;MQ=31.94;MQ0=0;MQRankSum=-2.180;QD=2.93;ReadPosRankSum=0.847;SB=2.36 GT:AD:DP:GQ:PL 0/1:27,5:32:99:103,0,588 0/1:14,5:19:75:75,0,287 0/0:28,1:29:13:0,13,378 0/1:17,5:22:79:79,0,227 +chr16 419304 . C T 243.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.672;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0276;MLEAC=4;MLEAF=0.500;MQ=22.91;MQ0=0;MQRankSum=3.755;QD=4.68;ReadPosRankSum=-2.042;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:13:84:84,0,102 0/1:7,3:10:40:40,0,65 0/1:16,4:20:98:98,0,174 0/1:7,2:9:19:64,0,19 +chr16 422544 . A AG 531.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.887;DP=117;FS=22.876;HaplotypeScore=44.1319;MLEAC=3;MLEAF=0.375;MQ=30.36;MQ0=0;MQRankSum=-1.777;QD=6.18;RPA=1,2;RU=G;ReadPosRankSum=1.427;SB=-2.498e+02;STR GT:AD:DP:GQ:PL 0/0:30,0:30:87:0,87,1205 0/1:17,3:20:81:81,0,445 0/1:23,10:27:99:273,0,504 0/1:23,8:23:99:230,0,471 +chr16 449659 rs14293 G A 343.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.998;DB;DP=177;Dels=0.01;FS=1.114;HaplotypeScore=9.6084;MLEAC=1;MLEAF=0.125;MQ=34.61;MQ0=0;MQRankSum=-0.361;QD=8.82;ReadPosRankSum=1.407;SB=-1.770e+02 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,108,1328 0/1:25,13:38:99:380,0,492 0/0:59,0:59:99:0,168,2076 0/0:41,0:41:99:0,108,1229 +chr16 450460 . C T 36.27 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.661;DP=32;Dels=0.03;FS=5.969;HaplotypeScore=0.7442;MLEAC=4;MLEAF=0.500;MQ=18.63;MQ0=0;MQRankSum=-0.283;QD=1.34;ReadPosRankSum=1.732;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:5:6:0,6,79 1/1:5,1:6:3:31,3,0 0/1:7,4:11:26:26,0,47 0/1:5,4:9:22:22,0,26 +chr16 570673 . G A 1317.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.195;DP=130;Dels=0.00;FS=2.456;HaplotypeScore=8.5665;MLEAC=3;MLEAF=0.375;MQ=33.15;MQ0=0;MQRankSum=-1.149;QD=13.73;ReadPosRankSum=0.197;SB=-5.550e+02 GT:AD:DP:GQ:PL 0/0:34,0:34:78:0,78,969 0/1:15,20:35:99:599,0,344 0/1:16,7:23:99:197,0,524 0/1:19,19:38:99:565,0,355 +chr16 718538 . G C 38.13 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.196;DP=31;Dels=0.03;FS=17.179;HaplotypeScore=1.1961;MLEAC=1;MLEAF=0.125;MQ=30.77;MQ0=0;MQRankSum=-0.501;QD=5.45;ReadPosRankSum=-1.042;SB=5.87 GT:AD:DP:GQ:PL 0/0:6,0:6:15:0,15,180 0/0:8,0:8:12:0,12,131 0/0:9,0:9:18:0,18,232 0/1:4,3:7:74:74,0,103 +chr16 766936 . C T 32.66 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.945;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=5.5213;MLEAC=1;MLEAF=0.125;MQ=19.74;MQ0=0;MQRankSum=0.105;QD=3.63;ReadPosRankSum=0.035;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:40:67,0,40 0/0:10,0:10:6:0,6,50 0/0:6,3:9:3:0,3,27 0/0:6,0:6:3:0,3,33 +chr16 845249 . C G 40.31 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.425;DP=27;Dels=0.00;FS=15.849;HaplotypeScore=5.0153;MLEAC=3;MLEAF=0.375;MQ=28.21;MQ0=0;MQRankSum=-0.898;QD=1.75;ReadPosRankSum=1.559;SB=-2.328e+00 GT:AD:DP:GQ:PL 0/0:4,0:4:3:0,3,36 0/1:7,1:8:12:12,0,99 0/1:7,2:9:53:53,0,59 0/1:5,1:6:16:16,0,86 +chr16 904773 . C A 105.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.032;DP=28;Dels=0.04;FS=2.793;HaplotypeScore=1.8191;MLEAC=4;MLEAF=0.500;MQ=22.20;MQ0=0;MQRankSum=0.420;QD=4.38;ReadPosRankSum=1.840;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:9:0,9,98 0/1:7,2:9:48:49,0,48 0/1:5,2:7:45:45,0,70 1/1:3,4:7:6:56,6,0 +chr16 961054 rs2277892 C T 1387.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.936;DB;DP=137;Dels=0.00;FS=19.117;HaplotypeScore=8.0166;MLEAC=4;MLEAF=0.500;MQ=33.24;MQ0=0;MQRankSum=-1.911;QD=14.45;ReadPosRankSum=0.413;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:8,22:30:66:834,66,0 0/0:41,0:41:99:0,105,1290 0/1:24,9:33:99:245,0,573 0/1:20,13:33:99:357,0,567 +chr16 1004743 rs3751665 C T 1553.76 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.199;DB;DP=63;Dels=0.00;FS=4.195;HaplotypeScore=0.9867;MLEAC=7;MLEAF=0.875;MQ=29.75;MQ0=0;MQRankSum=0.300;QD=24.66;ReadPosRankSum=0.899;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:1,10:11:0:297,0,0 0/1:7,10:18:99:253,0,187 1/1:0,16:16:42:499,42,0 1/1:1,17:18:51:547,51,0 +chr16 1129912 rs642249 A G 58.31 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.949;DB;DP=20;Dels=0.05;FS=2.796;HaplotypeScore=3.7976;MLEAC=7;MLEAF=0.875;MQ=18.82;MQ0=0;MQRankSum=0.650;QD=3.64;ReadPosRankSum=0.650;SB=-4.206e+01 GT:AD:DP:GQ:PL 1/1:1,2:3:6:51,6,0 1/1:3,5:8:3:24,3,0 1/1:0,5:5:3:25,3,0 0/0:3,0:3:3:0,3,28 +chr16 1275135 rs9938123 T C 393.93 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.953;DB;DP=16;Dels=0.00;FS=8.751;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=28.22;MQ0=0;MQRankSum=2.123;QD=24.62;ReadPosRankSum=-0.934;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:12:146,12,0 1/1:0,1:2:3:38,3,0 1/1:1,5:6:12:147,12,0 1/1:0,3:3:9:101,9,0 +chr16 1370309 rs909917 C G 2897.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.549;DB;DP=124;Dels=0.00;FS=6.523;HaplotypeScore=7.4124;MLEAC=8;MLEAF=1.00;MQ=25.57;MQ0=0;MQRankSum=0.779;QD=23.37;ReadPosRankSum=2.815;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:3,31:34:59:864,59,0 1/1:0,25:26:66:688,66,0 1/1:2,32:34:57:851,57,0 1/1:7,23:30:51:534,51,0 +chr16 1374645 . C A 32.43 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.023;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=0.4991;MLEAC=2;MLEAF=0.250;MQ=26.58;MQ0=0;MQRankSum=-0.849;QD=0.81;ReadPosRankSum=-2.567;SB=0.110 GT:AD:DP:GQ:PL 0/1:13,1:14:3:3,0,158 0/0:16,1:17:7:0,7,252 0/1:21,5:26:66:66,0,353 0/0:15,2:17:12:0,12,319 +chr16 1374818 rs8063 A G 3786.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.823;DB;DP=102;Dels=0.00;FS=29.165;HaplotypeScore=0.7409;MLEAC=8;MLEAF=1.00;MQ=39.51;MQ0=0;MQRankSum=1.381;QD=37.12;ReadPosRankSum=0.748;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,19:21:57:773,57,0 1/1:1,28:29:59:1120,59,0 1/1:2,23:25:41:888,41,0 1/1:1,26:27:75:1005,75,0 +chr16 1392257 . C T 38.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.509;DP=75;Dels=0.00;FS=7.690;HaplotypeScore=4.4933;MLEAC=3;MLEAF=0.375;MQ=30.32;MQ0=0;MQRankSum=-1.335;QD=0.66;ReadPosRankSum=0.124;SB=-3.574e+00 GT:AD:DP:GQ:PL 0/1:17,1:18:1:1,0,267 0/0:16,1:17:1:0,1,190 0/1:19,2:22:40:40,0,177 0/1:16,2:18:35:35,0,202 +chr16 1444278 . G T 110.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.625;DP=50;Dels=0.00;FS=5.263;HaplotypeScore=2.1817;MLEAC=2;MLEAF=0.250;MQ=31.18;MQ0=0;MQRankSum=-1.425;QD=4.82;ReadPosRankSum=0.325;SB=0.823 GT:AD:DP:GQ:PL 0/1:9,2:11:49:49,0,160 0/0:16,0:16:18:0,18,231 0/0:11,0:11:12:0,12,132 0/1:8,4:12:99:103,0,165 +chr16 1445852 . A T 210.99 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.611;DP=80;Dels=0.00;FS=7.409;HaplotypeScore=2.4551;MLEAC=4;MLEAF=0.500;MQ=30.94;MQ0=0;MQRankSum=-2.172;QD=2.64;ReadPosRankSum=-1.098;SB=-2.274e-01 GT:AD:DP:GQ:PL 0/1:18,2:20:10:10,0,431 0/1:16,4:21:79:79,0,366 0/1:16,2:19:18:18,0,371 0/1:12,7:20:99:146,0,241 +chr16 1449451 . A G 32.38 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.606;DP=19;Dels=0.00;FS=15.611;HaplotypeScore=0.9956;MLEAC=4;MLEAF=0.667;MQ=29.95;MQ0=0;MQRankSum=-0.423;QD=2.02;ReadPosRankSum=-0.254;SB=3.87 GT:AD:DP:GQ:PL 0/1:4,1:5:16:16,0,28 ./. 0/1:4,1:5:32:32,0,56 1/1:4,1:6:3:23,3,0 +chr16 1486926 rs3751895 C G 122.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.365;DB;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=1.2310;MLEAC=2;MLEAF=0.250;MQ=30.31;MQ0=0;MQRankSum=-0.274;QD=7.21;ReadPosRankSum=-0.319;SB=-1.276e-02 GT:AD:DP:GQ:PL 0/1:4,4:8:90:125,0,90 0/1:5,3:8:39:39,0,126 0/0:9,0:9:24:0,24,304 0/0:9,0:9:15:0,15,138 +chr16 1498520 rs12597739 A G 230.29 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.344;DB;DP=31;Dels=0.00;FS=2.703;HaplotypeScore=0.8308;MLEAC=5;MLEAF=0.625;MQ=32.66;MQ0=0;MQRankSum=-1.463;QD=7.43;ReadPosRankSum=0.430;SB=-6.936e+01 GT:AD:DP:GQ:PL 0/1:9,1:10:3:3,0,296 0/1:9,1:10:8:8,0,238 0/1:2,5:7:11:156,0,11 1/1:0,4:4:9:106,9,0 +chr16 1536330 . C G 33.67 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.061;DP=27;Dels=0.00;FS=4.801;HaplotypeScore=12.0426;MLEAC=4;MLEAF=0.667;MQ=16.74;MQ0=0;MQRankSum=1.041;QD=2.40;ReadPosRankSum=0.306;SB=-1.937e+01 GT:AD:DP:GQ:PL 1/1:1,1:2:3:27,3,0 ./. 0/0:6,0:6:6:0,6,60 1/1:8,4:12:6:47,6,0 +chr16 1552551 . T C 44.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.225;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.2492;MLEAC=4;MLEAF=0.500;MQ=25.29;MQ0=0;MQRankSum=-0.475;QD=1.09;ReadPosRankSum=0.225;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:21:21,0,118 0/1:10,2:12:31:31,0,196 0/1:7,1:8:15:15,0,115 0/1:7,2:9:20:20,0,73 +chr16 1552769 . T A 225.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.015;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.2411;MLEAC=4;MLEAF=0.500;MQ=28.73;MQ0=0;MQRankSum=1.183;QD=2.86;ReadPosRankSum=0.161;SB=-1.299e-02 GT:AD:DP:GQ:PL 0/1:11,5:16:99:129,0,143 0/1:18,4:22:94:94,0,164 0/1:23,3:26:32:32,0,451 0/1:13,2:15:13:13,0,99 +chr16 1706321 . A T 79.20 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.456;DP=57;Dels=0.00;FS=7.601;HaplotypeScore=0.6340;MLEAC=4;MLEAF=0.500;MQ=35.48;MQ0=0;MQRankSum=-0.670;QD=1.39;ReadPosRankSum=-1.983;SB=-2.148e+00 GT:AD:DP:GQ:PL 0/1:12,1:13:8:8,0,342 0/1:11,4:15:99:99,0,243 0/1:15,1:16:8:8,0,319 0/1:12,1:13:4:4,0,356 +chr16 1706435 rs61739874 C T 401.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.324;DB;DP=43;Dels=0.00;FS=1.481;HaplotypeScore=1.3333;MLEAC=4;MLEAF=0.500;MQ=30.18;MQ0=0;MQRankSum=1.544;QD=9.34;ReadPosRankSum=-0.361;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:10,3:13:66:79,0,66 0/1:9,5:14:99:130,0,270 0/1:5,3:8:64:111,0,64 0/1:4,4:8:96:124,0,96 +chr16 1816393 . T G 38.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.554;DP=42;Dels=0.02;FS=8.184;HaplotypeScore=3.0835;MLEAC=3;MLEAF=0.375;MQ=21.17;MQ0=0;MQRankSum=0.372;QD=1.41;ReadPosRankSum=0.197;SB=0.434 GT:AD:DP:GQ:PL 0/1:5,1:6:25:25,0,82 0/0:13,1:14:15:0,15,135 0/1:9,3:12:36:36,0,46 0/1:8,1:9:20:20,0,45 +chr16 1817736 . G T 32.31 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.687;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7258;MLEAC=2;MLEAF=0.250;MQ=27.94;MQ0=0;MQRankSum=1.660;QD=1.47;ReadPosRankSum=-0.916;SB=-1.843e-01 GT:AD:DP:GQ:PL 0/1:10,1:11:13:13,0,164 0/0:9,0:9:18:0,18,197 0/0:10,0:10:24:0,24,246 0/1:8,2:11:60:60,0,81 +chr16 1837900 rs344358 T C 206.02 . AC=6;AF=1.00;AN=6;DB;DP=16;Dels=0.00;FS=4.150;HaplotypeScore=0.9770;MLEAC=6;MLEAF=1.00;MQ=19.69;MQ0=0;QD=18.73;SB=-5.845e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:114,12,0 1/1:0,3:3:9:84,9,0 1/1:1,3:4:6:45,6,0 ./. +chr16 1872290 rs185928647 G A 36.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.518;DB;DP=41;Dels=0.02;FS=5.654;HaplotypeScore=4.1730;MLEAC=2;MLEAF=0.250;MQ=22.29;MQ0=0;MQRankSum=-1.386;QD=1.38;ReadPosRankSum=2.486;SB=0.262 GT:AD:DP:GQ:PL 0/0:5,0:5:15:0,15,171 0/1:5,4:9:26:34,0,26 0/1:11,5:16:43:43,0,132 0/0:9,1:10:9:0,9,106 +chr16 1894965 . C A 42.46 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.197;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.1698;MLEAC=1;MLEAF=0.125;MQ=28.61;MQ0=0;MQRankSum=-2.236;QD=2.36;ReadPosRankSum=1.920;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:18:77:77,0,269 0/0:16,1:17:15:0,15,167 0/0:15,1:16:2:0,2,258 0/0:5,0:5:3:0,3,39 +chr16 1927265 rs11863652 C T 1343.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.962;DB;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=4;MLEAF=0.500;MQ=36.63;MQ0=0;MQRankSum=-2.096;QD=10.34;ReadPosRankSum=0.917;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,13:31:99:415,0,589 0/1:26,12:38:99:372,0,739 0/1:24,11:35:99:291,0,754 0/1:14,12:26:99:308,0,443 +chr16 2030401 . G C 33.26 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.315;DP=19;Dels=0.00;FS=18.325;HaplotypeScore=1.1451;MLEAC=2;MLEAF=0.250;MQ=29.73;MQ0=0;MQRankSum=0.441;QD=3.02;ReadPosRankSum=-0.441;SB=5.95 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,87 0/1:4,1:5:17:17,0,109 0/0:5,0:5:6:0,6,74 0/1:4,2:6:13:56,0,13 +chr16 2051656 rs181962708 C T 273.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.232;DB;DP=68;Dels=0.00;FS=44.847;HaplotypeScore=8.1334;MLEAC=3;MLEAF=0.375;MQ=30.73;MQ0=0;MQRankSum=0.486;QD=5.17;ReadPosRankSum=-1.817;SB=2.00 GT:AD:DP:GQ:PL 0/1:15,4:19:83:83,0,347 0/1:11,7:18:99:186,0,99 0/0:14,0:15:21:0,21,254 0/1:14,2:16:48:48,0,226 +chr16 2052267 . G T 150.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.211;DP=69;Dels=0.00;FS=4.794;HaplotypeScore=5.0211;MLEAC=4;MLEAF=0.500;MQ=27.10;MQ0=0;MQRankSum=2.533;QD=2.18;ReadPosRankSum=0.482;SB=-9.981e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:13:13,0,183 0/1:15,2:17:41:41,0,127 0/1:17,3:20:68:68,0,264 0/1:14,3:17:71:71,0,136 +chr16 2052674 . C G 251.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.383;DP=84;Dels=0.05;FS=27.686;HaplotypeScore=10.7084;MLEAC=4;MLEAF=0.500;MQ=28.57;MQ0=0;MQRankSum=-2.556;QD=3.00;ReadPosRankSum=2.050;SB=-1.195e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:46:46,0,384 0/1:15,7:22:99:118,0,214 0/1:16,4:20:82:82,0,361 0/1:15,4:19:48:48,0,221 +chr16 2087565 . C T 59.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.058;DP=184;Dels=0.00;FS=24.527;HaplotypeScore=0.7419;MLEAC=1;MLEAF=0.125;MQ=35.39;MQ0=0;MQRankSum=-0.242;QD=1.23;ReadPosRankSum=-0.021;SB=-6.963e+00 GT:AD:DP:GQ:PL 0/0:43,2:45:20:0,20,860 0/0:45,3:48:24:0,24,1229 0/0:43,0:43:93:0,93,1146 0/1:41,6:48:95:95,0,861 +chr16 2130409 . T A 45.34 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.111;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.7162;MLEAC=3;MLEAF=0.375;MQ=27.03;MQ0=0;MQRankSum=-0.259;QD=1.74;ReadPosRankSum=1.816;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,1:2:26:26,0,38 0/1:10,1:11:11:11,0,101 0/0:10,0:10:21:0,21,195 0/1:11,2:13:51:51,0,70 +chr16 2136356 . T C 46.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.677;DP=72;Dels=0.00;FS=2.498;HaplotypeScore=3.5162;MLEAC=2;MLEAF=0.250;MQ=36.58;MQ0=0;MQRankSum=-0.743;QD=1.37;ReadPosRankSum=0.248;SB=0.080 GT:AD:DP:GQ:PL 0/0:18,0:18:30:0,30,378 0/1:14,2:16:39:39,0,272 0/0:20,0:20:36:0,36,459 0/1:16,2:18:49:49,0,119 +chr16 2150030 . T G 42.27 . AC=5;AF=0.833;AN=6;BaseQRankSum=-0.934;DP=37;Dels=0.00;FS=11.139;HaplotypeScore=0.3222;MLEAC=5;MLEAF=0.833;MQ=14.75;MQ0=0;MQRankSum=2.335;QD=1.46;ReadPosRankSum=0.623;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,1:9:3:25,3,0 ./. 0/1:6,1:7:27:28,0,27 1/1:12,1:13:3:27,3,0 +chr16 2259665 rs139565407 G A 36.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.019;DB;DP=146;Dels=0.00;FS=41.574;HaplotypeScore=6.7345;MLEAC=1;MLEAF=0.125;MQ=28.60;MQ0=0;MQRankSum=-0.380;QD=1.09;ReadPosRankSum=0.484;SB=-6.862e+00 GT:AD:DP:GQ:PL 0/1:29,5:34:73:73,0,615 0/0:37,0:37:75:0,75,828 0/0:41,2:44:61:0,61,1160 0/0:30,1:31:28:0,28,586 +chr16 2284515 rs3114131 C A 70.65 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.143;DB;DP=18;Dels=0.00;FS=6.803;HaplotypeScore=0.8866;MLEAC=3;MLEAF=0.500;MQ=26.43;MQ0=0;MQRankSum=0.143;QD=6.42;ReadPosRankSum=0.825;SB=0.074 GT:AD:DP:GQ:PL 1/1:3,2:5:6:71,6,0 ./. 0/1:4,2:6:40:40,0,54 0/0:3,1:4:6:0,6,69 +chr16 2326702 . C A 41.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.202;DP=98;Dels=0.01;FS=54.828;HaplotypeScore=7.3530;MLEAC=3;MLEAF=0.375;MQ=30.23;MQ0=0;MQRankSum=0.277;QD=0.54;ReadPosRankSum=0.311;SB=0.062 GT:AD:DP:GQ:PL 0/1:21,2:23:20:20,0,499 0/1:25,3:28:47:47,0,445 0/0:21,0:21:48:0,48,578 0/1:23,2:25:18:18,0,378 +chr16 2817251 . A G 193.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.903;DP=147;Dels=0.01;FS=83.422;HaplotypeScore=9.6375;MLEAC=4;MLEAF=0.500;MQ=29.64;MQ0=0;MQRankSum=-1.394;QD=1.74;ReadPosRankSum=0.635;SB=-1.668e+00 GT:AD:DP:GQ:PL 0/1:35,7:42:99:108,0,839 0/1:31,5:36:64:64,0,559 0/1:28,5:33:62:62,0,705 0/0:31,4:35:2:0,2,736 +chr16 3018048 . C G 49.30 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.322;DP=14;Dels=0.00;FS=6.990;HaplotypeScore=2.1441;MLEAC=5;MLEAF=0.833;MQ=16.47;MQ0=0;MQRankSum=1.920;QD=4.48;ReadPosRankSum=-0.956;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,1:4:3:28,3,0 1/1:3,1:4:3:32,3,0 0/1:1,1:3:21:27,0,21 ./. +chr16 3021164 . C G 38.05 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.441;DP=58;Dels=0.00;FS=11.591;HaplotypeScore=1.0240;MLEAC=2;MLEAF=0.250;MQ=28.40;MQ0=0;MQRankSum=-0.079;QD=1.03;ReadPosRankSum=1.124;SB=9.22 GT:AD:DP:GQ:PL 0/0:12,0:12:21:0,21,232 0/0:8,0:9:12:0,12,136 0/1:17,2:19:17:17,0,400 0/1:15,3:18:62:62,0,230 +chr16 3064092 . C T 69.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.676;DP=75;Dels=0.00;FS=2.509;HaplotypeScore=8.9419;MLEAC=4;MLEAF=0.500;MQ=22.76;MQ0=0;MQRankSum=-0.423;QD=0.93;ReadPosRankSum=4.057;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:24:24,0,181 0/1:14,2:16:30:30,0,173 0/1:18,3:21:23:23,0,180 0/1:17,4:22:35:35,0,44 +chr16 3142164 . G C 56.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.690;DP=92;Dels=0.00;FS=41.054;HaplotypeScore=5.0991;MLEAC=2;MLEAF=0.250;MQ=28.04;MQ0=0;MQRankSum=-2.096;QD=1.13;ReadPosRankSum=0.141;SB=3.33 GT:AD:DP:GQ:PL 0/0:27,2:29:38:0,38,732 0/1:15,3:18:48:48,0,262 0/1:27,4:32:50:50,0,539 0/0:13,0:13:30:0,30,350 +chr16 3254247 . A T 52 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.164;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=2.7113;MLEAC=1;MLEAF=0.125;MQ=32.17;MQ0=0;MQRankSum=-0.796;QD=4.00;ReadPosRankSum=0.919;SB=7.846e-03 GT:AD:DP:GQ:PL 0/0:16,0:16:30:0,30,313 0/1:9,4:13:88:88,0,141 0/0:13,0:13:30:0,30,337 0/0:10,0:10:24:0,24,275 +chr16 3364888 . T G 31.96 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.975;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.9990;MLEAC=2;MLEAF=0.250;MQ=22.76;MQ0=0;MQRankSum=1.046;QD=1.68;ReadPosRankSum=0.116;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:15:15,0,60 0/1:9,3:12:56:56,0,73 0/0:8,0:8:3:0,3,26 0/0:3,0:3:6:0,6,53 +chr16 3433591 . T A 125.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.175;DP=175;Dels=0.00;FS=31.036;HaplotypeScore=4.9766;MLEAC=2;MLEAF=0.250;MQ=35.60;MQ0=0;MQRankSum=-2.373;QD=1.50;ReadPosRankSum=1.788;SB=-3.887e-03 GT:AD:DP:GQ:PL 0/0:39,2:41:19:0,19,986 0/1:40,7:47:72:72,0,912 0/0:47,3:50:28:0,28,1068 0/1:31,6:37:95:95,0,823 +chr16 3434966 rs27231 T C 1595.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.629;DB;DP=141;Dels=0.00;FS=4.940;HaplotypeScore=1.4103;MLEAC=4;MLEAF=0.500;MQ=37.38;MQ0=0;MQRankSum=-3.524;QD=16.28;ReadPosRankSum=1.347;SB=-6.601e+01 GT:AD:DP:GQ:PL 1/1:4,29:33:81:1024,81,0 0/0:43,0:43:99:0,123,1608 0/1:24,13:37:99:334,0,834 0/1:18,10:28:99:286,0,622 +chr16 3613944 . A G 196.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.850;DP=92;Dels=0.00;FS=66.996;HaplotypeScore=11.3326;MLEAC=4;MLEAF=0.500;MQ=30.84;MQ0=0;MQRankSum=-2.772;QD=2.14;ReadPosRankSum=0.067;SB=0.011 GT:AD:DP:GQ:PL 0/1:17,3:20:47:47,0,397 0/1:21,4:25:26:26,0,422 0/1:18,7:25:99:146,0,516 0/1:19,3:22:20:20,0,432 +chr16 3843387 . C G 61.52 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.074;DP=160;Dels=0.01;FS=39.334;HaplotypeScore=16.1148;MLEAC=2;MLEAF=0.250;MQ=32.02;MQ0=0;MQRankSum=0.612;QD=0.68;ReadPosRankSum=0.074;SB=-3.715e+00 GT:AD:DP:GQ:PL 0/0:40,1:41:17:0,17,496 0/1:32,4:36:88:88,0,309 0/1:51,3:54:12:12,0,696 0/0:27,1:28:0:0,0,370 +chr16 4043574 . G T 91.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.586;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=12.5054;MLEAC=2;MLEAF=0.250;MQ=27.83;MQ0=0;MQRankSum=1.552;QD=2.35;ReadPosRankSum=0.202;SB=1.99 GT:AD:DP:GQ:PL 0/0:12,0:12:12:0,12,111 0/1:14,3:18:55:55,0,125 0/1:17,4:21:78:78,0,298 0/0:12,0:14:18:0,18,199 +chr16 4073152 rs2002487 A G 42.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=21.75;MQ0=0;MQRankSum=1.026;QD=10.50;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:35,3,0 1/1:1,1:2:3:40,3,0 ./. +chr16 4163598 . A T 79.37 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.487;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.1978;MLEAC=1;MLEAF=0.125;MQ=32.91;MQ0=0;MQRankSum=-1.280;QD=3.45;ReadPosRankSum=1.005;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,5:23:99:115,0,300 0/0:23,1:24:24:0,24,573 0/0:22,0:23:45:0,45,581 0/0:11,1:12:5:0,5,293 +chr16 4256705 rs13334805 G A 49 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.352;DB;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.7231;MLEAC=1;MLEAF=0.125;MQ=27.86;MQ0=0;MQRankSum=0.270;QD=4.45;ReadPosRankSum=0.048;SB=-4.279e-03 GT:AD:DP:GQ:PL 0/1:7,4:11:85:85,0,118 0/0:17,0:17:27:0,27,272 0/0:15,0:15:39:0,39,428 0/0:15,0:15:24:0,24,260 +chr16 4410206 . A C 76.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.510;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7362;MLEAC=3;MLEAF=0.375;MQ=27.99;MQ0=0;MQRankSum=-0.245;QD=1.11;ReadPosRankSum=0.884;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,0:26:45:0,45,549 0/1:22,4:26:29:29,0,422 0/1:20,3:23:45:45,0,280 0/1:16,4:20:46:46,0,318 +chr16 4412547 . G T 76.97 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.275;DP=49;Dels=0.00;FS=27.095;HaplotypeScore=5.7829;MLEAC=3;MLEAF=0.375;MQ=27.15;MQ0=0;MQRankSum=-2.163;QD=1.57;ReadPosRankSum=-0.309;SB=9.19 GT:AD:DP:GQ:PL 0/1:10,1:11:6:6,0,247 0/1:10,4:14:88:88,0,126 0/1:9,1:10:11:11,0,156 0/1:10,3:14:13:13,0,68 +chr16 4484447 . G T 284.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.678;DP=165;Dels=0.00;FS=165.252;HaplotypeScore=14.8831;MLEAC=3;MLEAF=0.375;MQ=29.35;MQ0=0;MQRankSum=-2.580;QD=1.95;ReadPosRankSum=2.064;SB=2.59 GT:AD:DP:GQ:PL 0/1:29,10:39:99:224,0,402 0/1:40,7:47:48:48,0,626 0/1:54,6:60:56:56,0,729 0/0:19,0:19:27:0,27,328 +chr16 4700475 . C T 247.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.135;DP=127;Dels=0.00;FS=120.499;HaplotypeScore=7.4153;MLEAC=3;MLEAF=0.375;MQ=30.13;MQ0=0;MQRankSum=-1.535;QD=2.82;ReadPosRankSum=-1.960;SB=3.82 GT:AD:DP:GQ:PL 0/1:26,5:31:88:88,0,340 0/0:35,3:39:7:0,7,653 0/1:29,7:36:99:141,0,650 0/1:18,3:21:61:61,0,365 +chr16 4729989 . C G 53.66 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.258;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=5.5823;MLEAC=3;MLEAF=0.375;MQ=22.04;MQ0=0;MQRankSum=-0.184;QD=1.92;ReadPosRankSum=1.438;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:9:0,9,84 0/1:6,3:10:38:38,0,90 0/1:9,1:10:15:15,0,40 0/1:5,2:7:13:43,0,13 +chr16 4776828 . T C 52.97 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.713;DP=105;Dels=0.00;FS=37.689;HaplotypeScore=2.6706;MLEAC=2;MLEAF=0.250;MQ=32.77;MQ0=0;MQRankSum=-4.228;QD=0.98;ReadPosRankSum=0.438;SB=-6.691e-01 GT:AD:DP:GQ:PL 0/0:21,2:23:24:0,24,602 0/1:24,6:30:76:76,0,567 0/0:26,2:28:12:0,12,704 0/1:21,3:24:18:18,0,530 +chr16 4810598 . A C 366.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.444;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7435;MLEAC=4;MLEAF=0.500;MQ=32.53;MQ0=0;MQRankSum=-2.976;QD=3.67;ReadPosRankSum=2.793;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,8:23:99:186,0,340 0/1:21,5:26:92:92,0,211 0/1:23,3:26:59:59,0,330 0/1:21,4:25:72:72,0,400 +chr16 4833688 . T C 112.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.737;DP=72;Dels=0.01;FS=46.626;HaplotypeScore=4.6514;MLEAC=3;MLEAF=0.375;MQ=32.10;MQ0=0;MQRankSum=-0.107;QD=2.05;ReadPosRankSum=-2.932;SB=-1.119e+00 GT:AD:DP:GQ:PL 0/1:12,5:17:99:127,0,206 0/1:20,2:22:21:21,0,414 0/0:16,1:17:9:0,9,434 0/1:13,2:15:6:6,0,326 +chr16 4862218 . T C 97.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.421;DP=89;Dels=0.01;FS=55.642;HaplotypeScore=10.7072;MLEAC=4;MLEAF=0.500;MQ=24.37;MQ0=0;MQRankSum=-0.890;QD=1.09;ReadPosRankSum=0.726;SB=-8.350e-01 GT:AD:DP:GQ:PL 0/1:15,3:18:6:6,0,243 0/1:13,3:16:29:29,0,202 0/1:24,5:29:55:55,0,326 0/1:20,5:25:49:49,0,192 +chr16 4927513 . T G 40.09 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.013;DP=54;Dels=0.04;FS=0.000;HaplotypeScore=15.3573;MLEAC=3;MLEAF=0.375;MQ=21.19;MQ0=0;MQRankSum=-0.200;QD=0.93;ReadPosRankSum=2.277;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:25:25,0,159 0/1:12,3:15:43:43,0,49 0/0:10,0:10:18:0,18,181 0/1:10,3:13:15:15,0,65 +chr16 4944518 rs1876363 C G 2102.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.558;DB;DP=81;Dels=0.00;FS=1.718;HaplotypeScore=1.6914;MLEAC=8;MLEAF=1.00;MQ=31.85;MQ0=0;MQRankSum=1.331;QD=25.96;ReadPosRankSum=3.669;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:5,11:16:33:412,33,0 1/1:4,15:19:20:434,20,0 1/1:4,23:27:48:779,48,0 1/1:4,15:19:42:517,42,0 +chr16 5121780 . T C 78.91 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.793;DP=16;Dels=0.00;FS=28.987;HaplotypeScore=1.1347;MLEAC=4;MLEAF=0.500;MQ=28.60;MQ0=0;MQRankSum=-1.309;QD=7.17;ReadPosRankSum=0.689;SB=8.23 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,77 0/1:3,1:4:13:13,0,74 0/1:3,2:5:52:52,0,59 1/1:0,2:2:6:58,6,0 +chr16 5339135 rs117226998 A G 231.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.572;DB;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.2585;MLEAC=3;MLEAF=0.375;MQ=21.70;MQ0=0;MQRankSum=0.481;QD=7.01;ReadPosRankSum=1.412;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:12:0,12,118 0/1:4,7:11:52:158,0,52 0/1:10,5:15:99:99,0,121 0/1:4,3:7:17:17,0,25 +chr16 7726691 rs2191134 A G 2481.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.681;DB;DP=68;Dels=0.01;FS=18.261;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=36.71;MQ0=0;MQRankSum=1.681;QD=36.50;ReadPosRankSum=-1.008;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:27:332,27,0 1/1:1,22:23:66:879,66,0 1/1:0,24:24:69:899,69,0 1/1:0,11:11:33:411,33,0 +chr16 7759164 rs7196923 T C 42.18 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.237;DB;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=5.9721;MLEAC=4;MLEAF=0.667;MQ=12.60;MQ0=0;MQRankSum=-0.884;QD=1.76;ReadPosRankSum=1.709;SB=-2.472e+01 GT:AD:DP:GQ:PL ./. 0/1:5,2:7:20:20,0,20 0/1:6,3:9:15:15,0,37 1/1:3,4:7:6:47,6,0 +chr16 7760819 . T C 289.55 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.138;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=3.8431;MLEAC=5;MLEAF=0.625;MQ=23.77;MQ0=0;MQRankSum=2.194;QD=6.73;ReadPosRankSum=2.154;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:65:85,0,65 0/1:7,5:12:33:120,0,33 1/1:8,4:12:9:92,9,0 0/1:3,3:6:33:37,0,33 +chr16 8057594 rs3105675 G T 39.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=15.52;MQ0=0;MQRankSum=0.736;QD=13.00;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:39,3,0 1/1:1,1:2:3:33,3,0 ./. +chr16 8736028 rs1614616 T C 2664.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.909;DB;DP=100;Dels=0.00;FS=13.981;HaplotypeScore=2.1384;MLEAC=8;MLEAF=1.00;MQ=36.91;MQ0=0;MQRankSum=1.935;QD=26.65;ReadPosRankSum=2.909;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:9,17:26:51:658,51,0 1/1:4,20:24:38:721,38,0 1/1:8,21:30:60:761,60,0 1/1:4,16:20:45:564,45,0 +chr16 8738579 rs1641067 A G 881.30 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.995;DB;DP=41;Dels=0.02;FS=4.095;HaplotypeScore=2.9002;MLEAC=8;MLEAF=1.00;MQ=26.27;MQ0=0;MQRankSum=1.888;QD=21.50;ReadPosRankSum=1.988;SB=-9.698e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:33:361,33,0 1/1:2,3:5:6:54,6,0 1/1:3,10:13:27:301,27,0 1/1:2,8:10:21:204,21,0 +chr16 9002291 . A C 78.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.794;DP=131;Dels=0.01;FS=2.262;HaplotypeScore=4.0909;MLEAC=3;MLEAF=0.375;MQ=27.10;MQ0=0;MQRankSum=0.205;QD=0.96;ReadPosRankSum=-0.971;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:34,4:39:54:54,0,454 0/1:28,4:34:46:46,0,385 0/0:46,2:49:6:0,6,484 0/1:7,1:8:21:21,0,23 +chr16 9030444 rs1382390 C G 5351.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.402;DB;DP=196;Dels=0.00;FS=10.622;HaplotypeScore=0.9839;MLEAC=8;MLEAF=1.00;MQ=34.58;MQ0=0;MQRankSum=1.331;QD=27.30;ReadPosRankSum=3.290;SB=-1.868e+03 GT:AD:DP:GQ:PL 1/1:10,39:49:99:1487,117,0 1/1:12,36:48:44:1166,44,0 1/1:11,58:69:99:2025,112,0 1/1:10,20:30:41:673,41,0 +chr16 9927947 . T C 1250.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.272;DP=223;Dels=0.00;FS=137.696;HaplotypeScore=1.9666;MLEAC=4;MLEAF=0.500;MQ=36.49;MQ0=0;MQRankSum=-0.807;QD=5.61;ReadPosRankSum=3.747;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:52,12:64:99:249,0,1355 0/1:43,16:59:99:407,0,1041 0/1:46,24:70:99:551,0,991 0/1:26,4:30:86:86,0,568 +chr16 9934931 . C G 39.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.814;DP=162;Dels=0.00;FS=4.592;HaplotypeScore=1.3228;MLEAC=2;MLEAF=0.250;MQ=33.76;MQ0=0;MQRankSum=-2.687;QD=0.62;ReadPosRankSum=-1.433;SB=-6.132e-01 GT:AD:DP:GQ:PL 0/1:45,5:50:70:70,0,932 0/0:49,0:49:96:0,96,1212 0/0:47,1:49:75:0,75,879 0/1:13,1:14:10:10,0,230 +chr16 9943853 . C A 64.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.767;DP=47;Dels=0.00;FS=2.944;HaplotypeScore=8.4109;MLEAC=2;MLEAF=0.250;MQ=21.12;MQ0=0;MQRankSum=-0.079;QD=2.79;ReadPosRankSum=1.133;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,2:12:6:0,6,59 0/0:10,2:12:9:0,9,73 1/1:9,1:10:3:23,3,0 0/1:8,5:13:14:83,0,14 +chr16 9984752 . G T 35.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.197;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.6923;MLEAC=3;MLEAF=0.375;MQ=20.25;MQ0=0;MQRankSum=1.811;QD=0.68;ReadPosRankSum=-3.040;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,1:19:4:4,0,176 0/1:21,2:24:22:22,0,148 0/0:23,0:23:24:0,24,248 0/1:8,2:10:51:51,0,70 +chr16 10205469 . CAT C 302.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.836;DP=38;FS=3.274;HaplotypeScore=35.4251;MLEAC=4;MLEAF=0.500;MQ=23.94;MQ0=0;MQRankSum=0.760;QD=7.96;ReadPosRankSum=-1.140;SB=-1.132e-03 GT:AD:DP:GQ:PL 0/1:8,2:8:92:92,0,143 0/1:5,3:6:50:133,0,50 0/1:2,2:3:46:46,0,73 0/1:9,4:5:83:83,0,90 +chr16 10721430 . A C 47.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.076;DP=73;Dels=0.04;FS=15.445;HaplotypeScore=6.2320;MLEAC=4;MLEAF=0.500;MQ=28.89;MQ0=0;MQRankSum=-0.514;QD=0.85;ReadPosRankSum=-0.701;SB=-2.815e+00 GT:AD:DP:GQ:PL 0/1:20,1:21:7:7,0,156 0/1:17,2:19:33:33,0,332 0/0:16,1:17:1:0,1,273 0/1:11,2:13:47:47,0,79 +chr16 10841096 . A G 79.33 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.865;DP=194;Dels=0.00;FS=43.194;HaplotypeScore=2.0649;MLEAC=3;MLEAF=0.375;MQ=14.77;MQ0=0;MQRankSum=2.550;QD=0.57;ReadPosRankSum=-1.582;SB=-5.644e-01 GT:AD:DP:GQ:PL 0/1:47,2:49:6:6,0,205 0/1:44,2:46:32:32,0,66 0/0:54,0:54:15:0,15,179 0/1:37,8:45:83:83,0,157 +chr16 10851781 . T A 55.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.823;DP=128;Dels=0.00;FS=12.270;HaplotypeScore=4.7996;MLEAC=3;MLEAF=0.375;MQ=29.58;MQ0=0;MQRankSum=-1.243;QD=0.58;ReadPosRankSum=-1.679;SB=-2.857e-02 GT:AD:DP:GQ:PL 0/1:26,3:29:39:39,0,561 0/1:34,4:38:27:27,0,726 0/0:31,0:32:51:0,51,598 0/1:26,3:29:33:33,0,511 +chr16 10855375 . AT A 334.09 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.346;DP=54;FS=0.000;HaplotypeScore=35.9361;MLEAC=5;MLEAF=0.625;MQ=20.29;MQ0=0;MQRankSum=1.102;QD=6.19;ReadPosRankSum=-0.220;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:11,4:7:22:127,0,22 0/1:9,4:9:63:171,0,63 0/1:12,2:9:45:45,0,140 1/1:7,1:2:4:43,4,0 +chr16 11118874 . C G 220.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.327;DP=66;Dels=0.05;FS=6.591;HaplotypeScore=9.8465;MLEAC=4;MLEAF=0.500;MQ=19.26;MQ0=0;MQRankSum=-1.815;QD=3.34;ReadPosRankSum=3.521;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,5:15:52:124,0,52 0/1:11,6:18:49:49,0,66 0/1:11,7:18:48:84,0,48 0/1:9,3:12:5:5,0,151 +chr16 11375150 . C A 130.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.970;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=4.5829;MLEAC=3;MLEAF=0.375;MQ=27.18;MQ0=0;MQRankSum=1.030;QD=2.73;ReadPosRankSum=-0.522;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:97:97,0,163 0/1:9,2:11:47:47,0,92 0/1:13,2:15:30:30,0,205 0/0:14,1:15:18:0,18,187 +chr16 11484385 . G T 33.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.358;DP=15;Dels=0.00;FS=8.751;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=13.38;MQ0=0;MQRankSum=1.231;QD=3.30;ReadPosRankSum=-1.231;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,1:4:3:36,3,0 ./. 1/1:5,1:6:3:30,3,0 ./. +chr16 11769928 . G C 34.14 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.768;DP=46;Dels=0.00;FS=12.441;HaplotypeScore=2.0408;MLEAC=3;MLEAF=0.375;MQ=28.88;MQ0=0;MQRankSum=1.768;QD=1.07;ReadPosRankSum=-0.118;SB=-1.161e-01 GT:AD:DP:GQ:PL 0/1:10,1:11:15:15,0,172 0/0:13,1:14:6:0,6,273 0/1:8,2:10:37:37,0,144 0/1:10,1:11:24:24,0,124 +chr16 11868212 . T C 45.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.779;DP=124;Dels=0.00;FS=46.185;HaplotypeScore=1.2346;MLEAC=2;MLEAF=0.250;MQ=36.34;MQ0=0;MQRankSum=-1.534;QD=0.82;ReadPosRankSum=0.445;SB=-2.197e+00 GT:AD:DP:GQ:PL 0/1:26,4:30:61:61,0,626 0/0:30,2:32:7:0,7,783 0/0:37,0:37:84:0,84,1099 0/1:22,3:25:25:25,0,578 +chr16 11945324 . C T 180.26 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.011;DP=62;Dels=0.02;FS=19.795;HaplotypeScore=13.0535;MLEAC=4;MLEAF=0.500;MQ=21.13;MQ0=0;MQRankSum=2.263;QD=3.76;ReadPosRankSum=0.754;SB=0.197 GT:AD:DP:GQ:PL 0/0:13,1:14:21:0,21,224 0/1:10,3:13:56:86,0,56 0/1:15,4:19:85:85,0,146 1/1:11,4:15:6:55,6,0 +chr16 11945341 . G T 69.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.838;DP=74;Dels=0.00;FS=2.360;HaplotypeScore=4.8548;MLEAC=3;MLEAF=0.375;MQ=28.23;MQ0=0;MQRankSum=1.122;QD=1.15;ReadPosRankSum=0.167;SB=0.066 GT:AD:DP:GQ:PL 0/0:13,0:13:18:0,18,201 0/1:15,2:17:34:34,0,324 0/1:17,2:20:18:18,0,211 0/1:20,3:24:61:61,0,118 +chr16 12183818 . T A 59.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.802;DP=32;Dels=0.03;FS=2.715;HaplotypeScore=1.2972;MLEAC=3;MLEAF=0.375;MQ=27.37;MQ0=0;MQRankSum=0.392;QD=2.57;ReadPosRankSum=-0.705;SB=0.290 GT:AD:DP:GQ:PL 0/1:4,1:5:29:29,0,58 0/0:9,0:9:12:0,12,154 0/1:7,2:9:35:35,0,69 0/1:6,2:8:38:38,0,56 +chr16 13297195 . A G 70.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.042;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=6.4443;MLEAC=2;MLEAF=0.250;MQ=31.38;MQ0=0;MQRankSum=-3.972;QD=1.20;ReadPosRankSum=1.471;SB=-1.186e-02 GT:AD:DP:GQ:PL 0/0:29,2:31:53:0,53,852 0/1:22,4:26:59:59,0,442 0/0:30,2:32:15:0,15,734 0/1:26,6:32:53:53,0,537 +chr16 14016232 . C G 82.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.274;DP=181;Dels=0.01;FS=25.192;HaplotypeScore=5.1811;MLEAC=3;MLEAF=0.375;MQ=11.94;MQ0=0;MQRankSum=3.362;QD=0.62;ReadPosRankSum=-0.552;SB=0.324 GT:AD:DP:GQ:PL 0/0:45,4:49:12:0,12,103 0/1:37,4:41:28:28,0,97 0/1:45,5:50:76:76,0,76 0/1:37,3:40:21:21,0,124 +chr16 14693842 . G A 51.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.074;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.0181;MLEAC=3;MLEAF=0.375;MQ=22.67;MQ0=0;MQRankSum=1.206;QD=0.49;ReadPosRankSum=0.590;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,3:34:54:54,0,188 0/1:55,3:58:31:31,0,468 0/0:34,0:34:30:0,30,280 0/1:11,3:14:9:9,0,106 +chr16 15204397 . T A 30.77 . AC=3;AF=0.500;AN=6;BaseQRankSum=-2.989;DP=85;Dels=0.00;FS=29.852;HaplotypeScore=2.6323;MLEAC=3;MLEAF=0.500;MQ=8.84;MQ0=0;MQRankSum=1.007;QD=0.79;ReadPosRankSum=-0.479;SB=0.266 GT:AD:DP:GQ:PL ./. 0/0:21,1:22:3:0,3,23 1/1:21,3:24:6:49,6,0 0/1:14,1:15:21:21,0,22 +chr16 15728536 . A G 222.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.350;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3226;MLEAC=4;MLEAF=0.500;MQ=31.72;MQ0=0;MQRankSum=-1.858;QD=2.36;ReadPosRankSum=3.807;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,5:20:99:103,0,221 0/1:18,5:23:98:98,0,417 0/1:34,5:39:55:55,0,800 0/1:11,1:12:8:8,0,221 +chr16 15771601 rs6498567 T C 1587.72 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.219;DB;DP=73;Dels=0.00;FS=8.413;HaplotypeScore=1.8770;MLEAC=7;MLEAF=0.875;MQ=31.54;MQ0=0;MQRankSum=0.438;QD=21.75;ReadPosRankSum=-0.041;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,7:9:12:169,12,0 0/1:12,8:20:99:206,0,322 1/1:1,20:21:54:661,54,0 1/1:5,18:23:48:596,48,0 +chr16 15880339 . A T 84.07 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.399;DP=102;Dels=0.01;FS=37.387;HaplotypeScore=7.1042;MLEAC=4;MLEAF=0.500;MQ=27.72;MQ0=0;MQRankSum=0.229;QD=1.14;ReadPosRankSum=-0.229;SB=-3.491e+00 GT:AD:DP:GQ:PL 0/1:16,3:19:43:43,0,370 0/0:26,1:27:1:0,1,289 0/1:27,2:29:5:5,0,523 0/1:22,4:26:75:75,0,316 +chr16 16162068 . A G 58.04 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.688;DP=201;Dels=0.01;FS=94.078;HaplotypeScore=6.1056;MLEAC=1;MLEAF=0.125;MQ=39.56;MQ0=0;MQRankSum=-3.041;QD=1.10;ReadPosRankSum=1.764;SB=-7.252e+00 GT:AD:DP:GQ:PL 0/0:50,1:51:99:0,129,1721 0/0:34,3:37:14:0,14,1082 0/0:54,3:57:45:0,45,1722 0/1:46,7:53:94:94,0,1461 +chr16 16219787 . C T 218.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.951;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.9773;MLEAC=3;MLEAF=0.375;MQ=33.51;MQ0=0;MQRankSum=-2.639;QD=3.27;ReadPosRankSum=2.193;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:40:40,0,350 0/0:17,0:17:15:0,15,194 0/1:21,7:28:99:162,0,333 0/1:17,3:20:60:60,0,247 +chr16 16418883 . A T 41.23 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.322;DP=17;Dels=0.00;FS=6.990;HaplotypeScore=1.4567;MLEAC=4;MLEAF=1.00;MQ=12.68;MQ0=0;MQRankSum=1.920;QD=3.17;ReadPosRankSum=-1.920;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:5,2:7:6:53,6,0 1/1:5,1:6:3:22,3,0 +chr16 17232083 rs139712582 TATTA T 1075.39 . AC=8;AF=1.00;AN=8;DB;DP=24;FS=0.000;HaplotypeScore=4.1903;MLEAC=8;MLEAF=1.00;MQ=26.71;MQ0=0;QD=44.81;RPA=2,1;RU=ATTA;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:1,4:4:12:248,12,0 1/1:2,5:6:18:396,18,0 1/1:0,5:5:15:342,15,0 1/1:4,2:2:6:137,6,0 +chr16 18531854 . T C 59.26 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.455;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7147;MLEAC=1;MLEAF=0.125;MQ=27.99;MQ0=0;MQRankSum=-0.586;QD=2.58;ReadPosRankSum=-0.455;SB=3.98 GT:AD:DP:GQ:PL 0/0:10,0:10:18:0,18,176 0/1:9,1:11:11:11,0,71 0/1:7,4:12:52:88,0,52 0/0:11,0:11:6:0,6,53 +chr16 18562907 . G C 48.99 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.454;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1851;MLEAC=4;MLEAF=0.500;MQ=22.49;MQ0=0;MQRankSum=-1.059;QD=1.11;ReadPosRankSum=0.454;SB=2.99 GT:AD:DP:GQ:PL 0/1:3,1:4:20:20,0,27 0/1:8,2:12:10:10,0,77 0/1:12,2:14:26:26,0,124 0/1:12,2:14:35:35,0,92 +chr16 19278384 . C T 65.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.088;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.7171;MLEAC=2;MLEAF=0.250;MQ=29.32;MQ0=0;MQRankSum=-1.752;QD=1.51;ReadPosRankSum=1.568;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:73:73,0,139 0/1:23,2:25:33:33,0,167 0/0:20,1:21:8:0,8,257 0/0:16,0:16:24:0,24,247 +chr16 19559245 . T A 118.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.399;DP=260;Dels=0.02;FS=0.000;HaplotypeScore=9.8452;MLEAC=2;MLEAF=0.250;MQ=30.18;MQ0=0;MQRankSum=-3.419;QD=0.74;ReadPosRankSum=4.186;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:66,7:73:84:84,0,1144 0/0:72,0:72:99:0,114,1324 0/1:76,9:86:76:76,0,980 0/0:24,1:25:45:0,45,532 +chr16 20043467 . G A 66.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.595;DP=143;Dels=0.01;FS=37.897;HaplotypeScore=10.2124;MLEAC=2;MLEAF=0.250;MQ=32.98;MQ0=0;MQRankSum=-0.081;QD=0.88;ReadPosRankSum=-0.682;SB=-3.157e-02 GT:AD:DP:GQ:PL 0/0:27,1:29:29:0,29,598 0/1:35,3:38:17:17,0,754 0/0:37,0:38:63:0,63,729 0/1:31,5:37:91:91,0,424 +chr16 20376931 . T G 114.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.365;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.1032;MLEAC=4;MLEAF=0.500;MQ=31.10;MQ0=0;MQRankSum=-1.165;QD=0.94;ReadPosRankSum=0.597;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,3:38:29:29,0,715 0/1:32,4:36:67:67,0,591 0/1:26,3:29:22:22,0,374 0/1:17,2:19:39:39,0,122 +chr16 20856547 . A G 74.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.856;DP=81;Dels=0.01;FS=3.251;HaplotypeScore=0.8414;MLEAC=2;MLEAF=0.250;MQ=30.05;MQ0=0;MQRankSum=-0.868;QD=2.13;ReadPosRankSum=0.085;SB=-2.821e+01 GT:AD:DP:GQ:PL 0/0:19,0:19:39:0,39,493 0/1:11,4:15:50:50,0,248 0/0:26,1:27:20:0,20,432 0/1:15,4:19:66:66,0,255 +chr16 21008557 . T C 231.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.905;DP=56;Dels=0.04;FS=2.746;HaplotypeScore=5.2754;MLEAC=4;MLEAF=0.500;MQ=23.03;MQ0=0;MQRankSum=1.648;QD=4.14;ReadPosRankSum=-0.937;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,4:15:98:103,0,98 0/1:10,1:11:20:21,0,20 0/1:11,6:17:86:86,0,113 0/1:6,5:11:64:64,0,82 +chr16 21086855 . G T 94.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.799;DP=299;Dels=0.00;FS=231.284;HaplotypeScore=9.7076;MLEAC=2;MLEAF=0.250;MQ=33.76;MQ0=0;MQRankSum=-2.990;QD=0.64;ReadPosRankSum=2.692;SB=-9.891e-01 GT:AD:DP:GQ:PL 0/1:67,9:76:81:81,0,1916 0/0:72,6:78:18:0,18,2116 0/1:64,7:71:55:55,0,1796 0/0:69,5:74:31:0,31,1828 +chr16 21092987 . A C 2004.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.744;DP=263;Dels=0.03;FS=341.133;HaplotypeScore=22.9237;MLEAC=4;MLEAF=0.500;MQ=29.27;MQ0=0;MQRankSum=-1.400;QD=7.62;ReadPosRankSum=-1.542;SB=-2.728e+01 GT:AD:DP:GQ:PL 0/1:39,23:62:99:584,0,693 0/1:56,31:89:99:636,0,959 0/1:47,18:66:99:426,0,846 0/1:20,17:39:99:401,0,254 +chr16 21161669 . T A 36.92 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.111;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.8484;MLEAC=3;MLEAF=0.375;MQ=26.78;MQ0=0;MQRankSum=-0.332;QD=1.76;ReadPosRankSum=1.511;SB=18.16 GT:AD:DP:GQ:PL 1/1:12,3:15:3:32,3,0 0/0:11,0:12:12:0,12,108 0/0:11,1:12:6:0,6,74 1/1:4,2:6:6:50,6,0 +chr16 21279144 rs78459225 G A 256.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.480;DB;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=0.4916;MLEAC=1;MLEAF=0.125;MQ=42.72;MQ0=0;MQRankSum=0.373;QD=14.28;ReadPosRankSum=0.788;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,8:17:99:293,0,325 0/0:10,0:10:30:0,30,423 0/0:11,0:11:33:0,33,473 0/0:10,0:10:30:0,30,389 +chr16 21414723 . G A 45.75 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.003;DP=320;Dels=0.00;FS=8.594;HaplotypeScore=24.1570;MLEAC=1;MLEAF=0.125;MQ=19.66;MQ0=0;MQRankSum=-1.243;QD=0.30;ReadPosRankSum=1.278;SB=-4.891e+01 GT:AD:DP:GQ:PL 0/1:59,9:68:80:80,0,628 0/1:70,14:85:2:2,0,806 0/0:73,10:84:11:0,11,604 0/0:79,2:83:84:0,84,812 +chr16 21848681 . G A 296.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.969;DP=272;Dels=0.01;FS=9.683;HaplotypeScore=6.9379;MLEAC=4;MLEAF=0.500;MQ=16.85;MQ0=0;MQRankSum=2.923;QD=1.09;ReadPosRankSum=-0.702;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:52,7:60:79:79,0,377 0/1:64,10:74:84:84,0,421 0/1:58,8:66:55:55,0,467 0/1:57,11:68:99:121,0,395 +chr16 21848736 rs78485884 A G 66.74 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.526;DB;DP=289;Dels=0.01;FS=1.110;HaplotypeScore=8.0324;MLEAC=5;MLEAF=0.625;MQ=7.35;MQ0=0;MQRankSum=4.947;QD=0.23;ReadPosRankSum=-0.690;SB=5.79 GT:AD:DP:GQ:PL 0/1:63,2:68:13:13,0,72 0/1:72,6:78:35:36,0,35 0/1:68,2:70:34:34,0,35 1/1:68,2:70:3:26,3,0 +chr16 22163869 . A G 592.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.897;DP=205;Dels=0.00;FS=100.171;HaplotypeScore=2.7125;MLEAC=4;MLEAF=0.500;MQ=36.57;MQ0=0;MQRankSum=-5.658;QD=2.89;ReadPosRankSum=2.018;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:34,9:43:99:209,0,939 0/1:38,8:46:99:149,0,973 0/1:59,9:68:99:105,0,1375 0/1:37,10:48:99:172,0,973 +chr16 22167251 . C T 46.15 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.039;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.4660;MLEAC=2;MLEAF=0.250;MQ=36.04;MQ0=0;MQRankSum=-0.884;QD=0.73;ReadPosRankSum=0.359;SB=0.512 GT:AD:DP:GQ:PL 0/0:28,2:30:7:0,7,627 0/1:27,3:30:30:30,0,575 0/0:30,3:33:19:0,19,711 0/1:29,4:33:57:57,0,564 +chr16 22284854 . A G 182.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.400;DP=116;Dels=0.00;FS=2.245;HaplotypeScore=2.3022;MLEAC=3;MLEAF=0.375;MQ=35.10;MQ0=0;MQRankSum=-1.279;QD=2.20;ReadPosRankSum=0.886;SB=-8.132e-03 GT:AD:DP:GQ:PL 0/1:20,5:26:99:117,0,276 0/1:29,4:33:80:80,0,458 0/0:32,1:33:33:0,33,727 0/1:22,2:24:29:29,0,288 +chr16 22325011 . T G 30.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.513;DP=105;Dels=0.00;FS=7.129;HaplotypeScore=3.9317;MLEAC=3;MLEAF=0.375;MQ=34.42;MQ0=0;MQRankSum=-1.151;QD=0.39;ReadPosRankSum=1.016;SB=-4.232e-01 GT:AD:DP:GQ:PL 0/1:22,2:24:12:12,0,514 0/1:24,3:27:22:22,0,554 0/0:27,0:27:54:0,54,637 0/1:24,3:27:39:39,0,382 +chr16 22335881 . A G 89.17 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.551;DP=153;Dels=0.01;FS=55.345;HaplotypeScore=6.5627;MLEAC=4;MLEAF=0.500;MQ=36.55;MQ0=0;MQRankSum=-4.662;QD=0.58;ReadPosRankSum=-0.577;SB=-5.983e-01 GT:AD:DP:GQ:PL 0/1:31,4:35:9:9,0,881 0/1:38,4:42:36:36,0,980 0/1:34,4:38:14:14,0,973 0/1:29,6:36:72:72,0,898 +chr16 22343518 . T G 103.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.757;DP=114;Dels=0.00;FS=32.937;HaplotypeScore=1.9752;MLEAC=3;MLEAF=0.375;MQ=36.50;MQ0=0;MQRankSum=-2.702;QD=1.28;ReadPosRankSum=1.417;SB=1.41 GT:AD:DP:GQ:PL 0/1:29,4:34:77:77,0,513 0/1:28,4:32:30:30,0,550 0/0:31,1:33:23:0,23,572 0/1:13,2:15:40:40,0,230 +chr16 22376329 . T C 208.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.697;DP=126;Dels=0.00;FS=4.649;HaplotypeScore=5.0619;MLEAC=3;MLEAF=0.375;MQ=34.30;MQ0=0;MQRankSum=-2.906;QD=2.27;ReadPosRankSum=0.769;SB=-1.756e-03 GT:AD:DP:GQ:PL 0/1:23,8:31:99:150,0,521 0/0:33,1:34:27:0,27,639 0/1:32,4:36:43:43,0,316 0/1:22,3:25:59:59,0,260 +chr16 22543704 . G A 219.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.562;DP=184;Dels=0.00;FS=1.058;HaplotypeScore=2.8068;MLEAC=3;MLEAF=0.375;MQ=16.70;MQ0=0;MQRankSum=3.061;QD=1.55;ReadPosRankSum=1.564;SB=-5.705e+01 GT:AD:DP:GQ:PL 0/1:39,3:43:21:21,0,365 0/0:41,2:43:11:0,11,335 0/1:43,4:47:58:58,0,366 0/1:41,10:51:99:183,0,186 +chr16 22546169 . C G 447.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.992;DP=456;Dels=0.00;FS=33.421;HaplotypeScore=20.1119;MLEAC=4;MLEAF=0.500;MQ=23.83;MQ0=0;MQRankSum=-2.340;QD=0.98;ReadPosRankSum=9.242;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:74,24:98:99:337,0,657 0/1:98,14:114:26:26,0,1111 0/1:100,13:115:59:59,0,975 0/1:111,18:129:68:68,0,1424 +chr16 23079794 . A G 126.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.625;DP=156;Dels=0.01;FS=91.448;HaplotypeScore=15.5949;MLEAC=3;MLEAF=0.375;MQ=30.52;MQ0=0;MQRankSum=-2.173;QD=1.10;ReadPosRankSum=-0.197;SB=2.47 GT:AD:DP:GQ:PL 0/1:30,3:33:35:35,0,605 0/1:33,5:38:42:42,0,601 0/0:40,1:41:72:0,72,895 0/1:36,7:43:93:93,0,699 +chr16 23099108 . G T 162.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.090;DP=49;Dels=0.00;FS=45.936;HaplotypeScore=5.6914;MLEAC=3;MLEAF=0.375;MQ=27.31;MQ0=0;MQRankSum=0.377;QD=4.77;ReadPosRankSum=0.796;SB=3.97 GT:AD:DP:GQ:PL 0/1:10,2:12:61:61,0,80 0/0:15,0:15:12:0,12,153 0/1:15,5:20:99:113,0,129 1/1:0,2:2:3:32,3,0 +chr16 23505774 . A C 30.26 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.922;DP=27;Dels=0.00;FS=6.264;HaplotypeScore=7.1256;MLEAC=3;MLEAF=0.750;MQ=15.68;MQ0=0;MQRankSum=0.000;QD=4.32;ReadPosRankSum=1.368;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,3:7:6:65,6,0 ./. 0/0:6,1:7:3:0,3,31 ./. +chr16 23596669 . C A 124.51 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.443;DP=78;Dels=0.01;FS=2.401;HaplotypeScore=8.9030;MLEAC=2;MLEAF=0.250;MQ=34.06;MQ0=0;MQRankSum=-3.510;QD=2.49;ReadPosRankSum=-1.204;SB=0.100 GT:AD:DP:GQ:PL 0/1:23,4:27:70:70,0,460 0/1:18,5:23:94:94,0,338 0/0:20,1:21:1:0,1,303 0/0:6,0:6:15:0,15,194 +chr16 23625484 . T G 107.25 . AC=5;AF=0.833;AN=6;BaseQRankSum=-0.555;DP=18;Dels=0.00;FS=6.021;HaplotypeScore=2.2231;MLEAC=5;MLEAF=0.833;MQ=24.96;MQ0=0;MQRankSum=0.555;QD=6.31;ReadPosRankSum=1.479;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,6:9:30:82,0,30 1/1:5,2:7:3:32,3,0 ./. 1/1:0,1:1:3:31,3,0 +chr16 23701321 . C A 129.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.958;DP=94;Dels=0.00;FS=15.156;HaplotypeScore=5.5042;MLEAC=3;MLEAF=0.375;MQ=17.32;MQ0=0;MQRankSum=0.343;QD=1.69;ReadPosRankSum=-1.182;SB=-2.257e+00 GT:AD:DP:GQ:PL 0/1:22,5:27:47:47,0,219 0/1:23,5:28:34:34,0,74 0/0:16,1:17:18:0,18,185 0/1:17,5:22:92:92,0,106 +chr16 23703491 . C G 63.45 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.128;DP=111;Dels=0.01;FS=37.033;HaplotypeScore=6.3298;MLEAC=4;MLEAF=0.500;MQ=24.57;MQ0=0;MQRankSum=-0.403;QD=0.57;ReadPosRankSum=-0.147;SB=-4.719e+00 GT:AD:DP:GQ:PL 0/1:22,1:24:6:6,0,185 0/1:23,2:25:38:38,0,44 0/1:32,2:34:2:2,0,390 0/1:23,4:27:57:57,0,126 +chr16 24124149 rs147121142 AAAAACAAACC A 2186.21 . AC=8;AF=1.00;AN=8;BaseQRankSum=-1.419;DB;DP=50;FS=0.000;HaplotypeScore=5.6303;MLEAC=8;MLEAF=1.00;MQ=20.77;MQ0=0;MQRankSum=1.419;QD=43.72;RPA=2,1;RU=AAAACAAACC;ReadPosRankSum=-1.261;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:2,8:8:21:727,21,0 1/1:9,9:9:18:594,18,0 1/1:10,4:6:12:450,12,0 1/1:4,4:5:9:463,9,0 +chr16 24135389 . C T 205.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.803;DP=82;Dels=0.00;FS=14.307;HaplotypeScore=5.2392;MLEAC=4;MLEAF=0.500;MQ=19.62;MQ0=0;MQRankSum=0.144;QD=2.51;ReadPosRankSum=1.682;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:20:20,0,98 0/1:16,8:24:47:80,0,47 0/1:13,9:22:32:69,0,32 0/1:13,7:20:68:79,0,68 +chr16 24185857 . T A 45.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.181;DP=83;Dels=0.00;FS=45.059;HaplotypeScore=0.9106;MLEAC=2;MLEAF=0.250;MQ=38.07;MQ0=0;MQRankSum=-1.208;QD=1.06;ReadPosRankSum=-1.073;SB=-2.027e+00 GT:AD:DP:GQ:PL 0/1:16,3:19:51:51,0,415 0/0:27,1:28:15:0,15,592 0/1:21,3:24:35:35,0,527 0/0:11,1:12:4:0,4,372 +chr16 24573451 . G T 79.29 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.498;DP=176;Dels=0.00;FS=14.395;HaplotypeScore=4.0122;MLEAC=1;MLEAF=0.125;MQ=36.00;MQ0=0;MQRankSum=-0.735;QD=3.78;ReadPosRankSum=-2.143;SB=-5.734e+00 GT:AD:DP:GQ:PL 0/0:52,1:53:99:0,102,1529 0/0:50,2:52:70:0,70,1397 0/0:47,3:50:6:0,6,1158 0/1:16,5:21:99:115,0,298 +chr16 24574966 . G T 31.63 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.695;DP=80;Dels=0.03;FS=44.541;HaplotypeScore=4.7641;MLEAC=3;MLEAF=0.375;MQ=29.53;MQ0=0;MQRankSum=1.323;QD=0.61;ReadPosRankSum=0.033;SB=-9.404e-01 GT:AD:DP:GQ:PL 0/1:17,2:19:32:32,0,328 0/1:22,2:24:24:24,0,340 0/0:25,2:28:4:0,4,557 0/1:6,1:7:17:17,0,86 +chr16 24583406 rs7593 A G 2405.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.696;DB;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.2027;MLEAC=7;MLEAF=0.875;MQ=29.23;MQ0=0;MQRankSum=-0.682;QD=19.56;ReadPosRankSum=3.284;SB=-8.660e+02 GT:AD:DP:GQ:PL 0/1:25,13:38:99:331,0,673 1/1:2,25:27:69:787,69,0 1/1:8,25:33:47:754,47,0 1/1:1,24:25:54:578,54,0 +chr16 24804761 . T G 64.52 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.801;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.4692;MLEAC=2;MLEAF=0.250;MQ=37.52;MQ0=0;MQRankSum=0.788;QD=1.09;ReadPosRankSum=-0.563;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,3:29:15:15,0,759 0/1:24,6:30:90:90,0,594 0/0:26,2:28:9:0,9,687 0/0:27,1:28:12:0,12,573 +chr16 25151398 rs10681142 A ACT 169.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.427;DB;DP=51;FS=0.000;HaplotypeScore=10.1255;MLEAC=1;MLEAF=0.125;MQ=33.94;MQ0=0;MQRankSum=-0.235;QD=12.07;RPA=1,2;RU=CT;ReadPosRankSum=1.102;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:9,5:13:99:214,0,365 0/0:17,0:16:48:0,48,809 0/0:13,0:12:36:0,36,606 0/0:7,0:4:12:0,12,203 +chr16 25522758 . C T 159.27 . AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=26.54;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:0,6:6:15:192,15,0 +chr16 27221499 . T G 43.37 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.451;DP=97;Dels=0.01;FS=2.349;HaplotypeScore=2.2175;MLEAC=2;MLEAF=0.250;MQ=28.27;MQ0=0;MQRankSum=1.689;QD=1.14;ReadPosRankSum=-2.549;SB=1.33 GT:AD:DP:GQ:PL 0/0:23,1:24:10:0,10,400 0/1:15,3:18:74:74,0,168 0/0:33,1:34:47:0,47,775 0/1:19,1:20:9:9,0,235 +chr16 27224887 . C T 104.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.399;DP=112;Dels=0.02;FS=135.960;HaplotypeScore=5.7206;MLEAC=4;MLEAF=0.500;MQ=28.26;MQ0=0;MQRankSum=-2.409;QD=0.93;ReadPosRankSum=0.036;SB=-1.255e+00 GT:AD:DP:GQ:PL 0/1:28,4:32:22:22,0,599 0/1:25,5:30:26:26,0,314 0/1:23,7:30:65:65,0,443 0/1:15,3:18:34:34,0,123 +chr16 27374207 . G A 64.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.160;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=11.8943;MLEAC=1;MLEAF=0.125;MQ=26.59;MQ0=0;MQRankSum=-0.532;QD=1.42;ReadPosRankSum=-0.618;SB=-5.407e+01 GT:AD:DP:GQ:PL 0/0:39,1:40:31:0,31,598 0/0:41,2:43:18:0,18,614 0/0:45,1:47:62:0,62,847 0/1:39,6:45:99:100,0,370 +chr16 27472843 . C A 357.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.799;DP=114;Dels=0.00;FS=63.796;HaplotypeScore=14.9930;MLEAC=4;MLEAF=0.500;MQ=29.01;MQ0=0;MQRankSum=-1.760;QD=3.14;ReadPosRankSum=3.864;SB=0.151 GT:AD:DP:GQ:PL 0/1:23,8:32:99:194,0,308 0/1:25,2:28:18:18,0,376 0/1:23,2:27:15:15,0,386 0/1:18,7:27:99:173,0,165 +chr16 27473781 . C T 68.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.448;DP=36;Dels=0.03;FS=39.678;HaplotypeScore=6.9483;MLEAC=2;MLEAF=0.250;MQ=17.45;MQ0=0;MQRankSum=0.395;QD=3.11;ReadPosRankSum=-0.184;SB=-5.488e-01 GT:AD:DP:GQ:PL 0/0:6,0:6:3:0,3,25 0/1:6,2:8:21:21,0,27 0/0:6,2:8:9:0,9,78 0/1:7,6:13:41:87,0,41 +chr16 27549571 . T C 783.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.451;DP=150;Dels=0.00;FS=224.752;HaplotypeScore=23.3917;MLEAC=4;MLEAF=0.500;MQ=28.41;MQ0=0;MQRankSum=-5.594;QD=5.22;ReadPosRankSum=1.313;SB=-2.890e+00 GT:AD:DP:GQ:PL 0/1:28,14:42:99:225,0,620 0/1:19,8:28:99:128,0,283 0/1:28,13:41:99:110,0,462 0/1:23,16:39:99:363,0,363 +chr16 27561126 . T G 87.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.061;DP=45;Dels=0.00;FS=33.961;HaplotypeScore=1.0899;MLEAC=2;MLEAF=0.250;MQ=30.62;MQ0=0;MQRankSum=-0.418;QD=3.38;ReadPosRankSum=-0.110;SB=2.44 GT:AD:DP:GQ:PL 0/1:8,2:10:40:40,0,159 0/0:8,1:9:12:0,12,111 0/1:12,4:16:89:89,0,235 0/0:10,0:10:15:0,15,198 +chr16 28137310 . C G 31.26 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.736;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=25.33;MQ0=0;MQRankSum=0.736;QD=7.81;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,2:4:6:66,6,0 ./. 0/0:1,0:1:3:0,3,36 +chr16 28507999 . T A 62.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.324;DP=24;Dels=0.00;FS=8.929;HaplotypeScore=2.4412;MLEAC=4;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=0.880;QD=3.14;ReadPosRankSum=-0.417;SB=-6.812e-01 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,67 0/1:7,1:8:9:9,0,155 1/1:4,1:5:3:38,3,0 0/1:4,3:7:23:58,0,23 +chr16 28509466 . G T 87.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.709;DP=69;Dels=0.04;FS=32.998;HaplotypeScore=6.8317;MLEAC=3;MLEAF=0.375;MQ=25.69;MQ0=0;MQRankSum=1.041;QD=1.57;ReadPosRankSum=2.106;SB=-4.587e-01 GT:AD:DP:GQ:PL 0/1:12,1:13:6:6,0,226 0/0:13,0:13:18:0,18,215 0/1:20,5:25:99:115,0,319 0/1:14,1:15:7:7,0,199 +chr16 28619911 rs1126447 T C 71.03 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.796;DB;DP=60;Dels=0.00;FS=6.992;HaplotypeScore=3.3242;MLEAC=5;MLEAF=0.625;MQ=12.82;MQ0=0;MQRankSum=-0.300;QD=1.27;ReadPosRankSum=-1.912;SB=2.501e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:48,6,0 0/1:43,7:50:35:35,0,117 1/1:1,2:3:3:31,3,0 0/0:3,1:4:3:0,3,29 +chr16 28890488 . C T 85.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.592;DP=69;Dels=0.01;FS=9.547;HaplotypeScore=6.0869;MLEAC=4;MLEAF=0.500;MQ=21.73;MQ0=0;MQRankSum=-2.526;QD=1.24;ReadPosRankSum=1.367;SB=-2.855e-02 GT:AD:DP:GQ:PL 0/1:15,6:21:44:44,0,342 0/1:8,8:16:31:31,0,89 0/1:9,5:14:33:33,0,61 0/1:9,8:17:20:20,0,54 +chr16 28912332 . T C 77.29 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.112;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=5.2073;MLEAC=3;MLEAF=0.500;MQ=22.39;MQ0=0;MQRankSum=1.156;QD=2.67;ReadPosRankSum=-0.336;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:24:24,0,29 0/1:7,1:8:28:28,0,45 0/1:9,4:13:64:64,0,94 ./. +chr16 28943812 . G A 466.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.417;DP=100;Dels=0.00;FS=20.941;HaplotypeScore=2.6436;MLEAC=4;MLEAF=0.500;MQ=30.88;MQ0=0;MQRankSum=-0.485;QD=4.67;ReadPosRankSum=1.503;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:58:58,0,255 0/1:21,6:27:99:130,0,429 0/1:23,6:29:85:85,0,479 0/1:16,10:26:99:236,0,214 +chr16 28947970 rs190388624 C T 78.04 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.465;DB;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.4573;MLEAC=4;MLEAF=0.667;MQ=18.30;MQ0=0;MQRankSum=0.465;QD=3.12;ReadPosRankSum=0.211;SB=0.347 GT:AD:DP:GQ:PL 0/1:4,4:8:34:45,0,34 0/1:5,4:9:24:24,0,25 1/1:4,4:8:6:49,6,0 ./. +chr16 28989361 . G A 33.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.593;DP=181;Dels=0.00;FS=35.320;HaplotypeScore=2.6422;MLEAC=1;MLEAF=0.125;MQ=32.04;MQ0=0;MQRankSum=-3.021;QD=0.85;ReadPosRankSum=-1.827;SB=-4.777e+00 GT:AD:DP:GQ:PL 0/0:43,3:46:35:0,35,1050 0/0:44,1:45:69:0,69,1091 0/0:50,0:50:96:0,96,1119 0/1:35,5:40:70:70,0,654 +chr16 28989473 . T G 217.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.430;DP=115;Dels=0.00;FS=2.306;HaplotypeScore=6.7359;MLEAC=3;MLEAF=0.375;MQ=25.17;MQ0=0;MQRankSum=0.601;QD=2.47;ReadPosRankSum=2.063;SB=1.43 GT:AD:DP:GQ:PL 0/1:24,5:29:93:93,0,364 0/0:24,3:27:13:0,13,396 0/1:27,3:32:31:31,0,365 0/1:21,6:27:99:136,0,197 +chr16 29644794 rs11150561 A G 69.24 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.350;DB;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.1928;MLEAC=5;MLEAF=0.833;MQ=9.36;MQ0=0;MQRankSum=2.978;QD=1.00;ReadPosRankSum=-2.678;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:22,1:23:3:30,3,0 0/1:20,2:22:44:44,0,53 1/1:23,1:24:3:33,3,0 +chr16 29847959 . G C 110.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.914;DP=78;Dels=0.00;FS=2.302;HaplotypeScore=3.5779;MLEAC=3;MLEAF=0.375;MQ=24.76;MQ0=0;MQRankSum=-0.645;QD=1.81;ReadPosRankSum=1.299;SB=-3.029e-01 GT:AD:DP:GQ:PL 0/1:17,4:21:74:74,0,218 0/0:17,0:17:21:0,21,216 0/1:18,2:20:10:10,0,312 0/1:16,4:20:69:69,0,182 +chr16 29876123 . T A 48.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.962;DP=105;Dels=0.00;FS=16.253;HaplotypeScore=5.4764;MLEAC=2;MLEAF=0.250;MQ=31.92;MQ0=0;MQRankSum=-1.212;QD=1.06;ReadPosRankSum=-0.495;SB=-1.960e-03 GT:AD:DP:GQ:PL 0/1:13,3:16:51:51,0,236 0/0:27,0:27:51:0,51,598 0/0:31,1:32:43:0,43,779 0/1:26,4:30:39:39,0,615 +chr16 29916128 . T C 110.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.397;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9824;MLEAC=3;MLEAF=0.375;MQ=32.04;MQ0=0;MQRankSum=-1.688;QD=2.83;ReadPosRankSum=2.822;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:56:56,0,138 0/1:9,2:11:42:42,0,132 0/0:17,1:18:5:0,5,266 0/1:10,3:13:54:54,0,187 +chr16 29982961 rs9932702 C T 698.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.769;DB;DP=92;Dels=0.00;FS=2.910;HaplotypeScore=0.2235;MLEAC=4;MLEAF=0.500;MQ=27.69;MQ0=0;MQRankSum=-2.277;QD=7.59;ReadPosRankSum=-0.501;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,8:31:99:178,0,579 0/1:15,10:25:99:196,0,316 0/1:8,7:15:99:179,0,140 0/1:11,10:21:99:188,0,174 +chr16 29989691 . T A 1157.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.840;DP=270;Dels=0.00;FS=0.000;HaplotypeScore=4.4685;MLEAC=4;MLEAF=0.500;MQ=36.60;MQ0=0;MQRankSum=-7.972;QD=4.29;ReadPosRankSum=-1.551;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:54,6:60:99:108,0,825 0/1:59,14:73:99:352,0,769 0/1:61,10:71:99:195,0,1164 0/1:47,19:66:99:545,0,583 +chr16 29990767 . A G 57.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.725;DP=35;Dels=0.00;FS=28.288;HaplotypeScore=2.4901;MLEAC=2;MLEAF=0.250;MQ=37.69;MQ0=0;MQRankSum=-2.659;QD=3.20;ReadPosRankSum=-0.940;SB=1.08 GT:AD:DP:GQ:PL 0/0:7,0:7:18:0,18,248 0/1:8,3:11:60:60,0,261 0/0:10,0:10:18:0,18,225 0/1:5,2:7:39:39,0,108 +chr16 29995099 . T G 32.91 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.681;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.4911;MLEAC=2;MLEAF=0.250;MQ=33.64;MQ0=0;MQRankSum=-1.769;QD=0.84;ReadPosRankSum=2.967;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:64:64,0,306 0/0:13,1:14:7:0,7,352 0/1:19,2:21:8:8,0,388 0/0:17,0:17:27:0,27,300 +chr16 30128845 . A T 67.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.065;DP=43;Dels=0.05;FS=0.000;HaplotypeScore=3.4368;MLEAC=3;MLEAF=0.375;MQ=25.48;MQ0=0;MQRankSum=-0.875;QD=1.92;ReadPosRankSum=1.925;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:41:45,0,41 0/1:9,1:10:12:12,0,143 0/0:8,0:8:3:0,3,23 0/1:9,3:12:51:51,0,104 +chr16 30408765 rs12921440 C T 2127.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.755;DB;DP=186;Dels=0.01;FS=1.476;HaplotypeScore=5.3628;MLEAC=4;MLEAF=0.500;MQ=35.74;MQ0=0;MQRankSum=-1.991;QD=11.44;ReadPosRankSum=1.207;SB=-3.280e+02 GT:AD:DP:GQ:PL 0/1:26,18:44:99:563,0,648 0/1:22,16:38:99:538,0,444 0/1:30,24:55:99:778,0,831 0/1:35,13:48:99:291,0,901 +chr16 30409241 rs34843513 A G 99.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.338;DB;DP=122;Dels=0.00;FS=1.672;HaplotypeScore=7.0429;MLEAC=1;MLEAF=0.125;MQ=31.60;MQ0=0;MQRankSum=0.410;QD=3.12;ReadPosRankSum=-1.476;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/0:26,0:26:63:0,63,781 0/1:26,6:32:99:136,0,612 0/0:37,0:37:93:0,93,1157 0/0:27,0:27:60:0,60,695 +chr16 30419589 . C T 158.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.751;DP=102;Dels=0.02;FS=9.665;HaplotypeScore=8.4668;MLEAC=3;MLEAF=0.375;MQ=26.01;MQ0=0;MQRankSum=-0.823;QD=1.99;ReadPosRankSum=0.884;SB=-1.818e+00 GT:AD:DP:GQ:PL 0/1:18,5:23:99:99,0,442 0/1:22,7:30:91:91,0,301 0/1:23,3:26:9:9,0,348 0/0:20,1:21:2:0,2,300 +chr16 30484134 . C A 172.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.167;DP=50;Dels=0.00;FS=11.108;HaplotypeScore=2.5862;MLEAC=4;MLEAF=0.500;MQ=26.72;MQ0=0;MQRankSum=0.441;QD=3.45;ReadPosRankSum=0.380;SB=-3.006e-03 GT:AD:DP:GQ:PL 0/1:9,1:10:21:21,0,65 0/1:4,5:9:69:103,0,69 0/1:17,5:22:72:72,0,193 0/1:8,1:9:19:19,0,86 +chr16 30495657 rs7197010 T C 301.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.044;DB;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.4996;MLEAC=4;MLEAF=0.500;MQ=27.68;MQ0=0;MQRankSum=-1.775;QD=5.80;ReadPosRankSum=-0.071;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:30:0,30,349 1/1:0,12:12:18:219,18,0 0/1:14,7:21:33:33,0,228 0/1:11,8:19:98:98,0,212 +chr16 30531270 . T A 723.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.846;DP=176;Dels=0.00;FS=11.796;HaplotypeScore=1.4975;MLEAC=4;MLEAF=0.500;MQ=32.29;MQ0=0;MQRankSum=2.845;QD=4.11;ReadPosRankSum=-0.524;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,11:42:99:232,0,533 0/1:37,6:43:99:116,0,536 0/1:40,11:51:99:223,0,718 0/1:31,9:40:99:195,0,728 +chr16 30567112 . C A 48.03 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.000;DP=26;Dels=0.04;FS=6.767;HaplotypeScore=1.8351;MLEAC=4;MLEAF=0.500;MQ=16.49;MQ0=0;MQRankSum=2.223;QD=2.18;ReadPosRankSum=-1.799;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,1:5:3:29,3,0 0/1:8,1:9:27:27,0,39 0/0:4,0:4:6:0,6,56 1/1:6,1:7:3:35,3,0 +chr16 30715264 . A T 38.91 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.474;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=27.59;MQ0=0;MQRankSum=-2.733;QD=0.97;ReadPosRankSum=2.928;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:13:40:40,0,284 0/1:9,2:12:19:19,0,217 0/1:8,2:10:1:1,0,201 0/1:3,2:5:19:19,0,29 +chr16 30734132 . G A 114.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.701;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.1989;MLEAC=2;MLEAF=0.250;MQ=31.38;MQ0=0;MQRankSum=-2.206;QD=2.21;ReadPosRankSum=0.265;SB=-4.066e-01 GT:AD:DP:GQ:PL 0/0:18,2:20:11:0,11,426 0/1:21,4:25:66:66,0,486 0/1:22,5:27:88:88,0,501 0/0:28,2:30:1:0,1,509 +chr16 30779520 rs142220777 G A 40.09 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.644;DB;DP=144;Dels=0.00;FS=122.478;HaplotypeScore=8.2398;MLEAC=1;MLEAF=0.125;MQ=26.76;MQ0=0;MQRankSum=-2.349;QD=1.05;ReadPosRankSum=-0.774;SB=-8.134e+00 GT:AD:DP:GQ:PL 0/0:30,2:32:50:0,50,855 0/0:30,2:32:44:0,44,701 0/1:31,7:38:76:76,0,771 0/0:38,4:42:11:0,11,649 +chr16 30780994 rs113205969 C T 47.04 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.19;MQ0=0;MQRankSum=1.026;QD=11.76;ReadPosRankSum=-1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:19:77,0,19 ./. ./. ./. +chr16 30795787 . G A 49.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.169;DP=44;Dels=0.00;FS=12.127;HaplotypeScore=5.7505;MLEAC=3;MLEAF=0.375;MQ=24.38;MQ0=0;MQRankSum=-0.169;QD=1.47;ReadPosRankSum=-1.086;SB=7.44 GT:AD:DP:GQ:PL 0/0:9,0:10:18:0,18,183 0/1:11,3:15:26:26,0,111 0/1:8,2:11:48:48,0,110 0/1:7,1:8:19:19,0,79 +chr16 30833425 rs4889510 G C 86.76 . AC=4;AF=1.00;AN=4;DB;DP=12;Dels=0.00;FS=3.332;HaplotypeScore=0.4973;MLEAC=4;MLEAF=1.00;MQ=17.81;MQ0=0;QD=14.46;SB=-3.355e+01 GT:AD:DP:GQ:PL 1/1:0,1:1:3:30,3,0 ./. 1/1:2,3:5:9:91,9,0 ./. +chr16 30899249 . G T 136.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.155;DP=172;Dels=0.00;FS=16.258;HaplotypeScore=7.6437;MLEAC=2;MLEAF=0.250;MQ=31.95;MQ0=0;MQRankSum=-3.399;QD=1.48;ReadPosRankSum=-0.080;SB=0.812 GT:AD:DP:GQ:PL 0/0:38,1:39:51:0,51,851 0/1:39,6:45:58:58,0,906 0/0:39,2:41:26:0,26,874 0/1:39,8:47:99:120,0,881 +chr16 30900325 . C A 41.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.026;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=3.3469;MLEAC=2;MLEAF=0.250;MQ=30.64;MQ0=0;MQRankSum=-0.056;QD=0.88;ReadPosRankSum=-0.295;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,3:24:31:31,0,529 0/0:29,1:30:40:0,40,773 0/0:28,2:30:4:0,4,625 0/1:18,4:22:51:51,0,253 +chr16 30939873 . T G 64.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.686;DP=37;Dels=0.03;FS=6.306;HaplotypeScore=8.2074;MLEAC=3;MLEAF=0.375;MQ=18.91;MQ0=0;MQRankSum=-0.199;QD=2.00;ReadPosRankSum=1.041;SB=2.34 GT:AD:DP:GQ:PL 0/0:4,1:5:3:0,3,36 0/1:7,5:12:67:67,0,73 0/1:5,3:8:22:22,0,34 0/1:8,3:11:16:16,0,47 +chr16 30997972 . C A 121.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.443;DP=79;Dels=0.01;FS=25.441;HaplotypeScore=5.3300;MLEAC=3;MLEAF=0.375;MQ=31.25;MQ0=0;MQRankSum=-2.853;QD=2.00;ReadPosRankSum=1.057;SB=0.265 GT:AD:DP:GQ:PL 0/1:17,4:21:72:72,0,270 0/0:17,1:18:24:0,24,255 0/1:21,2:23:25:25,0,421 0/1:12,3:16:68:68,0,70 +chr16 31049305 . C G 244.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.685;DP=189;Dels=0.00;FS=98.836;HaplotypeScore=3.2139;MLEAC=3;MLEAF=0.375;MQ=38.07;MQ0=0;MQRankSum=-4.175;QD=1.88;ReadPosRankSum=0.407;SB=0.773 GT:AD:DP:GQ:PL 0/1:39,8:47:99:148,0,1127 0/1:39,5:44:89:89,0,934 0/0:56,3:59:29:0,29,1546 0/1:35,4:39:51:51,0,940 +chr16 31090920 . C T 56.25 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.621;DP=229;Dels=0.00;FS=63.631;HaplotypeScore=13.8250;MLEAC=2;MLEAF=0.250;MQ=34.01;MQ0=0;MQRankSum=-3.421;QD=0.45;ReadPosRankSum=2.323;SB=-3.681e+00 GT:AD:DP:GQ:PL 0/0:50,3:53:7:0,7,1022 0/1:52,4:59:18:18,0,971 0/1:59,8:67:77:77,0,1142 0/0:44,3:49:1:0,1,869 +chr16 31097476 . A T 36.48 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.554;DP=77;Dels=0.00;FS=28.402;HaplotypeScore=10.4057;MLEAC=4;MLEAF=0.500;MQ=27.72;MQ0=0;MQRankSum=-4.456;QD=0.47;ReadPosRankSum=1.793;SB=-6.827e-01 GT:AD:DP:GQ:PL 0/1:14,3:17:19:19,0,378 0/1:19,4:23:25:25,0,446 0/1:15,4:19:28:28,0,222 0/1:11,7:18:6:6,0,170 +chr16 31098895 . C G 117.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.285;DP=55;Dels=0.02;FS=7.618;HaplotypeScore=3.2861;MLEAC=3;MLEAF=0.375;MQ=27.01;MQ0=0;MQRankSum=0.710;QD=2.87;ReadPosRankSum=-1.123;SB=0.629 GT:AD:DP:GQ:PL 0/1:11,1:12:10:10,0,190 0/1:11,2:13:30:30,0,221 0/1:10,5:15:99:119,0,215 0/0:13,1:14:5:0,5,288 +chr16 31142271 rs17855606 A G 43.27 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.254;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=27.76;MQ0=0;MQRankSum=-0.254;QD=4.33;ReadPosRankSum=-0.592;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:57:57,0,93 0/0:4,0:4:6:0,6,81 0/1:4,1:5:24:24,0,30 ./. +chr16 31341457 . T A 212.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.024;DP=151;Dels=0.00;FS=6.471;HaplotypeScore=0.4992;MLEAC=3;MLEAF=0.375;MQ=31.91;MQ0=0;MQRankSum=-0.848;QD=1.85;ReadPosRankSum=-1.317;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/0:35,1:36:57:0,57,633 0/1:33,6:39:99:132,0,528 0/1:35,3:38:44:44,0,504 0/1:33,5:38:80:80,0,612 +chr16 31384679 . G T 42.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.452;DP=111;Dels=0.01;FS=23.009;HaplotypeScore=13.3973;MLEAC=1;MLEAF=0.125;MQ=28.81;MQ0=0;MQRankSum=-0.496;QD=1.62;ReadPosRankSum=-0.027;SB=-5.225e+00 GT:AD:DP:GQ:PL 0/1:22,4:26:78:78,0,313 0/0:26,0:26:45:0,45,470 0/0:29,2:31:9:0,9,635 0/0:27,0:27:39:0,39,417 +chr16 31424569 . T G 71.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.373;DP=117;Dels=0.03;FS=0.000;HaplotypeScore=4.6147;MLEAC=3;MLEAF=0.375;MQ=31.97;MQ0=0;MQRankSum=-4.341;QD=1.00;ReadPosRankSum=-0.005;SB=-3.829e-02 GT:AD:DP:GQ:PL 0/1:20,3:23:25:25,0,655 0/1:24,3:27:1:1,0,492 0/0:44,1:45:99:0,108,1355 0/1:11,7:18:85:85,0,166 +chr16 31427530 . G T 42.10 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.228;DP=28;Dels=0.00;FS=6.397;HaplotypeScore=1.7000;MLEAC=2;MLEAF=0.250;MQ=30.00;MQ0=0;MQRankSum=0.137;QD=3.01;ReadPosRankSum=-0.867;SB=1.50 GT:AD:DP:GQ:PL 0/0:7,0:7:12:0,12,130 0/0:7,0:7:9:0,9,108 0/1:7,2:9:53:53,0,167 0/1:4,1:5:30:30,0,41 +chr16 31499034 . T G 58.91 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.474;DP=40;Dels=0.00;FS=38.065;HaplotypeScore=4.0817;MLEAC=2;MLEAF=0.250;MQ=31.79;MQ0=0;MQRankSum=-1.513;QD=3.27;ReadPosRankSum=-0.565;SB=-3.391e+00 GT:AD:DP:GQ:PL 0/0:11,1:12:18:0,18,208 0/1:9,2:11:17:17,0,184 0/0:10,0:10:21:0,21,247 0/1:4,3:7:83:83,0,100 +chr16 32447422 . A T 88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.999;DP=156;Dels=0.01;FS=44.394;HaplotypeScore=6.1240;MLEAC=3;MLEAF=0.375;MQ=15.24;MQ0=0;MQRankSum=0.194;QD=0.79;ReadPosRankSum=1.554;SB=1.38 GT:AD:DP:GQ:PL 0/1:37,6:44:73:73,0,73 0/1:32,3:36:7:7,0,156 0/0:43,1:45:18:0,18,193 0/1:25,5:30:50:50,0,97 +chr16 32486821 . T G 55.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.362;DP=28;Dels=0.00;FS=16.949;HaplotypeScore=1.2132;MLEAC=2;MLEAF=0.250;MQ=19.96;MQ0=0;MQRankSum=-0.333;QD=3.67;ReadPosRankSum=0.091;SB=-4.372e-01 GT:AD:DP:GQ:PL 0/1:3,4:7:12:72,0,12 0/0:3,1:4:6:0,6,62 0/1:7,1:8:23:23,0,69 0/0:8,1:9:6:0,6,56 +chr16 32489447 rs13330343 G A 205.09 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.970;DB;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.8276;MLEAC=5;MLEAF=0.625;MQ=8.95;MQ0=0;MQRankSum=4.075;QD=1.41;ReadPosRankSum=-0.297;SB=-6.608e+01 GT:AD:DP:GQ:PL 1/1:33,15:48:15:184,15,0 0/0:35,0:35:6:0,6,51 1/1:40,16:56:3:32,3,0 0/1:37,4:41:35:35,0,66 +chr16 32489635 . G A 35.31 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.189;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7807;MLEAC=4;MLEAF=0.667;MQ=9.33;MQ0=0;MQRankSum=2.943;QD=0.75;ReadPosRankSum=3.099;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,1:13:22:22,0,31 ./. 1/1:16,2:18:3:28,3,0 0/1:15,1:16:24:24,0,45 +chr16 33391365 . G A 32.43 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.350;DP=52;Dels=0.00;FS=12.179;HaplotypeScore=0.7419;MLEAC=3;MLEAF=0.375;MQ=18.60;MQ0=0;MQRankSum=1.677;QD=0.90;ReadPosRankSum=3.108;SB=-1.341e+00 GT:AD:DP:GQ:PL 0/1:13,1:14:12:12,0,125 0/1:6,2:10:32:45,0,32 0/1:11,1:12:17:17,0,23 0/0:15,1:16:6:0,6,55 +chr16 33414143 rs55927096 C T 139.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.658;DB;DP=129;Dels=0.00;FS=28.305;HaplotypeScore=2.6471;MLEAC=4;MLEAF=0.500;MQ=14.25;MQ0=0;MQRankSum=-1.518;QD=1.08;ReadPosRankSum=1.052;SB=-1.709e-02 GT:AD:DP:GQ:PL 0/1:17,19:36:26:26,0,70 0/1:24,4:28:35:35,0,140 0/1:23,11:34:72:91,0,72 0/1:19,12:31:30:30,0,84 +chr16 33500162 . T A 47.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.012;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.2425;MLEAC=3;MLEAF=0.375;MQ=16.45;MQ0=0;MQRankSum=2.272;QD=0.67;ReadPosRankSum=-2.537;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,0:26:3:0,3,42 0/1:28,2:30:22:22,0,115 0/1:28,1:29:23:23,0,167 0/1:10,2:12:25:44,0,25 +chr16 33524774 rs28589675 G A 102.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.016;DB;DP=158;Dels=0.00;FS=0.749;HaplotypeScore=1.3500;MLEAC=3;MLEAF=0.375;MQ=9.83;MQ0=0;MQRankSum=1.208;QD=0.84;ReadPosRankSum=0.160;SB=-5.902e+01 GT:AD:DP:GQ:PL 0/1:24,11:35:80:86,0,80 0/0:36,0:36:6:0,6,56 0/1:36,11:47:23:23,0,81 0/1:31,9:40:36:36,0,68 +chr16 33736611 . T G 79.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.318;DP=27;Dels=0.00;FS=13.554;HaplotypeScore=0.9929;MLEAC=2;MLEAF=0.250;MQ=21.89;MQ0=0;MQRankSum=1.423;QD=7.99;ReadPosRankSum=0.264;SB=23.92 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,28 0/1:2,1:3:18:18,0,18 1/1:2,4:7:12:107,12,0 0/0:12,0:12:9:0,9,88 +chr16 33736737 rs2519367 C T 129.03 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.570;DB;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=18.68;MQ0=0;MQRankSum=2.105;QD=6.79;ReadPosRankSum=3.174;SB=2.20 GT:AD:DP:GQ:PL ./. 0/0:4,0:4:3:0,3,32 0/1:3,3:6:54:91,0,54 0/1:9,4:13:66:75,0,66 +chr16 33956725 rs77770048 T C 249.16 . AC=6;AF=1.00;AN=6;BaseQRankSum=-0.522;DB;DP=20;Dels=0.00;FS=8.016;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=17.27;MQ0=0;MQRankSum=2.012;QD=14.66;ReadPosRankSum=0.373;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,6:6:15:140,15,0 1/1:2,2:4:3:28,3,0 1/1:0,7:7:15:118,15,0 ./. +chr16 33957191 rs62027915 T C 30.40 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.159;DB;DP=21;Dels=0.00;FS=6.690;HaplotypeScore=0.6399;MLEAC=4;MLEAF=0.667;MQ=13.21;MQ0=0;MQRankSum=-1.738;QD=3.38;ReadPosRankSum=1.448;SB=25.81 GT:AD:DP:GQ:PL 1/1:1,3:5:6:45,6,0 1/1:0,4:4:3:24,3,0 0/0:4,4:8:3:0,3,25 ./. +chr16 33957467 . A G 68.77 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.813;DP=31;Dels=0.03;FS=21.553;HaplotypeScore=6.8958;MLEAC=4;MLEAF=1.00;MQ=16.73;MQ0=0;MQRankSum=1.813;QD=4.05;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:6,4:10:9:79,9,0 ./. 1/1:4,2:6:3:24,3,0 ./. +chr16 33965591 rs76771321 A C 70.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.247;DB;DP=160;Dels=0.03;FS=24.423;HaplotypeScore=46.2894;MLEAC=3;MLEAF=0.375;MQ=23.87;MQ0=0;MQRankSum=-3.329;QD=0.56;ReadPosRankSum=0.849;SB=-1.813e+00 GT:AD:DP:GQ:PL 0/1:32,9:41:2:2,0,497 0/1:35,9:44:56:56,0,526 0/0:27,6:33:23:0,23,471 0/1:32,6:38:53:53,0,434 +chr16 34441739 rs34514136 T C 33.05 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.125;DB;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=1.6813;MLEAC=1;MLEAF=0.125;MQ=31.15;MQ0=0;MQRankSum=0.098;QD=4.13;ReadPosRankSum=1.732;SB=-1.153e-02 GT:AD:DP:GQ:PL 0/1:5,2:7:69:69,0,71 0/0:15,0:15:15:0,15,179 0/0:13,0:13:36:0,36,466 0/0:6,0:6:18:0,18,254 +chr16 34442677 rs6420379 T C 41.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=9;Dels=0.00;FS=4.771;HaplotypeScore=1.2868;MLEAC=4;MLEAF=1.00;MQ=16.03;MQ0=0;MQRankSum=1.026;QD=5.86;ReadPosRankSum=1.026;SB=-3.300e+01 GT:AD:DP:GQ:PL ./. 1/1:2,1:4:3:36,3,0 ./. 1/1:2,1:3:3:38,3,0 +chr16 34826283 rs72814815 G A 37.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=0;MQRankSum=0.736;QD=9.44;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:69,6,0 ./. ./. ./. +chr16 35142630 . C T 31.96 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.367;DP=83;Dels=0.00;FS=27.938;HaplotypeScore=3.5793;MLEAC=2;MLEAF=0.250;MQ=25.27;MQ0=0;MQRankSum=0.465;QD=0.80;ReadPosRankSum=0.568;SB=-2.843e+00 GT:AD:DP:GQ:PL 0/0:16,0:16:39:0,39,474 0/1:15,3:18:64:64,0,149 0/0:26,1:27:13:0,13,343 0/1:20,2:22:7:7,0,208 +chr16 46642286 rs34559393 G A 131.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.482;DB;DP=54;Dels=0.00;FS=2.420;HaplotypeScore=0.9932;MLEAC=1;MLEAF=0.125;MQ=34.30;MQ0=0;MQRankSum=-1.706;QD=6.24;ReadPosRankSum=0.671;SB=-6.453e-03 GT:AD:DP:GQ:PL 0/0:13,0:13:33:0,33,382 0/1:14,7:21:99:167,0,370 0/0:16,0:16:36:0,36,464 0/0:4,0:4:12:0,12,163 +chr16 46843487 . A C 603.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.713;DP=167;Dels=0.01;FS=0.000;HaplotypeScore=7.2954;MLEAC=4;MLEAF=0.500;MQ=30.53;MQ0=0;MQRankSum=-2.161;QD=3.61;ReadPosRankSum=3.057;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:41,9:50:99:111,0,810 0/1:42,6:48:54:54,0,662 0/1:37,16:54:99:350,0,741 0/1:8,5:13:99:131,0,108 +chr16 47699912 . C A 187.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.737;DP=114;Dels=0.01;FS=12.288;HaplotypeScore=3.6052;MLEAC=4;MLEAF=0.500;MQ=34.79;MQ0=0;MQRankSum=-1.169;QD=1.65;ReadPosRankSum=0.891;SB=-1.329e-02 GT:AD:DP:GQ:PL 0/1:26,3:29:42:42,0,428 0/1:26,3:29:34:34,0,500 0/1:32,5:37:90:90,0,605 0/1:15,3:18:64:64,0,193 +chr16 48155779 . A G 426.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.017;DP=144;Dels=0.00;FS=30.066;HaplotypeScore=1.7258;MLEAC=4;MLEAF=0.500;MQ=34.01;MQ0=0;MQRankSum=-1.906;QD=2.96;ReadPosRankSum=0.150;SB=-1.185e-02 GT:AD:DP:GQ:PL 0/1:27,4:31:56:56,0,591 0/1:28,5:33:55:55,0,691 0/1:43,5:48:56:56,0,848 0/1:20,12:32:99:302,0,350 +chr16 48174559 rs16945869 G A 1340.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.405;DB;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.2499;MLEAC=3;MLEAF=0.375;MQ=38.23;MQ0=0;MQRankSum=-3.764;QD=12.65;ReadPosRankSum=0.227;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,17:33:99:581,0,507 0/0:41,0:41:99:0,123,1590 0/1:24,11:35:99:333,0,705 0/1:23,15:38:99:470,0,821 +chr16 48249999 . A T 803.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.414;DP=240;Dels=0.01;FS=81.194;HaplotypeScore=6.6218;MLEAC=4;MLEAF=0.500;MQ=34.81;MQ0=0;MQRankSum=-6.518;QD=3.35;ReadPosRankSum=2.362;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:44,13:57:99:270,0,1074 0/1:51,15:67:99:257,0,1388 0/1:50,10:60:99:169,0,1338 0/1:44,10:54:99:150,0,995 +chr16 48311248 . G C 70.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.464;DP=153;Dels=0.00;FS=66.949;HaplotypeScore=2.4849;MLEAC=1;MLEAF=0.125;MQ=39.73;MQ0=0;MQRankSum=-3.877;QD=1.73;ReadPosRankSum=-2.354;SB=-6.311e+00 GT:AD:DP:GQ:PL 0/1:34,7:41:99:107,0,1124 0/0:33,1:34:64:0,64,1110 0/0:37,0:37:93:0,93,1256 0/0:39,2:41:39:0,39,1237 +chr16 48382130 . T G 115.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.159;DP=242;Dels=0.01;FS=118.009;HaplotypeScore=14.7686;MLEAC=3;MLEAF=0.375;MQ=33.07;MQ0=0;MQRankSum=-4.389;QD=0.57;ReadPosRankSum=3.125;SB=1.27 GT:AD:DP:GQ:PL 0/1:53,7:60:79:79,0,1046 0/1:53,10:63:58:58,0,1186 0/1:73,7:80:22:22,0,1549 0/0:34,3:37:28:0,28,541 +chr16 49552157 . T A 38.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.754;DP=25;Dels=0.00;FS=6.410;HaplotypeScore=1.6028;MLEAC=2;MLEAF=0.250;MQ=28.08;MQ0=0;MQRankSum=1.457;QD=3.20;ReadPosRankSum=0.452;SB=1.44 GT:AD:DP:GQ:PL 0/0:5,0:5:9:0,9,70 0/0:8,0:8:15:0,15,128 0/1:7,2:9:48:50,0,48 1/1:2,1:3:3:31,3,0 +chr16 49552356 . T G 75.29 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.354;DP=18;Dels=0.00;FS=10.710;HaplotypeScore=0.8001;MLEAC=3;MLEAF=0.500;MQ=23.56;MQ0=0;MQRankSum=1.344;QD=4.43;ReadPosRankSum=-1.344;SB=-5.788e-03 GT:AD:DP:GQ:PL 0/1:6,1:7:25:25,0,26 0/1:5,2:7:48:62,0,48 0/1:2,1:3:27:27,0,37 ./. +chr16 49670535 . T A 44.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.214;DP=54;Dels=0.02;FS=10.915;HaplotypeScore=12.0226;MLEAC=3;MLEAF=0.375;MQ=26.59;MQ0=0;MQRankSum=-0.427;QD=1.18;ReadPosRankSum=0.641;SB=0.172 GT:AD:DP:GQ:PL 0/1:8,2:10:8:8,0,164 0/1:16,2:18:41:41,0,164 0/1:7,2:9:38:38,0,154 0/0:15,1:16:15:0,15,169 +chr16 49764948 rs2292155 C T 361.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.203;DB;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.4991;MLEAC=1;MLEAF=0.125;MQ=37.12;MQ0=0;MQRankSum=-2.596;QD=10.06;ReadPosRankSum=1.792;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:33,0:33:87:0,87,1175 0/1:22,14:36:99:398,0,677 0/0:36,0:36:93:0,93,1181 0/0:34,0:34:81:0,81,1005 +chr16 50344561 . G T 32.65 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.388;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.4555;MLEAC=3;MLEAF=0.375;MQ=31.59;MQ0=0;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-1.341;SB=0.169 GT:AD:DP:GQ:PL 0/1:13,1:14:12:12,0,156 0/1:9,1:10:14:14,0,162 0/0:21,1:22:14:0,14,428 0/1:15,2:17:49:49,0,204 +chr16 50348409 rs9926131 A T 932.65 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.402;DB;DP=50;Dels=0.04;FS=11.946;HaplotypeScore=1.9762;MLEAC=7;MLEAF=0.875;MQ=28.71;MQ0=0;MQRankSum=1.516;QD=18.65;ReadPosRankSum=0.429;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,10:13:30:352,30,0 0/1:7,6:13:99:167,0,167 1/1:3,7:11:15:178,15,0 1/1:1,8:11:24:280,24,0 +chr16 51174646 . A T 592.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.741;DP=156;Dels=0.00;FS=166.431;HaplotypeScore=17.9815;MLEAC=4;MLEAF=0.500;MQ=25.07;MQ0=0;MQRankSum=0.527;QD=3.80;ReadPosRankSum=3.810;SB=-1.218e+00 GT:AD:DP:GQ:PL 0/1:24,10:34:99:199,0,349 0/1:33,7:40:64:64,0,348 0/1:34,11:45:99:149,0,481 0/1:25,12:37:99:223,0,264 +chr16 51383815 rs2111542 A G 151.14 . AC=6;AF=1.00;AN=6;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=25.78;MQ0=0;QD=25.19;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:35,3,0 ./. 1/1:0,2:2:6:73,6,0 1/1:0,3:3:6:79,6,0 +chr16 52479771 rs2075236 A T 515.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.187;DB;DP=103;Dels=0.03;FS=0.000;HaplotypeScore=0.9748;MLEAC=3;MLEAF=0.375;MQ=35.28;MQ0=0;MQRankSum=-2.889;QD=8.19;ReadPosRankSum=1.312;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,120,1536 0/1:17,10:27:99:289,0,451 0/1:19,8:27:99:213,0,642 0/1:4,2:6:57:57,0,115 +chr16 52689148 . G A 291.61 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.095;DP=50;Dels=0.02;FS=25.250;HaplotypeScore=3.8410;MLEAC=6;MLEAF=0.750;MQ=17.90;MQ0=0;MQRankSum=4.182;QD=5.83;ReadPosRankSum=0.068;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:21:28,0,21 1/1:8,7:15:18:175,18,0 1/1:12,4:16:9:78,9,0 0/1:9,3:12:19:56,0,19 +chr16 53289788 . C T 223.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.168;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=6.0478;MLEAC=4;MLEAF=0.500;MQ=34.83;MQ0=0;MQRankSum=-4.586;QD=1.68;ReadPosRankSum=3.241;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:36,3:40:13:13,0,811 0/1:37,5:42:31:31,0,796 0/1:33,6:39:96:96,0,553 0/1:5,5:10:99:126,0,163 +chr16 53321913 . A T 37.06 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.657;DP=150;Dels=0.02;FS=12.721;HaplotypeScore=22.4714;MLEAC=1;MLEAF=0.125;MQ=22.48;MQ0=0;MQRankSum=-2.153;QD=0.81;ReadPosRankSum=-0.496;SB=-4.747e+00 GT:AD:DP:GQ:PL 0/0:35,4:39:9:0,9,285 0/1:40,5:45:71:71,0,244 0/0:38,3:42:3:0,3,193 0/0:18,3:21:0:0,0,178 +chr16 53532552 . T C 162.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.170;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.6790;MLEAC=4;MLEAF=0.500;MQ=30.68;MQ0=0;MQRankSum=-3.759;QD=2.43;ReadPosRankSum=0.284;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:69:69,0,173 0/1:18,4:22:68:68,0,353 0/1:17,2:19:28:28,0,269 0/1:8,2:10:40:40,0,156 +chr16 53720317 . T C 70.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.627;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.2497;MLEAC=3;MLEAF=0.375;MQ=34.20;MQ0=0;MQRankSum=-2.417;QD=1.30;ReadPosRankSum=0.269;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,1:16:3:3,0,307 0/1:10,4:14:76:76,0,85 0/1:21,3:24:31:31,0,338 0/0:4,0:4:6:0,6,77 +chr16 53878255 . A T 113.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.971;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=14.6641;MLEAC=4;MLEAF=0.500;MQ=27.79;MQ0=0;MQRankSum=-3.055;QD=1.52;ReadPosRankSum=2.812;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,5:18:77:77,0,245 0/1:21,3:25:47:47,0,228 0/1:22,3:25:13:13,0,385 0/1:5,2:7:19:19,0,128 +chr16 54318102 rs8050831 C T 877.47 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.269;DB;DP=46;Dels=0.02;FS=8.893;HaplotypeScore=2.3702;MLEAC=8;MLEAF=1.00;MQ=29.53;MQ0=0;MQRankSum=3.094;QD=19.08;ReadPosRankSum=2.976;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,6:8:18:198,18,0 1/1:4,9:13:5:291,5,0 1/1:7,8:15:24:284,24,0 1/1:5,4:9:12:143,12,0 +chr16 54967609 . G T 119.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.821;DP=77;Dels=0.03;FS=19.978;HaplotypeScore=5.9496;MLEAC=4;MLEAF=0.500;MQ=28.33;MQ0=0;MQRankSum=0.917;QD=1.55;ReadPosRankSum=2.726;SB=-4.596e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:41:54,0,41 0/1:17,5:22:31:31,0,91 0/1:18,1:19:16:16,0,76 0/1:15,4:19:61:61,0,136 +chr16 55363238 rs31087 G A 334.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.722;DB;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=11.6801;MLEAC=3;MLEAF=0.375;MQ=31.52;MQ0=0;MQRankSum=1.782;QD=4.72;ReadPosRankSum=-1.314;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:42:0,42,500 0/1:13,6:21:60:209,0,60 0/1:24,4:28:99:99,0,380 0/1:17,3:21:70:70,0,265 +chr16 55562257 rs837549 G A 1429.14 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.664;DB;DP=55;Dels=0.04;FS=17.076;HaplotypeScore=1.1419;MLEAC=8;MLEAF=1.00;MQ=29.20;MQ0=0;MQRankSum=1.664;QD=25.98;ReadPosRankSum=0.577;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,12:14:33:409,33,0 1/1:0,19:19:45:539,45,0 1/1:0,15:15:36:414,36,0 1/1:1,4:5:9:106,9,0 +chr16 55734212 . T C 217.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.331;DP=128;Dels=0.01;FS=4.627;HaplotypeScore=1.9389;MLEAC=4;MLEAF=0.500;MQ=34.70;MQ0=0;MQRankSum=-4.976;QD=1.70;ReadPosRankSum=3.727;SB=-1.239e-02 GT:AD:DP:GQ:PL 0/1:21,3:24:35:35,0,460 0/1:26,6:33:80:80,0,549 0/1:28,5:33:76:76,0,537 0/1:31,6:37:69:69,0,799 +chr16 55801202 rs28567464 C T 1812.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.041;DB;DP=131;Dels=0.00;FS=8.984;HaplotypeScore=0.7282;MLEAC=8;MLEAF=1.00;MQ=22.84;MQ0=0;MQRankSum=1.697;QD=13.84;ReadPosRankSum=1.010;SB=-3.600e+01 GT:AD:DP:GQ:PL 1/1:2,29:31:42:547,42,0 1/1:6,26:32:30:381,30,0 1/1:2,32:34:33:436,33,0 1/1:6,28:34:21:488,21,0 +chr16 55854455 rs2307235 A C 36 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.013;DB;DP=77;Dels=0.03;FS=0.000;HaplotypeScore=5.8112;MLEAC=3;MLEAF=0.375;MQ=15.70;MQ0=0;MQRankSum=0.792;QD=0.61;ReadPosRankSum=0.425;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,2:22:17:17,0,33 0/1:11,3:14:18:23,0,18 0/0:17,1:18:3:0,3,37 0/1:18,3:21:37:37,0,109 +chr16 55862691 rs62028647 G A 304.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.842;DB;DP=173;Dels=0.00;FS=0.783;HaplotypeScore=1.9903;MLEAC=4;MLEAF=0.500;MQ=16.06;MQ0=0;MQRankSum=1.867;QD=1.76;ReadPosRankSum=2.013;SB=-1.710e+02 GT:AD:DP:GQ:PL 0/1:27,8:35:57:57,0,112 0/1:34,14:48:99:141,0,257 0/1:35,9:44:89:89,0,186 0/1:40,6:46:60:60,0,222 +chr16 56362725 rs2241952 T C 2709.28 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.033;DB;DP=87;Dels=0.00;FS=35.499;HaplotypeScore=1.2196;MLEAC=8;MLEAF=1.00;MQ=34.16;MQ0=0;MQRankSum=2.688;QD=31.14;ReadPosRankSum=2.688;SB=-6.530e+01 GT:AD:DP:GQ:PL 1/1:3,17:20:51:640,51,0 1/1:3,16:19:48:585,48,0 1/1:2,17:19:51:675,51,0 1/1:4,25:29:6:848,6,0 +chr16 56396505 . A T 32.78 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.962;DP=104;Dels=0.02;FS=57.724;HaplotypeScore=25.6454;MLEAC=3;MLEAF=0.375;MQ=28.28;MQ0=0;MQRankSum=-2.869;QD=0.40;ReadPosRankSum=1.420;SB=0.216 GT:AD:DP:GQ:PL 0/1:26,3:29:10:10,0,412 0/1:18,5:23:36:36,0,328 0/1:27,3:30:29:29,0,388 0/0:18,2:20:11:0,11,325 +chr16 56403260 . A T 35.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.993;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.4925;MLEAC=2;MLEAF=0.250;MQ=40.38;MQ0=0;MQRankSum=-3.297;QD=0.85;ReadPosRankSum=-0.219;SB=-7.771e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:45:0,45,628 0/1:22,3:25:23:23,0,718 0/0:24,0:24:60:0,60,784 0/1:14,3:17:54:54,0,479 +chr16 56435672 rs150798359 T A 868.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.979;DB;DP=205;Dels=0.00;FS=187.915;HaplotypeScore=6.1524;MLEAC=4;MLEAF=0.500;MQ=37.39;MQ0=0;MQRankSum=-3.104;QD=4.24;ReadPosRankSum=1.825;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:36,14:50:99:367,0,1187 0/1:43,9:52:99:207,0,1187 0/1:46,10:56:99:218,0,1403 0/1:40,7:47:99:119,0,1090 +chr16 56501238 . A C 49.25 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.420;DP=170;Dels=0.00;FS=2.177;HaplotypeScore=6.0473;MLEAC=1;MLEAF=0.125;MQ=31.60;MQ0=0;MQRankSum=-4.508;QD=1.17;ReadPosRankSum=-0.326;SB=0.538 GT:AD:DP:GQ:PL 0/0:43,2:45:61:0,61,991 0/1:35,7:42:85:85,0,889 0/0:45,5:50:9:0,9,1089 0/0:28,5:33:11:0,11,592 +chr16 56597350 rs282232 G A 64.03 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.231;DB;DP=10;Dels=0.00;FS=3.680;HaplotypeScore=0.3325;MLEAC=3;MLEAF=0.750;MQ=19.31;MQ0=0;MQRankSum=1.231;QD=10.67;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,1:3:23:30,0,23 ./. ./. 1/1:1,2:3:6:70,6,0 +chr16 56623872 . T G 160.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.475;DP=53;Dels=0.00;FS=9.746;HaplotypeScore=3.4504;MLEAC=3;MLEAF=0.375;MQ=22.87;MQ0=0;MQRankSum=-3.330;QD=3.56;ReadPosRankSum=3.639;SB=0.282 GT:AD:DP:GQ:PL 0/1:8,5:13:59:59,0,82 0/0:5,3:8:12:0,12,130 0/1:12,5:17:75:75,0,172 0/1:8,7:15:69:69,0,103 +chr16 56670755 . C T 124.46 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.972;DP=201;Dels=0.00;FS=123.790;HaplotypeScore=1.8222;MLEAC=3;MLEAF=0.375;MQ=14.53;MQ0=0;MQRankSum=3.813;QD=0.82;ReadPosRankSum=-0.082;SB=1.42 GT:AD:DP:GQ:PL 0/1:40,5:45:40:40,0,60 0/1:52,7:59:99:107,0,133 0/0:50,0:50:9:0,9,106 0/1:46,1:47:20:20,0,55 +chr16 56704753 . G A 85.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.052;DP=96;Dels=0.02;FS=0.000;HaplotypeScore=19.2710;MLEAC=2;MLEAF=0.250;MQ=21.66;MQ0=0;MQRankSum=1.342;QD=1.77;ReadPosRankSum=-0.649;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,2:27:40:40,0,79 0/0:25,2:27:8:0,8,258 0/0:19,1:20:21:0,21,213 0/1:15,5:20:86:86,0,119 +chr16 56711010 . C A 31.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.751;DP=93;Dels=0.01;FS=3.093;HaplotypeScore=9.2090;MLEAC=3;MLEAF=0.375;MQ=18.33;MQ0=0;MQRankSum=-0.203;QD=0.42;ReadPosRankSum=-1.033;SB=-1.425e+00 GT:AD:DP:GQ:PL 0/1:24,3:27:33:33,0,235 0/1:20,4:24:36:36,0,86 0/0:14,2:16:15:0,15,144 0/1:23,2:25:4:4,0,170 +chr16 56832364 . G A 33.59 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.684;DP=55;Dels=0.04;FS=0.000;HaplotypeScore=6.8886;MLEAC=5;MLEAF=0.625;MQ=16.44;MQ0=0;MQRankSum=1.505;QD=0.61;ReadPosRankSum=0.465;SB=0.900 GT:AD:DP:GQ:PL 0/1:12,3:17:11:11,0,59 1/1:16,3:19:3:24,3,0 0/1:10,1:12:17:17,0,17 1/1:1,4:5:3:23,3,0 +chr16 56899006 rs4784733 C T 80.98 . AC=2;AF=1.00;AN=2;DB;DP=5;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=0;QD=26.99;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,3:3:9:113,9,0 ./. +chr16 57046956 . G A 35.35 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.406;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=31.96;MQ0=0;MQRankSum=-0.406;QD=5.05;ReadPosRankSum=-0.988;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,1:3:21:21,0,75 0/1:2,1:3:19:27,0,19 ./. 1/1:0,1:1:3:26,3,0 +chr16 57071232 rs1684580 C G 488.86 . AC=7;AF=0.875;AN=8;BaseQRankSum=4.436;DB;DP=51;Dels=0.00;FS=5.427;HaplotypeScore=5.0705;MLEAC=7;MLEAF=0.875;MQ=21.57;MQ0=0;MQRankSum=2.914;QD=9.59;ReadPosRankSum=0.367;SB=-3.100e+01 GT:AD:DP:GQ:PL 0/1:11,2:13:25:25,0,78 1/1:3,3:6:3:39,3,0 1/1:2,9:11:18:192,18,0 1/1:7,13:21:24:276,24,0 +chr16 57074484 . G C 125.82 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.000;DP=40;Dels=0.00;FS=3.522;HaplotypeScore=12.2309;MLEAC=5;MLEAF=0.625;MQ=19.47;MQ0=0;MQRankSum=0.171;QD=4.06;ReadPosRankSum=0.415;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,4:8:6:69,6,0 0/0:6,3:9:6:0,6,61 1/1:7,3:10:3:23,3,0 0/1:8,5:13:15:78,0,15 +chr16 57080502 . C A 30.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.320;DP=151;Dels=0.00;FS=31.337;HaplotypeScore=9.6392;MLEAC=2;MLEAF=0.250;MQ=34.40;MQ0=0;MQRankSum=-2.726;QD=0.41;ReadPosRankSum=-1.432;SB=-9.768e-02 GT:AD:DP:GQ:PL 0/1:32,3:35:23:23,0,827 0/1:35,4:39:49:49,0,521 0/0:45,2:47:53:0,53,1169 0/0:28,2:30:22:0,22,660 +chr16 57113014 . C G 30.06 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.702;DP=89;Dels=0.00;FS=25.702;HaplotypeScore=5.2518;MLEAC=2;MLEAF=0.250;MQ=28.88;MQ0=0;MQRankSum=-1.969;QD=0.75;ReadPosRankSum=1.648;SB=-3.292e+00 GT:AD:DP:GQ:PL 0/1:18,2:20:16:16,0,253 0/0:30,1:31:54:0,54,612 0/1:16,4:20:53:53,0,317 0/0:16,2:18:0:0,0,226 +chr16 57149318 rs142941150 G A 815.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.824;DB;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2054;MLEAC=3;MLEAF=0.375;MQ=33.55;MQ0=0;MQRankSum=2.086;QD=11.33;ReadPosRankSum=0.525;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,13:22:87:447,0,87 0/0:27,0:27:63:0,63,692 0/1:18,7:25:99:224,0,335 0/1:19,6:25:99:188,0,252 +chr16 57261298 . T C 81 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.887;DP=68;Dels=0.04;FS=7.954;HaplotypeScore=20.7548;MLEAC=3;MLEAF=0.375;MQ=25.09;MQ0=0;MQRankSum=-0.226;QD=1.69;ReadPosRankSum=2.104;SB=0.453 GT:AD:DP:GQ:PL 0/1:12,2:15:49:49,0,81 0/1:8,3:11:17:17,0,60 0/1:16,3:19:40:58,0,40 0/0:20,0:20:18:0,18,210 +chr16 57466286 . A C 303.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.918;DP=72;Dels=0.03;FS=0.000;HaplotypeScore=8.5358;MLEAC=4;MLEAF=0.500;MQ=30.10;MQ0=0;MQRankSum=-0.817;QD=4.22;ReadPosRankSum=1.842;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:83:96,0,83 0/1:14,4:20:98:98,0,104 0/1:15,1:16:20:20,0,22 0/1:12,5:17:32:132,0,32 +chr16 57466432 . G T 133.51 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.407;DP=130;Dels=0.00;FS=22.829;HaplotypeScore=6.1809;MLEAC=4;MLEAF=0.500;MQ=21.13;MQ0=0;MQRankSum=2.606;QD=1.03;ReadPosRankSum=-2.000;SB=-3.486e+00 GT:AD:DP:GQ:PL 0/1:30,3:33:63:63,0,91 0/1:35,1:36:1:1,0,217 0/1:34,1:35:1:1,0,281 0/1:21,5:26:99:106,0,165 +chr16 57609399 . A G 79.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.671;DP=76;Dels=0.01;FS=51.404;HaplotypeScore=4.0351;MLEAC=4;MLEAF=0.500;MQ=30.59;MQ0=0;MQRankSum=-2.381;QD=1.04;ReadPosRankSum=0.552;SB=-4.320e-01 GT:AD:DP:GQ:PL 0/1:15,2:17:30:30,0,304 0/1:16,2:18:9:9,0,339 0/1:18,3:21:30:30,0,457 0/1:15,4:19:52:52,0,274 +chr16 57625628 . A C 169.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.133;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4746;MLEAC=2;MLEAF=0.250;MQ=35.23;MQ0=0;MQRankSum=-0.786;QD=3.46;ReadPosRankSum=-0.319;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,3:28:30:30,0,597 0/0:25,0:25:51:0,51,593 0/0:21,0:21:45:0,45,568 0/1:14,7:21:99:181,0,296 +chr16 57688006 . A C 33.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.756;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.8450;MLEAC=2;MLEAF=0.250;MQ=32.20;MQ0=0;MQRankSum=-3.989;QD=0.89;ReadPosRankSum=2.069;SB=-4.686e-01 GT:AD:DP:GQ:PL 0/1:16,2:18:31:31,0,281 0/0:16,1:18:12:0,12,425 0/0:22,4:26:1:0,1,461 0/1:14,6:20:42:42,0,263 +chr16 57764794 . G C 30.71 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.359;DP=120;Dels=0.00;FS=6.924;HaplotypeScore=4.1648;MLEAC=2;MLEAF=0.250;MQ=32.42;MQ0=0;MQRankSum=-2.553;QD=0.54;ReadPosRankSum=0.045;SB=-8.717e-02 GT:AD:DP:GQ:PL 0/0:25,1:26:28:0,28,604 0/1:22,3:25:20:20,0,458 0/0:36,1:37:44:0,44,788 0/1:28,4:32:52:52,0,574 +chr16 57795394 rs2967172 G A 2619.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.433;DB;DP=115;Dels=0.01;FS=61.554;HaplotypeScore=10.9812;MLEAC=4;MLEAF=0.500;MQ=36.06;MQ0=0;MQRankSum=2.386;QD=22.78;ReadPosRankSum=1.781;SB=-2.633e+02 GT:AD:DP:GQ:PL 0/1:9,17:26:64:540,0,64 0/1:9,21:30:76:717,0,76 0/1:8,19:27:25:603,0,25 0/1:8,23:31:96:802,0,96 +chr16 58018255 . C A 42.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.094;DP=126;Dels=0.00;FS=10.236;HaplotypeScore=5.1579;MLEAC=2;MLEAF=0.250;MQ=27.17;MQ0=0;MQRankSum=0.184;QD=0.79;ReadPosRankSum=-1.482;SB=0.032 GT:AD:DP:GQ:PL 0/0:32,0:32:81:0,81,889 0/1:22,3:25:39:39,0,241 0/0:38,1:40:54:0,54,839 0/1:26,3:29:45:45,0,314 +chr16 58019578 . C A 120.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.673;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.4306;MLEAC=3;MLEAF=0.375;MQ=35.41;MQ0=0;MQRankSum=-1.319;QD=5.49;ReadPosRankSum=-1.319;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:39:39,0,262 0/0:10,0:10:27:0,27,332 0/1:4,3:7:99:102,0,99 0/1:3,1:4:23:23,0,93 +chr16 58030819 . A C 31.51 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.563;DP=21;Dels=0.00;FS=21.847;HaplotypeScore=2.2121;MLEAC=4;MLEAF=0.500;MQ=28.46;MQ0=0;MQRankSum=-0.591;QD=1.50;ReadPosRankSum=-0.296;SB=-1.150e+00 GT:AD:DP:GQ:PL 0/1:5,1:6:12:12,0,94 0/1:1,2:3:17:37,0,17 0/1:5,1:6:8:8,0,113 0/1:5,1:6:16:16,0,48 +chr16 58072111 . G C 70.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.383;DP=103;Dels=0.00;FS=9.469;HaplotypeScore=4.3922;MLEAC=2;MLEAF=0.250;MQ=29.76;MQ0=0;MQRankSum=0.265;QD=1.23;ReadPosRankSum=-1.492;SB=0.437 GT:AD:DP:GQ:PL 0/0:17,1:18:6:0,6,295 0/0:26,2:28:5:0,5,586 0/1:31,5:36:55:55,0,709 0/1:18,3:21:55:55,0,423 +chr16 58126160 rs7204927 C G 287.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.385;DB;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=30.04;MQ0=0;MQRankSum=1.050;QD=8.46;ReadPosRankSum=0.959;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/0:5,0:5:12:0,12,131 0/1:10,8:18:99:235,0,146 0/1:11,2:13:41:41,0,285 1/1:1,2:3:6:57,6,0 +chr16 58426420 . T C 83.20 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.376;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.9323;MLEAC=1;MLEAF=0.125;MQ=32.02;MQ0=0;MQRankSum=-0.265;QD=6.40;ReadPosRankSum=0.897;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:21:0,21,226 0/1:8,5:13:99:119,0,118 0/0:22,1:23:28:0,28,518 0/0:17,1:18:8:0,8,343 +chr16 58538300 . C G 195.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.601;DP=175;Dels=0.00;FS=30.380;HaplotypeScore=5.9507;MLEAC=3;MLEAF=0.375;MQ=34.61;MQ0=0;MQRankSum=-1.774;QD=1.43;ReadPosRankSum=-0.485;SB=0.282 GT:AD:DP:GQ:PL 0/0:36,2:38:9:0,9,895 0/1:36,8:44:99:135,0,879 0/1:45,4:49:48:48,0,1036 0/1:39,5:44:55:55,0,779 +chr16 58713798 rs7191331 G A 733.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.212;DB;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.1720;MLEAC=3;MLEAF=0.375;MQ=35.18;MQ0=0;MQRankSum=-0.431;QD=15.61;ReadPosRankSum=1.112;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/0:10,0:10:24:0,24,293 0/1:6,6:12:13:205,0,13 0/1:8,8:16:99:269,0,188 0/1:10,9:19:99:303,0,217 +chr16 58757683 rs257636 A G 138.72 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.698;DB;DP=247;Dels=0.00;FS=2.259;HaplotypeScore=0.9356;MLEAC=2;MLEAF=0.250;MQ=26.27;MQ0=0;MQRankSum=-6.044;QD=1.49;ReadPosRankSum=-0.322;SB=-9.141e+01 GT:AD:DP:GQ:PL 0/1:6,20:26:27:159,0,27 0/0:90,0:90:99:0,141,1736 0/1:54,13:67:21:21,0,893 0/0:58,6:64:18:0,18,938 +chr16 66196015 rs190189 T C 43.25 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.937;DB;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.4826;MLEAC=4;MLEAF=0.667;MQ=21.58;MQ0=0;MQRankSum=0.937;QD=10.81;ReadPosRankSum=-0.550;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:3:0,3,44 1/1:1,2:3:3:43,3,0 ./. 1/1:0,1:1:3:38,3,0 +chr16 66546029 rs141234377 C T 101.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.323;DB;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.0489;MLEAC=1;MLEAF=0.125;MQ=28.84;MQ0=0;MQRankSum=0.694;QD=4.64;ReadPosRankSum=-1.231;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:51:0,51,609 0/1:16,6:22:99:138,0,318 0/0:23,0:23:54:0,54,631 0/0:16,0:16:33:0,33,363 +chr16 66670523 . T A 234.29 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.606;DP=64;Dels=0.02;FS=22.570;HaplotypeScore=5.5008;MLEAC=5;MLEAF=0.625;MQ=20.39;MQ0=0;MQRankSum=-0.083;QD=3.66;ReadPosRankSum=3.378;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,13:21:12:118,12,0 0/1:8,7:15:38:68,0,38 0/1:5,8:13:14:48,0,14 0/1:5,9:14:17:45,0,17 +chr16 66847511 . A G 48.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.146;DP=145;Dels=0.00;FS=4.853;HaplotypeScore=1.8866;MLEAC=1;MLEAF=0.125;MQ=36.42;MQ0=0;MQRankSum=1.061;QD=3.77;ReadPosRankSum=-1.442;SB=-1.174e-02 GT:AD:DP:GQ:PL 0/0:29,0:29:63:0,63,765 0/0:53,1:54:99:0,104,1690 0/0:48,1:49:99:0,100,1469 0/1:10,3:13:85:85,0,177 +chr16 66951533 . T C 35.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.155;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.6161;MLEAC=3;MLEAF=0.375;MQ=30.09;MQ0=0;MQRankSum=-2.418;QD=1.18;ReadPosRankSum=-2.286;SB=0.113 GT:AD:DP:GQ:PL 0/0:17,1:18:15:0,15,478 0/1:9,1:11:5:5,0,230 0/1:9,3:12:60:60,0,208 0/1:5,2:7:11:11,0,135 +chr16 66969480 . A G 92.58 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.353;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3612;MLEAC=3;MLEAF=0.375;MQ=24.38;MQ0=0;MQRankSum=1.940;QD=1.75;ReadPosRankSum=-1.170;SB=0.045 GT:AD:DP:GQ:PL 0/0:15,0:15:12:0,12,152 0/1:11,2:13:40:40,0,89 0/1:19,1:20:11:11,0,162 0/1:17,3:20:84:84,0,98 +chr16 66976061 . T A 36.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.065;DP=92;Dels=0.03;FS=23.690;HaplotypeScore=12.7789;MLEAC=3;MLEAF=0.375;MQ=25.65;MQ0=0;MQRankSum=-0.989;QD=0.50;ReadPosRankSum=1.840;SB=0.348 GT:AD:DP:GQ:PL 0/1:18,3:21:30:30,0,212 0/1:23,3:26:33:33,0,182 0/0:15,2:17:11:0,11,324 0/1:23,2:25:16:16,0,197 +chr16 67034867 . C G 66.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.710;DP=23;Dels=0.00;FS=6.803;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=29.30;MQ0=0;MQRankSum=-0.452;QD=3.51;ReadPosRankSum=0.194;SB=-1.772e-02 GT:AD:DP:GQ:PL 0/0:3,1:4:6:0,6,88 1/1:3,3:6:6:56,6,0 0/1:9,1:10:23:23,0,53 0/1:2,1:3:27:32,0,27 +chr16 67173815 . T G 607.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.470;DP=91;Dels=0.01;FS=3.163;HaplotypeScore=9.2341;MLEAC=4;MLEAF=0.500;MQ=26.86;MQ0=0;MQRankSum=1.828;QD=6.68;ReadPosRankSum=1.548;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,7:22:36:129,0,36 0/1:20,7:27:99:154,0,122 0/1:17,6:23:99:108,0,112 0/1:8,10:18:31:259,0,31 +chr16 67198740 . C G 52 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.729;DP=10;Dels=0.00;FS=3.522;HaplotypeScore=0.6537;MLEAC=4;MLEAF=0.667;MQ=18.30;MQ0=0;MQRankSum=1.652;QD=10.40;ReadPosRankSum=0.361;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:54,6,0 ./. 0/0:3,1:4:3:0,3,32 1/1:0,1:1:3:37,3,0 +chr16 67227299 . G C 189.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.736;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=1.6615;MLEAC=4;MLEAF=0.500;MQ=35.90;MQ0=0;MQRankSum=-4.087;QD=1.79;ReadPosRankSum=1.211;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,3:27:2:0,2,571 0/1:29,4:33:57:57,0,675 0/1:33,5:38:67:67,0,762 0/1:28,5:33:99:106,0,618 +chr16 67234650 . G C 69.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.550;DP=35;Dels=0.00;FS=2.754;HaplotypeScore=6.6218;MLEAC=4;MLEAF=0.500;MQ=23.04;MQ0=0;MQRankSum=1.150;QD=2.77;ReadPosRankSum=-0.450;SB=-2.261e-01 GT:AD:DP:GQ:PL 1/1:7,1:8:3:32,3,0 0/0:10,0:10:6:0,6,60 0/1:5,2:7:24:51,0,24 0/1:9,1:10:21:29,0,21 +chr16 67234741 rs73586989 A G 150.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.859;DB;DP=62;Dels=0.05;FS=0.000;HaplotypeScore=5.3880;MLEAC=4;MLEAF=0.500;MQ=26.87;MQ0=0;MQRankSum=0.080;QD=2.42;ReadPosRankSum=0.149;SB=-6.658e+01 GT:AD:DP:GQ:PL 0/1:11,1:12:7:7,0,264 0/1:18,2:20:34:34,0,301 0/1:12,6:18:96:96,0,219 0/1:7,2:9:55:55,0,60 +chr16 67261674 . C G 205.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.784;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=11.4855;MLEAC=4;MLEAF=0.500;MQ=25.53;MQ0=0;MQRankSum=2.313;QD=3.21;ReadPosRankSum=-1.784;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:16:99:99,0,132 0/1:10,2:14:57:57,0,76 0/1:15,2:19:43:43,0,83 0/1:10,2:15:49:49,0,59 +chr16 67299903 . G C 291.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.116;DP=54;Dels=0.00;FS=5.461;HaplotypeScore=5.8658;MLEAC=4;MLEAF=0.500;MQ=24.33;MQ0=0;MQRankSum=2.079;QD=5.40;ReadPosRankSum=-0.029;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:62:62,0,202 0/1:6,3:9:10:88,0,10 0/1:9,3:12:73:73,0,87 0/1:9,4:13:52:111,0,52 +chr16 67304915 rs1061356 A G 97.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.630;DB;DP=193;Dels=0.01;FS=13.675;HaplotypeScore=0.9880;MLEAC=1;MLEAF=0.125;MQ=36.37;MQ0=0;MQRankSum=-2.046;QD=2.28;ReadPosRankSum=1.149;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:36,7:43:99:134,0,1046 0/0:40,0:40:99:0,120,1535 0/0:56,0:56:99:0,147,1907 0/0:53,0:53:99:0,147,1855 +chr16 67429045 . T C 65 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.058;DP=49;Dels=0.00;FS=18.061;HaplotypeScore=2.5213;MLEAC=3;MLEAF=0.375;MQ=28.46;MQ0=0;MQRankSum=1.263;QD=1.63;ReadPosRankSum=-0.289;SB=0.921 GT:AD:DP:GQ:PL 0/1:14,2:16:21:21,0,303 0/1:7,2:9:35:35,0,109 0/0:8,1:9:15:0,15,160 0/1:12,3:15:52:52,0,243 +chr16 67469529 . A T 61.32 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.493;DP=27;Dels=0.00;FS=8.846;HaplotypeScore=2.8810;MLEAC=3;MLEAF=0.500;MQ=27.56;MQ0=0;MQRankSum=0.569;QD=2.27;ReadPosRankSum=1.422;SB=-5.419e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:34:34,0,246 0/1:7,2:9:47:47,0,157 0/1:6,1:7:19:19,0,26 ./. +chr16 67573543 . G C 296.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.484;DP=156;Dels=0.01;FS=4.629;HaplotypeScore=8.5281;MLEAC=4;MLEAF=0.500;MQ=31.74;MQ0=0;MQRankSum=-5.005;QD=1.90;ReadPosRankSum=2.356;SB=-1.211e-02 GT:AD:DP:GQ:PL 0/1:33,7:40:99:168,0,542 0/1:30,8:38:38:38,0,496 0/1:40,5:45:74:74,0,769 0/1:21,11:32:59:59,0,361 +chr16 67574129 . A G 69.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.727;DP=68;Dels=0.03;FS=49.875;HaplotypeScore=4.6998;MLEAC=2;MLEAF=0.250;MQ=29.72;MQ0=0;MQRankSum=-3.162;QD=2.24;ReadPosRankSum=-0.010;SB=0.190 GT:AD:DP:GQ:PL 0/1:9,4:13:61:61,0,191 0/0:16,1:17:45:0,45,538 0/1:14,3:17:50:50,0,308 0/0:17,2:19:27:0,27,534 +chr16 67579659 rs75099993 C T 48.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.588;DB;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=11.9571;MLEAC=1;MLEAF=0.125;MQ=26.46;MQ0=0;MQRankSum=-2.575;QD=2.72;ReadPosRankSum=0.145;SB=-1.153e-02 GT:AD:DP:GQ:PL 0/1:12,6:18:85:85,0,281 0/0:22,0:22:42:0,42,446 0/0:26,1:27:48:0,48,525 0/0:21,0:21:39:0,39,418 +chr16 67579879 . G C 86.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.082;DP=151;Dels=0.00;FS=14.721;HaplotypeScore=0.7233;MLEAC=2;MLEAF=0.250;MQ=25.97;MQ0=0;MQRankSum=3.818;QD=1.19;ReadPosRankSum=-2.432;SB=1.68 GT:AD:DP:GQ:PL 0/1:33,3:36:35:35,0,591 0/0:33,1:35:31:0,31,560 0/0:41,2:43:32:0,32,940 0/1:32,5:37:93:93,0,574 +chr16 67806013 . AC A 194.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.024;DP=105;FS=0.000;HaplotypeScore=10.6144;MLEAC=3;MLEAF=0.375;MQ=19.48;MQ0=0;MQRankSum=-0.317;QD=2.37;ReadPosRankSum=-2.830;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/0:22,1:12:4:0,4,153 0/1:26,5:12:99:146,0,113 0/1:28,2:16:51:51,0,243 0/1:18,0:6:48:48,0,59 +chr16 67914794 . T C 33.47 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.074;DP=160;Dels=0.04;FS=37.058;HaplotypeScore=7.0533;MLEAC=2;MLEAF=0.250;MQ=28.03;MQ0=0;MQRankSum=1.241;QD=0.44;ReadPosRankSum=1.656;SB=-4.609e-01 GT:AD:DP:GQ:PL 0/0:37,0:38:54:0,54,571 0/1:32,2:35:8:8,0,433 0/0:43,0:43:69:0,69,728 0/1:33,4:37:65:65,0,436 +chr16 67979423 rs17851876 G T 120.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.672;DB;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.9278;MLEAC=1;MLEAF=0.125;MQ=36.12;MQ0=0;MQRankSum=-1.415;QD=5.26;ReadPosRankSum=0.344;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1282 0/1:17,6:23:99:157,0,411 0/0:47,0:47:99:0,135,1720 0/0:31,0:31:81:0,81,951 +chr16 68012112 . G T 190.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.126;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=1.4981;MLEAC=2;MLEAF=0.250;MQ=31.76;MQ0=0;MQRankSum=2.070;QD=3.18;ReadPosRankSum=-1.445;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,1:35:18:0,18,543 0/0:32,1:33:33:0,33,636 0/1:27,3:30:60:60,0,463 0/1:23,7:30:99:172,0,401 +chr16 68108088 rs184046978 C G 139.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.159;DB;DP=83;Dels=0.00;FS=2.900;HaplotypeScore=1.8842;MLEAC=3;MLEAF=0.375;MQ=33.01;MQ0=0;MQRankSum=-3.078;QD=2.32;ReadPosRankSum=1.850;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:17,2:19:14:14,0,325 0/0:21,2:23:39:0,39,463 0/1:23,4:27:54:54,0,341 0/1:9,5:14:85:114,0,85 +chr16 68109421 . T C 72.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.723;DP=57;Dels=0.00;FS=7.731;HaplotypeScore=0.8257;MLEAC=3;MLEAF=0.375;MQ=32.80;MQ0=0;MQRankSum=-1.811;QD=1.74;ReadPosRankSum=0.964;SB=-5.403e-01 GT:AD:DP:GQ:PL 0/1:9,1:10:7:7,0,234 0/0:14,0:15:30:0,30,373 0/1:13,4:17:76:76,0,271 0/1:13,2:15:32:32,0,91 +chr16 68224853 . T A 133.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.322;DP=174;Dels=0.01;FS=35.623;HaplotypeScore=3.6236;MLEAC=3;MLEAF=0.375;MQ=37.25;MQ0=0;MQRankSum=-3.818;QD=1.03;ReadPosRankSum=-0.504;SB=-2.354e+00 GT:AD:DP:GQ:PL 0/1:49,4:54:3:3,0,1287 0/1:41,5:46:30:30,0,1249 0/0:42,2:44:59:0,59,1370 0/1:22,6:29:99:141,0,638 +chr16 68243569 . A C 38.75 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.201;DP=55;Dels=0.00;FS=50.487;HaplotypeScore=2.5075;MLEAC=2;MLEAF=0.250;MQ=26.32;MQ0=0;MQRankSum=1.283;QD=1.17;ReadPosRankSum=0.586;SB=5.30 GT:AD:DP:GQ:PL 0/1:16,2:18:36:36,0,195 0/0:9,0:9:12:0,12,138 0/1:12,2:15:44:44,0,149 0/0:12,1:13:24:0,24,289 +chr16 68384112 . T A 375.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.121;DP=291;Dels=0.00;FS=75.993;HaplotypeScore=4.1957;MLEAC=3;MLEAF=0.375;MQ=30.13;MQ0=0;MQRankSum=-3.335;QD=1.69;ReadPosRankSum=0.529;SB=0.739 GT:AD:DP:GQ:PL 0/1:54,15:69:99:244,0,1030 0/1:81,10:91:99:118,0,1599 0/0:62,5:68:21:0,21,1262 0/1:56,7:63:57:57,0,1141 +chr16 68712163 . C T 145.87 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.423;DP=171;Dels=0.01;FS=71.574;HaplotypeScore=6.1485;MLEAC=2;MLEAF=0.250;MQ=32.83;MQ0=0;MQRankSum=-4.284;QD=1.76;ReadPosRankSum=3.455;SB=-1.297e+00 GT:AD:DP:GQ:PL 0/1:33,7:40:99:127,0,581 0/1:34,7:42:60:60,0,819 0/0:52,5:57:19:0,19,1432 0/0:28,3:31:10:0,10,615 +chr16 68732049 rs3114409 A C 141.66 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.589;DB;DP=17;Dels=0.00;FS=9.622;HaplotypeScore=6.6253;MLEAC=6;MLEAF=1.00;MQ=18.74;MQ0=0;MQRankSum=1.589;QD=11.80;ReadPosRankSum=-1.589;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:67,6,0 1/1:2,2:5:6:55,6,0 ./. 1/1:1,2:4:6:56,6,0 +chr16 69355102 . A G 251.13 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.493;DP=38;Dels=0.00;FS=16.221;HaplotypeScore=6.7912;MLEAC=5;MLEAF=0.625;MQ=29.00;MQ0=0;MQRankSum=1.493;QD=6.61;ReadPosRankSum=0.205;SB=0.556 GT:AD:DP:GQ:PL 1/1:5,4:9:12:142,12,0 0/1:7,1:8:18:18,0,58 0/1:10,3:13:67:67,0,92 0/1:6,2:8:35:69,0,35 +chr16 69373059 . T A 60.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.202;DP=83;Dels=0.00;FS=61.137;HaplotypeScore=8.2605;MLEAC=3;MLEAF=0.375;MQ=30.45;MQ0=0;MQRankSum=-1.509;QD=0.97;ReadPosRankSum=-0.291;SB=-2.739e+00 GT:AD:DP:GQ:PL 0/1:17,3:20:46:46,0,351 0/1:21,3:24:45:45,0,335 0/1:16,2:18:12:12,0,369 0/0:21,0:21:45:0,45,497 +chr16 69400604 . G C 58.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.397;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=1.0767;MLEAC=3;MLEAF=0.375;MQ=34.11;MQ0=0;MQRankSum=0.310;QD=1.67;ReadPosRankSum=-1.288;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,1:11:15:15,0,232 0/1:11,1:12:6:6,0,309 0/0:12,1:13:6:0,6,345 0/1:9,3:12:78:78,0,222 +chr16 69726498 . C G 456.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.542;DP=75;Dels=0.00;FS=40.550;HaplotypeScore=2.4610;MLEAC=4;MLEAF=0.500;MQ=28.69;MQ0=0;MQRankSum=-3.260;QD=6.09;ReadPosRankSum=2.695;SB=-2.934e-02 GT:AD:DP:GQ:PL 0/1:8,5:13:97:124,0,97 0/1:13,9:22:99:198,0,197 0/1:12,8:20:99:154,0,193 0/1:16,4:20:23:23,0,247 +chr16 69791434 . A G 35.64 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.063;DP=89;Dels=0.00;FS=15.525;HaplotypeScore=3.5278;MLEAC=1;MLEAF=0.125;MQ=16.25;MQ0=0;MQRankSum=0.953;QD=1.43;ReadPosRankSum=-0.111;SB=3.33 GT:AD:DP:GQ:PL 0/0:17,1:18:9:0,9,97 0/0:20,0:20:9:0,9,110 0/0:25,1:26:6:0,6,65 0/1:22,3:25:71:71,0,82 +chr16 69905739 . C A 107.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.486;DP=206;Dels=0.02;FS=29.248;HaplotypeScore=3.8607;MLEAC=3;MLEAF=0.375;MQ=33.02;MQ0=0;MQRankSum=-0.620;QD=0.76;ReadPosRankSum=-0.192;SB=-1.954e+00 GT:AD:DP:GQ:PL 0/1:44,6:50:84:84,0,889 0/1:49,3:52:3:3,0,985 0/0:61,2:63:52:0,52,1138 0/1:33,4:37:61:61,0,577 +chr16 70016697 rs8047236 G A 50.87 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.994;DB;DP=118;Dels=0.00;FS=6.702;HaplotypeScore=0.2433;MLEAC=5;MLEAF=0.625;MQ=9.74;MQ0=0;MQRankSum=1.632;QD=0.61;ReadPosRankSum=-0.096;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,0:34:6:0,6,64 1/1:15,8:23:3:22,3,0 0/1:23,8:31:4:4,0,160 1/1:21,9:30:6:68,6,0 +chr16 70029924 rs62051314 T C 80.07 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.970;DB;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=12.4869;MLEAC=3;MLEAF=0.500;MQ=15.49;MQ0=0;MQRankSum=2.096;QD=2.67;ReadPosRankSum=3.311;SB=12.94 GT:AD:DP:GQ:PL ./. 0/0:22,1:24:9:0,9,107 1/1:10,4:14:6:75,6,0 0/1:10,4:14:23:46,0,23 +chr16 70045693 . A G 30.34 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.660;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=5.6740;MLEAC=3;MLEAF=0.375;MQ=14.81;MQ0=0;MQRankSum=2.451;QD=1.38;ReadPosRankSum=2.240;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:3:0,3,35 0/0:20,0:20:6:0,6,54 1/1:8,1:9:3:26,3,0 0/1:10,2:12:13:45,0,13 +chr16 70154728 . T C 88.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.981;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.2467;MLEAC=4;MLEAF=0.500;MQ=19.47;MQ0=0;MQRankSum=1.569;QD=2.77;ReadPosRankSum=2.108;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:67:67,0,68 0/1:3,1:4:20:20,0,27 0/1:9,1:10:20:20,0,72 0/1:9,2:11:24:24,0,89 +chr16 70286749 . C A 45.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.036;DP=201;Dels=0.00;FS=35.931;HaplotypeScore=3.3189;MLEAC=1;MLEAF=0.125;MQ=36.21;MQ0=0;MQRankSum=-0.104;QD=0.98;ReadPosRankSum=-1.182;SB=-6.100e+00 GT:AD:DP:GQ:PL 0/1:40,6:46:81:81,0,1191 0/0:51,3:54:16:0,16,1370 0/0:51,3:54:32:0,32,1387 0/0:46,1:47:85:0,85,1315 +chr16 70363188 . T C 125.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.233;DP=85;Dels=0.00;FS=10.009;HaplotypeScore=3.2141;MLEAC=3;MLEAF=0.375;MQ=22.57;MQ0=0;MQRankSum=0.197;QD=2.00;ReadPosRankSum=-1.220;SB=0.123 GT:AD:DP:GQ:PL 0/1:12,1:14:22:22,0,77 0/1:20,3:23:61:61,0,154 0/0:19,2:22:15:0,15,172 0/1:19,7:26:86:86,0,87 +chr16 70389379 . C G 43.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.125;DP=116;Dels=0.01;FS=5.968;HaplotypeScore=11.5653;MLEAC=1;MLEAF=0.125;MQ=31.62;MQ0=0;MQRankSum=0.580;QD=1.69;ReadPosRankSum=0.375;SB=0.028 GT:AD:DP:GQ:PL 0/0:25,0:25:39:0,39,457 0/0:32,0:32:69:0,69,774 0/0:31,0:33:60:0,60,751 0/1:21,3:25:80:80,0,127 +chr16 70428788 . A G 59.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.470;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.8568;MLEAC=3;MLEAF=0.375;MQ=31.13;MQ0=0;MQRankSum=-3.660;QD=1.05;ReadPosRankSum=1.855;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:36:0,36,428 0/1:13,4:17:60:60,0,238 0/1:14,3:17:15:15,0,367 0/1:19,3:22:27:27,0,435 +chr16 70432264 . A G 95.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.593;DP=107;Dels=0.04;FS=13.051;HaplotypeScore=9.4907;MLEAC=3;MLEAF=0.375;MQ=28.30;MQ0=0;MQRankSum=0.489;QD=1.16;ReadPosRankSum=-1.357;SB=1.55 GT:AD:DP:GQ:PL 0/1:23,2:25:28:28,0,284 0/1:23,3:26:48:48,0,349 0/0:21,1:23:16:0,16,427 0/1:24,3:29:63:63,0,152 +chr16 70497085 . T G 195.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.261;DP=210;Dels=0.00;FS=125.967;HaplotypeScore=5.4229;MLEAC=3;MLEAF=0.375;MQ=33.18;MQ0=0;MQRankSum=1.232;QD=1.17;ReadPosRankSum=-1.926;SB=0.759 GT:AD:DP:GQ:PL 0/0:40,3:43:24:0,24,1184 0/1:56,5:61:49:49,0,1137 0/1:47,9:56:99:130,0,1276 0/1:45,5:50:60:60,0,986 +chr16 70509328 . T C 63.77 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.279;DP=73;Dels=0.00;FS=21.673;HaplotypeScore=5.5011;MLEAC=4;MLEAF=0.500;MQ=31.21;MQ0=0;MQRankSum=-2.159;QD=1.33;ReadPosRankSum=1.903;SB=-3.407e+00 GT:AD:DP:GQ:PL 0/1:15,3:18:57:57,0,257 0/1:13,2:15:19:19,0,251 0/0:24,1:25:1:0,1,339 0/1:12,3:15:28:28,0,181 +chr16 70531754 rs2303791 T G 1176.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.522;DB;DP=167;Dels=0.00;FS=2.469;HaplotypeScore=1.8318;MLEAC=3;MLEAF=0.375;MQ=38.07;MQ0=0;MQRankSum=-2.510;QD=9.65;ReadPosRankSum=1.111;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,126,1655 0/1:24,12:36:99:359,0,758 0/1:31,18:50:99:494,0,1001 0/1:24,12:36:99:367,0,695 +chr16 70546234 rs3762171 G A 1138.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.366;DB;DP=98;Dels=0.03;FS=0.000;HaplotypeScore=3.5080;MLEAC=3;MLEAF=0.375;MQ=36.49;MQ0=0;MQRankSum=-2.857;QD=15.18;ReadPosRankSum=0.840;SB=-4.440e+02 GT:AD:DP:GQ:PL 0/0:23,0:23:63:0,63,807 0/1:10,10:20:99:336,0,260 0/1:12,15:27:99:499,0,201 0/1:14,11:25:99:347,0,391 +chr16 70721890 . C A 37.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.751;DP=102;Dels=0.00;FS=4.579;HaplotypeScore=1.4738;MLEAC=2;MLEAF=0.250;MQ=37.59;MQ0=0;MQRankSum=-2.469;QD=0.78;ReadPosRankSum=1.326;SB=0.072 GT:AD:DP:GQ:PL 0/1:25,4:29:28:28,0,651 0/0:26,2:28:19:0,19,783 0/0:26,0:26:51:0,51,697 0/1:16,3:19:51:51,0,358 +chr16 70730930 . G T 103.11 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.825;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=4;MLEAF=0.667;MQ=26.98;MQ0=0;MQRankSum=1.031;QD=7.36;ReadPosRankSum=1.186;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:21:52,0,21 ./. 0/1:3,1:4:17:17,0,33 1/1:1,3:4:6:74,6,0 +chr16 70894775 . C T 86.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.211;DP=118;Dels=0.00;FS=14.101;HaplotypeScore=1.7113;MLEAC=2;MLEAF=0.250;MQ=30.75;MQ0=0;MQRankSum=2.546;QD=1.60;ReadPosRankSum=-1.281;SB=-1.444e+00 GT:AD:DP:GQ:PL 0/0:32,0:32:45:0,45,553 0/1:25,1:26:13:13,0,253 0/0:30,2:32:12:0,12,642 0/1:24,4:28:99:114,0,165 +chr16 70908118 rs138686566 G C 1400.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.713;DB;DP=119;Dels=0.01;FS=2.870;HaplotypeScore=0.7896;MLEAC=4;MLEAF=0.500;MQ=36.44;MQ0=0;MQRankSum=-0.548;QD=11.77;ReadPosRankSum=2.114;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,10:31:99:307,0,668 0/1:25,14:39:99:442,0,649 0/1:13,13:26:99:451,0,378 0/1:14,8:22:99:243,0,342 +chr16 70913332 . A T 184.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.961;DP=148;Dels=0.00;FS=26.976;HaplotypeScore=2.7229;MLEAC=4;MLEAF=0.500;MQ=34.04;MQ0=0;MQRankSum=-0.461;QD=1.25;ReadPosRankSum=-2.612;SB=-1.201e-02 GT:AD:DP:GQ:PL 0/1:29,4:33:56:56,0,682 0/1:36,4:40:63:63,0,692 0/1:35,5:40:65:65,0,846 0/1:32,3:35:43:43,0,622 +chr16 70926212 . G A 32.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.035;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.1014;MLEAC=2;MLEAF=0.250;MQ=30.79;MQ0=0;MQRankSum=-1.778;QD=0.49;ReadPosRankSum=2.070;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:33,0:33:72:0,72,811 0/0:28,0:28:42:0,42,474 0/1:28,5:33:67:67,0,527 0/1:32,2:34:3:3,0,521 +chr16 70973035 rs116615613 G A 65.98 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DB;DP=13;Dels=0.00;FS=2.808;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.00;MQ0=0;MQRankSum=0.727;QD=13.20;ReadPosRankSum=-0.727;SB=-3.322e+01 GT:AD:DP:GQ:PL ./. ./. 1/1:2,3:5:9:98,9,0 ./. +chr16 70989376 . T A 149.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.508;DP=257;Dels=0.00;FS=105.629;HaplotypeScore=9.9189;MLEAC=3;MLEAF=0.375;MQ=33.44;MQ0=0;MQRankSum=0.652;QD=0.83;ReadPosRankSum=-0.041;SB=0.721 GT:AD:DP:GQ:PL 0/1:57,5:62:60:60,0,1134 0/1:49,3:52:15:15,0,1044 0/0:76,1:77:99:0,112,1758 0/1:60,6:66:99:118,0,978 +chr16 71008389 rs150780870 A C 1906.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.398;DB;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=1.9871;MLEAC=4;MLEAF=0.500;MQ=36.56;MQ0=0;MQRankSum=-5.602;QD=9.98;ReadPosRankSum=-1.568;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:17,25:42:99:795,0,462 0/1:36,15:51:99:387,0,1185 0/1:28,14:42:99:410,0,907 0/1:40,15:55:99:357,0,1408 +chr16 71127585 rs1398401 G A 58.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.234;DB;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=0.4079;MLEAC=3;MLEAF=0.375;MQ=32.51;MQ0=0;MQRankSum=-0.248;QD=2.56;ReadPosRankSum=1.958;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:51:51,0,264 0/0:13,0:13:24:0,24,323 0/1:7,1:8:21:21,0,167 0/1:4,1:5:30:30,0,55 +chr16 71196410 rs144309697 G A 1113.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.588;DB;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=2.0192;MLEAC=4;MLEAF=0.500;MQ=38.13;MQ0=0;MQRankSum=-1.083;QD=11.14;ReadPosRankSum=1.176;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,17:31:99:589,0,362 0/1:20,9:29:99:264,0,699 0/1:17,6:23:99:155,0,547 0/1:11,5:16:99:148,0,162 +chr16 71417292 . A C 110.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.040;DP=84;Dels=0.01;FS=20.014;HaplotypeScore=5.1688;MLEAC=3;MLEAF=0.375;MQ=32.02;MQ0=0;MQRankSum=-1.031;QD=1.70;ReadPosRankSum=2.169;SB=0.050 GT:AD:DP:GQ:PL 0/1:15,2:17:28:28,0,233 0/0:19,0:19:27:0,27,351 0/1:17,4:21:85:85,0,247 0/1:23,3:26:41:41,0,444 +chr16 71418690 . T G 384.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.245;DP=194;Dels=0.01;FS=8.784;HaplotypeScore=8.9560;MLEAC=4;MLEAF=0.500;MQ=34.60;MQ0=0;MQRankSum=-2.140;QD=1.98;ReadPosRankSum=2.736;SB=-1.365e-02 GT:AD:DP:GQ:PL 0/1:48,6:54:59:59,0,1218 0/1:38,8:46:99:110,0,834 0/1:40,5:45:32:32,0,853 0/1:37,10:47:99:226,0,738 +chr16 71674882 rs2303225 C G 645.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.472;DB;DP=123;Dels=0.00;FS=4.484;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=40.08;MQ0=0;MQRankSum=-2.575;QD=7.78;ReadPosRankSum=0.970;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/1:20,6:26:99:165,0,660 0/0:40,0:40:99:0,108,1395 0/1:18,9:27:99:282,0,514 0/1:22,8:30:99:242,0,526 +chr16 71712625 . T G 279.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.490;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.8447;MLEAC=4;MLEAF=0.500;MQ=30.10;MQ0=0;MQRankSum=-3.127;QD=3.73;ReadPosRankSum=1.429;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,6:18:99:145,0,146 0/1:17,5:22:99:103,0,169 0/1:21,4:25:61:61,0,381 0/1:8,2:10:13:13,0,105 +chr16 71732328 . T A 36.91 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.521;DP=115;Dels=0.00;FS=2.061;HaplotypeScore=1.0624;MLEAC=2;MLEAF=0.250;MQ=20.25;MQ0=0;MQRankSum=2.644;QD=0.70;ReadPosRankSum=0.252;SB=-1.012e+01 GT:AD:DP:GQ:PL 0/0:33,0:33:36:0,36,378 0/1:26,1:27:21:21,0,110 0/0:28,1:29:3:0,3,212 0/1:24,2:26:43:56,0,43 +chr16 71773190 rs904763 G T 1116.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.020;DB;DP=134;Dels=0.00;FS=1.941;HaplotypeScore=1.4838;MLEAC=4;MLEAF=0.500;MQ=35.58;MQ0=0;MQRankSum=-3.938;QD=8.33;ReadPosRankSum=1.581;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:26,5:31:76:76,0,889 0/1:24,14:38:99:386,0,698 0/1:27,14:41:99:434,0,714 0/1:15,9:24:99:263,0,450 +chr16 71792391 . A C 117.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.112;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=9.4206;MLEAC=3;MLEAF=0.375;MQ=26.11;MQ0=0;MQRankSum=-0.988;QD=1.95;ReadPosRankSum=0.531;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:19,5:24:99:107,0,291 0/0:12,3:15:15:0,15,177 0/1:16,2:18:17:17,0,284 0/1:15,2:17:36:36,0,97 +chr16 72003800 . T G 61.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.922;DP=175;Dels=0.00;FS=64.431;HaplotypeScore=3.8782;MLEAC=3;MLEAF=0.375;MQ=35.96;MQ0=0;MQRankSum=-2.183;QD=0.45;ReadPosRankSum=0.358;SB=-1.590e-01 GT:AD:DP:GQ:PL 0/0:35,2:37:7:0,7,762 0/1:52,5:57:37:37,0,1345 0/1:47,5:52:36:36,0,1216 0/1:26,3:29:31:31,0,692 +chr16 72024295 . A C 127.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.180;DP=114;Dels=0.04;FS=0.000;HaplotypeScore=13.7418;MLEAC=3;MLEAF=0.375;MQ=26.07;MQ0=0;MQRankSum=-0.673;QD=1.53;ReadPosRankSum=0.267;SB=7.98 GT:AD:DP:GQ:PL 0/1:27,6:34:99:117,0,279 0/1:34,2:36:33:33,0,161 0/0:28,1:30:15:0,15,143 0/1:8,1:9:20:20,0,74 +chr16 72045903 . C T 34.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.717;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.0965;MLEAC=2;MLEAF=0.250;MQ=25.03;MQ0=0;MQRankSum=-2.440;QD=1.02;ReadPosRankSum=1.562;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,1:13:21:0,21,241 0/1:10,4:14:33:33,0,64 0/0:13,1:14:30:0,30,361 0/1:17,3:20:43:43,0,209 +chr16 72090184 . C T 32.34 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.129;DP=113;Dels=0.01;FS=4.708;HaplotypeScore=9.7766;MLEAC=2;MLEAF=0.250;MQ=26.88;MQ0=0;MQRankSum=-2.190;QD=0.60;ReadPosRankSum=3.007;SB=0.372 GT:AD:DP:GQ:PL 0/0:28,3:31:7:0,7,337 0/1:21,7:29:65:65,0,283 0/1:22,3:25:4:4,0,242 0/0:24,3:27:5:0,5,304 +chr16 72146441 rs7940 C G 2616.55 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.409;DB;DP=103;Dels=0.00;FS=7.576;HaplotypeScore=0.9849;MLEAC=7;MLEAF=0.875;MQ=30.46;MQ0=0;MQRankSum=0.577;QD=25.40;ReadPosRankSum=1.324;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,8:22:99:187,0,364 1/1:1,23:24:40:779,40,0 1/1:1,28:29:81:942,81,0 1/1:2,26:28:26:753,26,0 +chr16 72170409 . G T 93.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.977;DP=153;Dels=0.03;FS=108.009;HaplotypeScore=34.8302;MLEAC=3;MLEAF=0.375;MQ=26.89;MQ0=0;MQRankSum=-2.262;QD=0.82;ReadPosRankSum=1.382;SB=-2.021e+00 GT:AD:DP:GQ:PL 0/1:35,6:41:39:39,0,618 0/1:30,5:35:55:55,0,433 0/0:35,2:37:51:0,51,749 0/1:27,6:35:43:43,0,400 +chr16 74444838 rs142404156 A G 159.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.123;DB;DP=53;Dels=0.00;FS=11.942;HaplotypeScore=0.2235;MLEAC=3;MLEAF=0.375;MQ=22.90;MQ0=0;MQRankSum=-0.311;QD=3.33;ReadPosRankSum=1.638;SB=-7.388e+01 GT:AD:DP:GQ:PL 0/0:4,1:5:3:0,3,27 0/1:8,2:10:40:40,0,113 0/1:13,6:19:99:103,0,127 0/1:13,6:19:58:58,0,172 +chr16 74499607 . G C 1218.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.133;DP=193;Dels=0.00;FS=190.738;HaplotypeScore=12.5280;MLEAC=4;MLEAF=0.500;MQ=28.81;MQ0=0;MQRankSum=-3.963;QD=6.31;ReadPosRankSum=3.735;SB=-1.550e+01 GT:AD:DP:GQ:PL 0/1:32,16:48:99:364,0,462 0/1:28,15:44:99:288,0,420 0/1:40,19:59:99:372,0,667 0/1:28,11:42:99:237,0,276 +chr16 74537591 rs4887772 C T 2209.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.593;DB;DP=204;Dels=0.00;FS=1.824;HaplotypeScore=13.5386;MLEAC=4;MLEAF=0.500;MQ=34.60;MQ0=0;MQRankSum=1.796;QD=10.83;ReadPosRankSum=1.825;SB=-1.118e+03 GT:AD:DP:GQ:PL 0/1:36,27:63:99:866,0,872 0/1:36,17:53:99:540,0,918 0/1:43,23:66:99:671,0,1282 0/1:15,7:22:99:175,0,369 +chr16 74685881 rs112942529 T A 424.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.620;DB;DP=254;Dels=0.01;FS=170.927;HaplotypeScore=29.5913;MLEAC=4;MLEAF=0.500;MQ=34.05;MQ0=0;MQRankSum=-7.136;QD=1.67;ReadPosRankSum=5.805;SB=-6.880e-02 GT:AD:DP:GQ:PL 0/1:62,8:70:18:18,0,1617 0/1:56,15:71:99:203,0,1166 0/1:55,14:69:99:170,0,1356 0/1:33,8:41:76:76,0,788 +chr16 74706551 . G T 42.42 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.150;DP=33;Dels=0.03;FS=2.673;HaplotypeScore=4.1630;MLEAC=3;MLEAF=0.500;MQ=15.94;MQ0=0;MQRankSum=1.450;QD=1.63;ReadPosRankSum=0.650;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:45:45,0,54 0/1:10,1:11:19:19,0,59 ./. 0/1:4,1:5:17:17,0,21 +chr16 74877216 . T C 35.31 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.919;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.2230;MLEAC=1;MLEAF=0.125;MQ=16.32;MQ0=0;MQRankSum=2.329;QD=1.14;ReadPosRankSum=0.181;SB=0.227 GT:AD:DP:GQ:PL 0/0:25,0:25:9:0,9,77 0/1:29,2:31:71:71,0,106 0/0:26,0:26:12:0,12,128 0/0:25,0:25:12:0,12,136 +chr16 74923554 . A G 638.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.762;DP=83;Dels=0.00;FS=3.163;HaplotypeScore=3.6880;MLEAC=4;MLEAF=0.500;MQ=27.65;MQ0=0;MQRankSum=-1.190;QD=7.69;ReadPosRankSum=1.642;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,4:18:89:89,0,146 0/1:12,13:25:59:292,0,59 0/1:13,8:21:35:202,0,35 0/1:14,5:19:98:98,0,138 +chr16 75147716 . A T 33.42 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.623;DP=97;Dels=0.00;FS=9.624;HaplotypeScore=1.9087;MLEAC=3;MLEAF=0.375;MQ=34.41;MQ0=0;MQRankSum=-2.465;QD=0.40;ReadPosRankSum=-0.296;SB=0.682 GT:AD:DP:GQ:PL 0/1:24,2:26:15:15,0,636 0/1:20,4:24:47:47,0,515 0/1:30,3:33:13:13,0,879 0/0:13,1:14:6:0,6,336 +chr16 75513265 . C T 47.43 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.240;DP=65;Dels=0.00;FS=11.735;HaplotypeScore=9.0369;MLEAC=2;MLEAF=0.250;MQ=22.92;MQ0=0;MQRankSum=1.815;QD=1.32;ReadPosRankSum=-1.671;SB=0.818 GT:AD:DP:GQ:PL 0/1:12,2:14:55:55,0,64 0/0:15,1:17:12:0,12,101 0/1:19,3:22:33:33,0,124 0/0:12,0:12:6:0,6,61 +chr16 75575410 rs7202717 G A 1957.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.539;DB;DP=197;Dels=0.00;FS=2.555;HaplotypeScore=2.9601;MLEAC=3;MLEAF=0.375;MQ=42.48;MQ0=0;MQRankSum=-4.105;QD=13.32;ReadPosRankSum=1.817;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,19:51:99:645,0,1105 0/0:50,0:50:99:0,150,2100 0/1:31,22:53:99:759,0,1040 0/1:26,17:43:99:597,0,780 +chr16 75642592 rs4888438 G C 37.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.198;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.3670;MLEAC=3;MLEAF=0.375;MQ=32.18;MQ0=0;MQRankSum=0.198;QD=7.45;ReadPosRankSum=0.198;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:43,3,0 0/0:3,0:3:6:0,6,88 0/1:2,1:3:28:35,0,28 0/0:1,0:1:3:0,3,28 +chr16 77228560 . C T 72.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.602;DP=49;Dels=0.02;FS=27.678;HaplotypeScore=15.3444;MLEAC=4;MLEAF=0.500;MQ=24.21;MQ0=0;MQRankSum=0.356;QD=1.48;ReadPosRankSum=1.744;SB=-1.755e+00 GT:AD:DP:GQ:PL 0/1:7,3:10:71:71,0,145 0/1:12,2:14:30:30,0,106 0/1:11,1:12:3:3,0,226 0/1:11,1:12:9:9,0,110 +chr16 77769803 . C T 1795.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.340;DP=260;Dels=0.00;FS=140.105;HaplotypeScore=11.2165;MLEAC=4;MLEAF=0.500;MQ=29.53;MQ0=0;MQRankSum=-7.390;QD=6.91;ReadPosRankSum=5.385;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:53,24:77:99:403,0,1115 0/1:32,26:58:99:466,0,646 0/1:43,27:70:99:524,0,990 0/1:29,24:54:99:445,0,466 +chr16 77896813 . A G 144.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.046;DP=89;Dels=0.02;FS=5.145;HaplotypeScore=4.9425;MLEAC=3;MLEAF=0.375;MQ=28.85;MQ0=0;MQRankSum=-0.453;QD=2.04;ReadPosRankSum=3.077;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,4:18:89:89,0,101 0/1:19,2:21:18:18,0,236 0/1:27,4:31:80:80,0,220 0/0:17,0:17:9:0,9,104 +chr16 78859207 . G C 52.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.662;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.7288;MLEAC=2;MLEAF=0.250;MQ=26.10;MQ0=0;MQRankSum=-0.904;QD=3.52;ReadPosRankSum=1.837;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:15:0,15,194 0/1:6,5:11:69:69,0,71 0/0:7,0:7:18:0,18,179 0/1:3,1:4:20:25,0,20 +chr16 78859709 . G T 71.34 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.722;DP=54;Dels=0.00;FS=5.069;HaplotypeScore=2.2628;MLEAC=3;MLEAF=0.375;MQ=25.16;MQ0=0;MQRankSum=0.392;QD=1.62;ReadPosRankSum=-0.227;SB=-4.537e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:9:9,0,120 0/1:12,2:14:15:15,0,133 0/1:15,4:20:89:89,0,121 0/0:10,0:10:9:0,9,94 +chr16 80332941 rs7185715 C T 41.55 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.996;DB;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.8892;MLEAC=1;MLEAF=0.125;MQ=30.25;MQ0=0;MQRankSum=1.528;QD=8.31;ReadPosRankSum=1.262;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:12:0,12,170 0/1:3,2:5:31:77,0,31 0/0:6,0:6:6:0,6,77 0/0:4,0:4:9:0,9,109 +chr16 81095790 . T G 37.45 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.706;DP=110;Dels=0.03;FS=0.000;HaplotypeScore=4.7281;MLEAC=2;MLEAF=0.250;MQ=30.97;MQ0=0;MQRankSum=-1.392;QD=0.65;ReadPosRankSum=1.439;SB=-7.712e-03 GT:AD:DP:GQ:PL 0/1:22,2:24:12:12,0,365 0/0:21,1:22:20:0,20,441 0/0:26,2:29:28:0,28,559 0/1:28,4:32:66:66,0,452 +chr16 81180988 rs7194136 C G 5197.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=7.873;DB;DP=294;Dels=0.01;FS=45.474;HaplotypeScore=9.3809;MLEAC=4;MLEAF=0.500;MQ=34.77;MQ0=0;MQRankSum=2.648;QD=17.68;ReadPosRankSum=1.811;SB=-9.480e+02 GT:AD:DP:GQ:PL 0/1:32,36:69:99:1158,0,839 0/1:32,43:75:99:1420,0,814 0/1:34,47:81:99:1622,0,887 0/1:35,32:67:99:997,0,785 +chr16 81183266 rs8044870 A G 2169.99 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.016;DB;DP=63;Dels=0.00;FS=41.735;HaplotypeScore=0.5406;MLEAC=8;MLEAF=1.00;MQ=37.80;MQ0=0;MQRankSum=4.243;QD=34.44;ReadPosRankSum=-0.034;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,9:10:27:377,27,0 1/1:2,20:22:60:805,60,0 1/1:3,17:20:51:701,51,0 1/1:3,8:11:24:326,24,0 +chr16 81213422 rs4889262 C T 617.28 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.096;DB;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.0091;MLEAC=6;MLEAF=0.750;MQ=31.55;MQ0=0;MQRankSum=0.068;QD=12.86;ReadPosRankSum=0.987;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:19:19,0,202 0/1:11,2:13:47:47,0,320 1/1:4,9:13:2:307,2,0 1/1:6,8:14:24:288,24,0 +chr16 81242194 rs6564838 T C 2644.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.334;DB;DP=114;Dels=0.04;FS=13.897;HaplotypeScore=7.0351;MLEAC=7;MLEAF=0.875;MQ=33.27;MQ0=0;MQRankSum=-4.229;QD=23.20;ReadPosRankSum=-0.008;SB=-1.193e-02 GT:AD:DP:GQ:PL 0/1:22,7:29:99:185,0,595 1/1:3,27:30:81:970,81,0 1/1:2,21:23:63:744,63,0 1/1:2,26:28:44:790,44,0 +chr16 81301460 rs34500060 G C 170.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.822;DB;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.7830;MLEAC=1;MLEAF=0.125;MQ=26.80;MQ0=0;MQRankSum=2.611;QD=12.15;ReadPosRankSum=-0.789;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,6:14:45:206,0,45 0/0:10,0:10:12:0,12,133 0/0:13,0:13:21:0,21,227 0/0:17,0:17:24:0,24,249 +chr16 81396574 rs12448813 G C 38.27 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.026;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=24.73;MQ0=0;MQRankSum=1.026;QD=19.14;ReadPosRankSum=1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6:73,6,0 0/0:2,0:2:3:0,3,23 ./. +chr16 82184973 rs2303268 A G 107.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.957;DB;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.5915;MLEAC=1;MLEAF=0.125;MQ=30.16;MQ0=0;MQRankSum=-0.448;QD=6.69;ReadPosRankSum=-0.689;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,7:16:99:143,0,164 0/0:19,0:19:45:0,45,559 0/0:20,0:20:42:0,42,538 0/0:9,0:9:15:0,15,162 +chr16 83842794 . A C 93.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.187;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7470;MLEAC=2;MLEAF=0.250;MQ=35.38;MQ0=0;MQRankSum=0.614;QD=1.83;ReadPosRankSum=-1.380;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,0:22:45:0,45,557 0/0:28,0:28:78:0,78,929 0/1:23,3:26:61:61,0,423 0/1:22,3:25:74:74,0,343 +chr16 83992973 . A G 56.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.705;DP=83;Dels=0.01;FS=2.366;HaplotypeScore=5.5649;MLEAC=3;MLEAF=0.375;MQ=26.65;MQ0=0;MQRankSum=-0.847;QD=1.38;ReadPosRankSum=1.510;SB=0.239 GT:AD:DP:GQ:PL 0/1:16,3:19:60:60,0,210 0/0:17,1:18:3:0,3,279 0/0:20,2:22:2:0,2,254 0/1:18,4:22:35:35,0,340 +chr16 83999261 rs35132222 C A 91.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.790;DB;DP=104;Dels=0.00;FS=1.577;HaplotypeScore=7.0938;MLEAC=1;MLEAF=0.125;MQ=33.61;MQ0=0;MQRankSum=-2.452;QD=5.11;ReadPosRankSum=-1.071;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:12,6:18:99:128,0,143 0/0:18,1:20:45:0,45,524 0/0:28,0:28:69:0,69,863 0/0:38,0:38:99:0,102,1268 +chr16 84066909 . A G 132.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.142;DP=118;Dels=0.02;FS=27.194;HaplotypeScore=44.8170;MLEAC=3;MLEAF=0.375;MQ=23.82;MQ0=0;MQRankSum=1.340;QD=1.36;ReadPosRankSum=0.554;SB=0.184 GT:AD:DP:GQ:PL 0/0:21,0:21:12:0,12,133 0/1:26,5:31:99:99,0,147 0/1:31,1:32:15:15,0,152 0/1:28,4:32:61:61,0,306 +chr16 84132628 . G C 35.38 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.584;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=15.3606;MLEAC=2;MLEAF=0.250;MQ=32.26;MQ0=0;MQRankSum=-2.238;QD=0.67;ReadPosRankSum=-3.194;SB=-2.487e+00 GT:AD:DP:GQ:PL 0/1:22,5:27:69:69,0,495 0/1:24,2:26:4:4,0,578 0/0:39,3:42:22:0,22,1172 0/0:23,1:24:18:0,18,668 +chr16 84256501 . G T 66.05 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.450;DP=54;Dels=0.00;FS=29.106;HaplotypeScore=10.1141;MLEAC=4;MLEAF=0.500;MQ=26.85;MQ0=0;MQRankSum=0.083;QD=1.22;ReadPosRankSum=1.317;SB=-1.262e+00 GT:AD:DP:GQ:PL 0/1:14,1:15:13:13,0,192 0/1:9,3:12:65:65,0,91 0/1:6,2:9:25:25,0,117 0/1:15,3:18:4:4,0,177 +chr16 84492875 . G C 276.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.611;DP=143;Dels=0.03;FS=53.906;HaplotypeScore=7.0753;MLEAC=1;MLEAF=0.125;MQ=31.50;MQ0=0;MQRankSum=-0.798;QD=3.69;ReadPosRankSum=0.033;SB=-5.895e+00 GT:AD:DP:GQ:PL 0/1:29,2:31:2:2,0,566 0/0:25,2:27:41:0,41,719 0/0:39,2:41:27:0,27,931 0/1:28,12:40:99:311,0,445 +chr16 84513556 . T C 77.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.318;DP=83;Dels=0.02;FS=67.318;HaplotypeScore=5.4056;MLEAC=3;MLEAF=0.375;MQ=33.46;MQ0=0;MQRankSum=-3.577;QD=1.12;ReadPosRankSum=1.248;SB=-4.964e-01 GT:AD:DP:GQ:PL 0/1:18,2:20:14:14,0,397 0/1:19,2:22:22:22,0,202 0/1:21,5:26:83:83,0,576 0/0:12,1:13:6:0,6,298 +chr16 84884072 rs4782673 T G 2980.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.020;DB;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.2489;MLEAC=7;MLEAF=0.875;MQ=37.08;MQ0=0;MQRankSum=-2.785;QD=29.51;ReadPosRankSum=2.899;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,30:31:90:1181,90,0 0/1:18,9:27:99:265,0,621 1/1:1,21:22:63:812,63,0 1/1:1,20:21:60:767,60,0 +chr16 85696655 . T G 131.12 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.270;DP=36;Dels=0.03;FS=17.160;HaplotypeScore=8.6208;MLEAC=8;MLEAF=1.00;MQ=19.81;MQ0=0;MQRankSum=2.329;QD=3.64;ReadPosRankSum=0.529;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,2:7:3:32,3,0 1/1:5,3:8:6:50,6,0 1/1:5,3:8:6:53,6,0 1/1:11,1:12:3:33,3,0 +chr16 85697211 . A G 166.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.028;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=12.8325;MLEAC=4;MLEAF=0.500;MQ=27.89;MQ0=0;MQRankSum=-0.398;QD=1.50;ReadPosRankSum=-1.577;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:23,1:24:1:1,0,272 0/1:29,4:33:83:83,0,330 0/1:27,6:34:78:78,0,347 0/1:17,2:19:45:45,0,198 +chr16 85721048 . T C 30.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=4.413;DP=226;Dels=0.00;FS=6.491;HaplotypeScore=1.9050;MLEAC=1;MLEAF=0.125;MQ=35.29;MQ0=0;MQRankSum=-2.352;QD=0.60;ReadPosRankSum=-3.242;SB=-5.630e-03 GT:AD:DP:GQ:PL 0/0:58,1:59:99:0,140,2100 0/1:46,6:52:67:67,0,1468 0/0:66,1:67:99:0,156,2251 0/0:45,3:48:47:0,47,1383 +chr16 85946798 . G T 37.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.588;DP=153;Dels=0.02;FS=7.273;HaplotypeScore=12.9025;MLEAC=1;MLEAF=0.125;MQ=30.66;MQ0=0;MQRankSum=-2.864;QD=0.90;ReadPosRankSum=1.264;SB=-9.920e-03 GT:AD:DP:GQ:PL 0/0:38,2:40:40:0,40,757 0/1:33,5:39:74:74,0,459 0/0:38,0:38:72:0,72,841 0/0:33,0:33:60:0,60,734 +chr16 86544749 . C G 187.80 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.648;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=6.1845;MLEAC=3;MLEAF=0.500;MQ=23.34;MQ0=0;MQRankSum=2.155;QD=6.06;ReadPosRankSum=1.986;SB=17.90 GT:AD:DP:GQ:PL ./. 0/1:5,6:11:9:129,0,9 1/1:3,3:7:3:35,3,0 0/1:8,3:12:19:62,0,19 +chr16 86575721 . C T 440.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.210;DP=83;Dels=0.00;FS=5.230;HaplotypeScore=3.0495;MLEAC=4;MLEAF=0.500;MQ=30.71;MQ0=0;MQRankSum=0.148;QD=5.31;ReadPosRankSum=1.067;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,7:24:99:213,0,231 0/1:15,5:21:94:94,0,222 0/1:14,4:18:99:103,0,194 0/1:17,3:20:73:73,0,183 +chr16 86588265 . T C 64.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.777;DP=210;Dels=0.02;FS=33.415;HaplotypeScore=3.1207;MLEAC=2;MLEAF=0.250;MQ=34.91;MQ0=0;MQRankSum=-3.701;QD=0.77;ReadPosRankSum=-0.043;SB=-2.677e+00 GT:AD:DP:GQ:PL 0/0:64,1:65:99:0,125,1765 0/1:46,8:54:97:97,0,1233 0/0:54,4:58:58:0,58,1493 0/1:27,2:29:7:7,0,640 +chr16 87446483 . G C 66.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.549;DP=104;Dels=0.00;FS=17.655;HaplotypeScore=2.4518;MLEAC=4;MLEAF=0.500;MQ=31.51;MQ0=0;MQRankSum=-1.514;QD=0.88;ReadPosRankSum=0.430;SB=-2.895e+00 GT:AD:DP:GQ:PL 0/1:22,5:27:44:44,0,538 0/0:26,2:28:1:0,1,453 0/1:26,2:28:7:7,0,528 0/1:18,3:21:55:55,0,303 +chr16 87600355 rs28583923 G A 120.14 . AC=6;AF=1.00;AN=6;DB;DP=8;Dels=0.00;FS=13.222;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=22.95;MQ0=0;QD=24.03;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 1/1:0,1:1:3:31,3,0 ./. 1/1:0,2:2:6:70,6,0 +chr16 87678576 rs34975147 C T 65.05 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.941;DB;DP=49;Dels=0.00;FS=5.179;HaplotypeScore=2.3130;MLEAC=1;MLEAF=0.125;MQ=29.66;MQ0=0;MQRankSum=-0.635;QD=5.42;ReadPosRankSum=-2.188;SB=0.273 GT:AD:DP:GQ:PL 0/0:10,0:10:18:0,18,221 0/1:7,5:12:99:101,0,196 0/0:17,0:17:39:0,39,486 0/0:9,0:10:15:0,15,164 +chr16 87742856 . A T 175.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.180;DP=85;Dels=0.00;FS=26.460;HaplotypeScore=5.2828;MLEAC=4;MLEAF=0.500;MQ=28.27;MQ0=0;MQRankSum=-1.009;QD=2.07;ReadPosRankSum=0.839;SB=-3.888e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:80:80,0,175 0/1:19,3:22:56:56,0,176 0/1:21,2:23:21:21,0,341 0/1:17,3:20:61:61,0,329 +chr16 88555301 rs34251187 C A 530.88 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.442;DB;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.2447;MLEAC=5;MLEAF=0.625;MQ=24.76;MQ0=0;MQRankSum=3.093;QD=13.61;ReadPosRankSum=1.722;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,7:10:21:224,21,0 0/1:6,4:10:96:96,0,105 0/1:5,3:8:65:89,0,65 0/1:5,6:11:4:166,0,4 +chr16 88643604 . G C 36.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.265;DP=101;Dels=0.00;FS=24.228;HaplotypeScore=9.8378;MLEAC=3;MLEAF=0.375;MQ=28.08;MQ0=0;MQRankSum=-1.450;QD=0.51;ReadPosRankSum=0.074;SB=0.977 GT:AD:DP:GQ:PL 0/1:16,2:18:28:28,0,238 0/0:30,1:31:36:0,36,422 0/1:27,2:29:15:15,0,512 0/1:21,2:23:36:36,0,164 +chr16 88689835 . A G 44.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.774;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7426;MLEAC=1;MLEAF=0.125;MQ=39.02;MQ0=0;MQRankSum=-1.973;QD=1.80;ReadPosRankSum=-0.730;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,0:22:54:0,54,664 0/0:25,0:25:57:0,57,738 0/0:23,0:23:51:0,51,628 0/1:21,4:25:81:81,0,349 +chr16 88697622 . C A 106.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.270;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=2.0614;MLEAC=3;MLEAF=0.375;MQ=32.48;MQ0=0;MQRankSum=-1.248;QD=1.15;ReadPosRankSum=-1.484;SB=-1.172e-02 GT:AD:DP:GQ:PL 0/1:26,2:28:3:3,0,587 0/1:26,4:30:73:73,0,427 0/0:33,2:35:46:0,46,848 0/1:28,5:33:71:71,0,622 +chr16 88778167 rs73262659 T C 127.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.878;DB;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=1.6387;MLEAC=2;MLEAF=0.250;MQ=32.97;MQ0=0;MQRankSum=-2.070;QD=4.13;ReadPosRankSum=0.414;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:99:103,0,258 0/0:22,0:22:60:0,60,705 0/0:15,1:16:9:0,9,465 0/1:9,4:14:66:66,0,158 +chr16 88781293 . G T 77.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.131;DP=39;Dels=0.00;FS=2.721;HaplotypeScore=3.5924;MLEAC=4;MLEAF=0.500;MQ=24.15;MQ0=0;MQRankSum=-0.136;QD=2.00;ReadPosRankSum=0.226;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:33:33,0,118 0/1:6,2:9:36:36,0,48 0/1:10,2:12:40:40,0,118 0/1:5,3:8:11:11,0,73 +chr16 88792061 . T G 47.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.723;DP=83;Dels=0.00;FS=15.532;HaplotypeScore=1.8023;MLEAC=2;MLEAF=0.250;MQ=32.79;MQ0=0;MQRankSum=1.040;QD=1.03;ReadPosRankSum=-1.337;SB=0.135 GT:AD:DP:GQ:PL 0/0:13,0:13:21:0,21,262 0/1:24,4:28:59:59,0,560 0/0:24,0:24:60:0,60,702 0/1:16,2:18:30:30,0,403 +chr16 89167395 rs6500526 C T 850.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.158;DB;DP=151;Dels=0.00;FS=0.750;HaplotypeScore=3.2757;MLEAC=3;MLEAF=0.375;MQ=34.79;MQ0=0;MQRankSum=-4.953;QD=13.29;ReadPosRankSum=1.922;SB=-3.401e+02 GT:AD:DP:GQ:PL 1/1:4,20:24:60:666,60,0 0/0:49,0:49:99:0,126,1604 0/1:27,13:40:99:234,0,807 0/0:34,3:38:22:0,22,943 +chr16 89187111 . C T 369.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.818;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=14.4485;MLEAC=4;MLEAF=0.500;MQ=26.48;MQ0=0;MQRankSum=0.439;QD=3.39;ReadPosRankSum=3.845;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,8:29:99:195,0,236 0/1:19,3:22:22:22,0,230 0/1:22,6:28:99:140,0,194 0/1:25,4:29:55:55,0,228 +chr16 89335045 rs148332563 G A 83.76 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.729;DB;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.2373;MLEAC=5;MLEAF=0.833;MQ=20.35;MQ0=0;MQRankSum=0.361;QD=5.58;ReadPosRankSum=-0.361;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,3:6:9:83,9,0 0/1:6,1:7:14:14,0,46 ./. 1/1:1,1:2:3:26,3,0 +chr16 89599040 . G C 35.27 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.643;DP=79;Dels=0.00;FS=42.176;HaplotypeScore=4.1461;MLEAC=2;MLEAF=0.250;MQ=30.58;MQ0=0;MQRankSum=-0.601;QD=0.82;ReadPosRankSum=-0.873;SB=-8.860e-01 GT:AD:DP:GQ:PL 0/1:16,1:18:5:5,0,317 0/1:21,4:25:68:68,0,503 0/0:18,0:18:39:0,39,511 0/0:17,1:18:6:0,6,351 +chr16 89644001 rs455527 T C 85.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.278;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.2493;MLEAC=2;MLEAF=0.250;MQ=34.21;MQ0=0;MQRankSum=-1.034;QD=12.24;ReadPosRankSum=-0.597;SB=0.342 GT:AD:DP:GQ:PL 0/1:2,3:5:31:100,0,31 0/0:3,0:3:6:0,6,75 0/0:4,0:4:9:0,9,110 0/1:1,1:2:26:26,0,36 +chr16 89662967 . G C 107.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.459;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1613;MLEAC=3;MLEAF=0.375;MQ=35.58;MQ0=0;MQRankSum=-3.734;QD=1.70;ReadPosRankSum=0.294;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:95:95,0,281 0/1:23,3:26:29:29,0,634 0/0:27,1:28:12:0,12,509 0/1:19,2:21:26:26,0,387 +chr16 89764687 rs189370159 C A 75.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.218;DB;DP=148;Dels=0.01;FS=36.998;HaplotypeScore=12.7493;MLEAC=3;MLEAF=0.375;MQ=29.75;MQ0=0;MQRankSum=0.014;QD=0.67;ReadPosRankSum=0.938;SB=-7.074e-01 GT:AD:DP:GQ:PL 0/1:33,4:37:46:46,0,619 0/1:27,4:31:52:52,0,366 0/1:40,3:43:19:19,0,645 0/0:31,3:35:4:0,4,431 +chr16 89764749 . C A 173.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.350;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=11.9277;MLEAC=3;MLEAF=0.375;MQ=29.52;MQ0=0;MQRankSum=-1.811;QD=1.79;ReadPosRankSum=3.546;SB=0.428 GT:AD:DP:GQ:PL 0/1:21,5:26:86:86,0,160 0/0:27,1:28:10:0,10,264 0/1:33,4:39:89:89,0,98 0/1:25,6:31:41:41,0,157 +chr16 89967181 . G A,T 80.83 . AC=2,2;AF=0.250,0.250;AN=8;BaseQRankSum=2.557;DP=74;Dels=0.00;FS=42.355;HaplotypeScore=8.9752;MLEAC=2,2;MLEAF=0.250,0.250;MQ=24.68;MQ0=0;MQRankSum=0.473;QD=1.09;ReadPosRankSum=0.137;SB=-4.798e+01 GT:AD:DP:GQ:PL 0/1:18,2,0:20:28:28,0,198,49,204,253 0/1:12,3,1:16:39:50,0,171,39,148,216 0/2:16,0,3:19:43:43,64,240,0,176,170 0/2:17,0,2:19:40:40,58,207,0,149,143 +chr16 89975496 rs57940434 G A 107.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.215;DB;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=4.6250;MLEAC=1;MLEAF=0.125;MQ=30.65;MQ0=0;MQRankSum=-0.604;QD=5.40;ReadPosRankSum=0.153;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:14,6:20:99:144,0,307 0/0:28,1:29:51:0,51,874 0/0:41,0:41:90:0,90,991 0/0:24,1:25:54:0,54,646 +chr16 89986618 . T C 177.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.835;DP=84;Dels=0.00;FS=46.797;HaplotypeScore=8.2223;MLEAC=4;MLEAF=0.500;MQ=28.28;MQ0=0;MQRankSum=-4.578;QD=2.11;ReadPosRankSum=4.133;SB=-1.752e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:31:31,0,234 0/1:12,7:19:36:36,0,256 0/1:18,9:27:99:121,0,322 0/1:19,7:26:32:32,0,364 +chr16 90027492 . C T 83.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.521;DP=108;Dels=0.01;FS=21.280;HaplotypeScore=14.1348;MLEAC=4;MLEAF=0.500;MQ=22.37;MQ0=0;MQRankSum=-0.181;QD=1.03;ReadPosRankSum=1.789;SB=-1.169e+00 GT:AD:DP:GQ:PL 0/1:20,4:25:67:67,0,260 0/1:24,4:28:19:19,0,210 0/0:24,3:27:1:0,1,218 0/1:24,3:27:38:38,0,110 +chr17 11802 rs111634325 C T 84.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.688;DB;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.4202;MLEAC=3;MLEAF=0.375;MQ=22.85;MQ0=0;MQRankSum=-0.692;QD=4.25;ReadPosRankSum=0.581;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:19:19,0,95 0/0:10,0:10:18:0,18,195 0/1:3,2:5:26:26,0,28 0/1:5,4:9:83:83,0,92 +chr17 263367 rs192433986 A T 101.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.747;DB;DP=72;Dels=0.00;FS=18.858;HaplotypeScore=3.2529;MLEAC=3;MLEAF=0.375;MQ=13.62;MQ0=0;MQRankSum=2.910;QD=1.74;ReadPosRankSum=0.541;SB=-2.181e+01 GT:AD:DP:GQ:PL 0/0:13,1:14:6:0,6,67 0/1:16,3:19:16:16,0,29 0/1:21,2:23:34:34,0,61 0/1:11,5:16:12:93,0,12 +chr17 649505 rs4968104 T A 1375.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.021;DB;DP=214;Dels=0.01;FS=0.629;HaplotypeScore=10.3501;MLEAC=3;MLEAF=0.375;MQ=35.47;MQ0=0;MQRankSum=-5.448;QD=8.88;ReadPosRankSum=2.804;SB=-4.560e+02 GT:AD:DP:GQ:PL 0/1:38,21:59:99:542,0,1044 0/0:58,0:58:99:0,150,1896 0/1:27,23:51:99:578,0,707 0/1:30,13:43:99:299,0,736 +chr17 1375526 . G C 38.17 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.834;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=5.9509;MLEAC=1;MLEAF=0.125;MQ=29.63;MQ0=0;MQRankSum=-0.133;QD=1.59;ReadPosRankSum=-0.664;SB=0.166 GT:AD:DP:GQ:PL 0/0:18,1:19:9:0,9,364 0/0:18,1:19:28:0,28,528 0/0:24,1:25:17:0,17,437 0/1:19,4:23:74:74,0,391 +chr17 1377943 rs2286873 A G 751.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.675;DB;DP=114;Dels=0.00;FS=4.963;HaplotypeScore=3.8919;MLEAC=4;MLEAF=0.500;MQ=33.54;MQ0=0;MQRankSum=0.656;QD=10.59;ReadPosRankSum=0.233;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:1,13:14:39:492,39,0 0/0:43,0:43:99:0,117,1373 0/1:22,6:28:99:159,0,573 0/1:23,6:29:99:149,0,493 +chr17 1489297 . A C 42.58 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.167;DP=41;Dels=0.00;FS=2.548;HaplotypeScore=2.7311;MLEAC=3;MLEAF=0.375;MQ=31.09;MQ0=0;MQRankSum=-1.169;QD=1.33;ReadPosRankSum=-2.170;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:17:17,0,32 0/1:11,2:13:11:11,0,192 0/0:9,0:9:15:0,15,178 0/1:10,2:12:57:57,0,133 +chr17 1542097 . C T 30.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.959;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.4987;MLEAC=3;MLEAF=0.375;MQ=33.86;MQ0=0;MQRankSum=-1.374;QD=1.05;ReadPosRankSum=0.700;SB=-2.569e-01 GT:AD:DP:GQ:PL 0/1:8,1:9:7:7,0,235 0/1:11,1:12:12:12,0,185 0/0:10,0:10:27:0,27,369 0/1:6,2:8:53:53,0,140 +chr17 1564102 . C A 54.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.002;DP=142;Dels=0.00;FS=46.522;HaplotypeScore=4.5062;MLEAC=2;MLEAF=0.250;MQ=34.91;MQ0=0;MQRankSum=-2.879;QD=0.71;ReadPosRankSum=1.630;SB=-1.264e+00 GT:AD:DP:GQ:PL 0/1:38,5:43:30:30,0,1336 0/0:36,1:37:54:0,54,902 0/1:28,5:33:64:64,0,795 0/0:26,3:29:2:0,2,689 +chr17 1565373 . C T 131.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.439;DP=146;Dels=0.03;FS=34.098;HaplotypeScore=39.0097;MLEAC=3;MLEAF=0.375;MQ=22.02;MQ0=0;MQRankSum=-3.382;QD=1.15;ReadPosRankSum=1.428;SB=2.02 GT:AD:DP:GQ:PL 0/1:28,9:39:61:61,0,241 0/1:22,8:32:77:77,0,129 0/1:30,7:40:37:37,0,324 0/0:27,3:31:21:0,21,241 +chr17 1578835 rs35570313 A G 1362.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.250;DB;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=0.4999;MLEAC=3;MLEAF=0.375;MQ=39.60;MQ0=0;MQRankSum=-5.410;QD=9.21;ReadPosRankSum=3.003;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:36,14:50:99:405,0,1355 0/0:68,0:68:99:0,196,2624 0/1:39,24:63:99:731,0,1419 0/1:24,11:35:99:270,0,813 +chr17 1587828 rs144249808 G C 110.26 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.410;DB;DP=33;Dels=0.00;FS=17.779;HaplotypeScore=6.6642;MLEAC=6;MLEAF=0.750;MQ=19.41;MQ0=0;MQRankSum=2.538;QD=3.34;ReadPosRankSum=-0.775;SB=0.062 GT:AD:DP:GQ:PL 1/1:1,2:3:3:30,3,0 1/1:5,2:7:6:62,6,0 0/1:12,1:13:17:17,0,38 0/1:8,2:10:44:44,0,56 +chr17 1633673 . G A 34.43 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.496;DP=66;Dels=0.00;FS=2.383;HaplotypeScore=5.1197;MLEAC=1;MLEAF=0.125;MQ=30.47;MQ0=0;MQRankSum=-2.450;QD=1.91;ReadPosRankSum=-1.207;SB=0.426 GT:AD:DP:GQ:PL 0/0:14,1:15:17:0,17,410 0/0:17,1:18:16:0,16,427 0/0:14,1:15:5:0,5,340 0/1:14,4:18:70:70,0,280 +chr17 1637074 rs3809871 A G 666.88 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.858;DB;DP=42;Dels=0.00;FS=4.113;HaplotypeScore=0.2458;MLEAC=6;MLEAF=0.750;MQ=27.76;MQ0=0;MQRankSum=0.953;QD=15.88;ReadPosRankSum=-1.234;SB=-1.481e+02 GT:AD:DP:GQ:PL 0/1:7,1:8:3:3,0,179 1/1:2,7:9:15:180,15,0 1/1:1,10:11:24:282,24,0 0/1:2,12:14:6:246,0,6 +chr17 1673104 rs11658342 G A 720.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.518;DB;DP=138;Dels=0.00;FS=1.648;HaplotypeScore=3.4304;MLEAC=3;MLEAF=0.375;MQ=35.09;MQ0=0;MQRankSum=-4.275;QD=7.00;ReadPosRankSum=-0.420;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/0:35,0:35:99:0,99,1329 0/1:28,11:40:99:318,0,629 0/1:27,6:33:99:135,0,721 0/1:18,12:30:99:311,0,454 +chr17 1840701 . C A 54.39 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.954;DP=64;Dels=0.00;FS=12.885;HaplotypeScore=12.6733;MLEAC=1;MLEAF=0.125;MQ=23.15;MQ0=0;MQRankSum=0.718;QD=3.63;ReadPosRankSum=-1.092;SB=-1.122e+01 GT:AD:DP:GQ:PL 0/0:15,0:15:36:0,36,344 0/0:15,0:15:18:0,18,194 0/0:18,1:19:5:0,5,299 0/1:11,4:15:67:90,0,67 +chr17 2219038 . C G 641.54 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.996;DP=50;Dels=0.00;FS=15.247;HaplotypeScore=9.6895;MLEAC=4;MLEAF=0.667;MQ=24.42;MQ0=0;MQRankSum=-0.151;QD=13.37;ReadPosRankSum=1.506;SB=-2.587e-01 GT:AD:DP:GQ:PL 1/1:2,10:12:27:270,27,0 0/1:5,11:16:28:230,0,28 0/1:10,10:20:12:183,0,12 ./. +chr17 2594218 rs2240730 G A 177.84 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.034;DB;DP=15;Dels=0.00;FS=7.160;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=25.26;MQ0=0;MQRankSum=0.678;QD=14.82;ReadPosRankSum=0.896;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:58:58,0,87 ./. 1/1:1,3:4:9:102,9,0 1/1:0,2:2:6:58,6,0 +chr17 2604006 . G T 52.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.917;DP=97;Dels=0.00;FS=42.501;HaplotypeScore=4.1137;MLEAC=3;MLEAF=0.375;MQ=34.81;MQ0=0;MQRankSum=-1.229;QD=0.68;ReadPosRankSum=0.065;SB=-1.089e+00 GT:AD:DP:GQ:PL 0/1:23,3:26:36:36,0,481 0/1:19,2:21:5:5,0,500 0/1:26,4:30:53:53,0,650 0/0:19,1:20:36:0,36,424 +chr17 2604440 . T G 84.75 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.912;DP=78;Dels=0.00;FS=50.171;HaplotypeScore=3.1748;MLEAC=2;MLEAF=0.250;MQ=34.81;MQ0=0;MQRankSum=-1.815;QD=2.02;ReadPosRankSum=0.435;SB=-8.292e-01 GT:AD:DP:GQ:PL 0/1:16,3:19:50:50,0,369 0/0:18,1:19:17:0,17,519 0/0:16,1:17:13:0,13,428 0/1:17,5:23:76:76,0,441 +chr17 2604712 . C T 47.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.465;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0924;MLEAC=1;MLEAF=0.125;MQ=28.18;MQ0=0;MQRankSum=-0.976;QD=2.94;ReadPosRankSum=-0.829;SB=0.020 GT:AD:DP:GQ:PL 0/0:15,1:16:16:0,16,408 0/1:12,4:16:83:83,0,184 0/0:27,0:27:51:0,51,566 0/0:18,1:19:42:0,42,456 +chr17 2883697 . C A,T 33.82 . AC=1,1;AF=0.125,0.125;AN=8;BaseQRankSum=-0.992;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.7287;MLEAC=1,1;MLEAF=0.125,0.125;MQ=30.74;MQ0=0;MQRankSum=-1.857;QD=0.43;ReadPosRankSum=0.237;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:34,3,0:37:50:50,0,433,89,442,531 0/2:37,0,4:41:55:55,97,515,0,417,405 0/0:45,2,0:48:20:0,20,641,63,647,690 0/0:34,0,2:36:14:0,42,494,14,466,463 +chr17 2894656 . G T 257.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.930;DP=156;Dels=0.01;FS=99.163;HaplotypeScore=4.8875;MLEAC=4;MLEAF=0.500;MQ=35.94;MQ0=0;MQRankSum=-2.857;QD=1.65;ReadPosRankSum=0.456;SB=-8.355e-02 GT:AD:DP:GQ:PL 0/1:23,7:30:99:162,0,561 0/1:38,4:43:17:17,0,1065 0/1:43,5:48:45:45,0,1170 0/1:28,6:34:76:76,0,718 +chr17 3119673 rs769426 A G 889.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.252;DB;DP=266;Dels=0.00;FS=4.478;HaplotypeScore=5.1796;MLEAC=3;MLEAF=0.375;MQ=31.62;MQ0=0;MQRankSum=-0.789;QD=4.76;ReadPosRankSum=1.496;SB=-1.870e+02 GT:AD:DP:GQ:PL 0/1:51,14:65:99:365,0,838 0/0:79,0:79:99:0,165,2014 0/1:48,15:63:99:367,0,1162 0/1:47,11:58:99:201,0,822 +chr17 3343692 . T A 115.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.546;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.1411;MLEAC=3;MLEAF=0.375;MQ=27.87;MQ0=0;MQRankSum=-2.062;QD=2.23;ReadPosRankSum=4.013;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,5:22:64:64,0,247 0/1:15,3:18:54:54,0,108 0/1:10,2:12:39:39,0,165 0/0:5,1:6:3:0,3,42 +chr17 3392521 . G A 89.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.296;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=44.3712;MLEAC=3;MLEAF=0.375;MQ=19.64;MQ0=0;MQRankSum=-2.469;QD=1.09;ReadPosRankSum=0.974;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,8:36:68:68,0,177 0/1:23,3:30:48:48,0,191 0/0:43,1:46:2:0,2,212 0/1:11,2:14:14:14,0,58 +chr17 3417123 rs906418 C T 1955.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.815;DB;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=32.20;MQ0=0;MQRankSum=2.510;QD=32.60;ReadPosRankSum=0.780;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:45:553,45,0 1/1:2,10:12:30:368,30,0 1/1:1,17:18:48:570,48,0 1/1:0,14:14:42:504,42,0 +chr17 3475564 rs224550 C T 432.43 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.827;DB;DP=35;Dels=0.00;FS=4.803;HaplotypeScore=0.7440;MLEAC=6;MLEAF=0.750;MQ=29.36;MQ0=0;MQRankSum=1.701;QD=14.41;ReadPosRankSum=1.071;SB=-3.157e+01 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,35 1/1:3,7:10:21:249,21,0 1/1:6,4:10:12:141,12,0 0/1:7,3:10:15:89,0,15 +chr17 3526637 rs150857 C T 1742.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.378;DB;DP=184;Dels=0.02;FS=10.176;HaplotypeScore=1.9071;MLEAC=3;MLEAF=0.375;MQ=39.73;MQ0=0;MQRankSum=-1.044;QD=13.01;ReadPosRankSum=0.190;SB=-1.870e+02 GT:AD:DP:GQ:PL 0/1:25,17:42:99:588,0,731 0/0:50,0:50:99:0,138,1899 0/1:34,21:55:99:685,0,1066 0/1:19,15:34:99:513,0,506 +chr17 3561316 . G A 181.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.566;DP=93;Dels=0.00;FS=28.449;HaplotypeScore=5.0218;MLEAC=4;MLEAF=0.500;MQ=29.33;MQ0=0;MQRankSum=-1.655;QD=1.95;ReadPosRankSum=0.571;SB=-1.578e-02 GT:AD:DP:GQ:PL 0/1:13,4:18:85:85,0,204 0/1:19,5:24:35:35,0,215 0/1:26,5:31:74:74,0,585 0/1:17,2:20:30:30,0,230 +chr17 3564084 rs760274 T C 70.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.482;DB;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.1446;MLEAC=3;MLEAF=0.375;MQ=32.85;MQ0=0;MQRankSum=-1.226;QD=1.95;ReadPosRankSum=1.775;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:3:3,0,267 0/0:7,0:7:18:0,18,200 0/1:8,3:11:77:77,0,221 0/1:12,3:15:31:31,0,256 +chr17 3704301 . A T 333.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.011;DP=67;Dels=0.01;FS=8.007;HaplotypeScore=3.9604;MLEAC=4;MLEAF=0.500;MQ=25.40;MQ0=0;MQRankSum=2.356;QD=4.98;ReadPosRankSum=0.416;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,5:16:99:120,0,173 0/1:15,2:18:53:53,0,119 0/1:16,3:19:54:54,0,99 0/1:7,6:13:56:149,0,56 +chr17 3721741 . C A 54.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.472;DP=114;Dels=0.02;FS=49.717;HaplotypeScore=11.5510;MLEAC=3;MLEAF=0.375;MQ=29.91;MQ0=0;MQRankSum=-2.124;QD=0.66;ReadPosRankSum=-0.077;SB=-3.530e+00 GT:AD:DP:GQ:PL 0/1:25,2:29:15:15,0,455 0/1:31,2:33:16:16,0,434 0/0:29,0:30:42:0,42,459 0/1:15,5:20:66:66,0,267 +chr17 3831306 rs113298390 C G 282.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.738;DB;DP=98;Dels=0.04;FS=44.239;HaplotypeScore=6.3866;MLEAC=4;MLEAF=0.500;MQ=30.59;MQ0=0;MQRankSum=-2.130;QD=2.88;ReadPosRankSum=-1.295;SB=-1.188e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:93:93,0,317 0/1:19,3:22:48:48,0,376 0/1:23,6:29:99:102,0,460 0/1:21,4:26:82:82,0,330 +chr17 3831430 rs41283383 C T 237.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.658;DB;DP=124;Dels=0.00;FS=10.195;HaplotypeScore=1.2355;MLEAC=1;MLEAF=0.125;MQ=32.23;MQ0=0;MQRankSum=-0.714;QD=10.82;ReadPosRankSum=0.541;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:12,10:22:99:274,0,348 0/0:32,0:33:84:0,84,986 0/0:32,0:32:75:0,75,944 0/0:37,0:37:99:0,105,1219 +chr17 3850713 . A T 310.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.286;DP=113;Dels=0.00;FS=14.673;HaplotypeScore=0.9940;MLEAC=3;MLEAF=0.375;MQ=28.11;MQ0=0;MQRankSum=3.407;QD=3.84;ReadPosRankSum=-0.721;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:77:96,0,77 0/0:32,0:32:72:0,72,677 0/1:27,4:32:76:76,0,415 0/1:23,7:30:99:182,0,228 +chr17 3850816 . C G 42.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.036;DP=103;Dels=0.00;FS=36.049;HaplotypeScore=0.2492;MLEAC=2;MLEAF=0.250;MQ=31.49;MQ0=0;MQRankSum=0.870;QD=0.79;ReadPosRankSum=-1.082;SB=0.709 GT:AD:DP:GQ:PL 0/1:22,3:25:41:41,0,463 0/0:22,0:22:57:0,57,681 0/1:26,3:29:43:43,0,637 0/0:27,0:27:69:0,69,778 +chr17 4027047 rs7225521 A G 292.44 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.751;DB;DP=11;Dels=0.00;FS=12.632;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=33.63;MQ0=0;MQRankSum=0.751;QD=32.49;ReadPosRankSum=-0.751;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:9:123,9,0 1/1:1,4:5:12:165,12,0 1/1:0,1:1:3:41,3,0 ./. +chr17 4046921 . G C 47.44 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.473;DP=57;Dels=0.04;FS=0.000;HaplotypeScore=11.7942;MLEAC=2;MLEAF=0.250;MQ=23.02;MQ0=0;MQRankSum=1.349;QD=1.48;ReadPosRankSum=-0.648;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:18:29:29,0,160 0/1:11,3:14:38:59,0,38 0/0:13,0:13:12:0,12,150 0/0:8,1:10:6:0,6,66 +chr17 4076629 . C A 144.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.118;DP=66;Dels=0.00;FS=2.426;HaplotypeScore=6.0145;MLEAC=3;MLEAF=0.375;MQ=33.50;MQ0=0;MQRankSum=-2.164;QD=2.90;ReadPosRankSum=-0.424;SB=-7.051e-03 GT:AD:DP:GQ:PL 0/1:11,2:13:39:39,0,253 0/1:14,4:18:79:79,0,286 0/0:16,0:16:30:0,30,386 0/1:14,5:19:70:70,0,294 +chr17 4077159 . G A 205.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.911;DP=92;Dels=0.02;FS=5.388;HaplotypeScore=10.1615;MLEAC=4;MLEAF=0.500;MQ=26.95;MQ0=0;MQRankSum=-3.943;QD=2.23;ReadPosRankSum=2.651;SB=-1.296e-02 GT:AD:DP:GQ:PL 0/1:13,8:21:99:101,0,215 0/1:18,5:23:32:32,0,355 0/1:21,6:27:86:86,0,314 0/1:15,4:19:29:29,0,187 +chr17 4495614 . G T 177.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.831;DP=80;Dels=0.00;FS=2.769;HaplotypeScore=8.3692;MLEAC=4;MLEAF=0.500;MQ=23.98;MQ0=0;MQRankSum=-2.266;QD=2.22;ReadPosRankSum=5.205;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,6:21:51:51,0,156 0/1:17,6:23:55:55,0,173 0/1:16,4:20:83:83,0,227 0/1:12,4:16:31:31,0,132 +chr17 4497231 . C A 171.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.371;DP=66;Dels=0.00;FS=2.532;HaplotypeScore=4.1894;MLEAC=4;MLEAF=0.500;MQ=26.06;MQ0=0;MQRankSum=-1.371;QD=2.59;ReadPosRankSum=0.044;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,1:14:3:3,0,206 0/1:15,2:17:41:41,0,144 0/1:14,2:16:30:30,0,257 0/1:11,8:19:85:138,0,85 +chr17 4539330 . T G 94.48 . AC=3;AF=0.750;AN=4;BaseQRankSum=-1.495;DP=10;Dels=0.00;FS=17.482;HaplotypeScore=1.3233;MLEAC=3;MLEAF=0.750;MQ=19.34;MQ0=0;MQRankSum=1.495;QD=11.81;ReadPosRankSum=-0.922;SB=0.620 GT:AD:DP:GQ:PL 0/1:2,3:5:10:71,0,10 ./. 1/1:1,2:3:6:59,6,0 ./. +chr17 4622638 rs1045280 C T 1281.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.083;DB;DP=160;Dels=0.01;FS=7.338;HaplotypeScore=6.4082;MLEAC=4;MLEAF=0.500;MQ=32.36;MQ0=0;MQRankSum=-3.156;QD=8.01;ReadPosRankSum=0.524;SB=-5.340e+02 GT:AD:DP:GQ:PL 0/1:28,18:46:99:439,0,812 0/1:24,13:37:99:295,0,717 0/1:29,8:37:99:150,0,861 0/1:20,19:39:99:440,0,465 +chr17 4645013 . G C 73.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.817;DP=150;Dels=0.01;FS=4.473;HaplotypeScore=15.2584;MLEAC=3;MLEAF=0.375;MQ=25.99;MQ0=0;MQRankSum=-2.474;QD=0.64;ReadPosRankSum=3.441;SB=-2.724e-02 GT:AD:DP:GQ:PL 0/1:42,5:47:25:25,0,646 0/0:29,2:34:36:0,36,602 0/1:35,5:40:47:47,0,668 0/1:21,6:27:45:45,0,328 +chr17 4711480 . C G 52.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.055;DP=115;Dels=0.01;FS=22.807;HaplotypeScore=1.2186;MLEAC=3;MLEAF=0.375;MQ=26.34;MQ0=0;MQRankSum=-1.328;QD=0.67;ReadPosRankSum=1.898;SB=1.13 GT:AD:DP:GQ:PL 0/1:19,2:21:16:16,0,288 0/1:27,3:30:31:31,0,352 0/0:34,2:36:22:0,22,698 0/1:24,3:27:49:49,0,286 +chr17 4713194 . T A 70.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.100;DP=155;Dels=0.00;FS=108.419;HaplotypeScore=6.3542;MLEAC=3;MLEAF=0.375;MQ=36.40;MQ0=0;MQRankSum=-4.170;QD=0.63;ReadPosRankSum=1.220;SB=-3.244e+00 GT:AD:DP:GQ:PL 0/0:39,4:43:5:0,5,1182 0/1:37,6:43:47:47,0,1045 0/1:33,3:36:2:2,0,1002 0/1:28,5:33:61:61,0,784 +chr17 4722299 rs2326097 T C 412.42 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.395;DB;DP=57;Dels=0.04;FS=12.061;HaplotypeScore=4.3444;MLEAC=8;MLEAF=1.00;MQ=14.98;MQ0=0;MQRankSum=5.125;QD=7.24;ReadPosRankSum=1.322;SB=-5.488e+01 GT:AD:DP:GQ:PL 1/1:8,7:15:15:142,15,0 1/1:11,5:17:9:78,9,0 1/1:7,3:11:9:99,9,0 1/1:5,7:12:12:132,12,0 +chr17 4794930 . T G 46.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.067;DP=50;Dels=0.00;FS=57.565;HaplotypeScore=1.7090;MLEAC=3;MLEAF=0.375;MQ=31.49;MQ0=0;MQRankSum=-4.273;QD=1.20;ReadPosRankSum=1.296;SB=-2.179e+00 GT:AD:DP:GQ:PL 0/0:11,0:11:30:0,30,354 0/1:8,5:13:32:32,0,217 0/1:8,5:13:24:24,0,248 0/1:11,2:13:34:34,0,252 +chr17 4805946 . G C 90.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.655;DP=323;Dels=0.00;FS=84.451;HaplotypeScore=3.4331;MLEAC=2;MLEAF=0.250;MQ=37.66;MQ0=0;MQRankSum=-3.331;QD=0.54;ReadPosRankSum=0.638;SB=-1.004e+00 GT:AD:DP:GQ:PL 0/0:68,4:72:36:0,36,1955 0/1:70,6:76:15:15,0,2060 0/1:82,10:92:99:116,0,2201 0/0:81,2:83:99:0,148,2737 +chr17 4856376 rs238238 A G 986.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.995;DB;DP=90;Dels=0.00;FS=2.387;HaplotypeScore=3.6402;MLEAC=5;MLEAF=0.625;MQ=28.95;MQ0=0;MQRankSum=0.981;QD=10.96;ReadPosRankSum=2.072;SB=-4.518e+02 GT:AD:DP:GQ:PL 1/1:12,10:22:30:346,30,0 0/1:13,7:20:76:202,0,76 0/1:17,11:28:99:327,0,123 0/1:13,6:20:99:157,0,129 +chr17 4875626 . G T 49.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.709;DP=144;Dels=0.01;FS=9.274;HaplotypeScore=3.7168;MLEAC=2;MLEAF=0.250;MQ=29.82;MQ0=0;MQRankSum=3.003;QD=0.77;ReadPosRankSum=-1.617;SB=2.00 GT:AD:DP:GQ:PL 0/1:31,4:35:51:51,0,736 0/0:30,1:31:25:0,25,597 0/0:46,2:48:31:0,31,811 0/1:26,3:29:40:40,0,531 +chr17 4903988 . A C 38.35 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.665;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=8.8285;MLEAC=2;MLEAF=0.250;MQ=24.48;MQ0=0;MQRankSum=-0.485;QD=0.82;ReadPosRankSum=2.988;SB=0.877 GT:AD:DP:GQ:PL 0/0:16,1:17:4:0,4,292 0/1:20,3:23:35:35,0,157 0/0:20,1:21:6:0,6,281 0/1:20,3:23:43:43,0,192 +chr17 4937540 . G T 162.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.218;DP=103;Dels=0.00;FS=22.989;HaplotypeScore=2.5027;MLEAC=3;MLEAF=0.375;MQ=32.09;MQ0=0;MQRankSum=-0.334;QD=2.03;ReadPosRankSum=0.517;SB=-5.557e-01 GT:AD:DP:GQ:PL 0/0:22,1:23:5:0,5,404 0/1:23,3:26:55:55,0,298 0/1:26,5:31:99:126,0,421 0/1:21,2:23:23:23,0,414 +chr17 5036161 rs73976312 G A 37.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.501;DB;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=6.1082;MLEAC=4;MLEAF=0.500;MQ=12.18;MQ0=0;MQRankSum=2.759;QD=0.18;ReadPosRankSum=-0.807;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:54,3:57:7:7,0,387 0/1:51,3:54:10:10,0,70 0/1:51,1:52:17:22,0,17 0/1:49,2:51:40:40,0,170 +chr17 5276605 . T A 67.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.930;DP=121;Dels=0.00;FS=55.576;HaplotypeScore=0.4934;MLEAC=1;MLEAF=0.125;MQ=40.54;MQ0=0;MQRankSum=-1.469;QD=1.84;ReadPosRankSum=2.376;SB=-1.757e+00 GT:AD:DP:GQ:PL 0/1:32,5:37:99:104,0,916 0/0:29,0:29:72:0,72,946 0/0:41,1:42:74:0,74,1428 0/0:13,0:13:36:0,36,479 +chr17 5291276 rs112437444 AAAAT A 380.95 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.429;DB;DP=70;FS=0.000;HaplotypeScore=11.4509;MLEAC=1;MLEAF=0.125;MQ=28.29;MQ0=0;MQRankSum=-2.386;QD=19.05;RPA=2,1;RU=AAAT;ReadPosRankSum=2.118;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:12,7:19:99:426,0,518 0/0:19,0:15:45:0,45,958 0/0:17,0:13:33:0,33,728 0/0:13,0:12:30:0,30,673 +chr17 5359295 . A G 67.06 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.264;DP=27;Dels=0.04;FS=5.842;HaplotypeScore=3.3314;MLEAC=4;MLEAF=0.500;MQ=16.81;MQ0=0;MQRankSum=2.372;QD=5.16;ReadPosRankSum=-1.107;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:25:27,0,25 0/0:6,1:7:3:0,3,22 0/0:6,0:6:3:0,3,27 1/1:4,3:7:9:83,9,0 +chr17 6371401 . A C 72.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.027;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2239;MLEAC=3;MLEAF=0.375;MQ=24.65;MQ0=0;MQRankSum=-1.149;QD=1.50;ReadPosRankSum=-0.297;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:31:31,0,194 0/1:11,2:13:12:12,0,156 0/0:19,0:19:33:0,33,371 0/1:15,5:20:46:72,0,46 +chr17 6376069 . G A 187.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.398;DP=54;Dels=0.00;FS=57.565;HaplotypeScore=7.5534;MLEAC=4;MLEAF=0.500;MQ=26.13;MQ0=0;MQRankSum=0.372;QD=3.47;ReadPosRankSum=0.038;SB=-2.354e+00 GT:AD:DP:GQ:PL 0/1:7,4:11:99:100,0,109 0/1:14,3:17:23:23,0,251 0/1:11,3:14:60:60,0,176 0/1:10,2:12:47:47,0,87 +chr17 6441452 . A T 100.09 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.786;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=2.1847;MLEAC=4;MLEAF=0.500;MQ=29.62;MQ0=0;MQRankSum=-2.443;QD=1.61;ReadPosRankSum=1.096;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:2:2,0,338 0/1:8,2:10:37:37,0,91 0/1:20,5:25:93:93,0,398 0/1:7,2:9:8:8,0,139 +chr17 6524162 . C G 119.46 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.396;DP=186;Dels=0.02;FS=102.086;HaplotypeScore=5.3900;MLEAC=1;MLEAF=0.125;MQ=32.58;MQ0=0;MQRankSum=-2.278;QD=2.65;ReadPosRankSum=-1.145;SB=-6.880e+00 GT:AD:DP:GQ:PL 0/0:43,2:45:62:0,62,1345 0/0:46,3:49:4:0,4,1051 0/0:41,4:45:28:0,28,1040 0/1:34,10:44:99:155,0,933 +chr17 6560638 . G T 64.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.164;DP=59;Dels=0.02;FS=2.428;HaplotypeScore=5.3133;MLEAC=2;MLEAF=0.250;MQ=28.13;MQ0=0;MQRankSum=-0.313;QD=2.09;ReadPosRankSum=-0.821;SB=0.046 GT:AD:DP:GQ:PL 0/0:9,0:9:15:0,15,163 0/0:17,1:18:13:0,13,417 0/1:12,2:14:26:26,0,314 0/1:14,3:17:56:80,0,56 +chr17 6563468 . T C 132.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.191;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.2951;MLEAC=4;MLEAF=0.500;MQ=21.47;MQ0=0;MQRankSum=1.780;QD=1.47;ReadPosRankSum=2.571;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,1:20:23:23,0,54 0/1:22,3:25:21:21,0,279 0/1:19,5:24:74:96,0,74 0/1:18,3:21:35:35,0,153 +chr17 6719328 . G C 39.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.582;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3211;MLEAC=3;MLEAF=0.375;MQ=26.99;MQ0=0;MQRankSum=-0.326;QD=0.80;ReadPosRankSum=1.331;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:62:62,0,108 0/1:13,1:14:9:9,0,98 0/1:16,1:17:10:10,0,161 0/0:14,0:14:15:0,15,168 +chr17 6802834 rs311756 C G 160.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.591;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7381;MLEAC=4;MLEAF=0.500;MQ=29.93;MQ0=0;MQRankSum=0.530;QD=10.71;ReadPosRankSum=0.412;SB=-6.286e+01 GT:AD:DP:GQ:PL 1/1:1,2:3:6:78,6,0 0/0:2,0:2:6:0,6,76 0/1:3,3:6:59:92,0,59 0/1:5,1:6:35:35,0,36 +chr17 7107274 . A T 34.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.244;DP=80;Dels=0.00;FS=9.805;HaplotypeScore=2.6203;MLEAC=2;MLEAF=0.250;MQ=31.95;MQ0=0;MQRankSum=-3.538;QD=0.96;ReadPosRankSum=1.308;SB=0.686 GT:AD:DP:GQ:PL 0/0:17,1:18:24:0,24,606 0/1:17,3:20:35:35,0,442 0/0:23,2:26:15:0,15,744 0/1:12,4:16:41:41,0,257 +chr17 7154599 . C T 31.28 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.296;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=16.24;MQ0=0;MQRankSum=2.166;QD=7.82;ReadPosRankSum=-0.546;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:38,3,0 ./. 0/0:6,1:7:3:0,3,24 1/1:0,1:1:3:31,3,0 +chr17 7162118 . G A 236.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.561;DP=143;Dels=0.00;FS=57.091;HaplotypeScore=1.2483;MLEAC=3;MLEAF=0.375;MQ=35.99;MQ0=0;MQRankSum=-6.552;QD=2.28;ReadPosRankSum=-1.848;SB=0.748 GT:AD:DP:GQ:PL 0/1:27,8:35:99:109,0,704 0/1:31,5:36:24:24,0,973 0/0:37,2:39:24:0,24,969 0/1:26,7:33:99:147,0,754 +chr17 7164123 . A G 181.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.890;DP=138;Dels=0.02;FS=18.098;HaplotypeScore=10.5391;MLEAC=2;MLEAF=0.250;MQ=23.88;MQ0=0;MQRankSum=2.906;QD=2.84;ReadPosRankSum=-3.753;SB=-3.164e+01 GT:AD:DP:GQ:PL 0/0:33,2:35:11:0,11,516 0/1:33,4:37:94:94,0,297 0/0:35,2:37:48:0,48,475 0/1:19,5:26:99:129,0,128 +chr17 7217257 . C T 84.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.831;DP=113;Dels=0.00;FS=48.187;HaplotypeScore=2.9454;MLEAC=3;MLEAF=0.375;MQ=22.86;MQ0=0;MQRankSum=2.631;QD=1.04;ReadPosRankSum=-1.489;SB=-4.444e-01 GT:AD:DP:GQ:PL 0/0:29,1:31:18:0,18,180 0/1:27,1:28:4:4,0,164 0/1:28,3:31:50:50,0,156 0/1:19,4:23:54:72,0,54 +chr17 7292380 . C G 47.29 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.182;DP=19;Dels=0.00;FS=2.447;HaplotypeScore=1.6506;MLEAC=3;MLEAF=0.375;MQ=22.20;MQ0=0;MQRankSum=1.395;QD=3.64;ReadPosRankSum=-1.152;SB=4.92 GT:AD:DP:GQ:PL 0/0:4,1:5:3:0,3,26 0/1:5,2:7:25:57,0,25 0/0:1,0:1:3:0,3,44 0/1:5,1:6:26:29,0,26 +chr17 7324273 . T G 239.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.143;DP=185;Dels=0.01;FS=62.984;HaplotypeScore=12.6929;MLEAC=4;MLEAF=0.500;MQ=35.15;MQ0=0;MQRankSum=-6.607;QD=1.29;ReadPosRankSum=4.115;SB=-6.805e-01 GT:AD:DP:GQ:PL 0/1:40,11:51:99:164,0,1094 0/1:38,9:47:38:38,0,1076 0/1:47,7:54:7:7,0,1522 0/1:23,7:31:72:72,0,607 +chr17 7329738 . A G 92.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.142;DP=69;Dels=0.00;FS=46.554;HaplotypeScore=7.0890;MLEAC=4;MLEAF=0.500;MQ=27.93;MQ0=0;MQRankSum=-1.124;QD=1.34;ReadPosRankSum=0.949;SB=-2.357e+00 GT:AD:DP:GQ:PL 0/1:16,2:18:1:1,0,256 0/1:17,3:20:30:30,0,260 0/1:14,2:17:46:46,0,146 0/1:11,3:14:56:56,0,162 +chr17 7357607 rs76001008 C T 629.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.206;DB;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=1.3934;MLEAC=1;MLEAF=0.125;MQ=35.56;MQ0=0;MQRankSum=-5.258;QD=14.00;ReadPosRankSum=-0.405;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,114,1461 0/1:21,24:45:99:666,0,642 0/0:49,0:49:99:0,144,1887 0/0:51,0:51:99:0,147,1918 +chr17 7415941 . C A 993.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.835;DP=153;Dels=0.01;FS=134.812;HaplotypeScore=9.5410;MLEAC=4;MLEAF=0.500;MQ=31.42;MQ0=0;MQRankSum=1.577;QD=6.49;ReadPosRankSum=3.054;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,13:43:99:373,0,429 0/1:32,12:45:99:338,0,505 0/1:29,6:35:99:163,0,508 0/1:22,7:29:99:162,0,319 +chr17 7463495 . C T 837.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.246;DP=196;Dels=0.03;FS=174.599;HaplotypeScore=13.8308;MLEAC=4;MLEAF=0.500;MQ=31.94;MQ0=0;MQRankSum=-4.687;QD=4.27;ReadPosRankSum=4.163;SB=-9.500e-04 GT:AD:DP:GQ:PL 0/1:43,8:51:99:184,0,687 0/1:41,11:52:99:214,0,690 0/1:35,13:48:99:261,0,690 0/1:29,11:40:99:221,0,446 +chr17 7478402 rs78414518 C G 1619.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.225;DB;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.4978;MLEAC=4;MLEAF=0.500;MQ=37.35;MQ0=0;MQRankSum=-2.434;QD=21.89;ReadPosRankSum=1.800;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:40,0:40:93:0,93,1278 1/1:1,27:28:81:1075,81,0 0/1:14,14:28:99:471,0,419 0/1:14,4:18:99:122,0,340 +chr17 7480189 . T A 164.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.611;DP=52;Dels=0.00;FS=5.591;HaplotypeScore=9.8698;MLEAC=4;MLEAF=0.500;MQ=24.69;MQ0=0;MQRankSum=-0.581;QD=3.17;ReadPosRankSum=1.713;SB=-3.099e+01 GT:AD:DP:GQ:PL 0/1:11,2:13:44:44,0,68 0/1:12,3:15:35:35,0,113 0/1:12,5:17:78:78,0,234 0/1:4,3:7:50:50,0,53 +chr17 7578115 rs1625895 T C 696.94 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.055;DB;DP=40;Dels=0.03;FS=11.779;HaplotypeScore=1.3508;MLEAC=6;MLEAF=0.750;MQ=32.52;MQ0=0;MQRankSum=0.458;QD=17.42;ReadPosRankSum=2.824;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,6:9:86:203,0,86 0/1:8,4:12:99:118,0,280 1/1:3,6:9:18:235,18,0 1/1:3,6:9:18:187,18,0 +chr17 7681811 . C T 52.38 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.350;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=4.5853;MLEAC=6;MLEAF=0.750;MQ=17.82;MQ0=0;MQRankSum=2.350;QD=2.10;ReadPosRankSum=-1.150;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,1:4:3:26,3,0 0/1:9,1:10:18:18,0,75 0/1:6,1:7:18:23,0,18 1/1:3,1:4:3:27,3,0 +chr17 7708227 . C T 355.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.885;DP=114;Dels=0.00;FS=2.374;HaplotypeScore=1.9611;MLEAC=4;MLEAF=0.500;MQ=27.77;MQ0=0;MQRankSum=2.688;QD=3.12;ReadPosRankSum=-1.315;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,7:28:99:182,0,257 0/1:28,5:33:99:109,0,309 0/1:28,3:31:52:52,0,320 0/1:19,3:22:55:55,0,173 +chr17 7760626 . G A 31.38 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.156;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7301;MLEAC=2;MLEAF=0.333;MQ=25.88;MQ0=0;MQRankSum=0.955;QD=0.92;ReadPosRankSum=1.859;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:24:24,0,53 ./. 0/1:20,2:22:46:46,0,88 0/0:12,0:12:18:0,18,164 +chr17 7794188 . G T 31.71 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.395;DP=118;Dels=0.00;FS=2.305;HaplotypeScore=6.5617;MLEAC=3;MLEAF=0.375;MQ=25.25;MQ0=0;MQRankSum=0.490;QD=0.35;ReadPosRankSum=0.395;SB=-1.678e+00 GT:AD:DP:GQ:PL 0/1:32,2:34:10:10,0,394 0/0:28,0:28:42:0,42,425 0/1:24,2:26:7:7,0,327 0/1:27,3:30:56:56,0,120 +chr17 7797035 . G A 41.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.742;DP=268;Dels=0.00;FS=21.281;HaplotypeScore=18.2605;MLEAC=1;MLEAF=0.125;MQ=32.27;MQ0=0;MQRankSum=-0.154;QD=0.69;ReadPosRankSum=0.468;SB=-1.179e-02 GT:AD:DP:GQ:PL 0/0:73,0:73:99:0,168,1947 0/0:65,1:66:99:0,108,1460 0/0:67,1:68:99:0,121,1873 0/1:55,6:61:78:78,0,1093 +chr17 7803443 . T A 67.90 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.750;DP=38;Dels=0.00;FS=12.399;HaplotypeScore=0.7405;MLEAC=4;MLEAF=0.500;MQ=29.24;MQ0=0;MQRankSum=-0.619;QD=1.79;ReadPosRankSum=3.419;SB=-2.387e-01 GT:AD:DP:GQ:PL 0/1:9,2:11:40:40,0,236 0/1:6,1:7:20:20,0,84 0/1:10,2:12:39:39,0,112 0/1:7,1:8:11:11,0,119 +chr17 7810697 . A C 193.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.372;DP=81;Dels=0.01;FS=3.109;HaplotypeScore=4.4169;MLEAC=4;MLEAF=0.500;MQ=28.02;MQ0=0;MQRankSum=-1.523;QD=2.39;ReadPosRankSum=0.993;SB=-9.859e+01 GT:AD:DP:GQ:PL 0/1:16,3:19:39:39,0,187 0/1:13,3:16:27:27,0,158 0/1:23,5:29:99:105,0,374 0/1:13,3:16:65:65,0,100 +chr17 7812002 . C G 218.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-7.250;DP=199;Dels=0.00;FS=191.087;HaplotypeScore=6.7101;MLEAC=4;MLEAF=0.500;MQ=29.76;MQ0=0;MQRankSum=-5.713;QD=1.29;ReadPosRankSum=-1.557;SB=-2.127e+00 GT:AD:DP:GQ:PL 0/1:46,11:57:85:85,0,1241 0/1:42,11:53:99:107,0,969 0/1:51,9:60:67:67,0,1150 0/0:25,4:29:1:0,1,652 +chr17 7842959 . G A 73.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.453;DP=99;Dels=0.00;FS=87.806;HaplotypeScore=2.2679;MLEAC=3;MLEAF=0.375;MQ=33.89;MQ0=0;MQRankSum=-2.554;QD=1.09;ReadPosRankSum=1.791;SB=-6.379e-01 GT:AD:DP:GQ:PL 0/1:18,3:22:19:19,0,566 0/1:18,5:23:78:78,0,419 0/0:29,2:31:22:0,22,844 0/1:21,2:23:20:20,0,493 +chr17 7907205 . G C 33.15 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.116;DP=50;Dels=0.04;FS=0.000;HaplotypeScore=19.1611;MLEAC=2;MLEAF=0.250;MQ=21.63;MQ0=0;MQRankSum=1.588;QD=1.27;ReadPosRankSum=0.271;SB=32.41 GT:AD:DP:GQ:PL 0/0:10,0:12:12:0,12,99 0/0:11,0:11:3:0,3,23 0/1:10,2:14:44:44,0,74 0/1:8,2:11:21:26,0,21 +chr17 7910456 . A C 46.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.540;DP=118;Dels=0.00;FS=9.631;HaplotypeScore=2.6738;MLEAC=2;MLEAF=0.250;MQ=35.54;MQ0=0;MQRankSum=-0.132;QD=0.88;ReadPosRankSum=1.302;SB=-8.995e-03 GT:AD:DP:GQ:PL 0/0:29,1:30:44:0,44,814 0/0:35,0:35:69:0,69,812 0/1:29,4:33:40:40,0,604 0/1:17,3:20:48:48,0,328 +chr17 7983799 rs2304907 A G 320.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.390;DB;DP=132;Dels=0.01;FS=1.168;HaplotypeScore=0.4963;MLEAC=1;MLEAF=0.125;MQ=38.22;MQ0=0;MQRankSum=-1.289;QD=12.84;ReadPosRankSum=1.735;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:14,11:25:99:357,0,495 0/0:38,0:38:99:0,114,1452 0/0:41,1:42:79:0,79,1451 0/0:26,0:26:69:0,69,928 +chr17 7983969 rs2304908 G C 375.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.792;DB;DP=192;Dels=0.00;FS=1.252;HaplotypeScore=1.2880;MLEAC=1;MLEAF=0.125;MQ=34.28;MQ0=0;MQRankSum=-2.204;QD=8.17;ReadPosRankSum=1.488;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:30,16:46:99:412,0,881 0/0:51,0:51:99:0,144,1815 0/0:54,0:54:99:0,150,1915 0/0:41,0:41:99:0,111,1332 +chr17 8027458 . C G 144.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.746;DP=57;Dels=0.00;FS=5.235;HaplotypeScore=2.3208;MLEAC=4;MLEAF=0.500;MQ=26.66;MQ0=0;MQRankSum=-1.584;QD=2.54;ReadPosRankSum=2.802;SB=-9.955e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:13:13,0,143 0/1:12,3:15:57:57,0,163 0/1:14,5:19:71:71,0,272 0/1:8,3:11:46:46,0,46 +chr17 8051074 . T C 103 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.760;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7682;MLEAC=1;MLEAF=0.125;MQ=30.77;MQ0=0;MQRankSum=-0.182;QD=7.92;ReadPosRankSum=0.887;SB=-3.066e-03 GT:AD:DP:GQ:PL 0/1:7,6:13:99:139,0,122 0/0:14,1:15:24:0,24,275 0/0:22,0:22:48:0,48,525 0/0:17,0:17:30:0,30,331 +chr17 8052791 . C T 66.51 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.781;DP=41;Dels=0.00;FS=2.507;HaplotypeScore=3.8307;MLEAC=4;MLEAF=0.500;MQ=23.56;MQ0=0;MQRankSum=2.575;QD=1.62;ReadPosRankSum=-2.822;SB=-1.563e+00 GT:AD:DP:GQ:PL 0/1:12,1:13:2:2,0,214 0/1:5,1:7:24:24,0,99 0/1:8,2:11:36:36,0,165 0/1:7,2:10:14:45,0,14 +chr17 8076911 rs11655582 A G 1928.07 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.861;DB;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.1716;MLEAC=8;MLEAF=1.00;MQ=30.38;MQ0=0;MQRankSum=0.797;QD=28.35;ReadPosRankSum=2.892;SB=-4.231e+02 GT:AD:DP:GQ:PL 1/1:2,12:14:36:419,36,0 1/1:2,18:20:48:550,48,0 1/1:1,21:22:60:663,60,0 0/1:1,11:12:0:334,0,0 +chr17 8076916 rs11650713 C T 1267.27 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.172;DB;DP=63;Dels=0.00;FS=3.182;HaplotypeScore=0.4468;MLEAC=6;MLEAF=0.750;MQ=32.37;MQ0=0;MQRankSum=-0.698;QD=20.12;ReadPosRankSum=2.250;SB=-1.971e+02 GT:AD:DP:GQ:PL 0/1:11,2:13:36:36,0,363 0/1:10,9:19:99:288,0,164 1/1:1,19:20:54:636,54,0 1/1:1,10:11:10:353,10,0 +chr17 8158273 rs6503094 A G 644.21 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.614;DB;DP=34;Dels=0.00;FS=14.624;HaplotypeScore=2.5615;MLEAC=8;MLEAF=1.00;MQ=25.08;MQ0=0;MQRankSum=1.614;QD=18.95;ReadPosRankSum=-1.135;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,8:10:18:196,18,0 1/1:2,8:10:21:224,21,0 1/1:1,7:8:15:177,15,0 1/1:1,5:6:9:86,9,0 +chr17 8168906 . C A 575.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.707;DP=162;Dels=0.01;FS=136.926;HaplotypeScore=5.5325;MLEAC=4;MLEAF=0.500;MQ=32.94;MQ0=0;MQRankSum=-6.512;QD=3.55;ReadPosRankSum=3.643;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,7:34:99:120,0,602 0/1:20,11:32:99:246,0,458 0/1:36,11:47:99:169,0,919 0/1:39,8:47:83:83,0,1116 +chr17 8216865 . G T 414.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.567;DP=244;Dels=0.00;FS=260.479;HaplotypeScore=4.9382;MLEAC=4;MLEAF=0.500;MQ=34.15;MQ0=0;MQRankSum=-2.448;QD=1.70;ReadPosRankSum=1.577;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:46,8:54:99:106,0,1394 0/1:54,11:65:99:188,0,1478 0/1:56,8:64:79:79,0,1657 0/1:51,10:61:84:84,0,1546 +chr17 8221608 . A C 155.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.416;DP=115;Dels=0.00;FS=4.654;HaplotypeScore=11.9815;MLEAC=3;MLEAF=0.375;MQ=22.29;MQ0=0;MQRankSum=2.107;QD=1.73;ReadPosRankSum=0.405;SB=-1.222e-02 GT:AD:DP:GQ:PL 0/0:24,1:25:15:0,15,168 0/1:31,2:33:39:39,0,187 0/1:24,6:31:99:119,0,227 0/1:23,3:26:41:41,0,119 +chr17 8396068 . G T 112.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.424;DP=106;Dels=0.00;FS=15.262;HaplotypeScore=1.4632;MLEAC=3;MLEAF=0.375;MQ=32.21;MQ0=0;MQRankSum=-0.960;QD=1.43;ReadPosRankSum=1.269;SB=0.026 GT:AD:DP:GQ:PL 0/1:31,4:35:38:38,0,666 0/1:23,2:25:16:16,0,426 0/0:26,1:27:33:0,33,693 0/1:15,4:19:99:102,0,123 +chr17 8451744 rs148794421 GA G 1224.14 . AC=7;AF=0.875;AN=8;BaseQRankSum=-2.824;DB;DP=76;FS=0.000;HaplotypeScore=14.9029;MLEAC=7;MLEAF=0.875;MQ=23.08;MQ0=0;MQRankSum=-0.302;QD=16.11;RPA=10,9;RU=A;ReadPosRankSum=3.586;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:9,14:19:7:362,7,0 1/1:6,11:16:4:331,4,0 1/1:7,16:21:15:446,15,0 0/1:3,7:8:11:136,0,11 +chr17 8655571 . A T 76 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.286;DP=114;Dels=0.01;FS=32.698;HaplotypeScore=3.9852;MLEAC=4;MLEAF=0.500;MQ=15.64;MQ0=0;MQRankSum=2.684;QD=0.90;ReadPosRankSum=-2.038;SB=-2.359e-02 GT:AD:DP:GQ:PL 0/1:25,5:30:1:1,0,163 0/1:22,7:29:17:17,0,105 0/0:24,5:30:15:0,15,149 1/1:17,7:24:9:102,9,0 +chr17 9605061 . G T 48.48 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.613;DP=70;Dels=0.01;FS=4.972;HaplotypeScore=32.5754;MLEAC=4;MLEAF=0.500;MQ=18.13;MQ0=0;MQRankSum=1.402;QD=0.93;ReadPosRankSum=-0.672;SB=-1.951e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:15:0,15,144 0/1:17,1:18:21:21,0,41 0/1:18,2:20:24:24,0,55 1/1:9,4:13:6:49,6,0 +chr17 9737090 . G C,T 64 . AC=2,1;AF=0.250,0.125;AN=8;BaseQRankSum=-1.218;DP=76;Dels=0.00;FS=5.238;HaplotypeScore=6.1693;MLEAC=2,1;MLEAF=0.250,0.125;MQ=23.90;MQ0=0;MQRankSum=1.533;QD=0.97;ReadPosRankSum=0.874;SB=-5.349e-01 GT:AD:DP:GQ:PL 0/1:19,3,2:24:45:56,0,80,45,69,131 0/1:15,2,0:17:40:40,0,53,46,59,105 0/0:9,0,1:10:3:0,3,29,3,29,29 0/2:21,1,3:25:37:40,37,208,0,151,168 +chr17 9764531 rs2001486 A G 326.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.531;DB;DP=107;Dels=0.02;FS=0.000;HaplotypeScore=2.2134;MLEAC=4;MLEAF=0.500;MQ=28.97;MQ0=0;MQRankSum=0.005;QD=4.87;ReadPosRankSum=0.386;SB=-2.324e-02 GT:AD:DP:GQ:PL 1/1:3,10:13:27:311,27,0 0/0:40,0:40:84:0,84,951 0/1:22,4:26:42:42,0,471 0/1:23,3:26:22:22,0,462 +chr17 9764613 rs2280493 A G 599.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.370;DB;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=0.4900;MLEAC=4;MLEAF=0.500;MQ=33.53;MQ0=0;MQRankSum=-3.366;QD=14.62;ReadPosRankSum=-0.117;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:69:0,69,906 1/1:0,9:9:27:320,27,0 0/1:8,7:15:99:196,0,256 0/1:9,7:16:99:132,0,237 +chr17 9792872 rs17681708 T C 1164.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.720;DB;DP=91;Dels=0.01;FS=1.137;HaplotypeScore=1.2349;MLEAC=4;MLEAF=0.500;MQ=35.49;MQ0=0;MQRankSum=-0.267;QD=17.38;ReadPosRankSum=0.967;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:2,18:20:54:702,54,0 0/0:24,0:24:66:0,66,818 0/1:14,11:25:99:358,0,428 0/1:14,7:21:99:153,0,430 +chr17 9804493 rs6503264 C T 540.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.585;DB;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=36.87;MQ0=0;MQRankSum=-3.531;QD=15.45;ReadPosRankSum=0.445;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,0:21:57:0,57,792 1/1:0,12:12:27:338,27,0 0/1:8,5:13:99:132,0,244 0/1:5,5:10:99:119,0,143 +chr17 10162547 rs4791958 T C 156.14 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.644;DB;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=12.87;MQ0=0;MQRankSum=-1.200;QD=4.00;ReadPosRankSum=1.644;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,13:14:6:71,6,0 1/1:0,13:13:3:40,3,0 1/1:0,12:12:6:81,6,0 ./. +chr17 10205067 rs2008528 C T 2363.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.493;DB;DP=84;Dels=0.00;FS=8.358;HaplotypeScore=1.2428;MLEAC=8;MLEAF=1.00;MQ=32.81;MQ0=0;MQRankSum=4.380;QD=28.13;ReadPosRankSum=0.382;SB=-1.939e+02 GT:AD:DP:GQ:PL 1/1:1,19:20:51:666,51,0 1/1:2,19:21:51:668,51,0 1/1:5,16:21:45:558,45,0 1/1:5,17:22:16:510,16,0 +chr17 10219486 rs12453404 A G 243.26 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.373;DB;DP=21;Dels=0.00;FS=3.222;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=26.86;MQ0=0;MQRankSum=1.091;QD=15.20;ReadPosRankSum=-0.528;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:15:0,15,157 0/1:3,4:7:45:87,0,45 1/1:0,6:6:15:175,15,0 0/1:2,1:3:26:29,0,26 +chr17 10250083 . T C 488.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.477;DP=361;Dels=0.01;FS=129.527;HaplotypeScore=7.7024;MLEAC=4;MLEAF=0.500;MQ=35.54;MQ0=0;MQRankSum=-4.640;QD=1.35;ReadPosRankSum=-2.286;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:84,13:97:99:161,0,2284 0/1:76,11:87:99:148,0,1823 0/1:82,14:96:99:155,0,2028 0/1:71,8:79:67:67,0,1849 +chr17 10297707 . T C 46.06 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.173;DP=126;Dels=0.01;FS=26.102;HaplotypeScore=6.8406;MLEAC=1;MLEAF=0.125;MQ=15.54;MQ0=0;MQRankSum=0.357;QD=1.12;ReadPosRankSum=2.287;SB=0.018 GT:AD:DP:GQ:PL 0/0:28,3:31:15:0,15,162 0/0:29,1:30:18:0,18,163 0/0:22,1:23:21:0,21,245 0/1:35,6:41:82:82,0,116 +chr17 10312875 . C T 88.74 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.492;DP=119;Dels=0.00;FS=50.937;HaplotypeScore=6.2299;MLEAC=4;MLEAF=0.500;MQ=12.80;MQ0=0;MQRankSum=0.918;QD=0.75;ReadPosRankSum=2.366;SB=0.073 GT:AD:DP:GQ:PL 0/1:28,6:34:29:29,0,69 0/1:26,7:33:14:14,0,45 0/1:27,5:32:45:45,0,51 0/1:13,6:20:23:43,0,23 +chr17 10353942 . G T 56.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.234;DP=156;Dels=0.00;FS=46.625;HaplotypeScore=9.9371;MLEAC=4;MLEAF=0.500;MQ=27.72;MQ0=0;MQRankSum=0.622;QD=0.36;ReadPosRankSum=1.981;SB=-1.045e-01 GT:AD:DP:GQ:PL 0/1:39,3:42:20:20,0,604 0/1:32,3:35:21:21,0,363 0/1:41,3:44:37:37,0,487 0/1:32,3:35:21:21,0,282 +chr17 10358205 . G C 43.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.317;DP=104;Dels=0.00;FS=36.820;HaplotypeScore=2.9162;MLEAC=2;MLEAF=0.250;MQ=35.33;MQ0=0;MQRankSum=-2.120;QD=0.84;ReadPosRankSum=1.349;SB=-1.828e+00 GT:AD:DP:GQ:PL 0/0:20,2:23:7:0,7,396 0/1:27,3:30:11:11,0,793 0/0:30,0:30:60:0,60,794 0/1:17,4:21:72:72,0,350 +chr17 10364191 rs1029665 T C 1079.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.245;DB;DP=143;Dels=0.00;FS=5.123;HaplotypeScore=1.7121;MLEAC=3;MLEAF=0.375;MQ=30.00;MQ0=0;MQRankSum=-0.338;QD=9.91;ReadPosRankSum=-0.364;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,14:32:99:339,0,451 0/0:34,0:34:93:0,93,1099 0/1:23,17:40:99:461,0,479 0/1:23,14:37:99:323,0,635 +chr17 10408331 . C T 51.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.882;DP=99;Dels=0.00;FS=5.175;HaplotypeScore=1.4149;MLEAC=3;MLEAF=0.375;MQ=14.88;MQ0=0;MQRankSum=2.732;QD=0.74;ReadPosRankSum=-1.286;SB=-9.840e-01 GT:AD:DP:GQ:PL 0/0:29,0:29:24:0,24,227 0/1:29,1:30:18:18,0,48 0/1:26,1:27:21:21,0,27 0/1:11,2:13:20:56,0,20 +chr17 10428439 . C G 79.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.131;DP=148;Dels=0.00;FS=10.937;HaplotypeScore=2.4821;MLEAC=1;MLEAF=0.125;MQ=37.28;MQ0=0;MQRankSum=-1.415;QD=4.71;ReadPosRankSum=0.324;SB=-1.935e-03 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,105,1297 0/0:44,0:44:99:0,108,1388 0/0:40,1:41:67:0,67,1125 0/1:12,5:17:99:116,0,252 +chr17 10547722 . A G 563.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.394;DP=145;Dels=0.03;FS=75.539;HaplotypeScore=9.3997;MLEAC=4;MLEAF=0.500;MQ=34.10;MQ0=0;MQRankSum=2.098;QD=3.89;ReadPosRankSum=0.331;SB=-9.501e-04 GT:AD:DP:GQ:PL 0/1:32,10:42:99:251,0,616 0/1:30,7:37:99:164,0,570 0/1:34,6:41:99:104,0,740 0/1:18,3:21:87:87,0,208 +chr17 11583101 . G T 274.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.229;DP=127;Dels=0.00;FS=35.056;HaplotypeScore=3.2146;MLEAC=4;MLEAF=0.500;MQ=34.94;MQ0=0;MQRankSum=-2.152;QD=2.16;ReadPosRankSum=-0.748;SB=-5.480e-01 GT:AD:DP:GQ:PL 0/1:27,6:33:99:143,0,641 0/1:31,3:34:8:8,0,639 0/1:37,5:42:33:33,0,862 0/1:11,6:18:99:132,0,280 +chr17 11593470 . G C 70.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.774;DP=115;Dels=0.00;FS=20.343;HaplotypeScore=6.6322;MLEAC=1;MLEAF=0.125;MQ=31.80;MQ0=0;MQRankSum=-0.820;QD=1.10;ReadPosRankSum=-0.295;SB=-5.047e+00 GT:AD:DP:GQ:PL 0/0:23,0:23:48:0,48,559 0/1:24,6:30:99:105,0,618 0/1:32,2:34:2:2,0,742 0/0:28,0:28:63:0,63,731 +chr17 11958354 . A T 110.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.389;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=2.1115;MLEAC=3;MLEAF=0.375;MQ=29.23;MQ0=0;MQRankSum=-3.393;QD=2.31;ReadPosRankSum=2.815;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:42:42,0,326 0/1:14,5:19:63:63,0,360 0/1:10,4:14:47:47,0,67 0/0:2,0:2:3:0,3,32 +chr17 12914929 . A C 256.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.888;DP=105;Dels=0.00;FS=2.312;HaplotypeScore=5.7191;MLEAC=3;MLEAF=0.375;MQ=35.13;MQ0=0;MQRankSum=-3.319;QD=3.13;ReadPosRankSum=2.484;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/1:20,4:24:64:64,0,591 0/0:23,0:23:54:0,54,639 0/1:25,5:30:98:98,0,598 0/1:22,6:28:99:138,0,330 +chr17 12919040 . C T 106.78 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.504;DP=158;Dels=0.00;FS=2.310;HaplotypeScore=6.8538;MLEAC=3;MLEAF=0.375;MQ=28.78;MQ0=0;MQRankSum=-2.250;QD=0.92;ReadPosRankSum=0.221;SB=2.04 GT:AD:DP:GQ:PL 0/1:46,6:52:76:76,0,688 0/0:38,4:42:8:0,8,782 0/1:46,4:50:14:14,0,624 0/1:10,4:14:59:59,0,197 +chr17 14095529 . C G 68.50 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.695;DP=112;Dels=0.00;FS=8.918;HaplotypeScore=2.2038;MLEAC=1;MLEAF=0.125;MQ=17.63;MQ0=0;MQRankSum=2.454;QD=3.26;ReadPosRankSum=-0.325;SB=0.424 GT:AD:DP:GQ:PL 0/0:27,0:27:9:0,9,95 0/0:29,0:29:15:0,15,163 0/0:35,0:35:6:0,6,59 0/1:17,4:21:99:104,0,112 +chr17 15848643 . G T 42.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.322;DP=12;Dels=0.00;FS=3.332;HaplotypeScore=0.7192;MLEAC=4;MLEAF=0.500;MQ=20.52;MQ0=0;MQRankSum=1.221;QD=7.12;ReadPosRankSum=1.920;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,37 0/0:3,0:3:3:0,3,22 1/1:1,2:3:6:56,6,0 1/1:2,1:3:3:29,3,0 +chr17 15961818 . G C 714.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.078;DP=209;Dels=0.00;FS=109.159;HaplotypeScore=1.7060;MLEAC=4;MLEAF=0.500;MQ=34.17;MQ0=0;MQRankSum=2.518;QD=3.42;ReadPosRankSum=1.518;SB=-1.273e-02 GT:AD:DP:GQ:PL 0/1:31,13:44:99:410,0,692 0/1:43,4:47:36:36,0,1057 0/1:66,10:76:99:150,0,1625 0/1:31,8:41:99:161,0,576 +chr17 16722955 . G T 44 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.208;DP=122;Dels=0.00;FS=7.040;HaplotypeScore=2.0935;MLEAC=3;MLEAF=0.375;MQ=11.49;MQ0=0;MQRankSum=3.022;QD=0.45;ReadPosRankSum=0.712;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,7:39:29:29,0,73 0/0:21,4:25:6:0,6,48 0/1:29,2:31:16:30,0,16 0/1:21,6:27:27:27,0,44 +chr17 16722984 rs3852824 G A 425.55 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.260;DB;DP=93;Dels=0.01;FS=3.067;HaplotypeScore=2.1619;MLEAC=5;MLEAF=0.625;MQ=25.05;MQ0=0;MQRankSum=-1.844;QD=4.58;ReadPosRankSum=1.195;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,8:28:99:141,0,279 1/1:6,9:15:9:101,9,0 0/1:14,13:27:99:189,0,155 0/1:16,6:22:39:39,0,232 +chr17 16833741 . A T 105.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.142;DP=91;Dels=0.01;FS=4.588;HaplotypeScore=3.6292;MLEAC=4;MLEAF=0.500;MQ=18.30;MQ0=0;MQRankSum=3.265;QD=1.16;ReadPosRankSum=-0.376;SB=-2.005e+00 GT:AD:DP:GQ:PL 0/1:17,3:20:47:47,0,87 0/1:24,3:27:4:4,0,141 0/1:22,2:24:55:55,0,87 0/1:17,2:19:25:41,0,25 +chr17 17041252 . C T 85.89 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.228;DP=110;Dels=0.00;FS=29.540;HaplotypeScore=1.0253;MLEAC=4;MLEAF=0.500;MQ=15.68;MQ0=0;MQRankSum=3.490;QD=0.78;ReadPosRankSum=0.414;SB=-2.229e+00 GT:AD:DP:GQ:PL 0/1:24,2:26:28:28,0,148 0/1:27,1:28:4:4,0,127 0/1:23,1:24:19:19,0,40 0/1:29,3:32:49:76,0,49 +chr17 17118442 rs34235236 T C 790.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.656;DB;DP=133;Dels=0.00;FS=3.765;HaplotypeScore=2.9097;MLEAC=4;MLEAF=0.500;MQ=30.09;MQ0=0;MQRankSum=-2.916;QD=5.94;ReadPosRankSum=0.636;SB=-3.470e+02 GT:AD:DP:GQ:PL 0/1:30,6:36:83:83,0,655 0/1:17,7:24:99:171,0,382 0/1:21,13:34:99:353,0,521 0/1:28,11:39:99:226,0,372 +chr17 17127217 . A C 39.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.618;DP=61;Dels=0.03;FS=0.000;HaplotypeScore=5.2674;MLEAC=3;MLEAF=0.375;MQ=27.14;MQ0=0;MQRankSum=-3.579;QD=0.81;ReadPosRankSum=1.567;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,2:11:21:0,21,244 0/1:10,2:13:10:10,0,143 0/1:16,3:19:49:49,0,307 0/1:13,3:16:23:23,0,214 +chr17 17226412 . G A 232.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.449;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=1.1206;MLEAC=4;MLEAF=0.500;MQ=33.47;MQ0=0;MQRankSum=-4.337;QD=1.12;ReadPosRankSum=-1.211;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:43,4:47:27:27,0,955 0/1:45,7:52:61:61,0,971 0/1:46,6:52:62:62,0,1046 0/1:48,7:55:99:125,0,724 +chr17 17714152 . G C 127.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.257;DP=122;Dels=0.02;FS=48.157;HaplotypeScore=8.0988;MLEAC=3;MLEAF=0.375;MQ=28.40;MQ0=0;MQRankSum=1.283;QD=1.32;ReadPosRankSum=-0.947;SB=-1.201e+00 GT:AD:DP:GQ:PL 0/1:28,4:32:86:86,0,527 0/1:27,4:31:59:59,0,472 0/0:24,1:25:20:0,20,470 0/1:29,3:32:26:26,0,579 +chr17 17714393 . C G 49.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.218;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.1185;MLEAC=2;MLEAF=0.250;MQ=27.96;MQ0=0;MQRankSum=-3.547;QD=1.34;ReadPosRankSum=1.174;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:42:42,0,244 0/0:12,1:13:27:0,27,325 0/1:17,6:23:49:49,0,367 0/0:10,0:10:21:0,21,229 +chr17 17750907 rs7501812 G A 350 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.050;DB;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=4.0967;MLEAC=8;MLEAF=1.00;MQ=24.28;MQ0=0;MQRankSum=0.350;QD=12.07;ReadPosRankSum=1.150;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:4,5:9:12:113,12,0 0/1:4,5:9:5:119,0,5 1/1:2,1:3:3:41,3,0 1/1:3,4:7:12:117,12,0 +chr17 18039834 . C A 44.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.130;DP=101;Dels=0.00;FS=20.633;HaplotypeScore=4.4048;MLEAC=1;MLEAF=0.125;MQ=29.50;MQ0=0;MQRankSum=-0.233;QD=1.92;ReadPosRankSum=-1.467;SB=-6.383e+00 GT:AD:DP:GQ:PL 0/0:20,1:21:22:0,22,487 0/0:23,1:24:2:0,2,368 0/0:31,2:33:6:0,6,685 0/1:19,4:23:79:79,0,323 +chr17 18045397 . T C 32.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.329;DP=83;Dels=0.04;FS=10.209;HaplotypeScore=26.6180;MLEAC=3;MLEAF=0.375;MQ=22.33;MQ0=0;MQRankSum=-0.937;QD=0.55;ReadPosRankSum=1.887;SB=-7.648e-01 GT:AD:DP:GQ:PL 0/1:16,5:21:51:51,0,158 0/1:12,1:13:4:4,0,128 0/1:22,2:24:19:19,0,254 0/0:22,0:22:21:0,21,210 +chr17 18059637 . T A 97.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.198;DP=131;Dels=0.05;FS=2.199;HaplotypeScore=9.5015;MLEAC=2;MLEAF=0.250;MQ=25.63;MQ0=0;MQRankSum=-1.508;QD=1.32;ReadPosRankSum=-0.390;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,0:26:33:0,33,373 0/1:31,7:38:99:131,0,392 0/1:28,4:32:4:4,0,363 0/0:28,1:29:9:0,9,284 +chr17 18060225 . G A 86.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.378;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9056;MLEAC=3;MLEAF=0.375;MQ=23.51;MQ0=0;MQRankSum=-0.927;QD=1.84;ReadPosRankSum=-1.099;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,1:14:5:5,0,123 0/0:7,1:10:15:0,15,155 0/1:12,5:18:89:89,0,137 0/1:13,2:15:34:34,0,114 +chr17 18061057 . A G 455.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.989;DP=80;Dels=0.00;FS=5.546;HaplotypeScore=1.5260;MLEAC=4;MLEAF=0.500;MQ=30.74;MQ0=0;MQRankSum=-3.742;QD=5.69;ReadPosRankSum=2.609;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,7:18:99:138,0,255 0/1:19,8:27:99:142,0,306 0/1:11,6:17:99:133,0,196 0/1:14,4:18:85:85,0,306 +chr17 18066425 . G A 116.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.038;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.1447;MLEAC=3;MLEAF=0.375;MQ=28.91;MQ0=0;MQRankSum=-0.394;QD=1.55;ReadPosRankSum=2.353;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,1:20:9:0,9,398 0/1:22,4:26:64:64,0,347 0/1:27,4:31:61:61,0,365 0/1:16,2:18:34:34,0,126 +chr17 18087902 . G T 179.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.752;DP=101;Dels=0.01;FS=40.031;HaplotypeScore=14.3346;MLEAC=3;MLEAF=0.375;MQ=31.63;MQ0=0;MQRankSum=-2.385;QD=2.50;ReadPosRankSum=1.675;SB=-5.255e-02 GT:AD:DP:GQ:PL 0/1:17,2:19:21:21,0,477 0/0:26,3:29:51:0,51,587 0/1:23,6:29:99:117,0,596 0/1:19,4:23:85:85,0,96 +chr17 18141669 . A G 53.26 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.469;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.6734;MLEAC=2;MLEAF=0.250;MQ=32.85;MQ0=0;MQRankSum=-1.000;QD=1.90;ReadPosRankSum=-0.469;SB=-5.175e-01 GT:AD:DP:GQ:PL 0/1:11,1:12:13:13,0,265 0/0:12,0:12:27:0,27,333 0/0:14,0:14:30:0,30,361 0/1:13,3:16:81:81,0,132 +chr17 18145031 . T C 70.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.421;DP=54;Dels=0.00;FS=15.003;HaplotypeScore=3.0602;MLEAC=2;MLEAF=0.250;MQ=29.05;MQ0=0;MQRankSum=-1.018;QD=2.28;ReadPosRankSum=0.484;SB=0.618 GT:AD:DP:GQ:PL 0/0:16,0:16:30:0,30,339 0/1:9,2:11:45:45,0,118 0/1:16,4:20:67:67,0,386 0/0:7,0:7:15:0,15,175 +chr17 18152426 . A C 65.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.449;DP=64;Dels=0.03;FS=10.857;HaplotypeScore=10.1204;MLEAC=3;MLEAF=0.375;MQ=26.83;MQ0=0;MQRankSum=-1.746;QD=1.23;ReadPosRankSum=2.748;SB=1.42 GT:AD:DP:GQ:PL 0/1:11,3:14:36:36,0,129 0/1:14,5:19:51:51,0,99 0/1:15,3:18:21:21,0,299 0/0:10,1:11:9:0,9,93 +chr17 18158141 . A G 351.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.574;DP=116;Dels=0.00;FS=131.393;HaplotypeScore=9.6113;MLEAC=4;MLEAF=0.500;MQ=30.44;MQ0=0;MQRankSum=-0.175;QD=3.03;ReadPosRankSum=0.704;SB=-3.568e+00 GT:AD:DP:GQ:PL 0/1:22,6:28:98:98,0,443 0/1:28,6:34:99:130,0,502 0/1:25,4:29:62:62,0,523 0/1:20,5:25:99:104,0,410 +chr17 18167146 . C A 86.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.520;DP=69;Dels=0.03;FS=17.584;HaplotypeScore=19.6043;MLEAC=3;MLEAF=0.375;MQ=25.86;MQ0=0;MQRankSum=0.774;QD=1.69;ReadPosRankSum=-0.165;SB=0.020 GT:AD:DP:GQ:PL 0/1:15,4:19:86:86,0,286 0/1:15,2:17:13:13,0,246 0/0:16,1:17:27:0,27,264 0/1:13,1:14:24:30,0,24 +chr17 18215586 rs12949078 G C 66.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.942;DB;DP=18;Dels=0.00;FS=2.769;HaplotypeScore=0.6835;MLEAC=2;MLEAF=0.250;MQ=31.54;MQ0=0;MQRankSum=0.404;QD=9.56;ReadPosRankSum=-1.076;SB=-1.529e+00 GT:AD:DP:GQ:PL 0/1:1,2:3:33:72,0,33 0/0:6,0:6:15:0,15,203 0/0:4,0:5:3:0,3,39 0/1:3,1:4:35:35,0,37 +chr17 18675778 . A T 776.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.899;DP=364;Dels=0.00;FS=202.859;HaplotypeScore=5.5917;MLEAC=4;MLEAF=0.500;MQ=37.24;MQ0=0;MQRankSum=-5.530;QD=2.13;ReadPosRankSum=1.080;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:89,17:106:99:374,0,2219 0/1:82,11:93:99:136,0,2307 0/1:89,11:100:99:160,0,1988 0/1:55,10:65:99:149,0,1370 +chr17 18883064 . C G 1137.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.276;DP=130;Dels=0.00;FS=4.621;HaplotypeScore=2.8831;MLEAC=4;MLEAF=0.500;MQ=30.18;MQ0=0;MQRankSum=0.485;QD=8.75;ReadPosRankSum=3.215;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,14:38:99:336,0,211 0/1:21,12:33:99:289,0,184 0/1:21,10:31:99:296,0,171 0/1:17,11:28:99:259,0,166 +chr17 19284946 . C A 72.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.926;DP=87;Dels=0.01;FS=4.739;HaplotypeScore=2.4858;MLEAC=2;MLEAF=0.250;MQ=36.70;MQ0=0;MQRankSum=-0.654;QD=1.65;ReadPosRankSum=-0.977;SB=1.32 GT:AD:DP:GQ:PL 0/1:22,3:25:37:37,0,490 0/0:16,1:17:11:0,11,525 0/0:25,1:26:25:0,25,498 0/1:15,3:18:77:77,0,340 +chr17 19288274 rs2240099 T G 62.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.727;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=4;MLEAF=1.00;MQ=18.61;MQ0=0;MQRankSum=0.727;QD=10.37;ReadPosRankSum=-0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:60,6,0 1/1:1,1:2:3:36,3,0 ./. ./. +chr17 19288856 . G C 73.55 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.184;DP=29;Dels=0.00;FS=2.963;HaplotypeScore=2.3032;MLEAC=4;MLEAF=0.500;MQ=23.15;MQ0=0;MQRankSum=0.551;QD=2.54;ReadPosRankSum=1.164;SB=18.78 GT:AD:DP:GQ:PL 1/1:4,2:7:6:52,6,0 0/1:7,1:8:18:19,0,18 0/1:5,1:6:20:20,0,34 0/1:7,1:8:26:26,0,37 +chr17 19445742 . A G 42.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.855;DP=127;Dels=0.01;FS=78.463;HaplotypeScore=16.0571;MLEAC=2;MLEAF=0.250;MQ=31.21;MQ0=0;MQRankSum=-4.072;QD=0.58;ReadPosRankSum=-0.051;SB=-2.109e+00 GT:AD:DP:GQ:PL 0/1:28,7:35:72:72,0,452 0/0:24,2:26:25:0,25,510 0/1:34,5:39:11:11,0,679 0/0:25,1:26:42:0,42,439 +chr17 19618318 . G T 38.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.326;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.2295;MLEAC=2;MLEAF=0.250;MQ=28.69;MQ0=0;MQRankSum=-0.728;QD=1.85;ReadPosRankSum=0.728;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,3:9:70:70,0,147 0/0:10,1:11:27:0,27,310 0/1:11,1:12:7:7,0,195 0/0:3,0:3:3:0,3,28 +chr17 19658849 . G T 45.30 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.113;DP=23;Dels=0.00;FS=10.296;HaplotypeScore=4.5084;MLEAC=5;MLEAF=0.625;MQ=20.85;MQ0=0;MQRankSum=1.133;QD=2.83;ReadPosRankSum=0.680;SB=3.95 GT:AD:DP:GQ:PL 1/1:1,3:4:3:32,3,0 1/1:2,1:3:3:30,3,0 0/1:8,1:9:25:25,0,29 0/0:7,0:7:3:0,3,28 +chr17 19658853 rs11204415 A G 53.12 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.488;DB;DP=25;Dels=0.00;FS=2.858;HaplotypeScore=3.6302;MLEAC=1;MLEAF=0.125;MQ=21.67;MQ0=0;MQRankSum=-0.271;QD=5.90;ReadPosRankSum=0.163;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:9:0,9,94 0/0:4,0:4:6:0,6,46 0/1:3,5:9:19:88,0,19 0/0:5,1:6:3:0,3,31 +chr17 19659438 . T G 64.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.001;DP=25;Dels=0.04;FS=6.317;HaplotypeScore=0.6454;MLEAC=2;MLEAF=0.250;MQ=26.00;MQ0=0;MQRankSum=2.122;QD=4.63;ReadPosRankSum=0.546;SB=2.59 GT:AD:DP:GQ:PL 0/1:6,1:7:18:19,0,18 0/1:4,3:7:54:86,0,54 0/0:6,0:6:9:0,9,74 0/0:4,0:4:6:0,6,49 +chr17 20353338 . A G 36.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.468;DP=28;Dels=0.00;FS=5.798;HaplotypeScore=2.1995;MLEAC=3;MLEAF=0.375;MQ=19.21;MQ0=0;MQRankSum=1.745;QD=1.50;ReadPosRankSum=-1.234;SB=-2.293e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:42:42,0,68 0/1:7,1:8:17:17,0,36 0/1:6,1:7:18:18,0,53 0/0:4,0:4:3:0,3,24 +chr17 20487806 . A T 37.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=-1.398;DP=32;Dels=0.00;FS=18.146;HaplotypeScore=0.3943;MLEAC=4;MLEAF=1.00;MQ=11.14;MQ0=0;MQRankSum=2.292;QD=1.95;ReadPosRankSum=-2.292;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:7,1:8:3:33,3,0 1/1:9,2:11:3:37,3,0 ./. +chr17 20674541 . C A 54.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.139;DP=163;Dels=0.01;FS=21.568;HaplotypeScore=2.1089;MLEAC=4;MLEAF=0.500;MQ=15.47;MQ0=0;MQRankSum=3.567;QD=0.33;ReadPosRankSum=0.487;SB=-3.456e-01 GT:AD:DP:GQ:PL 0/1:43,3:46:14:51,0,14 0/1:35,2:37:11:11,0,72 0/1:40,2:42:9:9,0,96 0/1:36,1:37:25:25,0,84 +chr17 20908326 . T G 548.70 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.960;DP=92;Dels=0.00;FS=9.827;HaplotypeScore=12.4419;MLEAC=5;MLEAF=0.625;MQ=26.82;MQ0=0;MQRankSum=-0.330;QD=5.96;ReadPosRankSum=3.168;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,5:25:99:103,0,109 0/1:17,8:25:99:118,0,177 0/1:20,4:24:71:103,0,71 1/1:8,10:18:5:268,5,0 +chr17 21075419 . C T 46.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.810;DP=66;Dels=0.03;FS=36.070;HaplotypeScore=15.3497;MLEAC=3;MLEAF=0.375;MQ=24.48;MQ0=0;MQRankSum=-1.839;QD=1.00;ReadPosRankSum=-0.015;SB=-3.533e+00 GT:AD:DP:GQ:PL 0/1:11,4:15:64:64,0,91 0/1:12,1:13:13:13,0,73 0/1:14,2:16:9:9,0,276 0/0:16,4:20:2:0,2,252 +chr17 21202140 . G T 62.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.338;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=2.7616;MLEAC=3;MLEAF=0.375;MQ=31.68;MQ0=0;MQRankSum=-3.568;QD=0.89;ReadPosRankSum=0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,3:21:39:39,0,246 0/1:16,5:22:55:55,0,131 0/0:22,0:23:33:0,33,348 0/1:24,2:26:11:11,0,386 +chr17 21215682 rs73302038 G A 162.33 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.909;DB;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.5058;MLEAC=3;MLEAF=0.375;MQ=30.14;MQ0=0;MQRankSum=-0.952;QD=3.06;ReadPosRankSum=-1.979;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:28:28,0,311 0/1:15,2:17:11:11,0,417 0/1:16,6:22:99:166,0,235 0/0:11,0:11:21:0,21,258 +chr17 21217554 rs2363196 C T 519.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.381;DB;DP=171;Dels=0.00;FS=7.416;HaplotypeScore=4.0587;MLEAC=4;MLEAF=0.500;MQ=28.89;MQ0=0;MQRankSum=-5.660;QD=3.04;ReadPosRankSum=-0.896;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:26,8:34:99:166,0,573 0/1:32,11:43:99:150,0,796 0/1:39,13:52:99:175,0,1149 0/1:31,11:42:71:71,0,770 +chr17 21247694 rs1673820 T C 37.26 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.736;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=30.24;MQ0=0;MQRankSum=0.736;QD=18.63;ReadPosRankSum=-0.736;SB=-3.225e+01 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6:72,6,0 0/0:1,0:1:3:0,3,39 ./. +chr17 21312642 rs2364027 G T 87.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.550;DB;DP=19;Dels=0.00;FS=3.274;HaplotypeScore=0.8888;MLEAC=3;MLEAF=0.375;MQ=21.77;MQ0=0;MQRankSum=-1.010;QD=5.44;ReadPosRankSum=-0.337;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,1:3:6:0,6,66 0/1:1,1:3:16:16,0,27 0/1:6,3:9:61:65,0,61 0/1:1,3:4:18:48,0,18 +chr17 21906392 rs687221 A G 80.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.543;DB;DP=82;Dels=0.04;FS=20.522;HaplotypeScore=8.9907;MLEAC=4;MLEAF=0.500;MQ=12.78;MQ0=0;MQRankSum=1.134;QD=0.99;ReadPosRankSum=1.373;SB=-1.639e+01 GT:AD:DP:GQ:PL 0/1:10,1:11:16:16,0,90 0/1:21,1:22:16:16,0,22 0/1:16,7:23:21:21,0,55 0/1:16,7:23:36:70,0,36 +chr17 21911551 . C T 33.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.533;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.2584;MLEAC=2;MLEAF=0.250;MQ=15.31;MQ0=0;MQRankSum=2.404;QD=0.69;ReadPosRankSum=-1.501;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:22,1:23:19:19,0,81 0/1:24,2:26:17:55,0,17 0/0:20,0:20:6:0,6,66 0/0:17,0:17:12:0,12,133 +chr17 25309007 rs76786726 G A 100.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.636;DB;DP=90;Dels=0.00;FS=1.071;HaplotypeScore=10.5843;MLEAC=3;MLEAF=0.375;MQ=16.09;MQ0=0;MQRankSum=0.648;QD=1.38;ReadPosRankSum=2.730;SB=-3.662e+01 GT:AD:DP:GQ:PL 0/0:15,2:17:3:0,3,24 0/1:13,3:16:17:70,0,17 0/1:23,7:31:30:30,0,193 0/1:21,5:26:42:42,0,109 +chr17 25601280 . A C 37.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.416;DP=103;Dels=0.01;FS=27.420;HaplotypeScore=11.2660;MLEAC=3;MLEAF=0.375;MQ=13.08;MQ0=0;MQRankSum=2.093;QD=0.46;ReadPosRankSum=0.078;SB=13.85 GT:AD:DP:GQ:PL 0/1:27,2:29:44:44,0,45 0/1:25,2:27:19:19,0,45 0/1:24,1:25:16:16,0,69 0/0:19,1:21:6:0,6,62 +chr17 25783830 . G A 50.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.373;DP=37;Dels=0.00;FS=5.297;HaplotypeScore=10.5030;MLEAC=3;MLEAF=0.375;MQ=17.40;MQ0=0;MQRankSum=1.642;QD=1.80;ReadPosRankSum=-2.234;SB=0.851 GT:AD:DP:GQ:PL 0/1:8,1:9:10:10,0,130 0/0:8,1:9:6:0,6,63 0/1:10,3:13:54:59,0,54 0/1:5,1:6:19:23,0,19 +chr17 25910103 . A C 225.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.801;DP=51;Dels=0.04;FS=50.855;HaplotypeScore=5.6635;MLEAC=4;MLEAF=0.500;MQ=34.61;MQ0=0;MQRankSum=-0.311;QD=4.42;ReadPosRankSum=0.230;SB=-1.726e+00 GT:AD:DP:GQ:PL 0/1:15,3:18:65:65,0,355 0/1:4,4:8:70:121,0,70 0/1:10,2:12:31:31,0,260 0/1:8,3:11:51:51,0,82 +chr17 26495572 . G T 181.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-6.297;DP=400;Dels=0.00;FS=121.121;HaplotypeScore=3.4671;MLEAC=2;MLEAF=0.250;MQ=37.14;MQ0=0;MQRankSum=-3.981;QD=1.14;ReadPosRankSum=3.010;SB=-9.810e-01 GT:AD:DP:GQ:PL 0/1:87,9:96:54:54,0,2668 0/0:99,5:104:99:0,102,3029 0/0:128,9:137:99:0,103,4008 0/1:53,10:63:99:169,0,1392 +chr17 26601602 . T A 40.36 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.769;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=1.7195;MLEAC=3;MLEAF=0.375;MQ=25.38;MQ0=0;MQRankSum=1.225;QD=1.44;ReadPosRankSum=0.313;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,1:10:15:15,0,163 0/1:9,2:11:49:53,0,49 0/0:8,0:8:15:0,15,122 0/1:5,1:6:15:15,0,108 +chr17 26678882 . T C 152.29 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.471;DP=61;Dels=0.00;FS=2.866;HaplotypeScore=12.6713;MLEAC=4;MLEAF=0.667;MQ=21.15;MQ0=0;MQRankSum=0.925;QD=3.11;ReadPosRankSum=2.125;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:16:16,0,115 ./. 0/1:13,9:22:86:100,0,86 1/1:7,3:11:9:77,9,0 +chr17 26687898 rs11382918 G GC 1774.65 . AC=7;AF=0.875;AN=8;BaseQRankSum=-2.980;DB;DP=66;FS=0.000;HaplotypeScore=4.5030;MLEAC=7;MLEAF=0.875;MQ=30.04;MQ0=0;MQRankSum=-0.825;QD=26.89;RPA=3,4;RU=C;ReadPosRankSum=2.711;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:4,12:14:36:473,36,0 0/1:5,14:16:15:467,0,15 1/1:3,13:13:7:441,7,0 1/1:1,12:13:12:446,12,0 +chr17 26692224 rs11387886 A AG 2143.56 . AC=6;AF=0.750;AN=8;BaseQRankSum=-3.781;DB;DP=97;FS=3.365;HaplotypeScore=52.9005;MLEAC=6;MLEAF=0.750;MQ=29.54;MQ0=0;MQRankSum=2.099;QD=22.10;RPA=2,3;RU=G;ReadPosRankSum=1.457;SB=-1.101e+03;STR GT:AD:DP:GQ:PL 0/1:14,10:23:99:397,0,109 0/1:12,10:22:7:472,0,7 1/1:6,18:24:8:707,8,0 1/1:6,14:19:31:621,31,0 +chr17 26708302 . GGT G 1556.79 . AC=7;AF=0.875;AN=8;BaseQRankSum=-1.924;DP=37;FS=0.000;HaplotypeScore=50.9510;MLEAC=8;MLEAF=1.00;MQ=31.83;MQ0=0;MQRankSum=1.698;QD=42.08;ReadPosRankSum=1.019;SB=-1.902e-01 GT:AD:DP:GQ:PL 0/1:4,2:6:2:242,0,2 1/1:3,4:7:21:386,21,0 1/1:2,6:9:9:317,9,0 1/1:7,8:14:39:660,39,0 +chr17 26817409 . C A 34.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.577;DP=176;Dels=0.01;FS=8.925;HaplotypeScore=5.3478;MLEAC=1;MLEAF=0.125;MQ=30.66;MQ0=0;MQRankSum=-1.249;QD=0.72;ReadPosRankSum=-2.266;SB=1.08 GT:AD:DP:GQ:PL 0/1:41,5:46:70:70,0,922 0/0:41,1:42:57:0,57,1011 0/0:39,2:41:39:0,39,1097 0/0:42,4:46:18:0,18,868 +chr17 26874484 . G GC 109.55 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.120;DP=39;FS=0.000;HaplotypeScore=12.6228;MLEAC=4;MLEAF=0.500;MQ=19.41;MQ0=0;MQRankSum=1.945;QD=2.81;RPA=1,2;RU=C;ReadPosRankSum=-2.298;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:8,2:7:36:36,0,74 0/1:9,2:4:27:27,0,112 0/1:6,2:6:64:64,0,105 0/1:8,1:2:34:34,0,35 +chr17 26919515 . G T 181.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.283;DP=160;Dels=0.00;FS=129.332;HaplotypeScore=10.6061;MLEAC=4;MLEAF=0.500;MQ=27.07;MQ0=0;MQRankSum=-2.625;QD=1.13;ReadPosRankSum=1.037;SB=-5.506e-01 GT:AD:DP:GQ:PL 0/1:34,6:41:44:44,0,586 0/1:32,4:36:8:8,0,607 0/1:33,8:41:74:74,0,593 0/1:34,8:42:97:97,0,586 +chr17 26925515 . A T 78.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.904;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=26.44;MQ0=0;MQRankSum=1.513;QD=3.04;ReadPosRankSum=-1.636;SB=0.363 GT:AD:DP:GQ:PL 0/0:13,0:13:18:0,18,215 0/1:11,2:13:46:46,0,121 0/0:10,0:10:9:0,9,95 0/1:10,3:13:74:74,0,131 +chr17 26940018 . A G 41.30 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.407;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.0650;MLEAC=2;MLEAF=0.250;MQ=26.52;MQ0=0;MQRankSum=-3.724;QD=1.18;ReadPosRankSum=3.661;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,3:18:4:0,4,238 0/1:14,7:21:72:72,0,208 0/0:27,2:29:54:0,54,665 0/1:11,3:14:8:8,0,145 +chr17 27013468 rs16964503 C T 459.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.776;DB;DP=61;Dels=0.00;FS=2.913;HaplotypeScore=0.2367;MLEAC=3;MLEAF=0.375;MQ=37.12;MQ0=0;MQRankSum=-0.305;QD=10.22;ReadPosRankSum=0.340;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,6:15:99:198,0,228 0/0:16,0:16:45:0,45,574 0/1:10,6:16:99:173,0,312 0/1:9,5:14:99:132,0,206 +chr17 27018096 rs28548383 A G,T 163.39 . AC=3,2;AF=0.375,0.250;AN=8;BaseQRankSum=0.197;DB;DP=45;Dels=0.00;FS=2.963;HaplotypeScore=1.8421;MLEAC=3,2;MLEAF=0.375,0.250;MQ=29.82;MQ0=0;MQRankSum=-0.066;QD=3.63;ReadPosRankSum=1.904;SB=1.70 GT:AD:DP:GQ:PL 1/2:5,1,2:8:30:97,61,58,36,0,30 0/2:12,0,4:16:89:89,104,250,0,146,134 0/1:10,1,1:12:25:25,0,62,31,65,96 0/1:7,1,1:9:3:34,0,26,10,3,37 +chr17 27064844 . C G 123.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.353;DP=114;Dels=0.00;FS=61.630;HaplotypeScore=14.1794;MLEAC=4;MLEAF=0.500;MQ=22.28;MQ0=0;MQRankSum=2.316;QD=1.08;ReadPosRankSum=-0.213;SB=-8.321e-01 GT:AD:DP:GQ:PL 0/1:30,4:34:89:89,0,232 0/1:25,3:28:33:33,0,225 0/1:28,3:31:6:6,0,334 0/1:19,2:21:37:37,0,157 +chr17 27065635 . G C 266.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.496;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7710;MLEAC=4;MLEAF=0.500;MQ=27.72;MQ0=0;MQRankSum=-0.779;QD=5.03;ReadPosRankSum=3.441;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:37:37,0,117 0/1:8,3:11:60:60,0,100 0/1:10,8:18:99:196,0,163 0/1:11,2:13:16:16,0,82 +chr17 27068604 . T G 124.99 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.925;DP=127;Dels=0.00;FS=6.742;HaplotypeScore=2.3103;MLEAC=2;MLEAF=0.250;MQ=33.51;MQ0=0;MQRankSum=-3.568;QD=2.02;ReadPosRankSum=-0.641;SB=1.20 GT:AD:DP:GQ:PL 0/0:32,2:34:35:0,35,1002 0/0:26,5:31:8:0,8,677 0/1:31,7:38:99:133,0,742 0/1:21,3:24:33:33,0,484 +chr17 27076438 . A G 46.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.934;DP=110;Dels=0.00;FS=31.151;HaplotypeScore=3.0671;MLEAC=2;MLEAF=0.250;MQ=30.71;MQ0=0;MQRankSum=-1.983;QD=0.74;ReadPosRankSum=1.103;SB=0.169 GT:AD:DP:GQ:PL 0/0:21,0:21:48:0,48,512 0/0:26,0:26:48:0,48,525 0/1:36,4:40:32:32,0,681 0/1:19,4:23:56:56,0,216 +chr17 27188296 rs28448745 A C 80.47 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.978;DB;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=26.39;MQ0=0;MQRankSum=-0.817;QD=6.19;ReadPosRankSum=0.271;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,1:2:26:26,0,33 1/1:1,2:3:6:61,6,0 0/1:4,1:5:14:14,0,88 0/1:2,1:3:23:23,0,60 +chr17 27424375 . G A 32.16 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.139;DP=85;Dels=0.00;FS=29.157;HaplotypeScore=2.0608;MLEAC=2;MLEAF=0.250;MQ=27.91;MQ0=0;MQRankSum=-1.389;QD=0.71;ReadPosRankSum=-1.014;SB=-1.206e+00 GT:AD:DP:GQ:PL 0/0:11,0:11:18:0,18,189 0/1:20,4:24:43:43,0,361 0/0:27,2:29:7:0,7,552 0/1:17,4:21:30:30,0,258 +chr17 27869968 rs507577 G A 285.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.728;DB;DP=30;Dels=0.00;FS=6.374;HaplotypeScore=1.0476;MLEAC=4;MLEAF=0.500;MQ=33.82;MQ0=0;MQRankSum=0.025;QD=14.27;ReadPosRankSum=1.381;SB=-7.780e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:127,12,0 0/0:10,0:10:24:0,24,337 0/1:5,3:8:95:95,0,96 0/1:5,3:8:60:111,0,60 +chr17 27905954 . C A 86.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.128;DP=132;Dels=0.00;FS=13.269;HaplotypeScore=5.8308;MLEAC=3;MLEAF=0.375;MQ=30.83;MQ0=0;MQRankSum=1.226;QD=0.92;ReadPosRankSum=-1.585;SB=-1.377e+00 GT:AD:DP:GQ:PL 0/1:29,2:31:5:5,0,524 0/1:32,4:36:57:57,0,520 0/0:37,1:38:42:0,42,663 0/1:23,4:27:66:66,0,275 +chr17 27908467 . C A 40.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.445;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.4737;MLEAC=4;MLEAF=0.500;MQ=21.49;MQ0=0;MQRankSum=0.064;QD=1.46;ReadPosRankSum=1.080;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:21:21,0,51 0/1:8,2:10:13:13,0,57 0/1:8,2:10:23:23,0,81 0/1:3,1:4:17:26,0,17 +chr17 28886776 . G A 52.05 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.933;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=5.2445;MLEAC=1;MLEAF=0.125;MQ=16.65;MQ0=0;MQRankSum=2.649;QD=1.63;ReadPosRankSum=1.863;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:38,0:38:24:0,24,253 0/0:42,1:43:21:0,21,175 0/0:42,1:43:15:0,15,147 0/1:28,4:32:83:88,0,83 +chr17 29161109 . T A 39.74 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.640;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1924;MLEAC=2;MLEAF=0.333;MQ=22.54;MQ0=0;MQRankSum=-0.490;QD=1.32;ReadPosRankSum=3.389;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:19:67,0,19 0/1:16,2:18:9:9,0,121 0/0:19,1:20:4:0,4,228 ./. +chr17 29261188 . T A 56 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.351;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=5.4697;MLEAC=1;MLEAF=0.125;MQ=35.34;MQ0=0;MQRankSum=-1.612;QD=5.09;ReadPosRankSum=-1.563;SB=-1.176e-02 GT:AD:DP:GQ:PL 0/0:22,1:23:24:0,24,672 0/0:24,1:25:23:0,23,600 0/0:23,0:24:48:0,48,582 0/1:8,3:11:32:92,0,32 +chr17 29377694 . C T 163.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.844;DP=119;Dels=0.02;FS=57.878;HaplotypeScore=6.8825;MLEAC=4;MLEAF=0.500;MQ=15.64;MQ0=0;MQRankSum=1.575;QD=1.38;ReadPosRankSum=1.960;SB=-2.056e+00 GT:AD:DP:GQ:PL 0/1:27,3:30:63:63,0,92 0/1:26,8:34:89:89,0,92 0/1:29,3:32:39:39,0,77 0/1:17,4:21:15:15,0,46 +chr17 29645456 . T C 125.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.635;DP=90;Dels=0.00;FS=63.523;HaplotypeScore=1.3095;MLEAC=3;MLEAF=0.375;MQ=31.48;MQ0=0;MQRankSum=-3.118;QD=1.88;ReadPosRankSum=0.648;SB=0.706 GT:AD:DP:GQ:PL 0/0:22,1:23:21:0,21,578 0/1:19,3:22:20:20,0,450 0/1:20,4:25:69:69,0,551 0/1:15,5:20:80:80,0,260 +chr17 29849479 rs60594701 C T 52.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.115;DB;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.3494;MLEAC=1;MLEAF=0.125;MQ=24.35;MQ0=0;MQRankSum=1.169;QD=3.06;ReadPosRankSum=0.417;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:88:88,0,244 0/0:18,0:18:39:0,39,411 0/0:19,0:20:45:0,45,462 0/0:13,0:13:18:0,18,194 +chr17 30330261 . T A 73.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.065;DP=111;Dels=0.00;FS=34.208;HaplotypeScore=3.1738;MLEAC=2;MLEAF=0.250;MQ=16.79;MQ0=0;MQRankSum=1.112;QD=1.02;ReadPosRankSum=-1.087;SB=2.47 GT:AD:DP:GQ:PL 0/0:27,1:28:6:0,6,76 0/1:26,4:30:36:79,0,36 0/1:38,4:42:34:34,0,280 0/0:11,0:11:3:0,3,25 +chr17 30348605 . T C 47.58 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.179;DP=133;Dels=0.02;FS=15.220;HaplotypeScore=7.6891;MLEAC=1;MLEAF=0.125;MQ=24.78;MQ0=0;MQRankSum=2.927;QD=1.40;ReadPosRankSum=-1.390;SB=-1.671e+01 GT:AD:DP:GQ:PL 0/0:32,1:33:60:0,60,574 0/0:28,1:29:25:0,25,543 0/1:30,4:34:83:83,0,442 0/0:32,2:34:3:0,3,513 +chr17 30670991 rs111459599 G A 83.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.478;DB;DP=269;Dels=0.00;FS=3.321;HaplotypeScore=1.5920;MLEAC=1;MLEAF=0.125;MQ=20.59;MQ0=0;MQRankSum=-0.900;QD=1.24;ReadPosRankSum=1.608;SB=-1.538e+00 GT:AD:DP:GQ:PL 0/0:73,0:74:57:0,57,637 0/1:49,19:68:99:120,0,448 0/0:82,0:82:96:0,96,1047 0/0:45,0:45:69:0,69,767 +chr17 30692396 rs3795244 G T 192.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.164;DB;DP=194;Dels=0.00;FS=7.890;HaplotypeScore=4.6816;MLEAC=1;MLEAF=0.125;MQ=35.66;MQ0=0;MQRankSum=-0.384;QD=4.71;ReadPosRankSum=1.814;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,132,1633 0/1:32,9:41:99:229,0,936 0/0:65,0:65:99:0,165,2151 0/0:37,0:37:96:0,96,1178 +chr17 31352930 . C T 196.23 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.401;DP=49;Dels=0.02;FS=3.114;HaplotypeScore=14.2257;MLEAC=6;MLEAF=0.750;MQ=19.71;MQ0=0;MQRankSum=2.362;QD=4.00;ReadPosRankSum=-0.496;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:10,4:14:3:30,3,0 1/1:7,5:12:12:118,12,0 0/1:7,4:11:32:70,0,32 0/1:10,1:11:22:22,0,43 +chr17 32687689 rs3136684 A G 1404.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.996;DB;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=1.7896;MLEAC=3;MLEAF=0.375;MQ=33.83;MQ0=0;MQRankSum=0.069;QD=14.63;ReadPosRankSum=3.581;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,105,1291 0/1:14,17:31:99:541,0,350 0/1:14,20:34:99:617,0,307 0/1:21,9:30:99:290,0,419 +chr17 32906089 . G T 78.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.046;DP=50;Dels=0.04;FS=21.676;HaplotypeScore=14.7472;MLEAC=4;MLEAF=0.500;MQ=18.47;MQ0=0;MQRankSum=1.732;QD=1.56;ReadPosRankSum=-0.137;SB=-2.429e-01 GT:AD:DP:GQ:PL 0/1:8,2:10:39:39,0,82 0/1:13,1:14:8:8,0,95 0/1:10,2:12:36:36,0,46 0/1:10,2:12:32:37,0,32 +chr17 33454435 . T C 60.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.406;DP=114;Dels=0.02;FS=26.980;HaplotypeScore=34.0230;MLEAC=3;MLEAF=0.375;MQ=23.98;MQ0=0;MQRankSum=-2.602;QD=0.74;ReadPosRankSum=4.095;SB=-4.376e-01 GT:AD:DP:GQ:PL 0/1:21,5:26:36:36,0,311 0/1:24,3:27:11:11,0,237 0/0:29,2:31:60:0,60,608 0/1:22,6:28:56:56,0,248 +chr17 33464257 . C G 40.35 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.080;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=1.7988;MLEAC=2;MLEAF=0.250;MQ=32.09;MQ0=0;MQRankSum=0.482;QD=2.37;ReadPosRankSum=-0.482;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,2:7:54:54,0,140 0/0:11,0:11:15:0,15,187 0/1:9,1:10:27:27,0,126 0/0:8,0:8:6:0,6,72 +chr17 33504465 rs12451132 C T 42.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.465;DB;DP=70;Dels=0.03;FS=0.000;HaplotypeScore=6.1851;MLEAC=3;MLEAF=0.375;MQ=29.17;MQ0=0;MQRankSum=0.739;QD=0.80;ReadPosRankSum=-0.521;SB=-1.059e+00 GT:AD:DP:GQ:PL 0/0:17,0:17:39:0,39,453 0/1:17,2:19:41:41,0,375 0/1:13,2:15:3:3,0,311 0/1:15,2:17:39:39,0,313 +chr17 33591678 . G T 127.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.271;DP=169;Dels=0.02;FS=127.794;HaplotypeScore=16.5493;MLEAC=4;MLEAF=0.500;MQ=29.23;MQ0=0;MQRankSum=-3.570;QD=0.76;ReadPosRankSum=2.549;SB=-2.117e+00 GT:AD:DP:GQ:PL 0/1:31,8:39:97:97,0,687 0/1:42,5:47:19:19,0,926 0/1:43,7:50:32:32,0,1047 0/1:25,5:30:22:22,0,649 +chr17 33849688 . C A 48.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.292;DP=99;Dels=0.00;FS=43.083;HaplotypeScore=9.2175;MLEAC=3;MLEAF=0.375;MQ=13.44;MQ0=0;MQRankSum=2.475;QD=0.63;ReadPosRankSum=1.234;SB=0.881 GT:AD:DP:GQ:PL 0/1:20,5:25:28:28,0,123 0/0:19,2:21:6:0,6,52 0/1:24,3:28:36:36,0,81 0/1:21,4:25:27:27,0,117 +chr17 34095004 . G C 950.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.229;DP=125;Dels=0.00;FS=3.332;HaplotypeScore=7.4120;MLEAC=4;MLEAF=0.500;MQ=30.01;MQ0=0;MQRankSum=-3.085;QD=7.60;ReadPosRankSum=4.897;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,13:33:99:309,0,314 0/1:20,12:32:99:278,0,241 0/1:25,11:36:99:217,0,174 0/1:15,9:24:99:189,0,137 +chr17 34249482 . T C 133.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.792;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=3.2716;MLEAC=4;MLEAF=0.500;MQ=23.65;MQ0=0;MQRankSum=-0.130;QD=1.52;ReadPosRankSum=1.440;SB=-4.026e-02 GT:AD:DP:GQ:PL 0/1:23,2:25:18:18,0,241 0/1:23,6:29:99:107,0,278 0/1:21,4:26:25:25,0,220 0/1:4,3:7:26:26,0,33 +chr17 34431388 . T A 70.52 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.201;DP=109;Dels=0.01;FS=14.610;HaplotypeScore=0.2474;MLEAC=3;MLEAF=0.375;MQ=12.69;MQ0=0;MQRankSum=-3.078;QD=0.88;ReadPosRankSum=3.967;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,4:27:15:66,0,15 0/0:21,8:29:9:0,9,94 0/1:22,6:28:21:21,0,52 0/1:19,5:24:21:26,0,21 +chr17 34863426 . C A 218.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.046;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5970;MLEAC=3;MLEAF=0.375;MQ=29.96;MQ0=0;MQRankSum=-1.224;QD=3.37;ReadPosRankSum=2.402;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,1:21:30:0,30,340 0/1:22,4:26:88:88,0,190 0/1:17,4:21:60:60,0,295 0/1:12,6:18:60:114,0,60 +chr17 34869155 rs8882 G A 535.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.595;DB;DP=62;Dels=0.02;FS=2.640;HaplotypeScore=2.0191;MLEAC=4;MLEAF=0.500;MQ=31.64;MQ0=0;MQRankSum=2.322;QD=11.15;ReadPosRankSum=-0.464;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:36:0,36,449 1/1:6,10:16:30:389,30,0 0/1:11,6:17:99:185,0,295 0/1:13,1:14:9:9,0,266 +chr17 34871797 . C T 174.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.947;DP=152;Dels=0.00;FS=16.980;HaplotypeScore=21.0151;MLEAC=3;MLEAF=0.375;MQ=26.45;MQ0=0;MQRankSum=0.923;QD=1.65;ReadPosRankSum=0.620;SB=8.492e-03 GT:AD:DP:GQ:PL 0/1:27,4:31:67:67,0,389 0/1:39,7:47:99:101,0,276 0/0:44,2:46:42:0,42,825 0/1:24,3:28:50:50,0,186 +chr17 34883924 . G T 42.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.387;DP=166;Dels=0.01;FS=23.150;HaplotypeScore=5.0787;MLEAC=1;MLEAF=0.125;MQ=34.40;MQ0=0;MQRankSum=-1.035;QD=1.13;ReadPosRankSum=-0.436;SB=-3.862e+00 GT:AD:DP:GQ:PL 0/1:33,4:38:79:79,0,502 0/0:42,1:43:32:0,32,708 0/0:44,0:44:87:0,87,1115 0/0:40,0:40:69:0,69,867 +chr17 34953325 . T C 565.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.498;DP=122;Dels=0.00;FS=2.499;HaplotypeScore=0.5984;MLEAC=4;MLEAF=0.500;MQ=31.96;MQ0=0;MQRankSum=0.599;QD=4.64;ReadPosRankSum=1.643;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,5:30:99:131,0,380 0/1:26,6:32:99:128,0,385 0/1:26,8:34:99:197,0,401 0/1:19,6:26:99:152,0,241 +chr17 34964933 . C G 58.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.271;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=1.4717;MLEAC=2;MLEAF=0.250;MQ=25.02;MQ0=0;MQRankSum=1.362;QD=3.45;ReadPosRankSum=0.537;SB=-3.475e+00 GT:AD:DP:GQ:PL 0/1:4,3:7:26:54,0,26 0/1:8,2:10:45:45,0,116 0/0:7,0:7:6:0,6,65 0/0:8,0:8:9:0,9,79 +chr17 35344116 . T A 164.15 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.811;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7102;MLEAC=5;MLEAF=0.625;MQ=27.23;MQ0=0;MQRankSum=0.058;QD=4.56;ReadPosRankSum=2.607;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,4:13:68:68,0,85 0/1:8,1:9:7:7,0,108 0/1:4,4:8:21:94,0,21 1/1:4,2:6:3:37,3,0 +chr17 35608889 rs1519091 G A 4279.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.061;DB;DP=136;Dels=0.00;FS=5.482;HaplotypeScore=1.2318;MLEAC=7;MLEAF=0.875;MQ=38.25;MQ0=0;MQRankSum=-4.559;QD=31.46;ReadPosRankSum=1.264;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:20,17:37:99:583,0,706 1/1:1,33:34:99:1331,99,0 1/1:3,35:38:99:1384,105,0 1/1:1,26:27:78:981,78,0 +chr17 35693085 rs7211305 T G 44.25 . AC=4;AF=0.667;AN=6;BaseQRankSum=3.755;DB;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=11.17;MQ0=0;MQRankSum=-2.958;QD=1.92;ReadPosRankSum=3.050;SB=4.75 GT:AD:DP:GQ:PL 0/0:12,2:14:3:0,3,44 1/1:1,7:8:3:41,3,0 ./. 1/1:3,12:15:3:41,3,0 +chr17 35783416 rs72828253 A G 787.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.171;DB;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4521;MLEAC=4;MLEAF=0.500;MQ=33.15;MQ0=0;MQRankSum=1.004;QD=6.51;ReadPosRankSum=2.486;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,6:32:99:157,0,808 0/1:35,7:42:99:143,0,1022 0/1:20,14:34:99:417,0,446 0/1:8,5:13:99:113,0,142 +chr17 35836819 . T C 267.86 . AC=3;AF=0.500;AN=6;BaseQRankSum=2.946;DP=38;Dels=0.00;FS=7.877;HaplotypeScore=3.4402;MLEAC=3;MLEAF=0.500;MQ=23.73;MQ0=0;MQRankSum=1.519;QD=7.44;ReadPosRankSum=0.837;SB=3.98 GT:AD:DP:GQ:PL 0/1:4,6:10:7:156,0,7 0/1:9,3:12:36:61,0,36 0/1:9,4:14:11:89,0,11 ./. +chr17 36058980 rs2269843 C T 2656.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.325;DB;DP=75;Dels=0.00;FS=25.922;HaplotypeScore=0.4988;MLEAC=8;MLEAF=1.00;MQ=39.04;MQ0=0;MQRankSum=3.325;QD=35.43;ReadPosRankSum=2.401;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:60:836,60,0 1/1:4,13:17:39:535,39,0 1/1:3,16:19:48:663,48,0 1/1:3,16:19:48:662,48,0 +chr17 36288541 . G A 50.52 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.388;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.9010;MLEAC=3;MLEAF=0.375;MQ=19.27;MQ0=0;MQRankSum=1.306;QD=0.75;ReadPosRankSum=1.823;SB=1.20 GT:AD:DP:GQ:PL 0/1:16,3:19:22:22,0,242 0/1:25,3:29:37:37,0,249 0/0:23,1:24:4:0,4,281 0/1:15,4:19:33:33,0,141 +chr17 36291943 . C A 32.98 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.037;DP=140;Dels=0.01;FS=28.890;HaplotypeScore=10.2401;MLEAC=2;MLEAF=0.250;MQ=24.15;MQ0=0;MQRankSum=1.239;QD=0.44;ReadPosRankSum=0.308;SB=-4.472e+00 GT:AD:DP:GQ:PL 0/0:27,2:29:19:0,19,335 0/1:31,2:33:3:3,0,447 0/0:35,0:36:51:0,51,504 0/1:37,4:41:67:67,0,404 +chr17 36353761 rs62074778 C T 57.27 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.953;DB;DP=184;Dels=0.00;FS=4.632;HaplotypeScore=1.6872;MLEAC=4;MLEAF=0.500;MQ=8.54;MQ0=0;MQRankSum=-1.836;QD=0.58;ReadPosRankSum=2.748;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:27,16:43:6:46,6,0 0/0:42,6:48:3:0,3,30 0/1:37,18:55:53:53,0,77 0/0:30,8:38:3:0,3,28 +chr17 36491937 . C A 110.17 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.394;DP=98;Dels=0.01;FS=27.231;HaplotypeScore=27.0133;MLEAC=4;MLEAF=0.500;MQ=22.34;MQ0=0;MQRankSum=0.481;QD=1.12;ReadPosRankSum=0.119;SB=-5.805e-01 GT:AD:DP:GQ:PL 0/1:21,3:24:59:59,0,167 0/1:17,3:20:8:8,0,185 0/1:27,5:32:66:66,0,341 0/1:17,4:21:19:19,0,234 +chr17 36714614 . C T 77.48 . AC=3;AF=0.500;AN=6;BaseQRankSum=2.646;DP=28;Dels=0.04;FS=3.245;HaplotypeScore=4.2983;MLEAC=3;MLEAF=0.500;MQ=20.57;MQ0=0;MQRankSum=0.635;QD=3.87;ReadPosRankSum=0.212;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:2,4:6:17:75,0,17 0/1:4,2:6:18:26,0,18 0/1:4,3:7:15:15,0,36 +chr17 36927239 . T G 97.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.149;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5265;MLEAC=3;MLEAF=0.375;MQ=30.58;MQ0=0;MQRankSum=-1.202;QD=1.85;ReadPosRankSum=-0.594;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,2:12:21:0,21,225 0/1:14,1:15:17:17,0,133 0/1:15,3:18:41:41,0,242 0/1:15,5:20:83:83,0,203 +chr17 37071366 . C A 158.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.138;DP=138;Dels=0.00;FS=7.240;HaplotypeScore=3.6315;MLEAC=3;MLEAF=0.375;MQ=31.34;MQ0=0;MQRankSum=-2.342;QD=1.56;ReadPosRankSum=0.195;SB=-1.691e-02 GT:AD:DP:GQ:PL 0/1:28,4:32:44:44,0,541 0/0:34,2:36:41:0,41,815 0/1:36,3:39:23:23,0,707 0/1:20,8:31:99:135,0,354 +chr17 37101217 . T C 35.71 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.937;DP=76;Dels=0.01;FS=41.487;HaplotypeScore=6.3969;MLEAC=3;MLEAF=0.375;MQ=31.74;MQ0=0;MQRankSum=-1.627;QD=0.63;ReadPosRankSum=3.332;SB=0.568 GT:AD:DP:GQ:PL 0/1:21,2:25:17:17,0,500 0/0:16,2:19:8:0,8,426 0/1:22,3:25:39:39,0,366 0/1:4,1:6:22:22,0,68 +chr17 37187992 . T G 33.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.799;DP=124;Dels=0.00;FS=14.151;HaplotypeScore=17.2015;MLEAC=1;MLEAF=0.125;MQ=25.51;MQ0=0;MQRankSum=0.609;QD=1.31;ReadPosRankSum=0.119;SB=7.869e-03 GT:AD:DP:GQ:PL 0/0:31,0:31:51:0,51,613 0/0:33,1:34:45:0,45,513 0/0:33,0:33:48:0,48,585 0/1:23,3:26:70:70,0,247 +chr17 37198896 . A T 36.06 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.421;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.3322;MLEAC=5;MLEAF=0.833;MQ=15.17;MQ0=0;MQRankSum=0.421;QD=3.28;ReadPosRankSum=0.922;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,3:7:6:52,6,0 0/0:3,0:3:3:0,3,23 1/1:3,1:4:3:23,3,0 ./. +chr17 37288226 . C A 165.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.303;DP=114;Dels=0.00;FS=48.652;HaplotypeScore=1.7405;MLEAC=3;MLEAF=0.375;MQ=32.49;MQ0=0;MQRankSum=-3.464;QD=1.93;ReadPosRankSum=2.003;SB=0.691 GT:AD:DP:GQ:PL 0/1:22,4:26:64:64,0,434 0/1:28,6:34:17:17,0,494 0/0:26,2:28:24:0,24,531 0/1:21,5:26:99:128,0,435 +chr17 37343761 . C G 96.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.756;DP=165;Dels=0.00;FS=21.231;HaplotypeScore=5.3487;MLEAC=3;MLEAF=0.375;MQ=31.71;MQ0=0;MQRankSum=-3.294;QD=0.77;ReadPosRankSum=0.311;SB=0.317 GT:AD:DP:GQ:PL 0/0:35,4:39:25:0,25,868 0/1:38,4:43:10:10,0,916 0/1:39,7:47:79:79,0,962 0/1:30,6:36:50:50,0,669 +chr17 37358662 . G C 44.26 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.734;DP=109;Dels=0.00;FS=15.396;HaplotypeScore=1.2568;MLEAC=6;MLEAF=0.750;MQ=10.70;MQ0=0;MQRankSum=2.370;QD=0.51;ReadPosRankSum=-2.873;SB=5.98 GT:AD:DP:GQ:PL 0/0:23,0:23:3:0,3,31 1/1:28,2:30:3:31,3,0 1/1:29,1:30:3:30,3,0 1/1:23,3:26:3:24,3,0 +chr17 37425262 rs1966915 A C 132.24 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.922;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=27.12;MQ0=0;MQRankSum=0.198;QD=14.69;ReadPosRankSum=0.922;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,1:2:33:33,0,35 1/1:2,2:4:6:71,6,0 1/1:1,1:2:3:37,3,0 1/1:0,1:1:3:32,3,0 +chr17 37557588 . G C 69.28 . AC=5;AF=0.833;AN=6;BaseQRankSum=-0.876;DP=18;Dels=0.00;FS=10.925;HaplotypeScore=2.3690;MLEAC=5;MLEAF=0.833;MQ=19.59;MQ0=0;MQRankSum=1.159;QD=4.95;ReadPosRankSum=0.729;SB=3.38 GT:AD:DP:GQ:PL ./. 0/1:4,1:5:24:24,0,64 1/1:3,1:5:3:28,3,0 1/1:2,2:4:6:56,6,0 +chr17 37596589 . T A 59.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.649;DP=105;Dels=0.04;FS=69.749;HaplotypeScore=11.1213;MLEAC=3;MLEAF=0.375;MQ=29.11;MQ0=0;MQRankSum=-1.216;QD=0.72;ReadPosRankSum=-0.193;SB=3.20 GT:AD:DP:GQ:PL 0/0:22,0:23:36:0,36,473 0/1:22,2:25:14:14,0,574 0/1:28,4:34:39:39,0,581 0/1:16,3:19:49:49,0,233 +chr17 37687201 . A T 129.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.366;DP=106;Dels=0.00;FS=51.454;HaplotypeScore=2.1165;MLEAC=3;MLEAF=0.375;MQ=35.13;MQ0=0;MQRankSum=0.106;QD=1.60;ReadPosRankSum=-1.619;SB=-1.034e+00 GT:AD:DP:GQ:PL 0/1:22,2:24:5:5,0,681 0/1:23,5:28:90:90,0,520 0/1:25,4:29:76:76,0,635 0/0:24,1:25:15:0,15,661 +chr17 37778497 . G A 86.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.118;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4776;MLEAC=3;MLEAF=0.375;MQ=32.18;MQ0=0;MQRankSum=1.537;QD=1.35;ReadPosRankSum=-0.775;SB=0.105 GT:AD:DP:GQ:PL 0/1:16,1:17:10:10,0,160 0/1:19,4:23:98:98,0,399 0/1:22,2:24:21:21,0,345 0/0:9,0:9:15:0,15,164 +chr17 37790047 . A C 1282.84 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.075;DP=96;Dels=0.00;FS=25.876;HaplotypeScore=6.3685;MLEAC=5;MLEAF=0.625;MQ=27.53;MQ0=0;MQRankSum=4.196;QD=13.36;ReadPosRankSum=1.063;SB=2.16 GT:AD:DP:GQ:PL 1/1:11,14:25:15:438,15,0 0/1:17,9:26:66:226,0,66 0/1:12,12:24:73:305,0,73 0/1:8,13:21:34:359,0,34 +chr17 37790115 . C G 67.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.638;DP=175;Dels=0.01;FS=20.834;HaplotypeScore=4.8962;MLEAC=3;MLEAF=0.375;MQ=31.64;MQ0=0;MQRankSum=0.202;QD=0.56;ReadPosRankSum=-1.857;SB=-1.275e-01 GT:AD:DP:GQ:PL 0/1:41,5:46:67:67,0,671 0/0:53,0:53:84:0,84,878 0/1:34,3:37:26:26,0,611 0/1:34,3:37:18:18,0,699 +chr17 37814083 . T A 40.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.156;DP=85;Dels=0.04;FS=12.500;HaplotypeScore=26.5188;MLEAC=3;MLEAF=0.375;MQ=26.35;MQ0=0;MQRankSum=-0.322;QD=0.66;ReadPosRankSum=-0.170;SB=-8.061e-03 GT:AD:DP:GQ:PL 0/0:22,0:23:48:0,48,538 0/1:19,2:21:29:29,0,158 0/1:19,2:22:32:32,0,107 0/1:15,1:16:23:23,0,45 +chr17 37864773 . T C 76.71 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.481;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=18.1428;MLEAC=3;MLEAF=0.375;MQ=22.85;MQ0=0;MQRankSum=-0.192;QD=0.95;ReadPosRankSum=2.785;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,5:29:55:55,0,367 0/1:23,2:25:2:2,0,203 0/1:22,4:26:60:60,0,157 0/0:19,1:20:21:0,21,195 +chr17 37881537 . C A 119.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.176;DP=146;Dels=0.00;FS=26.779;HaplotypeScore=5.1005;MLEAC=3;MLEAF=0.375;MQ=30.05;MQ0=0;MQRankSum=-0.507;QD=1.09;ReadPosRankSum=-0.026;SB=-5.082e-01 GT:AD:DP:GQ:PL 0/1:27,2:29:1:1,0,683 0/1:36,4:40:55:55,0,608 0/0:35,2:37:25:0,25,828 0/1:34,6:40:99:103,0,646 +chr17 38024879 . C G 63.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.191;DP=120;Dels=0.01;FS=4.596;HaplotypeScore=9.8691;MLEAC=2;MLEAF=0.250;MQ=32.97;MQ0=0;MQRankSum=-3.191;QD=1.12;ReadPosRankSum=1.150;SB=6.122e-03 GT:AD:DP:GQ:PL 0/1:30,5:35:80:80,0,670 0/0:29,0:29:66:0,66,834 0/0:32,1:33:29:0,29,634 0/1:19,3:22:25:25,0,491 +chr17 38080314 . A T 55.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.057;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.6165;MLEAC=3;MLEAF=0.375;MQ=23.49;MQ0=0;MQRankSum=0.739;QD=1.63;ReadPosRankSum=-0.966;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:51:51,0,82 0/1:15,1:16:11:11,0,128 0/0:13,0:13:24:0,24,263 0/1:6,2:8:36:36,0,102 +chr17 38121886 . G C 124.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.890;DP=62;Dels=0.03;FS=3.904;HaplotypeScore=2.6334;MLEAC=4;MLEAF=0.500;MQ=35.44;MQ0=0;MQRankSum=0.602;QD=2.01;ReadPosRankSum=-1.554;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:33:33,0,279 0/1:18,4:22:49:49,0,239 0/1:13,3:16:63:63,0,224 0/1:10,1:11:22:22,0,30 +chr17 38129044 . G A 276.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.496;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=29.0523;MLEAC=4;MLEAF=0.500;MQ=25.56;MQ0=0;MQRankSum=3.345;QD=2.16;ReadPosRankSum=-2.122;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,5:32:99:113,0,387 0/1:33,5:38:50:50,0,974 0/1:31,4:35:55:55,0,480 0/1:19,4:23:99:101,0,205 +chr17 38131299 . C T 31.32 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.960;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=10.5169;MLEAC=1;MLEAF=0.125;MQ=30.23;MQ0=0;MQRankSum=-1.779;QD=1.16;ReadPosRankSum=1.824;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,1:24:17:0,17,464 0/0:25,0:25:54:0,54,644 0/1:23,4:27:67:67,0,286 0/0:18,1:19:6:0,6,331 +chr17 38153525 . C A 89.65 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.140;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=3.5833;MLEAC=3;MLEAF=0.375;MQ=29.49;MQ0=0;MQRankSum=-2.845;QD=1.08;ReadPosRankSum=-0.748;SB=-2.011e+00 GT:AD:DP:GQ:PL 0/1:27,2:29:1:1,0,570 0/1:18,8:26:99:118,0,306 0/0:27,3:30:2:0,2,594 0/1:23,3:27:7:7,0,429 +chr17 38186110 . T G 47.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.258;DP=118;Dels=0.00;FS=2.241;HaplotypeScore=1.7343;MLEAC=3;MLEAF=0.375;MQ=35.05;MQ0=0;MQRankSum=-2.296;QD=0.53;ReadPosRankSum=-1.172;SB=-1.014e+00 GT:AD:DP:GQ:PL 0/1:27,2:29:4:4,0,620 0/0:29,1:30:55:0,55,853 0/1:30,4:34:67:67,0,723 0/1:22,3:25:17:17,0,584 +chr17 38187656 . G T 52.45 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.843;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.1172;MLEAC=2;MLEAF=0.250;MQ=22.84;MQ0=0;MQRankSum=1.654;QD=3.09;ReadPosRankSum=-0.898;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:9:11:11,0,120 0/0:3,0:3:6:0,6,67 0/1:5,3:8:53:80,0,53 0/0:3,0:3:3:0,3,24 +chr17 38188419 rs3935281 C T 727.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.337;DB;DP=104;Dels=0.00;FS=2.761;HaplotypeScore=0.9813;MLEAC=4;MLEAF=0.500;MQ=30.46;MQ0=0;MQRankSum=-1.765;QD=7.00;ReadPosRankSum=-0.242;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,10:25:99:230,0,372 0/1:22,4:26:91:91,0,468 0/1:18,13:31:99:352,0,322 0/1:17,5:22:97:97,0,343 +chr17 38192125 . C G 64.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.875;DP=34;Dels=0.00;FS=2.682;HaplotypeScore=0.4883;MLEAC=4;MLEAF=0.500;MQ=27.02;MQ0=0;MQRankSum=-0.525;QD=2.16;ReadPosRankSum=0.455;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:40:40,0,63 0/1:12,2:14:15:15,0,183 1/1:6,2:8:6:53,6,0 0/0:4,0:4:3:0,3,39 +chr17 38320244 . T A 156.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.156;DP=197;Dels=0.01;FS=66.962;HaplotypeScore=5.5094;MLEAC=3;MLEAF=0.375;MQ=29.53;MQ0=0;MQRankSum=-1.099;QD=1.11;ReadPosRankSum=-2.400;SB=0.661 GT:AD:DP:GQ:PL 0/1:36,3:39:26:26,0,760 0/1:45,5:50:50:50,0,800 0/0:53,3:56:17:0,17,1115 0/1:44,7:51:99:124,0,704 +chr17 38560838 . T G 40.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.018;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=4.8630;MLEAC=3;MLEAF=0.375;MQ=28.55;MQ0=0;MQRankSum=-3.022;QD=0.77;ReadPosRankSum=2.020;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,1:23:2:0,2,264 0/1:21,2:23:11:11,0,334 0/1:19,3:22:50:50,0,261 0/1:6,1:7:20:20,0,94 +chr17 38715121 . G A 236.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.602;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=10.0499;MLEAC=4;MLEAF=0.500;MQ=28.02;MQ0=0;MQRankSum=-1.003;QD=3.76;ReadPosRankSum=-0.306;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,4:18:78:78,0,222 0/1:9,1:10:23:23,0,146 0/1:15,4:19:78:78,0,339 0/1:10,5:15:96:100,0,96 +chr17 38953197 . C A 224.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.054;DP=120;Dels=0.01;FS=11.172;HaplotypeScore=16.4457;MLEAC=4;MLEAF=0.500;MQ=27.93;MQ0=0;MQRankSum=0.335;QD=1.87;ReadPosRankSum=2.280;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:24,4:28:94:94,0,125 0/1:28,3:32:57:57,0,346 0/1:27,3:30:31:31,0,194 0/1:26,3:29:85:85,0,101 +chr17 39080787 . T A 64.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.710;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.5108;MLEAC=2;MLEAF=0.250;MQ=35.47;MQ0=0;MQRankSum=-1.177;QD=1.22;ReadPosRankSum=0.726;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,2:19:19:19,0,360 0/0:31,1:32:32:0,32,648 0/1:29,5:34:87:87,0,379 0/0:10,0:10:18:0,18,216 +chr17 39316653 . C T 61.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.152;DP=171;Dels=0.02;FS=7.532;HaplotypeScore=7.3065;MLEAC=4;MLEAF=0.500;MQ=17.60;MQ0=0;MQRankSum=0.734;QD=0.49;ReadPosRankSum=1.912;SB=-6.145e+01 GT:AD:DP:GQ:PL 0/1:32,4:36:41:41,0,168 0/1:38,5:43:16:16,0,370 0/0:42,3:45:1:0,1,264 0/1:39,4:43:45:45,0,150 +chr17 39340988 . A G 161.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.570;DP=142;Dels=0.00;FS=25.069;HaplotypeScore=9.3371;MLEAC=3;MLEAF=0.375;MQ=23.35;MQ0=0;MQRankSum=2.257;QD=1.63;ReadPosRankSum=-0.101;SB=0.096 GT:AD:DP:GQ:PL 0/1:28,5:33:82:82,0,360 0/1:35,2:38:5:5,0,309 0/0:41,2:43:19:0,19,602 0/1:23,5:28:99:116,0,257 +chr17 39346490 . T A 48.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.586;DP=114;Dels=0.01;FS=7.153;HaplotypeScore=6.3865;MLEAC=3;MLEAF=0.375;MQ=30.67;MQ0=0;MQRankSum=-1.715;QD=0.57;ReadPosRankSum=-0.324;SB=-9.367e+00 GT:AD:DP:GQ:PL 0/1:23,4:27:58:58,0,579 0/0:28,2:30:31:0,31,624 0/1:26,2:28:13:13,0,517 0/1:25,3:28:20:20,0,417 +chr17 39389058 . G C 65.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.077;DP=171;Dels=0.00;FS=27.098;HaplotypeScore=2.0371;MLEAC=4;MLEAF=0.500;MQ=14.73;MQ0=0;MQRankSum=3.807;QD=0.38;ReadPosRankSum=-1.045;SB=-1.171e-01 GT:AD:DP:GQ:PL 0/1:45,1:46:14:14,0,132 0/1:42,2:44:35:35,0,52 0/1:44,2:46:43:43,0,149 0/1:33,2:35:16:16,0,24 +chr17 39421665 . C A 252.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.526;DP=228;Dels=0.00;FS=15.987;HaplotypeScore=12.2288;MLEAC=4;MLEAF=0.500;MQ=18.44;MQ0=0;MQRankSum=2.481;QD=1.11;ReadPosRankSum=3.964;SB=-1.236e-02 GT:AD:DP:GQ:PL 0/1:39,8:49:99:136,0,212 0/1:43,5:52:37:37,0,201 0/1:57,5:64:25:25,0,170 0/1:53,7:62:97:97,0,234 +chr17 39464375 . G T 573.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.182;DP=107;Dels=0.00;FS=48.104;HaplotypeScore=6.9167;MLEAC=4;MLEAF=0.500;MQ=30.75;MQ0=0;MQRankSum=0.230;QD=5.36;ReadPosRankSum=-1.628;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/1:18,8:26:99:214,0,240 0/1:18,6:24:99:139,0,328 0/1:25,5:30:94:94,0,463 0/1:19,8:27:99:169,0,373 +chr17 39465155 . G A 35.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.422;DP=128;Dels=0.02;FS=30.038;HaplotypeScore=7.9838;MLEAC=2;MLEAF=0.250;MQ=23.44;MQ0=0;MQRankSum=-0.187;QD=0.51;ReadPosRankSum=0.663;SB=1.24 GT:AD:DP:GQ:PL 0/0:28,3:31:5:0,5,244 0/1:32,6:38:50:50,0,499 0/1:29,2:31:26:26,0,229 0/0:25,1:26:30:0,30,350 +chr17 39552793 . T A 98.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.549;DP=148;Dels=0.03;FS=61.109;HaplotypeScore=10.7716;MLEAC=4;MLEAF=0.500;MQ=13.69;MQ0=0;MQRankSum=4.357;QD=0.67;ReadPosRankSum=-2.036;SB=0.345 GT:AD:DP:GQ:PL 0/1:36,4:40:14:14,0,123 0/1:25,4:29:20:20,0,68 0/1:31,6:37:25:49,0,25 0/1:33,5:38:58:58,0,59 +chr17 39553538 . T G 81.78 . AC=4;AF=0.667;AN=6;BaseQRankSum=-2.410;DP=48;Dels=0.00;FS=39.882;HaplotypeScore=2.6256;MLEAC=4;MLEAF=0.667;MQ=12.16;MQ0=0;MQRankSum=2.616;QD=2.73;ReadPosRankSum=-0.268;SB=1.45 GT:AD:DP:GQ:PL ./. 1/1:15,1:16:3:33,3,0 0/0:11,0:12:6:0,6,51 1/1:9,5:14:9:90,9,0 +chr17 39594934 rs143673973 AC ACC,A 1120.74 . AC=3,4;AF=0.375,0.500;AN=8;BaseQRankSum=-0.816;DB;DP=124;FS=2.407;HaplotypeScore=14.8036;MLEAC=3,4;MLEAF=0.375,0.500;MQ=20.56;MQ0=0;MQRankSum=-2.077;QD=9.04;RPA=8,9,7;RU=C;ReadPosRankSum=1.590;SB=-2.790e+02;STR GT:AD:DP:GQ:PL 0/2:14,0,15:16:54:198,172,331,0,54,111 1/2:10,0,19:16:35:461,442,542,61,0,35 1/2:11,0,20:19:99:382,244,346,128,0,202 1/2:4,0,13:8:23:181,166,200,31,0,23 +chr17 39620399 rs12948056 C T 1445.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.406;DB;DP=151;Dels=0.00;FS=6.949;HaplotypeScore=2.2783;MLEAC=4;MLEAF=0.500;MQ=37.70;MQ0=0;MQRankSum=-0.370;QD=9.57;ReadPosRankSum=1.609;SB=-6.790e+02 GT:AD:DP:GQ:PL 0/1:18,8:26:99:258,0,491 0/1:26,13:39:99:409,0,678 0/1:32,18:50:99:568,0,1032 0/1:27,9:36:99:253,0,691 +chr17 39620655 . T A 40.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.521;DP=93;Dels=0.00;FS=57.327;HaplotypeScore=2.3830;MLEAC=2;MLEAF=0.250;MQ=35.73;MQ0=0;MQRankSum=-3.118;QD=0.78;ReadPosRankSum=1.000;SB=4.54 GT:AD:DP:GQ:PL 0/1:30,4:34:27:27,0,807 0/1:15,3:18:55:55,0,425 0/0:26,0:26:63:0,63,854 0/0:15,0:15:24:0,24,315 +chr17 39622149 . A G 271.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.699;DP=91;Dels=0.03;FS=70.314;HaplotypeScore=19.7617;MLEAC=4;MLEAF=0.500;MQ=25.25;MQ0=0;MQRankSum=-0.409;QD=2.98;ReadPosRankSum=-0.939;SB=0.296 GT:AD:DP:GQ:PL 0/1:11,8:19:99:177,0,143 0/1:21,2:23:26:26,0,234 0/1:19,6:25:22:22,0,229 0/1:16,5:21:89:89,0,281 +chr17 39633214 . G C 31.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.143;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=15.6634;MLEAC=1;MLEAF=0.125;MQ=23.68;MQ0=0;MQRankSum=-0.367;QD=1.72;ReadPosRankSum=-0.703;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:33:0,33,363 0/0:15,1:17:21:0,21,204 0/0:22,1:23:18:0,18,456 0/1:14,4:18:67:67,0,170 +chr17 39659913 rs9891361 G A 726.94 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.904;DB;DP=201;Dels=0.01;FS=32.184;HaplotypeScore=3.1846;MLEAC=8;MLEAF=1.00;MQ=13.67;MQ0=0;MQRankSum=0.909;QD=3.62;ReadPosRankSum=2.071;SB=-3.072e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:33:293,33,0 1/1:4,50:54:15:133,15,0 1/1:5,56:61:2:256,2,0 1/1:3,27:30:9:83,9,0 +chr17 39680856 . A C 600.43 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.044;DP=78;Dels=0.01;FS=22.127;HaplotypeScore=6.0086;MLEAC=4;MLEAF=0.500;MQ=21.85;MQ0=0;MQRankSum=2.101;QD=7.70;ReadPosRankSum=0.417;SB=-1.169e-02 GT:AD:DP:GQ:PL 0/1:13,5:18:7:136,0,7 0/1:10,13:23:99:193,0,102 0/1:14,9:23:74:183,0,74 0/1:6,7:13:7:130,0,7 +chr17 39767005 . C A 52.98 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.407;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=5.7648;MLEAC=5;MLEAF=0.625;MQ=19.41;MQ0=0;MQRankSum=0.781;QD=0.73;ReadPosRankSum=1.551;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,5:21:49:49,0,151 0/1:15,2:17:12:12,0,137 0/1:19,2:21:12:12,0,101 1/1:12,1:13:3:22,3,0 +chr17 39881996 . A T 98.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.237;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5953;MLEAC=3;MLEAF=0.375;MQ=31.32;MQ0=0;MQRankSum=-2.828;QD=2.19;ReadPosRankSum=1.970;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,1:23:14:0,14,481 0/1:12,3:15:55:55,0,189 0/1:13,4:18:75:75,0,196 0/1:11,1:12:11:11,0,170 +chr17 39959511 rs3809877 C T 1628.79 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.987;DB;DP=76;Dels=0.00;FS=13.392;HaplotypeScore=0.4142;MLEAC=6;MLEAF=0.750;MQ=32.89;MQ0=0;MQRankSum=-2.454;QD=21.43;ReadPosRankSum=0.999;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:11,9:20:99:273,0,333 0/1:9,6:15:99:146,0,216 1/1:2,18:20:30:634,30,0 1/1:2,19:21:36:622,36,0 +chr17 39976042 . A C 229.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.794;DP=165;Dels=0.00;FS=11.272;HaplotypeScore=1.4623;MLEAC=3;MLEAF=0.375;MQ=37.91;MQ0=0;MQRankSum=-3.482;QD=1.81;ReadPosRankSum=-0.357;SB=-9.948e-03 GT:AD:DP:GQ:PL 0/0:37,1:38:46:0,46,989 0/1:38,7:45:99:146,0,920 0/1:36,5:42:49:49,0,937 0/1:34,6:40:78:78,0,834 +chr17 39987161 . G A 147.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.259;DP=153;Dels=0.02;FS=4.620;HaplotypeScore=3.8858;MLEAC=2;MLEAF=0.250;MQ=27.08;MQ0=0;MQRankSum=-0.894;QD=2.42;ReadPosRankSum=0.165;SB=-4.868e-01 GT:AD:DP:GQ:PL 0/1:31,5:36:99:101,0,312 0/0:36,2:38:3:0,3,515 0/0:49,2:51:8:0,8,569 0/1:21,4:25:86:86,0,128 +chr17 40025285 rs9914829 A G 6806.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.938;DB;DP=210;Dels=0.00;FS=16.099;HaplotypeScore=2.6735;MLEAC=8;MLEAF=1.00;MQ=35.47;MQ0=0;MQRankSum=-0.417;QD=32.41;ReadPosRankSum=4.342;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:5,50:55:62:1730,62,0 1/1:3,58:61:99:1985,105,0 1/1:5,58:63:53:2112,53,0 1/1:4,27:31:78:979,78,0 +chr17 40063786 . G A 140.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.713;DP=93;Dels=0.00;FS=46.978;HaplotypeScore=12.1658;MLEAC=3;MLEAF=0.375;MQ=29.32;MQ0=0;MQRankSum=-3.965;QD=2.01;ReadPosRankSum=1.811;SB=0.067 GT:AD:DP:GQ:PL 0/0:23,0:23:33:0,33,402 0/1:11,7:18:80:80,0,148 0/1:23,5:28:54:54,0,415 0/1:20,4:24:50:50,0,453 +chr17 40141440 . C G 377.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.090;DP=279;Dels=0.00;FS=103.690;HaplotypeScore=9.4642;MLEAC=4;MLEAF=0.500;MQ=36.16;MQ0=0;MQRankSum=-3.139;QD=1.35;ReadPosRankSum=0.903;SB=-1.903e-02 GT:AD:DP:GQ:PL 0/1:64,9:73:99:117,0,1762 0/1:62,5:67:27:27,0,1634 0/1:68,9:77:99:101,0,1972 0/1:53,9:62:99:175,0,1183 +chr17 40175959 . G A 113.29 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.814;DP=82;Dels=0.00;FS=2.421;HaplotypeScore=1.6619;MLEAC=4;MLEAF=0.500;MQ=31.05;MQ0=0;MQRankSum=-1.185;QD=1.38;ReadPosRankSum=1.814;SB=-3.531e-01 GT:AD:DP:GQ:PL 0/1:19,2:21:36:36,0,290 0/1:18,1:19:7:7,0,242 0/1:22,2:24:20:20,0,345 0/1:14,4:18:92:92,0,195 +chr17 40253714 . C T 52.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.329;DP=47;Dels=0.00;FS=5.620;HaplotypeScore=7.9695;MLEAC=4;MLEAF=0.500;MQ=17.79;MQ0=0;MQRankSum=0.231;QD=1.11;ReadPosRankSum=-1.252;SB=0.091 GT:AD:DP:GQ:PL 0/1:6,2:8:12:12,0,59 0/1:11,2:13:14:14,0,70 0/1:11,5:16:14:14,0,47 0/1:6,4:10:47:54,0,47 +chr17 40267149 . C G 81.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.292;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=11.3778;MLEAC=4;MLEAF=0.500;MQ=20.74;MQ0=0;MQRankSum=0.518;QD=1.94;ReadPosRankSum=0.421;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:16:45:45,0,55 0/0:17,1:18:15:0,15,169 0/1:12,1:13:12:12,0,158 1/1:10,3:13:9:71,9,0 +chr17 40270238 rs2074164 G C 307.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.558;DB;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.0878;MLEAC=3;MLEAF=0.375;MQ=29.99;MQ0=0;MQRankSum=-2.807;QD=5.40;ReadPosRankSum=0.382;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,7:24:99:159,0,391 0/0:16,0:16:36:0,36,447 0/1:10,4:14:94:94,0,149 0/1:11,8:19:98:98,0,191 +chr17 40321733 . CCT C 158.85 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.134;DP=36;FS=0.000;HaplotypeScore=11.2538;MLEAC=5;MLEAF=0.625;MQ=17.06;MQ0=0;MQRankSum=-1.134;QD=4.41;RPA=2,1;RU=CT;ReadPosRankSum=0.689;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:5,1:2:17:39,0,17 1/1:5,1:3:3:45,3,0 0/1:9,1:4:0:28,0,0 0/1:9,3:7:33:96,0,33 +chr17 40622255 . T A 48.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.925;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.2709;MLEAC=2;MLEAF=0.250;MQ=33.45;MQ0=0;MQRankSum=0.714;QD=1.69;ReadPosRankSum=-1.707;SB=-1.178e-02 GT:AD:DP:GQ:PL 0/1:19,4:23:79:79,0,437 0/0:24,0:25:48:0,48,568 0/0:23,1:24:14:0,14,452 0/1:5,1:6:10:10,0,122 +chr17 40629813 . T A 56.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.242;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1579;MLEAC=3;MLEAF=0.375;MQ=33.01;MQ0=0;MQRankSum=-1.347;QD=0.66;ReadPosRankSum=-0.579;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,1:22:11:0,11,506 0/1:34,2:36:3:3,0,536 0/1:31,2:33:6:6,0,654 0/1:13,3:16:86:86,0,141 +chr17 40639138 . A C 270.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.643;DP=145;Dels=0.00;FS=2.309;HaplotypeScore=2.6005;MLEAC=3;MLEAF=0.375;MQ=34.17;MQ0=0;MQRankSum=-1.753;QD=2.31;ReadPosRankSum=2.712;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:38,8:46:99:152,0,476 0/0:26,2:28:11:0,11,458 0/1:39,3:42:32:32,0,783 0/1:23,6:29:99:129,0,329 +chr17 40714784 . G T 35.07 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.220;DP=53;Dels=0.00;FS=5.184;HaplotypeScore=6.5243;MLEAC=3;MLEAF=0.375;MQ=27.07;MQ0=0;MQRankSum=0.100;QD=0.90;ReadPosRankSum=-0.781;SB=0.219 GT:AD:DP:GQ:PL 0/1:14,1:15:20:20,0,111 0/1:12,3:15:41:41,0,208 0/0:14,0:14:18:0,18,199 0/1:7,2:9:17:17,0,77 +chr17 40716380 . G A 59.91 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.268;DP=47;Dels=0.04;FS=6.368;HaplotypeScore=10.6743;MLEAC=4;MLEAF=0.500;MQ=19.82;MQ0=0;MQRankSum=-0.415;QD=1.27;ReadPosRankSum=0.268;SB=-1.441e+00 GT:AD:DP:GQ:PL 0/1:7,4:11:25:25,0,27 0/1:12,2:14:21:21,0,58 0/1:10,3:13:11:11,0,94 0/1:3,3:7:29:45,0,29 +chr17 40734081 . A T 500.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.184;DP=90;Dels=0.00;FS=70.280;HaplotypeScore=8.7421;MLEAC=4;MLEAF=0.500;MQ=30.19;MQ0=0;MQRankSum=-0.274;QD=5.56;ReadPosRankSum=1.447;SB=0.075 GT:AD:DP:GQ:PL 0/1:16,4:20:99:100,0,273 0/1:13,5:18:99:115,0,291 0/1:17,9:26:99:204,0,347 0/1:20,6:26:99:124,0,208 +chr17 40811781 rs2292750 C T 1238.73 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.215;DB;DP=53;Dels=0.00;FS=32.613;HaplotypeScore=1.3260;MLEAC=7;MLEAF=0.875;MQ=33.41;MQ0=0;MQRankSum=0.076;QD=23.37;ReadPosRankSum=-0.076;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,8:16:99:243,0,257 1/1:3,16:19:42:548,42,0 1/1:0,10:10:27:348,27,0 1/1:4,4:8:12:144,12,0 +chr17 40817582 . T G 91.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.683;DP=150;Dels=0.01;FS=4.710;HaplotypeScore=5.7625;MLEAC=3;MLEAF=0.375;MQ=16.50;MQ0=0;MQRankSum=2.857;QD=0.79;ReadPosRankSum=0.552;SB=1.56 GT:AD:DP:GQ:PL 0/0:33,0:33:9:0,9,91 0/1:41,2:43:14:14,0,82 0/1:31,5:36:18:97,0,18 1/1:35,1:36:3:24,3,0 +chr17 40859916 . C G 56.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.656;DP=249;Dels=0.00;FS=21.446;HaplotypeScore=1.7197;MLEAC=2;MLEAF=0.250;MQ=38.47;MQ0=0;MQRankSum=-4.095;QD=0.56;ReadPosRankSum=1.860;SB=-6.141e+00 GT:AD:DP:GQ:PL 0/1:40,3:43:3:3,0,1042 0/0:71,2:73:78:0,78,1744 0/0:69,5:74:39:0,39,2001 0/1:52,6:58:91:91,0,1217 +chr17 40864445 . T G 93.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.289;DP=242;Dels=0.00;FS=51.105;HaplotypeScore=2.1046;MLEAC=2;MLEAF=0.250;MQ=37.27;MQ0=0;MQRankSum=-4.346;QD=0.76;ReadPosRankSum=-0.826;SB=0.677 GT:AD:DP:GQ:PL 0/0:52,3:55:31:0,31,1316 0/1:50,5:55:15:15,0,1280 0/0:61,2:63:83:0,83,1737 0/1:59,9:68:99:119,0,1585 +chr17 40912426 . A G 58.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.051;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.4242;MLEAC=2;MLEAF=0.250;MQ=36.87;MQ0=0;MQRankSum=-3.129;QD=0.64;ReadPosRankSum=1.070;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:43,4:47:68:68,0,666 0/0:41,0:41:60:0,60,746 0/0:55,2:57:31:0,31,1172 0/1:39,5:44:32:32,0,757 +chr17 40997130 . C G 76.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.211;DP=69;Dels=0.01;FS=32.571;HaplotypeScore=1.4743;MLEAC=4;MLEAF=0.500;MQ=35.98;MQ0=0;MQRankSum=-2.447;QD=1.11;ReadPosRankSum=-0.012;SB=-2.324e+00 GT:AD:DP:GQ:PL 0/1:16,1:17:12:12,0,249 0/1:18,2:20:20:20,0,392 0/1:13,2:15:22:22,0,302 0/1:13,3:16:65:65,0,229 +chr17 41020880 . C G 116.92 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.403;DP=48;Dels=0.00;FS=5.374;HaplotypeScore=4.9956;MLEAC=5;MLEAF=0.625;MQ=27.03;MQ0=0;MQRankSum=2.648;QD=2.44;ReadPosRankSum=1.814;SB=-3.396e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:18:18,0,103 0/1:11,2:13:46:46,0,116 0/1:11,3:14:10:68,0,10 1/1:11,1:12:3:27,3,0 +chr17 41133242 rs550285 G A 141.14 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.736;DB;DP=7;Dels=0.00;FS=7.782;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=27.48;MQ0=0;MQRankSum=0.736;QD=20.16;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:39,3,0 ./. 1/1:1,2:3:6:64,6,0 1/1:0,2:3:6:74,6,0 +chr17 41245237 rs16940 A G 3773.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.463;DB;DP=341;Dels=0.00;FS=0.000;HaplotypeScore=1.4909;MLEAC=4;MLEAF=0.500;MQ=38.10;MQ0=0;MQRankSum=-9.442;QD=11.06;ReadPosRankSum=1.996;SB=-1.191e+03 GT:AD:DP:GQ:PL 0/1:66,40:106:99:1134,0,2314 0/1:65,35:100:99:1061,0,2221 0/1:71,41:112:99:1203,0,2253 0/1:11,12:23:99:375,0,352 +chr17 41245471 rs4986850 C T 1028.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.127;DB;DP=139;Dels=0.01;FS=3.727;HaplotypeScore=5.1399;MLEAC=3;MLEAF=0.375;MQ=37.54;MQ0=0;MQRankSum=-5.289;QD=11.06;ReadPosRankSum=0.104;SB=-4.450e+02 GT:AD:DP:GQ:PL 0/1:20,12:32:99:345,0,647 0/0:46,0:46:99:0,135,1763 0/1:26,19:45:99:576,0,762 0/1:9,5:14:99:151,0,313 +chr17 41345162 . T C 349.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.427;DP=285;Dels=0.00;FS=44.315;HaplotypeScore=3.5736;MLEAC=3;MLEAF=0.375;MQ=36.27;MQ0=0;MQRankSum=3.784;QD=1.70;ReadPosRankSum=-0.146;SB=-1.078e-02 GT:AD:DP:GQ:PL 0/1:70,11:81:99:244,0,1674 0/1:64,7:71:76:76,0,1518 0/0:76,3:79:82:0,82,1815 0/1:49,5:54:73:73,0,1092 +chr17 41354634 . T C 90.39 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.200;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=3;MLEAF=0.500;MQ=29.10;MQ0=0;MQRankSum=0.933;QD=4.30;ReadPosRankSum=0.533;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:29:29,0,60 0/1:6,3:9:19:83,0,19 0/1:6,1:7:17:17,0,22 ./. +chr17 41465877 rs77516390 A C 207.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.957;DB;DP=98;Dels=0.00;FS=15.933;HaplotypeScore=7.0737;MLEAC=4;MLEAF=0.500;MQ=30.30;MQ0=0;MQRankSum=-2.944;QD=2.12;ReadPosRankSum=1.161;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:22,3:26:44:44,0,456 0/1:23,5:28:58:58,0,324 0/1:23,3:26:44:44,0,497 0/1:12,5:18:99:104,0,142 +chr17 41584825 . A C 96.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.249;DP=50;Dels=0.00;FS=2.606;HaplotypeScore=2.9300;MLEAC=3;MLEAF=0.375;MQ=29.53;MQ0=0;MQRankSum=-1.561;QD=2.49;ReadPosRankSum=-0.351;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:79:79,0,150 0/1:15,1:16:2:2,0,164 0/1:9,3:12:56:56,0,182 0/0:10,1:11:12:0,12,125 +chr17 41796999 . A G 36.70 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.658;DP=92;Dels=0.01;FS=24.335;HaplotypeScore=0.6815;MLEAC=2;MLEAF=0.250;MQ=19.08;MQ0=0;MQRankSum=0.996;QD=0.97;ReadPosRankSum=-0.100;SB=0.570 GT:AD:DP:GQ:PL 0/0:25,0:25:21:0,21,223 0/1:22,2:24:23:23,0,261 0/0:27,1:28:18:0,18,202 0/1:10,3:14:55:55,0,101 +chr17 41836114 . C A 88.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.700;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9354;MLEAC=2;MLEAF=0.250;MQ=32.21;MQ0=0;MQRankSum=-2.255;QD=1.70;ReadPosRankSum=0.949;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/0:26,1:28:23:0,23,542 0/1:25,4:29:70:70,0,376 0/0:22,0:22:54:0,54,639 0/1:19,4:23:60:60,0,434 +chr17 41895137 . G A 45.71 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.704;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=0.9515;MLEAC=3;MLEAF=0.375;MQ=21.13;MQ0=0;MQRankSum=2.113;QD=3.26;ReadPosRankSum=0.556;SB=0.783 GT:AD:DP:GQ:PL 0/0:7,1:8:6:0,6,57 0/1:5,1:6:20:20,0,38 0/0:13,0:13:6:0,6,56 1/1:5,2:7:6:69,6,0 +chr17 41930165 . G T 33.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.006;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=1.5179;MLEAC=3;MLEAF=0.375;MQ=22.82;MQ0=0;MQRankSum=0.778;QD=1.18;ReadPosRankSum=0.549;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:12:18:0,18,214 0/1:7,1:8:19:19,0,39 0/1:11,3:14:38:38,0,160 0/1:4,1:5:19:19,0,20 +chr17 41996814 . A T 54.14 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.277;DP=176;Dels=0.02;FS=20.755;HaplotypeScore=4.2716;MLEAC=3;MLEAF=0.375;MQ=10.90;MQ0=0;MQRankSum=0.214;QD=0.37;ReadPosRankSum=2.778;SB=1.71 GT:AD:DP:GQ:PL 0/1:46,4:50:24:25,0,24 0/1:32,4:36:42:42,0,117 0/1:53,3:56:30:30,0,197 0/0:30,1:31:12:0,12,122 +chr17 42085150 rs228773 T C 252.26 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.751;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=27.48;MQ0=0;MQRankSum=-0.751;QD=19.40;ReadPosRankSum=0.751;SB=-1.278e+02 GT:AD:DP:GQ:PL 1/1:0,4:4:12:151,12,0 1/1:3,2:5:6:58,6,0 ./. 1/1:2,2:4:6:80,6,0 +chr17 42085650 . C G 74.46 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.717;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=5.5004;MLEAC=1;MLEAF=0.125;MQ=27.28;MQ0=0;MQRankSum=-0.670;QD=2.98;ReadPosRankSum=0.696;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,5:24:99:110,0,263 0/0:12,1:13:6:0,6,287 0/0:12,0:12:27:0,27,291 0/0:11,1:12:9:0,9,326 +chr17 42090437 . A C 31.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.684;DP=80;Dels=0.00;FS=2.450;HaplotypeScore=3.5065;MLEAC=1;MLEAF=0.125;MQ=29.38;MQ0=0;MQRankSum=-0.922;QD=1.68;ReadPosRankSum=-0.774;SB=-2.065e-03 GT:AD:DP:GQ:PL 0/0:17,0:17:36:0,36,408 0/0:23,0:23:54:0,54,608 0/0:21,0:21:51:0,51,598 0/1:15,4:19:68:68,0,271 +chr17 42290601 . T C 264.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.333;DP=103;Dels=0.00;FS=58.884;HaplotypeScore=8.2339;MLEAC=4;MLEAF=0.500;MQ=31.45;MQ0=0;MQRankSum=-3.050;QD=2.57;ReadPosRankSum=1.961;SB=-2.047e+00 GT:AD:DP:GQ:PL 0/1:23,3:26:50:50,0,303 0/1:24,4:28:63:63,0,426 0/1:22,5:27:99:109,0,480 0/1:18,4:22:85:85,0,401 +chr17 42337976 rs2074107 G A 1335.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.011;DB;DP=103;Dels=0.00;FS=15.240;HaplotypeScore=1.5871;MLEAC=4;MLEAF=0.500;MQ=29.69;MQ0=0;MQRankSum=0.083;QD=16.09;ReadPosRankSum=0.422;SB=-3.120e+02 GT:AD:DP:GQ:PL 0/0:20,0:20:45:0,45,529 1/1:3,16:19:45:494,45,0 0/1:15,16:31:99:450,0,335 0/1:15,18:33:99:440,0,297 +chr17 42460877 . G C 94.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.955;DP=53;Dels=0.00;FS=10.937;HaplotypeScore=2.4475;MLEAC=3;MLEAF=0.375;MQ=25.91;MQ0=0;MQRankSum=1.174;QD=2.19;ReadPosRankSum=-2.803;SB=0.279 GT:AD:DP:GQ:PL 0/1:10,3:13:52:52,0,108 0/0:10,0:10:12:0,12,124 0/1:11,2:13:53:53,0,116 0/1:15,2:17:32:32,0,165 +chr17 42476923 . T C 140.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.016;DP=210;Dels=0.01;FS=42.249;HaplotypeScore=7.1539;MLEAC=3;MLEAF=0.375;MQ=29.18;MQ0=0;MQRankSum=-3.580;QD=0.81;ReadPosRankSum=2.944;SB=0.148 GT:AD:DP:GQ:PL 0/1:52,7:59:39:39,0,1337 0/1:33,8:41:88:88,0,741 0/1:62,10:72:57:57,0,1337 0/0:29,6:36:36:0,36,632 +chr17 42477064 . G T 45.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.661;DP=72;Dels=0.03;FS=39.200;HaplotypeScore=15.8693;MLEAC=2;MLEAF=0.250;MQ=25.68;MQ0=0;MQRankSum=1.101;QD=1.24;ReadPosRankSum=-1.193;SB=-4.874e-01 GT:AD:DP:GQ:PL 0/1:12,3:15:50:50,0,199 0/0:21,1:23:7:0,7,237 0/1:20,2:22:36:36,0,176 0/0:9,1:10:6:0,6,69 +chr17 42477211 . C G 46.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.732;DP=175;Dels=0.00;FS=56.304;HaplotypeScore=2.9089;MLEAC=2;MLEAF=0.250;MQ=33.68;MQ0=0;MQRankSum=-2.852;QD=0.59;ReadPosRankSum=-0.347;SB=-2.757e+00 GT:AD:DP:GQ:PL 0/1:42,4:46:10:10,0,1145 0/0:51,2:53:61:0,61,1355 0/0:41,1:42:60:0,60,1086 0/1:29,5:34:77:77,0,752 +chr17 42483208 . A T 163.57 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.838;DP=64;Dels=0.02;FS=6.327;HaplotypeScore=5.8794;MLEAC=6;MLEAF=0.750;MQ=18.25;MQ0=0;MQRankSum=2.910;QD=2.56;ReadPosRankSum=0.958;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,5:13:12:104,12,0 1/1:20,2:22:3:29,3,0 0/1:13,6:19:14:58,0,14 0/1:7,2:9:16:16,0,17 +chr17 42636007 . G C 446.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.040;DP=95;Dels=0.00;FS=106.937;HaplotypeScore=7.9026;MLEAC=4;MLEAF=0.500;MQ=30.72;MQ0=0;MQRankSum=-0.178;QD=4.70;ReadPosRankSum=0.889;SB=-3.378e+00 GT:AD:DP:GQ:PL 0/1:14,6:20:99:160,0,218 0/1:26,5:31:82:82,0,431 0/1:14,6:20:99:174,0,248 0/1:19,5:24:73:73,0,376 +chr17 42797378 . C G 41.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.333;DP=19;Dels=0.00;FS=15.091;HaplotypeScore=1.4659;MLEAC=3;MLEAF=0.375;MQ=24.43;MQ0=0;MQRankSum=0.133;QD=2.56;ReadPosRankSum=0.533;SB=-7.495e-01 GT:AD:DP:GQ:PL 0/1:4,2:6:23:23,0,65 0/1:5,1:6:17:17,0,34 0/0:3,0:3:3:0,3,39 0/1:2,2:4:15:42,0,15 +chr17 42855124 . T C 238.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.521;DP=41;Dels=0.02;FS=17.910;HaplotypeScore=1.9277;MLEAC=4;MLEAF=0.500;MQ=32.20;MQ0=0;MQRankSum=-1.043;QD=5.82;ReadPosRankSum=3.129;SB=0.074 GT:AD:DP:GQ:PL 0/1:7,5:12:80:146,0,80 0/1:7,2:9:17:60,0,17 0/1:7,1:8:30:30,0,64 0/1:8,3:11:45:45,0,127 +chr17 42981982 . A C 89.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.987;DP=84;Dels=0.00;FS=25.704;HaplotypeScore=8.8059;MLEAC=4;MLEAF=0.500;MQ=11.98;MQ0=0;MQRankSum=3.483;QD=2.35;ReadPosRankSum=-0.589;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:23,4:27:12:109,12,0 0/0:20,0:20:3:0,3,34 0/0:26,0:26:3:0,3,23 0/1:10,1:11:19:24,0,19 +chr17 43013468 . T G 795.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.171;DP=104;Dels=0.00;FS=65.839;HaplotypeScore=1.5917;MLEAC=4;MLEAF=0.500;MQ=34.37;MQ0=0;MQRankSum=-1.142;QD=7.65;ReadPosRankSum=1.657;SB=0.319 GT:AD:DP:GQ:PL 0/1:14,4:18:99:100,0,263 0/1:15,8:23:99:231,0,265 0/1:25,11:36:99:307,0,405 0/1:19,8:27:99:200,0,350 +chr17 43181325 rs2269745 A G 410.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.731;DB;DP=83;Dels=0.04;FS=0.000;HaplotypeScore=9.3524;MLEAC=4;MLEAF=0.500;MQ=24.51;MQ0=0;MQRankSum=0.437;QD=4.95;ReadPosRankSum=0.869;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,6:23:99:153,0,274 0/1:13,5:19:57:57,0,216 0/1:14,7:21:99:160,0,192 0/1:11,6:17:83:83,0,154 +chr17 43307998 . G A 171.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.506;DP=163;Dels=0.00;FS=96.765;HaplotypeScore=2.5143;MLEAC=3;MLEAF=0.375;MQ=35.19;MQ0=0;MQRankSum=-1.905;QD=1.42;ReadPosRankSum=-0.183;SB=0.799 GT:AD:DP:GQ:PL 0/0:40,2:42:47:0,47,1012 0/1:38,7:45:99:128,0,1003 0/1:34,3:37:41:41,0,635 0/1:35,4:39:46:46,0,874 +chr17 43311013 . A G 156.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.623;DP=69;Dels=0.03;FS=51.910;HaplotypeScore=9.5314;MLEAC=4;MLEAF=0.500;MQ=28.47;MQ0=0;MQRankSum=-2.351;QD=2.27;ReadPosRankSum=1.826;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:9,4:13:20:20,0,201 0/1:11,4:15:18:64,0,18 0/1:16,3:19:55:55,0,280 0/1:15,5:20:60:60,0,120 +chr17 43332726 . G T 50.66 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.424;DP=125;Dels=0.01;FS=3.463;HaplotypeScore=8.7564;MLEAC=3;MLEAF=0.375;MQ=29.39;MQ0=0;MQRankSum=-2.823;QD=0.51;ReadPosRankSum=0.816;SB=-1.384e+00 GT:AD:DP:GQ:PL 0/1:28,2:30:5:5,0,582 0/1:27,5:32:70:70,0,329 0/1:33,4:37:17:17,0,530 0/0:24,1:25:42:0,42,502 +chr17 43351986 . A G 188.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.485;DP=94;Dels=0.04;FS=15.065;HaplotypeScore=4.1045;MLEAC=4;MLEAF=0.500;MQ=26.01;MQ0=0;MQRankSum=-2.172;QD=2.01;ReadPosRankSum=-4.351;SB=-2.338e-02 GT:AD:DP:GQ:PL 0/1:17,5:22:76:76,0,401 0/1:19,4:23:36:36,0,350 0/1:20,5:25:95:95,0,368 0/1:16,4:20:24:24,0,233 +chr17 43364293 rs56405343 C CG 913.26 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.659;DB;DP=59;FS=8.078;HaplotypeScore=27.1173;MLEAC=4;MLEAF=0.500;MQ=33.66;MQ0=0;MQRankSum=-1.100;QD=15.48;RPA=1,2;RU=G;ReadPosRankSum=0.766;SB=-2.553e+02;STR GT:AD:DP:GQ:PL 0/1:10,2:8:22:22,0,125 0/1:8,10:19:9:484,0,9 0/1:7,7:14:14:336,0,14 0/1:6,2:8:8:122,0,8 +chr17 43552985 . A T 33.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=-1.102;DP=71;Dels=0.00;FS=2.698;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=10.35;MQ0=0;MQRankSum=2.310;QD=0.83;ReadPosRankSum=-2.025;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:20,1:21:3:34,3,0 1/1:18,1:19:3:32,3,0 ./. ./. +chr17 43657437 rs115232461 A G 49.41 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.422;DB;DP=12;Dels=0.00;FS=3.233;HaplotypeScore=0.4933;MLEAC=2;MLEAF=0.500;MQ=20.35;MQ0=0;MQRankSum=1.422;QD=4.49;ReadPosRankSum=1.203;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:3,1:4:16:16,0,27 ./. 0/1:4,2:7:28:68,0,28 +chr17 43678854 . T C 56.41 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.850;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=1.5167;MLEAC=6;MLEAF=0.750;MQ=20.65;MQ0=0;MQRankSum=2.350;QD=2.17;ReadPosRankSum=2.450;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:28,3,0 0/1:7,1:8:17:27,0,17 0/1:7,1:8:16:16,0,51 1/1:5,1:6:3:27,3,0 +chr17 43893888 . G T 30.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.813;DP=41;Dels=0.00;FS=3.598;HaplotypeScore=5.1067;MLEAC=4;MLEAF=0.500;MQ=24.06;MQ0=0;MQRankSum=-1.201;QD=1.09;ReadPosRankSum=0.039;SB=-2.163e+01 GT:AD:DP:GQ:PL 0/1:8,1:10:9:9,0,128 1/1:3,2:5:6:57,6,0 0/1:12,1:13:9:9,0,104 0/0:13,0:13:15:0,15,163 +chr17 43910455 rs138745429 G A 3166.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=-1.317;DB;DP=129;Dels=0.01;FS=6.819;HaplotypeScore=1.9748;MLEAC=7;MLEAF=0.875;MQ=33.13;MQ0=0;MQRankSum=-1.913;QD=24.55;ReadPosRankSum=0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,27:28:60:936,60,0 0/1:22,10:32:99:277,0,728 1/1:3,30:33:84:1003,84,0 1/1:3,32:35:65:995,65,0 +chr17 44049133 rs117878895 T C 286.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.731;DB;DP=78;Dels=0.01;FS=2.263;HaplotypeScore=1.7112;MLEAC=1;MLEAF=0.125;MQ=30.00;MQ0=0;MQRankSum=0.930;QD=15.10;ReadPosRankSum=-0.281;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:33:0,33,392 0/1:8,11:19:99:323,0,112 0/0:25,0:25:63:0,63,690 0/0:19,0:19:48:0,48,579 +chr17 44101563 rs118104841 T C 142.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.804;DB;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8225;MLEAC=1;MLEAF=0.125;MQ=26.66;MQ0=0;MQRankSum=-1.687;QD=5.50;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:57:0,57,638 0/1:16,10:26:99:179,0,271 0/0:27,0:27:51:0,51,563 0/0:27,0:27:54:0,54,555 +chr17 44344858 rs117537911 A G 54.27 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.566;DB;DP=127;Dels=0.00;FS=4.608;HaplotypeScore=0.7434;MLEAC=1;MLEAF=0.125;MQ=14.12;MQ0=0;MQRankSum=-1.200;QD=1.15;ReadPosRankSum=0.271;SB=1.03 GT:AD:DP:GQ:PL 0/0:32,0:32:9:0,9,112 0/1:25,22:47:90:90,0,174 0/0:28,0:28:15:0,15,172 0/0:20,0:20:12:0,12,121 +chr17 44344988 rs117275691 C G 246.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.609;DB;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=0.2497;MLEAC=1;MLEAF=0.125;MQ=26.46;MQ0=0;MQRankSum=0.230;QD=14.47;ReadPosRankSum=1.288;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:21:0,21,247 0/1:5,12:17:99:282,0,116 0/0:17,0:17:24:0,24,267 0/0:11,0:11:21:0,21,275 +chr17 44949792 . A T 297.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.681;DP=92;Dels=0.03;FS=5.424;HaplotypeScore=10.6232;MLEAC=4;MLEAF=0.500;MQ=22.21;MQ0=0;MQRankSum=0.761;QD=3.24;ReadPosRankSum=1.606;SB=-1.128e-02 GT:AD:DP:GQ:PL 0/1:21,5:27:86:86,0,166 0/1:14,2:16:17:17,0,80 0/1:25,5:30:99:102,0,185 0/1:10,6:16:68:135,0,68 +chr17 45214673 rs62075621 T C 1995.70 . AC=6;AF=0.750;AN=8;BaseQRankSum=8.029;DB;DP=220;Dels=0.00;FS=13.753;HaplotypeScore=1.2453;MLEAC=6;MLEAF=0.750;MQ=17.63;MQ0=0;MQRankSum=1.766;QD=9.07;ReadPosRankSum=2.295;SB=-9.032e+02 GT:AD:DP:GQ:PL 0/1:35,29:64:17:495,0,17 1/1:21,28:49:48:535,48,0 0/1:36,30:66:13:571,0,13 1/1:13,28:41:10:440,10,0 +chr17 45214682 rs62075622 A G 1938.69 . AC=5;AF=0.625;AN=8;BaseQRankSum=5.093;DB;DP=261;Dels=0.00;FS=44.261;HaplotypeScore=1.4116;MLEAC=5;MLEAF=0.625;MQ=16.83;MQ0=0;MQRankSum=-4.004;QD=7.43;ReadPosRankSum=6.251;SB=-8.746e+02 GT:AD:DP:GQ:PL 0/1:23,46:72:97:423,0,97 1/1:17,45:62:29:574,29,0 0/1:21,52:74:66:565,0,66 0/1:5,47:53:15:422,0,15 +chr17 45216172 rs76836152 A G 224.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.945;DB;DP=188;Dels=0.00;FS=29.574;HaplotypeScore=6.6557;MLEAC=4;MLEAF=0.500;MQ=11.63;MQ0=0;MQRankSum=-5.256;QD=1.19;ReadPosRankSum=1.593;SB=-9.265e+01 GT:AD:DP:GQ:PL 0/1:19,24:43:44:44,0,72 0/1:22,27:49:54:54,0,185 0/1:26,26:52:51:51,0,77 0/1:13,31:44:76:118,0,76 +chr17 45219296 rs79487913 G C 311.71 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.064;DB;DP=185;Dels=0.00;FS=18.449;HaplotypeScore=0.9887;MLEAC=4;MLEAF=0.500;MQ=13.89;MQ0=0;MQRankSum=5.432;QD=2.51;ReadPosRankSum=-2.788;SB=-1.843e+01 GT:AD:DP:GQ:PL 0/1:42,5:47:57:147,0,57 0/0:60,1:61:1:0,1,342 0/1:54,1:55:28:28,0,88 0/1:17,5:22:51:177,0,51 +chr17 45219723 rs77609498 C G 199.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.652;DB;DP=48;Dels=0.00;FS=7.833;HaplotypeScore=1.7072;MLEAC=4;MLEAF=0.500;MQ=23.06;MQ0=0;MQRankSum=-0.493;QD=4.16;ReadPosRankSum=-2.307;SB=-9.831e+01 GT:AD:DP:GQ:PL 0/1:8,2:10:37:37,0,41 0/1:11,4:15:78:78,0,148 0/1:13,3:16:58:58,0,261 0/1:3,4:7:11:69,0,11 +chr17 45235653 rs74398156 C T 518.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.744;DB;DP=176;Dels=0.00;FS=116.697;HaplotypeScore=3.1481;MLEAC=4;MLEAF=0.500;MQ=21.10;MQ0=0;MQRankSum=-3.033;QD=2.95;ReadPosRankSum=0.815;SB=-1.695e+02 GT:AD:DP:GQ:PL 0/1:31,18:49:99:151,0,386 0/1:32,12:44:99:114,0,542 0/1:33,18:51:99:134,0,512 0/1:15,17:32:99:162,0,280 +chr17 45247305 . A G 304.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.650;DP=281;Dels=0.00;FS=106.247;HaplotypeScore=3.3045;MLEAC=2;MLEAF=0.250;MQ=25.40;MQ0=0;MQRankSum=-6.244;QD=2.63;ReadPosRankSum=-0.651;SB=-7.540e+01 GT:AD:DP:GQ:PL 0/0:66,16:82:23:0,23,1598 0/1:60,15:75:92:92,0,1261 0/0:72,11:83:75:0,75,1675 0/1:21,20:41:99:254,0,359 +chr17 45266522 rs62077279 T C 2014.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.611;DB;DP=168;Dels=0.00;FS=0.659;HaplotypeScore=5.0314;MLEAC=4;MLEAF=0.500;MQ=26.38;MQ0=0;MQRankSum=-2.876;QD=11.99;ReadPosRankSum=-1.191;SB=-8.380e+02 GT:AD:DP:GQ:PL 0/1:14,27:42:99:484,0,239 0/1:20,24:45:99:520,0,420 0/1:11,30:41:99:531,0,131 0/1:17,23:40:99:522,0,210 +chr17 45363546 rs35265764 G T 1224.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.191;DB;DP=118;Dels=0.04;FS=0.000;HaplotypeScore=1.2081;MLEAC=3;MLEAF=0.375;MQ=37.34;MQ0=0;MQRankSum=-3.536;QD=14.08;ReadPosRankSum=-0.263;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,12:24:99:410,0,314 0/0:31,0:31:90:0,90,1219 0/1:18,10:28:99:303,0,488 0/1:13,17:30:99:555,0,359 +chr17 45490251 rs3883318 C T 1149.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.204;DB;DP=111;Dels=0.00;FS=1.646;HaplotypeScore=1.8968;MLEAC=3;MLEAF=0.375;MQ=33.52;MQ0=0;MQRankSum=-1.779;QD=15.13;ReadPosRankSum=1.525;SB=-4.820e+02 GT:AD:DP:GQ:PL 0/1:17,11:28:99:309,0,406 0/0:35,0:35:87:0,87,1018 0/1:14,25:39:99:794,0,388 0/1:4,4:9:90:90,0,90 +chr17 45734263 . G A 855.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.006;DP=145;Dels=0.00;FS=135.669;HaplotypeScore=1.4599;MLEAC=4;MLEAF=0.500;MQ=34.04;MQ0=0;MQRankSum=-4.487;QD=5.90;ReadPosRankSum=1.801;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,10:35:99:247,0,573 0/1:29,11:40:99:228,0,694 0/1:29,11:40:99:201,0,608 0/1:21,9:30:99:222,0,238 +chr17 45820054 . C G 69.69 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.762;DP=46;Dels=0.04;FS=0.000;HaplotypeScore=1.7398;MLEAC=3;MLEAF=0.375;MQ=28.82;MQ0=0;MQRankSum=-0.515;QD=1.88;ReadPosRankSum=-0.350;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:10,1:11:14:14,0,164 0/1:7,1:8:4:4,0,188 0/0:8,0:8:9:0,9,116 0/1:13,4:17:92:92,0,148 +chr17 45917790 . T A 115.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.066;DP=59;Dels=0.00;FS=2.424;HaplotypeScore=5.9997;MLEAC=4;MLEAF=0.500;MQ=27.18;MQ0=0;MQRankSum=0.400;QD=1.96;ReadPosRankSum=-0.400;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:19:19,0,125 0/1:11,4:15:83:83,0,94 0/1:18,1:19:19:19,0,44 0/1:8,2:10:37:37,0,40 +chr17 45925138 . G C 77.31 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.475;DP=28;Dels=0.00;FS=2.831;HaplotypeScore=2.9428;MLEAC=6;MLEAF=0.750;MQ=19.11;MQ0=0;MQRankSum=1.109;QD=2.76;ReadPosRankSum=-0.317;SB=0.020 GT:AD:DP:GQ:PL 1/1:3,2:5:6:60,6,0 0/1:8,1:9:16:16,0,43 1/1:5,1:6:3:27,3,0 0/1:5,3:8:17:17,0,57 +chr17 46030260 . CA C 64.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.932;DP=35;FS=0.000;HaplotypeScore=18.2880;MLEAC=4;MLEAF=0.500;MQ=19.01;MQ0=0;MQRankSum=-0.289;QD=2.23;RPA=2,1;RU=A;ReadPosRankSum=-0.289;SB=3.20;STR GT:AD:DP:GQ:PL 0/0:5,1:3:3:0,3,24 0/1:7,2:7:29:29,0,69 1/1:4,3:4:6:63,6,0 0/1:9,2:6:25:25,0,91 +chr17 46133667 . C A 31.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.609;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=3.4260;MLEAC=1;MLEAF=0.125;MQ=32.88;MQ0=0;MQRankSum=-6.017;QD=0.63;ReadPosRankSum=0.967;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:44,7:51:68:68,0,1164 0/0:67,9:76:88:0,88,2147 0/0:72,5:77:51:0,51,1781 0/0:62,5:67:46:0,46,1647 +chr17 46190706 . G A 41.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.302;DP=151;Dels=0.04;FS=3.877;HaplotypeScore=87.2910;MLEAC=2;MLEAF=0.250;MQ=19.46;MQ0=0;MQRankSum=-1.109;QD=0.59;ReadPosRankSum=0.291;SB=-2.634e+01 GT:AD:DP:GQ:PL 0/1:30,7:39:53:53,0,288 0/1:21,5:28:30:30,0,111 0/0:34,2:38:18:0,18,199 0/0:37,2:40:24:0,24,240 +chr17 46691728 . G C 117.39 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.247;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.8172;MLEAC=4;MLEAF=0.500;MQ=25.33;MQ0=0;MQRankSum=-1.398;QD=6.18;ReadPosRankSum=1.625;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:19:19,0,65 0/1:4,3:7:20:20,0,57 0/0:5,0:5:9:0,9,119 1/1:2,5:7:12:125,12,0 +chr17 46805600 . T C 40.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.055;DP=168;Dels=0.01;FS=2.797;HaplotypeScore=11.4768;MLEAC=2;MLEAF=0.250;MQ=30.07;MQ0=0;MQRankSum=-2.009;QD=0.49;ReadPosRankSum=-0.863;SB=-2.280e+01 GT:AD:DP:GQ:PL 0/1:38,4:42:33:33,0,818 0/0:42,2:44:52:0,52,841 0/0:40,2:42:81:0,81,961 0/1:34,5:39:49:49,0,505 +chr17 46970835 . C T 271.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.060;DP=56;Dels=0.02;FS=7.898;HaplotypeScore=6.3198;MLEAC=3;MLEAF=0.375;MQ=32.18;MQ0=0;MQRankSum=-0.121;QD=5.91;ReadPosRankSum=-0.697;SB=0.068 GT:AD:DP:GQ:PL 0/0:10,0:10:18:0,18,235 0/1:13,4:17:99:111,0,142 0/1:13,3:16:84:84,0,225 0/1:8,4:12:99:120,0,135 +chr17 46970836 rs684682 A G 545.09 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.417;DB;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=5.5756;MLEAC=5;MLEAF=0.625;MQ=32.10;MQ0=0;MQRankSum=1.103;QD=9.91;ReadPosRankSum=1.790;SB=-1.166e+02 GT:AD:DP:GQ:PL 1/1:5,4:9:12:157,12,0 0/1:11,5:16:83:145,0,83 0/1:10,6:17:70:190,0,70 0/1:9,3:12:98:98,0,121 +chr17 47014586 . C G 119.63 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.370;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9722;MLEAC=1;MLEAF=0.125;MQ=34.09;MQ0=0;MQRankSum=-1.041;QD=8.55;ReadPosRankSum=3.295;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,5:14:99:155,0,144 0/0:8,1:9:9:0,9,107 0/0:5,0:5:9:0,9,91 0/0:3,1:4:6:0,6,47 +chr17 47237998 . G A 718.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.637;DP=289;Dels=0.00;FS=24.661;HaplotypeScore=1.2122;MLEAC=4;MLEAF=0.500;MQ=34.23;MQ0=0;MQRankSum=-6.486;QD=2.49;ReadPosRankSum=0.770;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:61,11:72:99:182,0,1582 0/1:64,13:77:99:162,0,1529 0/1:67,15:82:99:265,0,1635 0/1:48,10:58:99:152,0,932 +chr17 47246979 rs16946912 A G 631.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.813;DB;DP=172;Dels=0.03;FS=2.627;HaplotypeScore=27.8875;MLEAC=4;MLEAF=0.500;MQ=30.33;MQ0=0;MQRankSum=-1.487;QD=3.67;ReadPosRankSum=1.869;SB=-2.349e+02 GT:AD:DP:GQ:PL 0/1:34,6:42:99:107,0,788 0/1:35,6:44:90:90,0,650 0/1:28,14:44:99:325,0,450 0/1:30,7:37:99:152,0,473 +chr17 47284735 rs35638197 T C 950.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.858;DB;DP=239;Dels=0.00;FS=31.494;HaplotypeScore=1.6517;MLEAC=3;MLEAF=0.375;MQ=33.15;MQ0=0;MQRankSum=-4.765;QD=5.34;ReadPosRankSum=1.709;SB=-3.000e+02 GT:AD:DP:GQ:PL 0/1:44,15:59:99:285,0,1351 0/0:61,0:61:99:0,177,2237 0/1:44,14:58:99:284,0,1310 0/1:43,18:61:99:425,0,1264 +chr17 47297636 . C T 31.39 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.313;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=3.5861;MLEAC=1;MLEAF=0.125;MQ=25.96;MQ0=0;MQRankSum=0.138;QD=2.62;ReadPosRankSum=-2.143;SB=0.021 GT:AD:DP:GQ:PL 0/0:9,0:9:21:0,21,253 0/1:9,3:12:67:67,0,111 0/0:5,0:5:12:0,12,160 0/0:9,0:9:6:0,6,54 +chr17 47329940 . C G 62.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.112;DP=187;Dels=0.00;FS=42.648;HaplotypeScore=6.0408;MLEAC=3;MLEAF=0.375;MQ=36.45;MQ0=0;MQRankSum=-3.328;QD=0.43;ReadPosRankSum=-0.093;SB=0.757 GT:AD:DP:GQ:PL 0/1:47,4:51:25:25,0,1279 0/0:40,2:42:35:0,35,1147 0/1:44,6:50:51:51,0,1138 0/1:38,6:44:30:30,0,1039 +chr17 47784314 . T A 67.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.143;DP=215;Dels=0.01;FS=0.000;HaplotypeScore=9.3052;MLEAC=2;MLEAF=0.250;MQ=33.47;MQ0=0;MQRankSum=-4.964;QD=0.60;ReadPosRankSum=-2.277;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:41,2:44:47:0,47,1149 0/0:53,4:59:21:0,21,1334 0/1:67,8:75:94:94,0,1523 0/1:29,5:35:14:14,0,623 +chr17 47900508 . G C 163.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.810;DP=41;Dels=0.02;FS=9.394;HaplotypeScore=4.0756;MLEAC=3;MLEAF=0.500;MQ=28.98;MQ0=0;MQRankSum=2.045;QD=4.19;ReadPosRankSum=-0.270;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,1:13:34:34,0,35 0/1:8,4:12:62:102,0,62 0/1:10,3:13:66:66,0,88 ./. +chr17 48050538 . C A 107.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.097;DP=96;Dels=0.02;FS=11.236;HaplotypeScore=9.3624;MLEAC=3;MLEAF=0.375;MQ=26.81;MQ0=0;MQRankSum=0.097;QD=1.56;ReadPosRankSum=0.836;SB=-2.867e+00 GT:AD:DP:GQ:PL 0/1:11,1:12:5:5,0,172 0/0:26,0:26:27:0,27,267 0/1:23,6:29:99:114,0,336 0/1:24,3:27:30:30,0,388 +chr17 48151378 . G A 59.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.034;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.2498;MLEAC=3;MLEAF=0.375;MQ=34.87;MQ0=0;MQRankSum=-3.025;QD=0.67;ReadPosRankSum=-3.357;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,3:28:16:16,0,755 0/1:26,4:30:66:66,0,553 0/0:37,1:38:61:0,61,1170 0/1:26,4:30:20:20,0,760 +chr17 48158810 . C G 50.09 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.802;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=2.8622;MLEAC=3;MLEAF=0.375;MQ=32.89;MQ0=0;MQRankSum=-0.862;QD=2.09;ReadPosRankSum=1.175;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:5:5,0,228 0/1:5,1:6:20:20,0,36 0/0:5,0:5:9:0,9,111 0/1:6,3:9:32:66,0,32 +chr17 48184288 rs847694 G A 1737.72 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.657;DB;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6974;MLEAC=6;MLEAF=0.750;MQ=26.25;MQ0=0;MQRankSum=1.638;QD=16.24;ReadPosRankSum=2.635;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,17:22:8:425,0,8 0/1:20,12:32:99:283,0,320 1/1:3,20:23:27:566,27,0 1/1:7,23:30:32:509,32,0 +chr17 48185569 . C G 38.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.635;DP=36;Dels=0.00;FS=9.947;HaplotypeScore=1.2094;MLEAC=1;MLEAF=0.125;MQ=28.79;MQ0=0;MQRankSum=0.702;QD=3.18;ReadPosRankSum=-1.704;SB=2.39 GT:AD:DP:GQ:PL 0/0:8,0:8:15:0,15,185 0/1:9,3:12:74:74,0,229 0/0:8,0:8:15:0,15,161 0/0:8,0:8:12:0,12,147 +chr17 48191818 rs77267183 A C 252.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.629;DB;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2622;MLEAC=1;MLEAF=0.125;MQ=22.73;MQ0=0;MQRankSum=1.463;QD=10.50;ReadPosRankSum=3.008;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,13:24:66:288,0,66 0/0:12,0:12:15:0,15,127 0/0:9,0:9:18:0,18,163 0/0:17,0:17:18:0,18,175 +chr17 48542572 rs898454 C G 1097.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.522;DB;DP=41;Dels=0.02;FS=8.573;HaplotypeScore=0.9755;MLEAC=8;MLEAF=1.00;MQ=30.60;MQ0=0;MQRankSum=3.522;QD=26.76;ReadPosRankSum=2.699;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,7:10:21:234,21,0 1/1:4,9:13:27:326,27,0 1/1:2,8:10:24:309,24,0 1/1:0,7:7:21:267,21,0 +chr17 48603283 . G A 683.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.801;DP=200;Dels=0.02;FS=90.599;HaplotypeScore=18.2047;MLEAC=4;MLEAF=0.500;MQ=28.48;MQ0=0;MQRankSum=-1.674;QD=3.42;ReadPosRankSum=-1.200;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:46,14:60:99:292,0,755 0/1:34,8:42:99:136,0,483 0/1:46,6:53:62:62,0,657 0/1:30,12:42:99:236,0,445 +chr17 48625928 rs8076632 C G 1550.85 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.296;DB;DP=78;Dels=0.00;FS=1.186;HaplotypeScore=0.7426;MLEAC=6;MLEAF=0.750;MQ=30.57;MQ0=0;MQRankSum=-0.098;QD=19.88;ReadPosRankSum=0.891;SB=-3.962e+02 GT:AD:DP:GQ:PL 0/1:14,13:27:99:354,0,366 1/1:7,14:21:42:491,42,0 0/1:5,16:21:4:501,0,4 1/1:2,7:9:21:249,21,0 +chr17 48692862 . C T 61.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.100;DP=56;Dels=0.00;FS=2.448;HaplotypeScore=7.2608;MLEAC=2;MLEAF=0.250;MQ=22.77;MQ0=0;MQRankSum=0.180;QD=2.13;ReadPosRankSum=-0.620;SB=0.614 GT:AD:DP:GQ:PL 0/0:14,0:14:18:0,18,179 0/1:10,2:12:26:26,0,76 0/0:11,1:13:12:0,12,127 0/1:14,3:17:33:77,0,33 +chr17 48761403 . G A 55.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.964;DP=67;Dels=0.00;FS=10.242;HaplotypeScore=14.7596;MLEAC=3;MLEAF=0.375;MQ=23.87;MQ0=0;MQRankSum=0.683;QD=1.18;ReadPosRankSum=2.121;SB=-1.418e+01 GT:AD:DP:GQ:PL 0/1:17,2:19:40:40,0,93 0/1:13,3:17:46:46,0,151 0/0:20,0:20:18:0,18,198 0/1:10,1:11:12:12,0,93 +chr17 48817650 . T A 302.34 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.564;DP=75;Dels=0.01;FS=3.212;HaplotypeScore=15.6220;MLEAC=5;MLEAF=0.625;MQ=20.28;MQ0=0;MQRankSum=0.141;QD=4.03;ReadPosRankSum=1.551;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:44:46,0,44 0/1:17,9:26:36:125,0,36 0/1:14,8:22:99:118,0,139 1/1:5,3:8:6:57,6,0 +chr17 48817651 . A G 196.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.189;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=15.3435;MLEAC=3;MLEAF=0.375;MQ=19.70;MQ0=0;MQRankSum=1.197;QD=3.79;ReadPosRankSum=0.113;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,8:18:32:127,0,32 0/1:21,4:25:48:67,0,48 0/0:21,0:21:18:0,18,161 0/1:6,2:8:17:46,0,17 +chr17 49231623 rs34431255 C G 686.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.350;DB;DP=70;Dels=0.01;FS=2.811;HaplotypeScore=0.2416;MLEAC=4;MLEAF=0.500;MQ=34.29;MQ0=0;MQRankSum=-2.025;QD=9.81;ReadPosRankSum=1.195;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,5:18:99:139,0,420 0/1:8,8:16:99:238,0,228 0/1:12,9:21:99:274,0,378 0/1:10,4:14:78:78,0,250 +chr17 49340557 . A C 82.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.628;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=3.1941;MLEAC=3;MLEAF=0.375;MQ=28.40;MQ0=0;MQRankSum=0.864;QD=1.11;ReadPosRankSum=0.355;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:35,2:39:9:9,0,357 0/1:18,2:20:45:45,0,161 0/0:22,1:23:9:0,9,349 0/1:11,3:14:70:70,0,117 +chr17 49343477 . A C 43.51 . AC=2;AF=0.333;AN=6;BaseQRankSum=-4.296;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=5.0473;MLEAC=3;MLEAF=0.500;MQ=22.29;MQ0=0;MQRankSum=-1.356;QD=1.67;ReadPosRankSum=-1.012;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,2:13:0:0,0,196 0/1:10,5:15:64:64,0,133 0/1:6,4:11:15:15,0,79 ./. +chr17 49794696 rs1468116 T G 41.01 . AC=4;AF=1.00;AN=4;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=23.91;MQ0=0;QD=10.25;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:40,3,0 1/1:2,1:3:3:34,3,0 ./. ./. +chr17 50259142 rs9889282 A C 48.09 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=9;Dels=0.00;FS=11.761;HaplotypeScore=0.9863;MLEAC=3;MLEAF=1.50;MQ=22.62;MQ0=0;MQRankSum=0.736;QD=9.62;ReadPosRankSum=0.736;SB=23.67 GT:AD:DP:GQ:PL ./. ./. 1/1:2,2:5:6:79,6,0 ./. +chr17 53158361 rs2628302 G A 406.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.833;DB;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3828;MLEAC=4;MLEAF=0.500;MQ=35.22;MQ0=0;MQRankSum=-5.110;QD=3.66;ReadPosRankSum=1.546;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,10:32:99:203,0,706 0/1:21,5:26:54:54,0,584 0/1:23,6:29:99:142,0,637 0/1:20,4:24:50:50,0,523 +chr17 53844847 rs35430620 C T 439.68 . AC=6;AF=1.00;AN=6;DB;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.2800;MLEAC=6;MLEAF=1.00;MQ=24.42;MQ0=0;QD=18.32;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:223,21,0 1/1:2,8:10:21:199,21,0 1/1:3,3:6:6:55,6,0 ./. +chr17 55028045 . C T 97.02 . AC=6;AF=0.750;AN=8;BaseQRankSum=-3.324;DP=211;Dels=0.00;FS=31.661;HaplotypeScore=2.4246;MLEAC=6;MLEAF=0.750;MQ=11.10;MQ0=0;MQRankSum=3.726;QD=0.62;ReadPosRankSum=0.717;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:65,1:66:3:27,3,0 1/1:65,3:68:9:91,9,0 0/0:54,0:54:6:0,6,49 1/1:21,1:22:3:23,3,0 +chr17 55731350 rs9893613 A G 126.67 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.754;DB;DP=11;Dels=0.00;FS=8.451;HaplotypeScore=0.2774;MLEAC=6;MLEAF=1.00;MQ=23.42;MQ0=0;MQRankSum=1.754;QD=11.52;ReadPosRankSum=-0.550;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:3:3:37,3,0 1/1:4,2:6:6:84,6,0 1/1:1,1:2:3:41,3,0 +chr17 55962653 . G T 52.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.819;DP=87;Dels=0.01;FS=28.854;HaplotypeScore=17.8413;MLEAC=2;MLEAF=0.250;MQ=25.33;MQ0=0;MQRankSum=-0.274;QD=1.23;ReadPosRankSum=-1.253;SB=-6.670e-02 GT:AD:DP:GQ:PL 0/1:21,2:23:18:18,0,278 0/1:16,4:20:76:76,0,247 0/0:27,1:28:36:0,36,598 0/0:15,0:15:21:0,21,223 +chr17 56270409 . G T 691.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.943;DP=204;Dels=0.00;FS=161.871;HaplotypeScore=5.5602;MLEAC=4;MLEAF=0.500;MQ=33.57;MQ0=0;MQRankSum=-4.837;QD=3.39;ReadPosRankSum=0.096;SB=-1.254e-02 GT:AD:DP:GQ:PL 0/1:30,14:44:99:299,0,973 0/1:41,6:48:82:82,0,1047 0/1:45,16:61:99:316,0,1148 0/1:46,5:51:37:37,0,978 +chr17 56277212 . T A 114.96 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.687;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=5.9824;MLEAC=4;MLEAF=0.500;MQ=24.14;MQ0=0;MQRankSum=0.255;QD=2.35;ReadPosRankSum=-0.334;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:4:4,0,221 0/1:8,1:9:15:15,0,58 0/1:8,4:12:94:94,0,134 0/1:10,2:12:43:43,0,44 +chr17 56292144 . C A 126.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.525;DP=102;Dels=0.00;FS=35.827;HaplotypeScore=1.9114;MLEAC=2;MLEAF=0.250;MQ=36.62;MQ0=0;MQRankSum=-0.581;QD=3.02;ReadPosRankSum=-1.490;SB=-1.911e+00 GT:AD:DP:GQ:PL 0/0:27,2:29:13:0,13,696 0/0:30,0:30:69:0,69,835 0/1:18,3:21:60:60,0,444 0/1:16,5:21:99:108,0,354 +chr17 56326309 . TG T 330.07 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.945;DP=121;FS=0.000;HaplotypeScore=113.4290;MLEAC=3;MLEAF=0.375;MQ=22.49;MQ0=0;MQRankSum=-3.168;QD=3.55;RPA=2,1;RU=G;ReadPosRankSum=3.697;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:22,6:25:99:159,0,465 0/1:15,5:16:83:83,0,164 0/0:25,2:21:12:0,12,534 0/1:34,7:20:99:140,0,242 +chr17 56348230 rs2071409 T G 341.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.161;DB;DP=112;Dels=0.04;FS=9.334;HaplotypeScore=7.2152;MLEAC=3;MLEAF=0.375;MQ=35.59;MQ0=0;MQRankSum=-3.252;QD=3.88;ReadPosRankSum=1.415;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,5:26:96:96,0,482 0/0:24,0:24:66:0,66,874 0/1:22,7:29:99:179,0,558 0/1:24,5:29:99:110,0,612 +chr17 56357281 . C T 40.71 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.508;DP=69;Dels=0.03;FS=11.915;HaplotypeScore=12.5476;MLEAC=2;MLEAF=0.250;MQ=30.23;MQ0=0;MQRankSum=0.102;QD=1.13;ReadPosRankSum=-0.834;SB=-3.446e+00 GT:AD:DP:GQ:PL 0/0:13,0:13:24:0,24,290 0/1:13,3:17:62:62,0,200 0/0:20,0:20:42:0,42,522 0/1:15,2:17:20:20,0,249 +chr17 56386508 . T G 33.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.786;DP=105;Dels=0.01;FS=9.797;HaplotypeScore=16.0498;MLEAC=2;MLEAF=0.250;MQ=21.44;MQ0=0;MQRankSum=-1.857;QD=0.65;ReadPosRankSum=0.683;SB=4.75 GT:AD:DP:GQ:PL 0/1:21,2:23:35:35,0,202 0/1:21,7:28:39:39,0,291 0/0:30,1:32:21:0,21,232 0/0:17,4:21:8:0,8,252 +chr17 56435027 . G A 35.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.325;DP=160;Dels=0.01;FS=22.624;HaplotypeScore=18.0282;MLEAC=3;MLEAF=0.375;MQ=29.11;MQ0=0;MQRankSum=-1.513;QD=0.30;ReadPosRankSum=0.997;SB=-1.840e+00 GT:AD:DP:GQ:PL 0/1:37,4:41:43:43,0,681 0/1:31,4:35:30:30,0,441 0/0:41,3:44:10:0,10,702 0/1:35,4:39:2:2,0,582 +chr17 56438301 rs2680701 G A 66.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.457;DB;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.2622;MLEAC=3;MLEAF=0.375;MQ=25.37;MQ0=0;MQRankSum=-1.402;QD=2.23;ReadPosRankSum=1.150;SB=-1.997e+01 GT:AD:DP:GQ:PL 0/1:7,2:9:29:29,0,164 0/1:5,3:8:30:30,0,108 0/1:10,3:13:51:51,0,214 0/0:14,1:15:21:0,21,213 +chr17 56620758 . A C 64.29 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.897;DP=232;Dels=0.03;FS=61.128;HaplotypeScore=16.3802;MLEAC=2;MLEAF=0.250;MQ=32.28;MQ0=0;MQRankSum=-4.581;QD=0.56;ReadPosRankSum=3.836;SB=-1.626e+00 GT:AD:DP:GQ:PL 0/0:54,2:56:8:0,8,617 0/0:53,5:58:10:0,10,629 0/1:64,6:70:52:52,0,729 0/1:36,5:41:53:53,0,422 +chr17 56643159 . A AT 207.55 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.802;DP=36;FS=17.779;HaplotypeScore=17.6694;MLEAC=4;MLEAF=0.500;MQ=30.20;MQ0=0;MQRankSum=-0.880;QD=5.77;RPA=1,2;RU=T;ReadPosRankSum=0.671;SB=-1.224e-02;STR GT:AD:DP:GQ:PL 0/1:6,1:6:24:24,0,168 0/1:6,2:8:60:60,0,226 0/1:7,2:9:75:75,0,194 0/1:9,3:10:99:100,0,192 +chr17 56811410 . A T 43.34 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.935;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.1326;MLEAC=4;MLEAF=0.500;MQ=20.89;MQ0=0;MQRankSum=-0.377;QD=2.71;ReadPosRankSum=2.281;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:17:41,0,17 0/0:7,1:8:6:0,6,49 1/1:4,1:5:3:25,3,0 0/1:3,1:4:20:20,0,22 +chr17 57134221 . A C 131.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.825;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.2785;MLEAC=4;MLEAF=0.500;MQ=34.44;MQ0=0;MQRankSum=-3.067;QD=1.78;ReadPosRankSum=1.192;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:49:49,0,236 0/1:23,3:26:49:49,0,361 0/1:16,4:20:39:39,0,288 0/1:5,2:7:37:37,0,171 +chr17 57287287 . A G 66.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.115;DP=25;Dels=0.00;FS=6.107;HaplotypeScore=1.3267;MLEAC=2;MLEAF=0.250;MQ=24.76;MQ0=0;MQRankSum=0.478;QD=5.13;ReadPosRankSum=-0.903;SB=0.655 GT:AD:DP:GQ:PL 0/1:4,3:7:27:81,0,27 0/0:5,0:5:6:0,6,84 0/1:5,1:6:25:25,0,38 0/0:7,0:7:3:0,3,43 +chr17 57698208 rs1528492 C G 55.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DB;DP=12;Dels=0.00;FS=6.455;HaplotypeScore=3.4702;MLEAC=2;MLEAF=1.00;MQ=18.68;MQ0=0;MQRankSum=1.231;QD=9.29;ReadPosRankSum=1.231;SB=-4.176e+01 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:4,2:6:6:87,6,0 +chr17 58004002 . G T 197.13 . AC=7;AF=0.875;AN=8;BaseQRankSum=-2.317;DP=117;Dels=0.02;FS=0.000;HaplotypeScore=1.5562;MLEAC=7;MLEAF=0.875;MQ=12.74;MQ0=0;MQRankSum=1.921;QD=1.68;ReadPosRankSum=-0.288;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,5:26:22:70,0,22 1/1:29,7:36:3:33,3,0 1/1:27,11:38:9:83,9,0 1/1:11,4:15:6:53,6,0 +chr17 58150572 . A T 70.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.674;DP=282;Dels=0.00;FS=30.626;HaplotypeScore=9.8142;MLEAC=3;MLEAF=0.375;MQ=33.63;MQ0=0;MQRankSum=-4.399;QD=0.35;ReadPosRankSum=-0.033;SB=-1.245e-01 GT:AD:DP:GQ:PL 0/1:63,6:69:19:19,0,1469 0/1:82,10:92:73:73,0,1877 0/0:78,3:81:98:0,98,2198 0/1:34,5:39:22:22,0,804 +chr17 58232756 . T A 163.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.971;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.2192;MLEAC=4;MLEAF=0.500;MQ=30.48;MQ0=0;MQRankSum=-2.349;QD=3.48;ReadPosRankSum=0.371;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:13:13,0,167 0/1:12,2:14:48:48,0,122 0/1:7,3:10:66:66,0,121 0/1:10,4:14:79:79,0,188 +chr17 58366022 . T A 84.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.698;DP=84;Dels=0.02;FS=26.345;HaplotypeScore=17.9028;MLEAC=3;MLEAF=0.375;MQ=21.60;MQ0=0;MQRankSum=-1.261;QD=1.36;ReadPosRankSum=2.585;SB=0.283 GT:AD:DP:GQ:PL 0/1:21,5:26:53:53,0,248 0/0:17,4:21:18:0,18,171 0/1:18,6:24:61:61,0,107 0/1:10,1:11:13:13,0,109 +chr17 59146396 . A T 41.27 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.737;DP=37;Dels=0.00;FS=5.453;HaplotypeScore=0.2290;MLEAC=1;MLEAF=0.125;MQ=24.24;MQ0=0;MQRankSum=1.115;QD=3.17;ReadPosRankSum=-0.544;SB=0.015 GT:AD:DP:GQ:PL 0/1:10,3:13:76:76,0,152 0/0:12,0:12:18:0,18,221 0/0:7,1:8:3:0,3,26 0/0:4,0:4:3:0,3,28 +chr17 59466090 . T A 60.36 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.778;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.4567;MLEAC=2;MLEAF=0.250;MQ=36.36;MQ0=0;MQRankSum=-1.415;QD=1.21;ReadPosRankSum=2.446;SB=-1.870e+00 GT:AD:DP:GQ:PL 0/0:30,1:31:15:0,15,518 0/1:24,2:26:6:6,0,549 0/0:30,1:32:44:0,44,798 0/1:20,4:24:93:93,0,420 +chr17 59469562 . C T 55.84 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.442;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3108;MLEAC=4;MLEAF=0.500;MQ=24.88;MQ0=0;MQRankSum=1.393;QD=1.09;ReadPosRankSum=0.645;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,1:11:19:24,0,19 0/1:12,1:13:17:20,0,17 0/1:13,1:14:14:14,0,137 0/1:11,2:13:40:40,0,101 +chr17 59534790 . G C 75.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.150;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.4937;MLEAC=3;MLEAF=0.375;MQ=29.15;MQ0=0;MQRankSum=-2.130;QD=1.94;ReadPosRankSum=1.576;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,1:16:10:0,10,318 0/1:10,3:13:71:71,0,71 0/1:9,1:10:14:14,0,141 0/1:14,2:16:33:33,0,222 +chr17 59955467 . C T 277.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.244;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.8352;MLEAC=4;MLEAF=0.500;MQ=33.89;MQ0=0;MQRankSum=0.294;QD=2.33;ReadPosRankSum=0.494;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,2:34:23:23,0,402 0/1:35,6:41:99:125,0,488 0/1:33,5:38:99:114,0,493 0/1:4,2:6:58:58,0,84 +chr17 59989085 . A C 217.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.107;DP=117;Dels=0.01;FS=2.708;HaplotypeScore=8.1383;MLEAC=3;MLEAF=0.375;MQ=28.03;MQ0=0;MQRankSum=2.141;QD=2.09;ReadPosRankSum=0.207;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,5:31:98:98,0,323 0/1:26,2:29:42:42,0,176 0/1:35,7:43:99:119,0,192 0/0:13,0:13:3:0,3,29 +chr17 60045435 . T C 40.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.670;DP=115;Dels=0.01;FS=2.600;HaplotypeScore=2.1280;MLEAC=1;MLEAF=0.125;MQ=37.69;MQ0=0;MQRankSum=-1.710;QD=2.93;ReadPosRankSum=-0.190;SB=-1.173e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:66:0,66,857 0/0:40,0:40:81:0,81,1015 0/0:33,0:33:75:0,75,907 0/1:11,3:14:77:77,0,192 +chr17 60464688 rs9909704 C T 2952 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.649;DB;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.2499;MLEAC=8;MLEAF=1.00;MQ=34.83;MQ0=0;MQRankSum=-1.732;QD=34.73;ReadPosRankSum=1.106;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:1,17:18:51:637,51,0 1/1:0,27:27:81:1047,81,0 1/1:2,32:34:51:1089,51,0 1/1:0,6:6:18:218,18,0 +chr17 60753705 . G C 195.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.974;DP=48;Dels=0.00;FS=22.860;HaplotypeScore=2.9332;MLEAC=4;MLEAF=0.500;MQ=24.98;MQ0=0;MQRankSum=-1.593;QD=4.08;ReadPosRankSum=1.717;SB=-3.369e+00 GT:AD:DP:GQ:PL 0/1:9,2:11:1:1,0,156 0/1:6,4:10:29:72,0,29 0/1:11,5:16:88:120,0,88 0/1:7,4:11:43:43,0,67 +chr17 60755746 rs7350907 T G 211.55 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.666;DB;DP=12;Dels=0.00;FS=6.532;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=28.63;MQ0=0;MQRankSum=1.179;QD=21.15;ReadPosRankSum=1.179;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:82,6,0 1/1:1,4:5:12:130,12,0 0/0:2,0:2:3:0,3,34 1/1:2,1:3:3:43,3,0 +chr17 60758153 . T G 42.02 . AC=2;AF=0.500;AN=4;BaseQRankSum=-0.573;DP=15;Dels=0.00;FS=2.774;HaplotypeScore=2.0545;MLEAC=3;MLEAF=0.750;MQ=16.81;MQ0=0;MQRankSum=1.683;QD=6.00;ReadPosRankSum=-1.683;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 0/0:3,0:3:3:0,3,27 1/1:4,3:7:9:78,9,0 +chr17 60759347 rs2460300 A G 1200.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.250;DB;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.4830;MLEAC=8;MLEAF=1.00;MQ=30.69;MQ0=0;MQRankSum=2.183;QD=31.58;ReadPosRankSum=0.437;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,7:8:21:231,21,0 1/1:0,7:7:21:258,21,0 1/1:1,14:15:42:503,42,0 1/1:1,7:8:21:247,21,0 +chr17 60802372 rs111291268 G A 237.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.693;DB;DP=194;Dels=0.00;FS=1.223;HaplotypeScore=9.8602;MLEAC=1;MLEAF=0.125;MQ=38.02;MQ0=0;MQRankSum=-2.386;QD=5.67;ReadPosRankSum=-1.099;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,138,1770 0/1:30,12:42:99:274,0,961 0/0:61,0:61:99:0,165,2166 0/0:43,0:43:99:0,108,1390 +chr17 61417390 . C G 52.41 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.626;DP=149;Dels=0.03;FS=0.000;HaplotypeScore=35.0269;MLEAC=1;MLEAF=0.125;MQ=26.71;MQ0=0;MQRankSum=-1.438;QD=0.97;ReadPosRankSum=2.997;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:35,1:36:5:0,5,218 0/1:46,5:51:88:88,0,383 0/0:47,0:47:51:0,51,509 0/0:10,0:10:15:0,15,143 +chr17 61495810 . C T 277.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.331;DP=207;Dels=0.02;FS=2.185;HaplotypeScore=7.6579;MLEAC=2;MLEAF=0.250;MQ=31.44;MQ0=0;MQRankSum=0.155;QD=2.70;ReadPosRankSum=0.471;SB=0.024 GT:AD:DP:GQ:PL 0/1:52,10:62:99:159,0,1090 0/0:54,1:55:88:0,88,1299 0/0:43,2:45:19:0,19,765 0/1:32,8:40:99:160,0,520 +chr17 61549272 . C A 226.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.765;DP=187;Dels=0.00;FS=171.682;HaplotypeScore=5.8928;MLEAC=4;MLEAF=0.500;MQ=16.24;MQ0=0;MQRankSum=1.371;QD=1.21;ReadPosRankSum=3.353;SB=-2.860e+00 GT:AD:DP:GQ:PL 0/1:38,6:44:48:48,0,259 0/1:37,10:47:76:76,0,174 0/1:41,12:53:99:103,0,219 0/1:31,12:43:42:42,0,273 +chr17 61560044 . G A 251.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.685;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=11.3910;MLEAC=3;MLEAF=0.375;MQ=28.63;MQ0=0;MQRankSum=-3.862;QD=3.07;ReadPosRankSum=0.700;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,5:29:76:76,0,290 0/0:26,2:28:14:0,14,388 0/1:24,1:25:8:8,0,144 0/1:16,12:28:88:210,0,88 +chr17 61574181 . A C 148.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.050;DP=76;Dels=0.01;FS=87.803;HaplotypeScore=4.7025;MLEAC=3;MLEAF=0.375;MQ=32.68;MQ0=0;MQRankSum=-1.866;QD=2.35;ReadPosRankSum=-1.077;SB=-2.309e+00 GT:AD:DP:GQ:PL 0/1:15,3:18:56:56,0,317 0/1:16,3:20:38:38,0,358 0/0:11,1:13:5:0,5,354 0/1:18,6:24:96:96,0,372 +chr17 61710154 . A C 326.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.633;DP=162;Dels=0.01;FS=113.672;HaplotypeScore=3.5823;MLEAC=3;MLEAF=0.375;MQ=34.30;MQ0=0;MQRankSum=0.509;QD=2.57;ReadPosRankSum=-0.594;SB=0.576 GT:AD:DP:GQ:PL 0/1:29,8:37:99:181,0,675 0/1:31,6:37:99:151,0,629 0/1:47,4:51:38:38,0,1029 0/0:33,2:35:14:0,14,732 +chr17 61791293 . C G 156.67 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.794;DP=69;Dels=0.03;FS=5.857;HaplotypeScore=19.1880;MLEAC=5;MLEAF=0.625;MQ=18.39;MQ0=0;MQRankSum=1.947;QD=2.27;ReadPosRankSum=-1.947;SB=0.132 GT:AD:DP:GQ:PL 0/1:12,2:14:29:33,0,29 1/1:10,3:13:3:23,3,0 0/1:15,3:18:50:78,0,50 0/1:13,9:22:17:65,0,17 +chr17 61805607 rs2137144 G A 1022.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.825;DB;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=5;MLEAF=0.625;MQ=40.11;MQ0=0;MQRankSum=-3.513;QD=16.23;ReadPosRankSum=1.652;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:42:568,42,0 0/1:15,6:21:99:181,0,518 0/1:13,9:22:99:290,0,451 0/1:5,1:6:29:29,0,107 +chr17 61805660 . A C 186.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.295;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=4.2393;MLEAC=3;MLEAF=0.375;MQ=31.27;MQ0=0;MQRankSum=-3.062;QD=2.78;ReadPosRankSum=2.073;SB=0.282 GT:AD:DP:GQ:PL 0/0:19,1:20:12:0,12,436 0/1:21,6:27:81:81,0,479 0/1:24,5:29:99:105,0,488 0/1:7,3:10:43:43,0,109 +chr17 61833880 . A G 30.70 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.012;DP=102;Dels=0.03;FS=57.565;HaplotypeScore=8.3892;MLEAC=3;MLEAF=0.375;MQ=34.25;MQ0=0;MQRankSum=-0.415;QD=0.44;ReadPosRankSum=-1.288;SB=0.169 GT:AD:DP:GQ:PL 0/1:20,1:21:9:9,0,272 0/0:32,1:33:19:0,19,614 0/1:23,3:27:45:45,0,470 0/1:17,1:18:19:19,0,214 +chr17 61908268 . G T 279.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.410;DP=133;Dels=0.00;FS=58.083;HaplotypeScore=7.4069;MLEAC=3;MLEAF=0.375;MQ=29.51;MQ0=0;MQRankSum=1.271;QD=2.77;ReadPosRankSum=1.998;SB=-4.727e+00 GT:AD:DP:GQ:PL 0/1:26,10:36:99:286,0,257 0/0:31,1:32:37:0,37,719 0/1:31,4:35:31:31,0,624 0/1:28,2:30:4:4,0,594 +chr17 61914201 . A G 238.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.460;DP=112;Dels=0.00;FS=2.320;HaplotypeScore=7.1723;MLEAC=4;MLEAF=0.500;MQ=31.18;MQ0=0;MQRankSum=1.182;QD=2.13;ReadPosRankSum=-2.252;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:59:59,0,478 0/1:27,3:30:52:52,0,478 0/1:26,3:29:41:41,0,438 0/1:25,6:31:99:129,0,424 +chr17 61958030 . G A 34.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.004;DP=235;Dels=0.00;FS=22.785;HaplotypeScore=0.4916;MLEAC=3;MLEAF=0.375;MQ=8.25;MQ0=0;MQRankSum=2.629;QD=0.19;ReadPosRankSum=1.293;SB=-8.726e-01 GT:AD:DP:GQ:PL 0/0:52,0:52:6:0,6,65 0/1:58,5:63:37:37,0,44 0/1:60,3:63:14:14,0,53 0/1:56,1:57:18:25,0,18 +chr17 62038590 . G A 724.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.123;DP=84;Dels=0.01;FS=6.179;HaplotypeScore=11.2247;MLEAC=4;MLEAF=0.500;MQ=27.85;MQ0=0;MQRankSum=1.298;QD=8.63;ReadPosRankSum=3.061;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,7:22:99:181,0,230 0/1:16,7:23:99:143,0,207 0/1:9,8:18:99:222,0,123 0/1:12,8:20:99:221,0,138 +chr17 62084134 . C G 476.49 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.757;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.1663;MLEAC=5;MLEAF=0.625;MQ=29.51;MQ0=0;MQRankSum=0.445;QD=12.88;ReadPosRankSum=0.064;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,7:11:5:192,0,5 0/1:7,4:11:67:112,0,67 1/1:3,3:6:9:105,9,0 0/1:5,4:9:83:111,0,83 +chr17 62232073 rs4968693 A T 1055.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.486;DB;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=2.2827;MLEAC=3;MLEAF=0.375;MQ=35.00;MQ0=0;MQRankSum=0.263;QD=10.56;ReadPosRankSum=0.694;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:33,0:33:99:0,99,1280 0/1:15,14:30:99:435,0,434 0/1:23,15:38:99:462,0,648 0/1:22,8:30:99:202,0,679 +chr17 62265838 rs139181352 TC T 2914.50 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.550;DB;DP=92;FS=0.000;HaplotypeScore=8.9256;MLEAC=7;MLEAF=0.875;MQ=38.91;MQ0=0;MQRankSum=-2.343;QD=31.68;RPA=3,2;RU=C;ReadPosRankSum=1.591;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:10,9:19:99:312,0,314 1/1:6,18:23:63:854,63,0 1/1:6,18:24:69:908,69,0 1/1:2,20:23:66:894,66,0 +chr17 62496749 . C G 432.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.934;DP=91;Dels=0.00;FS=56.170;HaplotypeScore=3.6611;MLEAC=4;MLEAF=0.500;MQ=34.93;MQ0=0;MQRankSum=-0.620;QD=4.75;ReadPosRankSum=2.652;SB=-1.013e-01 GT:AD:DP:GQ:PL 0/1:18,3:21:65:65,0,366 0/1:24,8:32:99:210,0,466 0/1:21,8:29:99:185,0,380 0/1:8,1:9:15:15,0,222 +chr17 62747045 . T A 58.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.672;DP=189;Dels=0.00;FS=10.861;HaplotypeScore=4.2454;MLEAC=1;MLEAF=0.125;MQ=19.91;MQ0=0;MQRankSum=0.874;QD=1.19;ReadPosRankSum=-0.164;SB=13.00 GT:AD:DP:GQ:PL 0/0:41,1:43:21:0,21,240 0/0:44,0:44:12:0,12,157 0/0:53,0:53:39:0,39,427 0/1:43,5:49:94:94,0,202 +chr17 63010457 . T C 84.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.256;DP=155;Dels=0.00;FS=85.588;HaplotypeScore=9.5162;MLEAC=2;MLEAF=0.250;MQ=34.45;MQ0=0;MQRankSum=-1.957;QD=1.13;ReadPosRankSum=0.914;SB=-8.158e-01 GT:AD:DP:GQ:PL 0/1:36,5:41:72:72,0,866 0/1:30,4:34:54:54,0,757 0/0:40,3:43:17:0,17,1162 0/0:36,1:37:70:0,70,1121 +chr17 63052550 . C T 454.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.385;DP=184;Dels=0.01;FS=169.894;HaplotypeScore=2.0879;MLEAC=4;MLEAF=0.500;MQ=21.16;MQ0=0;MQRankSum=4.117;QD=2.47;ReadPosRankSum=0.057;SB=-1.273e+00 GT:AD:DP:GQ:PL 0/1:38,7:45:99:130,0,257 0/1:42,5:47:99:101,0,276 0/1:47,9:56:99:106,0,352 0/1:28,7:35:99:160,0,163 +chr17 63554591 rs2240308 G A 1654.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.021;DB;DP=127;Dels=0.00;FS=4.555;HaplotypeScore=5.3833;MLEAC=4;MLEAF=0.500;MQ=33.46;MQ0=0;MQRankSum=-1.674;QD=13.03;ReadPosRankSum=-0.359;SB=-4.090e+02 GT:AD:DP:GQ:PL 0/1:17,16:33:99:451,0,450 0/1:18,16:34:99:488,0,418 0/1:17,13:31:99:334,0,578 0/1:15,14:29:99:424,0,433 +chr17 63558040 . T C 35.03 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=2.7995;MLEAC=1;MLEAF=0.500;MQ=22.40;MQ0=0;MQRankSum=1.026;QD=7.01;ReadPosRankSum=1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 0/1:3,2:5:21:65,0,21 ./. +chr17 64025926 rs9908964 G T 2672.06 . AC=8;AF=1.00;AN=8;DB;DP=78;Dels=0.03;FS=0.000;HaplotypeScore=0.9816;MLEAC=8;MLEAF=1.00;MQ=35.63;MQ0=0;QD=34.26;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,18:19:51:658,51,0 1/1:2,24:26:72:896,72,0 1/1:0,26:26:78:1001,78,0 1/1:1,4:5:12:156,12,0 +chr17 64208396 rs1558359 G A 119.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.006;DB;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5891;MLEAC=2;MLEAF=0.250;MQ=33.68;MQ0=0;MQRankSum=-1.665;QD=5.69;ReadPosRankSum=-0.531;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:12:64:64,0,240 0/1:5,4:9:97:97,0,100 0/0:10,0:10:27:0,27,366 0/0:9,0:9:24:0,24,298 +chr17 64738820 . T A 160.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.907;DP=166;Dels=0.01;FS=25.436;HaplotypeScore=5.6765;MLEAC=3;MLEAF=0.375;MQ=35.09;MQ0=0;MQRankSum=-1.977;QD=1.26;ReadPosRankSum=-1.823;SB=-1.056e-02 GT:AD:DP:GQ:PL 0/0:37,1:38:67:0,67,1132 0/1:37,5:42:78:78,0,942 0/1:42,6:48:75:75,0,1140 0/1:30,4:36:51:51,0,827 +chr17 64880558 . G C 71.95 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.301;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.4524;MLEAC=4;MLEAF=0.500;MQ=26.74;MQ0=0;MQRankSum=-0.333;QD=1.50;ReadPosRankSum=1.483;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:47:47,0,133 0/1:7,3:10:27:27,0,157 0/1:14,1:15:10:10,0,117 0/1:7,1:8:23:30,0,23 +chr17 65027089 . G C 33.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.341;DP=111;Dels=0.00;FS=11.519;HaplotypeScore=15.7799;MLEAC=3;MLEAF=0.375;MQ=25.98;MQ0=0;MQRankSum=-1.022;QD=0.39;ReadPosRankSum=-0.324;SB=-3.073e+00 GT:AD:DP:GQ:PL 0/0:23,0:25:30:0,30,306 0/1:25,3:28:1:1,0,243 0/1:30,3:33:24:24,0,407 0/1:21,3:25:48:48,0,256 +chr17 65040817 . T G 394.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.241;DP=123;Dels=0.00;FS=148.427;HaplotypeScore=3.6215;MLEAC=4;MLEAF=0.500;MQ=36.92;MQ0=0;MQRankSum=-1.187;QD=3.21;ReadPosRankSum=1.430;SB=-2.047e+00 GT:AD:DP:GQ:PL 0/1:32,10:42:99:227,0,960 0/1:24,5:29:96:96,0,718 0/1:25,4:29:50:50,0,744 0/1:19,4:23:64:64,0,448 +chr17 65051295 rs140836897 G C 98.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.798;DB;DP=122;Dels=0.01;FS=14.886;HaplotypeScore=7.4423;MLEAC=4;MLEAF=0.500;MQ=25.62;MQ0=0;MQRankSum=-2.802;QD=0.81;ReadPosRankSum=-0.047;SB=-9.755e-01 GT:AD:DP:GQ:PL 0/1:16,3:20:37:37,0,200 0/1:38,6:44:36:36,0,447 0/1:24,6:30:65:65,0,429 0/1:22,5:27:1:1,0,309 +chr17 65105564 . T A 70.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.286;DP=170;Dels=0.01;FS=43.123;HaplotypeScore=3.8871;MLEAC=1;MLEAF=0.125;MQ=37.80;MQ0=0;MQRankSum=-4.100;QD=2.03;ReadPosRankSum=2.718;SB=-7.092e+00 GT:AD:DP:GQ:PL 0/0:39,3:42:35:0,35,1315 0/0:44,2:47:49:0,49,1243 0/0:44,1:45:82:0,82,1307 0/1:29,6:35:99:107,0,878 +chr17 65144721 . A T 105.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-7.797;DP=544;Dels=0.00;FS=109.430;HaplotypeScore=4.6357;MLEAC=1;MLEAF=0.125;MQ=38.96;MQ0=0;MQRankSum=-2.468;QD=1.01;ReadPosRankSum=0.771;SB=-6.422e+00 GT:AD:DP:GQ:PL 0/0:139,8:148:99:0,118,4504 0/0:129,10:139:36:0,36,4364 0/0:142,10:152:72:0,72,4461 0/1:93,12:105:99:142,0,2840 +chr17 65988183 . T G 32.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.504;DP=163;Dels=0.00;FS=35.552;HaplotypeScore=1.6511;MLEAC=3;MLEAF=0.375;MQ=15.20;MQ0=0;MQRankSum=1.473;QD=0.29;ReadPosRankSum=0.458;SB=-1.499e+00 GT:AD:DP:GQ:PL 0/1:37,2:39:7:7,0,156 0/1:40,3:43:42:42,0,67 0/0:48,1:49:24:0,24,278 0/1:27,5:32:26:26,0,36 +chr17 66091537 . C G 62.24 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.474;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=17.68;MQ0=0;MQRankSum=1.866;QD=2.59;ReadPosRankSum=-1.297;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:42:49,0,42 ./. 0/0:15,0:15:6:0,6,59 0/1:11,2:13:31:51,0,31 +chr17 66265406 . A T 35.07 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.582;DP=38;Dels=0.00;FS=8.827;HaplotypeScore=0.4853;MLEAC=4;MLEAF=0.500;MQ=22.80;MQ0=0;MQRankSum=1.280;QD=0.92;ReadPosRankSum=-0.577;SB=-3.722e-01 GT:AD:DP:GQ:PL 0/1:9,2:11:36:36,0,129 0/1:9,1:10:15:15,0,109 0/1:9,1:10:14:14,0,118 0/1:6,1:7:12:12,0,98 +chr17 66424923 rs1002446 C T 486.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.918;DB;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=0.9122;MLEAC=4;MLEAF=0.500;MQ=34.50;MQ0=0;MQRankSum=-0.761;QD=8.85;ReadPosRankSum=1.385;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,6:13:99:198,0,252 0/1:8,7:15:99:226,0,192 0/1:8,4:12:87:87,0,287 0/1:11,3:14:18:18,0,311 +chr17 66918617 . C G 44.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.877;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.4957;MLEAC=3;MLEAF=0.375;MQ=28.36;MQ0=0;MQRankSum=-0.930;QD=1.49;ReadPosRankSum=3.094;SB=-1.476e+00 GT:AD:DP:GQ:PL 0/1:12,3:15:32:32,0,213 0/0:13,2:15:0:0,0,303 0/1:11,3:15:51:51,0,255 0/0:4,0:4:6:0,6,69 +chr17 66982400 . A T 146.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.554;DP=211;Dels=0.00;FS=40.702;HaplotypeScore=0.7170;MLEAC=4;MLEAF=0.500;MQ=17.05;MQ0=0;MQRankSum=4.106;QD=0.96;ReadPosRankSum=-3.160;SB=-1.821e+00 GT:AD:DP:GQ:PL 0/1:40,6:46:32:32,0,328 0/1:46,8:54:50:50,0,267 0/0:54,4:58:0:0,0,465 0/1:47,6:53:99:104,0,323 +chr17 66986140 . T G 314.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.102;DP=96;Dels=0.00;FS=5.363;HaplotypeScore=2.9104;MLEAC=4;MLEAF=0.500;MQ=26.87;MQ0=0;MQRankSum=-1.058;QD=3.28;ReadPosRankSum=4.571;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,5:24:99:111,0,254 0/1:20,4:24:57:57,0,215 0/1:25,8:33:99:140,0,255 0/1:12,3:15:43:49,0,43 +chr17 67210969 . T A 201.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.231;DP=104;Dels=0.00;FS=29.100;HaplotypeScore=4.1966;MLEAC=3;MLEAF=0.375;MQ=27.31;MQ0=0;MQRankSum=-0.121;QD=2.84;ReadPosRankSum=0.505;SB=-1.306e-01 GT:AD:DP:GQ:PL 0/0:32,1:33:57:0,57,616 0/1:21,7:28:99:116,0,149 0/1:27,5:32:99:113,0,240 0/1:10,1:11:16:16,0,123 +chr17 67211899 . A G 149.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.014;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=1.4387;MLEAC=3;MLEAF=0.375;MQ=26.25;MQ0=0;MQRankSum=0.894;QD=3.75;ReadPosRankSum=0.179;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:11:97,0,11 0/1:12,2:14:24:24,0,165 0/1:10,3:13:35:70,0,35 0/0:3,0:3:3:0,3,27 +chr17 71192887 . T G 101.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.031;DP=89;Dels=0.04;FS=7.534;HaplotypeScore=18.1417;MLEAC=4;MLEAF=0.500;MQ=20.21;MQ0=0;MQRankSum=1.085;QD=1.67;ReadPosRankSum=2.222;SB=1.24 GT:AD:DP:GQ:PL 1/1:17,2:19:3:27,3,0 0/1:15,5:20:53:53,0,110 0/0:26,2:28:4:0,4,197 0/1:14,4:18:64:64,0,81 +chr17 71346943 rs4969107 A G 2906.31 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.190;DB;DP=156;Dels=0.02;FS=0.000;HaplotypeScore=10.7039;MLEAC=8;MLEAF=1.00;MQ=28.14;MQ0=0;MQRankSum=3.481;QD=18.63;ReadPosRankSum=1.981;SB=-2.007e+02 GT:AD:DP:GQ:PL 1/1:10,21:31:43:726,43,0 1/1:17,18:35:6:548,6,0 1/1:19,27:46:81:919,81,0 1/1:17,23:41:17:752,17,0 +chr17 71375393 . C T 98.82 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.388;DP=79;Dels=0.00;FS=2.386;HaplotypeScore=2.8813;MLEAC=4;MLEAF=0.500;MQ=27.73;MQ0=0;MQRankSum=-1.668;QD=1.25;ReadPosRankSum=-0.199;SB=-1.456e-01 GT:AD:DP:GQ:PL 0/1:15,3:18:62:62,0,151 0/1:19,2:21:13:13,0,333 0/1:18,4:22:48:48,0,280 0/1:17,1:18:18:18,0,133 +chr17 71415132 rs6501633 T C 130.76 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.731;DB;DP=9;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=28.84;MQ0=0;MQRankSum=0.731;QD=21.79;ReadPosRankSum=-0.731;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:41,3,0 1/1:1,3:4:9:124,9,0 ./. ./. +chr17 72283316 . C G 33.44 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.211;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.6453;MLEAC=2;MLEAF=0.333;MQ=26.13;MQ0=0;MQRankSum=0.404;QD=2.57;ReadPosRankSum=1.480;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:4,2:6:47:47,0,58 0/1:6,1:7:20:25,0,20 0/0:9,0:9:15:0,15,122 +chr17 72287149 . T G 877.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.975;DP=314;Dels=0.00;FS=25.495;HaplotypeScore=3.7620;MLEAC=4;MLEAF=0.500;MQ=31.62;MQ0=0;MQRankSum=-5.197;QD=2.79;ReadPosRankSum=-1.002;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:59,18:77:99:322,0,907 0/1:70,16:86:99:251,0,1427 0/1:79,13:92:99:113,0,1853 0/1:45,13:58:99:234,0,775 +chr17 72308447 rs1979371 G A 270.22 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.451;DB;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.2080;MLEAC=8;MLEAF=1.00;MQ=23.20;MQ0=0;MQRankSum=2.451;QD=18.01;ReadPosRankSum=1.944;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:39,3,0 1/1:1,3:4:9:104,9,0 1/1:2,2:4:6:52,6,0 1/1:0,4:4:12:113,12,0 +chr17 72310455 . A T 394.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.137;DP=125;Dels=0.01;FS=9.479;HaplotypeScore=6.7895;MLEAC=4;MLEAF=0.500;MQ=29.85;MQ0=0;MQRankSum=0.304;QD=3.16;ReadPosRankSum=-1.407;SB=-1.542e-02 GT:AD:DP:GQ:PL 0/1:30,7:37:99:166,0,462 0/1:21,2:23:27:27,0,319 0/1:33,6:39:99:140,0,334 0/1:20,5:25:99:104,0,303 +chr17 72445381 . T G 30.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.354;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9185;MLEAC=1;MLEAF=0.125;MQ=34.58;MQ0=0;MQRankSum=-0.605;QD=1.36;ReadPosRankSum=0.855;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:18:0,18,181 0/0:23,0:23:30:0,30,316 0/1:19,3:22:66:66,0,232 0/0:16,0:16:27:0,27,289 +chr17 72470927 . T C 33.40 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.347;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.4873;MLEAC=1;MLEAF=0.125;MQ=33.50;MQ0=0;MQRankSum=-1.350;QD=3.71;ReadPosRankSum=0.193;SB=0.071 GT:AD:DP:GQ:PL 0/0:10,0:10:18:0,18,214 0/0:5,0:5:6:0,6,86 0/0:6,0:6:12:0,12,163 0/1:6,3:9:69:69,0,132 +chr17 72473645 . A T 30.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.104;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=5.0302;MLEAC=1;MLEAF=0.125;MQ=34.90;MQ0=0;MQRankSum=-0.111;QD=2.31;ReadPosRankSum=-1.728;SB=0.025 GT:AD:DP:GQ:PL 0/0:22,1:23:20:0,20,510 0/0:20,0:20:33:0,33,396 0/0:26,1:27:46:0,46,826 0/1:9,3:12:66:66,0,222 +chr17 72691823 . C A 32.94 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.319;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.6377;MLEAC=2;MLEAF=0.250;MQ=30.08;MQ0=0;MQRankSum=-0.724;QD=1.94;ReadPosRankSum=1.064;SB=6.98 GT:AD:DP:GQ:PL 0/1:6,1:7:14:14,0,104 0/1:7,3:10:59:59,0,185 0/0:7,0:8:12:0,12,119 0/0:4,0:4:6:0,6,69 +chr17 72694666 . G C 46.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.137;DP=34;Dels=0.00;FS=2.644;HaplotypeScore=2.3152;MLEAC=3;MLEAF=0.375;MQ=23.43;MQ0=0;MQRankSum=0.569;QD=1.72;ReadPosRankSum=0.284;SB=0.189 GT:AD:DP:GQ:PL 0/0:6,1:7:12:0,12,133 0/1:5,2:7:42:52,0,42 0/1:11,1:12:21:21,0,104 0/1:7,1:8:16:16,0,36 +chr17 72840692 . T A 292.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.035;DP=82;Dels=0.00;FS=2.673;HaplotypeScore=4.5217;MLEAC=4;MLEAF=0.500;MQ=23.93;MQ0=0;MQRankSum=2.503;QD=3.57;ReadPosRankSum=0.659;SB=-9.573e-04 GT:AD:DP:GQ:PL 0/1:14,4:18:93:112,0,93 0/1:15,4:19:57:108,0,57 0/1:23,3:26:59:59,0,83 0/1:16,3:19:56:56,0,59 +chr17 72914480 . A C 31.02 . AC=4;AF=1.00;AN=4;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=25.38;MQ0=0;QD=15.51;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:34,3,0 ./. 1/1:0,1:1:3:30,3,0 ./. +chr17 73089852 rs4788863 T C 3810.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.787;DB;DP=137;Dels=0.00;FS=10.108;HaplotypeScore=0.4162;MLEAC=7;MLEAF=0.875;MQ=36.39;MQ0=0;MQRankSum=-0.411;QD=27.81;ReadPosRankSum=2.023;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:3,22:25:66:856,66,0 0/1:21,19:40:99:584,0,602 1/1:1,42:43:99:1598,123,0 1/1:7,22:29:32:772,32,0 +chr17 73208182 rs12946479 C T 186.31 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.077;DB;DP=26;Dels=0.00;FS=3.183;HaplotypeScore=2.1209;MLEAC=4;MLEAF=0.500;MQ=24.41;MQ0=0;MQRankSum=0.495;QD=11.64;ReadPosRankSum=0.363;SB=-4.220e-03 GT:AD:DP:GQ:PL 1/1:1,4:5:12:148,12,0 0/1:1,4:5:27:54,0,27 0/0:9,1:10:9:0,9,95 0/1:5,1:6:31:31,0,49 +chr17 73282636 rs2306219 C T 3180.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.717;DB;DP=107;Dels=0.02;FS=15.073;HaplotypeScore=1.6340;MLEAC=8;MLEAF=1.00;MQ=31.36;MQ0=0;MQRankSum=1.708;QD=29.73;ReadPosRankSum=2.689;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:3,26:29:75:921,75,0 1/1:0,23:24:69:804,69,0 1/1:3,19:22:29:655,29,0 1/1:3,27:30:59:840,59,0 +chr17 73316558 . A G 274.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.671;DP=137;Dels=0.00;FS=37.765;HaplotypeScore=32.1370;MLEAC=4;MLEAF=0.500;MQ=23.36;MQ0=0;MQRankSum=0.004;QD=2.00;ReadPosRankSum=-0.304;SB=-1.196e-02 GT:AD:DP:GQ:PL 0/1:26,6:33:44:44,0,330 0/1:27,7:35:55:55,0,272 0/1:30,8:38:99:107,0,296 0/1:25,6:31:99:111,0,182 +chr17 73389652 . T A 977.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.581;DP=175;Dels=0.00;FS=296.550;HaplotypeScore=7.9175;MLEAC=4;MLEAF=0.500;MQ=35.18;MQ0=0;MQRankSum=-5.424;QD=5.59;ReadPosRankSum=1.677;SB=-2.916e+00 GT:AD:DP:GQ:PL 0/1:34,14:49:99:301,0,1012 0/1:31,17:48:99:358,0,663 0/1:28,9:37:99:136,0,855 0/1:31,10:41:99:225,0,870 +chr17 73481508 . G A 31.31 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.030;DP=59;Dels=0.00;FS=1.789;HaplotypeScore=3.7875;MLEAC=3;MLEAF=0.375;MQ=24.46;MQ0=0;MQRankSum=-1.515;QD=0.82;ReadPosRankSum=0.480;SB=2.427e-03 GT:AD:DP:GQ:PL 0/1:9,1:10:11:11,0,79 0/1:5,4:9:39:39,0,61 0/0:20,1:21:45:0,45,479 0/1:16,3:19:24:24,0,209 +chr17 73499697 rs7207376 T C 524.87 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.382;DB;DP=45;Dels=0.00;FS=10.136;HaplotypeScore=2.7591;MLEAC=5;MLEAF=0.625;MQ=29.46;MQ0=0;MQRankSum=-0.437;QD=11.66;ReadPosRankSum=1.557;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:2,5:7:15:178,15,0 0/1:8,6:15:99:130,0,145 0/1:8,5:13:99:142,0,139 0/1:5,4:10:20:120,0,20 +chr17 73501932 . C G 124.45 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.489;DP=66;Dels=0.00;FS=14.343;HaplotypeScore=11.1723;MLEAC=4;MLEAF=0.500;MQ=27.47;MQ0=0;MQRankSum=0.753;QD=1.89;ReadPosRankSum=-1.778;SB=-7.536e-01 GT:AD:DP:GQ:PL 0/1:13,2:15:6:6,0,177 0/1:11,3:14:94:94,0,98 0/1:12,1:13:20:20,0,108 0/1:22,2:24:46:46,0,167 +chr17 73518203 rs9911502 G C 161.77 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.589;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=33.18;MQ0=0;MQRankSum=-1.589;QD=17.97;ReadPosRankSum=0.000;SB=-4.055e+01 GT:AD:DP:GQ:PL 1/1:0,1:1:3:32,3,0 1/1:1,1:2:3:34,3,0 0/1:2,1:3:32:32,0,74 1/1:0,3:3:9:105,9,0 +chr17 73565143 . C A 84.24 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.873;DP=42;Dels=0.00;FS=27.238;HaplotypeScore=0.9713;MLEAC=4;MLEAF=0.500;MQ=31.60;MQ0=0;MQRankSum=-0.252;QD=2.01;ReadPosRankSum=-0.175;SB=-1.879e+00 GT:AD:DP:GQ:PL 0/1:6,1:7:15:15,0,144 0/1:11,2:13:48:48,0,215 0/1:11,1:12:8:8,0,329 0/1:7,3:10:55:55,0,99 +chr17 73615166 . C T 149.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.321;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.2413;MLEAC=4;MLEAF=0.500;MQ=31.57;MQ0=0;MQRankSum=-1.988;QD=2.41;ReadPosRankSum=1.298;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:7:7,0,314 0/1:12,3:15:36:36,0,196 0/1:15,2:17:36:36,0,279 0/1:9,6:15:91:112,0,91 +chr17 73615962 rs820150 T C 169 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.645;DB;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.6607;MLEAC=1;MLEAF=0.125;MQ=37.44;MQ0=0;MQRankSum=-2.614;QD=10.56;ReadPosRankSum=1.653;SB=-2.898e+01 GT:AD:DP:GQ:PL 0/0:9,0:9:21:0,21,261 0/1:7,7:16:99:205,0,176 0/0:22,0:22:57:0,57,763 0/0:15,0:15:39:0,39,449 +chr17 73625629 rs820192 A C 949.07 . AC=8;AF=1.00;AN=8;DB;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.2416;MLEAC=8;MLEAF=1.00;MQ=26.54;MQ0=0;QD=25.65;SB=-1.189e+02 GT:AD:DP:GQ:PL 1/1:2,8:10:24:248,24,0 1/1:0,10:10:30:318,30,0 1/1:1,9:10:27:289,27,0 1/1:1,6:7:12:133,12,0 +chr17 73627181 . C T 76.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.426;DP=61;Dels=0.00;FS=56.259;HaplotypeScore=3.1685;MLEAC=4;MLEAF=0.500;MQ=25.80;MQ0=0;MQRankSum=-1.575;QD=1.26;ReadPosRankSum=0.955;SB=-9.607e-01 GT:AD:DP:GQ:PL 0/1:12,2:14:39:39,0,143 0/1:15,3:18:61:61,0,279 0/1:16,3:19:6:6,0,314 0/1:8,2:10:12:12,0,84 +chr17 73658489 rs820159 T C 7869.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.937;DB;DP=227;Dels=0.01;FS=18.712;HaplotypeScore=4.6597;MLEAC=8;MLEAF=1.00;MQ=36.15;MQ0=0;MQRankSum=3.153;QD=34.67;ReadPosRankSum=2.723;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1925,147,0 1/1:3,52:55:99:2025,124,0 1/1:7,55:62:99:2072,138,0 1/1:8,48:56:99:1847,125,0 +chr17 73735955 . C T 104.06 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.793;DP=69;Dels=0.01;FS=54.096;HaplotypeScore=7.9184;MLEAC=3;MLEAF=0.375;MQ=25.41;MQ0=0;MQRankSum=0.425;QD=2.04;ReadPosRankSum=1.229;SB=0.209 GT:AD:DP:GQ:PL 0/0:17,1:18:14:0,14,313 0/1:13,2:15:42:42,0,107 0/1:15,4:19:83:83,0,306 0/1:15,1:16:17:22,0,17 +chr17 73827205 rs1135688 T C 660.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.598;DB;DP=61;Dels=0.00;FS=19.528;HaplotypeScore=1.8636;MLEAC=3;MLEAF=0.375;MQ=32.85;MQ0=0;MQRankSum=-0.538;QD=14.06;ReadPosRankSum=0.455;SB=-2.743e+02 GT:AD:DP:GQ:PL 0/1:4,7:11:72:205,0,72 0/0:14,0:14:33:0,33,388 0/1:8,11:19:99:358,0,223 0/1:11,6:17:99:141,0,239 +chr17 73838933 . C G 209.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.252;DP=197;Dels=0.00;FS=100.883;HaplotypeScore=5.2391;MLEAC=4;MLEAF=0.500;MQ=29.84;MQ0=0;MQRankSum=-0.832;QD=1.06;ReadPosRankSum=-0.933;SB=-4.820e+00 GT:AD:DP:GQ:PL 0/1:44,3:47:1:1,0,869 0/1:42,6:48:99:108,0,713 0/1:51,5:56:34:34,0,1153 0/1:37,8:46:99:107,0,740 +chr17 73840243 rs3744010 G A 563.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.388;DB;DP=65;Dels=0.02;FS=3.909;HaplotypeScore=1.4369;MLEAC=3;MLEAF=0.375;MQ=32.28;MQ0=0;MQRankSum=1.043;QD=10.44;ReadPosRankSum=-0.024;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:7,7:14:99:222,0,197 0/0:11,0:11:30:0,30,354 0/1:13,8:22:99:233,0,328 0/1:12,5:17:99:152,0,205 +chr17 73969953 rs3744033 A G 83.40 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.628;DB;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.1954;MLEAC=1;MLEAF=0.125;MQ=33.12;MQ0=0;MQRankSum=-1.826;QD=6.95;ReadPosRankSum=1.596;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,5:12:99:118,0,183 0/0:14,0:14:33:0,33,429 0/0:15,2:17:2:0,2,398 0/0:2,0:2:3:0,3,36 +chr17 74014634 rs7218767 G T 165.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.076;DB;DP=50;Dels=0.00;FS=11.453;HaplotypeScore=4.7470;MLEAC=1;MLEAF=0.125;MQ=33.71;MQ0=0;MQRankSum=1.174;QD=15.00;ReadPosRankSum=0.259;SB=-1.975e+01 GT:AD:DP:GQ:PL 0/0:15,0:15:39:0,39,464 0/1:5,6:11:99:201,0,124 0/0:14,0:14:42:0,42,542 0/0:10,0:10:18:0,18,226 +chr17 74053653 . T C 85.40 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.065;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=8.7654;MLEAC=2;MLEAF=0.250;MQ=26.13;MQ0=0;MQRankSum=-0.335;QD=2.67;ReadPosRankSum=1.004;SB=19.92 GT:AD:DP:GQ:PL 0/1:12,4:16:93:93,0,100 0/1:13,2:15:33:33,0,62 0/0:12,0:12:18:0,18,207 0/0:8,0:9:6:0,6,77 +chr17 74141510 . C T 110.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.584;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9472;MLEAC=4;MLEAF=0.500;MQ=26.36;MQ0=0;MQRankSum=1.129;QD=4.11;ReadPosRankSum=-1.129;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,44 1/1:4,2:6:6:55,6,0 0/1:10,3:14:80:80,0,106 0/1:6,1:7:19:19,0,22 +chr17 74152366 rs881502 A G 122.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.959;DB;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.5320;MLEAC=1;MLEAF=0.125;MQ=33.67;MQ0=0;MQRankSum=-1.121;QD=4.10;ReadPosRankSum=0.122;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:33,0:33:72:0,72,926 0/1:23,7:30:99:159,0,366 0/0:33,0:35:66:0,66,857 0/0:26,0:26:54:0,54,676 +chr17 74308959 rs146995464 C T 127.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.186;DB;DP=177;Dels=0.01;FS=46.380;HaplotypeScore=12.7260;MLEAC=2;MLEAF=0.250;MQ=29.01;MQ0=0;MQRankSum=-1.680;QD=0.99;ReadPosRankSum=3.905;SB=21.07 GT:AD:DP:GQ:PL 0/1:35,6:42:86:86,0,593 0/1:38,5:48:49:49,0,381 0/0:46,1:49:40:0,40,627 0/1:32,3:37:35:35,0,303 +chr17 74392732 . G A 38.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.535;DP=101;Dels=0.00;FS=31.661;HaplotypeScore=4.0110;MLEAC=2;MLEAF=0.250;MQ=26.89;MQ0=0;MQRankSum=-0.500;QD=0.82;ReadPosRankSum=2.346;SB=-1.154e+00 GT:AD:DP:GQ:PL 0/1:22,4:26:52:52,0,392 0/1:18,3:21:28:28,0,195 0/0:30,2:32:26:0,26,688 0/0:22,0:22:33:0,33,344 +chr17 74533572 . T G 71.44 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.046;DP=25;Dels=0.00;FS=2.754;HaplotypeScore=2.9735;MLEAC=5;MLEAF=0.625;MQ=22.30;MQ0=0;MQRankSum=1.342;QD=2.86;ReadPosRankSum=-0.324;SB=-7.086e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:26,3,0 0/1:8,2:10:46:46,0,91 0/1:7,1:8:11:11,0,97 1/1:3,1:4:3:30,3,0 +chr17 74583165 . C A 331.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.496;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.0528;MLEAC=4;MLEAF=0.500;MQ=34.72;MQ0=0;MQRankSum=-2.472;QD=6.14;ReadPosRankSum=1.950;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:54:54,0,180 0/1:12,3:15:66:66,0,277 0/1:11,5:16:99:140,0,228 0/1:5,6:11:99:114,0,129 +chr17 74583260 . A C 172.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.952;DP=72;Dels=0.01;FS=42.767;HaplotypeScore=5.0694;MLEAC=4;MLEAF=0.500;MQ=21.61;MQ0=0;MQRankSum=1.812;QD=2.39;ReadPosRankSum=-0.551;SB=-5.914e-01 GT:AD:DP:GQ:PL 0/1:17,3:20:32:32,0,170 0/1:14,2:16:42:42,0,163 0/1:18,1:19:7:7,0,164 0/1:10,6:16:37:133,0,37 +chr17 74750062 . G T 33.19 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.085;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=5.5877;MLEAC=4;MLEAF=0.500;MQ=24.40;MQ0=0;MQRankSum=-1.225;QD=1.28;ReadPosRankSum=1.733;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:9:9,0,139 0/1:4,1:5:17:17,0,19 0/1:4,3:7:31:31,0,78 0/1:4,1:5:18:18,0,36 +chr17 74901390 . G T 169.22 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.038;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.1590;MLEAC=6;MLEAF=0.750;MQ=19.82;MQ0=0;MQRankSum=2.491;QD=4.45;ReadPosRankSum=3.477;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,4:9:35:87,0,35 1/1:6,2:8:6:55,6,0 1/1:9,3:12:3:28,3,0 0/1:7,2:9:41:42,0,41 +chr17 74928921 rs77352627 C T 50.01 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.573;DB;DP=9;Dels=0.00;FS=2.808;HaplotypeScore=0.2892;MLEAC=3;MLEAF=0.750;MQ=19.89;MQ0=0;MQRankSum=1.683;QD=5.56;ReadPosRankSum=-0.573;SB=-2.101e+01 GT:AD:DP:GQ:PL ./. 1/1:3,2:5:6:53,6,0 0/1:3,1:4:27:33,0,27 ./. +chr17 75187406 . G C 167.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.062;DP=258;Dels=0.00;FS=41.621;HaplotypeScore=8.1806;MLEAC=3;MLEAF=0.375;MQ=34.60;MQ0=0;MQRankSum=0.055;QD=0.79;ReadPosRankSum=-1.280;SB=-1.482e-01 GT:AD:DP:GQ:PL 0/1:62,5:67:15:15,0,1494 0/1:57,9:66:99:151,0,1420 0/1:73,7:80:45:45,0,1864 0/0:43,1:44:65:0,65,1023 +chr17 75205611 . T A 102.91 . AC=3;AF=0.500;AN=6;BaseQRankSum=2.001;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=9.1006;MLEAC=3;MLEAF=0.500;MQ=20.39;MQ0=0;MQRankSum=1.415;QD=5.72;ReadPosRankSum=-1.317;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,2:9:3:0,3,22 1/1:7,2:9:6:61,6,0 0/1:6,3:9:11:81,0,11 ./. +chr17 75484200 rs144365572 TC T 485.14 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.361;DB;DP=24;FS=0.000;HaplotypeScore=4.8365;MLEAC=6;MLEAF=0.750;MQ=31.26;MQ0=0;MQRankSum=-2.598;QD=20.21;RPA=3,2;RU=C;ReadPosRankSum=-1.278;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:4,1:6:26:26,0,147 0/1:2,3:5:66:107,0,66 1/1:0,5:4:12:163,12,0 1/1:2,6:6:18:244,18,0 +chr17 76087754 rs3764377 A G 57.10 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.830;DB;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.8295;MLEAC=1;MLEAF=0.125;MQ=37.45;MQ0=0;MQRankSum=-0.138;QD=7.14;ReadPosRankSum=-0.553;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,245 0/1:5,3:8:93:93,0,149 0/0:11,0:11:21:0,21,273 0/0:5,0:5:12:0,12,161 +chr17 76100518 . G A 44.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.488;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=7.4753;MLEAC=3;MLEAF=0.375;MQ=28.56;MQ0=0;MQRankSum=-1.772;QD=1.18;ReadPosRankSum=1.583;SB=10.28 GT:AD:DP:GQ:PL 0/1:11,1:12:6:6,0,218 0/0:6,2:9:15:0,15,148 0/1:9,1:11:12:12,0,121 0/1:11,3:15:68:68,0,127 +chr17 76122655 . C T 30.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.389;DP=59;Dels=0.03;FS=5.010;HaplotypeScore=10.6049;MLEAC=3;MLEAF=0.375;MQ=20.57;MQ0=0;MQRankSum=0.107;QD=0.81;ReadPosRankSum=-1.354;SB=0.787 GT:AD:DP:GQ:PL 0/1:9,4:13:30:30,0,98 0/1:8,1:9:26:26,0,51 0/0:18,2:20:7:0,7,276 0/1:14,1:15:17:17,0,71 +chr17 76183586 . A G 102.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.581;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.9752;MLEAC=3;MLEAF=0.375;MQ=29.51;MQ0=0;MQRankSum=-0.211;QD=2.22;ReadPosRankSum=0.211;SB=0.109 GT:AD:DP:GQ:PL 0/1:12,1:13:13:13,0,93 0/1:13,3:16:69:69,0,192 0/0:22,2:24:16:0,16,326 0/1:14,3:17:63:63,0,210 +chr17 76395430 rs2292642 C T 2292.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.576;DB;DP=125;Dels=0.00;FS=34.533;HaplotypeScore=1.2215;MLEAC=5;MLEAF=0.625;MQ=34.81;MQ0=0;MQRankSum=-4.130;QD=18.34;ReadPosRankSum=-2.015;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:96:1183,96,0 0/1:15,18:33:99:541,0,461 0/1:24,10:34:99:243,0,792 0/1:14,12:26:99:371,0,360 +chr17 76422815 rs72914883 A G 403.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.062;DB;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.7099;MLEAC=3;MLEAF=0.375;MQ=33.85;MQ0=0;MQRankSum=-2.472;QD=11.88;ReadPosRankSum=1.006;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,9:17:99:270,0,215 0/0:10,0:10:30:0,30,375 0/1:5,5:10:99:140,0,164 0/1:4,3:7:37:37,0,120 +chr17 76433981 . C T 49.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.194;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.8010;MLEAC=3;MLEAF=0.375;MQ=35.50;MQ0=0;MQRankSum=-1.038;QD=1.90;ReadPosRankSum=-1.349;SB=0.691 GT:AD:DP:GQ:PL 0/1:7,1:8:25:34,0,25 0/0:10,1:11:4:0,4,324 0/1:12,1:13:7:7,0,338 0/1:3,2:5:49:49,0,61 +chr17 76440919 . T A 99.04 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.241;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=10.3203;MLEAC=4;MLEAF=0.500;MQ=23.81;MQ0=0;MQRankSum=-2.169;QD=1.32;ReadPosRankSum=3.339;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:12:12,0,157 0/1:17,3:20:56:56,0,208 0/1:21,3:24:12:12,0,296 0/1:10,6:16:61:61,0,64 +chr17 76449367 . A C 51.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.163;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2167;MLEAC=1;MLEAF=0.125;MQ=35.45;MQ0=0;MQRankSum=-0.489;QD=1.62;ReadPosRankSum=-1.450;SB=-8.682e-03 GT:AD:DP:GQ:PL 0/1:27,5:32:88:88,0,650 0/0:20,0:20:51:0,51,607 0/0:31,1:32:26:0,26,584 0/0:25,0:25:45:0,45,489 +chr17 76458883 . CA C 358.42 . AC=6;AF=0.750;AN=8;BaseQRankSum=-2.389;DP=44;FS=0.000;HaplotypeScore=26.9943;MLEAC=6;MLEAF=0.750;MQ=22.22;MQ0=0;MQRankSum=0.903;QD=8.15;ReadPosRankSum=-2.177;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:1,4:5:15:183,15,0 1/1:5,4:7:4:75,4,0 0/1:9,3:5:50:68,0,50 0/1:9,3:8:8:85,0,8 +chr17 76464659 . A T 170.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.166;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=1.5468;MLEAC=2;MLEAF=0.250;MQ=34.36;MQ0=0;MQRankSum=1.230;QD=5.33;ReadPosRankSum=-2.278;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:52:52,0,201 0/0:11,1:12:5:0,5,305 0/0:16,1:17:11:0,11,404 0/1:10,6:16:99:159,0,270 +chr17 76482256 rs691142 A G 3387.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.805;DB;DP=121;Dels=0.03;FS=22.266;HaplotypeScore=3.1157;MLEAC=8;MLEAF=1.00;MQ=31.74;MQ0=0;MQRankSum=1.854;QD=27.99;ReadPosRankSum=3.198;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:2,28:30:75:869,75,0 1/1:4,23:27:30:689,30,0 1/1:2,29:31:84:1020,84,0 1/1:3,26:29:45:809,45,0 +chr17 76482608 . C T 74.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.575;DP=95;Dels=0.00;FS=8.293;HaplotypeScore=7.4052;MLEAC=3;MLEAF=0.375;MQ=30.77;MQ0=0;MQRankSum=-2.120;QD=0.96;ReadPosRankSum=-1.243;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,3:21:55:55,0,382 0/1:22,3:25:1:1,0,514 0/1:26,5:31:58:58,0,689 0/0:17,1:18:33:0,33,383 +chr17 76488614 . G C 95.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.273;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=0.7832;MLEAC=4;MLEAF=0.500;MQ=26.83;MQ0=0;MQRankSum=-0.129;QD=1.88;ReadPosRankSum=-0.314;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:35:35,0,273 0/1:8,3:12:60:60,0,67 0/1:12,1:13:14:14,0,173 0/1:10,2:12:29:29,0,166 +chr17 76498692 rs930571 C T 5743.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.420;DB;DP=171;Dels=0.01;FS=6.316;HaplotypeScore=1.4835;MLEAC=8;MLEAF=1.00;MQ=34.06;MQ0=0;MQRankSum=-0.931;QD=33.58;ReadPosRankSum=1.809;SB=-2.691e+03 GT:AD:DP:GQ:PL 1/1:1,38:39:76:1305,76,0 1/1:0,35:35:99:1349,105,0 1/1:2,49:51:99:1672,138,0 1/1:4,41:45:99:1417,117,0 +chr17 76526623 . C A 911.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.069;DP=96;Dels=0.01;FS=80.224;HaplotypeScore=16.3373;MLEAC=4;MLEAF=0.500;MQ=28.05;MQ0=0;MQRankSum=-1.749;QD=9.50;ReadPosRankSum=2.182;SB=-2.876e+00 GT:AD:DP:GQ:PL 0/1:7,10:17:92:261,0,92 0/1:13,12:25:73:232,0,73 0/1:19,9:28:99:209,0,289 0/1:14,11:25:99:252,0,158 +chr17 76528591 rs11868065 C T 2057.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.298;DB;DP=114;Dels=0.00;FS=11.959;HaplotypeScore=3.4526;MLEAC=5;MLEAF=0.625;MQ=31.91;MQ0=0;MQRankSum=-2.819;QD=18.05;ReadPosRankSum=0.597;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:72:856,72,0 0/1:15,14:29:99:398,0,264 0/1:15,22:37:99:617,0,402 0/1:13,9:23:99:232,0,275 +chr17 76565317 . A C 122 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.080;DP=97;Dels=0.00;FS=27.039;HaplotypeScore=5.2874;MLEAC=3;MLEAF=0.375;MQ=24.75;MQ0=0;MQRankSum=1.277;QD=1.69;ReadPosRankSum=0.858;SB=-7.939e-02 GT:AD:DP:GQ:PL 0/1:23,2:25:15:15,0,290 0/1:27,5:32:85:85,0,453 0/0:24,1:25:28:0,28,484 0/1:12,3:15:65:65,0,91 +chr17 76619883 rs7501592 G A 43.01 . AC=4;AF=1.00;AN=4;DB;DP=6;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=20.13;MQ0=0;QD=10.75;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:37,3,0 1/1:2,1:3:3:39,3,0 ./. ./. +chr17 76802197 . A G,T 37.14 . AC=1,1;AF=0.125,0.125;AN=8;BaseQRankSum=-2.616;DP=130;Dels=0.00;FS=4.655;HaplotypeScore=1.7349;MLEAC=1,1;MLEAF=0.125,0.125;MQ=33.50;MQ0=0;MQRankSum=-1.192;QD=0.63;ReadPosRankSum=-0.024;SB=-2.449e+01 GT:AD:DP:GQ:PL 0/2:28,1,3:32:39:39,75,825,0,726,744 0/0:28,0,1:29:38:0,63,771,38,745,742 0/0:40,0,2:42:23:0,84,998,23,938,932 0/1:22,4,1:27:68:68,0,438,82,425,529 +chr17 76867185 rs55743137 G T 516.93 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.000;DB;DP=23;Dels=0.04;FS=8.239;HaplotypeScore=0.4470;MLEAC=7;MLEAF=0.875;MQ=30.83;MQ0=0;MQRankSum=0.318;QD=22.48;ReadPosRankSum=-0.212;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,5:7:15:207,15,0 0/1:3,3:6:55:91,0,55 1/1:0,7:7:21:226,21,0 1/1:0,2:2:3:36,3,0 +chr17 76992943 . G A 62.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.689;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=38.3526;MLEAC=2;MLEAF=0.250;MQ=22.78;MQ0=0;MQRankSum=-3.102;QD=0.92;ReadPosRankSum=1.703;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:31,5:37:7:0,7,312 0/1:31,2:34:6:6,0,319 0/1:20,12:33:95:95,0,219 0/0:17,1:19:12:0,12,130 +chr17 77076206 . G A 119.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.604;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.8876;MLEAC=3;MLEAF=0.375;MQ=25.93;MQ0=0;MQRankSum=0.333;QD=4.00;ReadPosRankSum=0.696;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:47:67,0,47 0/1:8,2:10:41:41,0,79 0/1:7,2:9:23:55,0,23 0/0:13,0:13:15:0,15,167 +chr17 77711882 . A G 37.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.843;DP=97;Dels=0.00;FS=2.307;HaplotypeScore=1.7933;MLEAC=3;MLEAF=0.375;MQ=33.81;MQ0=0;MQRankSum=-4.234;QD=0.54;ReadPosRankSum=-0.006;SB=-1.967e-02 GT:AD:DP:GQ:PL 0/0:26,1:27:37:0,37,825 0/1:16,3:19:24:24,0,430 0/1:27,5:32:32:32,0,859 0/1:16,3:19:25:25,0,342 +chr17 77753191 rs35124694 C T 166.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.815;DB;DP=59;Dels=0.00;FS=3.110;HaplotypeScore=0.9567;MLEAC=3;MLEAF=0.375;MQ=31.82;MQ0=0;MQRankSum=0.701;QD=3.55;ReadPosRankSum=1.280;SB=-7.257e+01 GT:AD:DP:GQ:PL 0/1:8,4:12:99:110,0,206 0/0:12,0:12:30:0,30,348 0/1:15,3:18:49:49,0,374 0/1:14,3:17:51:51,0,263 +chr17 78039291 . C G 100.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.354;DP=110;Dels=0.03;FS=18.503;HaplotypeScore=24.7873;MLEAC=2;MLEAF=0.250;MQ=24.90;MQ0=0;MQRankSum=0.524;QD=1.77;ReadPosRankSum=2.307;SB=10.17 GT:AD:DP:GQ:PL 0/0:16,1:18:12:0,12,144 0/1:24,1:25:11:11,0,158 0/1:24,5:30:99:130,0,211 0/0:32,1:34:21:0,21,206 +chr17 78061494 . G T 132.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.544;DP=116;Dels=0.01;FS=58.254;HaplotypeScore=5.6944;MLEAC=2;MLEAF=0.250;MQ=32.84;MQ0=0;MQRankSum=-0.511;QD=2.07;ReadPosRankSum=0.823;SB=-8.816e-01 GT:AD:DP:GQ:PL 0/1:21,4:25:79:79,0,401 0/0:21,2:24:15:0,15,398 0/0:27,0:28:57:0,57,621 0/1:32,6:38:95:95,0,502 +chr17 78079669 rs1042395 G A 297.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.047;DB;DP=47;Dels=0.04;FS=0.000;HaplotypeScore=7.3215;MLEAC=4;MLEAF=0.500;MQ=24.21;MQ0=0;MQRankSum=1.277;QD=6.33;ReadPosRankSum=-1.067;SB=-1.031e+02 GT:AD:DP:GQ:PL 0/1:7,3:10:13:59,0,13 0/1:4,2:7:21:63,0,21 0/1:7,5:12:99:106,0,170 0/1:12,4:16:99:112,0,145 +chr17 78084692 . C T 33.28 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.095;DP=72;Dels=0.00;FS=34.758;HaplotypeScore=3.6682;MLEAC=1;MLEAF=0.125;MQ=30.62;MQ0=0;MQRankSum=-0.763;QD=2.38;ReadPosRankSum=-0.206;SB=-1.055e+01 GT:AD:DP:GQ:PL 0/0:18,1:19:0:0,0,382 0/1:11,3:14:68:68,0,298 0/0:21,1:22:42:0,42,527 0/0:15,1:17:9:0,9,352 +chr17 78092540 . C G 31.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.833;DP=105;Dels=0.01;FS=5.107;HaplotypeScore=10.5169;MLEAC=2;MLEAF=0.250;MQ=22.93;MQ0=0;MQRankSum=0.603;QD=0.55;ReadPosRankSum=0.891;SB=13.45 GT:AD:DP:GQ:PL 0/1:28,2:30:8:8,0,290 0/1:24,3:27:63:63,0,130 0/0:22,0:24:33:0,33,278 0/0:22,0:23:9:0,9,70 +chr17 78156642 . C G 41.89 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.266;DP=47;Dels=0.00;FS=2.534;HaplotypeScore=3.3823;MLEAC=2;MLEAF=0.250;MQ=26.50;MQ0=0;MQRankSum=-2.046;QD=2.46;ReadPosRankSum=2.380;SB=-9.653e-01 GT:AD:DP:GQ:PL 0/1:3,5:8:44:74,0,44 0/0:15,3:18:24:0,24,240 0/1:8,1:9:7:7,0,175 0/0:10,2:12:18:0,18,203 +chr17 78162170 rs28674001 G A 574.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.783;DB;DP=90;Dels=0.01;FS=9.624;HaplotypeScore=2.7019;MLEAC=3;MLEAF=0.375;MQ=34.74;MQ0=0;MQRankSum=1.155;QD=8.84;ReadPosRankSum=1.047;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/1:14,5:19:99:161,0,381 0/0:24,0:24:63:0,63,794 0/1:16,9:25:99:288,0,471 0/1:14,7:21:99:169,0,405 +chr17 78199778 . G A 36.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.852;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=5.3338;MLEAC=1;MLEAF=0.125;MQ=27.46;MQ0=0;MQRankSum=-0.661;QD=1.61;ReadPosRankSum=0.718;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,0:26:69:0,69,797 0/1:19,4:23:73:73,0,217 0/0:24,0:24:51:0,51,527 0/0:24,0:24:36:0,36,384 +chr17 78210682 . C A 193.13 . AC=2;AF=0.250;AN=8;BaseQRankSum=-6.555;DP=187;Dels=0.01;FS=249.586;HaplotypeScore=10.1551;MLEAC=2;MLEAF=0.250;MQ=33.15;MQ0=0;MQRankSum=-7.299;QD=2.12;ReadPosRankSum=0.558;SB=-4.723e+00 GT:AD:DP:GQ:PL 0/0:29,3:32:18:0,18,918 0/1:38,8:46:75:75,0,909 0/0:53,10:63:2:0,2,1585 0/1:33,12:45:99:158,0,968 +chr17 78215566 rs12942462 T G 55.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.398;DB;DP=134;Dels=0.00;FS=9.074;HaplotypeScore=2.2124;MLEAC=1;MLEAF=0.125;MQ=35.85;MQ0=0;MQRankSum=-0.118;QD=2.43;ReadPosRankSum=-1.148;SB=-1.173e-02 GT:AD:DP:GQ:PL 0/1:18,4:23:92:92,0,591 0/0:40,0:40:99:0,102,1263 0/0:41,0:42:99:0,102,1217 0/0:29,0:29:84:0,84,1033 +chr17 78261910 . A C 119.36 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.491;DP=28;Dels=0.00;FS=9.278;HaplotypeScore=2.2556;MLEAC=5;MLEAF=0.625;MQ=26.02;MQ0=0;MQRankSum=-0.417;QD=4.26;ReadPosRankSum=2.266;SB=-1.315e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:30:30,0,188 0/1:5,2:7:44:50,0,44 1/1:3,2:5:6:60,6,0 0/1:4,2:6:23:23,0,68 +chr17 78319136 rs9674961 G A 2123.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.029;DB;DP=209;Dels=0.00;FS=5.825;HaplotypeScore=3.9211;MLEAC=4;MLEAF=0.500;MQ=36.57;MQ0=0;MQRankSum=-1.358;QD=13.88;ReadPosRankSum=1.171;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:5,35:40:99:1343,102,0 0/0:56,0:56:99:0,156,1969 0/1:40,19:59:99:531,0,1207 0/1:42,12:54:99:298,0,1254 +chr17 78319218 . C A 33.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.897;DP=200;Dels=0.01;FS=117.575;HaplotypeScore=2.1875;MLEAC=1;MLEAF=0.125;MQ=34.88;MQ0=0;MQRankSum=-5.464;QD=0.34;ReadPosRankSum=1.041;SB=-6.045e+00 GT:AD:DP:GQ:PL 0/0:47,3:51:44:0,44,1480 0/0:45,6:51:31:0,31,1411 0/1:50,4:54:2:2,0,1299 0/1:37,6:43:68:68,0,950 +chr17 78327987 . C T 35.79 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.271;DP=26;Dels=0.04;FS=19.445;HaplotypeScore=2.8945;MLEAC=2;MLEAF=0.333;MQ=22.86;MQ0=0;MQRankSum=-0.813;QD=2.11;ReadPosRankSum=0.597;SB=2.32 GT:AD:DP:GQ:PL ./. 0/1:6,3:9:32:58,0,32 0/0:8,1:9:12:0,12,147 0/1:5,2:7:16:16,0,21 +chr17 78446857 rs11657587 C T 92.27 . AC=4;AF=0.667;AN=6;BaseQRankSum=2.520;DB;DP=17;Dels=0.00;FS=9.961;HaplotypeScore=1.6372;MLEAC=4;MLEAF=0.667;MQ=22.22;MQ0=0;MQRankSum=2.228;QD=7.10;ReadPosRankSum=-0.597;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:56:64,0,56 1/1:3,1:4:3:37,3,0 0/1:2,1:4:30:30,0,32 ./. +chr17 78489060 . C A,G 65.95 . AC=1,2;AF=0.125,0.250;AN=8;BaseQRankSum=-1.941;DP=88;Dels=0.01;FS=33.210;HaplotypeScore=8.7270;MLEAC=1,2;MLEAF=0.125,0.250;MQ=29.47;MQ0=0;MQRankSum=-0.583;QD=1.20;ReadPosRankSum=-0.705;SB=-2.714e+00 GT:AD:DP:GQ:PL 0/2:13,0,4:17:88:88,118,487,0,369,357 0/0:32,0,0:32:48:0,48,633,48,633,633 0/1:20,2,1:23:42:42,0,293,44,278,341 0/2:14,0,1:15:10:10,34,327,0,293,290 +chr17 78599655 rs901065 G T 1302.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.526;DB;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.0213;MLEAC=4;MLEAF=0.500;MQ=29.90;MQ0=0;MQRankSum=2.969;QD=14.97;ReadPosRankSum=-0.164;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,12:19:80:375,0,80 0/1:14,12:26:99:372,0,165 0/1:11,11:23:99:338,0,115 0/1:11,8:19:22:260,0,22 +chr17 78617439 rs6565469 T C 565.82 . AC=7;AF=0.875;AN=8;BaseQRankSum=-1.357;DB;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=32.85;MQ0=0;MQRankSum=-2.362;QD=23.58;ReadPosRankSum=-0.251;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,6:6:15:177,15,0 0/1:4,2:6:64:64,0,111 1/1:1,5:6:15:196,15,0 1/1:1,5:6:15:173,15,0 +chr17 78727907 . T G 942.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.953;DP=190;Dels=0.01;FS=39.681;HaplotypeScore=13.5793;MLEAC=4;MLEAF=0.500;MQ=31.53;MQ0=0;MQRankSum=2.704;QD=4.96;ReadPosRankSum=-0.006;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,12:44:99:278,0,568 0/1:43,6:49:99:130,0,608 0/1:42,14:56:99:363,0,577 0/1:29,10:39:99:214,0,405 +chr17 78854149 . A G 354.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.221;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.4338;MLEAC=1;MLEAF=0.125;MQ=40.56;MQ0=0;MQRankSum=0.257;QD=12.24;ReadPosRankSum=2.210;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:37,0:38:99:0,99,1319 0/1:18,11:29:99:391,0,474 0/0:46,0:46:99:0,132,1743 0/0:24,0:24:63:0,63,863 +chr17 78882565 . T C 97.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.778;DP=382;Dels=0.00;FS=159.570;HaplotypeScore=5.9069;MLEAC=2;MLEAF=0.250;MQ=38.46;MQ0=0;MQRankSum=-5.229;QD=0.56;ReadPosRankSum=3.393;SB=-2.790e+00 GT:AD:DP:GQ:PL 0/0:100,0:100:99:0,232,3118 0/1:83,9:92:92:92,0,2344 0/0:99,8:107:4:0,4,2836 0/1:75,7:82:46:46,0,1765 +chr17 78919859 rs2271610 G C 36.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.00;MQ0=0;MQRankSum=0.736;QD=12.26;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:68,6,0 ./. ./. ./. +chr17 78972864 rs11870458 T C 1125.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.124;DB;DP=76;Dels=0.01;FS=23.931;HaplotypeScore=1.8870;MLEAC=5;MLEAF=0.625;MQ=32.09;MQ0=0;MQRankSum=-0.501;QD=14.81;ReadPosRankSum=-0.006;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,8:19:99:254,0,288 1/1:5,12:17:36:448,36,0 0/1:9,11:20:99:328,0,157 0/1:13,6:19:99:141,0,394 +chr17 79226567 . G T 65.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=2.034;DP=31;Dels=0.00;FS=2.715;HaplotypeScore=1.9272;MLEAC=4;MLEAF=1.00;MQ=13.33;MQ0=0;MQRankSum=2.404;QD=4.08;ReadPosRankSum=-0.185;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:5,1:6:3:33,3,0 1/1:8,2:10:6:66,6,0 +chr17 79389251 rs9897258 C T 284.89 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.685;DB;DP=27;Dels=0.00;FS=14.364;HaplotypeScore=0.7132;MLEAC=6;MLEAF=0.750;MQ=21.61;MQ0=0;MQRankSum=3.377;QD=12.95;ReadPosRankSum=1.241;SB=-3.614e+01 GT:AD:DP:GQ:PL 1/1:3,3:6:6:66,6,0 0/0:5,0:5:9:0,9,79 1/1:2,5:7:15:164,15,0 1/1:5,4:9:9:103,9,0 +chr17 79426481 rs4969273 A G 209.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.170;DB;DP=32;Dels=0.03;FS=11.698;HaplotypeScore=3.2491;MLEAC=4;MLEAF=0.500;MQ=24.14;MQ0=0;MQRankSum=1.262;QD=6.55;ReadPosRankSum=1.170;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,1:3:26:26,0,26 0/1:4,4:8:13:93,0,13 0/1:12,4:16:99:105,0,205 0/1:3,1:4:28:28,0,67 +chr17 79427794 rs3744147 C G 290.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.014;DB;DP=67;Dels=0.00;FS=14.295;HaplotypeScore=2.1338;MLEAC=3;MLEAF=0.375;MQ=25.16;MQ0=0;MQRankSum=-0.999;QD=5.70;ReadPosRankSum=-0.250;SB=-4.399e+01 GT:AD:DP:GQ:PL 0/0:16,0:16:33:0,33,337 0/1:11,6:17:71:71,0,261 0/1:10,7:17:99:126,0,189 0/1:11,6:17:99:137,0,153 +chr17 79430635 . A G 43.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.791;DP=64;Dels=0.00;FS=11.223;HaplotypeScore=1.2262;MLEAC=2;MLEAF=0.250;MQ=34.14;MQ0=0;MQRankSum=-1.985;QD=1.56;ReadPosRankSum=1.329;SB=0.265 GT:AD:DP:GQ:PL 0/1:8,3:11:55:55,0,132 0/0:16,0:16:30:0,30,372 0/0:19,1:20:14:0,14,574 0/1:15,2:17:30:30,0,312 +chr17 79478703 . C A 66.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.748;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=11.3138;MLEAC=3;MLEAF=0.375;MQ=18.71;MQ0=0;MQRankSum=0.293;QD=1.14;ReadPosRankSum=0.901;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:11:11,0,78 0/0:12,4:16:9:0,9,94 0/1:23,1:24:16:16,0,101 0/1:11,5:16:56:81,0,56 +chr17 79479025 rs140398667 G C 31.26 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.046;DB;DP=178;Dels=0.01;FS=10.273;HaplotypeScore=6.6175;MLEAC=4;MLEAF=0.500;MQ=10.91;MQ0=0;MQRankSum=2.630;QD=0.24;ReadPosRankSum=-0.123;SB=1.22 GT:AD:DP:GQ:PL 0/0:47,0:47:6:0,6,69 1/1:41,1:42:3:28,3,0 1/1:44,1:45:3:34,3,0 0/1:41,1:42:12:12,0,76 +chr17 79612112 . G T 83.17 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.177;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5678;MLEAC=4;MLEAF=0.500;MQ=25.62;MQ0=0;MQRankSum=-0.736;QD=0.98;ReadPosRankSum=-1.464;SB=-1.970e+01 GT:AD:DP:GQ:PL 0/1:20,2:22:8:8,0,314 0/1:13,2:15:19:19,0,202 0/1:18,3:21:31:31,0,308 0/1:21,5:27:67:67,0,329 +chr17 79804890 . T G 176.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-6.726;DP=528;Dels=0.00;FS=131.159;HaplotypeScore=8.7076;MLEAC=1;MLEAF=0.125;MQ=39.90;MQ0=0;MQRankSum=-6.591;QD=2.13;ReadPosRankSum=3.568;SB=-5.429e+00 GT:AD:DP:GQ:PL 0/0:142,7:149:99:0,197,4972 0/0:138,3:141:99:0,289,4966 0/0:152,3:155:99:0,332,5289 0/1:70,13:83:99:213,0,1945 +chr17 79805003 rs111301737 A G 2805.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.206;DB;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=1.2354;MLEAC=3;MLEAF=0.375;MQ=43.51;MQ0=0;MQRankSum=-2.981;QD=10.79;ReadPosRankSum=1.001;SB=-2.840e+02 GT:AD:DP:GQ:PL 0/0:105,0:105:99:0,310,4291 0/1:69,34:103:99:1125,0,2577 0/1:68,38:106:99:1266,0,2461 0/1:35,15:50:99:458,0,1267 +chr17 79817005 rs1010954 G A 1046.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.329;DB;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=0.9901;MLEAC=3;MLEAF=0.375;MQ=37.26;MQ0=0;MQRankSum=-4.868;QD=12.32;ReadPosRankSum=2.064;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,0:22:66:0,66,881 0/1:19,12:31:99:323,0,622 0/1:17,13:30:99:342,0,607 0/1:11,12:23:99:425,0,246 +chr17 79872536 . T A 102.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.793;DP=79;Dels=0.03;FS=21.643;HaplotypeScore=17.4645;MLEAC=3;MLEAF=0.375;MQ=26.37;MQ0=0;MQRankSum=-3.146;QD=1.55;ReadPosRankSum=-1.151;SB=-6.590e+00 GT:AD:DP:GQ:PL 0/1:25,3:28:3:3,0,422 0/1:15,5:20:84:84,0,259 0/0:10,2:13:18:0,18,202 0/1:10,6:16:56:56,0,95 +chr17 79916841 . T C 44.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.763;DP=108;Dels=0.00;FS=22.100;HaplotypeScore=4.2164;MLEAC=1;MLEAF=0.125;MQ=31.36;MQ0=0;MQRankSum=-1.040;QD=1.96;ReadPosRankSum=0.798;SB=-3.680e+00 GT:AD:DP:GQ:PL 0/0:31,0:31:69:0,69,837 0/0:23,1:24:39:0,39,466 0/0:29,1:30:36:0,36,672 0/1:18,5:23:81:81,0,293 +chr17 79969364 . G A 79.31 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.116;DP=63;Dels=0.02;FS=11.458;HaplotypeScore=5.5303;MLEAC=2;MLEAF=0.250;MQ=26.44;MQ0=0;MQRankSum=-2.370;QD=2.94;ReadPosRankSum=0.137;SB=5.90 GT:AD:DP:GQ:PL 0/1:6,4:10:82:86,0,82 0/0:15,1:17:12:0,12,128 0/0:18,1:19:2:0,2,249 0/1:11,4:16:33:33,0,120 +chr17 79975118 . T C 92.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.694;DP=33;Dels=0.03;FS=3.160;HaplotypeScore=4.4134;MLEAC=4;MLEAF=0.500;MQ=19.31;MQ0=0;MQRankSum=-0.797;QD=2.81;ReadPosRankSum=0.026;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,3:6:21:48,0,21 0/1:4,4:8:17:17,0,33 0/1:8,4:12:49:49,0,99 0/1:5,1:6:21:21,0,22 +chr17 79983587 . C A 35.01 . AC=4;AF=1.00;AN=4;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=30.16;MQ0=0;QD=17.51;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:32,3,0 ./. 1/1:0,1:1:3:36,3,0 ./. +chr17 79993882 . G T 100.39 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.919;DP=67;Dels=0.00;FS=13.679;HaplotypeScore=2.8577;MLEAC=3;MLEAF=0.375;MQ=31.04;MQ0=0;MQRankSum=0.203;QD=1.97;ReadPosRankSum=-1.182;SB=-1.245e+00 GT:AD:DP:GQ:PL 0/1:14,1:15:6:6,0,202 0/0:15,1:16:2:0,2,264 0/1:20,3:23:68:68,0,369 0/1:10,3:13:66:66,0,230 +chr17 80020887 . T G 73.70 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.174;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=1.3055;MLEAC=2;MLEAF=0.250;MQ=33.08;MQ0=0;MQRankSum=-2.646;QD=2.30;ReadPosRankSum=-2.364;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:30:0,30,345 0/0:15,0:16:33:0,33,364 0/1:14,6:20:95:95,0,311 0/1:9,1:10:20:20,0,127 +chr17 80022036 . C G 37.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.422;DP=48;Dels=0.02;FS=11.979;HaplotypeScore=7.1104;MLEAC=2;MLEAF=0.250;MQ=26.95;MQ0=0;MQRankSum=-1.021;QD=1.22;ReadPosRankSum=0.060;SB=0.863 GT:AD:DP:GQ:PL 0/0:6,1:7:15:0,15,173 0/1:9,2:11:41:41,0,73 0/1:17,3:20:38:38,0,318 0/0:9,0:9:15:0,15,161 +chr17 80085788 . G C 72.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.234;DP=180;Dels=0.00;FS=78.406;HaplotypeScore=5.0445;MLEAC=3;MLEAF=0.375;MQ=34.86;MQ0=0;MQRankSum=2.196;QD=0.54;ReadPosRankSum=0.709;SB=-2.896e-01 GT:AD:DP:GQ:PL 0/1:34,5:39:86:86,0,945 0/1:39,3:42:18:18,0,889 0/1:50,4:54:11:11,0,1219 0/0:42,3:45:10:0,10,1121 +chr17 80091910 . T A 76.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.120;DP=71;Dels=0.01;FS=2.499;HaplotypeScore=3.3904;MLEAC=4;MLEAF=0.500;MQ=26.60;MQ0=0;MQRankSum=-0.945;QD=1.08;ReadPosRankSum=1.372;SB=-4.165e-01 GT:AD:DP:GQ:PL 0/1:15,2:17:43:43,0,181 0/1:17,3:20:45:45,0,121 0/1:13,3:16:24:24,0,148 0/1:15,2:17:6:6,0,150 +chr17 80109584 . T G 96.09 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.640;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=11.2784;MLEAC=4;MLEAF=0.500;MQ=21.22;MQ0=0;MQRankSum=-0.234;QD=2.23;ReadPosRankSum=-0.703;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:63:94,0,63 0/1:7,2:9:20:20,0,71 0/1:6,2:8:13:13,0,99 0/1:9,4:13:11:11,0,97 +chr17 80135725 rs11867193 T C 129.27 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.000;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.2500;MLEAC=6;MLEAF=0.750;MQ=36.83;MQ0=0;MQRankSum=0.720;QD=21.55;ReadPosRankSum=1.380;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:88,6,0 0/0:1,0:1:3:0,3,44 1/1:0,1:2:3:43,3,0 1/1:0,1:1:3:40,3,0 +chr17 80332676 . T C 46.05 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.410;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=3.3998;MLEAC=4;MLEAF=0.500;MQ=19.10;MQ0=0;MQRankSum=1.828;QD=1.77;ReadPosRankSum=-0.261;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,2:6:3:32,3,0 0/1:7,3:10:34:34,0,45 1/1:7,2:9:3:23,3,0 0/0:6,0:6:6:0,6,55 +chr17 80356019 rs9905077 C G 801.63 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.788;DB;DP=64;Dels=0.00;FS=6.438;HaplotypeScore=3.1458;MLEAC=5;MLEAF=0.625;MQ=31.00;MQ0=0;MQRankSum=-0.701;QD=12.53;ReadPosRankSum=0.113;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,12:17:36:416,36,0 0/1:6,1:8:16:16,0,177 0/1:13,10:23:99:286,0,261 0/1:11,5:16:99:129,0,231 +chr17 80367206 rs62080965 G A 636.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.848;DB;DP=69;Dels=0.01;FS=11.893;HaplotypeScore=3.9939;MLEAC=5;MLEAF=0.625;MQ=29.40;MQ0=0;MQRankSum=-0.682;QD=11.58;ReadPosRankSum=1.702;SB=0.057 GT:AD:DP:GQ:PL 1/1:2,10:12:27:323,27,0 0/1:18,6:24:99:155,0,386 0/1:10,9:19:99:203,0,249 0/0:10,3:13:1:0,1,245 +chr17 80394494 . A G 94.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.134;DP=39;Dels=0.00;FS=2.634;HaplotypeScore=3.2036;MLEAC=3;MLEAF=0.375;MQ=25.62;MQ0=0;MQRankSum=-0.028;QD=2.79;ReadPosRankSum=0.858;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,77 0/1:13,2:15:43:43,0,91 0/1:3,2:5:30:54,0,30 0/1:10,3:14:40:40,0,148 +chr17 80400398 . G A 80.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.216;DP=133;Dels=0.00;FS=4.580;HaplotypeScore=4.6448;MLEAC=2;MLEAF=0.250;MQ=30.57;MQ0=0;MQRankSum=-1.460;QD=1.28;ReadPosRankSum=-1.425;SB=-1.144e-02 GT:AD:DP:GQ:PL 0/0:32,0:32:63:0,63,716 0/1:28,6:34:71:71,0,480 0/0:37,1:38:43:0,43,641 0/1:25,4:29:51:51,0,427 +chr17 80405551 . C A 184.67 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.600;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=0.750;MQ=29.02;MQ0=0;MQRankSum=1.239;QD=13.19;ReadPosRankSum=1.239;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:40:45,0,40 1/1:1,2:3:6:63,6,0 1/1:2,3:5:9:88,9,0 0/1:1,1:2:21:33,0,21 +chr17 80445903 . C G 756.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.508;DP=156;Dels=0.01;FS=214.467;HaplotypeScore=7.3068;MLEAC=4;MLEAF=0.500;MQ=32.87;MQ0=0;MQRankSum=-2.155;QD=4.85;ReadPosRankSum=1.188;SB=0.022 GT:AD:DP:GQ:PL 0/1:28,11:40:99:248,0,862 0/1:32,8:40:99:144,0,875 0/1:27,12:40:99:293,0,674 0/1:27,8:35:99:114,0,679 +chr17 80534584 . T G 40.33 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.949;DP=125;Dels=0.00;FS=16.347;HaplotypeScore=1.2682;MLEAC=2;MLEAF=0.250;MQ=24.94;MQ0=0;MQRankSum=2.503;QD=0.71;ReadPosRankSum=-1.363;SB=-2.336e+00 GT:AD:DP:GQ:PL 0/0:32,1:33:2:0,2,318 0/1:28,1:29:17:17,0,148 0/0:34,0:35:27:0,27,315 0/1:25,3:28:63:63,0,282 +chr17 80622475 . A C 86.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.783;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.1478;MLEAC=2;MLEAF=0.250;MQ=29.36;MQ0=0;MQRankSum=-0.214;QD=2.17;ReadPosRankSum=-0.676;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:24:0,24,254 0/0:16,0:16:15:0,15,161 0/1:16,3:19:62:62,0,217 0/1:17,4:21:66:66,0,155 +chr17 80828299 . T G 44.98 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.562;DP=53;Dels=0.02;FS=32.758;HaplotypeScore=7.8092;MLEAC=2;MLEAF=0.250;MQ=25.56;MQ0=0;MQRankSum=0.122;QD=1.73;ReadPosRankSum=0.171;SB=6.77 GT:AD:DP:GQ:PL 0/0:9,0:9:15:0,15,199 0/1:9,3:12:69:69,0,95 0/1:12,1:13:17:17,0,172 0/0:17,0:18:18:0,18,222 +chr17 80865681 . A C 39.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.573;DP=109;Dels=0.00;FS=14.578;HaplotypeScore=3.3825;MLEAC=4;MLEAF=0.500;MQ=31.67;MQ0=0;MQRankSum=1.097;QD=0.36;ReadPosRankSum=0.962;SB=-1.213e+00 GT:AD:DP:GQ:PL 0/1:18,2:20:33:33,0,291 0/1:25,1:27:3:3,0,250 0/1:34,2:36:16:16,0,562 0/1:24,2:26:28:28,0,181 +chr18 683116 rs2741182 C G 191.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.202;DB;DP=31;Dels=0.00;FS=2.741;HaplotypeScore=0.4338;MLEAC=3;MLEAF=0.375;MQ=31.98;MQ0=0;MQRankSum=0.165;QD=7.68;ReadPosRankSum=-0.118;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:99:132,0,165 0/0:6,0:6:18:0,18,246 0/1:3,2:5:32:32,0,58 0/1:5,3:8:57:71,0,57 +chr18 706589 rs2612102 A G 4701.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.112;DB;DP=165;Dels=0.00;FS=1.573;HaplotypeScore=0.6361;MLEAC=7;MLEAF=0.875;MQ=38.69;MQ0=0;MQRankSum=-4.348;QD=28.49;ReadPosRankSum=1.599;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1784,106,0 0/1:30,15:45:99:487,0,1005 1/1:5,36:41:59:1397,59,0 1/1:3,30:33:22:1033,22,0 +chr18 739719 . G A 217.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.479;DP=92;Dels=0.04;FS=2.491;HaplotypeScore=3.1444;MLEAC=3;MLEAF=0.375;MQ=33.22;MQ0=0;MQRankSum=-2.759;QD=3.15;ReadPosRankSum=0.200;SB=0.519 GT:AD:DP:GQ:PL 0/1:22,7:29:99:141,0,330 0/0:20,2:22:9:0,9,326 0/1:24,2:26:21:21,0,285 0/1:7,4:11:66:98,0,66 +chr18 2544633 . G T 79.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.532;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=3.8459;MLEAC=2;MLEAF=0.250;MQ=28.02;MQ0=0;MQRankSum=-2.899;QD=2.03;ReadPosRankSum=0.448;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,4:18:86:86,0,118 0/0:14,2:16:12:0,12,100 0/1:18,3:21:33:33,0,103 0/0:5,0:5:3:0,3,26 +chr18 2740714 rs12327477 A G 3209.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=5.100;DB;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=3.6197;MLEAC=6;MLEAF=0.750;MQ=35.01;MQ0=0;MQRankSum=-3.678;QD=15.97;ReadPosRankSum=2.591;SB=-3.330e+02 GT:AD:DP:GQ:PL 0/1:51,10:61:99:187,0,1643 0/1:36,30:66:99:934,0,1065 1/1:9,44:53:48:1563,48,0 1/1:4,17:21:48:572,48,0 +chr18 2771435 . A C 53.66 . AC=1;AF=0.167;AN=6;BaseQRankSum=0.743;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.6608;MLEAC=1;MLEAF=0.167;MQ=26.15;MQ0=0;MQRankSum=1.188;QD=4.88;ReadPosRankSum=1.040;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:24:0,24,256 0/1:8,3:11:86:88,0,86 0/0:6,0:6:6:0,6,71 ./. +chr18 2892474 rs16943989 G A 181.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.742;DB;DP=106;Dels=0.00;FS=6.293;HaplotypeScore=4.1842;MLEAC=1;MLEAF=0.125;MQ=38.23;MQ0=0;MQRankSum=-0.527;QD=7.91;ReadPosRankSum=1.067;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:16,7:23:99:218,0,458 0/0:32,0:32:90:0,90,1164 0/0:35,0:35:96:0,96,1271 0/0:15,0:16:42:0,42,571 +chr18 3119949 . T A 61.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.674;DP=76;Dels=0.00;FS=7.874;HaplotypeScore=4.3548;MLEAC=2;MLEAF=0.250;MQ=28.71;MQ0=0;MQRankSum=0.839;QD=1.04;ReadPosRankSum=1.280;SB=12.04 GT:AD:DP:GQ:PL 0/1:21,1:23:1:1,0,209 0/1:17,2:19:32:32,0,214 0/0:16,0:17:24:0,24,233 0/1:14,3:17:68:68,0,86 +chr18 3406335 . A C 52.26 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.270;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=11.5886;MLEAC=4;MLEAF=0.500;MQ=15.96;MQ0=0;MQRankSum=1.654;QD=0.65;ReadPosRankSum=-1.586;SB=24.65 GT:AD:DP:GQ:PL 0/1:13,2:16:19:19,0,34 0/1:18,3:23:41:41,0,57 1/1:20,1:23:3:24,3,0 0/1:16,1:17:10:10,0,85 +chr18 5956425 rs3737354 C T 4580.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.172;DB;DP=154;Dels=0.00;FS=17.753;HaplotypeScore=0.9839;MLEAC=7;MLEAF=0.875;MQ=32.70;MQ0=0;MQRankSum=-3.027;QD=29.74;ReadPosRankSum=1.897;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1580,129,0 0/1:18,21:39:99:655,0,518 1/1:3,36:39:99:1253,105,0 1/1:2,30:32:90:1092,90,0 +chr18 5969627 . C A 200.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.337;DP=52;Dels=0.00;FS=2.776;HaplotypeScore=2.5349;MLEAC=4;MLEAF=0.500;MQ=30.77;MQ0=0;MQRankSum=-0.571;QD=3.86;ReadPosRankSum=2.357;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:14:41:41,0,157 0/1:8,4:13:87:87,0,102 0/1:10,5:15:99:102,0,167 0/1:8,2:10:13:13,0,53 +chr18 6950999 rs62081480 A G 47 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.205;DB;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=0.8893;MLEAC=1;MLEAF=0.125;MQ=32.69;MQ0=0;MQRankSum=-0.976;QD=5.87;ReadPosRankSum=0.308;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:83:83,0,128 0/0:10,0:10:27:0,27,335 0/0:16,0:16:36:0,36,443 0/0:8,0:8:24:0,24,290 +chr18 7034508 rs566655 T G 166.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.558;DB;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9728;MLEAC=1;MLEAF=0.125;MQ=41.29;MQ0=0;MQRankSum=-2.683;QD=5.57;ReadPosRankSum=0.101;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:81:0,81,1106 0/1:22,8:30:99:203,0,810 0/0:28,0:28:84:0,84,1152 0/0:22,0:22:66:0,66,834 +chr18 7231240 . T C 57.30 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.764;DP=85;Dels=0.02;FS=36.687;HaplotypeScore=8.9653;MLEAC=3;MLEAF=0.375;MQ=28.48;MQ0=0;MQRankSum=-2.008;QD=0.87;ReadPosRankSum=-0.441;SB=-9.740e+00 GT:AD:DP:GQ:PL 0/1:12,1:14:11:11,0,292 0/0:15,4:19:24:0,24,302 0/1:24,4:28:49:49,0,575 0/1:18,4:22:40:40,0,255 +chr18 7232769 rs4798542 G A 37.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=6;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=18.77;MQ0=0;MQRankSum=1.026;QD=9.25;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:41,3,0 1/1:2,1:3:3:29,3,0 ./. ./. +chr18 8413804 rs640709 G A 55.27 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.123;DB;DP=62;Dels=0.02;FS=2.620;HaplotypeScore=2.4254;MLEAC=3;MLEAF=0.375;MQ=21.44;MQ0=0;MQRankSum=-2.672;QD=1.18;ReadPosRankSum=-0.444;SB=-5.565e+01 GT:AD:DP:GQ:PL 0/1:16,3:19:8:8,0,242 0/0:14,1:15:18:0,18,186 0/1:9,7:16:72:77,0,72 0/1:7,4:11:12:12,0,109 +chr18 8798235 . T C 33.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.286;DP=72;Dels=0.00;FS=5.086;HaplotypeScore=3.5881;MLEAC=1;MLEAF=0.125;MQ=23.78;MQ0=0;MQRankSum=1.580;QD=1.65;ReadPosRankSum=-0.568;SB=0.130 GT:AD:DP:GQ:PL 0/0:20,0:20:30:0,30,301 0/0:17,0:17:21:0,21,205 0/1:16,4:20:69:69,0,187 0/0:15,0:15:24:0,24,237 +chr18 8818825 . T C 67.48 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.577;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=8.4179;MLEAC=3;MLEAF=0.500;MQ=21.12;MQ0=0;MQRankSum=0.083;QD=1.69;ReadPosRankSum=1.411;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:13:13,0,79 0/1:14,2:16:35:35,0,42 0/1:10,4:14:58:58,0,89 ./. +chr18 9557378 . C G 126.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.086;DP=122;Dels=0.00;FS=4.643;HaplotypeScore=9.9150;MLEAC=3;MLEAF=0.375;MQ=29.44;MQ0=0;MQRankSum=-2.123;QD=1.50;ReadPosRankSum=0.553;SB=0.703 GT:AD:DP:GQ:PL 0/1:31,3:34:18:18,0,574 0/1:27,8:35:86:86,0,500 0/0:36,2:38:16:0,16,609 0/1:11,4:15:65:65,0,113 +chr18 9954274 . C A 90.50 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.798;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=2.0284;MLEAC=4;MLEAF=0.500;MQ=15.62;MQ0=0;MQRankSum=1.911;QD=1.31;ReadPosRankSum=1.578;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,0:28:15:0,15,118 0/1:25,6:31:66:66,0,85 0/1:24,1:25:18:18,0,45 1/1:10,2:12:6:52,6,0 +chr18 9989047 rs29047 C T 71.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.920;DB;DP=12;Dels=0.00;FS=3.090;HaplotypeScore=0.4434;MLEAC=6;MLEAF=1.00;MQ=16.28;MQ0=0;MQRankSum=1.920;QD=7.92;ReadPosRankSum=-0.956;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:31,3,0 1/1:2,1:3:3:38,3,0 1/1:3,1:4:3:37,3,0 ./. +chr18 10297414 rs11660488 A G 38.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.3670;MLEAC=4;MLEAF=1.00;MQ=20.39;MQ0=0;MQRankSum=0.736;QD=9.50;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:35,3,0 1/1:1,1:2:3:36,3,0 ./. +chr18 10468453 rs539412 C T 1866.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.653;DB;DP=248;Dels=0.00;FS=11.242;HaplotypeScore=8.1444;MLEAC=4;MLEAF=0.500;MQ=34.16;MQ0=0;MQRankSum=-5.602;QD=7.53;ReadPosRankSum=2.281;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/1:43,17:60:99:434,0,1332 0/1:41,22:63:99:603,0,1189 0/1:45,23:68:99:564,0,1451 0/1:42,14:57:99:308,0,1213 +chr18 10672719 . A T 53.29 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.562;DP=238;Dels=0.00;FS=61.742;HaplotypeScore=2.2121;MLEAC=1;MLEAF=0.125;MQ=37.50;MQ0=0;MQRankSum=-1.047;QD=0.82;ReadPosRankSum=-1.291;SB=-5.201e+00 GT:AD:DP:GQ:PL 0/0:52,4:56:6:0,6,1549 0/1:58,7:65:89:89,0,1473 0/0:70,4:74:99:0,109,2038 0/0:42,1:43:47:0,47,986 +chr18 10724578 . G C 129.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.316;DP=55;Dels=0.00;FS=2.409;HaplotypeScore=1.9660;MLEAC=4;MLEAF=0.500;MQ=18.17;MQ0=0;MQRankSum=3.145;QD=3.09;ReadPosRankSum=0.802;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,1:11:27:29,0,27 1/1:13,3:17:9:95,9,0 0/1:12,2:14:35:51,0,35 0/0:12,1:13:6:0,6,69 +chr18 10759961 rs2865118 G A 2095.59 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.062;DB;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.4916;MLEAC=7;MLEAF=0.875;MQ=30.81;MQ0=0;MQRankSum=1.075;QD=27.22;ReadPosRankSum=0.671;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:51:614,51,0 0/1:4,15:19:26:454,0,26 1/1:0,15:16:42:491,42,0 1/1:6,19:25:23:581,23,0 +chr18 11851699 . G T 378.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.594;DP=210;Dels=0.00;FS=20.258;HaplotypeScore=1.6495;MLEAC=3;MLEAF=0.375;MQ=39.53;MQ0=0;MQRankSum=-5.599;QD=2.51;ReadPosRankSum=-2.581;SB=0.114 GT:AD:DP:GQ:PL 0/1:43,7:50:99:115,0,1374 0/0:55,4:59:8:0,8,1831 0/1:54,10:64:99:173,0,1721 0/1:30,7:37:99:133,0,745 +chr18 11868561 . C T 210.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.600;DP=193;Dels=0.01;FS=87.687;HaplotypeScore=10.1439;MLEAC=3;MLEAF=0.375;MQ=36.44;MQ0=0;MQRankSum=-5.785;QD=1.30;ReadPosRankSum=2.072;SB=0.670 GT:AD:DP:GQ:PL 0/1:42,8:50:70:70,0,1291 0/1:53,9:62:14:14,0,1643 0/1:38,11:49:99:169,0,1090 0/0:30,1:31:44:0,44,1015 +chr18 12057610 . C G 144.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.508;DP=86;Dels=0.02;FS=19.271;HaplotypeScore=17.0332;MLEAC=4;MLEAF=0.500;MQ=24.71;MQ0=0;MQRankSum=0.647;QD=1.68;ReadPosRankSum=2.434;SB=-4.306e-03 GT:AD:DP:GQ:PL 0/1:17,4:21:77:77,0,345 0/1:23,3:26:32:32,0,259 0/1:16,3:19:42:42,0,183 0/1:16,2:18:36:36,0,297 +chr18 12825797 . G A 264.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.763;DP=114;Dels=0.00;FS=29.617;HaplotypeScore=0.7329;MLEAC=4;MLEAF=0.500;MQ=30.54;MQ0=0;MQRankSum=1.379;QD=2.32;ReadPosRankSum=2.244;SB=-9.652e-03 GT:AD:DP:GQ:PL 0/1:23,4:27:89:89,0,478 0/1:30,3:33:38:38,0,614 0/1:36,7:43:99:143,0,688 0/1:9,2:11:37:37,0,202 +chr18 12913240 . T G 163.61 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.361;DP=33;Dels=0.03;FS=34.992;HaplotypeScore=1.9152;MLEAC=5;MLEAF=0.625;MQ=26.22;MQ0=0;MQRankSum=0.750;QD=4.96;ReadPosRankSum=0.083;SB=1.64 GT:AD:DP:GQ:PL 0/1:8,3:11:78:78,0,162 0/1:6,1:7:23:23,0,67 0/1:7,3:10:68:77,0,68 1/1:3,1:4:3:28,3,0 +chr18 13049906 . C T 82.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.810;DP=132;Dels=0.04;FS=0.000;HaplotypeScore=4.3701;MLEAC=3;MLEAF=0.375;MQ=29.00;MQ0=0;MQRankSum=-5.410;QD=0.81;ReadPosRankSum=1.784;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,1:29:16:0,16,531 0/1:27,8:35:59:59,0,725 0/1:37,7:44:45:45,0,752 0/1:15,4:19:22:22,0,215 +chr18 13095401 rs476191 A T 438.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.718;DB;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.0866;MLEAC=4;MLEAF=0.500;MQ=32.57;MQ0=0;MQRankSum=-1.243;QD=8.28;ReadPosRankSum=1.344;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,7:19:99:182,0,329 0/1:10,5:15:99:143,0,159 0/1:9,2:11:39:39,0,289 0/1:4,4:8:79:117,0,79 +chr18 13113532 . A T 221.55 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.791;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7270;MLEAC=4;MLEAF=0.500;MQ=35.78;MQ0=0;MQRankSum=-1.500;QD=1.93;ReadPosRankSum=2.627;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,7:39:99:158,0,404 0/1:25,4:29:93:93,0,369 0/1:32,2:34:6:6,0,482 0/1:12,1:13:5:5,0,183 +chr18 13884932 . T A 114.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.845;DP=122;Dels=0.02;FS=36.853;HaplotypeScore=24.1248;MLEAC=4;MLEAF=0.500;MQ=29.56;MQ0=0;MQRankSum=-2.291;QD=0.94;ReadPosRankSum=-2.142;SB=-5.791e-02 GT:AD:DP:GQ:PL 0/1:32,3:35:19:19,0,662 0/1:24,5:29:37:37,0,555 0/1:26,5:31:48:48,0,684 0/1:20,4:24:53:53,0,346 +chr18 14124463 . A T 158.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.664;DP=195;Dels=0.01;FS=0.000;HaplotypeScore=2.4015;MLEAC=3;MLEAF=0.375;MQ=17.81;MQ0=0;MQRankSum=4.522;QD=0.88;ReadPosRankSum=-1.800;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:58,2:60:38:38,0,127 0/1:56,3:59:75:75,0,107 0/1:58,3:61:45:87,0,45 0/0:14,0:14:3:0,3,27 +chr18 14183638 rs75698625 G C 99.70 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.306;DB;DP=294;Dels=0.00;FS=2.196;HaplotypeScore=0.7427;MLEAC=5;MLEAF=0.625;MQ=7.41;MQ0=0;MQRankSum=-2.207;QD=0.34;ReadPosRankSum=4.972;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:72,8:80:3:26,3,0 0/1:65,9:74:19:26,0,19 0/1:81,4:85:19:21,0,19 0/1:42,13:55:60:69,0,60 +chr18 14221335 . C T 275.55 . AC=5;AF=0.625;AN=8;BaseQRankSum=6.851;DP=114;Dels=0.00;FS=47.937;HaplotypeScore=4.1387;MLEAC=5;MLEAF=0.625;MQ=15.90;MQ0=0;MQRankSum=-2.720;QD=2.42;ReadPosRankSum=2.115;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:14,16:30:70:70,0,144 0/1:16,14:30:50:50,0,105 0/1:25,15:40:99:105,0,161 1/1:6,8:14:9:95,9,0 +chr18 14225950 . G T 41.09 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.183;DP=146;Dels=0.00;FS=46.624;HaplotypeScore=4.3086;MLEAC=4;MLEAF=0.500;MQ=11.01;MQ0=0;MQRankSum=2.575;QD=0.28;ReadPosRankSum=1.780;SB=-8.280e-01 GT:AD:DP:GQ:PL 0/1:42,2:44:40:40,0,138 0/1:40,2:43:12:12,0,102 0/1:40,3:43:13:13,0,113 0/1:14,2:16:17:18,0,17 +chr18 18622688 . T C 498.09 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.724;DP=97;Dels=0.00;FS=8.803;HaplotypeScore=5.1839;MLEAC=5;MLEAF=0.625;MQ=31.03;MQ0=0;MQRankSum=-3.811;QD=5.13;ReadPosRankSum=3.923;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,6:29:63:63,0,498 0/1:18,7:25:99:161,0,207 0/1:22,12:34:99:202,0,400 1/1:3,6:9:12:117,12,0 +chr18 18871638 . C A 67.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.000;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9543;MLEAC=8;MLEAF=1.00;MQ=19.55;MQ0=0;MQRankSum=1.754;QD=6.70;ReadPosRankSum=1.300;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:27,3,0 1/1:2,1:3:3:23,3,0 1/1:1,1:2:3:27,3,0 1/1:1,1:2:3:26,3,0 +chr18 19088669 . C G 152.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.966;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=2.2801;MLEAC=3;MLEAF=0.375;MQ=24.15;MQ0=0;MQRankSum=0.360;QD=3.47;ReadPosRankSum=-2.604;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:45:0,45,527 0/1:11,2:13:42:42,0,174 0/1:11,5:16:99:123,0,151 0/1:11,3:14:31:31,0,155 +chr18 19140944 . C G 124.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.243;DP=94;Dels=0.00;FS=40.031;HaplotypeScore=1.4796;MLEAC=4;MLEAF=0.500;MQ=33.05;MQ0=0;MQRankSum=-4.621;QD=1.32;ReadPosRankSum=1.982;SB=-1.800e+00 GT:AD:DP:GQ:PL 0/1:23,5:28:48:48,0,635 0/1:23,2:25:2:2,0,595 0/1:25,6:31:78:78,0,752 0/1:8,2:10:37:37,0,174 +chr18 19283611 . C A 77.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.737;DP=242;Dels=0.00;FS=24.136;HaplotypeScore=6.3436;MLEAC=1;MLEAF=0.125;MQ=37.71;MQ0=0;MQRankSum=-2.639;QD=1.86;ReadPosRankSum=0.044;SB=0.086 GT:AD:DP:GQ:PL 0/0:64,1:65:99:0,142,2066 0/0:64,3:67:84:0,84,1952 0/0:66,1:68:99:0,140,2228 0/1:36,6:42:99:114,0,889 +chr18 19433165 . T C 515.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.383;DP=161;Dels=0.02;FS=55.743;HaplotypeScore=23.8202;MLEAC=4;MLEAF=0.500;MQ=29.64;MQ0=0;MQRankSum=-2.452;QD=3.20;ReadPosRankSum=3.799;SB=-1.499e-02 GT:AD:DP:GQ:PL 0/1:35,6:41:97:97,0,421 0/1:32,10:42:99:233,0,447 0/1:43,11:54:99:198,0,531 0/1:18,2:20:30:30,0,204 +chr18 19762726 . A C 75.90 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.203;DP=79;Dels=0.03;FS=12.710;HaplotypeScore=0.9534;MLEAC=4;MLEAF=0.500;MQ=28.39;MQ0=0;MQRankSum=-3.312;QD=0.96;ReadPosRankSum=-1.284;SB=-2.395e-01 GT:AD:DP:GQ:PL 0/1:13,7:20:66:66,0,292 0/1:23,3:26:23:23,0,513 0/1:22,3:25:12:12,0,413 0/1:4,2:6:17:17,0,52 +chr18 19997420 . C G 148.62 . AC=6;AF=0.750;AN=8;BaseQRankSum=-7.292;DP=225;Dels=0.00;FS=138.405;HaplotypeScore=0.6128;MLEAC=6;MLEAF=0.750;MQ=8.99;MQ0=0;MQRankSum=5.277;QD=0.66;ReadPosRankSum=4.057;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:55,11:66:25:25,0,38 1/1:58,13:71:9:109,9,0 0/1:48,8:56:22:29,0,22 1/1:29,3:32:3:29,3,0 +chr18 20602067 . A C 30.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.733;DP=102;Dels=0.00;FS=2.486;HaplotypeScore=7.7311;MLEAC=3;MLEAF=0.375;MQ=24.87;MQ0=0;MQRankSum=-0.466;QD=0.46;ReadPosRankSum=-0.022;SB=0.065 GT:AD:DP:GQ:PL 0/1:27,2:30:31:31,0,132 0/1:19,1:20:20:26,0,20 0/0:34,1:35:24:0,24,239 0/1:16,1:17:17:17,0,64 +chr18 20817276 rs12185467 G C 425.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.254;DB;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=1.8401;MLEAC=3;MLEAF=0.375;MQ=34.97;MQ0=0;MQRankSum=-3.321;QD=7.34;ReadPosRankSum=-0.563;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,7:15:99:157,0,276 0/0:17,0:17:42:0,42,570 0/1:10,6:16:99:167,0,255 0/1:19,7:26:99:145,0,607 +chr18 21043001 . A C 682.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.702;DP=189;Dels=0.00;FS=91.646;HaplotypeScore=12.3189;MLEAC=4;MLEAF=0.500;MQ=33.95;MQ0=0;MQRankSum=0.692;QD=3.61;ReadPosRankSum=-0.836;SB=-1.148e-02 GT:AD:DP:GQ:PL 0/1:37,14:51:99:295,0,708 0/1:53,7:61:99:105,0,1062 0/1:47,9:56:99:143,0,1026 0/1:13,8:21:99:182,0,266 +chr18 21043081 . T G 126.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.784;DP=66;Dels=0.02;FS=20.645;HaplotypeScore=16.1878;MLEAC=3;MLEAF=0.500;MQ=23.03;MQ0=0;MQRankSum=-2.796;QD=2.07;ReadPosRankSum=2.992;SB=0.288 GT:AD:DP:GQ:PL 0/1:13,8:21:35:35,0,118 0/1:10,6:16:81:91,0,81 0/1:16,6:23:39:39,0,173 ./. +chr18 21124945 rs1788799 C G 2052.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.736;DB;DP=168;Dels=0.00;FS=9.713;HaplotypeScore=0.9809;MLEAC=5;MLEAF=0.625;MQ=34.81;MQ0=0;MQRankSum=-3.582;QD=12.22;ReadPosRankSum=1.291;SB=-9.016e+02 GT:AD:DP:GQ:PL 1/1:7,27:34:49:935,49,0 0/1:34,14:48:99:338,0,1066 0/1:28,20:48:99:583,0,786 0/1:28,10:38:99:242,0,707 +chr18 21192261 rs1652366 G T 180.22 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.633;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=0.750;MQ=37.54;MQ0=0;MQRankSum=-1.036;QD=16.38;ReadPosRankSum=0.633;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:29:29,0,76 1/1:0,2:2:6:80,6,0 1/1:0,2:2:6:79,6,0 0/1:1,1:2:36:36,0,37 +chr18 21422447 . C A 172.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.760;DP=149;Dels=0.00;FS=45.815;HaplotypeScore=5.4664;MLEAC=3;MLEAF=0.375;MQ=32.62;MQ0=0;MQRankSum=-5.266;QD=1.66;ReadPosRankSum=3.364;SB=0.679 GT:AD:DP:GQ:PL 0/0:42,2:45:44:0,44,1162 0/1:27,4:31:20:20,0,733 0/1:35,9:44:99:138,0,884 0/1:23,6:29:58:58,0,472 +chr18 21487788 . G A 169.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.620;DP=126;Dels=0.01;FS=103.842;HaplotypeScore=27.6983;MLEAC=3;MLEAF=0.375;MQ=31.61;MQ0=0;MQRankSum=-5.191;QD=1.83;ReadPosRankSum=1.784;SB=0.816 GT:AD:DP:GQ:PL 0/0:28,4:32:25:0,25,640 0/1:25,10:35:99:101,0,483 0/1:25,7:32:32:32,0,660 0/1:20,6:26:80:80,0,356 +chr18 21488031 . C T 43.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.641;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=37.57;MQ0=0;MQRankSum=-0.262;QD=1.82;ReadPosRankSum=0.928;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:72:72,0,328 0/1:9,1:10:12:12,0,253 0/0:13,0:13:36:0,36,467 0/0:5,0:5:9:0,9,108 +chr18 21508258 . C A 64.52 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.829;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=1.5840;MLEAC=2;MLEAF=0.250;MQ=31.45;MQ0=0;MQRankSum=-1.137;QD=4.03;ReadPosRankSum=-1.604;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:15:0,15,193 0/1:10,3:13:64:64,0,183 0/0:8,1:9:1:0,1,245 0/1:1,2:3:24:40,0,24 +chr18 21644091 rs56229252 G T 364.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.115;DB;DP=126;Dels=0.02;FS=2.580;HaplotypeScore=1.6333;MLEAC=2;MLEAF=0.250;MQ=23.79;MQ0=0;MQRankSum=-2.855;QD=4.92;ReadPosRankSum=1.781;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:36,0:36:78:0,78,819 0/1:18,16:34:99:160,0,409 0/1:20,18:38:99:244,0,372 0/0:12,3:15:2:0,2,210 +chr18 21660895 . T G 66.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.020;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=2.8753;MLEAC=2;MLEAF=0.250;MQ=36.27;MQ0=0;MQRankSum=-2.943;QD=1.10;ReadPosRankSum=-2.268;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,4:33:62:62,0,688 0/0:28,0:28:66:0,66,814 0/0:27,2:29:3:0,3,627 0/1:25,3:28:45:45,0,548 +chr18 21709864 . A T 73.56 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.769;DP=25;Dels=0.04;FS=2.881;HaplotypeScore=7.1181;MLEAC=3;MLEAF=0.500;MQ=25.55;MQ0=0;MQRankSum=-0.278;QD=4.33;ReadPosRankSum=0.278;SB=-6.684e-04 GT:AD:DP:GQ:PL ./. 0/1:8,1:9:23:23,0,55 1/1:5,3:8:9:92,9,0 0/0:3,0:3:6:0,6,68 +chr18 21883650 . C T 75.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.185;DP=138;Dels=0.01;FS=30.615;HaplotypeScore=15.0190;MLEAC=3;MLEAF=0.375;MQ=28.49;MQ0=0;MQRankSum=-0.535;QD=0.76;ReadPosRankSum=2.505;SB=0.660 GT:AD:DP:GQ:PL 0/0:37,2:39:20:0,20,600 0/1:36,5:41:87:87,0,405 0/1:42,4:46:16:16,0,583 0/1:9,1:10:15:15,0,39 +chr18 21891975 rs2337961 A G 1191.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=5.033;DB;DP=184;Dels=0.00;FS=2.197;HaplotypeScore=3.4321;MLEAC=3;MLEAF=0.375;MQ=32.81;MQ0=0;MQRankSum=-2.048;QD=9.93;ReadPosRankSum=1.766;SB=-4.440e+02 GT:AD:DP:GQ:PL 0/1:26,25:51:99:717,0,615 0/0:64,0:64:99:0,174,2122 0/1:31,13:44:99:318,0,1002 0/1:17,8:25:99:200,0,347 +chr18 23632728 . C G 69.78 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.949;DP=175;Dels=0.01;FS=87.098;HaplotypeScore=16.5483;MLEAC=3;MLEAF=0.375;MQ=30.37;MQ0=0;MQRankSum=-1.434;QD=0.61;ReadPosRankSum=1.751;SB=-3.682e-02 GT:AD:DP:GQ:PL 0/1:43,3:46:8:8,0,711 0/1:41,5:46:50:50,0,779 0/0:57,3:61:19:0,19,1053 0/1:17,4:21:54:54,0,211 +chr18 24442063 . T G 32.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.606;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=4.1873;MLEAC=2;MLEAF=0.250;MQ=37.48;MQ0=0;MQRankSum=-3.982;QD=0.57;ReadPosRankSum=-2.702;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:30,2:32:54:0,54,975 0/1:30,3:33:10:10,0,846 0/0:29,2:31:30:0,30,914 0/1:21,4:25:63:63,0,610 +chr18 28581659 . C G 153.74 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.501;DP=101;Dels=0.01;FS=33.667;HaplotypeScore=16.5606;MLEAC=4;MLEAF=0.500;MQ=27.30;MQ0=0;MQRankSum=-3.382;QD=1.52;ReadPosRankSum=0.058;SB=-1.667e-01 GT:AD:DP:GQ:PL 0/1:25,4:29:14:14,0,424 0/1:23,5:28:23:23,0,349 0/1:24,11:35:99:121,0,526 0/1:6,2:8:38:38,0,107 +chr18 28720349 . C A 61.62 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.592;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.3207;MLEAC=3;MLEAF=0.375;MQ=29.76;MQ0=0;MQRankSum=-1.167;QD=1.58;ReadPosRankSum=0.584;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,3:12:39:39,0,122 0/1:11,3:14:55:55,0,148 0/1:12,1:13:8:8,0,254 0/0:2,0:2:3:0,3,27 +chr18 28986133 . A T 99.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.881;DP=166;Dels=0.00;FS=41.417;HaplotypeScore=2.2347;MLEAC=3;MLEAF=0.375;MQ=37.61;MQ0=0;MQRankSum=-4.014;QD=0.83;ReadPosRankSum=-0.156;SB=0.715 GT:AD:DP:GQ:PL 0/0:44,2:46:51:0,51,1291 0/1:32,4:36:29:29,0,1064 0/1:47,4:51:11:11,0,1249 0/1:26,6:33:99:102,0,625 +chr18 29049018 rs11660216 C T 1366.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.727;DB;DP=238;Dels=0.01;FS=5.121;HaplotypeScore=2.6041;MLEAC=3;MLEAF=0.375;MQ=38.04;MQ0=0;MQRankSum=-3.119;QD=8.33;ReadPosRankSum=2.350;SB=-2.350e+02 GT:AD:DP:GQ:PL 0/0:74,0:74:99:0,217,2788 0/1:36,18:54:99:523,0,1175 0/1:42,20:62:99:559,0,1413 0/1:34,12:46:99:328,0,1147 +chr18 29121244 . T A 258.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.356;DP=144;Dels=0.01;FS=31.845;HaplotypeScore=5.1149;MLEAC=4;MLEAF=0.500;MQ=32.33;MQ0=0;MQRankSum=-0.254;QD=1.80;ReadPosRankSum=-2.330;SB=-1.025e+00 GT:AD:DP:GQ:PL 0/1:33,3:37:5:5,0,739 0/1:36,4:42:33:33,0,630 0/1:31,7:38:99:113,0,646 0/1:19,6:25:99:149,0,320 +chr18 29543337 rs6506953 A G 1541.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.906;DB;DP=77;Dels=0.00;FS=2.113;HaplotypeScore=0.9743;MLEAC=8;MLEAF=1.00;MQ=23.65;MQ0=0;MQRankSum=2.339;QD=20.03;ReadPosRankSum=0.230;SB=-7.348e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:33:363,33,0 1/1:2,15:17:33:332,33,0 1/1:2,21:23:42:474,42,0 1/1:1,20:21:42:412,42,0 +chr18 29614262 . T G 39.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.250;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.2175;MLEAC=3;MLEAF=0.375;MQ=22.57;MQ0=0;MQRankSum=2.250;QD=0.89;ReadPosRankSum=-0.064;SB=0.894 GT:AD:DP:GQ:PL 0/1:15,2:17:38:38,0,114 0/1:15,1:16:21:21,0,65 0/1:10,1:11:21:22,0,21 0/0:7,0:7:6:0,6,46 +chr18 29770118 . G A 242.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.621;DP=239;Dels=0.01;FS=10.831;HaplotypeScore=2.1510;MLEAC=4;MLEAF=0.500;MQ=34.54;MQ0=0;MQRankSum=-6.125;QD=1.01;ReadPosRankSum=-1.532;SB=-1.358e-02 GT:AD:DP:GQ:PL 0/1:69,10:80:91:91,0,1525 0/1:55,9:64:33:33,0,1547 0/1:71,10:81:99:112,0,1737 0/1:10,2:12:49:49,0,186 +chr18 30349734 . A C 32.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.719;DP=83;Dels=0.00;FS=7.363;HaplotypeScore=2.6741;MLEAC=2;MLEAF=0.250;MQ=29.06;MQ0=0;MQRankSum=0.962;QD=0.78;ReadPosRankSum=-0.789;SB=-1.052e-02 GT:AD:DP:GQ:PL 0/1:18,2:20:20:20,0,290 0/0:27,1:28:29:0,29,679 0/0:13,0:13:15:0,15,156 0/1:19,3:22:54:54,0,146 +chr18 30359199 . A C 35.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.567;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=3.8495;MLEAC=4;MLEAF=0.500;MQ=25.96;MQ0=0;MQRankSum=1.209;QD=1.06;ReadPosRankSum=2.105;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:16:26,0,16 0/1:6,1:8:21:21,0,60 0/1:9,1:10:15:15,0,57 0/1:8,1:9:16:16,0,78 +chr18 31323157 . A T 136.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.906;DP=172;Dels=0.00;FS=35.050;HaplotypeScore=6.4839;MLEAC=3;MLEAF=0.375;MQ=32.44;MQ0=0;MQRankSum=1.017;QD=1.03;ReadPosRankSum=4.312;SB=-3.694e-02 GT:AD:DP:GQ:PL 0/0:39,0:39:54:0,54,670 0/1:48,5:53:40:40,0,853 0/1:37,3:40:24:24,0,570 0/1:34,6:40:99:116,0,690 +chr18 32401457 . G C 134.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.459;DP=70;Dels=0.00;FS=29.283;HaplotypeScore=5.2169;MLEAC=4;MLEAF=0.500;MQ=28.73;MQ0=0;MQRankSum=-0.368;QD=1.92;ReadPosRankSum=-0.866;SB=-1.250e+01 GT:AD:DP:GQ:PL 0/1:12,1:13:8:8,0,175 0/1:20,2:22:36:36,0,313 0/1:17,3:20:64:64,0,326 0/1:10,4:15:68:68,0,90 +chr18 34349333 . C T 81.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.515;DP=166;Dels=0.00;FS=17.220;HaplotypeScore=4.1430;MLEAC=3;MLEAF=0.375;MQ=34.89;MQ0=0;MQRankSum=-1.570;QD=0.60;ReadPosRankSum=1.138;SB=2.51 GT:AD:DP:GQ:PL 0/1:49,5:54:66:66,0,1057 0/1:32,3:35:39:39,0,603 0/1:42,4:46:19:19,0,963 0/0:30,1:31:11:0,11,453 +chr18 34415366 . T G 546.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.797;DP=203;Dels=0.00;FS=2.335;HaplotypeScore=12.4539;MLEAC=4;MLEAF=0.500;MQ=21.54;MQ0=0;MQRankSum=5.547;QD=2.69;ReadPosRankSum=1.413;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:52,12:64:99:296,0,293 0/1:54,9:63:99:201,0,291 0/1:53,6:60:72:72,0,195 0/1:13,3:16:20:20,0,98 +chr18 34855104 . A C 60.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.949;DP=76;Dels=0.00;FS=10.315;HaplotypeScore=6.1889;MLEAC=3;MLEAF=0.375;MQ=29.15;MQ0=0;MQRankSum=-4.257;QD=1.07;ReadPosRankSum=-1.412;SB=-9.798e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:33:0,33,390 0/1:16,3:19:42:42,0,213 0/1:16,3:19:14:14,0,315 0/1:13,5:18:47:47,0,119 +chr18 36914853 rs8088031 C T 236.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.469;DB;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=11.15;MQ0=0;MQRankSum=2.847;QD=4.84;ReadPosRankSum=0.255;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:16,8:24:9:107,9,0 0/1:14,11:25:33:176,0,33 0/0:27,0:27:9:0,9,74 0/0:25,0:25:12:0,12,113 +chr18 38533890 . T A 31.77 . AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.13;MQ0=0;QD=10.59;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:1,2:3:6:63,6,0 +chr18 39618779 . C A 30.52 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.823;DP=64;Dels=0.03;FS=16.146;HaplotypeScore=14.2637;MLEAC=2;MLEAF=0.250;MQ=25.38;MQ0=0;MQRankSum=0.457;QD=0.74;ReadPosRankSum=-0.320;SB=-3.030e+01 GT:AD:DP:GQ:PL 0/0:14,0:14:15:0,15,171 0/1:13,3:16:54:57,0,54 0/1:22,2:24:13:13,0,279 0/0:8,0:8:3:0,3,26 +chr18 43497609 . A C 42.13 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.599;DP=151;Dels=0.03;FS=11.913;HaplotypeScore=13.3506;MLEAC=2;MLEAF=0.250;MQ=34.12;MQ0=0;MQRankSum=-2.427;QD=0.71;ReadPosRankSum=0.057;SB=0.775 GT:AD:DP:GQ:PL 0/0:43,3:47:24:0,24,1221 0/1:42,5:47:69:69,0,931 0/0:40,2:42:32:0,32,916 0/1:9,1:10:14:14,0,210 +chr18 43519648 . G A 66.71 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.109;DP=131;Dels=0.00;FS=28.679;HaplotypeScore=3.4701;MLEAC=2;MLEAF=0.250;MQ=32.79;MQ0=0;MQRankSum=0.767;QD=1.04;ReadPosRankSum=-0.574;SB=-5.275e-01 GT:AD:DP:GQ:PL 0/0:34,2:36:13:0,13,891 0/0:30,1:31:24:0,24,532 0/1:40,4:44:42:42,0,705 0/1:17,3:20:66:66,0,287 +chr18 43526580 . A C 35.40 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.616;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=10.5544;MLEAC=2;MLEAF=0.250;MQ=30.35;MQ0=0;MQRankSum=-4.409;QD=0.80;ReadPosRankSum=3.326;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,2:30:22:0,22,557 0/1:18,3:21:14:14,0,346 0/1:17,5:23:62:62,0,299 0/0:18,1:20:10:0,10,304 +chr18 44109115 rs59252058 G A 67.41 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.246;DB;DP=19;Dels=0.00;FS=2.963;HaplotypeScore=2.7840;MLEAC=4;MLEAF=0.667;MQ=20.50;MQ0=0;MQRankSum=0.678;QD=4.81;ReadPosRankSum=0.278;SB=-2.928e+01 GT:AD:DP:GQ:PL 1/1:0,1:1:3:32,3,0 ./. 0/1:5,1:6:14:14,0,66 0/1:5,2:7:26:60,0,26 +chr18 44126883 . G A 39.20 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.536;DP=43;Dels=0.00;FS=34.080;HaplotypeScore=3.5670;MLEAC=2;MLEAF=0.250;MQ=27.35;MQ0=0;MQRankSum=-2.437;QD=1.63;ReadPosRankSum=0.414;SB=-2.226e+00 GT:AD:DP:GQ:PL 0/1:10,5:15:36:36,0,135 0/0:7,0:7:15:0,15,179 0/0:11,1:12:7:0,7,291 0/1:5,4:9:44:44,0,131 +chr18 44135138 . C G 53.60 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.199;DP=80;Dels=0.00;FS=4.999;HaplotypeScore=7.9910;MLEAC=3;MLEAF=0.375;MQ=24.05;MQ0=0;MQRankSum=-2.526;QD=0.86;ReadPosRankSum=2.715;SB=0.909 GT:AD:DP:GQ:PL 0/1:16,1:17:1:1,0,233 0/1:22,3:26:9:9,0,211 0/0:13,4:18:4:0,4,217 0/1:13,6:19:81:81,0,185 +chr18 44149474 rs2086005 G A 1958.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.952;DB;DP=262;Dels=0.00;FS=2.380;HaplotypeScore=1.4799;MLEAC=3;MLEAF=0.375;MQ=33.35;MQ0=0;MQRankSum=-4.098;QD=10.47;ReadPosRankSum=1.112;SB=-9.750e+02 GT:AD:DP:GQ:PL 0/0:75,0:75:99:0,210,2540 0/1:35,29:65:99:798,0,795 0/1:44,25:69:99:621,0,960 0/1:32,21:53:99:583,0,800 +chr18 44639361 . G T 373.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.823;DP=103;Dels=0.04;FS=5.363;HaplotypeScore=6.4169;MLEAC=4;MLEAF=0.500;MQ=27.09;MQ0=0;MQRankSum=-1.623;QD=3.63;ReadPosRankSum=-0.494;SB=-3.878e-02 GT:AD:DP:GQ:PL 0/1:16,9:25:99:199,0,105 0/1:24,5:29:99:106,0,244 0/1:26,2:29:20:20,0,254 0/1:12,4:16:91:91,0,180 +chr18 46090321 . A G 61.25 . AC=6;AF=1.00;AN=6;BaseQRankSum=1.517;DP=13;Dels=0.00;FS=3.332;HaplotypeScore=0.3856;MLEAC=6;MLEAF=1.00;MQ=14.17;MQ0=0;MQRankSum=1.920;QD=6.13;ReadPosRankSum=-0.956;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,1:3:3:33,3,0 1/1:2,1:3:3:33,3,0 1/1:3,1:4:3:30,3,0 +chr18 46468891 . T A 222.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.306;DP=253;Dels=0.00;FS=43.259;HaplotypeScore=5.2212;MLEAC=2;MLEAF=0.250;MQ=33.42;MQ0=0;MQRankSum=-1.836;QD=1.92;ReadPosRankSum=2.338;SB=-1.890e-01 GT:AD:DP:GQ:PL 0/1:58,12:70:99:171,0,1514 0/0:66,4:70:52:0,52,1645 0/0:63,3:67:11:0,11,1134 0/1:40,6:46:93:93,0,922 +chr18 47014953 rs35737964 G GTGT 2417.53 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.367;DB;DP=78;FS=0.000;HaplotypeScore=5.0555;MLEAC=7;MLEAF=0.875;MQ=25.70;MQ0=0;MQRankSum=-4.442;QD=30.99;RPA=1,2;RU=TGT;ReadPosRankSum=1.236;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:3,19:15:45:847,45,0 0/1:11,8:12:99:198,0,418 1/1:4,19:19:23:958,23,0 1/1:2,9:8:24:468,24,0 +chr18 47017727 . T G 2541.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.700;DP=399;Dels=0.00;FS=603.466;HaplotypeScore=15.3000;MLEAC=4;MLEAF=0.500;MQ=30.27;MQ0=0;MQRankSum=-5.375;QD=6.37;ReadPosRankSum=4.807;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:72,46:118:99:714,0,1603 0/1:81,40:121:99:569,0,2020 0/1:70,54:124:99:1045,0,1622 0/1:23,12:35:99:256,0,416 +chr18 47101823 . T A 148.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.748;DP=108;Dels=0.01;FS=104.084;HaplotypeScore=9.9163;MLEAC=4;MLEAF=0.500;MQ=36.89;MQ0=0;MQRankSum=-3.918;QD=1.76;ReadPosRankSum=-0.558;SB=-4.715e+00 GT:AD:DP:GQ:PL 0/1:23,4:27:62:62,0,491 0/1:22,2:24:24:24,0,474 0/0:21,3:24:0:0,0,249 0/1:26,6:32:99:102,0,389 +chr18 47113242 rs116888584 G A 733.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.380;DB;DP=127;Dels=0.01;FS=2.416;HaplotypeScore=2.7081;MLEAC=3;MLEAF=0.375;MQ=32.75;MQ0=0;MQRankSum=-2.219;QD=8.43;ReadPosRankSum=0.104;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,10:22:99:250,0,339 0/0:40,0:40:99:0,102,1224 0/1:27,11:38:99:251,0,781 0/1:14,12:26:99:276,0,362 +chr18 47177517 rs62100627 G A 33.17 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.212;DB;DP=43;Dels=0.02;FS=10.242;HaplotypeScore=3.2116;MLEAC=1;MLEAF=0.125;MQ=30.77;MQ0=0;MQRankSum=-1.485;QD=3.69;ReadPosRankSum=0.306;SB=-1.144e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:56:69,0,56 0/0:8,0:8:9:0,9,111 0/0:16,1:17:42:0,42,514 0/0:8,1:9:18:0,18,214 +chr18 47291286 rs1790486 G A 76.03 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.754;DB;DP=14;Dels=0.00;FS=2.632;HaplotypeScore=0.8413;MLEAC=5;MLEAF=0.833;MQ=19.02;MQ0=0;MQRankSum=1.754;QD=12.67;ReadPosRankSum=0.937;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:82,6,0 0/0:3,0:3:3:0,3,25 ./. 1/1:1,1:2:3:33,3,0 +chr18 47480898 rs1557359 T C 706.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.854;DB;DP=76;Dels=0.01;FS=5.390;HaplotypeScore=1.7144;MLEAC=4;MLEAF=0.500;MQ=34.92;MQ0=0;MQRankSum=-0.597;QD=9.30;ReadPosRankSum=-0.212;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,8:28:99:269,0,443 0/1:11,8:19:99:252,0,355 0/1:11,6:17:99:184,0,272 0/1:9,2:11:44:44,0,287 +chr18 47795900 . G A 205.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.513;DP=64;Dels=0.00;FS=13.726;HaplotypeScore=11.6089;MLEAC=3;MLEAF=0.375;MQ=28.09;MQ0=0;MQRankSum=1.659;QD=4.19;ReadPosRankSum=-0.464;SB=0.521 GT:AD:DP:GQ:PL 0/1:10,4:14:55:55,0,229 0/1:15,2:17:49:49,0,158 0/1:11,6:18:99:144,0,163 0/0:14,1:15:9:0,9,95 +chr18 47795901 . G A 86.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.036;DP=62;Dels=0.02;FS=4.831;HaplotypeScore=12.0503;MLEAC=4;MLEAF=0.500;MQ=28.23;MQ0=0;MQRankSum=0.865;QD=1.92;ReadPosRankSum=-0.723;SB=-2.220e+00 GT:AD:DP:GQ:PL 0/1:10,3:13:26:26,0,241 0/1:15,2:17:39:39,0,209 0/0:15,2:17:0:0,0,313 0/1:12,2:14:61:61,0,62 +chr18 47795948 . T C 31.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.301;DP=55;Dels=0.04;FS=12.411;HaplotypeScore=9.7545;MLEAC=2;MLEAF=0.250;MQ=22.35;MQ0=0;MQRankSum=-1.236;QD=1.22;ReadPosRankSum=1.102;SB=21.30 GT:AD:DP:GQ:PL 1/1:9,3:13:6:54,6,0 0/0:16,1:17:15:0,15,183 0/0:10,0:11:6:0,6,83 1/1:8,3:12:3:23,3,0 +chr18 48333077 . G T 169.11 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.201;DP=202;Dels=0.05;FS=191.139;HaplotypeScore=13.1844;MLEAC=1;MLEAF=0.125;MQ=37.40;MQ0=0;MQRankSum=-6.785;QD=2.77;ReadPosRankSum=1.350;SB=-6.409e+00 GT:AD:DP:GQ:PL 0/0:37,4:41:10:0,10,1218 0/1:43,13:56:99:205,0,1381 0/0:47,5:52:54:0,54,1491 0/0:38,5:43:35:0,35,1340 +chr18 48333367 rs2255672 T C 67.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.180;DB;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=25.13;MQ0=0;MQRankSum=-0.600;QD=5.60;ReadPosRankSum=0.289;SB=-2.602e+01 GT:AD:DP:GQ:PL 0/1:2,2:4:56:56,0,63 0/0:3,0:3:6:0,6,80 0/1:5,1:6:22:22,0,33 1/1:1,1:2:3:32,3,0 +chr18 48341063 rs11082851 G A 380.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.331;DB;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7439;MLEAC=3;MLEAF=0.375;MQ=30.51;MQ0=0;MQRankSum=-3.517;QD=15.84;ReadPosRankSum=0.856;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:24:0,24,298 1/1:0,11:11:24:249,24,0 0/1:6,7:13:99:180,0,147 0/0:4,1:5:12:0,12,144 +chr18 48703283 . A C 170.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=-8.511;DP=501;Dels=0.00;FS=340.477;HaplotypeScore=7.9990;MLEAC=4;MLEAF=0.500;MQ=38.74;MQ0=0;MQRankSum=-9.787;QD=0.34;ReadPosRankSum=2.849;SB=-1.847e+00 GT:AD:DP:GQ:PL 0/1:122,12:134:2:2,0,4327 0/1:115,16:131:66:66,0,4049 0/1:119,14:133:96:96,0,3789 0/1:90,13:103:47:47,0,3056 +chr18 50432583 . T G 40.85 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.339;DP=170;Dels=0.00;FS=65.238;HaplotypeScore=5.1093;MLEAC=2;MLEAF=0.250;MQ=33.86;MQ0=0;MQRankSum=-1.113;QD=0.50;ReadPosRankSum=2.646;SB=-2.935e+00 GT:AD:DP:GQ:PL 0/0:44,3:47:32:0,32,1292 0/1:38,4:43:7:7,0,874 0/0:39,3:42:41:0,41,940 0/1:31,6:38:73:73,0,706 +chr18 52555398 rs4343367 G A 9882.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.109;DB;DP=290;Dels=0.00;FS=57.292;HaplotypeScore=0.9944;MLEAC=8;MLEAF=1.00;MQ=34.13;MQ0=0;MQRankSum=3.274;QD=34.08;ReadPosRankSum=3.698;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,70:75:99:2556,153,0 1/1:7,67:74:99:2379,195,0 1/1:3,74:77:99:2767,189,0 1/1:3,61:64:99:2180,150,0 +chr18 52942827 rs1788027 G A 3118.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.785;DB;DP=156;Dels=0.00;FS=2.326;HaplotypeScore=0.7415;MLEAC=5;MLEAF=0.625;MQ=40.49;MQ0=0;MQRankSum=1.121;QD=19.99;ReadPosRankSum=1.206;SB=-2.470e+02 GT:AD:DP:GQ:PL 0/1:27,19:46:99:620,0,941 1/1:0,33:33:99:1381,99,0 0/1:26,23:49:99:826,0,781 0/1:18,10:28:99:337,0,660 +chr18 53131488 rs3760600 C A 251.77 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.733;DB;DP=13;Dels=0.00;FS=6.990;HaplotypeScore=0.4338;MLEAC=8;MLEAF=1.00;MQ=32.70;MQ0=0;MQRankSum=0.480;QD=19.37;ReadPosRankSum=0.480;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:38,3,0 1/1:2,2:4:6:74,6,0 1/1:1,4:5:12:135,12,0 1/1:0,1:1:3:42,3,0 +chr18 54270230 . A T 52.71 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.127;DP=100;Dels=0.00;FS=2.214;HaplotypeScore=0.2498;MLEAC=3;MLEAF=0.375;MQ=39.11;MQ0=0;MQRankSum=-1.157;QD=0.68;ReadPosRankSum=-0.890;SB=-9.433e-01 GT:AD:DP:GQ:PL 0/0:22,1:23:19:0,19,576 0/1:34,4:38:72:72,0,588 0/1:30,3:33:17:17,0,651 0/1:5,1:6:5:5,0,156 +chr18 54346510 rs597585 G A 1007.24 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.945;DB;DP=50;Dels=0.02;FS=26.372;HaplotypeScore=0.2367;MLEAC=8;MLEAF=1.00;MQ=24.31;MQ0=0;MQRankSum=3.853;QD=20.14;ReadPosRankSum=2.080;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,13:16:11:310,11,0 1/1:4,12:16:27:312,27,0 1/1:2,11:13:33:325,33,0 1/1:1,3:4:9:99,9,0 +chr18 54354239 rs576095 T C 1487.02 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.289;DB;DP=50;Dels=0.00;FS=8.944;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=32.12;MQ0=0;MQRankSum=2.343;QD=29.74;ReadPosRankSum=0.027;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:42:498,42,0 1/1:2,14:16:42:516,42,0 1/1:1,11:12:30:361,30,0 1/1:2,5:7:15:151,15,0 +chr18 54814730 rs58215084 G A 106.04 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.942;DB;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.2458;MLEAC=1;MLEAF=0.125;MQ=28.14;MQ0=0;MQRankSum=-0.242;QD=10.60;ReadPosRankSum=0.404;SB=7.792e-03 GT:AD:DP:GQ:PL 0/1:4,6:10:48:142,0,48 0/0:8,0:8:21:0,21,226 0/0:6,0:6:18:0,18,179 0/0:6,0:6:18:0,18,214 +chr18 55274308 . G C 168.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.867;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=4.8987;MLEAC=4;MLEAF=0.500;MQ=30.17;MQ0=0;MQRankSum=-0.930;QD=1.20;ReadPosRankSum=2.824;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,4:33:65:65,0,497 0/1:30,6:36:72:72,0,656 0/1:37,5:42:47:47,0,615 0/1:26,2:28:27:27,0,413 +chr18 55288879 rs368935 A G 710.20 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.740;DB;DP=34;Dels=0.00;FS=13.451;HaplotypeScore=1.7009;MLEAC=8;MLEAF=1.00;MQ=27.73;MQ0=0;MQRankSum=1.543;QD=20.89;ReadPosRankSum=2.856;SB=-4.201e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:171,15,0 1/1:5,8:13:18:198,18,0 1/1:3,8:11:24:289,24,0 1/1:2,3:5:9:91,9,0 +chr18 55335759 . G C 50.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.859;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=1;MLEAF=0.125;MQ=32.52;MQ0=0;MQRankSum=-3.534;QD=1.21;ReadPosRankSum=4.360;SB=-3.388e+00 GT:AD:DP:GQ:PL 0/0:25,0:26:45:0,45,566 0/1:23,5:29:85:85,0,479 0/0:27,2:30:7:0,7,336 0/1:12,1:13:1:1,0,299 +chr18 55947723 rs7233436 C T 47.77 . AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=23.88;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:0,2:2:6:79,6,0 +chr18 56204387 rs67804623 ACAGTTGATGTGTCCT A 5897 . AC=5;AF=0.625;AN=8;BaseQRankSum=5.065;DB;DP=159;FS=18.120;HaplotypeScore=98.3290;MLEAC=5;MLEAF=0.625;MQ=30.47;MQ0=0;MQRankSum=-6.272;QD=37.09;ReadPosRankSum=3.022;SB=-2.116e+03 GT:AD:DP:GQ:PL 0/1:51,2:53:99:160,0,5710 0/1:17,16:29:30:2075,0,30 1/1:20,15:30:51:1784,51,0 0/1:17,17:24:48:1878,0,48 +chr18 57115203 rs1893788 T C 789.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.313;DB;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8320;MLEAC=4;MLEAF=0.500;MQ=28.47;MQ0=0;MQRankSum=-2.957;QD=9.51;ReadPosRankSum=0.263;SB=-1.857e+02 GT:AD:DP:GQ:PL 0/0:24,0:24:48:0,48,583 1/1:8,16:25:14:416,14,0 0/1:22,10:32:99:237,0,380 0/1:19,7:26:99:184,0,319 +chr18 57429076 . C A 53.47 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.307;DP=251;Dels=0.00;FS=29.234;HaplotypeScore=1.1687;MLEAC=2;MLEAF=0.250;MQ=13.52;MQ0=0;MQRankSum=1.793;QD=0.41;ReadPosRankSum=1.314;SB=-5.214e-03 GT:AD:DP:GQ:PL 0/0:56,2:58:24:0,24,221 0/1:61,1:62:4:4,0,135 0/0:63,0:63:12:0,12,97 0/1:60,8:68:87:87,0,210 +chr18 57477991 rs4940906 C T 50.77 . AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=25.38;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,2:2:6:82,6,0 ./. +chr18 58187148 rs881474 G A 54.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.539;DB;DP=32;Dels=0.00;FS=1.422;HaplotypeScore=0.2447;MLEAC=2;MLEAF=0.250;MQ=23.37;MQ0=0;MQRankSum=-1.428;QD=3.18;ReadPosRankSum=1.825;SB=-2.540e+01 GT:AD:DP:GQ:PL 0/1:5,4:9:32:32,0,92 0/0:9,0:9:15:0,15,159 0/1:4,4:8:48:63,0,48 0/0:3,3:6:9:0,9,93 +chr18 59217341 . A C 98.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.554;DP=106;Dels=0.00;FS=24.348;HaplotypeScore=3.5288;MLEAC=3;MLEAF=0.375;MQ=32.38;MQ0=0;MQRankSum=-2.687;QD=1.19;ReadPosRankSum=-1.055;SB=-3.064e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:67:67,0,437 0/1:24,4:28:25:25,0,551 0/1:28,5:33:50:50,0,706 0/0:21,1:23:45:0,45,530 +chr18 59285628 rs11877757 C G 67.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.801;DB;DP=63;Dels=0.00;FS=7.291;HaplotypeScore=0.2500;MLEAC=2;MLEAF=0.250;MQ=34.24;MQ0=0;MQRankSum=-1.112;QD=2.51;ReadPosRankSum=-0.823;SB=-3.628e+01 GT:AD:DP:GQ:PL 0/1:12,4:16:21:21,0,206 0/1:8,3:11:88:88,0,193 0/0:23,0:23:48:0,48,620 0/0:13,0:13:30:0,30,365 +chr18 59780309 . G A 137.40 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.977;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.7012;MLEAC=5;MLEAF=0.625;MQ=31.22;MQ0=0;MQRankSum=-0.261;QD=3.05;ReadPosRankSum=1.306;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:42:42,0,129 0/1:15,2:17:49:49,0,105 1/1:7,2:9:6:72,6,0 0/1:3,1:4:18:18,0,22 +chr18 60242795 rs76880909 A C 2200.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.982;DB;DP=280;Dels=0.00;FS=11.366;HaplotypeScore=1.5330;MLEAC=3;MLEAF=0.375;MQ=39.74;MQ0=0;MQRankSum=-8.301;QD=11.00;ReadPosRankSum=4.058;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:44,29:73:99:921,0,1544 0/0:80,0:80:99:0,238,3251 0/1:48,27:75:99:764,0,1558 0/1:33,19:52:99:559,0,1015 +chr18 60645818 rs62100048 C A 52.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.115;DB;DP=57;Dels=0.00;FS=12.454;HaplotypeScore=5.6911;MLEAC=2;MLEAF=0.250;MQ=22.14;MQ0=0;MQRankSum=0.959;QD=1.86;ReadPosRankSum=1.737;SB=1.50 GT:AD:DP:GQ:PL 0/1:14,3:17:54:54,0,93 0/0:12,1:14:12:0,12,119 0/0:15,0:15:9:0,9,90 0/1:9,2:11:39:39,0,52 +chr18 61002537 . T G 282.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.127;DP=181;Dels=0.03;FS=193.776;HaplotypeScore=18.2469;MLEAC=4;MLEAF=0.500;MQ=37.14;MQ0=0;MQRankSum=-7.111;QD=1.56;ReadPosRankSum=4.356;SB=8.706e-03 GT:AD:DP:GQ:PL 0/1:37,6:43:59:59,0,1094 0/1:44,8:52:52:52,0,1185 0/1:36,10:46:99:152,0,973 0/1:28,6:34:62:62,0,738 +chr18 61170925 rs8093128 T C 3648.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.897;DB;DP=120;Dels=0.00;FS=9.719;HaplotypeScore=2.5656;MLEAC=8;MLEAF=1.00;MQ=31.95;MQ0=0;MQRankSum=1.161;QD=30.40;ReadPosRankSum=2.576;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:5,29:34:84:986,84,0 1/1:4,22:26:35:759,35,0 1/1:3,32:36:93:1172,93,0 1/1:3,21:24:63:731,63,0 +chr18 61465810 rs1720858 A G 110.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.457;DB;DP=86;Dels=0.00;FS=5.573;HaplotypeScore=1.0135;MLEAC=3;MLEAF=0.375;MQ=17.12;MQ0=0;MQRankSum=-1.217;QD=1.54;ReadPosRankSum=-0.528;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,7:19:26:37,0,26 0/1:15,10:25:74:74,0,167 0/1:20,8:28:41:41,0,222 0/0:9,5:14:3:0,3,25 +chr18 61562371 rs7233370 T C 179.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.172;DB;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=0.7887;MLEAC=3;MLEAF=0.375;MQ=35.82;MQ0=0;MQRankSum=-2.266;QD=6.42;ReadPosRankSum=1.751;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:12:45:45,0,307 0/0:12,0:12:33:0,33,436 0/1:6,2:8:54:54,0,184 0/1:2,5:7:28:124,0,28 +chr18 61575232 rs1006961 A G 319.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.083;DB;DP=51;Dels=0.04;FS=8.078;HaplotypeScore=6.3700;MLEAC=3;MLEAF=0.375;MQ=31.74;MQ0=0;MQRankSum=-0.272;QD=9.69;ReadPosRankSum=-1.017;SB=0.011 GT:AD:DP:GQ:PL 0/1:6,5:12:67:145,0,67 0/0:15,0:17:33:0,33,390 0/1:10,6:16:99:177,0,215 1/1:3,1:4:3:42,3,0 +chr18 64176393 . C A 79.56 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.472;DP=188;Dels=0.01;FS=26.943;HaplotypeScore=4.1571;MLEAC=1;MLEAF=0.125;MQ=34.82;MQ0=0;MQRankSum=-0.804;QD=2.27;ReadPosRankSum=-1.522;SB=-6.975e+00 GT:AD:DP:GQ:PL 0/0:44,2:46:12:0,12,815 0/0:46,3:50:4:0,4,981 0/0:53,3:56:20:0,20,1214 0/1:30,5:35:99:115,0,524 +chr18 65945455 . T G 89.69 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.075;DP=65;Dels=0.00;FS=33.847;HaplotypeScore=2.1896;MLEAC=5;MLEAF=0.625;MQ=18.26;MQ0=0;MQRankSum=1.205;QD=1.38;ReadPosRankSum=1.093;SB=-2.127e+00 GT:AD:DP:GQ:PL 0/1:12,2:15:7:7,0,98 0/1:12,3:15:63:63,0,121 0/1:26,1:27:1:1,0,267 1/1:5,3:8:6:60,6,0 +chr18 66355061 rs117919783 T C 514.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.152;DB;DP=119;Dels=0.00;FS=5.483;HaplotypeScore=0.4988;MLEAC=1;MLEAF=0.125;MQ=38.67;MQ0=0;MQRankSum=-4.360;QD=15.61;ReadPosRankSum=-1.344;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:37,1:38:99:0,111,1477 0/1:16,17:33:99:551,0,497 0/0:37,0:37:99:0,102,1356 0/0:11,0:11:33:0,33,427 +chr18 67672561 . C T 258.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.599;DP=62;Dels=0.02;FS=3.802;HaplotypeScore=13.9213;MLEAC=4;MLEAF=0.500;MQ=24.90;MQ0=0;MQRankSum=-2.407;QD=4.18;ReadPosRankSum=2.567;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,8:14:9:133,0,9 0/1:11,5:16:49:49,0,87 0/1:18,5:23:51:51,0,119 0/1:5,3:8:27:68,0,27 +chr18 70205949 . C G 170.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.026;DP=196;Dels=0.00;FS=46.528;HaplotypeScore=0.9990;MLEAC=4;MLEAF=0.500;MQ=39.16;MQ0=0;MQRankSum=-0.561;QD=0.87;ReadPosRankSum=-2.521;SB=-5.772e-02 GT:AD:DP:GQ:PL 0/1:46,6:52:94:94,0,1280 0/1:51,4:55:19:19,0,1392 0/1:64,6:71:62:62,0,1803 0/1:16,2:18:38:38,0,442 +chr18 72245594 . T A 76.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.017;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.4162;MLEAC=2;MLEAF=0.250;MQ=37.75;MQ0=0;MQRankSum=-0.276;QD=1.08;ReadPosRankSum=-1.378;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,3:35:69:69,0,285 0/0:33,0:33:33:0,33,341 0/1:33,3:36:49:49,0,391 0/0:26,0:26:45:0,45,468 +chr18 72343008 rs7243081 T C 8122.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.168;DB;DP=245;Dels=0.00;FS=1.283;HaplotypeScore=4.4755;MLEAC=8;MLEAF=1.00;MQ=34.81;MQ0=0;MQRankSum=0.280;QD=33.15;ReadPosRankSum=3.410;SB=-3.430e+03 GT:AD:DP:GQ:PL 1/1:4,69:73:99:2440,129,0 1/1:5,63:68:99:2365,186,0 1/1:6,73:79:79:2581,79,0 1/1:3,22:25:4:736,4,0 +chr18 72632590 . C A 77 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.655;DP=195;Dels=0.01;FS=79.943;HaplotypeScore=20.9005;MLEAC=1;MLEAF=0.125;MQ=27.59;MQ0=0;MQRankSum=-3.163;QD=1.67;ReadPosRankSum=2.810;SB=-6.004e+00 GT:AD:DP:GQ:PL 0/1:38,8:46:99:113,0,577 0/0:47,1:48:46:0,46,702 0/0:54,5:60:22:0,22,943 0/0:39,1:40:66:0,66,780 +chr18 72997582 . T C 85.13 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.395;DP=92;Dels=0.00;FS=12.865;HaplotypeScore=11.6181;MLEAC=2;MLEAF=0.250;MQ=25.93;MQ0=0;MQRankSum=0.913;QD=1.77;ReadPosRankSum=0.259;SB=2.17 GT:AD:DP:GQ:PL 0/0:27,0:27:27:0,27,298 0/1:18,2:20:18:18,0,96 0/1:23,5:28:99:108,0,199 0/0:16,1:17:9:0,9,90 +chr18 72998328 . C G 33.34 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.606;DP=141;Dels=0.01;FS=30.817;HaplotypeScore=11.1594;MLEAC=2;MLEAF=0.250;MQ=31.02;MQ0=0;MQRankSum=0.725;QD=0.46;ReadPosRankSum=-0.065;SB=-2.875e+00 GT:AD:DP:GQ:PL 0/0:29,0:29:57:0,57,689 0/1:36,4:40:67:67,0,554 0/0:37,1:38:58:0,58,930 0/1:30,3:33:4:4,0,563 +chr18 73139418 . T A 84.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-5.124;DP=212;Dels=0.02;FS=23.312;HaplotypeScore=3.6498;MLEAC=1;MLEAF=0.125;MQ=36.13;MQ0=0;MQRankSum=-2.372;QD=1.56;ReadPosRankSum=-1.740;SB=-5.333e+00 GT:AD:DP:GQ:PL 0/1:46,8:54:99:120,0,1346 0/0:61,2:63:88:0,88,1804 0/0:58,1:59:89:0,89,1554 0/0:30,2:32:16:0,16,970 +chr18 74780980 . T A 69.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.869;DP=63;Dels=0.00;FS=7.854;HaplotypeScore=0.4955;MLEAC=3;MLEAF=0.375;MQ=35.01;MQ0=0;MQRankSum=2.669;QD=1.52;ReadPosRankSum=-2.059;SB=0.452 GT:AD:DP:GQ:PL 0/1:16,2:18:17:17,0,447 0/1:14,2:16:43:43,0,175 0/0:17,0:17:24:0,24,293 0/1:10,2:12:53:53,0,151 +chr18 75148016 rs1942596 G A 680.21 . AC=8;AF=1.00;AN=8;DB;DP=40;Dels=0.05;FS=0.000;HaplotypeScore=0.6246;MLEAC=8;MLEAF=1.00;MQ=23.06;MQ0=0;QD=17.01;SB=-2.804e+02 GT:AD:DP:GQ:PL 1/1:0,9:9:15:159,15,0 1/1:0,11:11:18:210,18,0 1/1:0,15:15:21:248,21,0 1/1:0,3:3:9:102,9,0 +chr18 75700562 rs12955859 G A 41.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.76;MQ0=0;MQRankSum=0.736;QD=13.92;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:73,6,0 ./. ./. ./. +chr18 77096582 . A C 97.74 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.122;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=7.3690;MLEAC=5;MLEAF=0.625;MQ=17.20;MQ0=0;MQRankSum=0.342;QD=3.91;ReadPosRankSum=0.146;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,1:4:3:25,3,0 0/1:2,3:5:19:19,0,21 0/1:4,1:5:17:20,0,17 0/1:5,5:10:38:76,0,38 +chr18 77211900 . C G 97.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.910;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.0467;MLEAC=3;MLEAF=0.375;MQ=24.62;MQ0=0;MQRankSum=1.592;QD=3.14;ReadPosRankSum=1.167;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:18:26,0,18 0/1:12,3:15:53:87,0,53 0/0:10,1:11:9:0,9,111 0/1:7,1:8:18:27,0,18 +chr18 77475234 . T A 98.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.459;DP=55;Dels=0.00;FS=43.471;HaplotypeScore=3.7856;MLEAC=4;MLEAF=0.500;MQ=32.30;MQ0=0;MQRankSum=-0.839;QD=1.79;ReadPosRankSum=-0.090;SB=-3.148e-01 GT:AD:DP:GQ:PL 0/1:13,3:16:75:75,0,227 0/1:11,2:13:17:17,0,258 0/1:9,2:11:19:19,0,182 0/1:13,2:15:30:30,0,315 +chr18 77796574 rs12957601 C T 590.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.266;DB;DP=39;Dels=0.00;FS=4.046;HaplotypeScore=2.7301;MLEAC=5;MLEAF=0.625;MQ=31.34;MQ0=0;MQRankSum=0.350;QD=16.41;ReadPosRankSum=-0.608;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,5:12:99:159,0,113 1/1:1,9:10:27:293,27,0 0/1:8,6:14:99:184,0,163 0/0:3,0:3:3:0,3,24 +chr18 77797321 rs748337 C T 1807.61 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.645;DB;DP=156;Dels=0.00;FS=3.826;HaplotypeScore=2.0510;MLEAC=5;MLEAF=0.625;MQ=35.35;MQ0=0;MQRankSum=-2.406;QD=11.59;ReadPosRankSum=1.361;SB=-3.498e+02 GT:AD:DP:GQ:PL 0/1:30,9:39:99:232,0,845 1/1:9,24:33:24:790,24,0 0/1:22,19:41:99:577,0,543 0/1:29,13:43:99:254,0,814 +chr19 419084 . T C 55.83 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.447;DP=18;Dels=0.00;FS=16.782;HaplotypeScore=4.2478;MLEAC=3;MLEAF=0.500;MQ=18.06;MQ0=0;MQRankSum=1.568;QD=7.98;ReadPosRankSum=-1.447;SB=20.23 GT:AD:DP:GQ:PL ./. 1/1:1,2:3:6:72,6,0 0/0:5,1:7:3:0,3,21 0/1:3,1:4:23:23,0,43 +chr19 547440 . A G 251.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.616;DP=82;Dels=0.02;FS=16.268;HaplotypeScore=3.8811;MLEAC=4;MLEAF=0.500;MQ=26.02;MQ0=0;MQRankSum=-2.883;QD=3.07;ReadPosRankSum=-0.063;SB=-1.177e-02 GT:AD:DP:GQ:PL 0/1:13,6:19:99:106,0,274 0/1:8,5:13:77:98,0,77 0/1:23,5:28:49:49,0,326 0/1:15,5:20:41:41,0,298 +chr19 608052 . A C 96.47 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.450;DP=67;Dels=0.03;FS=31.148;HaplotypeScore=5.3619;MLEAC=5;MLEAF=0.625;MQ=11.87;MQ0=0;MQRankSum=3.408;QD=1.44;ReadPosRankSum=1.876;SB=0.013 GT:AD:DP:GQ:PL 0/1:9,10:19:49:59,0,49 0/1:7,3:10:18:18,0,20 1/1:10,6:16:6:46,6,0 0/1:11,9:20:17:17,0,25 +chr19 617204 . T G 39.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.014;DP=84;Dels=0.02;FS=0.000;HaplotypeScore=10.7285;MLEAC=2;MLEAF=0.250;MQ=28.49;MQ0=0;MQRankSum=-2.298;QD=0.94;ReadPosRankSum=2.484;SB=-1.333e-02 GT:AD:DP:GQ:PL 0/0:26,0:26:39:0,39,455 0/0:14,1:15:21:0,21,245 0/1:20,4:24:37:37,0,357 0/1:13,4:17:44:44,0,180 +chr19 617580 . A G 31.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.521;DP=76;Dels=0.00;FS=7.977;HaplotypeScore=2.7060;MLEAC=2;MLEAF=0.250;MQ=28.45;MQ0=0;MQRankSum=1.086;QD=0.99;ReadPosRankSum=0.404;SB=-2.176e-01 GT:AD:DP:GQ:PL 0/1:8,1:9:19:24,0,19 0/0:18,1:19:27:0,27,269 0/1:21,2:23:49:49,0,164 0/0:24,1:25:13:0,13,371 +chr19 758543 . G A 228.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.370;DP=54;Dels=0.02;FS=53.356;HaplotypeScore=12.7651;MLEAC=4;MLEAF=0.500;MQ=22.80;MQ0=0;MQRankSum=-0.015;QD=4.24;ReadPosRankSum=2.971;SB=-4.292e-01 GT:AD:DP:GQ:PL 0/1:7,6:13:56:137,0,56 0/1:11,5:16:67:77,0,67 0/1:13,2:15:12:12,0,179 0/1:6,3:9:45:45,0,62 +chr19 761583 . A C 64.16 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.460;DP=41;Dels=0.02;FS=4.981;HaplotypeScore=2.7208;MLEAC=1;MLEAF=0.125;MQ=30.81;MQ0=0;MQRankSum=-1.729;QD=4.28;ReadPosRankSum=-0.328;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/0:9,0:9:24:0,24,304 0/0:11,0:11:21:0,21,254 0/1:9,6:15:99:100,0,273 0/0:5,0:5:9:0,9,106 +chr19 810460 rs117696745 C G 514.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.281;DB;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.4964;MLEAC=4;MLEAF=0.500;MQ=35.48;MQ0=0;MQRankSum=1.500;QD=17.15;ReadPosRankSum=-1.866;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:42:0,42,522 1/1:0,10:10:30:381,30,0 0/1:7,5:12:99:162,0,218 0/1:7,1:8:20:20,0,199 +chr19 829527 . T A 66.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.105;DP=117;Dels=0.03;FS=183.004;HaplotypeScore=8.3543;MLEAC=3;MLEAF=0.375;MQ=26.27;MQ0=0;MQRankSum=-5.463;QD=0.78;ReadPosRankSum=0.537;SB=-3.165e+00 GT:AD:DP:GQ:PL 0/1:18,10:28:62:62,0,495 0/1:21,7:28:21:21,0,444 0/0:24,6:30:4:0,4,472 0/1:21,7:28:25:25,0,488 +chr19 830854 rs595844 T C 2893.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.310;DB;DP=106;Dels=0.00;FS=2.160;HaplotypeScore=1.4764;MLEAC=7;MLEAF=0.875;MQ=35.06;MQ0=0;MQRankSum=-1.252;QD=27.30;ReadPosRankSum=0.444;SB=-1.243e+03 GT:AD:DP:GQ:PL 0/1:15,9:24:99:280,0,533 1/1:2,22:24:60:759,60,0 1/1:3,29:32:84:1086,84,0 1/1:4,22:26:66:813,66,0 +chr19 840984 rs2074639 C T 54.71 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.913;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.1989;MLEAC=1;MLEAF=0.125;MQ=29.62;MQ0=0;MQRankSum=0.574;QD=7.82;ReadPosRankSum=0.861;SB=0.072 GT:AD:DP:GQ:PL 0/1:4,3:7:30:90,0,30 0/0:10,0:10:15:0,15,190 0/0:6,0:6:12:0,12,114 0/0:3,0:3:3:0,3,35 +chr19 871974 . C G 72.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.369;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.6618;MLEAC=4;MLEAF=0.500;MQ=28.03;MQ0=0;MQRankSum=-0.091;QD=2.50;ReadPosRankSum=1.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:30:30,0,59 0/1:6,1:7:15:15,0,68 0/1:6,3:9:63:63,0,121 0/1:7,1:8:6:6,0,129 +chr19 960026 . G A 43.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.889;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4343;MLEAC=2;MLEAF=0.250;MQ=30.36;MQ0=0;MQRankSum=-2.691;QD=1.28;ReadPosRankSum=-1.254;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:24:0,24,282 0/1:15,2:18:43:43,0,167 0/0:20,1:21:29:0,29,636 0/1:11,5:16:42:42,0,228 +chr19 1011846 rs10420656 T C 123.54 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.054;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.2938;MLEAC=8;MLEAF=1.00;MQ=21.46;MQ0=0;MQRankSum=2.054;QD=13.73;ReadPosRankSum=-0.573;SB=-3.089e+01 GT:AD:DP:GQ:PL 1/1:3,1:4:3:32,3,0 1/1:0,1:1:3:31,3,0 1/1:0,2:2:6:65,6,0 1/1:0,2:2:3:32,3,0 +chr19 1013388 rs113047119 G A 456.84 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.610;DB;DP=66;Dels=0.00;FS=2.728;HaplotypeScore=11.8409;MLEAC=4;MLEAF=0.500;MQ=30.71;MQ0=0;MQRankSum=-0.625;QD=6.92;ReadPosRankSum=1.480;SB=17.86 GT:AD:DP:GQ:PL 1/1:2,6:9:18:183,18,0 0/1:13,6:19:99:117,0,319 0/1:15,6:21:99:143,0,375 0/1:14,3:17:59:59,0,283 +chr19 1037681 . G A 500.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.989;DP=248;Dels=0.01;FS=54.326;HaplotypeScore=2.9369;MLEAC=4;MLEAF=0.500;MQ=16.53;MQ0=0;MQRankSum=4.024;QD=2.02;ReadPosRankSum=0.348;SB=-4.629e+01 GT:AD:DP:GQ:PL 0/1:44,8:52:99:137,0,347 0/1:50,8:58:99:137,0,193 0/1:63,7:70:99:110,0,249 0/1:56,9:65:99:159,0,267 +chr19 1051908 . G A 111.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.223;DP=94;Dels=0.00;FS=12.782;HaplotypeScore=1.4118;MLEAC=2;MLEAF=0.250;MQ=30.04;MQ0=0;MQRankSum=0.815;QD=3.10;ReadPosRankSum=-0.760;SB=2.18 GT:AD:DP:GQ:PL 0/1:14,2:16:29:29,0,300 0/0:26,0:26:69:0,69,686 0/0:30,2:32:24:0,24,781 0/1:15,5:20:99:124,0,293 +chr19 1058705 . C G 32.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.985;DP=162;Dels=0.00;FS=60.311;HaplotypeScore=6.8157;MLEAC=1;MLEAF=0.125;MQ=29.25;MQ0=0;MQRankSum=-3.183;QD=0.73;ReadPosRankSum=0.760;SB=-5.648e+00 GT:AD:DP:GQ:PL 0/1:38,6:44:68:68,0,880 0/0:33,5:38:21:0,21,714 0/0:49,1:50:90:0,90,1392 0/0:26,2:30:27:0,27,559 +chr19 1073173 . G T 311.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.169;DP=129;Dels=0.00;FS=78.927;HaplotypeScore=22.2689;MLEAC=4;MLEAF=0.500;MQ=24.44;MQ0=0;MQRankSum=1.916;QD=2.42;ReadPosRankSum=0.337;SB=-1.641e+00 GT:AD:DP:GQ:PL 0/1:25,5:30:99:129,0,261 0/1:23,7:30:97:97,0,317 0/1:36,6:42:82:82,0,448 0/1:22,5:27:46:46,0,257 +chr19 1073464 . C A 338.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.321;DP=30;Dels=0.00;FS=17.258;HaplotypeScore=4.2784;MLEAC=4;MLEAF=0.500;MQ=26.31;MQ0=0;MQRankSum=1.949;QD=11.29;ReadPosRankSum=-0.518;SB=-1.219e+00 GT:AD:DP:GQ:PL 0/1:2,5:7:10:129,0,10 0/1:7,3:10:77:77,0,94 0/1:1,4:5:16:57,0,16 0/1:4,4:8:69:118,0,69 +chr19 1080801 . C A 38.52 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.183;DP=70;Dels=0.03;FS=2.484;HaplotypeScore=1.3617;MLEAC=3;MLEAF=0.375;MQ=27.06;MQ0=0;MQRankSum=-2.052;QD=0.77;ReadPosRankSum=1.279;SB=0.860 GT:AD:DP:GQ:PL 0/1:14,1:16:15:15,0,197 0/1:16,1:18:6:6,0,140 0/0:18,0:19:18:0,18,228 0/1:11,4:15:59:59,0,104 +chr19 1086043 rs3761026 T C 338.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.988;DB;DP=60;Dels=0.00;FS=2.648;HaplotypeScore=0.3613;MLEAC=3;MLEAF=0.375;MQ=31.14;MQ0=0;MQRankSum=-3.377;QD=7.88;ReadPosRankSum=-2.717;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,2:17:16:0,16,478 0/1:9,9:18:99:213,0,185 0/1:9,5:14:99:135,0,249 0/1:8,3:11:34:34,0,193 +chr19 1090065 . C G 31.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.030;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=3.5851;MLEAC=3;MLEAF=0.375;MQ=22.87;MQ0=0;MQRankSum=-1.585;QD=1.88;ReadPosRankSum=1.743;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:6:0,6,78 1/1:6,4:10:6:57,6,0 0/0:10,1:11:15:0,15,166 0/1:5,2:7:19:19,0,25 +chr19 1112089 rs111697667 C T 210.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.632;DB;DP=47;Dels=0.02;FS=1.617;HaplotypeScore=2.3439;MLEAC=3;MLEAF=0.375;MQ=28.30;MQ0=0;MQRankSum=0.109;QD=5.41;ReadPosRankSum=1.588;SB=-3.496e+01 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,210 0/1:14,1:15:24:24,0,108 0/1:8,4:12:79:131,0,79 0/1:7,4:11:56:99,0,56 +chr19 1219281 . G A 66.06 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.322;DP=12;Dels=0.00;FS=4.260;HaplotypeScore=1.2685;MLEAC=5;MLEAF=0.625;MQ=22.51;MQ0=0;MQRankSum=0.322;QD=6.61;ReadPosRankSum=-0.956;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,24 1/1:1,2:3:6:58,6,0 0/1:3,2:5:24:24,0,33 1/1:1,1:2:3:27,3,0 +chr19 1399255 . C T 33.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.071;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=10.2641;MLEAC=3;MLEAF=0.375;MQ=24.71;MQ0=0;MQRankSum=-0.243;QD=0.69;ReadPosRankSum=-0.043;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:29:29,0,141 0/1:13,4:17:40:40,0,61 0/1:17,1:18:6:6,0,154 0/0:18,0:18:30:0,30,344 +chr19 1418341 . G C 116.74 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.706;DP=70;Dels=0.04;FS=1.552;HaplotypeScore=25.9301;MLEAC=4;MLEAF=0.500;MQ=25.67;MQ0=0;MQRankSum=-0.466;QD=1.67;ReadPosRankSum=1.265;SB=-1.733e+01 GT:AD:DP:GQ:PL 0/1:15,2:17:19:19,0,253 0/1:15,1:16:15:15,0,67 0/1:14,4:18:59:59,0,172 0/1:13,3:16:66:66,0,147 +chr19 1422297 rs117240167 C T 958.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.818;DB;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3082;MLEAC=3;MLEAF=0.375;MQ=31.80;MQ0=0;MQRankSum=-0.121;QD=10.09;ReadPosRankSum=-1.122;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:14,13:27:99:362,0,356 0/0:26,0:27:57:0,57,696 0/1:24,12:36:99:287,0,596 0/1:19,13:32:99:353,0,387 +chr19 1432533 . C A 91.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.657;DP=99;Dels=0.01;FS=12.181;HaplotypeScore=6.4305;MLEAC=3;MLEAF=0.375;MQ=28.66;MQ0=0;MQRankSum=-4.636;QD=1.27;ReadPosRankSum=3.258;SB=0.013 GT:AD:DP:GQ:PL 0/1:14,5:19:44:44,0,294 0/0:25,2:27:38:0,38,771 0/1:22,7:29:46:46,0,544 0/1:17,6:23:45:45,0,222 +chr19 1486921 . C T 376.29 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.603;DP=46;Dels=0.04;FS=18.603;HaplotypeScore=7.1058;MLEAC=4;MLEAF=0.500;MQ=21.97;MQ0=0;MQRankSum=0.539;QD=8.18;ReadPosRankSum=1.430;SB=-1.399e+00 GT:AD:DP:GQ:PL 0/1:4,4:8:24:114,0,24 0/1:6,5:11:12:98,0,12 0/1:7,5:12:12:106,0,12 0/1:5,8:13:7:100,0,7 +chr19 1556482 . T C 58.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=2.017;DP=24;Dels=0.04;FS=2.869;HaplotypeScore=3.4191;MLEAC=4;MLEAF=1.00;MQ=12.64;MQ0=0;MQRankSum=1.368;QD=5.29;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:4,1:5:3:35,3,0 1/1:2,3:5:6:57,6,0 +chr19 1800032 . A G 150.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.231;DP=105;Dels=0.01;FS=37.357;HaplotypeScore=25.6939;MLEAC=4;MLEAF=0.500;MQ=24.45;MQ0=0;MQRankSum=-1.456;QD=1.43;ReadPosRankSum=2.095;SB=-1.281e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:32:32,0,124 0/1:28,4:32:41:41,0,346 0/1:22,2:24:46:46,0,201 0/1:23,6:29:74:74,0,178 +chr19 1811692 . C T 38.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.646;DP=32;Dels=0.00;FS=9.234;HaplotypeScore=3.9762;MLEAC=4;MLEAF=0.500;MQ=22.30;MQ0=0;MQRankSum=1.752;QD=1.21;ReadPosRankSum=-1.858;SB=0.573 GT:AD:DP:GQ:PL 0/1:7,1:8:24:26,0,24 0/1:6,1:7:20:20,0,44 0/1:4,1:5:17:17,0,26 0/1:11,1:12:18:18,0,46 +chr19 1828102 . G A 38.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.370;DP=72;Dels=0.00;FS=32.997;HaplotypeScore=9.9706;MLEAC=3;MLEAF=0.375;MQ=29.99;MQ0=0;MQRankSum=-0.091;QD=0.70;ReadPosRankSum=-0.315;SB=0.521 GT:AD:DP:GQ:PL 0/1:12,2:14:12:12,0,254 0/1:17,4:21:54:54,0,283 0/0:17,0:17:36:0,36,452 0/1:18,2:20:15:15,0,330 +chr19 1957079 rs11084923 C T 41.01 . AC=4;AF=1.00;AN=4;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=22.08;MQ0=0;QD=20.51;SB=-3.200e+01 GT:AD:DP:GQ:PL 1/1:0,1:1:3:35,3,0 ./. ./. 1/1:0,1:1:3:39,3,0 +chr19 2046445 . A T 30.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.727;DP=21;Dels=0.05;FS=16.853;HaplotypeScore=1.5330;MLEAC=3;MLEAF=0.375;MQ=20.72;MQ0=0;MQRankSum=1.845;QD=3.00;ReadPosRankSum=-1.062;SB=8.18 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,27 0/1:5,1:6:11:11,0,81 1/1:2,2:4:6:61,6,0 0/0:7,0:7:6:0,6,47 +chr19 2078488 rs2074894 T C 635.59 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.251;DB;DP=74;Dels=0.03;FS=9.148;HaplotypeScore=4.1402;MLEAC=5;MLEAF=0.625;MQ=32.15;MQ0=0;MQRankSum=1.495;QD=8.59;ReadPosRankSum=2.997;SB=-7.696e+01 GT:AD:DP:GQ:PL 1/1:2,9:11:27:333,27,0 0/1:15,3:18:54:54,0,354 0/1:17,5:22:99:135,0,518 0/1:14,7:21:99:159,0,259 +chr19 2120961 . C T 45.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.405;DP=74;Dels=0.00;FS=5.241;HaplotypeScore=3.8799;MLEAC=2;MLEAF=0.250;MQ=33.26;MQ0=0;MQRankSum=1.215;QD=1.11;ReadPosRankSum=-1.539;SB=0.593 GT:AD:DP:GQ:PL 0/0:15,0:15:15:0,15,151 0/0:18,0:18:33:0,33,353 0/1:23,2:25:41:41,0,337 0/1:14,2:16:46:46,0,88 +chr19 2185960 . C T 60.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.653;DP=314;Dels=0.00;FS=0.000;HaplotypeScore=20.5546;MLEAC=3;MLEAF=0.375;MQ=29.41;MQ0=0;MQRankSum=-1.713;QD=0.23;ReadPosRankSum=4.360;SB=-1.168e-02 GT:AD:DP:GQ:PL 0/1:90,5:95:45:45,0,902 0/1:74,8:83:53:53,0,1107 0/1:77,6:85:3:3,0,1411 0/0:47,1:50:44:0,44,698 +chr19 2247822 . T C 90.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.625;DP=81;Dels=0.02;FS=0.000;HaplotypeScore=1.5965;MLEAC=3;MLEAF=0.375;MQ=25.07;MQ0=0;MQRankSum=-0.511;QD=1.53;ReadPosRankSum=-2.603;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:28:28,0,136 0/1:20,3:23:65:65,0,230 0/1:13,3:16:40:40,0,189 0/0:20,1:21:11:0,11,338 +chr19 2278622 . C T 31.45 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.050;DP=27;Dels=0.04;FS=6.107;HaplotypeScore=8.5681;MLEAC=4;MLEAF=0.500;MQ=17.66;MQ0=0;MQRankSum=1.850;QD=1.57;ReadPosRankSum=-0.950;SB=0.802 GT:AD:DP:GQ:PL 1/1:3,1:4:3:29,3,0 0/1:8,1:9:17:17,0,17 0/1:5,1:6:17:27,0,17 0/0:6,1:7:3:0,3,31 +chr19 2416809 . T C 93.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.903;DP=61;Dels=0.02;FS=2.407;HaplotypeScore=2.4273;MLEAC=3;MLEAF=0.375;MQ=36.07;MQ0=0;MQRankSum=1.790;QD=2.04;ReadPosRankSum=0.218;SB=0.143 GT:AD:DP:GQ:PL 0/1:12,2:14:29:29,0,294 0/1:14,4:19:66:66,0,304 0/0:14,1:15:15:0,15,424 0/1:10,2:12:42:42,0,260 +chr19 2424188 . G T 30.55 . AC=1;AF=0.167;AN=6;BaseQRankSum=-2.054;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.9875;MLEAC=1;MLEAF=0.167;MQ=24.24;MQ0=0;MQRankSum=-0.248;QD=5.09;ReadPosRankSum=1.203;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,42 0/0:3,0:3:6:0,6,61 0/1:3,3:6:46:64,0,46 ./. +chr19 2444599 . A C 189.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.981;DP=53;Dels=0.00;FS=2.645;HaplotypeScore=1.5661;MLEAC=4;MLEAF=0.500;MQ=30.61;MQ0=0;MQRankSum=-1.445;QD=3.58;ReadPosRankSum=0.253;SB=-3.437e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:65:65,0,178 0/1:13,3:16:76:76,0,191 0/1:12,2:14:19:19,0,245 0/1:7,5:12:72:72,0,81 +chr19 2762585 rs2302491 A C 678.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.723;DB;DP=155;Dels=0.01;FS=15.847;HaplotypeScore=5.3341;MLEAC=3;MLEAF=0.375;MQ=34.31;MQ0=0;MQRankSum=-2.752;QD=5.95;ReadPosRankSum=-0.493;SB=-2.080e+02 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,117,1468 0/1:32,7:40:99:129,0,805 0/1:26,14:40:99:387,0,817 0/1:24,10:34:99:206,0,572 +chr19 2786110 rs78594264 G A 44.71 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.296;DB;DP=15;Dels=0.00;FS=7.404;HaplotypeScore=0.2774;MLEAC=3;MLEAF=0.500;MQ=16.22;MQ0=0;MQRankSum=1.386;QD=4.97;ReadPosRankSum=-1.214;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,31 0/1:4,1:5:27:29,0,27 ./. 1/1:2,2:4:6:55,6,0 +chr19 2811874 rs4807337 T C 73.11 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.744;DB;DP=44;Dels=0.02;FS=24.210;HaplotypeScore=1.7326;MLEAC=5;MLEAF=0.625;MQ=14.73;MQ0=0;MQRankSum=2.861;QD=1.98;ReadPosRankSum=-1.343;SB=4.16 GT:AD:DP:GQ:PL 0/0:7,0:7:3:0,3,39 1/1:11,1:12:3:34,3,0 1/1:5,2:7:6:67,6,0 0/1:14,3:17:15:15,0,96 +chr19 2934282 rs3746073 T C 4056.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.007;DB;DP=182;Dels=0.01;FS=2.969;HaplotypeScore=2.8749;MLEAC=8;MLEAF=1.00;MQ=25.39;MQ0=0;MQRankSum=3.793;QD=22.29;ReadPosRankSum=2.770;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:3,41:44:93:966,93,0 1/1:4,46:51:70:1166,70,0 1/1:1,43:44:96:1010,96,0 1/1:6,36:42:71:914,71,0 +chr19 2989235 . G C 275.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.175;DP=92;Dels=0.00;FS=62.987;HaplotypeScore=2.4227;MLEAC=3;MLEAF=0.375;MQ=32.38;MQ0=0;MQRankSum=-1.247;QD=3.67;ReadPosRankSum=1.611;SB=0.295 GT:AD:DP:GQ:PL 0/1:14,2:16:18:18,0,425 0/1:23,5:28:99:105,0,494 0/0:16,1:17:9:0,9,357 0/1:22,9:31:99:195,0,433 +chr19 3162910 . T G 85.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.618;DP=104;Dels=0.00;FS=52.754;HaplotypeScore=9.2354;MLEAC=3;MLEAF=0.375;MQ=23.44;MQ0=0;MQRankSum=-0.843;QD=1.11;ReadPosRankSum=0.493;SB=-1.791e+00 GT:AD:DP:GQ:PL 0/1:19,4:23:56:56,0,221 0/0:27,0:27:30:0,30,351 0/1:22,6:28:67:67,0,318 0/1:22,4:26:3:3,0,265 +chr19 3193402 . C G 77.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.392;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=3.3911;MLEAC=3;MLEAF=0.375;MQ=25.03;MQ0=0;MQRankSum=0.736;QD=1.84;ReadPosRankSum=1.275;SB=-1.184e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:6:0,6,57 0/1:13,1:14:14:14,0,56 0/1:16,3:19:52:52,0,174 0/1:5,3:8:53:53,0,61 +chr19 3251116 rs72987040 C A 288.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.685;DB;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.3292;MLEAC=1;MLEAF=0.125;MQ=31.52;MQ0=0;MQRankSum=0.154;QD=12.04;ReadPosRankSum=0.573;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/1:13,11:24:99:325,0,339 0/0:17,0:17:51:0,51,606 0/0:19,0:19:48:0,48,563 0/0:22,0:22:51:0,51,580 +chr19 3548080 . G A 39.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.394;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=3.4660;MLEAC=4;MLEAF=0.500;MQ=23.73;MQ0=0;MQRankSum=-0.197;QD=2.32;ReadPosRankSum=-0.197;SB=-3.580e-01 GT:AD:DP:GQ:PL 0/1:5,2:7:18:18,0,111 0/1:4,1:5:8:8,0,116 1/1:3,2:5:6:57,6,0 0/0:6,0:6:6:0,6,45 +chr19 3785223 rs4807509 T G 893.60 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.733;DB;DP=39;Dels=0.03;FS=7.533;HaplotypeScore=2.9463;MLEAC=7;MLEAF=0.875;MQ=30.21;MQ0=0;MQRankSum=1.559;QD=22.91;ReadPosRankSum=0.700;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,11:13:33:360,33,0 0/1:6,2:8:51:51,0,122 1/1:1,9:10:24:308,24,0 1/1:1,6:7:18:219,18,0 +chr19 3819161 . G A 40.05 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.723;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=13.1756;MLEAC=2;MLEAF=0.250;MQ=20.52;MQ0=0;MQRankSum=0.537;QD=2.50;ReadPosRankSum=0.350;SB=-6.525e-01 GT:AD:DP:GQ:PL 0/1:7,3:10:37:56,0,37 0/0:12,1:13:15:0,15,169 0/0:6,1:7:9:0,9,88 0/1:5,1:6:18:25,0,18 +chr19 3822049 . G C 46.19 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.866;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.1885;MLEAC=4;MLEAF=0.667;MQ=25.74;MQ0=0;MQRankSum=0.365;QD=3.85;ReadPosRankSum=-0.365;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:6:47,6,0 0/1:5,1:6:13:13,0,112 ./. 0/1:2,1:3:23:26,0,23 +chr19 3822258 . T G 41 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.648;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5747;MLEAC=2;MLEAF=0.250;MQ=30.81;MQ0=0;MQRankSum=-0.852;QD=0.93;ReadPosRankSum=-0.576;SB=-8.495e-03 GT:AD:DP:GQ:PL 0/1:22,3:25:34:34,0,457 0/0:19,1:20:8:0,8,393 0/1:16,3:19:48:48,0,324 0/0:17,0:17:27:0,27,310 +chr19 3960153 . T A 131.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-7.317;DP=252;Dels=0.00;FS=35.160;HaplotypeScore=3.9031;MLEAC=3;MLEAF=0.375;MQ=34.05;MQ0=0;MQRankSum=-6.280;QD=0.66;ReadPosRankSum=-0.916;SB=-7.434e-01 GT:AD:DP:GQ:PL 0/1:62,9:71:65:65,0,1786 0/1:56,7:63:6:6,0,1621 0/1:54,10:64:99:102,0,1452 0/0:49,5:54:15:0,15,1350 +chr19 4222784 . C T 34.09 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.924;DP=62;Dels=0.00;FS=2.420;HaplotypeScore=1.8240;MLEAC=1;MLEAF=0.125;MQ=36.43;MQ0=0;MQRankSum=-1.539;QD=2.13;ReadPosRankSum=-0.632;SB=-2.141e+00 GT:AD:DP:GQ:PL 0/0:14,0:14:33:0,33,427 0/1:13,3:16:69:69,0,339 0/0:17,0:17:30:0,30,365 0/0:14,1:15:0:0,0,362 +chr19 4358029 . C T 228.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.186;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.6334;MLEAC=4;MLEAF=0.500;MQ=29.09;MQ0=0;MQRankSum=0.845;QD=3.75;ReadPosRankSum=-0.215;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:48:48,0,218 0/1:9,3:12:71:71,0,87 0/1:11,4:15:93:93,0,241 0/1:14,3:17:59:59,0,76 +chr19 4358039 . G C 46.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.645;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.6700;MLEAC=3;MLEAF=0.375;MQ=27.49;MQ0=0;MQRankSum=-1.162;QD=1.15;ReadPosRankSum=-0.018;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,3:14:41:41,0,118 0/1:9,2:11:36:36,0,87 0/0:17,0:18:33:0,33,404 0/1:14,1:15:12:12,0,95 +chr19 4454181 . C A 99.82 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.764;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5633;MLEAC=4;MLEAF=0.500;MQ=29.22;MQ0=0;MQRankSum=-2.859;QD=2.94;ReadPosRankSum=2.349;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:16:16,0,177 0/1:6,3:9:75:75,0,101 0/1:8,3:11:37:37,0,170 0/1:5,2:7:14:14,0,46 +chr19 4491630 . A T 41.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.545;DP=133;Dels=0.00;FS=8.167;HaplotypeScore=4.4941;MLEAC=2;MLEAF=0.250;MQ=35.18;MQ0=0;MQRankSum=-1.734;QD=0.66;ReadPosRankSum=-0.720;SB=-3.761e-01 GT:AD:DP:GQ:PL 0/0:30,1:31:69:0,69,818 0/1:27,3:30:15:15,0,706 0/0:39,1:40:67:0,67,1129 0/1:28,4:32:67:67,0,642 +chr19 4679869 . G T 675.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.240;DP=97;Dels=0.00;FS=27.295;HaplotypeScore=7.5959;MLEAC=4;MLEAF=0.500;MQ=31.50;MQ0=0;MQRankSum=1.115;QD=6.96;ReadPosRankSum=0.941;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/1:17,5:22:99:133,0,245 0/1:17,8:25:99:205,0,145 0/1:16,7:23:99:188,0,171 0/1:19,8:27:99:192,0,221 +chr19 4704387 . T C 120.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.304;DP=46;Dels=0.04;FS=2.634;HaplotypeScore=6.5539;MLEAC=3;MLEAF=0.375;MQ=21.86;MQ0=0;MQRankSum=1.632;QD=3.10;ReadPosRankSum=-0.968;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:20:20,0,46 0/1:13,2:15:43:43,0,46 0/1:9,4:13:99:99,0,124 0/0:7,0:7:3:0,3,37 +chr19 4817484 . C A 93.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.129;DP=75;Dels=0.00;FS=27.622;HaplotypeScore=10.6531;MLEAC=3;MLEAF=0.375;MQ=25.02;MQ0=0;MQRankSum=1.022;QD=1.81;ReadPosRankSum=-1.679;SB=-1.008e+00 GT:AD:DP:GQ:PL 0/0:22,1:23:39:0,39,386 0/1:13,3:16:35:35,0,147 0/1:15,5:20:94:94,0,183 0/1:14,2:16:7:7,0,254 +chr19 4817913 . C T 183.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.148;DP=83;Dels=0.04;FS=71.882;HaplotypeScore=10.0738;MLEAC=4;MLEAF=0.500;MQ=25.32;MQ0=0;MQRankSum=-2.391;QD=2.21;ReadPosRankSum=0.778;SB=-4.155e+00 GT:AD:DP:GQ:PL 0/1:11,3:14:1:1,0,241 0/1:18,6:25:69:69,0,233 0/1:17,6:23:71:71,0,317 0/1:10,8:18:83:83,0,156 +chr19 4861304 . A C 57.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.045;DP=32;Dels=0.00;FS=14.548;HaplotypeScore=2.8988;MLEAC=3;MLEAF=0.375;MQ=22.34;MQ0=0;MQRankSum=1.299;QD=2.76;ReadPosRankSum=0.851;SB=2.29 GT:AD:DP:GQ:PL 0/0:4,0:4:3:0,3,27 0/0:7,0:7:6:0,6,54 0/1:9,1:10:5:5,0,121 1/1:8,3:11:9:95,9,0 +chr19 5004191 rs59541213 G A 49.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.41;MQ0=0;MQRankSum=0.736;QD=16.59;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. ./. 1/1:1,2:3:6:81,6,0 +chr19 5208393 . A C 104.05 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.639;DP=46;Dels=0.00;FS=5.237;HaplotypeScore=6.8938;MLEAC=4;MLEAF=0.500;MQ=27.90;MQ0=0;MQRankSum=1.607;QD=2.26;ReadPosRankSum=-0.727;SB=-1.788e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:20:20,0,41 0/1:11,2:13:48:48,0,66 0/1:11,1:12:9:9,0,106 0/1:11,3:14:69:69,0,104 +chr19 5257151 rs77002056 C T 38.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=7;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=17.18;MQ0=0;MQRankSum=0.736;QD=7.60;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,1:2:3:32,3,0 1/1:2,1:3:3:39,3,0 ./. +chr19 5287083 . G A 37.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DP=7;Dels=0.00;FS=11.761;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=19.21;MQ0=0;MQRankSum=1.231;QD=7.40;ReadPosRankSum=-1.231;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,1:3:3:41,3,0 ./. 1/1:1,1:2:3:29,3,0 +chr19 5679535 . T A 320.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.561;DP=83;Dels=0.02;FS=16.055;HaplotypeScore=9.1417;MLEAC=4;MLEAF=0.500;MQ=30.30;MQ0=0;MQRankSum=1.465;QD=3.86;ReadPosRankSum=0.387;SB=-1.336e-02 GT:AD:DP:GQ:PL 0/1:20,2:22:38:38,0,186 0/1:12,6:18:99:174,0,193 0/1:17,5:22:99:116,0,170 0/1:17,2:19:35:35,0,340 +chr19 5684776 . G T 140.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.345;DP=67;Dels=0.00;FS=10.804;HaplotypeScore=7.7890;MLEAC=4;MLEAF=0.500;MQ=18.92;MQ0=0;MQRankSum=3.339;QD=2.10;ReadPosRankSum=-2.286;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:35:57,0,35 0/1:17,2:19:38:38,0,120 0/1:14,2:16:20:49,0,20 0/1:12,2:14:39:39,0,45 +chr19 5866585 rs778982 C T 1225.61 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.986;DB;DP=90;Dels=0.00;FS=8.528;HaplotypeScore=3.5094;MLEAC=7;MLEAF=0.875;MQ=24.36;MQ0=0;MQRankSum=1.911;QD=13.62;ReadPosRankSum=-1.186;SB=-4.624e+02 GT:AD:DP:GQ:PL 0/1:12,10:22:99:204,0,142 1/1:6,14:21:24:265,24,0 1/1:5,19:24:17:415,17,0 1/1:5,18:23:36:386,36,0 +chr19 5927922 . C A 186.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.175;DP=66;Dels=0.00;FS=2.690;HaplotypeScore=7.8673;MLEAC=4;MLEAF=0.500;MQ=23.78;MQ0=0;MQRankSum=1.957;QD=2.83;ReadPosRankSum=2.307;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,5:18:17:111,0,17 0/1:17,2:19:31:31,0,175 0/1:15,3:18:19:63,0,19 0/1:8,3:11:24:24,0,47 +chr19 5978163 . C G 34.74 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.467;DP=21;Dels=0.05;FS=0.000;HaplotypeScore=2.7583;MLEAC=4;MLEAF=0.500;MQ=18.31;MQ0=0;MQRankSum=2.024;QD=2.67;ReadPosRankSum=-0.311;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,2:6:6:50,6,0 0/0:5,0:5:3:0,3,23 1/1:5,1:6:3:27,3,0 0/0:3,0:3:3:0,3,27 +chr19 6040004 . G T 55.67 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.017;DP=10;Dels=0.00;FS=13.222;HaplotypeScore=0.4947;MLEAC=1;MLEAF=0.250;MQ=26.80;MQ0=0;MQRankSum=0.421;QD=11.13;ReadPosRankSum=0.421;SB=0.291 GT:AD:DP:GQ:PL 0/1:2,3:5:58:88,0,58 ./. ./. 0/0:2,1:3:6:0,6,56 +chr19 6312326 . A C 47.48 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.609;DP=73;Dels=0.00;FS=5.100;HaplotypeScore=12.9569;MLEAC=4;MLEAF=0.500;MQ=23.42;MQ0=0;MQRankSum=0.756;QD=0.65;ReadPosRankSum=-2.047;SB=-7.949e-01 GT:AD:DP:GQ:PL 0/1:15,1:16:18:18,0,148 0/1:20,2:22:26:26,0,81 0/1:19,1:20:6:6,0,185 0/1:13,2:15:39:39,0,69 +chr19 6389726 . T C 48.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.658;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=0.8445;MLEAC=3;MLEAF=0.375;MQ=26.51;MQ0=0;MQRankSum=1.288;QD=1.00;ReadPosRankSum=3.278;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:22:22,0,220 0/1:16,3:19:61:61,0,144 0/1:10,1:11:8:8,0,96 0/0:11,0:11:18:0,18,176 +chr19 6411793 . G T 46.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.294;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=10.5767;MLEAC=2;MLEAF=0.250;MQ=24.73;MQ0=0;MQRankSum=0.775;QD=1.68;ReadPosRankSum=-0.294;SB=-1.362e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:52:52,0,125 0/0:10,0:10:9:0,9,101 0/1:12,2:14:36:36,0,87 0/0:15,0:15:18:0,18,179 +chr19 6452483 . T G 180.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.225;DP=70;Dels=0.00;FS=40.288;HaplotypeScore=6.2328;MLEAC=4;MLEAF=0.500;MQ=28.82;MQ0=0;MQRankSum=0.309;QD=2.58;ReadPosRankSum=-0.286;SB=-2.511e+00 GT:AD:DP:GQ:PL 0/1:19,2:21:34:34,0,259 0/1:10,5:15:99:114,0,132 0/1:19,2:21:30:30,0,283 0/1:11,2:13:45:45,0,133 +chr19 6686030 . G A 124.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.660;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=6.9152;MLEAC=3;MLEAF=0.375;MQ=31.55;MQ0=0;MQRankSum=-1.025;QD=2.12;ReadPosRankSum=1.625;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:25,2:27:4:0,4,649 0/1:8,4:12:98:98,0,172 0/1:21,2:23:5:5,0,533 0/1:17,5:22:62:62,0,367 +chr19 6702042 rs433594 A G 750.31 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.672;DB;DP=27;Dels=0.00;FS=28.641;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=28.56;MQ0=0;MQRankSum=3.105;QD=27.79;ReadPosRankSum=1.467;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:9:120,9,0 1/1:1,7:8:21:237,21,0 1/1:1,10:11:30:339,30,0 1/1:2,3:5:9:93,9,0 +chr19 6744718 rs61757561 G C 772.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.353;DB;DP=107;Dels=0.03;FS=4.841;HaplotypeScore=5.5928;MLEAC=3;MLEAF=0.375;MQ=33.47;MQ0=0;MQRankSum=-0.603;QD=10.59;ReadPosRankSum=-0.228;SB=-1.410e+02 GT:AD:DP:GQ:PL 0/0:34,0:34:93:0,93,1171 0/1:12,9:21:99:285,0,321 0/1:14,9:23:99:255,0,195 0/1:17,9:26:99:276,0,363 +chr19 6754139 . T G 66.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.263;DP=61;Dels=0.00;FS=11.108;HaplotypeScore=9.8836;MLEAC=2;MLEAF=0.250;MQ=29.29;MQ0=0;MQRankSum=-0.677;QD=2.15;ReadPosRankSum=0.640;SB=0.144 GT:AD:DP:GQ:PL 0/1:8,3:11:68:68,0,113 0/0:12,0:12:21:0,21,214 0/1:17,3:20:40:40,0,231 0/0:17,1:18:18:0,18,178 +chr19 6935113 rs252551 C T 394.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.645;DB;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=18.0947;MLEAC=4;MLEAF=0.500;MQ=21.91;MQ0=0;MQRankSum=-0.445;QD=3.46;ReadPosRankSum=-3.093;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:35,7:42:99:122,0,613 0/1:9,18:27:11:261,0,11 0/1:34,10:45:51:51,0,493 0/0:25,3:28:0:0,0,228 +chr19 6939910 rs463891 G A 618.24 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.552;DB;DP=21;Dels=0.05;FS=12.788;HaplotypeScore=0.4811;MLEAC=8;MLEAF=1.00;MQ=31.82;MQ0=0;MQRankSum=1.552;QD=29.44;ReadPosRankSum=-0.822;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,4:4:12:144,12,0 1/1:1,4:5:12:155,12,0 1/1:1,6:7:18:212,18,0 1/1:0,4:4:12:146,12,0 +chr19 7504861 . G T 322.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.457;DP=101;Dels=0.01;FS=42.264;HaplotypeScore=6.3284;MLEAC=4;MLEAF=0.500;MQ=35.65;MQ0=0;MQRankSum=-2.627;QD=3.19;ReadPosRankSum=2.373;SB=-1.252e-02 GT:AD:DP:GQ:PL 0/1:16,7:23:99:161,0,413 0/1:25,3:28:44:44,0,572 0/1:23,3:26:38:38,0,577 0/1:18,5:23:99:122,0,348 +chr19 7505143 . C T 62.95 . AC=1;AF=0.167;AN=6;BaseQRankSum=0.525;DP=52;Dels=0.02;FS=15.051;HaplotypeScore=22.7404;MLEAC=1;MLEAF=0.167;MQ=17.85;MQ0=0;MQRankSum=0.903;QD=4.20;ReadPosRankSum=-0.651;SB=25.59 GT:AD:DP:GQ:PL ./. 0/0:13,1:14:6:0,6,66 0/1:10,5:15:55:97,0,55 0/0:13,1:14:12:0,12,115 +chr19 7595264 . G T 423.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.037;DP=239;Dels=0.00;FS=106.092;HaplotypeScore=12.0389;MLEAC=4;MLEAF=0.500;MQ=33.85;MQ0=0;MQRankSum=4.143;QD=1.77;ReadPosRankSum=0.097;SB=-1.190e-02 GT:AD:DP:GQ:PL 0/1:39,7:46:93:93,0,1037 0/1:53,6:59:48:48,0,1214 0/1:66,14:80:99:272,0,1618 0/1:48,5:53:53:53,0,990 +chr19 7607441 rs574930 C T 138.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.153;DB;DP=23;Dels=0.00;FS=6.320;HaplotypeScore=2.6611;MLEAC=4;MLEAF=0.500;MQ=22.02;MQ0=0;MQRankSum=1.523;QD=7.71;ReadPosRankSum=0.998;SB=-2.216e+00 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,55 1/1:3,2:5:6:60,6,0 0/1:6,3:9:38:41,0,38 0/1:1,3:4:11:82,0,11 +chr19 7607730 . C T 40.47 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.026;DP=52;Dels=0.02;FS=10.646;HaplotypeScore=5.8680;MLEAC=4;MLEAF=0.500;MQ=27.63;MQ0=0;MQRankSum=-1.861;QD=0.78;ReadPosRankSum=-0.226;SB=-8.599e-01 GT:AD:DP:GQ:PL 0/1:10,2:12:30:30,0,144 0/1:7,1:8:20:20,0,100 0/1:11,3:14:29:29,0,186 0/1:15,2:17:2:2,0,218 +chr19 7675543 . G T 618.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.756;DP=165;Dels=0.01;FS=51.940;HaplotypeScore=14.8063;MLEAC=4;MLEAF=0.500;MQ=25.74;MQ0=0;MQRankSum=-1.716;QD=3.75;ReadPosRankSum=2.638;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,7:40:87:87,0,583 0/1:31,11:42:99:210,0,416 0/1:30,8:38:99:154,0,565 0/1:31,13:44:99:210,0,364 +chr19 7734347 . T G 612.47 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.529;DP=92;Dels=0.00;FS=30.381;HaplotypeScore=7.5999;MLEAC=7;MLEAF=0.875;MQ=16.92;MQ0=0;MQRankSum=4.425;QD=6.66;ReadPosRankSum=1.191;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:11,10:21:24:240,24,0 0/1:14,10:24:31:74,0,31 1/1:13,7:20:18:156,18,0 1/1:12,14:27:1:185,1,0 +chr19 7743791 . A C 31.34 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.930;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.4338;MLEAC=4;MLEAF=0.500;MQ=26.12;MQ0=0;MQRankSum=1.437;QD=3.13;ReadPosRankSum=-0.592;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:25,3,0 0/1:2,1:3:17:17,0,28 0/0:5,0:5:6:0,6,51 0/1:4,1:5:32:32,0,33 +chr19 7812436 . G T 97.42 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.131;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=12.5082;MLEAC=4;MLEAF=0.500;MQ=24.25;MQ0=0;MQRankSum=0.234;QD=1.22;ReadPosRankSum=-1.475;SB=-8.311e-01 GT:AD:DP:GQ:PL 0/1:15,1:16:2:2,0,165 0/1:19,3:22:55:55,0,161 0/1:21,2:23:44:44,0,92 0/1:14,5:19:37:37,0,74 +chr19 7830066 . C T 47.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.193;DP=90;Dels=0.00;FS=20.673;HaplotypeScore=1.5706;MLEAC=2;MLEAF=0.250;MQ=10.90;MQ0=0;MQRankSum=2.748;QD=1.05;ReadPosRankSum=-1.181;SB=-3.935e-01 GT:AD:DP:GQ:PL 0/0:21,0:21:9:0,9,98 0/1:18,2:20:18:57,0,18 0/0:24,0:24:6:0,6,53 1/1:24,1:25:3:32,3,0 +chr19 7830583 . A G 40.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.560;DP=194;Dels=0.00;FS=26.566;HaplotypeScore=1.4232;MLEAC=2;MLEAF=0.250;MQ=13.90;MQ0=0;MQRankSum=1.999;QD=0.38;ReadPosRankSum=-2.217;SB=0.189 GT:AD:DP:GQ:PL 0/0:42,1:43:12:0,12,153 0/1:55,2:57:40:40,0,166 0/0:46,1:47:3:0,3,43 0/1:45,2:47:40:40,0,114 +chr19 7970635 rs4804833 A G 3034.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.346;DB;DP=98;Dels=0.01;FS=16.767;HaplotypeScore=0.4976;MLEAC=8;MLEAF=1.00;MQ=31.10;MQ0=0;MQRankSum=2.398;QD=30.97;ReadPosRankSum=1.698;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,21:22:60:680,60,0 1/1:2,27:29:78:915,78,0 1/1:1,29:30:81:938,81,0 1/1:0,16:16:48:541,48,0 +chr19 7992494 . G C 30.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.454;DP=61;Dels=0.03;FS=0.000;HaplotypeScore=9.6830;MLEAC=2;MLEAF=0.250;MQ=25.35;MQ0=0;MQRankSum=0.561;QD=0.83;ReadPosRankSum=-0.401;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:18:0,18,176 0/0:13,0:13:12:0,12,114 0/1:22,2:24:29:29,0,158 0/1:10,2:12:43:43,0,52 +chr19 8028450 . T C 673.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.203;DP=214;Dels=0.00;FS=321.632;HaplotypeScore=5.6426;MLEAC=4;MLEAF=0.500;MQ=38.99;MQ0=0;MQRankSum=-6.020;QD=3.15;ReadPosRankSum=3.192;SB=0.201 GT:AD:DP:GQ:PL 0/1:42,8:50:99:134,0,1139 0/1:45,14:59:99:278,0,1359 0/1:42,9:51:99:171,0,1109 0/1:43,10:53:99:133,0,1158 +chr19 8120964 . C T 121.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.103;DP=71;Dels=0.00;FS=20.699;HaplotypeScore=7.2938;MLEAC=3;MLEAF=0.375;MQ=26.39;MQ0=0;MQRankSum=-2.791;QD=2.59;ReadPosRankSum=2.846;SB=0.073 GT:AD:DP:GQ:PL 0/1:15,4:19:78:78,0,148 0/1:9,4:13:34:34,0,50 0/1:12,3:15:53:53,0,141 0/0:21,3:24:27:0,27,294 +chr19 8140359 . A C 31.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.404;DP=42;Dels=0.02;FS=2.621;HaplotypeScore=4.6151;MLEAC=3;MLEAF=0.375;MQ=25.69;MQ0=0;MQRankSum=-1.092;QD=0.94;ReadPosRankSum=0.218;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:15:15,0,55 0/1:9,2:11:50:50,0,89 0/1:13,2:15:8:8,0,152 0/0:8,0:9:18:0,18,197 +chr19 8175656 . G T 92.71 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.202;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=5.8251;MLEAC=2;MLEAF=0.250;MQ=28.25;MQ0=0;MQRankSum=-2.242;QD=2.02;ReadPosRankSum=2.883;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:24:0,24,250 0/1:20,3:23:62:62,0,152 0/0:20,2:22:13:0,13,367 0/1:18,5:23:72:72,0,240 +chr19 8176674 . G A 168.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.906;DP=81;Dels=0.04;FS=10.754;HaplotypeScore=5.4590;MLEAC=4;MLEAF=0.500;MQ=28.63;MQ0=0;MQRankSum=-2.415;QD=2.08;ReadPosRankSum=1.776;SB=-1.222e-02 GT:AD:DP:GQ:PL 0/1:20,3:23:41:41,0,380 0/1:12,3:15:40:40,0,184 0/1:16,4:20:55:55,0,219 0/1:15,5:20:75:75,0,185 +chr19 8212279 . C A 40.78 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.296;DP=15;Dels=0.00;FS=6.818;HaplotypeScore=2.2748;MLEAC=3;MLEAF=0.500;MQ=21.33;MQ0=0;MQRankSum=1.214;QD=5.83;ReadPosRankSum=-1.580;SB=1.28 GT:AD:DP:GQ:PL 0/1:3,1:4:17:17,0,33 1/1:1,2:3:6:64,6,0 ./. 0/0:5,0:5:6:0,6,51 +chr19 8315847 rs379983 A G 3111.10 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.902;DB;DP=137;Dels=0.00;FS=62.774;HaplotypeScore=3.5243;MLEAC=8;MLEAF=1.00;MQ=27.49;MQ0=0;MQRankSum=1.147;QD=22.71;ReadPosRankSum=3.903;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,31:34:55:919,55,0 1/1:5,30:35:51:893,51,0 1/1:6,28:34:17:737,17,0 1/1:8,26:34:11:601,11,0 +chr19 8389404 . G A 63.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.058;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=10.7878;MLEAC=2;MLEAF=0.250;MQ=27.96;MQ0=0;MQRankSum=0.686;QD=2.12;ReadPosRankSum=-1.784;SB=0.039 GT:AD:DP:GQ:PL 0/0:10,0:10:18:0,18,193 0/1:9,2:11:49:49,0,131 0/0:11,0:11:27:0,27,297 0/1:14,3:17:56:56,0,163 +chr19 8412189 rs4804302 G C 332.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.189;DB;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.3335;MLEAC=3;MLEAF=0.375;MQ=22.47;MQ0=0;MQRankSum=2.555;QD=6.66;ReadPosRankSum=-0.553;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:36:0,36,374 0/1:8,7:15:99:164,0,111 0/1:13,6:19:99:143,0,129 0/1:11,5:16:69:69,0,118 +chr19 8436352 . T G 263.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.222;DP=105;Dels=0.00;FS=74.794;HaplotypeScore=3.0751;MLEAC=4;MLEAF=0.500;MQ=34.14;MQ0=0;MQRankSum=-1.238;QD=2.51;ReadPosRankSum=2.261;SB=-1.489e-02 GT:AD:DP:GQ:PL 0/1:23,7:30:99:181,0,667 0/1:16,2:18:31:31,0,388 0/1:26,4:30:43:43,0,846 0/1:23,4:27:51:51,0,615 +chr19 8550926 . A C 73.13 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.595;DP=98;Dels=0.01;FS=4.213;HaplotypeScore=8.3607;MLEAC=4;MLEAF=0.500;MQ=27.54;MQ0=0;MQRankSum=0.456;QD=0.75;ReadPosRankSum=-2.608;SB=-5.441e+01 GT:AD:DP:GQ:PL 0/1:15,4:19:65:65,0,137 0/1:26,2:28:13:13,0,614 0/1:23,3:26:10:10,0,370 0/1:20,4:24:27:27,0,266 +chr19 8553630 rs6992 C T 5031.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.049;DB;DP=159;Dels=0.01;FS=0.000;HaplotypeScore=2.6400;MLEAC=8;MLEAF=1.00;MQ=30.91;MQ0=0;MQRankSum=2.334;QD=31.64;ReadPosRankSum=1.358;SB=-1.887e+03 GT:AD:DP:GQ:PL 1/1:1,40:41:99:1338,111,0 1/1:2,35:37:80:1179,80,0 1/1:2,48:50:99:1670,138,0 1/1:2,28:30:75:844,75,0 +chr19 8932092 rs2910347 G A 35.91 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.872;DB;DP=46;Dels=0.00;FS=3.144;HaplotypeScore=5.9741;MLEAC=1;MLEAF=0.250;MQ=15.26;MQ0=0;MQRankSum=-0.323;QD=3.26;ReadPosRankSum=-0.452;SB=9.94 GT:AD:DP:GQ:PL 1/1:3,5:11:9:74,9,0 0/0:9,1:11:15:0,15,132 ./. ./. +chr19 8995853 rs11672574 T C 1843 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.885;DB;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.3418;MLEAC=8;MLEAF=1.00;MQ=28.90;MQ0=0;MQRankSum=2.685;QD=27.10;ReadPosRankSum=1.384;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,15:20:19:446,19,0 1/1:3,12:15:33:403,33,0 1/1:0,17:17:48:554,48,0 1/1:2,14:16:42:479,42,0 +chr19 9015526 . A G 150.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.770;DP=131;Dels=0.01;FS=4.660;HaplotypeScore=2.9302;MLEAC=2;MLEAF=0.250;MQ=26.95;MQ0=0;MQRankSum=-2.858;QD=2.18;ReadPosRankSum=1.559;SB=-2.444e-03 GT:AD:DP:GQ:PL 0/0:31,1:32:12:0,12,366 0/1:30,9:39:99:139,0,427 0/0:28,1:29:25:0,25,435 0/1:25,5:30:53:53,0,302 +chr19 9021050 . T C 272.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.149;DP=199;Dels=0.01;FS=19.693;HaplotypeScore=8.8871;MLEAC=4;MLEAF=0.500;MQ=23.11;MQ0=0;MQRankSum=2.022;QD=1.37;ReadPosRankSum=0.679;SB=-5.145e-01 GT:AD:DP:GQ:PL 0/1:42,8:50:99:127,0,631 0/1:44,3:47:8:8,0,378 0/1:47,8:55:99:115,0,556 0/1:38,8:46:64:64,0,497 +chr19 9060656 rs2216663 C T 4467.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.741;DB;DP=403;Dels=0.00;FS=0.000;HaplotypeScore=1.6847;MLEAC=4;MLEAF=0.500;MQ=30.20;MQ0=0;MQRankSum=4.755;QD=14.89;ReadPosRankSum=2.708;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:16,81:97:99:2692,146,0 0/0:103,0:103:99:0,240,2713 0/1:78,36:114:99:854,0,1775 0/1:56,33:89:99:921,0,844 +chr19 9070310 . A C 778.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.157;DP=324;Dels=0.01;FS=235.625;HaplotypeScore=15.0478;MLEAC=4;MLEAF=0.500;MQ=26.81;MQ0=0;MQRankSum=1.479;QD=2.40;ReadPosRankSum=3.674;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:73,11:84:99:195,0,1034 0/1:60,13:73:99:181,0,934 0/1:69,8:77:66:66,0,1108 0/1:68,20:88:99:379,0,853 +chr19 9070837 rs2547067 G A 6932.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.016;DB;DP=428;Dels=0.00;FS=31.786;HaplotypeScore=9.9601;MLEAC=5;MLEAF=0.625;MQ=34.79;MQ0=0;MQRankSum=-1.487;QD=16.20;ReadPosRankSum=1.045;SB=-3.345e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:3441,283,0 0/1:70,37:107:99:1068,0,1803 0/1:85,51:136:99:1506,0,2454 0/1:58,31:89:99:917,0,1584 +chr19 9090784 rs73495785 C T 1544.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.759;DB;DP=170;Dels=0.02;FS=0.690;HaplotypeScore=5.4414;MLEAC=3;MLEAF=0.375;MQ=38.10;MQ0=0;MQRankSum=0.299;QD=12.87;ReadPosRankSum=1.861;SB=-4.370e+02 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,144,1954 0/1:22,15:37:99:486,0,653 0/1:27,18:45:99:607,0,861 0/1:19,15:34:99:495,0,620 +chr19 9115892 . C A 31.61 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.350;DP=37;Dels=0.03;FS=6.043;HaplotypeScore=4.7172;MLEAC=3;MLEAF=0.500;MQ=23.45;MQ0=0;MQRankSum=0.250;QD=0.96;ReadPosRankSum=0.450;SB=-1.711e-01 GT:AD:DP:GQ:PL 0/1:7,1:8:11:11,0,90 0/1:7,1:8:25:25,0,38 0/1:14,2:16:34:34,0,108 ./. +chr19 9237435 rs10407484 A G 225.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.537;DB;DP=327;Dels=0.00;FS=5.971;HaplotypeScore=2.4582;MLEAC=1;MLEAF=0.125;MQ=29.75;MQ0=0;MQRankSum=-5.068;QD=3.05;ReadPosRankSum=1.188;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:48,26:74:99:262,0,1128 0/0:85,1:86:99:0,211,2619 0/0:82,2:84:99:0,177,2120 0/0:81,2:83:99:0,183,2224 +chr19 9271353 . G A 30.34 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.239;DP=75;Dels=0.00;FS=2.482;HaplotypeScore=5.8948;MLEAC=1;MLEAF=0.125;MQ=22.33;MQ0=0;MQRankSum=2.084;QD=0.80;ReadPosRankSum=-0.525;SB=-4.261e+00 GT:AD:DP:GQ:PL 0/1:17,1:18:1:1,0,217 0/0:16,0:18:24:0,24,238 0/0:19,0:19:27:0,27,266 0/1:17,3:20:65:65,0,106 +chr19 9293141 . C G 39.30 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.951;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1408;MLEAC=2;MLEAF=0.250;MQ=20.73;MQ0=0;MQRankSum=1.307;QD=0.98;ReadPosRankSum=2.595;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:3:0,3,22 0/1:17,3:20:60:60,0,96 0/1:18,2:20:19:19,0,82 0/0:14,1:15:10:0,10,265 +chr19 9296909 . T A 38.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.430;DP=280;Dels=0.01;FS=126.945;HaplotypeScore=12.0980;MLEAC=3;MLEAF=0.375;MQ=30.25;MQ0=0;MQRankSum=-1.942;QD=0.18;ReadPosRankSum=2.430;SB=-5.726e-01 GT:AD:DP:GQ:PL 0/1:61,5:66:44:44,0,1189 0/1:64,7:71:30:30,0,1072 0/0:67,2:69:86:0,86,1494 0/1:67,5:72:6:6,0,1258 +chr19 9372410 . T A 47.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.479;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=6.8382;MLEAC=3;MLEAF=0.375;MQ=23.78;MQ0=0;MQRankSum=2.396;QD=0.50;ReadPosRankSum=-0.921;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,1:30:9:9,0,213 0/0:38,1:39:14:0,14,373 0/1:28,2:30:21:21,0,314 0/1:31,3:35:60:60,0,252 +chr19 9408163 rs56161262 G A 119.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.969;DB;DP=76;Dels=0.01;FS=2.323;HaplotypeScore=0.4863;MLEAC=1;MLEAF=0.125;MQ=34.08;MQ0=0;MQRankSum=-3.205;QD=4.62;ReadPosRankSum=0.327;SB=-1.168e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:48:0,48,619 0/1:17,8:25:99:156,0,482 0/0:23,0:23:66:0,66,852 0/0:11,0:11:27:0,27,328 +chr19 9639038 . T A 326.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.284;DP=75;Dels=0.00;FS=10.983;HaplotypeScore=4.9147;MLEAC=4;MLEAF=0.500;MQ=28.54;MQ0=0;MQRankSum=0.368;QD=4.35;ReadPosRankSum=3.875;SB=-4.988e-03 GT:AD:DP:GQ:PL 0/1:12,5:17:98:98,0,150 0/1:20,5:25:99:105,0,181 0/1:18,5:23:99:117,0,199 0/1:8,2:10:49:49,0,55 +chr19 9868360 . G T 69 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.118;DP=139;Dels=0.01;FS=22.702;HaplotypeScore=1.4708;MLEAC=1;MLEAF=0.125;MQ=35.77;MQ0=0;MQRankSum=-1.892;QD=3.45;ReadPosRankSum=-2.784;SB=-5.830e+00 GT:AD:DP:GQ:PL 0/0:40,0:40:78:0,78,941 0/0:36,1:37:54:0,54,1122 0/0:38,2:41:20:0,20,1100 0/1:16,4:20:99:105,0,351 +chr19 10071404 . G C 194.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.177;DP=145;Dels=0.00;FS=134.427;HaplotypeScore=9.2855;MLEAC=3;MLEAF=0.375;MQ=31.93;MQ0=0;MQRankSum=-3.198;QD=1.90;ReadPosRankSum=1.391;SB=0.464 GT:AD:DP:GQ:PL 0/0:40,3:43:12:0,12,955 0/1:24,8:32:99:101,0,674 0/1:32,4:36:46:46,0,676 0/1:28,6:34:90:90,0,590 +chr19 10071634 rs918542 T C 624.57 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.062;DB;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=1.4157;MLEAC=4;MLEAF=0.500;MQ=32.21;MQ0=0;MQRankSum=-3.860;QD=11.78;ReadPosRankSum=-0.402;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:22:51:0,51,655 1/1:2,12:14:33:367,33,0 0/1:14,6:21:99:145,0,323 0/1:9,7:16:99:161,0,222 +chr19 10078708 . A G 191.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.073;DP=108;Dels=0.01;FS=83.208;HaplotypeScore=12.4840;MLEAC=3;MLEAF=0.375;MQ=23.97;MQ0=0;MQRankSum=-0.255;QD=2.36;ReadPosRankSum=3.626;SB=-2.667e+00 GT:AD:DP:GQ:PL 0/1:17,4:24:80:80,0,254 0/1:26,4:32:54:54,0,395 0/1:14,8:25:99:99,0,186 0/0:21,1:26:5:0,5,299 +chr19 10107333 . A T 76.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.803;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=8.8252;MLEAC=3;MLEAF=0.375;MQ=28.71;MQ0=0;MQRankSum=-1.718;QD=1.57;ReadPosRankSum=1.405;SB=0.029 GT:AD:DP:GQ:PL 0/1:9,3:12:63:63,0,208 0/1:15,3:18:31:31,0,206 0/0:22,1:23:21:0,21,487 0/1:16,2:18:26:26,0,248 +chr19 10224772 . C G 37.53 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.955;DP=34;Dels=0.00;FS=2.831;HaplotypeScore=4.1969;MLEAC=1;MLEAF=0.125;MQ=22.42;MQ0=0;MQRankSum=0.553;QD=4.17;ReadPosRankSum=0.955;SB=1.39 GT:AD:DP:GQ:PL 0/0:7,0:7:9:0,9,97 0/0:8,0:9:6:0,6,62 0/1:6,3:9:12:73,0,12 0/0:9,0:9:15:0,15,153 +chr19 10225839 . C T 37.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.156;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.4319;MLEAC=2;MLEAF=0.250;MQ=31.36;MQ0=0;MQRankSum=-0.815;QD=1.62;ReadPosRankSum=1.838;SB=0.039 GT:AD:DP:GQ:PL 0/1:8,3:11:65:65,0,221 0/1:11,1:12:11:11,0,200 0/0:18,1:19:1:0,1,297 0/0:11,0:11:18:0,18,218 +chr19 10226340 rs144940586 GTGCC G 817.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.162;DB;DP=90;FS=1.285;HaplotypeScore=22.7112;MLEAC=4;MLEAF=0.500;MQ=29.75;MQ0=0;MQRankSum=-1.959;QD=9.08;RPA=4,3;RU=TGCC;ReadPosRankSum=1.561;SB=-2.670e+02;STR GT:AD:DP:GQ:PL 0/1:11,5:16:99:223,0,405 0/1:15,5:18:99:322,0,397 0/1:20,6:19:99:162,0,368 0/1:21,4:22:99:162,0,454 +chr19 10265135 . T G 168.24 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.278;DP=214;Dels=0.00;FS=45.761;HaplotypeScore=7.4915;MLEAC=4;MLEAF=0.500;MQ=35.16;MQ0=0;MQRankSum=-4.718;QD=0.79;ReadPosRankSum=1.046;SB=-1.669e+00 GT:AD:DP:GQ:PL 0/1:38,8:46:86:86,0,1155 0/1:51,10:61:99:109,0,1423 0/1:54,5:59:4:4,0,1327 0/1:43,5:48:10:10,0,1199 +chr19 10397956 . A G 36 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.002;DP=51;Dels=0.02;FS=15.660;HaplotypeScore=1.3218;MLEAC=1;MLEAF=0.125;MQ=32.41;MQ0=0;MQRankSum=-1.163;QD=2.25;ReadPosRankSum=-1.658;SB=0.532 GT:AD:DP:GQ:PL 0/0:11,0:11:24:0,24,313 0/1:12,4:16:72:72,0,294 0/0:10,0:10:24:0,24,284 0/0:13,0:13:27:0,27,338 +chr19 10441117 rs3181049 G A 963.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.535;DB;DP=70;Dels=0.00;FS=10.843;HaplotypeScore=0.7219;MLEAC=5;MLEAF=0.625;MQ=29.63;MQ0=0;MQRankSum=-1.252;QD=13.77;ReadPosRankSum=1.860;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:2,14:16:42:463,42,0 0/1:12,6:18:99:147,0,314 0/1:12,9:21:99:274,0,193 0/1:10,5:15:99:125,0,151 +chr19 10569643 rs2358681 T C 64.22 . AC=4;AF=1.00;AN=4;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=20.05;MQ0=0;QD=16.05;SB=-3.422e+01 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:2:3:30,3,0 1/1:0,2:2:6:68,6,0 +chr19 10574505 . A C 33.24 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.259;DP=181;Dels=0.00;FS=132.525;HaplotypeScore=5.0428;MLEAC=2;MLEAF=0.250;MQ=28.59;MQ0=0;MQRankSum=-3.098;QD=0.39;ReadPosRankSum=-0.523;SB=-1.529e+00 GT:AD:DP:GQ:PL 0/1:35,5:40:29:29,0,674 0/1:39,7:46:45:45,0,832 0/0:45,2:47:88:0,88,1175 0/0:42,6:48:6:0,6,1048 +chr19 10577843 rs1051738 C A 1440.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.991;DB;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.8263;MLEAC=3;MLEAF=0.375;MQ=37.48;MQ0=0;MQRankSum=-0.595;QD=15.66;ReadPosRankSum=0.051;SB=-4.660e+02 GT:AD:DP:GQ:PL 0/0:33,0:33:87:0,87,1109 0/1:16,16:32:99:545,0,451 0/1:17,11:28:99:377,0,580 0/1:15,17:32:99:562,0,403 +chr19 10599836 rs11878494 G C 572.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.501;DB;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7399;MLEAC=3;MLEAF=0.375;MQ=32.88;MQ0=0;MQRankSum=-1.275;QD=11.46;ReadPosRankSum=0.656;SB=-8.500e+01 GT:AD:DP:GQ:PL 0/0:13,0:13:30:0,30,378 0/1:9,6:15:99:140,0,270 0/1:7,10:17:99:251,0,135 0/1:10,8:18:99:225,0,239 +chr19 10655605 rs184823980 G A 1116.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.453;DB;DP=209;Dels=0.00;FS=15.641;HaplotypeScore=6.3538;MLEAC=3;MLEAF=0.375;MQ=33.24;MQ0=0;MQRankSum=-0.776;QD=7.25;ReadPosRankSum=2.947;SB=-3.760e+02 GT:AD:DP:GQ:PL 0/1:29,16:45:99:405,0,680 0/0:55,0:55:99:0,156,1822 0/1:41,16:57:99:379,0,1098 0/1:38,14:52:99:376,0,748 +chr19 10692117 rs2304161 T C 299.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.954;DB;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=2.6529;MLEAC=1;MLEAF=0.125;MQ=34.20;MQ0=0;MQRankSum=-0.974;QD=6.98;ReadPosRankSum=-0.417;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/0:56,0:57:99:0,126,1601 0/1:30,12:43:99:336,0,778 0/0:67,1:69:99:0,135,1698 0/0:45,0:45:90:0,90,1113 +chr19 10694350 rs112947704 C A 89.04 . AC=3;AF=0.500;AN=6;BaseQRankSum=2.115;DB;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=20.9685;MLEAC=3;MLEAF=0.500;MQ=20.50;MQ0=0;MQRankSum=0.787;QD=1.65;ReadPosRankSum=1.476;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:13,4:17:14:68,0,14 0/1:18,1:19:8:8,0,81 0/1:12,4:16:15:51,0,15 +chr19 10793824 . C A 32.98 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.088;DP=212;Dels=0.00;FS=45.484;HaplotypeScore=4.9141;MLEAC=2;MLEAF=0.250;MQ=34.62;MQ0=0;MQRankSum=-1.070;QD=0.31;ReadPosRankSum=-0.249;SB=-6.195e+00 GT:AD:DP:GQ:PL 0/0:51,2:53:19:0,19,1085 0/1:54,5:59:3:3,0,1413 0/0:53,1:54:99:0,104,1519 0/1:40,6:46:67:67,0,848 +chr19 10823210 . G C 255.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.485;DP=176;Dels=0.01;FS=52.530;HaplotypeScore=15.7045;MLEAC=4;MLEAF=0.500;MQ=32.72;MQ0=0;MQRankSum=-3.388;QD=1.45;ReadPosRankSum=2.083;SB=-9.892e-02 GT:AD:DP:GQ:PL 0/1:30,2:32:16:16,0,446 0/1:36,8:44:99:122,0,464 0/1:43,8:51:96:96,0,662 0/1:42,5:47:64:64,0,585 +chr19 10828991 . C G 49.25 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.736;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.9966;MLEAC=3;MLEAF=0.750;MQ=33.73;MQ0=0;MQRankSum=-0.736;QD=24.63;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6:84,6,0 ./. 0/0:2,0:2:3:0,3,42 +chr19 11099943 . G C 182.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.211;DP=110;Dels=0.00;FS=7.118;HaplotypeScore=4.3936;MLEAC=3;MLEAF=0.375;MQ=31.66;MQ0=0;MQRankSum=-1.911;QD=2.05;ReadPosRankSum=0.483;SB=-8.080e-03 GT:AD:DP:GQ:PL 0/1:26,4:30:52:52,0,431 0/0:21,0:21:36:0,36,421 0/1:22,3:26:44:44,0,311 0/1:27,6:33:99:130,0,381 +chr19 11150192 . T A 109.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.688;DP=60;Dels=0.02;FS=32.958;HaplotypeScore=2.1594;MLEAC=2;MLEAF=0.250;MQ=31.29;MQ0=0;MQRankSum=1.031;QD=3.64;ReadPosRankSum=-0.702;SB=-2.130e+00 GT:AD:DP:GQ:PL 0/0:13,0:13:24:0,24,279 0/1:12,3:15:76:76,0,272 0/0:16,1:17:2:0,2,315 0/1:11,3:14:73:73,0,136 +chr19 11230808 . T G 169.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.894;DP=144;Dels=0.00;FS=51.532;HaplotypeScore=6.3414;MLEAC=4;MLEAF=0.500;MQ=35.72;MQ0=0;MQRankSum=-4.608;QD=1.18;ReadPosRankSum=1.655;SB=-2.235e+00 GT:AD:DP:GQ:PL 0/1:31,6:37:99:115,0,711 0/1:22,5:27:70:70,0,597 0/1:47,4:51:24:24,0,1092 0/1:25,4:29:1:1,0,605 +chr19 11258431 rs11881058 T C 138.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.353;DB;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.2458;MLEAC=1;MLEAF=0.125;MQ=32.12;MQ0=0;MQRankSum=-1.570;QD=8.18;ReadPosRankSum=1.164;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,8:17:99:175,0,264 0/0:13,0:13:27:0,27,362 0/0:19,0:19:51:0,51,650 0/0:12,0:12:30:0,30,337 +chr19 11280614 . A C 201.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.266;DP=129;Dels=0.01;FS=93.851;HaplotypeScore=5.3474;MLEAC=4;MLEAF=0.500;MQ=33.06;MQ0=0;MQRankSum=-1.596;QD=1.56;ReadPosRankSum=0.149;SB=-1.124e-02 GT:AD:DP:GQ:PL 0/1:19,4:23:69:69,0,421 0/1:37,5:42:48:48,0,1119 0/1:32,5:37:85:85,0,798 0/1:23,3:26:42:42,0,406 +chr19 11358799 rs12978266 G A 540.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.762;DB;DP=103;Dels=0.00;FS=3.740;HaplotypeScore=0.9798;MLEAC=2;MLEAF=0.250;MQ=34.09;MQ0=0;MQRankSum=0.799;QD=11.50;ReadPosRankSum=0.481;SB=-2.770e+02 GT:AD:DP:GQ:PL 0/1:17,8:25:99:223,0,522 0/1:11,11:22:99:359,0,290 0/0:30,0:30:87:0,87,1090 0/0:26,0:26:69:0,69,747 +chr19 11462682 . G T 40.52 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.885;DP=74;Dels=0.00;FS=2.391;HaplotypeScore=10.3128;MLEAC=4;MLEAF=0.500;MQ=23.78;MQ0=0;MQRankSum=0.948;QD=0.55;ReadPosRankSum=-0.433;SB=-1.947e+00 GT:AD:DP:GQ:PL 0/1:17,2:19:8:8,0,293 0/1:17,2:19:22:22,0,156 0/1:14,3:17:49:49,0,197 0/1:18,1:19:1:1,0,163 +chr19 11532300 . C T 479.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.823;DP=153;Dels=0.00;FS=203.821;HaplotypeScore=5.1498;MLEAC=4;MLEAF=0.500;MQ=38.59;MQ0=0;MQRankSum=-6.773;QD=3.13;ReadPosRankSum=-0.028;SB=0.633 GT:AD:DP:GQ:PL 0/1:25,7:32:99:106,0,905 0/1:39,9:50:99:183,0,1074 0/1:33,4:37:30:30,0,1047 0/1:24,10:34:99:203,0,839 +chr19 11553362 . A T 39.92 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.567;DP=57;Dels=0.00;FS=4.977;HaplotypeScore=2.9804;MLEAC=4;MLEAF=0.500;MQ=31.27;MQ0=0;MQRankSum=-2.054;QD=0.70;ReadPosRankSum=1.658;SB=-6.573e-01 GT:AD:DP:GQ:PL 0/1:10,1:11:5:5,0,171 0/1:10,4:14:47:47,0,211 0/1:16,2:18:16:16,0,268 0/1:11,1:14:13:13,0,123 +chr19 11577099 . A T 150.31 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.293;DP=72;Dels=0.00;FS=8.243;HaplotypeScore=2.7081;MLEAC=4;MLEAF=0.500;MQ=28.93;MQ0=0;MQRankSum=-1.299;QD=2.89;ReadPosRankSum=2.724;SB=0.304 GT:AD:DP:GQ:PL 0/1:15,3:18:68:68,0,111 0/1:17,3:20:65:65,0,242 1/1:12,2:14:6:63,6,0 0/0:19,1:20:18:0,18,202 +chr19 11649853 . CA C 105.13 . AC=6;AF=0.750;AN=8;BaseQRankSum=-2.054;DP=26;FS=0.000;HaplotypeScore=10.6767;MLEAC=8;MLEAF=1.00;MQ=16.08;MQ0=0;MQRankSum=1.683;QD=5.26;ReadPosRankSum=-1.203;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:2,3:4:6:102,6,0 1/1:6,1:4:2:11,2,0 0/0:4,1:1:2:0,2,4 1/1:5,2:3:3:39,3,0 +chr19 11849734 . C A 53.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.499;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.0609;MLEAC=3;MLEAF=0.375;MQ=28.32;MQ0=0;MQRankSum=0.235;QD=1.56;ReadPosRankSum=-2.293;SB=-5.504e-01 GT:AD:DP:GQ:PL 0/1:11,1:12:7:7,0,255 0/1:8,1:9:20:20,0,63 0/0:18,0:18:45:0,45,485 0/1:10,3:13:68:68,0,171 +chr19 12157560 . C T 119.74 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.372;DP=296;Dels=0.00;FS=13.832;HaplotypeScore=1.1015;MLEAC=4;MLEAF=0.500;MQ=22.27;MQ0=0;MQRankSum=4.348;QD=0.53;ReadPosRankSum=-2.155;SB=-2.099e+00 GT:AD:DP:GQ:PL 0/1:92,3:95:31:31,0,699 0/0:66,2:68:1:0,1,627 0/1:75,2:77:21:21,0,413 0/1:51,5:56:99:108,0,275 +chr19 12386736 . T A 63.64 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.775;DP=306;Dels=0.00;FS=6.321;HaplotypeScore=1.9845;MLEAC=2;MLEAF=0.250;MQ=20.00;MQ0=0;MQRankSum=2.743;QD=0.37;ReadPosRankSum=-0.983;SB=-4.481e-01 GT:AD:DP:GQ:PL 0/1:68,7:75:47:47,0,527 0/1:86,9:95:57:57,0,670 0/0:87,6:94:11:0,11,617 0/0:37,4:41:5:0,5,316 +chr19 12460663 . T G 50.32 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.281;DP=270;Dels=0.00;FS=21.433;HaplotypeScore=1.1174;MLEAC=3;MLEAF=0.375;MQ=15.32;MQ0=0;MQRankSum=4.052;QD=0.26;ReadPosRankSum=2.567;SB=0.479 GT:AD:DP:GQ:PL 0/1:73,2:75:28:28,0,194 0/1:80,2:82:42:42,0,177 0/0:75,1:76:10:0,10,261 0/1:36,1:37:23:23,0,59 +chr19 12491955 rs11668074 A C 1926.56 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.893;DB;DP=105;Dels=0.03;FS=5.324;HaplotypeScore=1.9482;MLEAC=7;MLEAF=0.875;MQ=26.70;MQ0=0;MQRankSum=-2.358;QD=18.35;ReadPosRankSum=3.535;SB=-9.234e+02 GT:AD:DP:GQ:PL 0/1:15,14:29:99:293,0,351 1/1:2,26:28:63:699,63,0 1/1:3,29:32:69:751,69,0 1/1:2,11:13:21:228,21,0 +chr19 12691185 rs7247513 C T 786.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.989;DB;DP=56;Dels=0.02;FS=4.868;HaplotypeScore=2.0025;MLEAC=5;MLEAF=0.625;MQ=28.87;MQ0=0;MQRankSum=-0.121;QD=14.05;ReadPosRankSum=0.416;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:45:502,45,0 0/1:12,6:18:99:159,0,333 0/1:9,6:15:99:152,0,216 0/1:5,1:6:19:19,0,68 +chr19 12882060 . G A 78.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.283;DP=22;Dels=0.00;FS=15.315;HaplotypeScore=1.2888;MLEAC=3;MLEAF=0.375;MQ=27.45;MQ0=0;MQRankSum=1.981;QD=4.39;ReadPosRankSum=1.189;SB=0.878 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,54 0/1:6,1:7:27:27,0,89 0/1:4,2:6:27:68,0,27 0/1:4,1:5:26:26,0,95 +chr19 12885523 . T G 186.34 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.740;DP=103;Dels=0.00;FS=29.717;HaplotypeScore=4.4382;MLEAC=2;MLEAF=0.250;MQ=33.31;MQ0=0;MQRankSum=-1.679;QD=3.73;ReadPosRankSum=1.625;SB=-2.183e+00 GT:AD:DP:GQ:PL 0/1:17,8:25:99:216,0,446 0/1:23,2:25:10:10,0,377 0/0:26,1:27:22:0,22,601 0/0:24,2:26:7:0,7,418 +chr19 12976184 . G C 68.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.019;DP=183;Dels=0.01;FS=2.233;HaplotypeScore=4.1417;MLEAC=2;MLEAF=0.250;MQ=34.07;MQ0=0;MQRankSum=-2.120;QD=0.80;ReadPosRankSum=2.219;SB=-5.355e-02 GT:AD:DP:GQ:PL 0/1:39,4:44:25:25,0,786 0/0:49,1:50:96:0,96,1065 0/0:43,2:46:50:0,50,1194 0/1:37,5:42:85:85,0,696 +chr19 12984039 . G A 265.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.470;DP=49;Dels=0.02;FS=2.981;HaplotypeScore=0.9312;MLEAC=4;MLEAF=0.500;MQ=26.28;MQ0=0;MQRankSum=-0.814;QD=5.42;ReadPosRankSum=3.041;SB=-5.640e-02 GT:AD:DP:GQ:PL 0/1:8,6:14:99:138,0,163 0/1:8,4:12:51:51,0,141 0/1:8,4:12:99:103,0,99 0/1:8,2:10:16:16,0,77 +chr19 12995920 . T C 45.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.342;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.8380;MLEAC=3;MLEAF=0.375;MQ=19.24;MQ0=0;MQRankSum=1.435;QD=2.05;ReadPosRankSum=0.602;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:26:26,0,56 0/1:7,2:9:13:42,0,13 0/1:6,2:8:18:18,0,51 0/0:4,0:4:3:0,3,23 +chr19 13030125 rs141094842 C G 121.47 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.222;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.6736;MLEAC=7;MLEAF=0.875;MQ=19.63;MQ0=0;MQRankSum=1.288;QD=4.67;ReadPosRankSum=-0.844;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,4:7:6:60,6,0 0/1:3,2:5:16:52,0,16 1/1:8,1:9:3:23,3,0 1/1:4,1:5:3:27,3,0 +chr19 13035823 . G A 64.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.209;DP=117;Dels=0.01;FS=62.408;HaplotypeScore=6.5905;MLEAC=2;MLEAF=0.250;MQ=31.15;MQ0=0;MQRankSum=-1.550;QD=1.13;ReadPosRankSum=1.114;SB=-6.586e-01 GT:AD:DP:GQ:PL 0/1:24,4:28:30:30,0,646 0/1:24,4:28:76:76,0,500 0/0:32,0:32:63:0,63,790 0/0:28,0:28:57:0,57,651 +chr19 13039620 . C G 809.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.228;DP=126;Dels=0.01;FS=18.700;HaplotypeScore=11.2608;MLEAC=4;MLEAF=0.500;MQ=27.94;MQ0=0;MQRankSum=-0.292;QD=6.43;ReadPosRankSum=-0.494;SB=-1.020e+02 GT:AD:DP:GQ:PL 0/1:18,14:32:99:343,0,215 0/1:21,8:29:99:199,0,275 0/1:30,6:36:99:103,0,361 0/1:20,8:28:99:207,0,198 +chr19 13355900 rs16039 T G 87.09 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.424;DB;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=2.7754;MLEAC=5;MLEAF=0.625;MQ=19.82;MQ0=0;MQRankSum=1.369;QD=6.70;ReadPosRankSum=-0.555;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,26 1/1:4,2:6:6:73,6,0 0/1:2,2:4:19:24,0,19 1/1:1,2:3:3:33,3,0 +chr19 13394137 . T G 109.33 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.422;DP=135;Dels=0.01;FS=38.944;HaplotypeScore=4.4411;MLEAC=1;MLEAF=0.125;MQ=30.36;MQ0=0;MQRankSum=0.763;QD=1.50;ReadPosRankSum=-0.775;SB=-6.652e+00 GT:AD:DP:GQ:PL 0/0:25,1:27:24:0,24,524 0/0:34,0:34:69:0,69,752 0/1:43,2:45:1:1,0,639 0/1:22,6:28:99:144,0,291 +chr19 13443770 rs16008 T C 3228.29 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.046;DB;DP=118;Dels=0.04;FS=9.274;HaplotypeScore=4.0044;MLEAC=7;MLEAF=0.875;MQ=33.03;MQ0=0;MQRankSum=-0.111;QD=27.36;ReadPosRankSum=2.861;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:78:950,78,0 0/1:11,17:29:99:491,0,292 1/1:2,28:31:53:1006,53,0 1/1:1,25:26:72:826,72,0 +chr19 13862746 . T G 265.49 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.071;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7113;MLEAC=7;MLEAF=0.875;MQ=24.21;MQ0=0;MQRankSum=1.115;QD=13.97;ReadPosRankSum=1.434;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:9:106,9,0 0/1:1,4:5:14:45,0,14 1/1:2,3:5:6:57,6,0 1/1:1,3:4:9:100,9,0 +chr19 13867124 . C T 31.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.710;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.5533;MLEAC=1;MLEAF=0.125;MQ=27.05;MQ0=0;MQRankSum=-0.479;QD=2.07;ReadPosRankSum=-0.314;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,1:8:12:0,12,135 0/0:21,0:21:36:0,36,391 0/1:11,4:15:67:67,0,192 0/0:16,0:16:24:0,24,253 +chr19 13885309 rs1128749 C T 497.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.262;DB;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.0400;MLEAC=4;MLEAF=0.500;MQ=33.72;MQ0=0;MQRankSum=1.449;QD=14.64;ReadPosRankSum=0.428;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,10:13:30:376,30,0 0/0:8,0:8:24:0,24,272 0/1:5,4:9:99:124,0,152 0/1:10,2:12:46:46,0,263 +chr19 14023173 . C G 45.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.454;DP=53;Dels=0.00;FS=28.183;HaplotypeScore=1.5515;MLEAC=2;MLEAF=0.250;MQ=33.31;MQ0=0;MQRankSum=-1.152;QD=1.52;ReadPosRankSum=-1.252;SB=1.97 GT:AD:DP:GQ:PL 0/1:11,3:14:60:60,0,323 0/0:11,1:12:4:0,4,260 0/0:11,0:11:21:0,21,271 0/1:14,2:16:26:26,0,297 +chr19 14028967 . G C 51.07 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.550;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.6577;MLEAC=4;MLEAF=0.500;MQ=25.95;MQ0=0;MQRankSum=-0.250;QD=2.84;ReadPosRankSum=-0.650;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,36 0/1:6,1:7:22:22,0,123 0/1:7,1:8:12:12,0,128 1/1:1,2:3:6:60,6,0 +chr19 14150255 . G T 35.75 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.149;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=37.24;MQ0=0;MQRankSum=-2.327;QD=0.92;ReadPosRankSum=-2.921;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,1:22:12:0,12,537 0/1:13,2:15:29:29,0,336 0/0:26,0:26:60:0,60,805 0/1:21,3:24:48:48,0,457 +chr19 14161666 . C T 539.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.280;DP=70;Dels=0.00;FS=36.955;HaplotypeScore=6.2957;MLEAC=4;MLEAF=0.500;MQ=29.42;MQ0=0;MQRankSum=-2.367;QD=7.71;ReadPosRankSum=1.960;SB=-2.224e-03 GT:AD:DP:GQ:PL 0/1:14,3:17:68:68,0,272 0/1:11,6:17:62:140,0,62 0/1:6,8:14:80:219,0,80 0/1:14,7:22:99:155,0,217 +chr19 14200297 . T G 38.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.210;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3334;MLEAC=4;MLEAF=0.500;MQ=29.19;MQ0=0;MQRankSum=-0.490;QD=0.59;ReadPosRankSum=1.704;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,1:19:7:7,0,240 0/1:17,2:19:22:22,0,133 0/1:12,2:14:46:46,0,80 0/1:12,1:13:4:4,0,146 +chr19 14217646 . A G 283.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.549;DP=105;Dels=0.00;FS=33.556;HaplotypeScore=3.3482;MLEAC=3;MLEAF=0.375;MQ=23.74;MQ0=0;MQRankSum=0.847;QD=3.46;ReadPosRankSum=2.135;SB=0.578 GT:AD:DP:GQ:PL 0/1:15,7:22:99:111,0,267 0/1:22,4:26:58:58,0,306 0/1:26,7:34:99:158,0,260 0/0:21,2:23:24:0,24,275 +chr19 14266107 . C A 84.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.664;DP=90;Dels=0.03;FS=0.000;HaplotypeScore=31.1543;MLEAC=3;MLEAF=0.375;MQ=18.98;MQ0=0;MQRankSum=-1.375;QD=1.27;ReadPosRankSum=2.241;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,6:25:56:56,0,73 0/0:20,3:23:15:0,15,121 0/1:14,4:18:45:45,0,48 0/1:15,5:21:27:27,0,120 +chr19 14269153 . C A 86.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.091;DP=68;Dels=0.00;FS=24.086;HaplotypeScore=11.2687;MLEAC=4;MLEAF=0.500;MQ=21.95;MQ0=0;MQRankSum=0.838;QD=1.27;ReadPosRankSum=-0.212;SB=-2.790e+00 GT:AD:DP:GQ:PL 0/1:12,1:13:7:7,0,126 0/1:15,3:18:11:11,0,120 0/1:17,3:20:53:53,0,239 0/1:14,3:17:57:57,0,106 +chr19 14674533 . T C 37.53 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.940;DP=26;Dels=0.04;FS=8.822;HaplotypeScore=2.4688;MLEAC=3;MLEAF=0.375;MQ=24.08;MQ0=0;MQRankSum=0.045;QD=1.98;ReadPosRankSum=-1.567;SB=-1.693e+00 GT:AD:DP:GQ:PL 0/0:7,0:7:12:0,12,133 0/1:5,1:6:12:12,0,76 0/1:4,2:6:46:46,0,52 0/1:5,1:6:22:22,0,48 +chr19 14758168 rs34226397 G A 447.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.056;DB;DP=105;Dels=0.00;FS=2.294;HaplotypeScore=0.4908;MLEAC=1;MLEAF=0.125;MQ=36.70;MQ0=0;MQRankSum=-2.452;QD=14.93;ReadPosRankSum=0.953;SB=-1.151e-02 GT:AD:DP:GQ:PL 0/0:32,0:32:84:0,84,1116 0/1:15,15:30:99:484,0,436 0/0:30,0:30:87:0,87,1148 0/0:13,0:13:36:0,36,475 +chr19 14826861 . A G 245.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.878;DP=110;Dels=0.00;FS=4.708;HaplotypeScore=2.2064;MLEAC=3;MLEAF=0.375;MQ=31.62;MQ0=0;MQRankSum=-0.128;QD=3.00;ReadPosRankSum=-0.176;SB=-1.176e-02 GT:AD:DP:GQ:PL 0/1:26,3:29:45:45,0,405 0/1:25,7:32:99:153,0,345 0/0:27,1:28:54:0,54,615 0/1:17,4:21:91:91,0,325 +chr19 14876174 . C G 32.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.078;DP=114;Dels=0.01;FS=1.891;HaplotypeScore=5.7681;MLEAC=1;MLEAF=0.125;MQ=23.23;MQ0=0;MQRankSum=0.384;QD=1.50;ReadPosRankSum=-2.296;SB=-9.010e+00 GT:AD:DP:GQ:PL 0/0:27,0:27:39:0,39,417 0/0:30,1:31:30:0,30,480 0/0:34,0:34:51:0,51,554 0/1:17,4:21:69:69,0,230 +chr19 14910571 . G C 37.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.441;DP=185;Dels=0.01;FS=55.035;HaplotypeScore=11.2074;MLEAC=3;MLEAF=0.375;MQ=13.31;MQ0=0;MQRankSum=2.068;QD=0.46;ReadPosRankSum=1.241;SB=2.60 GT:AD:DP:GQ:PL 0/0:45,1:46:2:0,2,215 0/0:54,1:56:12:0,12,119 0/1:39,3:42:53:53,0,108 1/1:35,4:39:3:26,3,0 +chr19 14997907 rs10409376 C T 652.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=4.756;DB;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.125;MQ=35.93;MQ0=0;MQRankSum=2.595;QD=21.06;ReadPosRankSum=0.889;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:30,0:30:81:0,81,985 0/1:12,19:31:99:689,0,325 0/0:31,1:32:78:0,78,956 0/0:18,0:18:48:0,48,575 +chr19 15226025 . G T 77.52 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.918;DP=75;Dels=0.03;FS=1.885;HaplotypeScore=8.6705;MLEAC=4;MLEAF=0.500;MQ=30.26;MQ0=0;MQRankSum=-1.258;QD=1.03;ReadPosRankSum=1.546;SB=-1.730e+01 GT:AD:DP:GQ:PL 0/1:15,1:16:10:10,0,197 0/1:15,3:18:64:64,0,147 0/1:20,1:21:3:3,0,199 0/1:16,2:18:41:41,0,129 +chr19 15226970 rs2074262 G A 2230.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.605;DB;DP=85;Dels=0.01;FS=7.677;HaplotypeScore=1.4703;MLEAC=8;MLEAF=1.00;MQ=25.45;MQ0=0;MQRankSum=1.690;QD=26.25;ReadPosRankSum=-1.141;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:57:598,57,0 1/1:0,19:19:54:566,54,0 1/1:2,22:24:63:627,63,0 1/1:1,19:20:51:479,51,0 +chr19 15234388 . C T 30.11 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.678;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=15.3018;MLEAC=2;MLEAF=0.250;MQ=23.55;MQ0=0;MQRankSum=0.850;QD=0.73;ReadPosRankSum=-0.382;SB=-1.626e+00 GT:AD:DP:GQ:PL 0/1:17,1:18:2:2,0,225 0/0:25,1:26:21:0,21,212 0/1:20,3:23:63:63,0,212 0/0:21,1:22:0:0,0,259 +chr19 15273248 rs4809029 A C 946.10 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.898;DB;DP=43;Dels=0.00;FS=16.335;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=25.61;MQ0=0;MQRankSum=4.129;QD=22.00;ReadPosRankSum=2.550;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,8:9:18:197,18,0 1/1:1,7:8:18:213,18,0 1/1:2,15:17:42:451,42,0 1/1:3,6:9:12:124,12,0 +chr19 15302965 . C T 157.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.401;DP=37;Dels=0.00;FS=12.231;HaplotypeScore=11.3403;MLEAC=3;MLEAF=0.500;MQ=20.84;MQ0=0;MQRankSum=0.208;QD=4.49;ReadPosRankSum=1.868;SB=-2.045e+00 GT:AD:DP:GQ:PL 0/1:12,3:15:65:65,0,88 0/1:6,5:11:60:60,0,87 ./. 0/1:6,3:9:56:71,0,56 +chr19 15341774 . T G 54.99 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.892;DP=172;Dels=0.00;FS=59.819;HaplotypeScore=1.2978;MLEAC=2;MLEAF=0.250;MQ=35.65;MQ0=0;MQRankSum=-1.095;QD=0.66;ReadPosRankSum=-0.883;SB=-1.276e+00 GT:AD:DP:GQ:PL 0/0:44,1:45:70:0,70,1268 0/0:41,3:44:8:0,8,934 0/1:44,5:49:45:45,0,1062 0/1:29,4:34:51:51,0,804 +chr19 15366073 . A G 111.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.813;DP=65;Dels=0.02;FS=2.433;HaplotypeScore=1.4048;MLEAC=2;MLEAF=0.250;MQ=28.85;MQ0=0;MQRankSum=-0.239;QD=3.60;ReadPosRankSum=1.578;SB=0.102 GT:AD:DP:GQ:PL 0/0:21,0:21:21:0,21,261 0/1:12,2:14:49:49,0,86 0/0:12,0:12:18:0,18,211 0/1:13,4:17:99:104,0,218 +chr19 15511781 . G C 133.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.559;DP=140;Dels=0.01;FS=61.671;HaplotypeScore=4.3924;MLEAC=3;MLEAF=0.375;MQ=35.45;MQ0=0;MQRankSum=-3.295;QD=1.35;ReadPosRankSum=-0.252;SB=-2.902e+00 GT:AD:DP:GQ:PL 0/1:27,3:30:2:2,0,789 0/1:27,5:32:62:62,0,840 0/0:41,0:41:99:0,99,1205 0/1:29,6:35:99:110,0,750 +chr19 15562604 . G C 348.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.762;DP=86;Dels=0.03;FS=93.988;HaplotypeScore=5.5944;MLEAC=4;MLEAF=0.500;MQ=31.10;MQ0=0;MQRankSum=-2.691;QD=4.05;ReadPosRankSum=1.784;SB=0.957 GT:AD:DP:GQ:PL 0/1:13,7:20:99:176,0,334 0/1:16,5:22:93:93,0,275 0/1:18,3:21:21:21,0,410 0/1:16,4:20:99:101,0,210 +chr19 15795842 rs2018030 C T 969.10 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.278;DB;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.4081;MLEAC=8;MLEAF=1.00;MQ=26.47;MQ0=0;MQRankSum=-0.779;QD=16.15;ReadPosRankSum=0.490;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,11:16:0:218,0,0 1/1:4,14:18:36:384,36,0 1/1:5,10:15:24:231,24,0 1/1:5,6:11:18:174,18,0 +chr19 15807305 rs688755 T C 75.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.668;DB;DP=240;Dels=0.01;FS=2.512;HaplotypeScore=1.4427;MLEAC=2;MLEAF=0.250;MQ=20.46;MQ0=0;MQRankSum=-8.781;QD=0.57;ReadPosRankSum=0.144;SB=-1.911e+01 GT:AD:DP:GQ:PL 0/0:35,18:53:12:0,12,454 0/1:44,22:66:63:63,0,463 0/0:38,15:53:6:0,6,471 0/1:48,17:65:53:53,0,671 +chr19 16021413 . G A 61.24 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.577;DP=37;Dels=0.00;FS=2.973;HaplotypeScore=4.2139;MLEAC=4;MLEAF=0.500;MQ=19.86;MQ0=0;MQRankSum=1.461;QD=2.27;ReadPosRankSum=-0.713;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:25:28,0,25 0/0:10,0:10:6:0,6,49 0/1:7,2:9:46:46,0,52 1/1:6,1:7:3:30,3,0 +chr19 16025488 . A G 112.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.037;DP=150;Dels=0.00;FS=49.802;HaplotypeScore=1.0316;MLEAC=4;MLEAF=0.500;MQ=25.26;MQ0=0;MQRankSum=2.237;QD=0.75;ReadPosRankSum=0.558;SB=-3.021e-02 GT:AD:DP:GQ:PL 0/1:32,3:35:27:27,0,238 0/1:36,6:42:60:60,0,424 0/1:38,3:41:25:25,0,575 0/1:28,4:32:43:43,0,425 +chr19 16060233 . C A 169.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.231;DP=90;Dels=0.03;FS=2.422;HaplotypeScore=12.9258;MLEAC=4;MLEAF=0.500;MQ=22.03;MQ0=0;MQRankSum=2.288;QD=1.88;ReadPosRankSum=-0.593;SB=-1.187e-02 GT:AD:DP:GQ:PL 0/1:28,3:31:46:46,0,179 0/1:14,1:15:6:6,0,112 0/1:17,4:22:73:73,0,103 0/1:15,4:19:86:86,0,163 +chr19 16060658 rs11880184 A G 200.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.664;DB;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=0.6709;MLEAC=3;MLEAF=0.375;MQ=14.10;MQ0=0;MQRankSum=-0.063;QD=1.42;ReadPosRankSum=1.430;SB=-2.385e+01 GT:AD:DP:GQ:PL 0/0:56,0:56:21:0,21,246 0/1:33,24:57:43:43,0,93 0/1:34,20:54:99:122,0,147 0/1:17,13:30:79:79,0,101 +chr19 16136405 rs4808423 C T 409.63 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.826;DB;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.9208;MLEAC=8;MLEAF=1.00;MQ=26.34;MQ0=0;MQRankSum=1.985;QD=21.56;ReadPosRankSum=1.191;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,5:5:12:159,12,0 1/1:2,4:6:12:126,12,0 1/1:3,3:6:9:94,9,0 1/1:0,2:2:6:69,6,0 +chr19 16514501 . G C 130.83 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.827;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=22.5364;MLEAC=5;MLEAF=0.625;MQ=18.43;MQ0=0;MQRankSum=2.229;QD=2.11;ReadPosRankSum=-2.082;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,2:17:18:18,0,48 0/1:12,1:13:16:19,0,16 0/1:12,2:14:14:61,0,14 1/1:12,4:16:9:77,9,0 +chr19 16551761 . C G 46.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.141;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=6.7752;MLEAC=3;MLEAF=0.375;MQ=33.12;MQ0=0;MQRankSum=-1.058;QD=0.37;ReadPosRankSum=-0.792;SB=1.36 GT:AD:DP:GQ:PL 0/1:37,3:40:38:38,0,496 0/0:47,3:51:3:0,3,869 0/1:41,4:45:27:27,0,626 0/1:37,3:41:23:23,0,524 +chr19 16606914 . C G 96.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.163;DP=22;Dels=0.00;FS=21.553;HaplotypeScore=3.1276;MLEAC=3;MLEAF=0.375;MQ=25.99;MQ0=0;MQRankSum=1.247;QD=4.84;ReadPosRankSum=-0.054;SB=2.67 GT:AD:DP:GQ:PL 0/1:3,3:6:50:57,0,50 0/1:4,1:5:17:32,0,17 0/1:7,2:9:49:49,0,100 0/0:2,0:2:3:0,3,35 +chr19 16611892 . C G 83.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.749;DP=219;Dels=0.01;FS=30.607;HaplotypeScore=11.8696;MLEAC=2;MLEAF=0.250;MQ=32.19;MQ0=0;MQRankSum=-3.933;QD=0.78;ReadPosRankSum=0.620;SB=-1.575e+00 GT:AD:DP:GQ:PL 0/0:58,2:60:60:0,60,1191 0/1:40,7:47:79:79,0,643 0/0:49,3:52:21:0,21,940 0/1:52,6:58:46:46,0,983 +chr19 16623857 . G C 36.42 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.577;DP=46;Dels=0.02;FS=1.830;HaplotypeScore=2.9553;MLEAC=1;MLEAF=0.125;MQ=29.64;MQ0=0;MQRankSum=-0.377;QD=3.04;ReadPosRankSum=0.628;SB=-4.050e+01 GT:AD:DP:GQ:PL 0/0:7,0:7:12:0,12,126 0/0:8,0:8:15:0,15,132 0/0:16,2:19:6:0,6,288 0/1:8,3:11:72:72,0,73 +chr19 16682265 . G T 30.28 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.002;DP=88;Dels=0.00;FS=27.142;HaplotypeScore=6.9137;MLEAC=2;MLEAF=0.250;MQ=28.35;MQ0=0;MQRankSum=0.089;QD=0.56;ReadPosRankSum=-1.201;SB=-4.690e+01 GT:AD:DP:GQ:PL 0/0:16,1:17:2:0,2,245 0/1:22,3:26:1:1,0,389 0/1:25,3:28:64:64,0,319 0/0:17,0:17:27:0,27,260 +chr19 16687119 . G C 88.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.447;DP=63;Dels=0.02;FS=7.676;HaplotypeScore=5.1367;MLEAC=3;MLEAF=0.375;MQ=30.47;MQ0=0;MQRankSum=0.171;QD=1.98;ReadPosRankSum=-0.546;SB=0.052 GT:AD:DP:GQ:PL 0/1:10,1:11:18:18,0,189 0/0:18,0:18:24:0,24,287 0/1:17,2:19:41:41,0,316 0/1:11,3:14:73:73,0,138 +chr19 17015105 . A C 415.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.383;DP=84;Dels=0.00;FS=15.284;HaplotypeScore=2.6088;MLEAC=4;MLEAF=0.500;MQ=33.72;MQ0=0;MQRankSum=-2.176;QD=4.95;ReadPosRankSum=0.266;SB=-6.534e-02 GT:AD:DP:GQ:PL 0/1:12,6:18:99:165,0,323 0/1:16,4:20:94:94,0,278 0/1:23,7:30:99:182,0,435 0/1:14,2:16:17:17,0,363 +chr19 17039663 rs60052787 T A 89.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.129;DB;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=3.7215;MLEAC=3;MLEAF=0.375;MQ=26.57;MQ0=0;MQRankSum=2.153;QD=1.62;ReadPosRankSum=2.249;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:21:0,21,195 0/1:12,4:16:61:61,0,255 0/1:11,3:15:56:56,0,120 0/1:22,2:24:15:15,0,289 +chr19 17160691 . A T 105.18 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.508;DP=225;Dels=0.00;FS=110.687;HaplotypeScore=12.3872;MLEAC=1;MLEAF=0.125;MQ=32.93;MQ0=0;MQRankSum=-2.996;QD=2.02;ReadPosRankSum=-0.345;SB=-9.573e+00 GT:AD:DP:GQ:PL 0/0:58,6:64:8:0,8,1675 0/1:43,9:52:99:141,0,1090 0/0:60,3:63:66:0,66,1788 0/0:43,3:46:42:0,42,1175 +chr19 17169300 . G T 67.07 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.150;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1972;MLEAC=3;MLEAF=0.375;MQ=28.39;MQ0=0;MQRankSum=-2.473;QD=1.00;ReadPosRankSum=3.078;SB=-3.072e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:30:30,0,441 0/1:19,3:23:56:56,0,251 0/0:18,2:20:13:0,13,411 0/1:18,5:24:24:24,0,473 +chr19 17286438 rs8113494 A T 414.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.494;DB;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7182;MLEAC=3;MLEAF=0.375;MQ=33.62;MQ0=0;MQRankSum=-1.746;QD=9.43;ReadPosRankSum=0.325;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,6:14:99:195,0,100 0/0:8,0:8:24:0,24,319 0/1:11,6:17:99:195,0,229 0/1:10,3:13:68:68,0,288 +chr19 17327045 . G T 308.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.406;DP=143;Dels=0.00;FS=130.859;HaplotypeScore=3.2772;MLEAC=4;MLEAF=0.500;MQ=37.37;MQ0=0;MQRankSum=-3.493;QD=2.16;ReadPosRankSum=-2.053;SB=1.783e-03 GT:AD:DP:GQ:PL 0/1:24,5:30:99:101,0,734 0/1:26,8:34:99:169,0,553 0/1:33,3:36:30:30,0,913 0/1:39,4:43:51:51,0,957 +chr19 17405176 . T A 37.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.983;DP=78;Dels=0.04;FS=0.000;HaplotypeScore=12.8193;MLEAC=1;MLEAF=0.125;MQ=21.03;MQ0=0;MQRankSum=0.013;QD=1.02;ReadPosRankSum=-0.828;SB=-1.146e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:2:2,0,145 0/0:20,2:22:42:0,42,407 0/1:16,4:20:72:72,0,237 0/0:18,0:18:9:0,9,76 +chr19 17451736 rs75893526 C T 110.04 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.390;DB;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=0.2483;MLEAC=1;MLEAF=0.125;MQ=30.41;MQ0=0;MQRankSum=-1.171;QD=15.72;ReadPosRankSum=-0.325;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,5:7:24:146,0,24 0/0:6,0:6:18:0,18,212 0/0:10,0:10:21:0,21,237 0/0:6,0:6:18:0,18,223 +chr19 17487869 . G T 43.21 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.439;DP=86;Dels=0.05;FS=17.775;HaplotypeScore=7.3278;MLEAC=2;MLEAF=0.250;MQ=32.88;MQ0=0;MQRankSum=0.667;QD=0.96;ReadPosRankSum=0.252;SB=1.37 GT:AD:DP:GQ:PL 0/0:20,1:21:7:0,7,506 0/1:20,3:23:55:55,0,362 0/0:18,1:20:15:0,15,464 0/1:16,2:18:29:29,0,248 +chr19 17488155 . C G 86.43 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.928;DP=65;Dels=0.05;FS=0.000;HaplotypeScore=15.7780;MLEAC=5;MLEAF=0.625;MQ=18.43;MQ0=0;MQRankSum=2.577;QD=1.33;ReadPosRankSum=-0.474;SB=-1.008e-02 GT:AD:DP:GQ:PL 1/1:10,2:12:6:49,6,0 0/1:20,1:21:28:28,0,56 0/1:14,2:16:15:15,0,69 0/1:11,2:13:38:38,0,61 +chr19 17641754 . C G 50.25 . AC=3;AF=0.750;AN=4;BaseQRankSum=1.866;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=13.9642;MLEAC=3;MLEAF=0.750;MQ=19.76;MQ0=0;MQRankSum=0.633;QD=3.59;ReadPosRankSum=-0.633;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 0/1:8,3:12:54:54,0,54 1/1:1,1:2:3:31,3,0 +chr19 17732687 . G C 95.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.101;DP=227;Dels=0.00;FS=25.834;HaplotypeScore=12.9233;MLEAC=2;MLEAF=0.250;MQ=34.84;MQ0=0;MQRankSum=-6.271;QD=0.82;ReadPosRankSum=-1.137;SB=-3.028e-01 GT:AD:DP:GQ:PL 0/0:47,3:50:62:0,62,1257 0/0:57,2:59:77:0,77,1513 0/1:43,6:49:17:17,0,1127 0/1:56,11:68:99:120,0,1235 +chr19 17744075 rs71162163 G GC 281.95 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.010;DB;DP=122;FS=0.000;HaplotypeScore=13.3616;MLEAC=1;MLEAF=0.125;MQ=33.36;MQ0=0;MQRankSum=-0.321;QD=9.10;RPA=4,5;RU=C;ReadPosRankSum=0.414;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:20,11:30:99:327,0,530 0/0:32,0:31:90:0,90,1153 0/0:31,0:30:78:0,78,999 0/0:26,0:24:66:0,66,845 +chr19 17785506 . C G 696.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.550;DP=91;Dels=0.00;FS=182.488;HaplotypeScore=6.1041;MLEAC=4;MLEAF=0.500;MQ=32.65;MQ0=0;MQRankSum=-1.508;QD=7.65;ReadPosRankSum=-1.315;SB=-8.115e-01 GT:AD:DP:GQ:PL 0/1:12,9:21:99:257,0,200 0/1:14,8:22:99:196,0,312 0/1:21,6:27:99:135,0,534 0/1:15,6:21:99:151,0,186 +chr19 17845153 . G T 30.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.712;DP=53;Dels=0.00;FS=8.939;HaplotypeScore=3.6285;MLEAC=3;MLEAF=0.375;MQ=26.33;MQ0=0;MQRankSum=0.370;QD=0.69;ReadPosRankSum=-0.199;SB=1.52 GT:AD:DP:GQ:PL 0/0:9,0:9:6:0,6,78 0/1:13,1:14:4:4,0,186 0/1:13,1:14:13:13,0,182 0/1:14,2:16:53:53,0,118 +chr19 18085035 . T G 64.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.137;DP=65;Dels=0.03;FS=56.697;HaplotypeScore=7.3327;MLEAC=2;MLEAF=0.250;MQ=33.69;MQ0=0;MQRankSum=-2.717;QD=1.91;ReadPosRankSum=0.115;SB=-3.949e+00 GT:AD:DP:GQ:PL 0/1:9,4:13:65:65,0,291 0/0:16,2:18:3:0,3,348 0/1:17,3:20:40:40,0,511 0/0:11,1:12:27:0,27,330 +chr19 18183148 . C A 51.71 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.465;DP=62;Dels=0.00;FS=12.634;HaplotypeScore=6.6813;MLEAC=1;MLEAF=0.125;MQ=30.37;MQ0=0;MQRankSum=0.057;QD=3.69;ReadPosRankSum=-0.201;SB=-5.426e+00 GT:AD:DP:GQ:PL 0/0:19,0:19:42:0,42,462 0/0:14,0:14:36:0,36,405 0/0:14,1:15:2:0,2,290 0/1:10,4:14:87:87,0,157 +chr19 18239307 . T C 77.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.144;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=3.3092;MLEAC=4;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=1.517;QD=1.97;ReadPosRankSum=0.210;SB=-3.641e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:10:10,0,111 0/1:5,1:6:17:17,0,58 0/1:7,2:9:48:48,0,84 0/1:14,2:16:44:44,0,97 +chr19 18258342 . C G 31.84 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.775;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=7.3523;MLEAC=2;MLEAF=0.250;MQ=25.26;MQ0=0;MQRankSum=0.114;QD=0.59;ReadPosRankSum=-1.117;SB=0.043 GT:AD:DP:GQ:PL 0/1:23,3:26:55:55,0,258 0/0:20,0:20:24:0,24,233 0/1:26,2:28:18:18,0,271 0/0:27,0:27:18:0,18,215 +chr19 18288461 . C A 41.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.370;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7413;MLEAC=2;MLEAF=0.250;MQ=34.68;MQ0=0;MQRankSum=-2.142;QD=1.12;ReadPosRankSum=-0.316;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:30:0,30,330 0/1:20,3:23:39:39,0,473 0/0:21,0:21:54:0,54,619 0/1:11,3:14:44:44,0,226 +chr19 18288529 . G C 86.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.729;DP=105;Dels=0.00;FS=53.994;HaplotypeScore=0.4988;MLEAC=2;MLEAF=0.250;MQ=39.75;MQ0=0;MQRankSum=-1.549;QD=1.79;ReadPosRankSum=-0.605;SB=-2.150e+00 GT:AD:DP:GQ:PL 0/0:21,2:23:7:0,7,655 0/1:21,4:25:82:82,0,566 0/0:34,0:34:84:0,84,1139 0/1:20,3:23:45:45,0,580 +chr19 18308349 . G A 34.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.126;DP=74;Dels=0.04;FS=0.000;HaplotypeScore=13.2350;MLEAC=3;MLEAF=0.375;MQ=27.76;MQ0=0;MQRankSum=-0.833;QD=0.61;ReadPosRankSum=-0.102;SB=-8.863e-01 GT:AD:DP:GQ:PL 0/0:17,0:17:27:0,27,279 0/1:16,3:19:49:49,0,210 0/1:18,2:20:23:23,0,243 0/1:14,1:15:4:4,0,210 +chr19 18375235 . T C 48.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.304;DP=25;Dels=0.00;FS=4.993;HaplotypeScore=1.6811;MLEAC=3;MLEAF=0.375;MQ=28.85;MQ0=0;MQRankSum=-0.708;QD=2.68;ReadPosRankSum=-0.186;SB=0.103 GT:AD:DP:GQ:PL 0/1:5,1:6:29:29,0,69 0/1:4,2:6:47:47,0,105 0/1:4,2:6:15:15,0,85 0/0:7,0:7:15:0,15,171 +chr19 18378384 . A C 32.24 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.175;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.2883;MLEAC=1;MLEAF=0.125;MQ=30.78;MQ0=0;MQRankSum=-2.800;QD=1.34;ReadPosRankSum=-1.955;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:17,0:17:30:0,30,342 0/0:19,1:20:14:0,14,500 0/1:18,6:24:68:68,0,563 0/0:23,2:25:8:0,8,581 +chr19 18423406 . G A 37.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.347;DP=81;Dels=0.02;FS=21.663;HaplotypeScore=14.3704;MLEAC=3;MLEAF=0.375;MQ=25.71;MQ0=0;MQRankSum=0.842;QD=0.64;ReadPosRankSum=1.206;SB=3.26 GT:AD:DP:GQ:PL 0/1:12,1:13:13:13,0,154 0/1:15,2:17:38:38,0,187 0/1:26,2:28:29:29,0,322 0/0:20,0:21:9:0,9,118 +chr19 18557657 rs2303692 C T 615.48 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.478;DB;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.2426;MLEAC=3;MLEAF=0.375;MQ=34.36;MQ0=0;MQRankSum=-1.830;QD=15.78;ReadPosRankSum=0.948;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:33:0,33,441 1/1:4,10:14:2:315,2,0 0/1:5,8:13:99:267,0,118 0/1:9,3:12:77:77,0,206 +chr19 18709768 rs8108207 G A 68.97 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.507;DB;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=4.2455;MLEAC=4;MLEAF=0.500;MQ=24.77;MQ0=0;MQRankSum=0.638;QD=1.97;ReadPosRankSum=-2.689;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:10:10,0,133 0/1:9,3:12:52:52,0,129 0/1:7,1:8:20:20,0,140 0/1:4,2:6:29:29,0,61 +chr19 18710750 . A T 70.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.132;DP=27;Dels=0.00;FS=13.605;HaplotypeScore=2.4382;MLEAC=4;MLEAF=0.500;MQ=18.94;MQ0=0;MQRankSum=1.272;QD=3.22;ReadPosRankSum=0.921;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:8:20:20,0,34 0/1:5,2:7:31:37,0,31 0/0:4,1:5:3:0,3,41 1/1:5,2:7:6:57,6,0 +chr19 18779082 . T A 69.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.107;DP=46;Dels=0.00;FS=1.824;HaplotypeScore=7.3076;MLEAC=3;MLEAF=0.375;MQ=27.65;MQ0=0;MQRankSum=-2.973;QD=1.93;ReadPosRankSum=3.040;SB=-3.373e+01 GT:AD:DP:GQ:PL 0/1:7,1:8:9:9,0,137 0/1:8,3:12:58:58,0,96 0/1:13,3:16:44:44,0,230 0/0:10,0:10:6:0,6,79 +chr19 18779086 . G A 36.43 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.196;DP=52;Dels=0.02;FS=12.709;HaplotypeScore=9.6720;MLEAC=2;MLEAF=0.250;MQ=24.61;MQ0=0;MQRankSum=-1.137;QD=1.30;ReadPosRankSum=0.146;SB=2.80 GT:AD:DP:GQ:PL 0/0:7,0:7:6:0,6,69 0/0:16,0:16:12:0,12,129 0/1:11,4:16:46:46,0,170 0/1:9,2:12:31:31,0,85 +chr19 18779728 rs73533829 C T 40.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.758;DB;DP=77;Dels=0.00;FS=38.166;HaplotypeScore=9.6442;MLEAC=2;MLEAF=0.250;MQ=22.37;MQ0=0;MQRankSum=-0.528;QD=0.97;ReadPosRankSum=1.515;SB=-5.371e-01 GT:AD:DP:GQ:PL 0/0:17,2:19:5:0,5,238 0/1:12,5:17:42:42,0,203 0/1:22,3:25:39:39,0,330 0/0:16,0:16:9:0,9,97 +chr19 18860618 . G C 38.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.911;DP=134;Dels=0.02;FS=37.364;HaplotypeScore=15.9474;MLEAC=3;MLEAF=0.375;MQ=26.62;MQ0=0;MQRankSum=-0.381;QD=0.36;ReadPosRankSum=-2.082;SB=-4.295e+00 GT:AD:DP:GQ:PL 0/0:24,1:26:27:0,27,337 0/1:30,2:32:9:9,0,430 0/1:34,4:38:33:33,0,519 0/1:31,4:35:39:39,0,380 +chr19 18898422 . T C 53.37 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.565;DP=175;Dels=0.01;FS=66.140;HaplotypeScore=19.6101;MLEAC=1;MLEAF=0.125;MQ=30.81;MQ0=0;MQRankSum=-3.713;QD=1.52;ReadPosRankSum=1.613;SB=-4.936e+00 GT:AD:DP:GQ:PL 0/1:28,6:34:89:89,0,613 0/0:48,2:50:41:0,41,995 0/0:42,5:47:58:0,58,1180 0/0:37,6:43:5:0,5,737 +chr19 18963222 . G A 30.13 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.350;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.8658;MLEAC=2;MLEAF=0.250;MQ=24.84;MQ0=0;MQRankSum=0.350;QD=1.88;ReadPosRankSum=0.750;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,3:9:51:51,0,125 0/1:6,1:7:19:19,0,58 0/0:6,0:6:6:0,6,69 0/0:4,0:4:6:0,6,50 +chr19 18975021 . G A 100.27 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.288;DP=90;Dels=0.03;FS=7.409;HaplotypeScore=18.5991;MLEAC=4;MLEAF=0.500;MQ=26.29;MQ0=0;MQRankSum=-1.798;QD=1.52;ReadPosRankSum=1.752;SB=-1.156e+00 GT:AD:DP:GQ:PL 0/1:16,6:22:88:88,0,156 0/1:17,4:21:20:20,0,291 0/1:20,2:22:32:32,0,159 0/0:19,3:22:0:0,0,256 +chr19 19032648 . C A 66.30 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.384;DP=93;Dels=0.00;FS=37.172;HaplotypeScore=1.7273;MLEAC=1;MLEAF=0.125;MQ=33.23;MQ0=0;MQRankSum=0.260;QD=3.01;ReadPosRankSum=-0.752;SB=-6.813e+00 GT:AD:DP:GQ:PL 0/0:14,1:15:27:0,27,326 0/1:17,4:22:99:102,0,320 0/0:27,2:29:24:0,24,756 0/0:25,2:27:6:0,6,662 +chr19 19037053 rs2301661 T C 31.28 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.537;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.6339;MLEAC=3;MLEAF=0.375;MQ=28.09;MQ0=0;MQRankSum=1.182;QD=5.21;ReadPosRankSum=-0.537;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,1:3:32:32,0,37 0/1:2,1:3:26:38,0,26 0/0:5,0:5:3:0,3,44 0/0:3,0:3:3:0,3,43 +chr19 19049597 . G T 42.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.462;DP=42;Dels=0.00;FS=11.779;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.125;MQ=38.51;MQ0=0;MQRankSum=-1.516;QD=3.23;ReadPosRankSum=-0.325;SB=-6.016e+00 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,238 0/0:8,0:8:21:0,21,269 0/0:13,0:13:27:0,27,378 0/1:10,3:13:78:78,0,291 +chr19 19105366 . G T 39.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.923;DP=69;Dels=0.03;FS=9.445;HaplotypeScore=16.5697;MLEAC=4;MLEAF=0.500;MQ=21.84;MQ0=0;MQRankSum=0.961;QD=0.68;ReadPosRankSum=-2.663;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:16,3:19:6:60,6,0 0/1:19,1:20:14:14,0,102 0/1:15,1:17:10:10,0,121 0/0:11,0:11:9:0,9,88 +chr19 19153801 rs3214143 G GC 602.30 . AC=8;AF=1.00;AN=8;DB;DP=27;FS=0.000;HaplotypeScore=10.0933;MLEAC=8;MLEAF=1.00;MQ=27.90;MQ0=0;QD=22.31;RPA=2,3;RU=C;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:3,4:6:12:162,12,0 1/1:3,6:6:15:203,15,0 1/1:1,4:5:12:163,12,0 1/1:1,4:3:9:122,9,0 +chr19 19338484 . C A 119.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.060;DP=260;Dels=0.00;FS=78.141;HaplotypeScore=10.9276;MLEAC=3;MLEAF=0.375;MQ=33.26;MQ0=0;MQRankSum=-3.468;QD=0.60;ReadPosRankSum=-0.302;SB=-1.211e-02 GT:AD:DP:GQ:PL 0/1:59,7:66:49:49,0,1805 0/0:60,1:61:99:0,125,1900 0/1:65,8:73:72:72,0,1887 0/1:52,8:60:42:42,0,1389 +chr19 19412956 . T A 71.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.476;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=2.7838;MLEAC=4;MLEAF=0.500;MQ=25.41;MQ0=0;MQRankSum=-0.216;QD=0.96;ReadPosRankSum=-1.119;SB=-5.679e-02 GT:AD:DP:GQ:PL 0/1:14,3:17:22:22,0,267 0/1:22,2:24:16:16,0,336 0/1:13,2:15:23:23,0,169 0/1:15,3:18:53:53,0,255 +chr19 19627085 . C G 30.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.529;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6612;MLEAC=2;MLEAF=0.250;MQ=36.20;MQ0=0;MQRankSum=-0.895;QD=0.99;ReadPosRankSum=0.566;SB=-6.586e-03 GT:AD:DP:GQ:PL 0/0:15,0:15:24:0,24,325 0/1:13,2:16:44:44,0,177 0/1:13,2:15:28:28,0,315 0/0:12,0:12:27:0,27,308 +chr19 19747657 . T G 33.34 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.041;DP=29;Dels=0.03;FS=2.682;HaplotypeScore=6.0491;MLEAC=3;MLEAF=0.375;MQ=23.20;MQ0=0;MQRankSum=1.014;QD=1.96;ReadPosRankSum=0.203;SB=1.07 GT:AD:DP:GQ:PL 0/1:7,2:9:33:33,0,108 0/1:5,1:6:17:17,0,36 0/0:11,0:11:12:0,12,136 1/1:1,1:2:3:27,3,0 +chr19 20135217 . T C 137.13 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.655;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5259;MLEAC=4;MLEAF=0.500;MQ=26.35;MQ0=0;MQRankSum=3.890;QD=1.01;ReadPosRankSum=3.372;SB=-2.808e-01 GT:AD:DP:GQ:PL 0/1:33,2:35:29:29,0,240 0/1:33,2:35:8:8,0,396 0/1:44,4:48:27:27,0,464 0/1:14,4:18:99:115,0,131 +chr19 20807053 rs112700497 T G 245.58 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.882;DB;DP=149;Dels=0.00;FS=3.229;HaplotypeScore=0.5761;MLEAC=5;MLEAF=0.625;MQ=10.73;MQ0=0;MQRankSum=3.628;QD=1.65;ReadPosRankSum=1.221;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:27,16:43:18:32,0,18 1/1:32,15:47:12:123,12,0 0/1:29,18:47:9:110,0,9 0/1:10,2:12:25:25,0,27 +chr19 20808149 rs1991528 A G 629.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.935;DB;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=2.3362;MLEAC=4;MLEAF=0.500;MQ=16.50;MQ0=0;MQRankSum=3.644;QD=4.17;ReadPosRankSum=1.616;SB=-2.819e+02 GT:AD:DP:GQ:PL 0/1:34,11:45:97:186,0,97 0/1:24,16:40:80:199,0,80 0/1:33,14:47:99:207,0,126 0/1:7,10:18:44:80,0,44 +chr19 21116987 . T A 100.90 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.930;DP=166;Dels=0.02;FS=5.486;HaplotypeScore=18.1840;MLEAC=5;MLEAF=0.625;MQ=12.84;MQ0=0;MQRankSum=-0.172;QD=0.61;ReadPosRankSum=6.662;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:32,17:49:90:90,0,198 0/1:37,11:48:12:12,0,68 0/1:31,9:40:17:17,0,17 1/1:19,7:26:3:24,3,0 +chr19 21144334 . C T 58.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.645;DP=79;Dels=0.00;FS=29.049;HaplotypeScore=7.2120;MLEAC=4;MLEAF=0.500;MQ=14.57;MQ0=0;MQRankSum=2.533;QD=0.75;ReadPosRankSum=-0.691;SB=-9.762e-02 GT:AD:DP:GQ:PL 0/1:19,1:20:17:17,0,46 0/1:19,2:21:13:13,0,35 0/1:19,2:21:45:52,0,45 0/1:15,2:17:19:19,0,42 +chr19 21216819 . C A 85.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.798;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.8912;MLEAC=3;MLEAF=0.375;MQ=14.61;MQ0=0;MQRankSum=2.181;QD=0.70;ReadPosRankSum=-0.518;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:44,4:48:42:42,0,109 0/1:37,3:40:45:45,0,82 0/1:30,3:34:41:41,0,131 0/0:15,1:16:12:0,12,89 +chr19 21510635 . G A 65.47 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.120;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=13.56;MQ0=0;MQRankSum=2.308;QD=1.36;ReadPosRankSum=-1.898;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:13:57,0,13 0/1:15,2:17:19:19,0,38 ./. 1/1:9,1:10:3:28,3,0 +chr19 21564001 rs2937174 A G 494.30 . AC=6;AF=0.750;AN=8;BaseQRankSum=4.591;DB;DP=100;Dels=0.04;FS=29.213;HaplotypeScore=3.7340;MLEAC=7;MLEAF=0.875;MQ=17.41;MQ0=0;MQRankSum=0.616;QD=4.94;ReadPosRankSum=2.430;SB=-2.456e+02 GT:AD:DP:GQ:PL 0/1:5,19:24:2:191,0,2 0/1:8,14:22:12:90,0,12 1/1:10,27:37:15:185,15,0 1/1:7,6:13:6:70,6,0 +chr19 21588053 . C T 100.36 . AC=6;AF=0.750;AN=8;BaseQRankSum=-2.338;DP=87;Dels=0.01;FS=2.330;HaplotypeScore=1.0804;MLEAC=6;MLEAF=0.750;MQ=14.49;MQ0=0;MQRankSum=3.521;QD=1.15;ReadPosRankSum=-2.123;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,1:21:17:32,0,17 0/1:25,3:28:58:58,0,114 1/1:17,2:19:3:27,3,0 1/1:16,2:18:3:25,3,0 +chr19 21817906 rs7259140 C T 135.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.691;DB;DP=21;Dels=0.00;FS=2.128;HaplotypeScore=0.2467;MLEAC=3;MLEAF=0.375;MQ=33.59;MQ0=0;MQRankSum=-0.536;QD=9.07;ReadPosRankSum=-0.701;SB=-2.828e+01 GT:AD:DP:GQ:PL 0/1:3,3:6:69:84,0,69 0/0:6,0:6:15:0,15,204 0/1:2,2:4:17:66,0,17 0/1:4,1:5:29:29,0,62 +chr19 21992945 . T A 63.78 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.014;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.2235;MLEAC=1;MLEAF=0.125;MQ=24.54;MQ0=0;MQRankSum=0.771;QD=7.09;ReadPosRankSum=1.582;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,4:9:99:99,0,121 0/0:10,0:11:18:0,18,202 0/0:9,0:9:9:0,9,80 0/0:4,0:4:3:0,3,36 +chr19 22379587 rs2360001 G T 55.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.203;DB;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.1284;MLEAC=2;MLEAF=0.250;MQ=22.53;MQ0=0;MQRankSum=-5.428;QD=0.69;ReadPosRankSum=2.372;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,16:39:28:28,0,285 0/1:22,19:41:69:69,0,306 0/0:42,0:42:63:0,63,722 0/0:29,0:29:42:0,42,490 +chr19 23869705 . G A 150.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.029;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.3464;MLEAC=3;MLEAF=0.375;MQ=23.17;MQ0=0;MQRankSum=1.605;QD=3.96;ReadPosRankSum=3.271;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,2:10:17:17,0,88 0/0:13,1:15:12:0,12,98 0/1:13,4:17:64:70,0,64 0/1:6,4:11:9:106,0,9 +chr19 23938423 . T A 84.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.646;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=3.1598;MLEAC=3;MLEAF=0.375;MQ=22.58;MQ0=0;MQRankSum=2.256;QD=1.12;ReadPosRankSum=0.407;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:18:0,18,195 0/1:23,2:25:43:43,0,154 0/1:26,2:29:37:37,0,153 0/1:18,3:21:48:48,0,67 +chr19 24014697 . A C 278.26 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.892;DP=54;Dels=0.00;FS=19.028;HaplotypeScore=1.4522;MLEAC=3;MLEAF=0.500;MQ=24.82;MQ0=0;MQRankSum=0.722;QD=5.25;ReadPosRankSum=3.894;SB=-2.886e+00 GT:AD:DP:GQ:PL 0/1:9,9:19:47:158,0,47 0/1:16,3:19:74:74,0,100 0/1:10,5:15:85:85,0,115 ./. +chr19 24183653 rs112799300 T C 413.40 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.254;DB;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=19.19;MQ0=0;MQRankSum=2.154;QD=16.54;ReadPosRankSum=0.150;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,5:5:9:86,9,0 1/1:0,6:6:12:119,12,0 1/1:0,4:4:9:82,9,0 1/1:2,8:10:18:165,18,0 +chr19 24184743 rs74513816 A G 297.89 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.718;DB;DP=26;Dels=0.00;FS=6.383;HaplotypeScore=1.2960;MLEAC=8;MLEAF=1.00;MQ=18.57;MQ0=0;MQRankSum=1.463;QD=11.46;ReadPosRankSum=1.296;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:6:61,6,0 1/1:0,4:4:6:53,6,0 1/1:3,7:10:12:132,12,0 1/1:0,7:7:9:90,9,0 +chr19 24227705 . C A 74.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.083;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.8840;MLEAC=3;MLEAF=0.375;MQ=34.67;MQ0=0;MQRankSum=-0.864;QD=1.04;ReadPosRankSum=0.142;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,2:25:40:40,0,292 0/0:16,1:17:21:0,21,245 0/1:37,3:40:52:52,0,562 0/1:6,1:7:21:26,0,21 +chr19 29213744 . T C 141.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.234;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.9352;MLEAC=4;MLEAF=0.500;MQ=30.05;MQ0=0;MQRankSum=-2.252;QD=3.02;ReadPosRankSum=1.038;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,2:12:40:40,0,134 0/1:7,1:8:10:10,0,112 0/1:11,5:16:98:98,0,138 0/1:9,2:11:36:36,0,156 +chr19 30101382 . A C 30.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.331;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.2458;MLEAC=1;MLEAF=0.125;MQ=27.77;MQ0=0;MQRankSum=0.333;QD=3.76;ReadPosRankSum=-0.964;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,1:13:3:0,3,217 0/0:13,1:14:0:0,0,249 0/0:11,1:12:9:0,9,343 0/1:5,3:8:64:64,0,79 +chr19 30193681 . G C 30.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.745;DP=51;Dels=0.00;FS=6.218;HaplotypeScore=4.5095;MLEAC=1;MLEAF=0.125;MQ=25.70;MQ0=0;MQRankSum=0.512;QD=2.73;ReadPosRankSum=0.186;SB=0.572 GT:AD:DP:GQ:PL 0/0:11,0:11:12:0,12,148 0/1:8,3:11:66:66,0,156 0/0:10,0:10:21:0,21,182 0/0:19,0:19:30:0,30,315 +chr19 30199180 . G A 70.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.807;DP=89;Dels=0.02;FS=18.252;HaplotypeScore=20.4115;MLEAC=3;MLEAF=0.375;MQ=20.99;MQ0=0;MQRankSum=1.820;QD=1.03;ReadPosRankSum=-0.862;SB=9.50 GT:AD:DP:GQ:PL 0/1:15,1:20:8:8,0,130 0/0:19,0:20:12:0,12,125 0/1:21,2:24:29:29,0,136 0/1:19,4:23:75:75,0,136 +chr19 30935996 . T C 51.89 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.795;DP=56;Dels=0.04;FS=50.704;HaplotypeScore=10.8439;MLEAC=4;MLEAF=0.500;MQ=24.95;MQ0=0;MQRankSum=-0.453;QD=0.93;ReadPosRankSum=-0.858;SB=-1.714e+00 GT:AD:DP:GQ:PL 0/1:13,3:17:45:45,0,283 0/1:13,1:14:1:1,0,163 0/1:8,3:11:29:29,0,165 0/1:10,1:12:17:17,0,101 +chr19 30936697 . C T 49.51 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.674;DP=22;Dels=0.00;FS=2.808;HaplotypeScore=3.2738;MLEAC=4;MLEAF=0.500;MQ=20.06;MQ0=0;MQRankSum=0.429;QD=2.91;ReadPosRankSum=0.674;SB=1.02 GT:AD:DP:GQ:PL 0/1:3,2:5:15:56,0,15 1/1:3,1:4:3:22,3,0 0/1:6,2:8:14:14,0,65 0/0:5,0:5:6:0,6,57 +chr19 32838287 rs7256708 A C 1226.89 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.638;DB;DP=50;Dels=0.04;FS=0.000;HaplotypeScore=0.4833;MLEAC=7;MLEAF=0.875;MQ=32.35;MQ0=0;MQRankSum=0.163;QD=24.54;ReadPosRankSum=0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,11:20:99:355,0,235 1/1:0,11:11:33:392,33,0 1/1:2,12:14:36:407,36,0 1/1:0,3:3:9:117,9,0 +chr19 33110540 . C T 46.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.815;DP=42;Dels=0.05;FS=0.000;HaplotypeScore=6.3423;MLEAC=3;MLEAF=0.375;MQ=26.08;MQ0=0;MQRankSum=-1.086;QD=1.49;ReadPosRankSum=1.539;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,2:7:56:56,0,74 0/0:8,2:10:6:0,6,66 0/1:10,1:11:17:17,0,152 0/1:8,4:12:15:15,0,68 +chr19 33117666 rs6510271 T C 1081.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.122;DB;DP=93;Dels=0.04;FS=0.913;HaplotypeScore=4.2470;MLEAC=5;MLEAF=0.625;MQ=34.24;MQ0=0;MQRankSum=1.304;QD=11.63;ReadPosRankSum=2.480;SB=-3.830e+02 GT:AD:DP:GQ:PL 0/1:13,4:18:99:109,0,350 1/1:2,18:20:54:685,54,0 0/1:18,4:22:99:119,0,401 0/1:21,8:29:99:214,0,550 +chr19 33200272 . C T 60.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.895;DP=181;Dels=0.00;FS=2.247;HaplotypeScore=1.7585;MLEAC=2;MLEAF=0.250;MQ=22.45;MQ0=0;MQRankSum=3.477;QD=0.64;ReadPosRankSum=-2.481;SB=1.69 GT:AD:DP:GQ:PL 0/0:45,1:46:13:0,13,499 0/1:48,3:51:47:47,0,406 0/0:40,0:40:48:0,48,514 0/1:41,3:44:55:55,0,342 +chr19 33584469 . T A 429.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.495;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.7480;MLEAC=3;MLEAF=0.375;MQ=35.75;MQ0=0;MQRankSum=-1.073;QD=4.88;ReadPosRankSum=1.211;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,7:24:99:180,0,382 0/0:25,1:26:22:0,22,648 0/1:27,7:34:99:156,0,734 0/1:25,5:30:99:137,0,403 +chr19 33603288 rs3837972 AC A 1128.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.665;DB;DP=103;FS=0.000;HaplotypeScore=19.4289;MLEAC=3;MLEAF=0.375;MQ=35.75;MQ0=0;MQRankSum=-2.363;QD=14.29;ReadPosRankSum=1.350;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:13,10:22:99:346,0,477 0/0:24,0:22:66:0,66,984 0/1:19,14:32:99:538,0,706 0/1:14,9:22:99:297,0,550 +chr19 33604531 rs8103733 C T 33.34 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.592;DB;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7230;MLEAC=4;MLEAF=0.500;MQ=29.78;MQ0=0;MQRankSum=-0.592;QD=3.03;ReadPosRankSum=-2.113;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:19:19,0,149 0/1:3,1:4:24:24,0,50 0/0:2,0:2:3:0,3,34 1/1:1,1:2:3:32,3,0 +chr19 33655123 . G T 273.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.609;DP=65;Dels=0.00;FS=51.723;HaplotypeScore=6.4124;MLEAC=4;MLEAF=0.500;MQ=28.32;MQ0=0;MQRankSum=-0.990;QD=4.21;ReadPosRankSum=3.397;SB=-2.769e+00 GT:AD:DP:GQ:PL 0/1:11,4:15:58:58,0,146 0/1:16,6:22:99:105,0,290 0/1:10,6:16:86:130,0,86 0/1:10,2:12:23:23,0,130 +chr19 33697290 . A T 125.86 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.412;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.2493;MLEAC=5;MLEAF=0.625;MQ=28.54;MQ0=0;MQRankSum=0.766;QD=9.68;ReadPosRankSum=1.473;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,51 0/1:4,2:6:53:53,0,61 1/1:0,3:3:9:91,9,0 1/1:3,1:4:3:27,3,0 +chr19 33878198 rs1061338 A G 174.06 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.122;DB;DP=41;Dels=0.05;FS=4.560;HaplotypeScore=9.1968;MLEAC=7;MLEAF=0.875;MQ=22.24;MQ0=0;MQRankSum=1.220;QD=4.25;ReadPosRankSum=1.805;SB=-3.899e+01 GT:AD:DP:GQ:PL 1/1:4,2:6:3:28,3,0 0/1:8,2:11:53:53,0,59 1/1:9,4:13:9:77,9,0 1/1:7,2:9:6:58,6,0 +chr19 34884114 . T G 57.55 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.422;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.0442;MLEAC=3;MLEAF=0.375;MQ=25.08;MQ0=0;MQRankSum=-1.878;QD=1.22;ReadPosRankSum=0.298;SB=-9.619e-03 GT:AD:DP:GQ:PL 0/1:15,1:16:5:5,0,163 0/0:17,1:18:33:0,33,339 0/1:16,2:18:21:21,0,274 0/1:9,4:13:73:73,0,211 +chr19 34887607 . T G 38.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.705;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.7415;MLEAC=3;MLEAF=0.375;MQ=29.31;MQ0=0;MQRankSum=0.235;QD=0.76;ReadPosRankSum=-0.673;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,1:16:8:8,0,235 0/1:13,3:16:67:67,0,96 0/1:18,1:19:2:2,0,259 0/0:6,2:8:6:0,6,49 +chr19 35215941 rs140471755 C CT 249.85 . AC=8;AF=1.00;AN=8;DB;DP=29;FS=0.000;HaplotypeScore=0.2525;MLEAC=8;MLEAF=1.00;MQ=22.07;MQ0=0;QD=8.62;RPA=1,2;RU=T;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:2,6:2:6:85,6,0 1/1:1,5:3:9:127,9,0 1/1:3,4:4:3:42,3,0 1/1:2,3:1:3:42,3,0 +chr19 35800662 rs10411704 G T 418.42 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.627;DB;DP=27;Dels=0.00;FS=8.016;HaplotypeScore=1.1926;MLEAC=8;MLEAF=1.00;MQ=20.11;MQ0=0;MQRankSum=2.627;QD=15.50;ReadPosRankSum=-1.286;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:9:93,9,0 1/1:5,4:9:9:94,9,0 1/1:1,5:6:15:152,15,0 1/1:3,4:8:12:118,12,0 +chr19 35803249 . T G 307.36 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.310;DP=60;Dels=0.05;FS=0.000;HaplotypeScore=15.9774;MLEAC=4;MLEAF=0.500;MQ=18.38;MQ0=0;MQRankSum=0.682;QD=5.12;ReadPosRankSum=0.126;SB=-2.875e-02 GT:AD:DP:GQ:PL 0/1:8,8:16:3:163,0,3 0/1:8,3:11:14:14,0,57 0/1:12,10:23:6:156,0,6 0/1:5,2:7:15:15,0,47 +chr19 35828914 rs145621000 G C 35.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.732;DB;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.2338;MLEAC=1;MLEAF=0.125;MQ=34.90;MQ0=0;MQRankSum=-1.900;QD=2.00;ReadPosRankSum=1.234;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:72:72,0,325 0/0:15,0:15:42:0,42,574 0/0:16,0:16:42:0,42,548 0/0:19,1:20:51:0,51,636 +chr19 35836898 . C T 31.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=-0.736;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=4;MLEAF=1.00;MQ=16.04;MQ0=0;MQRankSum=0.736;QD=6.20;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:2:3:35,3,0 1/1:1,1:3:3:29,3,0 ./. +chr19 35940453 rs34051923 G C 50.01 . AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=32.28;MQ0=0;QD=16.67;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:41,3,0 ./. 1/1:0,1:1:3:42,3,0 ./. +chr19 35991451 . G C 91.33 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.081;DP=65;Dels=0.05;FS=18.174;HaplotypeScore=10.2261;MLEAC=4;MLEAF=0.500;MQ=24.99;MQ0=0;MQRankSum=1.603;QD=1.41;ReadPosRankSum=0.857;SB=-6.517e-01 GT:AD:DP:GQ:PL 0/1:12,2:14:39:39,0,199 0/1:13,1:14:17:17,0,113 0/1:14,1:15:7:7,0,235 0/1:15,4:19:70:70,0,243 +chr19 36003550 . C T 43.75 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.993;DP=87;Dels=0.02;FS=14.402;HaplotypeScore=28.7975;MLEAC=2;MLEAF=0.250;MQ=22.85;MQ0=0;MQRankSum=0.859;QD=1.07;ReadPosRankSum=0.118;SB=1.21 GT:AD:DP:GQ:PL 0/1:11,3:15:65:65,0,139 0/1:25,1:26:20:20,0,78 0/0:23,0:23:36:0,36,365 0/0:21,0:21:18:0,18,177 +chr19 36034198 . C T 136.74 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.590;DP=107;Dels=0.03;FS=7.053;HaplotypeScore=2.7066;MLEAC=4;MLEAF=0.500;MQ=31.45;MQ0=0;MQRankSum=-3.083;QD=1.28;ReadPosRankSum=3.425;SB=-1.045e-01 GT:AD:DP:GQ:PL 0/1:24,3:27:20:20,0,600 0/1:24,3:27:29:29,0,521 0/1:24,3:27:15:15,0,556 0/1:18,5:23:99:115,0,207 +chr19 36104834 . C T 47.18 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.726;DP=222;Dels=0.00;FS=49.257;HaplotypeScore=4.0707;MLEAC=1;MLEAF=0.125;MQ=33.13;MQ0=0;MQRankSum=-3.772;QD=1.07;ReadPosRankSum=1.908;SB=-5.587e+00 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,162,2035 0/1:35,8:44:83:83,0,853 0/0:65,1:66:98:0,98,1513 0/0:39,6:45:8:0,8,960 +chr19 36110298 . T A 39.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.908;DP=61;Dels=0.02;FS=2.451;HaplotypeScore=1.5775;MLEAC=2;MLEAF=0.250;MQ=25.17;MQ0=0;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-1.423;SB=0.275 GT:AD:DP:GQ:PL 0/1:11,1:12:11:11,0,168 0/1:20,4:24:69:69,0,236 0/0:16,0:16:30:0,30,328 0/0:8,0:8:18:0,18,205 +chr19 36164232 . G A 174.89 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.408;DP=88;Dels=0.01;FS=26.397;HaplotypeScore=2.8987;MLEAC=4;MLEAF=0.500;MQ=22.45;MQ0=0;MQRankSum=0.543;QD=1.99;ReadPosRankSum=1.184;SB=-6.696e-01 GT:AD:DP:GQ:PL 0/1:14,2:16:48:48,0,54 0/1:20,2:22:11:11,0,64 0/1:18,3:21:21:21,0,163 0/1:22,6:28:99:137,0,114 +chr19 36166799 . C G 93.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.907;DP=72;Dels=0.01;FS=1.519;HaplotypeScore=7.3097;MLEAC=4;MLEAF=0.500;MQ=28.21;MQ0=0;MQRankSum=0.087;QD=1.29;ReadPosRankSum=0.932;SB=-4.896e+01 GT:AD:DP:GQ:PL 0/1:17,2:19:26:26,0,317 0/1:16,1:17:3:3,0,211 0/1:18,2:20:27:27,0,320 0/1:12,3:15:78:78,0,91 +chr19 36219914 . C G 256.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.656;DP=147;Dels=0.01;FS=113.697;HaplotypeScore=7.1626;MLEAC=4;MLEAF=0.500;MQ=31.60;MQ0=0;MQRankSum=-5.230;QD=1.75;ReadPosRankSum=-1.190;SB=-2.215e+00 GT:AD:DP:GQ:PL 0/1:27,8:35:99:104,0,701 0/1:27,3:30:1:1,0,441 0/1:37,7:44:62:62,0,1038 0/1:28,8:36:99:130,0,610 +chr19 36223960 . A C 57.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.992;DP=34;Dels=0.00;FS=10.263;HaplotypeScore=2.0266;MLEAC=3;MLEAF=0.375;MQ=19.01;MQ0=0;MQRankSum=1.465;QD=4.39;ReadPosRankSum=0.992;SB=2.20 GT:AD:DP:GQ:PL 0/1:4,3:7:27:69,0,27 0/0:11,0:11:3:0,3,37 0/0:10,0:10:3:0,3,39 1/1:5,1:6:3:28,3,0 +chr19 36230402 . G C 40.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.225;DP=82;Dels=0.01;FS=2.323;HaplotypeScore=1.2135;MLEAC=2;MLEAF=0.250;MQ=32.06;MQ0=0;MQRankSum=-1.501;QD=0.97;ReadPosRankSum=0.181;SB=0.158 GT:AD:DP:GQ:PL 0/0:10,0:10:12:0,12,146 0/1:20,3:23:40:40,0,373 0/0:29,0:29:66:0,66,814 0/1:16,3:19:42:42,0,290 +chr19 36243089 rs170758 T C 2248.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.865;DB;DP=74;Dels=0.00;FS=17.469;HaplotypeScore=2.4179;MLEAC=8;MLEAF=1.00;MQ=34.63;MQ0=0;MQRankSum=2.886;QD=30.39;ReadPosRankSum=2.566;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:4,11:15:33:415,33,0 1/1:3,15:18:42:548,42,0 1/1:1,16:17:48:614,48,0 1/1:3,21:24:28:711,28,0 +chr19 36268771 rs231228 C T 315.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.387;DB;DP=129;Dels=0.00;FS=16.291;HaplotypeScore=11.3333;MLEAC=1;MLEAF=0.125;MQ=34.66;MQ0=0;MQRankSum=-0.362;QD=10.53;ReadPosRankSum=1.502;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/0:34,1:35:87:0,87,1120 0/1:19,11:30:99:352,0,490 0/0:37,0:37:99:0,102,1270 0/0:25,2:27:54:0,54,640 +chr19 36303333 . C T 33.42 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.789;DP=33;Dels=0.00;FS=12.755;HaplotypeScore=8.1026;MLEAC=2;MLEAF=0.333;MQ=14.87;MQ0=0;MQRankSum=1.281;QD=1.76;ReadPosRankSum=0.591;SB=2.97 GT:AD:DP:GQ:PL ./. 0/1:9,1:10:17:18,0,17 0/1:5,4:9:24:53,0,24 0/0:5,0:5:6:0,6,46 +chr19 36339372 . C T 32.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.198;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=1.7485;MLEAC=3;MLEAF=0.375;MQ=25.52;MQ0=0;MQRankSum=-1.545;QD=0.89;ReadPosRankSum=2.459;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,5:15:51:51,0,216 0/0:6,0:6:6:0,6,64 0/1:12,1:13:14:14,0,159 0/1:6,2:8:9:9,0,108 +chr19 36350479 . C G 290.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.766;DP=73;Dels=0.00;FS=54.457;HaplotypeScore=8.3339;MLEAC=4;MLEAF=0.500;MQ=22.77;MQ0=0;MQRankSum=-1.817;QD=3.98;ReadPosRankSum=1.817;SB=-1.277e+00 GT:AD:DP:GQ:PL 0/1:9,6:15:65:89,0,65 0/1:11,11:22:72:137,0,72 0/1:15,6:22:63:63,0,88 0/1:7,7:14:15:44,0,15 +chr19 36572721 . G C 188.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.115;DP=101;Dels=0.00;FS=25.058;HaplotypeScore=10.3111;MLEAC=4;MLEAF=0.500;MQ=29.23;MQ0=0;MQRankSum=-0.054;QD=1.87;ReadPosRankSum=2.202;SB=-1.213e-02 GT:AD:DP:GQ:PL 0/1:24,3:27:45:45,0,316 0/1:26,3:29:44:44,0,299 0/1:20,3:23:47:47,0,301 0/1:18,4:22:95:95,0,122 +chr19 36616289 . T A 196.31 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.722;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=12.8274;MLEAC=4;MLEAF=0.500;MQ=32.08;MQ0=0;MQRankSum=-2.678;QD=1.35;ReadPosRankSum=2.274;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:47,2:49:17:17,0,433 0/1:38,7:45:99:159,0,429 0/1:47,4:51:60:60,0,371 0/0:43,2:46:0:0,0,466 +chr19 36988338 rs2912428 T C 114.45 . AC=5;AF=0.833;AN=6;BaseQRankSum=4.381;DB;DP=82;Dels=0.01;FS=1.345;HaplotypeScore=2.1595;MLEAC=5;MLEAF=0.833;MQ=11.15;MQ0=0;MQRankSum=-2.399;QD=1.64;ReadPosRankSum=2.160;SB=-2.695e+01 GT:AD:DP:GQ:PL ./. 1/1:8,14:22:3:31,3,0 1/1:6,18:24:6:75,6,0 0/1:8,15:23:16:47,0,16 +chr19 36988598 . G T 129.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.000;DP=42;Dels=0.00;FS=8.306;HaplotypeScore=2.2106;MLEAC=3;MLEAF=0.375;MQ=32.22;MQ0=0;MQRankSum=-2.269;QD=3.82;ReadPosRankSum=-0.756;SB=0.889 GT:AD:DP:GQ:PL 0/1:6,2:8:40:40,0,190 0/1:9,3:12:65:65,0,167 0/1:11,3:14:67:67,0,93 0/0:8,0:8:6:0,6,63 +chr19 36988841 . CT C 193.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.154;DP=57;FS=6.662;HaplotypeScore=48.1781;MLEAC=4;MLEAF=0.500;MQ=16.02;MQ0=0;MQRankSum=-2.355;QD=3.40;RPA=2,1;RU=T;ReadPosRankSum=2.799;SB=-3.554e-03;STR GT:AD:DP:GQ:PL 0/1:11,2:5:70:79,0,70 0/1:11,4:7:99:99,0,147 0/1:15,3:5:30:30,0,113 0/1:8,2:4:9:37,0,9 +chr19 37310288 . T G 175.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.486;DP=131;Dels=0.00;FS=47.779;HaplotypeScore=6.4378;MLEAC=4;MLEAF=0.500;MQ=24.29;MQ0=0;MQRankSum=2.780;QD=1.34;ReadPosRankSum=2.910;SB=-1.778e-01 GT:AD:DP:GQ:PL 0/1:36,4:40:49:49,0,495 0/1:39,5:44:66:66,0,517 0/1:28,6:34:90:90,0,405 0/1:12,1:13:13:13,0,128 +chr19 37392575 . A C 35.28 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.495;DP=10;Dels=0.00;FS=3.332;HaplotypeScore=1.0812;MLEAC=3;MLEAF=0.750;MQ=22.37;MQ0=0;MQRankSum=1.495;QD=8.82;ReadPosRankSum=0.198;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,2:4:6:70,6,0 ./. 0/0:3,0:3:3:0,3,22 +chr19 37487632 rs935706 G A 607.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.208;DB;DP=111;Dels=0.00;FS=1.892;HaplotypeScore=0.4979;MLEAC=2;MLEAF=0.250;MQ=37.69;MQ0=0;MQRankSum=-3.152;QD=9.96;ReadPosRankSum=0.787;SB=-2.810e+02 GT:AD:DP:GQ:PL 0/1:18,16:34:99:406,0,551 0/1:19,8:27:99:243,0,614 0/0:37,0:37:99:0,111,1436 0/0:13,0:13:36:0,36,473 +chr19 37660826 . C G 43.91 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.266;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=3.6728;MLEAC=2;MLEAF=0.250;MQ=29.47;MQ0=0;MQRankSum=1.018;QD=0.65;ReadPosRankSum=-2.082;SB=0.955 GT:AD:DP:GQ:PL 0/1:30,4:34:60:60,0,482 0/1:30,2:32:24:24,0,412 0/0:31,1:32:18:0,18,566 0/0:35,2:37:3:0,3,630 +chr19 37698004 . T A 105.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.938;DP=150;Dels=0.01;FS=4.975;HaplotypeScore=3.0082;MLEAC=3;MLEAF=0.375;MQ=19.82;MQ0=0;MQRankSum=2.682;QD=0.95;ReadPosRankSum=-0.648;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:35,2:37:18:0,18,226 0/1:34,4:38:66:79,0,66 0/1:36,2:38:36:36,0,232 0/1:31,4:35:34:34,0,179 +chr19 38126522 . A C 78.52 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.326;DP=137;Dels=0.01;FS=36.796;HaplotypeScore=7.3155;MLEAC=3;MLEAF=0.375;MQ=27.81;MQ0=0;MQRankSum=-2.162;QD=0.77;ReadPosRankSum=-0.398;SB=0.325 GT:AD:DP:GQ:PL 0/1:39,4:43:14:14,0,781 0/1:31,6:37:41:41,0,426 0/0:32,2:35:10:0,10,549 0/1:17,4:21:66:66,0,332 +chr19 38229366 . A C 257.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.950;DP=317;Dels=0.01;FS=62.966;HaplotypeScore=25.6693;MLEAC=3;MLEAF=0.375;MQ=29.85;MQ0=0;MQRankSum=-1.905;QD=1.21;ReadPosRankSum=-0.588;SB=0.677 GT:AD:DP:GQ:PL 0/0:94,8:102:17:0,17,1700 0/1:81,9:90:75:75,0,1251 0/1:76,8:85:68:68,0,1170 0/1:27,9:37:99:158,0,246 +chr19 38384898 . T G 104.09 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.123;DP=222;Dels=0.00;FS=51.485;HaplotypeScore=6.9241;MLEAC=2;MLEAF=0.250;MQ=29.93;MQ0=0;MQRankSum=-1.229;QD=0.91;ReadPosRankSum=-0.557;SB=0.312 GT:AD:DP:GQ:PL 0/1:52,7:59:87:87,0,1034 0/0:53,3:56:7:0,7,943 0/0:50,2:52:55:0,55,1126 0/1:48,7:55:58:58,0,842 +chr19 38385159 . A T 66.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.194;DP=63;Dels=0.00;FS=35.680;HaplotypeScore=0.9846;MLEAC=3;MLEAF=0.375;MQ=34.09;MQ0=0;MQRankSum=-1.763;QD=1.39;ReadPosRankSum=0.114;SB=0.513 GT:AD:DP:GQ:PL 0/0:15,0:15:27:0,27,290 0/1:12,3:15:20:20,0,371 0/1:10,3:13:63:63,0,186 0/1:18,2:20:27:27,0,347 +chr19 38597143 . G T 154.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.479;DP=187;Dels=0.01;FS=2.177;HaplotypeScore=4.4187;MLEAC=3;MLEAF=0.375;MQ=35.89;MQ0=0;MQRankSum=-2.167;QD=1.11;ReadPosRankSum=0.891;SB=-1.695e+00 GT:AD:DP:GQ:PL 0/1:44,3:47:3:3,0,933 0/1:44,8:52:96:96,0,1098 0/0:48,0:48:81:0,81,982 0/1:34,5:39:96:96,0,492 +chr19 38795546 rs139805446 TGAA T 888.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.445;DB;DP=97;FS=0.000;HaplotypeScore=9.3546;MLEAC=3;MLEAF=0.375;MQ=28.04;MQ0=0;MQRankSum=1.322;QD=12.88;RPA=3,2;RU=GAA;ReadPosRankSum=-0.623;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:15,8:21:99:425,0,454 0/0:28,0:22:60:0,60,1120 0/1:20,6:21:99:329,0,460 0/1:13,5:16:99:187,0,468 +chr19 38853104 rs138244200 A C 34.05 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.957;DB;DP=135;Dels=0.00;FS=19.642;HaplotypeScore=1.8058;MLEAC=1;MLEAF=0.125;MQ=38.44;MQ0=0;MQRankSum=-3.250;QD=1.03;ReadPosRankSum=1.798;SB=-4.431e+00 GT:AD:DP:GQ:PL 0/0:22,1:23:13:0,13,570 0/0:34,1:35:57:0,57,994 0/0:41,3:44:39:0,39,1060 0/1:29,4:33:70:70,0,599 +chr19 38877266 . C G 61.05 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.533;DP=17;Dels=0.00;FS=15.091;HaplotypeScore=2.7079;MLEAC=7;MLEAF=0.875;MQ=16.79;MQ0=0;MQRankSum=2.400;QD=3.59;ReadPosRankSum=1.867;SB=3.94 GT:AD:DP:GQ:PL 1/1:4,2:6:3:23,3,0 1/1:2,1:3:3:28,3,0 0/1:4,1:5:20:20,0,42 1/1:2,1:3:3:30,3,0 +chr19 38934912 . G T 37.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5859;MLEAC=3;MLEAF=0.375;MQ=34.42;MQ0=0;MQRankSum=-3.257;QD=0.62;ReadPosRankSum=0.260;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,2:18:15:15,0,370 0/1:16,5:21:35:35,0,469 0/1:19,2:21:30:30,0,351 0/0:14,0:14:30:0,30,379 +chr19 38939183 . T G 59.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.575;DP=107;Dels=0.00;FS=6.942;HaplotypeScore=1.2333;MLEAC=2;MLEAF=0.250;MQ=31.33;MQ0=0;MQRankSum=-1.380;QD=1.17;ReadPosRankSum=-0.616;SB=0.999 GT:AD:DP:GQ:PL 0/1:20,5:25:70:70,0,524 0/0:28,1:29:32:0,32,674 0/0:25,1:27:19:0,19,442 0/1:22,4:26:31:31,0,462 +chr19 38958554 . T A 50.10 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.280;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.6043;MLEAC=2;MLEAF=0.250;MQ=25.90;MQ0=0;MQRankSum=0.727;QD=3.85;ReadPosRankSum=2.516;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,2:8:57:57,0,68 0/0:6,0:6:9:0,9,104 0/0:4,0:4:12:0,12,141 0/1:4,1:5:26:34,0,26 +chr19 39008412 . A T 105.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.792;DP=58;Dels=0.03;FS=0.000;HaplotypeScore=1.9484;MLEAC=4;MLEAF=0.500;MQ=23.87;MQ0=0;MQRankSum=1.401;QD=1.82;ReadPosRankSum=0.183;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:13:13,0,136 0/1:17,2:19:23:23,0,77 0/1:12,3:15:75:81,0,75 0/1:8,1:9:21:31,0,21 +chr19 39127421 . G T 114.46 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.254;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=2.1978;MLEAC=2;MLEAF=0.250;MQ=29.25;MQ0=0;MQRankSum=-1.500;QD=1.85;ReadPosRankSum=4.041;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:35,1:36:6:0,6,286 0/1:32,2:34:20:20,0,292 0/0:25,2:27:15:0,15,350 0/1:20,6:27:99:135,0,170 +chr19 39433499 rs57290038 T G 272.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.144;DB;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.9271;MLEAC=3;MLEAF=0.375;MQ=35.86;MQ0=0;MQRankSum=-1.735;QD=8.80;ReadPosRankSum=0.569;SB=-1.052e-02 GT:AD:DP:GQ:PL 0/1:5,5:10:99:141,0,111 0/0:14,0:14:36:0,36,453 0/1:8,5:13:99:150,0,195 0/1:7,1:8:25:25,0,108 +chr19 39618613 rs477489 G C 144.54 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.495;DB;DP=9;Dels=0.00;FS=5.441;HaplotypeScore=0.3670;MLEAC=8;MLEAF=1.00;MQ=24.81;MQ0=0;MQRankSum=1.495;QD=16.06;ReadPosRankSum=0.922;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:32,3,0 1/1:0,2:2:6:77,6,0 1/1:0,1:2:3:41,3,0 1/1:2,1:4:3:31,3,0 +chr19 39691239 rs11672479 A G 915.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.177;DB;DP=158;Dels=0.00;FS=4.936;HaplotypeScore=4.8952;MLEAC=3;MLEAF=0.375;MQ=35.20;MQ0=0;MQRankSum=0.511;QD=8.33;ReadPosRankSum=1.317;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:23,9:32:99:272,0,673 0/0:48,0:48:99:0,111,1412 0/1:24,11:35:99:290,0,756 0/1:30,13:43:99:397,0,632 +chr19 39826218 . T C 523.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.195;DP=132;Dels=0.03;FS=0.000;HaplotypeScore=3.7762;MLEAC=4;MLEAF=0.500;MQ=24.70;MQ0=0;MQRankSum=-0.976;QD=3.97;ReadPosRankSum=3.592;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,9:32:99:129,0,247 0/1:22,10:32:99:152,0,212 0/1:28,8:36:99:116,0,337 0/1:20,8:28:99:169,0,157 +chr19 39869293 . A T 162.99 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.887;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.2705;MLEAC=5;MLEAF=0.625;MQ=18.79;MQ0=0;MQRankSum=1.127;QD=4.66;ReadPosRankSum=2.853;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:12:63,0,12 0/1:4,6:10:18:22,0,18 0/1:2,6:8:13:94,0,13 1/1:4,2:6:3:26,3,0 +chr19 39871332 . C G 30.38 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.256;DP=26;Dels=0.00;FS=7.375;HaplotypeScore=5.8567;MLEAC=4;MLEAF=0.667;MQ=17.06;MQ0=0;MQRankSum=-0.212;QD=1.60;ReadPosRankSum=1.256;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,2:3:24:24,0,28 ./. 0/1:8,2:10:17:17,0,23 1/1:2,4:6:3:28,3,0 +chr19 39876678 . C A 255.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.810;DP=106;Dels=0.01;FS=64.470;HaplotypeScore=25.0902;MLEAC=4;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=0.840;QD=2.41;ReadPosRankSum=-0.127;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:26,6:34:99:114,0,584 0/1:25,2:28:15:15,0,462 0/1:15,2:17:36:36,0,278 0/1:19,7:26:99:133,0,203 +chr19 39882240 . T G 35.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.396;DP=122;Dels=0.00;FS=20.154;HaplotypeScore=3.3302;MLEAC=1;MLEAF=0.125;MQ=39.85;MQ0=0;MQRankSum=-2.901;QD=1.06;ReadPosRankSum=0.534;SB=0.660 GT:AD:DP:GQ:PL 0/0:24,1:25:47:0,47,851 0/1:29,5:34:72:72,0,695 0/0:26,1:27:47:0,47,876 0/0:34,2:36:48:0,48,979 +chr19 39899421 . G T 79.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.319;DP=44;Dels=0.05;FS=5.686;HaplotypeScore=2.4589;MLEAC=3;MLEAF=0.375;MQ=20.16;MQ0=0;MQRankSum=-0.567;QD=3.08;ReadPosRankSum=-0.425;SB=-1.239e-02 GT:AD:DP:GQ:PL 0/0:6,2:8:12:0,12,118 0/1:9,3:13:39:39,0,124 1/1:4,7:11:9:87,9,0 0/0:9,1:10:9:0,9,102 +chr19 39994822 . G A 268.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.799;DP=92;Dels=0.01;FS=80.199;HaplotypeScore=6.8769;MLEAC=4;MLEAF=0.500;MQ=25.92;MQ0=0;MQRankSum=-0.158;QD=2.92;ReadPosRankSum=-0.415;SB=-2.867e+00 GT:AD:DP:GQ:PL 0/1:16,2:18:16:16,0,367 0/1:27,3:30:22:22,0,481 0/1:14,5:19:99:127,0,238 0/1:16,8:24:99:146,0,323 +chr19 39998589 . G C 43.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.321;DP=106;Dels=0.00;FS=4.622;HaplotypeScore=1.2395;MLEAC=2;MLEAF=0.250;MQ=32.97;MQ0=0;MQRankSum=-0.524;QD=0.97;ReadPosRankSum=-1.624;SB=-3.103e-02 GT:AD:DP:GQ:PL 0/1:21,4:25:59:59,0,564 0/0:26,1:27:38:0,38,718 0/0:33,1:34:47:0,47,927 0/1:18,2:20:26:26,0,265 +chr19 40222000 . C G 414.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-7.008;DP=245;Dels=0.00;FS=253.050;HaplotypeScore=22.6684;MLEAC=4;MLEAF=0.500;MQ=38.39;MQ0=0;MQRankSum=-6.529;QD=1.69;ReadPosRankSum=1.132;SB=-4.996e-03 GT:AD:DP:GQ:PL 0/1:67,11:78:99:102,0,1964 0/1:53,16:69:99:253,0,1374 0/1:59,12:71:69:69,0,1977 0/1:22,4:26:33:33,0,709 +chr19 40368391 rs76288738 G A 33.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.244;DB;DP=103;Dels=0.00;FS=1.002;HaplotypeScore=1.2351;MLEAC=3;MLEAF=0.375;MQ=14.19;MQ0=0;MQRankSum=-2.107;QD=0.40;ReadPosRankSum=1.495;SB=-2.680e+01 GT:AD:DP:GQ:PL 0/1:17,4:21:33:33,0,33 0/0:19,0:19:12:0,12,125 0/1:22,6:28:26:26,0,33 0/1:25,10:35:17:17,0,205 +chr19 40724041 . T G 30.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.609;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.0161;MLEAC=2;MLEAF=0.250;MQ=31.71;MQ0=0;MQRankSum=0.624;QD=1.53;ReadPosRankSum=-0.952;SB=-1.390e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,80 0/1:7,2:9:36:36,0,133 0/1:9,2:11:35:35,0,226 0/0:6,0:6:9:0,9,88 +chr19 40842355 . T C 332.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.121;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8531;MLEAC=4;MLEAF=0.500;MQ=33.66;MQ0=0;MQRankSum=-1.634;QD=2.75;ReadPosRankSum=1.259;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,5:27:99:133,0,389 0/1:31,4:35:82:82,0,346 0/1:28,4:33:88:88,0,312 0/1:22,4:26:72:72,0,363 +chr19 40873696 . C T 198.68 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.082;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=5.6575;MLEAC=6;MLEAF=0.750;MQ=21.76;MQ0=0;MQRankSum=1.674;QD=5.84;ReadPosRankSum=0.041;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,2:5:3:33,3,0 0/1:5,1:6:23:31,0,23 1/1:9,4:13:9:90,9,0 0/1:6,3:9:18:88,0,18 +chr19 40882481 . G T 95.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.613;DP=88;Dels=0.01;FS=75.675;HaplotypeScore=3.8471;MLEAC=1;MLEAF=0.125;MQ=31.67;MQ0=0;MQRankSum=-2.506;QD=5.59;ReadPosRankSum=0.640;SB=-4.470e+00 GT:AD:DP:GQ:PL 0/1:12,5:17:99:131,0,294 0/0:20,2:22:45:0,45,558 0/0:21,3:24:18:0,18,540 0/0:24,0:24:48:0,48,568 +chr19 40886787 . G C 96.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.693;DP=116;Dels=0.01;FS=32.326;HaplotypeScore=14.7824;MLEAC=3;MLEAF=0.375;MQ=25.68;MQ0=0;MQRankSum=0.704;QD=1.13;ReadPosRankSum=-1.144;SB=-5.271e+00 GT:AD:DP:GQ:PL 0/1:23,4:27:8:8,0,396 0/0:27,2:29:2:0,2,403 0/1:30,3:33:2:2,0,462 0/1:21,5:26:99:124,0,244 +chr19 40929363 rs268687 T C 152.90 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.831;DB;DP=46;Dels=0.04;FS=1.566;HaplotypeScore=8.6589;MLEAC=4;MLEAF=0.500;MQ=24.97;MQ0=0;MQRankSum=-0.304;QD=4.37;ReadPosRankSum=0.304;SB=-7.111e+01 GT:AD:DP:GQ:PL 1/1:1,8:9:15:174,15,0 0/1:11,1:12:15:15,0,124 0/1:9,3:12:11:11,0,111 0/0:10,0:11:12:0,12,145 +chr19 40978679 . C T 36.26 . AC=1;AF=0.250;AN=4;BaseQRankSum=-2.017;DP=27;Dels=0.00;FS=6.264;HaplotypeScore=2.4109;MLEAC=1;MLEAF=0.250;MQ=20.05;MQ0=0;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.922;SB=1.75 GT:AD:DP:GQ:PL ./. 0/0:5,1:6:3:0,3,30 0/1:9,3:12:25:68,0,25 ./. +chr19 41008092 . G A 197.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.410;DP=94;Dels=0.00;FS=47.088;HaplotypeScore=6.6711;MLEAC=3;MLEAF=0.375;MQ=32.41;MQ0=0;MQRankSum=-1.480;QD=2.75;ReadPosRankSum=-1.510;SB=0.031 GT:AD:DP:GQ:PL 0/0:22,0:22:57:0,57,713 0/1:17,3:20:63:63,0,267 0/1:18,6:24:99:123,0,373 0/1:24,4:28:55:55,0,460 +chr19 41092762 . G C 125.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.265;DP=184;Dels=0.02;FS=31.406;HaplotypeScore=19.0334;MLEAC=2;MLEAF=0.250;MQ=31.52;MQ0=0;MQRankSum=-4.069;QD=1.49;ReadPosRankSum=-2.204;SB=-3.582e+01 GT:AD:DP:GQ:PL 0/0:42,1:43:61:0,61,1051 0/1:34,8:42:99:129,0,731 0/0:50,5:55:93:0,93,1279 0/1:36,4:41:38:38,0,653 +chr19 41105218 . GC G 67.43 . AC=2;AF=0.250;AN=8;BaseQRankSum=3.557;DP=58;FS=8.770;HaplotypeScore=33.3919;MLEAC=2;MLEAF=0.250;MQ=21.89;MQ0=0;MQRankSum=-2.413;QD=1.98;ReadPosRankSum=0.381;SB=0.873 GT:AD:DP:GQ:PL 0/1:14,4:12:52:52,0,169 0/1:10,3:10:65:65,0,191 0/0:11,3:7:7:0,7,153 0/0:5,1:7:9:0,9,119 +chr19 41111133 . G A 31.99 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.488;DP=73;Dels=0.00;FS=42.441;HaplotypeScore=4.8916;MLEAC=2;MLEAF=0.250;MQ=29.28;MQ0=0;MQRankSum=-0.504;QD=0.86;ReadPosRankSum=-0.504;SB=-2.356e+00 GT:AD:DP:GQ:PL 0/0:18,1:19:14:0,14,429 0/0:16,1:17:3:0,3,345 0/1:15,3:18:48:48,0,293 0/1:17,2:19:24:24,0,268 +chr19 41112500 . T G 44.10 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.273;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=21.24;MQ0=0;MQRankSum=0.667;QD=3.15;ReadPosRankSum=-0.667;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:35:45,0,35 0/0:5,0:5:6:0,6,53 0/1:4,1:5:25:25,0,49 0/1:3,1:4:16:16,0,27 +chr19 41119028 . A T 86.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.560;DP=55;Dels=0.00;FS=2.377;HaplotypeScore=0.4915;MLEAC=2;MLEAF=0.250;MQ=31.70;MQ0=0;MQRankSum=-1.354;QD=2.98;ReadPosRankSum=-0.930;SB=1.126e-03 GT:AD:DP:GQ:PL 0/1:12,3:15:66:66,0,226 0/0:13,0:13:33:0,33,367 0/0:13,0:13:30:0,30,355 0/1:11,3:14:62:62,0,248 +chr19 41128309 rs10880 C T 84.22 . AC=4;AF=1.00;AN=4;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=26.91;MQ0=0;QD=16.84;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:43,3,0 1/1:2,2:4:6:75,6,0 ./. ./. +chr19 41220529 rs11673492 C T 390.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.800;DB;DP=69;Dels=0.01;FS=1.467;HaplotypeScore=1.1517;MLEAC=4;MLEAF=0.500;MQ=27.47;MQ0=0;MQRankSum=0.324;QD=7.51;ReadPosRankSum=1.389;SB=-5.531e+01 GT:AD:DP:GQ:PL 1/1:2,13:15:12:401,12,0 0/0:17,0:17:42:0,42,445 0/1:13,3:16:26:26,0,306 0/1:18,2:20:11:11,0,337 +chr19 41251180 rs2369302 T G 1139.07 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.875;DB;DP=33;Dels=0.03;FS=10.280;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=38.04;MQ0=0;MQRankSum=2.780;QD=34.52;ReadPosRankSum=1.034;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,7:7:21:273,21,0 1/1:0,4:4:12:170,12,0 1/1:1,9:10:27:378,27,0 1/1:2,9:11:27:357,27,0 +chr19 41386033 rs73032311 T C 161.39 . AC=5;AF=0.833;AN=6;BaseQRankSum=-1.641;DB;DP=178;Dels=0.00;FS=2.068;HaplotypeScore=1.5772;MLEAC=5;MLEAF=0.833;MQ=10.33;MQ0=0;MQRankSum=1.472;QD=1.27;ReadPosRankSum=1.722;SB=-2.169e+01 GT:AD:DP:GQ:PL 1/1:22,12:34:3:38,3,0 0/1:34,17:51:26:30,0,26 ./. 1/1:29,13:42:12:133,12,0 +chr19 41558271 rs16974674 C T 41.33 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.381;DB;DP=130;Dels=0.04;FS=60.235;HaplotypeScore=5.7275;MLEAC=1;MLEAF=0.125;MQ=14.90;MQ0=0;MQRankSum=0.754;QD=1.22;ReadPosRankSum=-1.024;SB=1.96 GT:AD:DP:GQ:PL 0/0:29,0:29:18:0,18,230 0/0:29,3:32:9:0,9,115 0/0:28,4:32:9:0,9,88 0/1:24,8:32:77:77,0,94 +chr19 41703660 rs338594 T C 73.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.029;DB;DP=36;Dels=0.00;FS=4.151;HaplotypeScore=1.7578;MLEAC=3;MLEAF=0.375;MQ=25.06;MQ0=0;MQRankSum=0.262;QD=2.92;ReadPosRankSum=-1.779;SB=-5.057e+01 GT:AD:DP:GQ:PL 0/1:4,3:7:30:85,0,30 0/1:9,1:10:23:23,0,56 0/1:7,1:8:7:7,0,152 0/0:10,1:11:21:0,21,195 +chr19 41704832 rs338592 A G 622.26 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.216;DB;DP=24;Dels=0.00;FS=10.212;HaplotypeScore=0.1446;MLEAC=8;MLEAF=1.00;MQ=28.00;MQ0=0;MQRankSum=2.216;QD=25.93;ReadPosRankSum=1.138;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,4:5:12:136,12,0 1/1:0,6:6:18:213,18,0 1/1:3,3:6:9:96,9,0 1/1:1,6:7:18:216,18,0 +chr19 41787010 . A G 74.13 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.399;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=0.9911;MLEAC=3;MLEAF=0.375;MQ=33.14;MQ0=0;MQRankSum=-3.564;QD=1.04;ReadPosRankSum=1.799;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,2:29:13:0,13,541 0/1:22,4:26:64:64,0,319 0/1:24,2:26:19:19,0,388 0/1:16,3:19:34:34,0,200 +chr19 41854269 . C T 98.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.674;DP=226;Dels=0.01;FS=44.040;HaplotypeScore=7.8278;MLEAC=3;MLEAF=0.375;MQ=31.27;MQ0=0;MQRankSum=-1.510;QD=0.62;ReadPosRankSum=-0.669;SB=-2.747e-01 GT:AD:DP:GQ:PL 0/1:46,3:49:2:2,0,785 0/1:53,7:60:88:88,0,857 0/0:63,2:67:64:0,64,1147 0/1:41,5:48:49:49,0,674 +chr19 42130776 rs929502 G A 271.52 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.751;DB;DP=9;Dels=0.00;FS=9.542;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=33.34;MQ0=0;MQRankSum=0.751;QD=30.17;ReadPosRankSum=0.751;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,2:2:6:80,6,0 1/1:0,3:3:9:113,9,0 1/1:0,1:1:3:38,3,0 1/1:1,2:3:6:78,6,0 +chr19 42146140 . C A 63.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.702;DP=45;Dels=0.00;FS=11.979;HaplotypeScore=1.8234;MLEAC=1;MLEAF=0.125;MQ=29.87;MQ0=0;MQRankSum=-2.582;QD=6.31;ReadPosRankSum=-0.781;SB=-3.074e+00 GT:AD:DP:GQ:PL 0/1:6,4:10:98:98,0,157 0/0:15,1:16:0:0,0,305 0/0:12,0:12:21:0,21,273 0/0:6,1:7:15:0,15,197 +chr19 42223802 . A T 407.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.170;DP=165;Dels=0.02;FS=0.000;HaplotypeScore=5.8374;MLEAC=4;MLEAF=0.500;MQ=14.55;MQ0=0;MQRankSum=6.354;QD=2.47;ReadPosRankSum=-0.496;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:31,3:35:45:72,0,45 0/1:43,6:49:28:147,0,28 0/1:36,3:39:39:56,0,39 0/1:31,8:39:31:175,0,31 +chr19 42312855 . A G 43.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.249;DP=176;Dels=0.00;FS=9.475;HaplotypeScore=12.3911;MLEAC=2;MLEAF=0.250;MQ=20.68;MQ0=0;MQRankSum=1.405;QD=0.50;ReadPosRankSum=0.898;SB=-1.285e-02 GT:AD:DP:GQ:PL 0/1:40,3:43:41:41,0,399 0/1:40,4:44:44:44,0,386 0/0:52,1:53:51:0,51,520 0/0:35,1:36:26:0,26,409 +chr19 42355743 rs185994620 G C 96.08 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.073;DB;DP=85;Dels=0.00;FS=10.280;HaplotypeScore=0.9508;MLEAC=2;MLEAF=0.250;MQ=30.45;MQ0=0;MQRankSum=-1.015;QD=2.53;ReadPosRankSum=-0.918;SB=-2.142e+00 GT:AD:DP:GQ:PL 0/1:16,3:19:55:55,0,318 0/0:25,0:26:42:0,42,499 0/0:20,1:21:2:0,2,358 0/1:15,4:19:81:81,0,298 +chr19 42463067 . T C 35.77 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.769;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=4.1428;MLEAC=2;MLEAF=0.333;MQ=19.92;MQ0=0;MQRankSum=1.034;QD=4.47;ReadPosRankSum=1.769;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,2:3:14:44,0,14 0/0:6,0:6:9:0,9,82 ./. 1/1:2,2:4:3:31,3,0 +chr19 42585305 . G T 127.08 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.338;DP=132;Dels=0.00;FS=69.544;HaplotypeScore=5.2913;MLEAC=4;MLEAF=0.500;MQ=34.17;MQ0=0;MQRankSum=-2.427;QD=0.96;ReadPosRankSum=-1.300;SB=-2.509e+00 GT:AD:DP:GQ:PL 0/1:32,2:34:12:12,0,564 0/1:25,5:30:99:110,0,412 0/1:34,2:36:1:1,0,620 0/1:29,3:32:44:44,0,495 +chr19 42719342 rs139696001 G C 148.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.416;DB;DP=140;Dels=0.04;FS=27.915;HaplotypeScore=11.8866;MLEAC=4;MLEAF=0.500;MQ=30.38;MQ0=0;MQRankSum=-0.494;QD=1.06;ReadPosRankSum=2.278;SB=-1.033e-01 GT:AD:DP:GQ:PL 0/1:28,3:32:34:34,0,492 0/1:26,3:30:44:44,0,533 0/1:41,3:45:16:16,0,657 0/1:23,5:28:97:97,0,362 +chr19 42798400 . C A 160.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.238;DP=93;Dels=0.02;FS=35.661;HaplotypeScore=15.3909;MLEAC=4;MLEAF=0.500;MQ=22.58;MQ0=0;MQRankSum=0.352;QD=1.73;ReadPosRankSum=-0.067;SB=-1.158e+00 GT:AD:DP:GQ:PL 0/1:18,2:21:32:32,0,122 0/1:15,4:19:87:91,0,87 0/1:26,5:32:77:77,0,326 0/1:17,2:19:1:1,0,153 +chr19 42819261 . T C 37.57 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.816;DP=131;Dels=0.00;FS=37.652;HaplotypeScore=4.6092;MLEAC=1;MLEAF=0.125;MQ=32.05;MQ0=0;MQRankSum=-2.267;QD=1.30;ReadPosRankSum=-1.961;SB=-7.402e+00 GT:AD:DP:GQ:PL 0/0:28,2:30:30:0,30,693 0/0:29,0:29:51:0,51,589 0/0:40,3:43:3:0,3,898 0/1:25,4:29:73:73,0,342 +chr19 43031459 . A T 53.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=-5.169;DP=307;Dels=0.00;FS=40.503;HaplotypeScore=2.3785;MLEAC=2;MLEAF=0.250;MQ=16.91;MQ0=0;MQRankSum=3.137;QD=0.39;ReadPosRankSum=-0.392;SB=-2.690e+00 GT:AD:DP:GQ:PL 0/1:70,3:73:36:36,0,414 0/0:82,4:86:10:0,10,428 0/0:80,3:83:2:0,2,433 0/1:60,4:64:57:57,0,413 +chr19 43093274 . C T 124.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.923;DP=77;Dels=0.04;FS=2.833;HaplotypeScore=12.6111;MLEAC=4;MLEAF=0.500;MQ=19.28;MQ0=0;MQRankSum=2.378;QD=1.62;ReadPosRankSum=-0.923;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:32:41,0,32 0/1:16,5:22:37:64,0,37 0/1:20,2:22:35:35,0,86 0/1:16,1:17:16:27,0,16 +chr19 43093279 . C T 68.28 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.955;DP=87;Dels=0.02;FS=0.000;HaplotypeScore=9.4745;MLEAC=4;MLEAF=0.500;MQ=20.09;MQ0=0;MQRankSum=-1.221;QD=0.78;ReadPosRankSum=3.511;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,3:13:8:8,0,86 0/1:21,4:25:14:14,0,43 0/1:22,3:25:33:33,0,97 0/1:18,4:22:42:55,0,42 +chr19 43381977 . G C 119.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.572;DP=215;Dels=0.01;FS=4.283;HaplotypeScore=23.0142;MLEAC=3;MLEAF=0.375;MQ=19.68;MQ0=0;MQRankSum=3.066;QD=0.74;ReadPosRankSum=-1.324;SB=-9.132e-02 GT:AD:DP:GQ:PL 0/1:52,4:56:31:31,0,390 0/1:46,2:48:16:16,0,251 0/0:51,0:52:48:0,48,455 0/1:48,8:57:99:116,0,171 +chr19 43576008 . G A 65.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.569;DP=339;Dels=0.00;FS=18.240;HaplotypeScore=1.6105;MLEAC=2;MLEAF=0.250;MQ=15.94;MQ0=0;MQRankSum=3.387;QD=0.39;ReadPosRankSum=0.289;SB=-3.644e+00 GT:AD:DP:GQ:PL 0/0:86,0:86:15:0,15,140 0/0:84,1:86:18:0,18,147 0/1:88,2:90:55:55,0,58 0/1:75,2:77:52:52,0,57 +chr19 43863157 . T C 60.22 . AC=4;AF=1.00;AN=4;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=27.07;MQ0=0;QD=20.07;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:30,3,0 1/1:0,2:2:6:64,6,0 ./. +chr19 43864324 . T A 143.42 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.462;DP=97;Dels=0.00;FS=4.584;HaplotypeScore=1.9622;MLEAC=5;MLEAF=0.625;MQ=16.10;MQ0=0;MQRankSum=3.522;QD=1.48;ReadPosRankSum=-2.387;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,4:23:64:64,0,90 1/1:22,2:24:6:73,6,0 0/1:26,2:28:15:15,0,151 0/1:19,3:22:35:35,0,127 +chr19 44098963 rs304725 C G 275.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.571;DB;DP=50;Dels=0.02;FS=6.253;HaplotypeScore=2.3246;MLEAC=4;MLEAF=0.500;MQ=35.69;MQ0=0;MQRankSum=-0.654;QD=7.87;ReadPosRankSum=1.573;SB=-3.756e+01 GT:AD:DP:GQ:PL 1/1:2,6:8:15:201,15,0 0/0:14,0:14:36:0,36,445 0/1:12,4:16:99:114,0,324 0/1:10,1:11:8:8,0,253 +chr19 44128502 . T G 85.61 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.844;DP=31;Dels=0.03;FS=6.214;HaplotypeScore=4.9935;MLEAC=3;MLEAF=0.375;MQ=22.32;MQ0=0;MQRankSum=0.205;QD=3.72;ReadPosRankSum=2.079;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:13:35,0,13 0/1:2,5:7:14:74,0,14 0/1:5,1:6:19:19,0,75 0/0:6,2:8:9:0,9,110 +chr19 44273516 rs347519 T C 235.29 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.266;DB;DP=56;Dels=0.02;FS=8.526;HaplotypeScore=2.5111;MLEAC=4;MLEAF=0.500;MQ=21.27;MQ0=0;MQRankSum=0.509;QD=6.03;ReadPosRankSum=2.323;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,7:9:18:165,18,0 0/0:16,0:17:12:0,12,147 0/1:9,4:13:48:48,0,92 0/1:10,6:16:70:70,0,137 +chr19 44276019 . G A 53.14 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.904;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.0405;MLEAC=4;MLEAF=0.500;MQ=23.09;MQ0=0;MQRankSum=-0.240;QD=1.11;ReadPosRankSum=-0.166;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:37:37,0,109 0/1:10,4:14:34:34,0,46 0/1:13,1:14:3:3,0,150 0/1:8,1:9:20:20,0,66 +chr19 44302725 . G C 70 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.009;DP=104;Dels=0.01;FS=7.186;HaplotypeScore=9.2264;MLEAC=1;MLEAF=0.125;MQ=33.19;MQ0=0;MQRankSum=-2.500;QD=2.59;ReadPosRankSum=1.586;SB=0.036 GT:AD:DP:GQ:PL 0/1:20,6:26:99:106,0,216 0/0:21,1:22:27:0,27,314 0/0:31,1:32:29:0,29,597 0/0:23,0:23:27:0,27,314 +chr19 44470420 rs439676 T C 1723 . AC=8;AF=1.00;AN=8;BaseQRankSum=5.274;DB;DP=233;Dels=0.00;FS=5.975;HaplotypeScore=0.7039;MLEAC=8;MLEAF=1.00;MQ=15.74;MQ0=0;MQRankSum=2.214;QD=7.39;ReadPosRankSum=4.008;SB=-7.395e+02 GT:AD:DP:GQ:PL 1/1:4,64:68:19:430,19,0 1/1:5,61:66:66:655,66,0 1/1:9,63:72:26:429,26,0 1/1:4,23:27:24:248,24,0 +chr19 44500729 . T C 49.64 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.567;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=1.4647;MLEAC=3;MLEAF=0.375;MQ=10.55;MQ0=0;MQRankSum=3.147;QD=0.59;ReadPosRankSum=-2.062;SB=-4.113e+01 GT:AD:DP:GQ:PL 0/1:53,2:55:39:39,0,105 0/0:54,0:54:6:0,6,70 0/0:80,0:80:27:0,27,268 1/1:27,2:29:6:55,6,0 +chr19 44778405 rs1233428 A C 608.83 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.568;DB;DP=161;Dels=0.00;FS=9.397;HaplotypeScore=2.7882;MLEAC=6;MLEAF=0.750;MQ=19.09;MQ0=0;MQRankSum=-6.127;QD=3.78;ReadPosRankSum=0.387;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:23,18:41:37:37,0,548 0/1:25,20:45:57:57,0,475 1/1:2,38:40:3:260,3,0 1/1:2,33:35:30:299,30,0 +chr19 44807472 . C A 255.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.989;DP=139;Dels=0.00;FS=4.446;HaplotypeScore=2.9971;MLEAC=4;MLEAF=0.500;MQ=28.02;MQ0=0;MQRankSum=2.942;QD=1.84;ReadPosRankSum=-2.950;SB=-1.189e-01 GT:AD:DP:GQ:PL 0/1:34,4:38:34:34,0,830 0/1:31,6:37:99:133,0,467 0/1:34,2:36:14:14,0,466 0/1:23,5:28:99:117,0,331 +chr19 44844572 . T A 54.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.524;DP=366;Dels=0.01;FS=6.457;HaplotypeScore=3.4502;MLEAC=1;MLEAF=0.125;MQ=26.21;MQ0=0;MQRankSum=2.023;QD=0.62;ReadPosRankSum=-2.124;SB=-1.170e-02 GT:AD:DP:GQ:PL 0/0:76,0:76:99:0,108,1251 0/0:89,2:91:62:0,62,1135 0/0:109,2:111:62:0,62,1146 0/1:78,7:85:91:91,0,1046 +chr19 44981375 rs954314 T C 182.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.943;DB;DP=183;Dels=0.00;FS=3.870;HaplotypeScore=1.8793;MLEAC=1;MLEAF=0.125;MQ=21.45;MQ0=0;MQRankSum=-0.120;QD=4.57;ReadPosRankSum=1.236;SB=-1.030e+02 GT:AD:DP:GQ:PL 0/0:58,0:58:99:0,105,1075 0/1:25,15:40:99:219,0,268 0/0:64,0:64:99:0,108,1042 0/0:21,0:21:30:0,30,281 +chr19 45490587 . G A 40.16 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.534;DP=137;Dels=0.01;FS=4.738;HaplotypeScore=16.4206;MLEAC=1;MLEAF=0.125;MQ=24.65;MQ0=0;MQRankSum=0.534;QD=1.22;ReadPosRankSum=-1.212;SB=-4.303e+00 GT:AD:DP:GQ:PL 0/1:30,3:33:48:75,0,48 0/0:39,0:39:45:0,45,442 0/0:34,2:36:0:0,0,222 0/0:27,1:28:13:0,13,302 +chr19 45515259 . G C 46.77 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.787;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.8984;MLEAC=4;MLEAF=0.500;MQ=24.41;MQ0=0;MQRankSum=1.250;QD=1.87;ReadPosRankSum=-0.972;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:17:17,0,74 0/1:2,1:3:18:18,0,22 0/1:7,2:9:33:33,0,75 0/1:6,1:7:21:21,0,22 +chr19 45805708 . T C 48.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.336;DP=175;Dels=0.02;FS=0.000;HaplotypeScore=12.5387;MLEAC=1;MLEAF=0.125;MQ=33.08;MQ0=0;MQRankSum=-3.108;QD=1.11;ReadPosRankSum=-0.047;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:41,0:41:69:0,69,843 0/0:38,1:41:46:0,46,875 0/0:44,0:46:87:0,87,1029 0/1:38,5:43:85:85,0,591 +chr19 45922323 rs3212961 G T 72.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.727;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.1830;MLEAC=4;MLEAF=1.00;MQ=21.50;MQ0=0;MQRankSum=0.727;QD=10.32;ReadPosRankSum=0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:2,1:3:3:41,3,0 1/1:2,2:4:6:65,6,0 +chr19 45998117 . C G 110.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.447;DP=55;Dels=0.02;FS=41.688;HaplotypeScore=8.4737;MLEAC=3;MLEAF=0.375;MQ=28.72;MQ0=0;MQRankSum=-0.365;QD=2.85;ReadPosRankSum=-0.554;SB=-3.399e-01 GT:AD:DP:GQ:PL 0/1:9,1:10:21:21,0,170 0/0:15,1:16:6:0,6,310 0/1:12,4:16:56:56,0,268 0/1:9,3:12:76:76,0,175 +chr19 46002456 rs3745821 G T 56.03 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.818;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.4825;MLEAC=4;MLEAF=0.500;MQ=25.95;MQ0=0;MQRankSum=1.386;QD=5.60;ReadPosRankSum=-0.731;SB=-2.404e+01 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,58 1/1:1,1:2:3:32,3,0 1/1:2,1:3:3:39,3,0 0/1:3,1:5:28:28,0,55 +chr19 46057132 . G A 116.43 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.991;DP=45;Dels=0.04;FS=29.550;HaplotypeScore=13.5903;MLEAC=3;MLEAF=0.375;MQ=21.50;MQ0=0;MQRankSum=-0.162;QD=3.64;ReadPosRankSum=3.406;SB=19.04 GT:AD:DP:GQ:PL 0/1:5,4:10:70:70,0,89 0/1:4,2:7:11:11,0,95 0/0:9,2:12:6:0,6,57 0/1:10,4:14:51:77,0,51 +chr19 46088039 . G C 83.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.129;DP=80;Dels=0.00;FS=4.596;HaplotypeScore=2.4290;MLEAC=3;MLEAF=0.375;MQ=34.52;MQ0=0;MQRankSum=-1.502;QD=1.42;ReadPosRankSum=-0.445;SB=-1.317e+00 GT:AD:DP:GQ:PL 0/1:14,2:16:29:29,0,348 0/1:22,2:24:4:4,0,559 0/0:20,1:21:19:0,19,565 0/1:15,4:19:92:92,0,455 +chr19 46133251 rs7251952 C T 933.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.144;DB;DP=103;Dels=0.00;FS=0.873;HaplotypeScore=4.9378;MLEAC=3;MLEAF=0.375;MQ=33.34;MQ0=0;MQRankSum=-3.718;QD=11.97;ReadPosRankSum=1.420;SB=-2.947e+02 GT:AD:DP:GQ:PL 0/0:25,0:25:63:0,63,841 0/1:2,14:16:8:404,0,8 0/1:25,18:43:99:453,0,703 0/1:13,5:19:99:120,0,352 +chr19 46198816 . G C 236.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.745;DP=121;Dels=0.02;FS=36.913;HaplotypeScore=19.3929;MLEAC=4;MLEAF=0.500;MQ=25.58;MQ0=0;MQRankSum=-0.171;QD=1.96;ReadPosRankSum=2.002;SB=-5.425e-02 GT:AD:DP:GQ:PL 0/1:21,5:27:99:125,0,148 0/1:25,3:28:19:19,0,221 0/1:28,5:33:75:75,0,313 0/1:25,5:30:60:60,0,224 +chr19 46268934 . T C 56.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.893;DP=88;Dels=0.00;FS=60.357;HaplotypeScore=4.6466;MLEAC=2;MLEAF=0.250;MQ=30.54;MQ0=0;MQRankSum=-2.518;QD=1.49;ReadPosRankSum=-0.282;SB=-8.165e-01 GT:AD:DP:GQ:PL 0/0:23,1:24:22:0,22,537 0/1:16,2:18:23:23,0,278 0/0:24,2:26:25:0,25,736 0/1:16,4:20:75:75,0,369 +chr19 46274950 . C G 45.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.116;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=12.9353;MLEAC=3;MLEAF=0.375;MQ=22.32;MQ0=0;MQRankSum=-0.698;QD=1.09;ReadPosRankSum=1.222;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:6:0,6,67 0/1:12,2:14:24:24,0,166 0/1:11,3:14:29:29,0,212 0/1:10,4:14:35:35,0,137 +chr19 46274965 . A G 96.31 . AC=3;AF=0.500;AN=6;BaseQRankSum=-3.002;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=4.8606;MLEAC=3;MLEAF=0.500;MQ=19.65;MQ0=0;MQRankSum=2.009;QD=2.35;ReadPosRankSum=0.339;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:13,2:15:34:34,0,157 0/1:8,4:12:41:81,0,41 0/1:11,2:13:20:20,0,75 +chr19 46313758 rs10402263 G C 2762.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.908;DB;DP=203;Dels=0.00;FS=11.837;HaplotypeScore=3.4568;MLEAC=4;MLEAF=0.500;MQ=33.81;MQ0=0;MQRankSum=-1.551;QD=13.61;ReadPosRankSum=2.192;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:30,22:52:99:705,0,726 0/1:27,21:48:99:624,0,672 0/1:28,22:50:99:682,0,663 0/1:27,26:53:99:794,0,820 +chr19 46444154 . C G 124.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.657;DP=50;Dels=0.00;FS=18.700;HaplotypeScore=3.9107;MLEAC=4;MLEAF=0.500;MQ=26.82;MQ0=0;MQRankSum=1.682;QD=2.49;ReadPosRankSum=-1.201;SB=-1.351e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:45:45,0,201 0/1:6,2:8:51:51,0,102 0/1:11,2:13:36:36,0,194 0/1:16,2:18:35:35,0,150 +chr19 46521447 . G C 226.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.009;DP=76;Dels=0.00;FS=28.056;HaplotypeScore=3.3176;MLEAC=4;MLEAF=0.500;MQ=28.85;MQ0=0;MQRankSum=2.574;QD=2.98;ReadPosRankSum=-0.662;SB=-1.228e-02 GT:AD:DP:GQ:PL 0/1:14,5:19:99:126,0,159 0/1:19,2:21:30:30,0,188 0/1:19,3:22:64:64,0,382 0/1:12,2:14:49:49,0,128 +chr19 46546154 rs116947721 T C 81.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.038;DB;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=8.0382;MLEAC=1;MLEAF=0.125;MQ=35.70;MQ0=0;MQRankSum=-1.358;QD=3.04;ReadPosRankSum=0.974;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/1:21,5:27:99:118,0,535 0/0:24,0:24:54:0,54,701 0/0:27,0:27:69:0,69,876 0/0:33,0:33:87:0,87,1133 +chr19 46812486 . C A 70.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.918;DP=58;Dels=0.00;FS=6.808;HaplotypeScore=11.0325;MLEAC=2;MLEAF=0.250;MQ=26.31;MQ0=0;MQRankSum=-0.398;QD=2.72;ReadPosRankSum=-0.156;SB=1.14 GT:AD:DP:GQ:PL 0/1:10,3:13:70:70,0,145 0/1:10,3:13:42:42,0,68 0/0:12,1:14:12:0,12,119 0/0:17,0:18:15:0,15,164 +chr19 47212593 rs10423365 A G 150.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.098;DB;DP=40;Dels=0.05;FS=0.000;HaplotypeScore=2.7913;MLEAC=4;MLEAF=0.500;MQ=20.20;MQ0=0;MQRankSum=1.909;QD=5.38;ReadPosRankSum=0.401;SB=-6.948e+01 GT:AD:DP:GQ:PL 1/1:4,3:7:6:82,6,0 0/0:11,1:12:6:0,6,47 0/1:12,2:14:59:59,0,130 0/1:2,3:5:32:54,0,32 +chr19 47226070 . T G 47.23 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.892;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=6.9878;MLEAC=4;MLEAF=0.500;MQ=18.92;MQ0=0;MQRankSum=-0.600;QD=0.91;ReadPosRankSum=-1.736;SB=-1.391e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:30:30,0,77 0/1:8,2:10:10:10,0,77 0/1:12,3:15:11:11,0,83 0/1:12,4:16:38:38,0,82 +chr19 47549767 . A G 54.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.729;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=1.9636;MLEAC=1;MLEAF=0.125;MQ=31.10;MQ0=0;MQRankSum=-1.212;QD=1.57;ReadPosRankSum=0.934;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:30,0:30:75:0,75,903 0/0:33,0:33:66:0,66,801 0/0:33,0:33:78:0,78,1004 0/1:30,5:35:91:91,0,436 +chr19 47879250 . A C 33.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.999;DP=97;Dels=0.02;FS=12.870;HaplotypeScore=11.5660;MLEAC=2;MLEAF=0.250;MQ=24.93;MQ0=0;MQRankSum=-0.007;QD=0.58;ReadPosRankSum=-1.076;SB=-1.141e+00 GT:AD:DP:GQ:PL 0/0:18,0:18:39:0,39,409 0/0:20,1:21:7:0,7,306 0/1:25,4:29:60:60,0,378 0/1:22,4:27:14:14,0,310 +chr19 47885180 rs889167 A G 480.78 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.042;DB;DP=35;Dels=0.03;FS=16.250;HaplotypeScore=6.0512;MLEAC=7;MLEAF=0.875;MQ=25.23;MQ0=0;MQRankSum=2.068;QD=13.74;ReadPosRankSum=0.203;SB=7.98 GT:AD:DP:GQ:PL 1/1:4,7:12:12:143,12,0 1/1:2,5:7:12:135,12,0 1/1:3,6:9:18:202,18,0 1/1:5,1:6:3:39,3,0 +chr19 48006816 . C T 267.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.417;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.5301;MLEAC=4;MLEAF=0.500;MQ=28.18;MQ0=0;MQRankSum=-2.817;QD=4.61;ReadPosRankSum=1.800;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:64:82,0,64 0/1:11,4:15:75:75,0,205 0/1:12,5:17:77:77,0,280 0/1:7,8:15:76:76,0,176 +chr19 48202125 rs7248050 C G 132.55 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.609;DB;DP=20;Dels=0.05;FS=8.495;HaplotypeScore=0.6217;MLEAC=4;MLEAF=0.500;MQ=29.23;MQ0=0;MQRankSum=-0.234;QD=10.20;ReadPosRankSum=0.983;SB=-5.689e+01 GT:AD:DP:GQ:PL 0/0:7,0:7:12:0,12,148 1/1:0,3:3:9:96,9,0 0/1:2,2:4:57:57,0,57 0/1:4,1:5:26:26,0,61 +chr19 48244045 rs74761944 C T 72.40 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.783;DB;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.8947;MLEAC=2;MLEAF=0.250;MQ=21.59;MQ0=0;MQRankSum=-1.306;QD=4.83;ReadPosRankSum=-1.902;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:19:19,0,91 0/0:5,0:6:3:0,3,36 0/1:5,4:9:58:92,0,58 0/0:5,1:6:3:0,3,27 +chr19 48248763 . A G 66.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.041;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9849;MLEAC=4;MLEAF=0.500;MQ=26.88;MQ0=0;MQRankSum=-0.257;QD=1.01;ReadPosRankSum=1.096;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:34:34,0,195 0/1:16,1:17:15:15,0,99 0/1:20,3:24:38:38,0,319 0/1:5,1:6:22:22,0,61 +chr19 48389425 rs11083907 A G 7676.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.392;DB;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=2.4354;MLEAC=8;MLEAF=1.00;MQ=33.24;MQ0=0;MQRankSum=0.979;QD=31.59;ReadPosRankSum=2.587;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:4,62:66:99:2142,104,0 1/1:4,61:65:99:2125,148,0 1/1:5,63:68:99:2240,180,0 1/1:6,38:44:68:1169,68,0 +chr19 48517645 . A G 127.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.144;DP=91;Dels=0.01;FS=7.284;HaplotypeScore=8.4725;MLEAC=3;MLEAF=0.375;MQ=28.69;MQ0=0;MQRankSum=-1.357;QD=1.82;ReadPosRankSum=1.777;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,4:21:79:79,0,212 0/1:21,4:25:71:71,0,314 0/0:19,1:20:13:0,13,344 0/1:20,3:24:20:20,0,291 +chr19 48598823 rs156631 A G 1604.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=5.293;DB;DP=254;Dels=0.01;FS=17.614;HaplotypeScore=11.1137;MLEAC=3;MLEAF=0.375;MQ=33.99;MQ0=0;MQRankSum=-5.149;QD=8.77;ReadPosRankSum=2.539;SB=-4.150e+02 GT:AD:DP:GQ:PL 0/0:71,0:71:99:0,138,1740 0/1:40,22:62:99:616,0,952 0/1:39,26:65:99:650,0,889 0/1:36,17:53:99:382,0,660 +chr19 48630700 rs144032282 GCC G 1294.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.973;DB;DP=95;FS=0.000;HaplotypeScore=30.3256;MLEAC=3;MLEAF=0.375;MQ=30.99;MQ0=0;MQRankSum=-0.326;QD=18.24;RPA=4,2;RU=C;ReadPosRankSum=1.748;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:23,0:23:66:0,66,1083 0/1:16,6:16:99:208,0,366 0/1:9,11:20:99:454,0,292 0/1:14,14:27:99:685,0,378 +chr19 48654563 . G C 58.18 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.956;DP=50;Dels=0.02;FS=8.742;HaplotypeScore=4.7127;MLEAC=2;MLEAF=0.250;MQ=24.61;MQ0=0;MQRankSum=0.825;QD=2.24;ReadPosRankSum=0.684;SB=1.47 GT:AD:DP:GQ:PL 0/1:11,1:12:16:16,0,135 0/0:12,1:13:12:0,12,142 0/1:10,3:13:22:83,0,22 0/0:11,0:11:15:0,15,149 +chr19 48733621 . A T 48.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.500;DP=82;Dels=0.02;FS=0.000;HaplotypeScore=6.4091;MLEAC=2;MLEAF=0.250;MQ=31.12;MQ0=0;MQRankSum=-2.379;QD=1.22;ReadPosRankSum=2.108;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,1:20:12:0,12,446 0/0:21,0:21:39:0,39,466 0/1:22,3:25:24:24,0,369 0/1:9,4:14:66:66,0,111 +chr19 48734018 rs2304134 G A 385.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.084;DB;DP=177;Dels=0.01;FS=9.149;HaplotypeScore=2.8852;MLEAC=1;MLEAF=0.125;MQ=33.18;MQ0=0;MQRankSum=-1.942;QD=9.65;ReadPosRankSum=0.180;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,144,1710 0/1:24,15:39:99:422,0,406 0/0:40,1:41:77:0,77,1169 0/0:45,0:45:99:0,114,1323 +chr19 48785770 . T A 227.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.373;DP=96;Dels=0.00;FS=15.103;HaplotypeScore=13.8291;MLEAC=4;MLEAF=0.500;MQ=27.46;MQ0=0;MQRankSum=-1.818;QD=2.37;ReadPosRankSum=0.717;SB=-1.203e-02 GT:AD:DP:GQ:PL 0/1:18,5:24:99:117,0,261 0/1:16,5:23:43:43,0,374 0/1:20,5:28:61:61,0,440 0/1:16,5:21:49:49,0,243 +chr19 48807240 . G T 266.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.078;DP=121;Dels=0.01;FS=29.829;HaplotypeScore=14.6977;MLEAC=4;MLEAF=0.500;MQ=30.01;MQ0=0;MQRankSum=0.253;QD=2.20;ReadPosRankSum=2.902;SB=-4.419e-01 GT:AD:DP:GQ:PL 0/1:18,3:21:40:40,0,392 0/1:30,3:33:9:9,0,438 0/1:32,3:35:46:46,0,550 0/1:22,9:31:99:213,0,219 +chr19 48908011 . G C 90.06 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.504;DP=159;Dels=0.03;FS=4.434;HaplotypeScore=7.8690;MLEAC=3;MLEAF=0.375;MQ=31.83;MQ0=0;MQRankSum=-4.439;QD=0.77;ReadPosRankSum=-2.376;SB=-4.811e-02 GT:AD:DP:GQ:PL 0/1:36,4:40:14:14,0,898 0/0:37,3:40:30:0,30,887 0/1:34,4:38:29:29,0,748 0/1:30,7:37:90:90,0,557 +chr19 48950126 rs73942276 C A 49.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.314;DB;DP=107;Dels=0.00;FS=2.299;HaplotypeScore=1.7022;MLEAC=1;MLEAF=0.125;MQ=34.86;MQ0=0;MQRankSum=-2.314;QD=2.13;ReadPosRankSum=2.250;SB=-1.130e+00 GT:AD:DP:GQ:PL 0/0:20,1:21:12:0,12,401 0/0:24,0:24:36:0,36,473 0/0:38,1:39:51:0,51,883 0/1:18,5:23:85:85,0,450 +chr19 48956240 . G T 232.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.206;DP=63;Dels=0.00;FS=116.470;HaplotypeScore=5.0709;MLEAC=4;MLEAF=0.500;MQ=31.41;MQ0=0;MQRankSum=-3.309;QD=3.69;ReadPosRankSum=-0.710;SB=4.13 GT:AD:DP:GQ:PL 0/1:9,4:13:99:99,0,196 0/1:7,4:11:27:27,0,151 0/1:16,7:23:99:126,0,395 0/1:11,5:16:23:23,0,334 +chr19 48967687 . C A 34.41 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.795;DP=61;Dels=0.00;FS=30.288;HaplotypeScore=2.9108;MLEAC=2;MLEAF=0.250;MQ=34.66;MQ0=0;MQRankSum=-2.281;QD=1.15;ReadPosRankSum=1.525;SB=-2.004e+00 GT:AD:DP:GQ:PL 0/0:13,0:13:39:0,39,559 0/1:12,2:14:28:28,0,254 0/1:13,3:16:47:47,0,338 0/0:17,1:18:5:0,5,422 +chr19 48968011 . C A 65.91 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.497;DP=191;Dels=0.00;FS=46.932;HaplotypeScore=6.1940;MLEAC=2;MLEAF=0.250;MQ=33.75;MQ0=0;MQRankSum=-1.120;QD=0.66;ReadPosRankSum=-0.985;SB=-1.173e+00 GT:AD:DP:GQ:PL 0/0:52,2:54:42:0,42,1172 0/0:36,1:37:16:0,16,447 0/1:50,3:53:17:17,0,785 0/1:41,6:47:90:90,0,877 +chr19 49013538 . T G 49.19 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.782;DP=29;Dels=0.03;FS=2.644;HaplotypeScore=0.9563;MLEAC=4;MLEAF=0.500;MQ=24.20;MQ0=0;MQRankSum=0.426;QD=1.70;ReadPosRankSum=1.848;SB=-2.736e-01 GT:AD:DP:GQ:PL 0/1:1,1:2:26:26,0,26 0/1:6,2:8:35:35,0,116 0/1:10,1:11:8:8,0,193 0/1:6,1:7:18:22,0,18 +chr19 49090704 . A T 39.47 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.647;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.1720;MLEAC=2;MLEAF=0.250;MQ=31.50;MQ0=0;MQRankSum=-0.614;QD=0.69;ReadPosRankSum=-1.962;SB=-6.860e-03 GT:AD:DP:GQ:PL 0/0:24,1:25:12:0,12,543 0/0:30,1:31:26:0,26,558 0/1:25,3:28:4:4,0,727 0/1:23,6:29:73:73,0,381 +chr19 49110308 . T A 42.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.121;DP=101;Dels=0.00;FS=16.464;HaplotypeScore=14.3769;MLEAC=3;MLEAF=0.375;MQ=30.30;MQ0=0;MQRankSum=-2.685;QD=0.62;ReadPosRankSum=0.774;SB=0.058 GT:AD:DP:GQ:PL 0/1:20,2:22:41:41,0,205 0/1:17,5:22:30:30,0,212 0/0:33,0:33:30:0,30,371 0/1:22,2:24:14:14,0,186 +chr19 49136628 . T A 32.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.172;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=8.4160;MLEAC=1;MLEAF=0.125;MQ=24.44;MQ0=0;MQRankSum=-0.384;QD=0.63;ReadPosRankSum=-0.085;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:44,3:47:20:0,20,641 0/1:46,5:51:68:68,0,382 0/0:48,1:49:43:0,43,656 0/0:35,1:36:23:0,23,406 +chr19 49143111 . G A 126.88 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.341;DP=85;Dels=0.00;FS=87.493;HaplotypeScore=1.9920;MLEAC=4;MLEAF=0.500;MQ=34.03;MQ0=0;MQRankSum=-2.453;QD=1.49;ReadPosRankSum=-0.751;SB=-1.394e+00 GT:AD:DP:GQ:PL 0/1:18,4:22:68:68,0,625 0/1:18,2:20:23:23,0,393 0/1:17,2:19:11:11,0,541 0/1:20,4:24:67:67,0,416 +chr19 49143337 . A T 37.54 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.567;DP=137;Dels=0.00;FS=38.152;HaplotypeScore=13.9583;MLEAC=3;MLEAF=0.375;MQ=29.46;MQ0=0;MQRankSum=-2.936;QD=0.37;ReadPosRankSum=1.019;SB=-1.144e+00 GT:AD:DP:GQ:PL 0/1:27,2:29:4:4,0,503 0/1:31,4:35:11:11,0,473 0/1:33,5:38:63:63,0,569 0/0:33,2:35:30:0,30,568 +chr19 49261209 . G C 496.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.519;DP=256;Dels=0.00;FS=323.813;HaplotypeScore=20.8068;MLEAC=4;MLEAF=0.500;MQ=28.43;MQ0=0;MQRankSum=-4.700;QD=1.94;ReadPosRankSum=1.773;SB=0.207 GT:AD:DP:GQ:PL 0/1:51,8:60:99:119,0,1025 0/1:59,11:70:99:111,0,1135 0/1:55,13:68:99:112,0,1101 0/1:42,16:58:99:197,0,623 +chr19 49392867 rs147078776 C G 966.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.929;DB;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7247;MLEAC=3;MLEAF=0.375;MQ=34.05;MQ0=0;MQRankSum=-4.726;QD=9.97;ReadPosRankSum=0.819;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:23,12:35:99:228,0,715 0/0:36,0:37:99:0,108,1403 0/1:21,15:36:99:404,0,650 0/1:13,13:26:99:378,0,237 +chr19 49438433 rs4987162 C G 77.70 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.754;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.3856;MLEAC=3;MLEAF=0.500;MQ=29.19;MQ0=0;MQRankSum=0.937;QD=15.54;ReadPosRankSum=1.300;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,1:3:35:35,0,38 0/0:3,0:3:3:0,3,35 ./. 1/1:0,2:2:6:82,6,0 +chr19 49447629 . T G 110.79 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.951;DP=149;Dels=0.00;FS=56.074;HaplotypeScore=1.8614;MLEAC=2;MLEAF=0.250;MQ=32.57;MQ0=0;MQRankSum=-1.119;QD=1.73;ReadPosRankSum=0.394;SB=-2.866e+00 GT:AD:DP:GQ:PL 0/1:28,3:31:28:28,0,708 0/0:35,3:38:0:0,0,905 0/0:45,2:47:50:0,50,1146 0/1:26,7:33:99:122,0,633 +chr19 49474188 . A C 64.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.575;DP=100;Dels=0.03;FS=16.062;HaplotypeScore=19.5016;MLEAC=3;MLEAF=0.375;MQ=30.92;MQ0=0;MQRankSum=-1.605;QD=0.90;ReadPosRankSum=-1.291;SB=-5.976e+00 GT:AD:DP:GQ:PL 0/1:19,3:23:31:31,0,397 0/1:17,5:22:49:49,0,357 0/0:23,2:26:51:0,51,656 0/1:24,2:26:28:28,0,386 +chr19 49573362 rs10535426 TGGA T 1096.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.888;DB;DP=92;FS=1.289;HaplotypeScore=24.6000;MLEAC=3;MLEAF=0.375;MQ=26.50;MQ0=0;MQRankSum=-0.256;QD=13.88;ReadPosRankSum=-0.256;SB=-2.250e+02 GT:AD:DP:GQ:PL 0/0:13,0:10:27:0,27,493 0/1:16,11:18:99:369,0,361 0/1:23,9:26:99:411,0,718 0/1:12,6:15:99:369,0,215 +chr19 49643254 . G A 162.26 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.393;DP=219;Dels=0.01;FS=256.172;HaplotypeScore=9.1679;MLEAC=4;MLEAF=0.500;MQ=30.89;MQ0=0;MQRankSum=-5.867;QD=0.74;ReadPosRankSum=-1.597;SB=-6.709e-01 GT:AD:DP:GQ:PL 0/1:47,6:53:29:29,0,1268 0/1:46,9:55:7:7,0,1222 0/1:39,11:50:99:137,0,1078 0/1:48,10:58:31:31,0,1524 +chr19 49651954 . A T 182.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.829;DP=97;Dels=0.00;FS=25.839;HaplotypeScore=0.2495;MLEAC=3;MLEAF=0.375;MQ=35.43;MQ0=0;MQRankSum=-0.588;QD=2.50;ReadPosRankSum=1.433;SB=3.39 GT:AD:DP:GQ:PL 0/1:22,4:26:58:58,0,385 0/0:23,1:24:24:0,24,509 0/1:24,4:28:31:31,0,503 0/1:14,5:19:99:137,0,216 +chr19 49652768 . G A 72.28 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.940;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.6354;MLEAC=2;MLEAF=0.250;MQ=27.83;MQ0=0;MQRankSum=-0.783;QD=4.25;ReadPosRankSum=0.235;SB=0.038 GT:AD:DP:GQ:PL 0/1:6,3:9:45:65,0,45 0/0:9,0:9:18:0,18,201 0/0:7,0:7:6:0,6,66 0/1:6,2:8:21:48,0,21 +chr19 49674495 rs1477363 C A 398.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.433;DB;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5564;MLEAC=3;MLEAF=0.375;MQ=32.19;MQ0=0;MQRankSum=0.039;QD=9.28;ReadPosRankSum=-0.077;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,9:19:99:290,0,146 0/0:16,0:16:45:0,45,540 0/1:11,5:16:99:135,0,243 0/1:7,1:8:17:17,0,168 +chr19 49674774 . G T 180.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.128;DP=87;Dels=0.00;FS=12.636;HaplotypeScore=2.7074;MLEAC=4;MLEAF=0.500;MQ=29.48;MQ0=0;MQRankSum=-2.715;QD=2.08;ReadPosRankSum=1.136;SB=-1.470e-02 GT:AD:DP:GQ:PL 0/1:16,5:21:97:97,0,302 0/1:18,4:22:56:56,0,296 0/1:19,3:22:39:39,0,379 0/1:19,3:22:31:31,0,200 +chr19 49812403 rs2278405 G T 954.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.566;DB;DP=228;Dels=0.00;FS=8.648;HaplotypeScore=1.2199;MLEAC=1;MLEAF=0.125;MQ=38.07;MQ0=0;MQRankSum=-4.430;QD=14.25;ReadPosRankSum=0.629;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,166,2228 0/1:36,31:67:99:991,0,1107 0/0:53,0:53:99:0,144,1920 0/0:52,0:52:99:0,147,1935 +chr19 49838971 . G A 167.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.914;DP=281;Dels=0.00;FS=105.837;HaplotypeScore=7.3750;MLEAC=3;MLEAF=0.375;MQ=35.12;MQ0=0;MQRankSum=-3.969;QD=0.79;ReadPosRankSum=1.461;SB=-2.629e+00 GT:AD:DP:GQ:PL 0/1:64,9:73:99:152,0,1581 0/0:66,4:70:33:0,33,1624 0/1:66,6:72:1:1,0,2024 0/1:59,7:66:54:54,0,1581 +chr19 49862661 . C A 47.18 . AC=1;AF=0.125;AN=8;BaseQRankSum=-6.918;DP=394;Dels=0.00;FS=174.802;HaplotypeScore=17.1315;MLEAC=1;MLEAF=0.125;MQ=38.16;MQ0=0;MQRankSum=-6.034;QD=0.51;ReadPosRankSum=-3.026;SB=-6.615e+00 GT:AD:DP:GQ:PL 0/0:103,5:110:99:0,155,3360 0/0:85,7:93:30:0,30,2450 0/0:85,9:98:8:0,8,2384 0/1:81,12:93:83:83,0,2363 +chr19 49936220 . G T 30.11 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.141;DP=31;Dels=0.03;FS=17.779;HaplotypeScore=1.2175;MLEAC=5;MLEAF=0.625;MQ=26.44;MQ0=0;MQRankSum=-1.974;QD=0.97;ReadPosRankSum=1.762;SB=0.203 GT:AD:DP:GQ:PL 0/1:3,2:6:20:20,0,65 0/1:6,1:7:20:20,0,103 0/1:8,3:11:8:8,0,129 1/1:5,1:6:3:24,3,0 +chr19 49938588 . C A 220 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.515;DP=235;Dels=0.01;FS=0.000;HaplotypeScore=5.8849;MLEAC=1;MLEAF=0.125;MQ=34.09;MQ0=0;MQRankSum=0.127;QD=4.58;ReadPosRankSum=0.599;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:59,1:60:96:0,96,1318 0/0:64,1:65:99:0,111,1569 0/0:56,3:59:24:0,24,1432 0/1:36,11:48:99:256,0,562 +chr19 49954822 . G C 240.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.647;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.3194;MLEAC=4;MLEAF=0.500;MQ=29.96;MQ0=0;MQRankSum=-0.865;QD=2.21;ReadPosRankSum=1.632;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,5:24:99:105,0,267 0/1:25,5:30:63:63,0,515 0/1:25,4:29:15:15,0,503 0/1:20,6:26:99:100,0,240 +chr19 49979893 rs3826717 A G 655.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.924;DB;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6540;MLEAC=3;MLEAF=0.375;MQ=40.76;MQ0=0;MQRankSum=-2.434;QD=15.61;ReadPosRankSum=1.100;SB=-1.149e-02 GT:AD:DP:GQ:PL 0/1:6,3:10:96:96,0,222 0/0:15,0:15:42:0,42,562 0/1:5,10:15:99:325,0,117 0/1:9,8:17:99:278,0,242 +chr19 49990060 rs1879266 C G 168.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.304;DB;DP=39;Dels=0.00;FS=9.587;HaplotypeScore=1.7456;MLEAC=3;MLEAF=0.375;MQ=33.68;MQ0=0;MQRankSum=-1.279;QD=5.82;ReadPosRankSum=0.061;SB=-4.983e+01 GT:AD:DP:GQ:PL 0/1:7,4:13:99:108,0,189 0/0:10,0:10:24:0,24,301 0/1:8,2:10:54:54,0,176 0/1:4,2:6:50:50,0,113 +chr19 49999647 rs17555056 C G 340.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.894;DB;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=31.23;MQ0=0;MQRankSum=0.399;QD=10.33;ReadPosRankSum=-0.316;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,7:11:99:179,0,107 0/0:8,0:8:21:0,21,209 0/1:8,6:14:99:180,0,230 0/1:7,1:8:25:25,0,126 +chr19 50017639 . A C 38.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.082;DP=34;Dels=0.00;FS=13.900;HaplotypeScore=0.9868;MLEAC=2;MLEAF=0.250;MQ=30.43;MQ0=0;MQRankSum=-1.263;QD=2.41;ReadPosRankSum=-2.832;SB=-9.327e-01 GT:AD:DP:GQ:PL 0/0:6,0:6:9:0,9,119 0/1:7,1:8:6:6,0,157 0/0:12,0:12:24:0,24,315 0/1:5,3:8:71:71,0,105 +chr19 50086595 . T G 163.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.680;DP=61;Dels=0.00;FS=11.873;HaplotypeScore=11.2930;MLEAC=3;MLEAF=0.375;MQ=23.41;MQ0=0;MQRankSum=-1.945;QD=3.09;ReadPosRankSum=0.966;SB=2.41 GT:AD:DP:GQ:PL 0/1:13,6:19:53:119,0,53 0/1:13,4:17:32:32,0,90 0/1:11,6:17:54:54,0,134 0/0:7,1:8:3:0,3,32 +chr19 50098428 . A C 40.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.434;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=5.6595;MLEAC=3;MLEAF=0.375;MQ=20.27;MQ0=0;MQRankSum=0.584;QD=1.67;ReadPosRankSum=-0.796;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:17:17,0,33 0/0:3,0:3:3:0,3,23 0/1:8,1:9:16:16,0,31 0/1:6,2:8:18:48,0,18 +chr19 50124663 rs73058085 G A 144.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.077;DB;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=25.35;MQ0=0;MQRankSum=-1.312;QD=9.05;ReadPosRankSum=0.386;SB=-5.709e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:78,6,0 0/1:2,4:6:33:52,0,33 0/1:4,3:8:57:58,0,57 0/0:2,0:2:3:0,3,36 +chr19 50161425 . G C 68.04 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.474;DP=22;Dels=0.05;FS=2.884;HaplotypeScore=3.7866;MLEAC=2;MLEAF=0.250;MQ=25.73;MQ0=0;MQRankSum=-0.369;QD=5.67;ReadPosRankSum=0.474;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,42 0/0:5,0:5:12:0,12,143 0/1:2,3:5:16:55,0,16 0/1:4,2:6:29:53,0,29 +chr19 50299053 . C A 43.69 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.115;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.8574;MLEAC=5;MLEAF=0.625;MQ=27.80;MQ0=0;MQRankSum=-0.537;QD=1.68;ReadPosRankSum=1.445;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,1:11:23:23,0,129 0/1:4,2:6:17:17,0,128 0/1:3,1:4:21:21,0,92 1/1:4,1:5:3:25,3,0 +chr19 50302226 . A T 152.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.684;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=12.7137;MLEAC=3;MLEAF=0.375;MQ=26.30;MQ0=0;MQRankSum=-0.964;QD=1.90;ReadPosRankSum=2.014;SB=-4.150e+01 GT:AD:DP:GQ:PL 0/1:24,2:26:6:6,0,338 0/1:20,8:29:99:117,0,345 0/0:24,1:25:54:0,54,521 0/1:20,5:25:71:71,0,196 +chr19 50331741 . T G 33.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.741;DP=77;Dels=0.03;FS=8.041;HaplotypeScore=9.9565;MLEAC=2;MLEAF=0.250;MQ=26.91;MQ0=0;MQRankSum=0.071;QD=0.82;ReadPosRankSum=-1.059;SB=2.20 GT:AD:DP:GQ:PL 0/0:13,0:14:24:0,24,256 0/0:21,0:22:18:0,18,181 0/1:19,3:23:32:32,0,426 0/1:14,2:16:41:43,0,41 +chr19 50363362 . C T 126.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.894;DP=120;Dels=0.00;FS=23.163;HaplotypeScore=0.9945;MLEAC=3;MLEAF=0.375;MQ=36.25;MQ0=0;MQRankSum=-3.969;QD=1.44;ReadPosRankSum=0.257;SB=-1.928e-02 GT:AD:DP:GQ:PL 0/1:20,5:25:99:102,0,511 0/1:32,4:36:29:29,0,782 0/0:31,1:32:55:0,55,948 0/1:22,5:27:39:39,0,555 +chr19 50383636 rs3745486 T C 88.14 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.581;DB;DP=91;Dels=0.02;FS=4.727;HaplotypeScore=12.3067;MLEAC=2;MLEAF=0.250;MQ=28.51;MQ0=0;MQRankSum=-1.707;QD=1.80;ReadPosRankSum=0.454;SB=-4.288e+01 GT:AD:DP:GQ:PL 0/0:19,0:20:28:0,28,350 0/0:22,0:22:30:0,30,340 0/1:20,1:21:9:9,0,230 0/1:19,6:26:99:119,0,100 +chr19 50384803 . G T 86.09 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.433;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.9160;MLEAC=5;MLEAF=0.625;MQ=21.78;MQ0=0;MQRankSum=-0.241;QD=4.30;ReadPosRankSum=1.010;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,2:5:6:63,6,0 0/0:7,1:8:12:0,12,102 1/1:5,3:9:6:54,6,0 0/1:3,2:6:16:16,0,47 +chr19 50387529 . T C 44.18 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.039;DP=147;Dels=0.00;FS=17.900;HaplotypeScore=2.4717;MLEAC=2;MLEAF=0.250;MQ=33.68;MQ0=0;MQRankSum=-3.469;QD=0.61;ReadPosRankSum=-0.163;SB=0.040 GT:AD:DP:GQ:PL 0/1:31,3:34:15:15,0,662 0/1:32,6:38:70:70,0,730 0/0:40,0:40:99:0,99,1220 0/0:33,2:35:12:0,12,654 +chr19 50394482 . C T 50.79 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.480;DP=39;Dels=0.00;FS=2.460;HaplotypeScore=3.0730;MLEAC=5;MLEAF=0.625;MQ=18.08;MQ0=0;MQRankSum=2.339;QD=1.30;ReadPosRankSum=-0.960;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,1:14:25:25,0,51 0/1:8,2:10:16:22,0,16 1/1:9,1:10:3:24,3,0 0/1:4,1:5:16:22,0,16 +chr19 50412217 rs79747934 C G 140.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.489;DB;DP=53;Dels=0.00;FS=6.929;HaplotypeScore=1.0889;MLEAC=3;MLEAF=0.375;MQ=21.56;MQ0=0;MQRankSum=-0.684;QD=3.52;ReadPosRankSum=0.969;SB=-4.731e+01 GT:AD:DP:GQ:PL 0/0:13,0:13:24:0,24,226 0/1:2,10:12:21:70,0,21 0/1:6,3:9:23:28,0,23 0/1:13,6:19:86:86,0,87 +chr19 50812312 . G A 74.05 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.652;DP=61;Dels=0.02;FS=2.496;HaplotypeScore=14.2118;MLEAC=2;MLEAF=0.250;MQ=25.40;MQ0=0;MQRankSum=-1.269;QD=3.09;ReadPosRankSum=-0.157;SB=0.924 GT:AD:DP:GQ:PL 0/1:6,5:11:95:95,0,126 0/1:10,2:12:20:20,0,124 0/0:20,1:21:27:0,27,314 0/0:16,0:16:9:0,9,107 +chr19 50926742 rs3745516 A G 752.39 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.739;DB;DP=31;Dels=0.00;FS=20.682;HaplotypeScore=1.7470;MLEAC=8;MLEAF=1.00;MQ=29.99;MQ0=0;MQRankSum=2.739;QD=24.27;ReadPosRankSum=-1.273;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,9:12:27:354,27,0 1/1:3,3:6:6:74,6,0 1/1:1,7:8:18:215,18,0 1/1:0,5:5:12:148,12,0 +chr19 51016633 . T G 34.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.435;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=1.2470;MLEAC=2;MLEAF=0.250;MQ=36.31;MQ0=0;MQRankSum=-1.907;QD=1.28;ReadPosRankSum=-1.221;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:30:0,30,386 0/1:13,2:15:25:25,0,298 0/0:13,0:13:30:0,30,380 0/1:9,2:11:51:51,0,168 +chr19 51022001 . G A 120.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.204;DP=75;Dels=0.00;FS=58.424;HaplotypeScore=5.8742;MLEAC=4;MLEAF=0.500;MQ=30.32;MQ0=0;MQRankSum=-3.278;QD=1.61;ReadPosRankSum=2.219;SB=-8.751e-02 GT:AD:DP:GQ:PL 0/1:18,4:22:44:44,0,359 0/1:10,3:13:28:28,0,249 0/1:20,5:25:74:74,0,500 0/1:12,3:15:17:17,0,297 +chr19 51132979 rs10406994 G A 129.73 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.366;DB;DP=28;Dels=0.00;FS=7.877;HaplotypeScore=0.8541;MLEAC=8;MLEAF=1.00;MQ=13.39;MQ0=0;MQRankSum=1.201;QD=4.63;ReadPosRankSum=0.679;SB=-2.462e+01 GT:AD:DP:GQ:PL 1/1:3,8:11:6:46,6,0 1/1:2,2:4:3:22,3,0 1/1:1,7:8:6:54,6,0 1/1:0,5:5:6:45,6,0 +chr19 51200920 . T G 58.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.374;DP=194;Dels=0.01;FS=0.000;HaplotypeScore=9.1823;MLEAC=2;MLEAF=0.250;MQ=30.42;MQ0=0;MQRankSum=-3.122;QD=0.62;ReadPosRankSum=-1.697;SB=0.072 GT:AD:DP:GQ:PL 0/1:41,7:48:60:60,0,636 0/1:43,4:47:40:40,0,708 0/0:51,3:55:20:0,20,828 0/0:43,0:43:75:0,75,807 +chr19 51301489 . A C 846.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.287;DP=202;Dels=0.00;FS=154.564;HaplotypeScore=9.0469;MLEAC=4;MLEAF=0.500;MQ=33.74;MQ0=0;MQRankSum=2.499;QD=4.19;ReadPosRankSum=3.084;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:38,9:47:99:228,0,945 0/1:43,8:51:99:174,0,1039 0/1:42,10:52:99:222,0,1080 0/1:41,11:52:99:265,0,798 +chr19 51363448 rs1058274 A G 480.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.812;DB;DP=163;Dels=0.01;FS=0.000;HaplotypeScore=1.8547;MLEAC=1;MLEAF=0.125;MQ=35.19;MQ0=0;MQRankSum=-1.720;QD=11.19;ReadPosRankSum=1.352;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,129,1661 0/1:24,17:42:99:517,0,690 0/0:44,0:44:99:0,114,1457 0/0:28,0:28:72:0,72,882 +chr19 51379741 . T A 169.69 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.938;DP=94;Dels=0.01;FS=71.668;HaplotypeScore=12.3551;MLEAC=2;MLEAF=0.250;MQ=28.01;MQ0=0;MQRankSum=-0.800;QD=3.86;ReadPosRankSum=-0.731;SB=-9.363e-01 GT:AD:DP:GQ:PL 0/0:21,1:22:20:0,20,426 0/0:24,3:27:14:0,14,458 0/1:18,5:23:99:109,0,281 0/1:17,4:21:99:102,0,160 +chr19 51483724 . C A 139.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.276;DP=83;Dels=0.00;FS=23.545;HaplotypeScore=6.8802;MLEAC=4;MLEAF=0.500;MQ=31.49;MQ0=0;MQRankSum=1.510;QD=1.69;ReadPosRankSum=0.088;SB=-2.187e-01 GT:AD:DP:GQ:PL 0/1:22,3:27:44:44,0,387 0/1:13,3:16:68:68,0,170 0/1:20,3:24:59:59,0,263 0/1:15,1:16:11:11,0,121 +chr19 51535380 . A T 44.06 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.531;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.6637;MLEAC=3;MLEAF=0.500;MQ=28.08;MQ0=0;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-0.978;SB=-2.932e+01 GT:AD:DP:GQ:PL 0/1:2,1:3:22:22,0,37 1/1:1,2:3:6:63,6,0 0/0:5,0:5:9:0,9,99 ./. +chr19 51633143 . C T 170.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.933;DP=148;Dels=0.01;FS=141.958;HaplotypeScore=19.2427;MLEAC=3;MLEAF=0.375;MQ=23.51;MQ0=0;MQRankSum=-1.806;QD=1.53;ReadPosRankSum=-2.001;SB=-1.158e+00 GT:AD:DP:GQ:PL 0/0:32,4:36:23:0,23,415 0/1:36,4:40:23:23,0,330 0/1:33,6:39:81:81,0,368 0/1:20,11:32:99:110,0,171 +chr19 51647319 rs112880201 C A 293.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.777;DB;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.1663;MLEAC=3;MLEAF=0.375;MQ=23.12;MQ0=0;MQRankSum=2.364;QD=4.02;ReadPosRankSum=-0.742;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/0:29,0:29:39:0,39,383 0/1:18,4:22:51:51,0,178 0/1:21,8:29:99:197,0,240 0/1:17,4:22:89:89,0,117 +chr19 51738981 . C A 36.66 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.614;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=2.3878;MLEAC=1;MLEAF=0.125;MQ=20.59;MQ0=0;MQRankSum=0.803;QD=3.06;ReadPosRankSum=0.992;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:6:0,6,65 0/0:5,0:5:3:0,3,29 0/0:7,0:7:3:0,3,38 0/1:8,4:12:40:71,0,40 +chr19 51874950 rs3009 G A 1146.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.870;DB;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0508;MLEAC=5;MLEAF=0.625;MQ=30.39;MQ0=0;MQRankSum=-1.122;QD=8.89;ReadPosRankSum=-0.394;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:19,11:30:99:234,0,522 1/1:3,23:26:35:635,35,0 0/1:31,6:37:62:62,0,921 0/1:23,13:36:99:261,0,512 +chr19 51920613 rs1010425 C T 3364.01 . AC=6;AF=0.750;AN=8;BaseQRankSum=4.357;DB;DP=153;Dels=0.00;FS=2.403;HaplotypeScore=2.6656;MLEAC=6;MLEAF=0.750;MQ=27.75;MQ0=0;MQRankSum=0.189;QD=21.99;ReadPosRankSum=4.789;SB=-1.622e+03 GT:AD:DP:GQ:PL 0/1:6,33:39:10:739,0,10 1/1:3,35:38:90:1084,90,0 1/1:5,35:40:43:838,43,0 0/1:7,29:36:7:703,0,7 +chr19 52003058 rs10420446 C T 1343.11 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.600;DB;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7322;MLEAC=8;MLEAF=1.00;MQ=28.60;MQ0=0;MQRankSum=3.564;QD=26.34;ReadPosRankSum=0.953;SB=-4.501e+02 GT:AD:DP:GQ:PL 1/1:1,9:10:27:315,27,0 1/1:5,10:15:10:319,10,0 1/1:1,11:12:30:375,30,0 1/1:3,11:14:33:373,33,0 +chr19 52048516 . A T 49.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.652;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.4894;MLEAC=4;MLEAF=0.500;MQ=25.12;MQ0=0;MQRankSum=-0.361;QD=5.48;ReadPosRankSum=0.361;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:22,3,0 0/1:3,1:4:23:23,0,38 0/1:2,2:4:34:46,0,34 0/0:3,0:3:3:0,3,39 +chr19 52249211 rs867228 T G 6278.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.478;DB;DP=244;Dels=0.00;FS=13.087;HaplotypeScore=3.4419;MLEAC=7;MLEAF=0.875;MQ=33.16;MQ0=0;MQRankSum=0.098;QD=25.73;ReadPosRankSum=2.758;SB=-2.151e+03 GT:AD:DP:GQ:PL 0/1:40,22:62:99:586,0,1019 1/1:4,59:63:92:2028,92,0 1/1:6,55:61:74:1892,74,0 1/1:6,52:58:99:1772,122,0 +chr19 52447654 . A C 36.65 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.931;DP=250;Dels=0.00;FS=24.295;HaplotypeScore=3.3882;MLEAC=2;MLEAF=0.250;MQ=31.45;MQ0=0;MQRankSum=0.959;QD=0.43;ReadPosRankSum=-1.643;SB=-1.788e+00 GT:AD:DP:GQ:PL 0/0:68,3:71:50:0,50,1365 0/1:59,7:66:56:56,0,1186 0/0:88,5:93:48:0,48,1538 0/1:17,2:20:22:22,0,299 +chr19 52579509 rs7359836 T C 64.01 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.358;DB;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=29.31;MQ0=0;MQRankSum=0.358;QD=16.00;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,44 1/1:1,3:4:9:100,9,0 ./. ./. +chr19 52580228 . C T 680.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.544;DP=202;Dels=0.00;FS=23.532;HaplotypeScore=1.3522;MLEAC=4;MLEAF=0.500;MQ=23.73;MQ0=0;MQRankSum=6.466;QD=3.37;ReadPosRankSum=2.085;SB=-1.096e-02 GT:AD:DP:GQ:PL 0/1:48,8:56:99:179,0,230 0/1:43,12:55:74:318,0,74 0/1:48,7:55:99:164,0,327 0/1:32,4:36:38:62,0,38 +chr19 52705250 . T G 215.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.768;DP=138;Dels=0.01;FS=112.920;HaplotypeScore=3.6990;MLEAC=3;MLEAF=0.375;MQ=32.63;MQ0=0;MQRankSum=-3.196;QD=2.03;ReadPosRankSum=0.262;SB=0.172 GT:AD:DP:GQ:PL 0/1:25,7:32:99:162,0,515 0/1:31,4:35:41:41,0,753 0/1:33,5:38:55:55,0,753 0/0:29,3:32:9:0,9,761 +chr19 52938205 rs11084159 T G 106.51 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.772;DB;DP=23;Dels=0.04;FS=15.128;HaplotypeScore=6.8820;MLEAC=4;MLEAF=1.00;MQ=14.91;MQ0=0;MQRankSum=2.431;QD=6.66;ReadPosRankSum=-0.993;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,7:10:12:115,12,0 ./. 1/1:4,1:5:3:26,3,0 ./. +chr19 52941618 rs1366258 A C 1669 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.676;DB;DP=135;Dels=0.00;FS=10.632;HaplotypeScore=0.5607;MLEAC=8;MLEAF=1.00;MQ=20.00;MQ0=0;MQRankSum=5.793;QD=12.36;ReadPosRankSum=0.648;SB=-7.796e+02 GT:AD:DP:GQ:PL 1/1:12,31:43:45:504,45,0 1/1:10,30:40:23:501,23,0 1/1:10,27:37:45:497,45,0 1/1:4,11:15:21:206,21,0 +chr19 52942244 . C T 193.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.498;DP=220;Dels=0.00;FS=128.381;HaplotypeScore=9.3583;MLEAC=4;MLEAF=0.500;MQ=16.56;MQ0=0;MQRankSum=-0.658;QD=0.88;ReadPosRankSum=3.401;SB=-2.718e+01 GT:AD:DP:GQ:PL 0/1:45,16:64:36:36,0,374 0/1:41,6:48:17:17,0,252 0/1:50,15:65:99:130,0,337 0/1:33,9:43:53:53,0,59 +chr19 53313419 rs1974830 G C 489.79 . AC=7;AF=0.875;AN=8;BaseQRankSum=-2.092;DB;DP=41;Dels=0.00;FS=2.657;HaplotypeScore=3.8643;MLEAC=7;MLEAF=0.875;MQ=21.14;MQ0=0;MQRankSum=-0.257;QD=11.95;ReadPosRankSum=0.000;SB=-2.799e+01 GT:AD:DP:GQ:PL 0/1:11,5:16:57:57,0,165 1/1:1,7:8:18:174,18,0 1/1:0,5:5:12:114,12,0 1/1:2,10:12:21:189,21,0 +chr19 53368649 . A G 32.15 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.260;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7577;MLEAC=2;MLEAF=0.250;MQ=13.87;MQ0=0;MQRankSum=2.815;QD=0.89;ReadPosRankSum=-2.344;SB=0.188 GT:AD:DP:GQ:PL 0/0:13,1:14:3:0,3,26 0/1:17,1:18:20:20,0,43 0/0:15,0:15:12:0,12,129 0/1:16,2:18:52:52,0,59 +chr19 53873875 . C T 53.03 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.896;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=16.95;MQ0=0;MQRankSum=1.896;QD=3.31;ReadPosRankSum=-1.896;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:9,1:10:3:28,3,0 0/0:6,0:6:3:0,3,26 1/1:4,2:6:6:64,6,0 +chr19 53875523 rs7253268 G A 32.71 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.665;DB;DP=106;Dels=0.01;FS=2.958;HaplotypeScore=5.1683;MLEAC=1;MLEAF=0.125;MQ=13.11;MQ0=0;MQRankSum=-0.273;QD=1.02;ReadPosRankSum=-0.658;SB=0.078 GT:AD:DP:GQ:PL 0/0:22,1:23:12:0,12,137 0/1:19,13:32:41:68,0,41 0/0:30,1:31:3:0,3,34 0/0:17,2:19:15:0,15,140 +chr19 53995004 rs2708845 G A 140.99 . AC=6;AF=1.00;AN=6;BaseQRankSum=4.950;DB;DP=230;Dels=0.01;FS=37.374;HaplotypeScore=13.9478;MLEAC=5;MLEAF=0.833;MQ=11.85;MQ0=0;MQRankSum=2.309;QD=0.70;ReadPosRankSum=3.461;SB=-4.124e+01 GT:AD:DP:GQ:PL 1/1:44,23:69:6:69,6,0 1/1:35,19:56:3:29,3,0 1/1:41,31:74:9:79,9,0 ./. +chr19 53995078 rs111582892 T G 43.26 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.136;DB;DP=99;Dels=0.02;FS=27.101;HaplotypeScore=2.8849;MLEAC=3;MLEAF=0.375;MQ=15.51;MQ0=0;MQRankSum=1.540;QD=0.58;ReadPosRankSum=-1.349;SB=-3.819e-01 GT:AD:DP:GQ:PL 0/0:22,1:23:12:0,12,135 0/1:28,1:29:24:24,0,90 0/1:32,2:35:45:45,0,75 0/1:9,1:10:17:17,0,29 +chr19 54194170 . G C 81.97 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.126;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=2.2266;MLEAC=4;MLEAF=0.500;MQ=14.29;MQ0=0;MQRankSum=1.799;QD=0.57;ReadPosRankSum=2.649;SB=-2.700e-01 GT:AD:DP:GQ:PL 0/1:31,5:36:51:51,0,66 0/1:39,4:43:20:22,0,20 0/1:41,1:42:10:10,0,95 0/1:20,2:22:41:41,0,90 +chr19 54216610 . G T 100.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.793;DP=216;Dels=0.00;FS=23.571;HaplotypeScore=0.4096;MLEAC=4;MLEAF=0.500;MQ=12.61;MQ0=0;MQRankSum=4.321;QD=0.47;ReadPosRankSum=-2.383;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:54,1:55:21:21,0,67 0/1:56,3:59:52:52,0,93 0/1:63,2:65:15:15,0,62 0/1:34,3:37:55:55,0,64 +chr19 54238193 . C G 49.78 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.333;DP=117;Dels=0.01;FS=9.827;HaplotypeScore=31.8963;MLEAC=3;MLEAF=0.375;MQ=16.63;MQ0=0;MQRankSum=1.450;QD=0.55;ReadPosRankSum=-0.165;SB=31.44 GT:AD:DP:GQ:PL 1/1:19,3:22:9:74,9,0 0/1:22,3:29:2:2,0,161 0/1:34,4:39:16:16,0,29 0/0:24,1:26:6:0,6,55 +chr19 54238208 rs74704964 C T 219.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.169;DB;DP=154;Dels=0.00;FS=4.672;HaplotypeScore=4.3775;MLEAC=1;MLEAF=0.125;MQ=16.49;MQ0=0;MQRankSum=3.304;QD=5.95;ReadPosRankSum=2.611;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/0:31,0:31:33:0,33,280 0/1:22,15:37:99:256,0,243 0/0:50,0:50:51:0,51,448 0/0:36,0:36:42:0,42,353 +chr19 54385720 . A T 171.28 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.419;DP=159;Dels=0.00;FS=128.083;HaplotypeScore=13.0368;MLEAC=4;MLEAF=0.500;MQ=30.13;MQ0=0;MQRankSum=-1.035;QD=1.08;ReadPosRankSum=-0.187;SB=-2.697e+00 GT:AD:DP:GQ:PL 0/1:30,6:36:97:97,0,757 0/1:38,4:43:4:4,0,895 0/1:37,3:40:4:4,0,843 0/1:32,7:40:99:106,0,621 +chr19 54545390 . A C 79.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.428;DP=186;Dels=0.01;FS=11.322;HaplotypeScore=31.1547;MLEAC=2;MLEAF=0.250;MQ=37.94;MQ0=0;MQRankSum=-3.994;QD=0.82;ReadPosRankSum=-3.010;SB=-9.611e-03 GT:AD:DP:GQ:PL 0/0:40,1:41:67:0,67,1233 0/0:45,3:48:28:0,28,1454 0/1:46,6:52:45:45,0,1473 0/1:39,5:44:76:76,0,1098 +chr19 54545531 rs2433724 T C 379.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.784;DB;DP=175;Dels=0.01;FS=1.179;HaplotypeScore=2.2730;MLEAC=1;MLEAF=0.125;MQ=36.34;MQ0=0;MQRankSum=-2.831;QD=10.56;ReadPosRankSum=1.133;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/0:45,0:46:99:0,132,1717 0/1:20,15:35:99:416,0,554 0/0:47,0:47:99:0,138,1819 0/0:46,0:46:99:0,132,1680 +chr19 54609349 . A T 352.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.372;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.2354;MLEAC=4;MLEAF=0.500;MQ=34.16;MQ0=0;MQRankSum=-3.184;QD=3.45;ReadPosRankSum=3.397;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,4:27:86:86,0,431 0/1:17,8:25:99:188,0,255 0/1:20,2:22:8:8,0,369 0/1:23,5:28:99:112,0,286 +chr19 54664752 rs36656 A C 809.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.053;DB;DP=106;Dels=0.00;FS=15.385;HaplotypeScore=0.2498;MLEAC=4;MLEAF=0.500;MQ=32.80;MQ0=0;MQRankSum=-3.287;QD=7.64;ReadPosRankSum=-0.554;SB=-1.870e+02 GT:AD:DP:GQ:PL 0/1:11,8:19:99:124,0,328 0/1:21,9:30:99:189,0,639 0/1:16,13:29:99:252,0,462 0/1:15,13:28:99:287,0,324 +chr19 54695720 . C T 975.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.165;DP=106;Dels=0.01;FS=10.234;HaplotypeScore=1.4709;MLEAC=3;MLEAF=0.375;MQ=37.11;MQ0=0;MQRankSum=0.140;QD=12.35;ReadPosRankSum=0.182;SB=-3.640e+02 GT:AD:DP:GQ:PL 0/1:15,9:24:99:283,0,467 0/0:27,0:27:69:0,69,915 0/1:16,15:31:99:511,0,483 0/1:14,9:23:99:225,0,380 +chr19 54734037 . T A 58.79 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.926;DP=90;Dels=0.00;FS=70.142;HaplotypeScore=0.8912;MLEAC=4;MLEAF=0.500;MQ=14.17;MQ0=0;MQRankSum=1.467;QD=0.65;ReadPosRankSum=1.068;SB=1.47 GT:AD:DP:GQ:PL 0/1:23,4:27:21:21,0,55 0/1:18,2:20:20:43,0,20 0/1:18,3:21:14:14,0,66 0/1:21,1:22:23:23,0,78 +chr19 54760993 . G A 38.12 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.904;DP=121;Dels=0.00;FS=2.228;HaplotypeScore=2.4917;MLEAC=2;MLEAF=0.250;MQ=30.30;MQ0=0;MQRankSum=1.770;QD=0.71;ReadPosRankSum=-2.042;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/0:29,0:30:54:0,54,634 0/1:21,3:24:14:14,0,450 0/0:37,0:37:84:0,84,964 0/1:26,4:30:65:65,0,611 +chr19 54809272 . C A 375.50 . AC=7;AF=0.875;AN=8;BaseQRankSum=-3.603;DP=95;Dels=0.02;FS=7.809;HaplotypeScore=2.4544;MLEAC=7;MLEAF=0.875;MQ=16.79;MQ0=0;MQRankSum=5.380;QD=3.95;ReadPosRankSum=2.793;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:16,1:17:3:30,3,0 1/1:18,5:24:12:119,12,0 1/1:22,7:29:15:148,15,0 0/1:15,7:23:15:121,0,15 +chr19 54845287 . C G 197.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.474;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7600;MLEAC=4;MLEAF=0.500;MQ=28.38;MQ0=0;MQRankSum=1.786;QD=2.22;ReadPosRankSum=1.859;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,3:25:71:71,0,219 0/1:22,3:25:59:59,0,238 0/1:16,5:21:99:104,0,288 0/1:16,2:18:5:5,0,338 +chr19 55178228 . C A 34.33 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.862;DP=57;Dels=0.02;FS=15.480;HaplotypeScore=3.7119;MLEAC=3;MLEAF=0.500;MQ=14.96;MQ0=0;MQRankSum=2.365;QD=1.11;ReadPosRankSum=0.918;SB=26.43 GT:AD:DP:GQ:PL ./. 0/0:15,0:15:9:0,9,80 1/1:16,2:18:6:56,6,0 0/1:12,1:13:19:19,0,53 +chr19 55286836 . G C 57.01 . AC=2;AF=0.500;AN=4;BaseQRankSum=-1.047;DP=101;Dels=0.00;FS=11.310;HaplotypeScore=5.0351;MLEAC=3;MLEAF=0.750;MQ=7.44;MQ0=0;MQRankSum=0.403;QD=1.08;ReadPosRankSum=3.218;SB=-2.725e+01 GT:AD:DP:GQ:PL 0/0:42,0:42:3:0,3,30 1/1:39,14:53:9:93,9,0 ./. ./. +chr19 55359404 rs143499771 T A 238.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.570;DB;DP=502;Dels=0.00;FS=5.152;HaplotypeScore=2.2248;MLEAC=1;MLEAF=0.125;MQ=29.06;MQ0=0;MQRankSum=0.135;QD=1.85;ReadPosRankSum=1.563;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:110,0:110:99:0,217,2752 0/1:103,25:129:99:275,0,2065 0/0:153,0:153:99:0,265,3327 0/0:110,0:110:99:0,199,2505 +chr19 55361970 . T G 30.40 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.727;DP=172;Dels=0.00;FS=40.633;HaplotypeScore=2.1710;MLEAC=2;MLEAF=0.250;MQ=12.22;MQ0=0;MQRankSum=0.167;QD=0.34;ReadPosRankSum=-0.403;SB=10.90 GT:AD:DP:GQ:PL 0/0:41,2:45:9:0,9,75 0/1:45,2:47:15:15,0,53 0/1:37,5:42:56:56,0,87 0/0:35,3:38:18:0,18,203 +chr19 55365320 rs1048270 G T 175.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=5.794;DB;DP=319;Dels=0.00;FS=6.852;HaplotypeScore=3.4419;MLEAC=3;MLEAF=0.375;MQ=10.89;MQ0=0;MQRankSum=-0.290;QD=0.73;ReadPosRankSum=-0.819;SB=-4.947e+01 GT:AD:DP:GQ:PL 0/0:77,0:77:18:0,18,168 0/1:51,26:79:28:99,0,28 0/1:48,40:88:47:47,0,108 0/1:45,29:74:73:73,0,135 +chr19 55378207 . A C 121.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.620;DP=232;Dels=0.00;FS=2.171;HaplotypeScore=4.1660;MLEAC=3;MLEAF=0.375;MQ=19.21;MQ0=0;MQRankSum=3.235;QD=0.71;ReadPosRankSum=-2.056;SB=1.04 GT:AD:DP:GQ:PL 0/1:55,5:60:45:45,0,264 0/1:48,6:54:65:65,0,296 0/0:59,1:60:5:0,5,263 0/1:51,5:57:53:53,0,329 +chr19 55445777 . C G 45.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.063;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=21.4291;MLEAC=1;MLEAF=0.125;MQ=31.62;MQ0=0;MQRankSum=-2.819;QD=1.67;ReadPosRankSum=-0.638;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,5:27:81:81,0,495 0/0:26,1:27:43:0,43,757 0/0:27,0:27:69:0,69,800 0/0:17,2:19:18:0,18,467 +chr19 55447501 rs7359934 G A 31.31 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.396;DB;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.2333;MLEAC=1;MLEAF=0.125;MQ=33.29;MQ0=0;MQRankSum=0.107;QD=6.26;ReadPosRankSum=1.826;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:66:66,0,96 0/0:4,0:4:6:0,6,86 0/0:2,0:2:3:0,3,31 0/0:3,0:3:6:0,6,83 +chr19 55525894 rs1671151 G A 4021.01 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.437;DB;DP=240;Dels=0.00;FS=12.407;HaplotypeScore=2.5376;MLEAC=5;MLEAF=0.625;MQ=34.48;MQ0=0;MQRankSum=-3.562;QD=16.75;ReadPosRankSum=2.351;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:5,49:54:99:1795,144,0 0/1:35,31:66:99:922,0,894 0/1:41,22:63:99:668,0,1223 0/1:32,23:56:99:636,0,932 +chr19 55710175 . C T 150.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.985;DP=119;Dels=0.00;FS=103.442;HaplotypeScore=8.5618;MLEAC=3;MLEAF=0.375;MQ=27.06;MQ0=0;MQRankSum=-2.754;QD=1.69;ReadPosRankSum=-1.216;SB=-1.729e+00 GT:AD:DP:GQ:PL 0/1:24,7:31:60:60,0,666 0/1:20,5:25:57:57,0,375 0/1:26,7:33:76:76,0,495 0/0:26,4:30:13:0,13,399 +chr19 55713420 . T C 32.31 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.688;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.5505;MLEAC=1;MLEAF=0.125;MQ=14.70;MQ0=0;MQRankSum=1.884;QD=2.31;ReadPosRankSum=-0.981;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:6:0,6,49 0/1:11,3:14:23:67,0,23 0/0:18,0:18:6:0,6,68 0/0:11,0:11:3:0,3,23 +chr19 55865214 . C G 61.36 . AC=5;AF=0.833;AN=6;BaseQRankSum=-2.072;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.5731;MLEAC=5;MLEAF=0.833;MQ=16.14;MQ0=0;MQRankSum=1.447;QD=5.11;ReadPosRankSum=0.741;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:20:20,0,20 1/1:1,1:2:3:28,3,0 1/1:1,4:5:6:52,6,0 ./. +chr19 55992887 . C A 89 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.562;DP=81;Dels=0.00;FS=24.066;HaplotypeScore=0.4988;MLEAC=2;MLEAF=0.250;MQ=30.72;MQ0=0;MQRankSum=-1.327;QD=2.17;ReadPosRankSum=2.109;SB=-3.537e-01 GT:AD:DP:GQ:PL 0/1:14,4:18:95:95,0,290 0/0:21,1:22:15:0,15,497 0/1:20,3:23:35:35,0,462 0/0:16,2:18:9:0,9,414 +chr19 56009191 rs34794462 GT G 660.44 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.750;DB;DP=44;FS=0.000;HaplotypeScore=24.8226;MLEAC=6;MLEAF=0.750;MQ=24.60;MQ0=0;MQRankSum=-1.654;QD=15.01;ReadPosRankSum=-0.264;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:6,4:8:99:156,0,158 0/1:8,6:11:99:152,0,241 1/1:4,6:6:18:271,18,0 1/1:1,4:4:9:136,9,0 +chr19 56047448 rs310453 A G 421.64 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.093;DB;DP=23;Dels=0.04;FS=2.869;HaplotypeScore=2.7094;MLEAC=8;MLEAF=1.00;MQ=28.94;MQ0=0;MQRankSum=2.526;QD=18.33;ReadPosRankSum=-0.938;SB=-1.471e+02 GT:AD:DP:GQ:PL 1/1:0,3:3:9:118,9,0 1/1:2,3:5:9:124,9,0 1/1:6,3:9:9:107,9,0 1/1:2,3:5:9:111,9,0 +chr19 56180307 rs630491 C G,T 338.84 . AC=1,5;AF=0.167,0.833;AN=6;BaseQRankSum=0.651;DB;DP=25;Dels=0.04;FS=21.461;HaplotypeScore=4.0659;MLEAC=1,5;MLEAF=0.167,0.833;MQ=23.25;MQ0=0;MQRankSum=1.519;QD=17.83;ReadPosRankSum=-0.868;SB=-1.182e-02 GT:AD:DP:GQ:PL 2/2:0,0,6:6:18:183,183,183,18,18,0 1/2:0,4,2:6:38:146,47,38,99,0,93 2/2:3,0,3:6:9:81,81,81,9,9,0 ./. +chr19 56185369 . G A 93.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.474;DP=143;Dels=0.01;FS=13.987;HaplotypeScore=16.3030;MLEAC=3;MLEAF=0.375;MQ=30.72;MQ0=0;MQRankSum=-2.489;QD=0.94;ReadPosRankSum=-2.080;SB=-1.096e-03 GT:AD:DP:GQ:PL 0/0:41,2:43:31:0,31,953 0/1:33,5:38:58:58,0,784 0/1:29,5:34:42:42,0,746 0/1:24,3:27:37:37,0,478 +chr19 56204453 . C A 221.31 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.388;DP=93;Dels=0.01;FS=4.874;HaplotypeScore=4.1833;MLEAC=3;MLEAF=0.375;MQ=30.39;MQ0=0;MQRankSum=-1.073;QD=2.99;ReadPosRankSum=2.165;SB=-1.051e+00 GT:AD:DP:GQ:PL 0/0:18,1:19:17:0,17,478 0/1:18,4:22:3:3,0,264 0/1:21,8:29:99:197,0,440 0/1:17,5:22:62:62,0,302 +chr19 56421826 rs12982016 C T 108.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.867;DB;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.4991;MLEAC=1;MLEAF=0.125;MQ=38.45;MQ0=0;MQRankSum=-1.254;QD=7.79;ReadPosRankSum=-0.365;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:26,0:26:75:0,75,1016 0/1:9,5:14:99:145,0,331 0/0:18,0:18:51:0,51,630 0/0:14,0:14:39:0,39,517 +chr19 56423893 rs303998 G A 623.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.567;DB;DP=279;Dels=0.00;FS=5.448;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.125;MQ=40.47;MQ0=0;MQRankSum=-3.911;QD=8.79;ReadPosRankSum=1.502;SB=-1.950e+02 GT:AD:DP:GQ:PL 0/0:69,0:69:99:0,205,2798 0/1:48,23:71:99:660,0,1780 0/0:87,1:88:99:0,216,3430 0/0:51,0:51:99:0,147,2012 +chr19 56511233 rs12462663 C T 278.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.592;DB;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.4003;MLEAC=1;MLEAF=0.125;MQ=36.38;MQ0=0;MQRankSum=-0.377;QD=7.75;ReadPosRankSum=-0.403;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:25,11:36:99:315,0,457 0/0:35,0:35:69:0,69,842 0/0:45,0:45:99:0,114,1415 0/0:43,0:43:93:0,93,1124 +chr19 56572875 rs36118060 G A 1077.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.808;DB;DP=386;Dels=0.01;FS=42.931;HaplotypeScore=8.6445;MLEAC=3;MLEAF=0.375;MQ=38.32;MQ0=0;MQRankSum=-5.426;QD=4.01;ReadPosRankSum=0.194;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:78,17:95:99:269,0,2672 0/0:117,0:117:99:0,346,4584 0/1:66,21:87:99:472,0,2297 0/1:66,16:82:99:380,0,2156 +chr19 56717194 rs28712522 C T 335.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.121;DB;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.2080;MLEAC=3;MLEAF=0.375;MQ=29.18;MQ0=0;MQRankSum=0.929;QD=6.46;ReadPosRankSum=1.276;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,4:19:93:93,0,312 0/0:22,0:22:48:0,48,599 0/1:12,4:16:99:120,0,151 0/1:10,7:17:99:166,0,152 +chr19 56756574 . C CT 175.90 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.048;DP=73;FS=0.000;HaplotypeScore=1.1733;MLEAC=3;MLEAF=0.375;MQ=13.58;MQ0=0;MQRankSum=1.876;QD=3.20;RPA=6,7;RU=T;ReadPosRankSum=0.722;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/0:18,0:2:6:0,6,70 0/1:11,7:4:23:90,0,23 0/1:16,5:7:81:81,0,111 0/1:13,3:4:56:56,0,58 +chr19 56901620 rs2288860 C A 1886.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.221;DB;DP=108;Dels=0.01;FS=4.629;HaplotypeScore=2.3891;MLEAC=6;MLEAF=0.750;MQ=32.86;MQ0=0;MQRankSum=-1.953;QD=17.47;ReadPosRankSum=-0.730;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,12:37:99:341,0,546 0/1:14,13:27:99:384,0,282 1/1:5,22:27:66:849,66,0 1/1:3,12:16:30:359,30,0 +chr19 57175156 . C A 187.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.730;DP=255;Dels=0.00;FS=32.734;HaplotypeScore=17.3632;MLEAC=3;MLEAF=0.375;MQ=31.67;MQ0=0;MQRankSum=-2.397;QD=0.98;ReadPosRankSum=0.933;SB=-5.979e-01 GT:AD:DP:GQ:PL 0/1:57,11:68:99:160,0,1200 0/0:61,2:63:60:0,60,1370 0/1:55,4:59:10:10,0,1151 0/1:54,11:65:60:60,0,1014 +chr19 57175380 . C G 89.96 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.052;DP=42;Dels=0.00;FS=4.202;HaplotypeScore=2.6665;MLEAC=4;MLEAF=0.500;MQ=21.63;MQ0=0;MQRankSum=1.918;QD=2.14;ReadPosRankSum=-2.454;SB=-2.626e+01 GT:AD:DP:GQ:PL 0/1:6,2:8:51:51,0,52 0/1:8,1:9:18:24,0,18 0/1:13,2:15:11:11,0,142 0/1:8,2:10:16:46,0,16 +chr19 57909872 rs4801478 G A 7965.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.977;DB;DP=230;Dels=0.01;FS=0.000;HaplotypeScore=8.0946;MLEAC=8;MLEAF=1.00;MQ=38.20;MQ0=0;MQRankSum=1.907;QD=34.63;ReadPosRankSum=3.538;SB=-3.432e+03 GT:AD:DP:GQ:PL 1/1:5,54:59:99:2077,135,0 1/1:8,56:64:99:2156,147,0 1/1:2,50:52:99:1977,121,0 1/1:3,49:52:99:1755,117,0 +chr19 57931303 rs2014827 C A 1472.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.433;DB;DP=248;Dels=0.00;FS=2.669;HaplotypeScore=4.6400;MLEAC=3;MLEAF=0.375;MQ=30.54;MQ0=0;MQRankSum=-2.752;QD=8.14;ReadPosRankSum=2.053;SB=-4.370e+02 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,186,2147 0/1:37,28:65:99:739,0,920 0/1:45,19:64:99:358,0,1097 0/1:32,19:51:99:419,0,751 +chr19 57986502 . A C 464.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.184;DP=223;Dels=0.00;FS=53.897;HaplotypeScore=2.7434;MLEAC=4;MLEAF=0.500;MQ=40.56;MQ0=0;MQRankSum=-3.153;QD=2.08;ReadPosRankSum=0.986;SB=-8.344e-02 GT:AD:DP:GQ:PL 0/1:50,6:56:68:68,0,1159 0/1:53,8:61:99:132,0,1275 0/1:55,4:59:17:17,0,1249 0/1:35,11:47:99:290,0,755 +chr19 58003728 rs2074073 G A 852.11 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.413;DB;DP=261;Dels=0.00;FS=2.405;HaplotypeScore=2.4276;MLEAC=8;MLEAF=1.00;MQ=12.65;MQ0=0;MQRankSum=2.834;QD=3.26;ReadPosRankSum=2.807;SB=-3.964e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:15:167,15,0 1/1:2,75:78:27:331,27,0 1/1:3,64:67:21:253,21,0 1/1:3,51:54:12:140,12,0 +chr19 58018848 rs2066936 A G 131.85 . AC=6;AF=1.00;AN=6;BaseQRankSum=3.332;DB;DP=22;Dels=0.00;FS=8.316;HaplotypeScore=0.9175;MLEAC=6;MLEAF=1.00;MQ=14.36;MQ0=0;MQRankSum=2.977;QD=6.94;ReadPosRankSum=2.177;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,5:8:9:74,9,0 1/1:5,3:8:6:62,6,0 1/1:1,2:3:3:32,3,0 ./. +chr19 58042487 . G C 42.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.289;DP=193;Dels=0.00;FS=126.238;HaplotypeScore=2.6585;MLEAC=1;MLEAF=0.125;MQ=35.18;MQ0=0;MQRankSum=-4.791;QD=1.10;ReadPosRankSum=-0.162;SB=-6.421e+00 GT:AD:DP:GQ:PL 0/0:44,3:47:63:0,63,1407 0/0:51,2:53:82:0,82,1721 0/0:51,3:54:31:0,31,1526 0/1:32,7:39:79:79,0,872 +chr19 58067663 . G A 58.11 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.640;DP=216;Dels=0.00;FS=54.033;HaplotypeScore=2.3217;MLEAC=1;MLEAF=0.125;MQ=24.51;MQ0=0;MQRankSum=0.687;QD=1.12;ReadPosRankSum=1.511;SB=-4.213e+00 GT:AD:DP:GQ:PL 0/1:46,6:52:94:94,0,395 0/0:48,2:50:10:0,10,696 0/0:56,2:59:75:0,75,799 0/0:54,0:55:63:0,63,687 +chr19 58084930 rs3746222 G A 412.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.482;DB;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.2163;MLEAC=1;MLEAF=0.125;MQ=36.27;MQ0=0;MQRankSum=-2.041;QD=9.18;ReadPosRankSum=0.355;SB=-1.890e+02 GT:AD:DP:GQ:PL 0/0:37,1:38:61:0,61,1243 0/1:27,18:45:99:449,0,826 0/0:48,0:48:99:0,129,1638 0/0:20,0:20:60:0,60,775 +chr19 58152004 . A G 138.41 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.237;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7110;MLEAC=4;MLEAF=0.500;MQ=31.84;MQ0=0;MQRankSum=-2.992;QD=2.39;ReadPosRankSum=2.018;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,4:18:89:89,0,193 0/1:10,2:12:6:6,0,186 0/1:16,3:19:48:48,0,283 0/1:7,2:9:37:37,0,86 +chr19 58187727 . T C 38.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.410;DP=122;Dels=0.00;FS=34.236;HaplotypeScore=6.5391;MLEAC=2;MLEAF=0.250;MQ=35.72;MQ0=0;MQRankSum=-0.110;QD=0.51;ReadPosRankSum=2.917;SB=1.66 GT:AD:DP:GQ:PL 0/0:36,2:38:5:0,5,797 0/1:30,4:34:58:58,0,689 0/1:37,4:41:21:21,0,767 0/0:9,0:9:15:0,15,183 +chr19 58193547 . G C 50.71 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.754;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.3333;MLEAC=3;MLEAF=0.500;MQ=30.97;MQ0=0;MQRankSum=-0.550;QD=5.63;ReadPosRankSum=-1.754;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:3,2:5:6:59,6,0 0/0:1,0:1:3:0,3,38 0/1:3,1:4:24:31,0,24 +chr19 58258466 rs60751243 G T 93.78 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.482;DB;DP=17;Dels=0.00;FS=8.383;HaplotypeScore=0.9073;MLEAC=4;MLEAF=0.500;MQ=21.37;MQ0=0;MQRankSum=1.164;QD=7.21;ReadPosRankSum=-0.212;SB=1.14 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,59 1/1:1,3:4:9:88,9,0 0/1:4,2:6:19:19,0,60 0/1:1,2:3:16:32,0,16 +chr19 58291228 rs2158013 A G 1129.74 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.051;DB;DP=92;Dels=0.01;FS=2.885;HaplotypeScore=0.6086;MLEAC=4;MLEAF=0.500;MQ=35.34;MQ0=0;MQRankSum=0.614;QD=15.91;ReadPosRankSum=1.207;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,0:21:39:0,39,540 1/1:1,17:18:19:613,19,0 0/1:18,11:29:99:340,0,456 0/1:15,8:23:99:225,0,504 +chr19 58421336 . C G 37.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.259;DP=53;Dels=0.00;FS=8.228;HaplotypeScore=1.9171;MLEAC=3;MLEAF=0.375;MQ=18.80;MQ0=0;MQRankSum=2.363;QD=0.89;ReadPosRankSum=0.569;SB=-1.114e+00 GT:AD:DP:GQ:PL 0/1:8,2:10:31:31,0,104 0/0:11,0:11:12:0,12,112 0/1:17,2:19:45:45,0,61 0/1:12,1:13:1:1,0,179 +chr19 58472703 . C A 187.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.444;DP=37;Dels=0.03;FS=3.222;HaplotypeScore=1.5719;MLEAC=4;MLEAF=0.500;MQ=26.81;MQ0=0;MQRankSum=-0.528;QD=5.07;ReadPosRankSum=3.063;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:25:25,0,46 0/1:6,2:8:49:49,0,86 0/1:9,4:13:59:86,0,59 0/1:4,3:7:23:70,0,23 +chr19 58806083 rs260471 T C 1536.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.153;DB;DP=150;Dels=0.00;FS=2.143;HaplotypeScore=1.9798;MLEAC=4;MLEAF=0.500;MQ=31.10;MQ0=0;MQRankSum=-1.397;QD=14.92;ReadPosRankSum=0.472;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:2,29:31:84:950,84,0 0/0:47,0:47:99:0,126,1499 0/1:26,10:36:99:252,0,706 0/1:21,15:36:99:383,0,531 +chr19 58946056 rs1465789 G A 3781.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.168;DB;DP=153;Dels=0.01;FS=2.604;HaplotypeScore=1.4662;MLEAC=7;MLEAF=0.875;MQ=32.26;MQ0=0;MQRankSum=-2.881;QD=24.71;ReadPosRankSum=0.364;SB=-1.853e+03 GT:AD:DP:GQ:PL 0/1:24,16:40:99:466,0,821 1/1:4,34:38:59:1101,59,0 1/1:5,39:44:79:1382,79,0 1/1:4,26:30:72:832,72,0 +chr19 59010996 . G C 79.42 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.841;DP=113;Dels=0.01;FS=38.431;HaplotypeScore=27.3643;MLEAC=2;MLEAF=0.250;MQ=25.21;MQ0=0;MQRankSum=-0.804;QD=1.28;ReadPosRankSum=0.174;SB=-3.736e+00 GT:AD:DP:GQ:PL 0/0:20,2:22:2:0,2,329 0/1:23,9:32:99:103,0,353 0/0:27,2:29:5:0,5,373 0/1:26,3:29:15:15,0,406 +chr19 59011044 rs143922406 C A 422.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.917;DB;DP=108;Dels=0.00;FS=7.967;HaplotypeScore=10.5219;MLEAC=4;MLEAF=0.500;MQ=27.97;MQ0=0;MQRankSum=-0.882;QD=3.91;ReadPosRankSum=3.157;SB=-7.901e-02 GT:AD:DP:GQ:PL 0/1:9,9:19:99:252,0,122 0/1:23,6:29:99:113,0,238 0/1:31,2:34:16:16,0,400 0/1:22,4:26:84:84,0,238 +chr19 59012840 . T G 143.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.798;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.2298;MLEAC=3;MLEAF=0.375;MQ=36.91;MQ0=0;MQRankSum=-4.130;QD=2.88;ReadPosRankSum=-0.739;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:36:0,36,461 0/1:16,5:21:40:40,0,421 0/1:11,3:14:71:71,0,240 0/1:11,4:15:76:76,0,339 +chr19 59060594 . T C 47.86 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.549;DP=189;Dels=0.00;FS=158.780;HaplotypeScore=17.1555;MLEAC=3;MLEAF=0.375;MQ=36.25;MQ0=0;MQRankSum=-4.326;QD=0.35;ReadPosRankSum=1.785;SB=-4.924e+00 GT:AD:DP:GQ:PL 0/1:38,5:43:10:10,0,1141 0/1:49,4:53:2:2,0,1180 0/0:47,4:52:12:0,12,1409 0/1:35,6:41:75:75,0,1006 +chr19 59061776 . G A 62.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.206;DP=130;Dels=0.00;FS=39.404;HaplotypeScore=2.9747;MLEAC=3;MLEAF=0.375;MQ=34.43;MQ0=0;MQRankSum=-3.467;QD=0.68;ReadPosRankSum=-2.725;SB=2.88 GT:AD:DP:GQ:PL 0/1:29,3:32:18:18,0,803 0/1:22,4:26:50:50,0,577 0/0:36,2:38:56:0,56,1144 0/1:30,4:34:38:38,0,687 +chr19 59082747 . C G 37.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.491;DP=60;Dels=0.00;FS=5.152;HaplotypeScore=3.9628;MLEAC=3;MLEAF=0.375;MQ=26.71;MQ0=0;MQRankSum=1.600;QD=0.79;ReadPosRankSum=-2.423;SB=-2.859e-01 GT:AD:DP:GQ:PL 0/1:14,1:15:11:11,0,207 0/1:16,2:18:40:40,0,134 0/0:13,0:13:30:0,30,312 0/1:12,2:14:29:29,0,204 +chr20 334010 . C G 38.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.813;DP=57;Dels=0.00;FS=19.526;HaplotypeScore=3.2728;MLEAC=2;MLEAF=0.250;MQ=28.19;MQ0=0;MQRankSum=1.189;QD=1.48;ReadPosRankSum=0.526;SB=-4.935e+00 GT:AD:DP:GQ:PL 0/0:14,0:14:30:0,30,326 0/1:10,2:12:42:42,0,143 0/1:12,2:14:38:38,0,201 0/0:17,0:17:27:0,27,293 +chr20 334116 . T C 221.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.076;DP=73;Dels=0.00;FS=10.094;HaplotypeScore=13.3167;MLEAC=4;MLEAF=0.500;MQ=20.46;MQ0=0;MQRankSum=3.264;QD=3.04;ReadPosRankSum=-4.142;SB=0.033 GT:AD:DP:GQ:PL 0/1:14,3:18:64:64,0,105 0/1:18,5:23:99:111,0,126 0/1:16,4:20:65:65,0,125 0/1:11,1:12:24:24,0,45 +chr20 1290968 rs113382304 C A 277.94 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.366;DB;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.2447;MLEAC=4;MLEAF=0.500;MQ=24.58;MQ0=0;MQRankSum=0.161;QD=9.58;ReadPosRankSum=0.666;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:43:43,0,123 0/0:7,1:8:15:0,15,140 0/1:1,3:4:29:76,0,29 1/1:6,8:14:21:207,21,0 +chr20 1293247 rs2273959 C T 471.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.781;DB;DP=132;Dels=0.00;FS=8.943;HaplotypeScore=0.4972;MLEAC=3;MLEAF=0.375;MQ=35.63;MQ0=0;MQRankSum=-0.301;QD=5.07;ReadPosRankSum=1.587;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,108,1409 0/1:24,6:30:99:141,0,590 0/1:24,6:31:99:150,0,702 0/1:24,8:32:99:224,0,658 +chr20 1549051 . G T 41.92 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.203;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.4981;MLEAC=2;MLEAF=0.250;MQ=28.49;MQ0=0;MQRankSum=0.248;QD=13.97;ReadPosRankSum=0.573;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,39 0/0:2,0:2:6:0,6,59 1/1:0,3:3:9:83,9,0 0/0:3,0:3:6:0,6,65 +chr20 1592399 . G A 30.77 . AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=14.20;MQ0=0;QD=10.26;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,3:3:6:62,6,0 ./. ./. +chr20 1688836 rs7266946 A G 48.67 . AC=3;AF=0.500;AN=6;BaseQRankSum=2.959;DB;DP=46;Dels=0.02;FS=7.839;HaplotypeScore=1.3339;MLEAC=3;MLEAF=0.500;MQ=13.31;MQ0=0;MQRankSum=1.686;QD=2.86;ReadPosRankSum=-0.986;SB=6.965e-03 GT:AD:DP:GQ:PL 1/1:4,3:7:6:63,6,0 0/1:7,2:9:26:26,0,37 ./. 0/0:12,1:13:6:0,6,67 +chr20 1738519 rs11087188 A AG 282.07 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.751;DB;DP=11;FS=0.000;HaplotypeScore=0.2452;MLEAC=7;MLEAF=0.875;MQ=36.40;MQ0=0;MQRankSum=0.751;QD=25.64;RPA=1,2;RU=G;ReadPosRankSum=0.751;SB=-4.035e+01;STR GT:AD:DP:GQ:PL 1/1:0,1:1:3:42,3,0 1/1:1,2:2:6:85,6,0 1/1:1,4:5:12:170,12,0 0/1:1,1:2:16:36,0,16 +chr20 1895686 . G C 108.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.081;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=4.5832;MLEAC=3;MLEAF=0.375;MQ=23.09;MQ0=0;MQRankSum=1.339;QD=2.04;ReadPosRankSum=-1.918;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:53:53,0,105 0/1:15,3:18:61:61,0,91 0/0:23,1:24:5:0,5,309 0/1:18,2:20:36:36,0,105 +chr20 2298173 . T G 200.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.424;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=12.7892;MLEAC=4;MLEAF=0.500;MQ=35.11;MQ0=0;MQRankSum=-5.584;QD=0.94;ReadPosRankSum=-2.335;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:45,6:51:19:19,0,1335 0/1:45,5:50:29:29,0,1176 0/1:57,6:63:36:36,0,1331 0/1:40,10:50:99:159,0,1007 +chr20 2378472 . A T 88.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.724;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.3920;MLEAC=2;MLEAF=0.250;MQ=22.55;MQ0=0;MQRankSum=-0.317;QD=4.66;ReadPosRankSum=2.534;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,4:9:67:67,0,89 0/0:8,2:10:6:0,6,64 0/1:7,3:10:61:61,0,146 0/0:6,0:6:3:0,3,32 +chr20 2474548 . A T 146.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.133;DP=151;Dels=0.00;FS=19.103;HaplotypeScore=19.5717;MLEAC=3;MLEAF=0.375;MQ=30.74;MQ0=0;MQRankSum=-3.073;QD=1.27;ReadPosRankSum=1.296;SB=2.11 GT:AD:DP:GQ:PL 0/0:34,2:36:10:0,10,713 0/1:32,8:40:80:80,0,646 0/1:40,4:44:27:27,0,709 0/1:26,5:31:82:82,0,319 +chr20 2597978 rs4815428 G A 916.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.402;DB;DP=62;Dels=0.02;FS=5.207;HaplotypeScore=3.8793;MLEAC=4;MLEAF=0.500;MQ=29.12;MQ0=0;MQRankSum=1.146;QD=14.79;ReadPosRankSum=0.911;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:7,9:16:99:296,0,108 0/1:4,6:10:9:176,0,9 0/1:10,7:17:99:197,0,223 0/1:7,11:18:89:290,0,89 +chr20 2840431 . T G 398.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-6.889;DP=205;Dels=0.01;FS=18.964;HaplotypeScore=13.3778;MLEAC=4;MLEAF=0.500;MQ=31.26;MQ0=0;MQRankSum=-5.972;QD=1.94;ReadPosRankSum=2.620;SB=-1.196e-02 GT:AD:DP:GQ:PL 0/1:39,9:48:99:147,0,885 0/1:38,11:49:58:58,0,784 0/1:49,7:57:44:44,0,1143 0/1:38,11:49:99:192,0,694 +chr20 2841866 . T G 279.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.353;DP=199;Dels=0.01;FS=75.668;HaplotypeScore=19.7482;MLEAC=3;MLEAF=0.375;MQ=28.69;MQ0=0;MQRankSum=-3.281;QD=1.85;ReadPosRankSum=0.484;SB=-3.356e-01 GT:AD:DP:GQ:PL 0/1:42,7:49:99:110,0,489 0/0:43,3:47:6:0,6,548 0/1:44,8:54:99:117,0,503 0/1:37,10:48:95:95,0,563 +chr20 3275377 rs2281506 G C 57.94 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.117;DB;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=32.05;MQ0=0;MQRankSum=0.953;QD=5.79;ReadPosRankSum=-1.588;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:12:0,12,154 0/1:5,1:6:28:28,0,98 0/1:2,2:4:66:71,0,66 0/0:5,0:5:12:0,12,153 +chr20 3530061 . A C 84.50 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.335;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.3889;MLEAC=3;MLEAF=0.375;MQ=27.61;MQ0=0;MQRankSum=0.810;QD=1.84;ReadPosRankSum=1.116;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:9:0,9,79 0/1:15,3:18:67:67,0,95 0/1:17,1:18:18:18,0,120 0/1:7,2:10:42:42,0,91 +chr20 3674911 . G C 84.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.118;DP=59;Dels=0.00;FS=25.006;HaplotypeScore=4.4592;MLEAC=3;MLEAF=0.375;MQ=25.29;MQ0=0;MQRankSum=-2.170;QD=1.85;ReadPosRankSum=0.091;SB=0.479 GT:AD:DP:GQ:PL 0/1:14,2:16:19:19,0,264 0/1:10,5:15:56:56,0,193 0/0:13,0:13:21:0,21,218 0/1:11,3:15:53:53,0,159 +chr20 3682210 . A T 174.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.185;DP=97;Dels=0.01;FS=17.279;HaplotypeScore=6.0748;MLEAC=3;MLEAF=0.375;MQ=29.12;MQ0=0;MQRankSum=-0.847;QD=2.21;ReadPosRankSum=-1.389;SB=0.885 GT:AD:DP:GQ:PL 0/1:15,4:19:69:69,0,398 0/1:27,3:30:32:32,0,462 0/1:24,6:30:99:116,0,575 0/0:15,2:17:6:0,6,258 +chr20 3726081 . C A 38.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.591;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=1.2334;MLEAC=2;MLEAF=0.250;MQ=33.68;MQ0=0;MQRankSum=-1.955;QD=0.86;ReadPosRankSum=0.684;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,2:22:21:21,0,378 0/1:19,4:23:59:59,0,477 0/0:29,0:29:57:0,57,682 0/0:29,0:29:60:0,60,720 +chr20 3785589 . G T 118.45 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.680;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8251;MLEAC=4;MLEAF=0.500;MQ=27.47;MQ0=0;MQRankSum=-2.944;QD=1.29;ReadPosRankSum=3.429;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,5:21:60:60,0,222 0/1:17,4:21:13:13,0,357 0/1:21,5:26:80:80,0,201 0/1:21,3:24:7:7,0,366 +chr20 3845002 . G GAC 289.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.421;DP=121;FS=27.267;HaplotypeScore=62.3758;MLEAC=4;MLEAF=0.500;MQ=22.94;MQ0=0;MQRankSum=-1.477;QD=2.39;RPA=1,2;RU=AC;ReadPosRankSum=-2.928;SB=0.969;STR GT:AD:DP:GQ:PL 0/1:17,7:16:96:96,0,336 0/1:22,5:15:59:59,0,401 0/1:19,7:18:99:148,0,473 0/1:28,6:20:38:38,0,645 +chr20 4770315 . G C 120.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.043;DP=106;Dels=0.00;FS=66.658;HaplotypeScore=1.2434;MLEAC=3;MLEAF=0.375;MQ=39.64;MQ0=0;MQRankSum=-1.746;QD=1.49;ReadPosRankSum=-1.894;SB=0.890 GT:AD:DP:GQ:PL 0/0:24,1:25:36:0,36,763 0/1:20,3:23:49:49,0,583 0/1:32,3:35:32:32,0,935 0/1:19,4:23:83:83,0,642 +chr20 4781621 . G C 45.95 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.075;DP=86;Dels=0.01;FS=2.394;HaplotypeScore=1.2978;MLEAC=2;MLEAF=0.250;MQ=37.29;MQ0=0;MQRankSum=-2.436;QD=1.12;ReadPosRankSum=2.953;SB=-3.945e+00 GT:AD:DP:GQ:PL 0/1:24,4:28:80:80,0,360 0/0:23,0:24:33:0,33,415 0/0:20,0:20:39:0,39,499 0/1:12,1:13:3:3,0,238 +chr20 5530109 . A C 41.31 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.753;DP=98;Dels=0.00;FS=41.992;HaplotypeScore=0.3305;MLEAC=3;MLEAF=0.500;MQ=14.45;MQ0=0;MQRankSum=2.533;QD=0.47;ReadPosRankSum=-1.999;SB=-3.649e-02 GT:AD:DP:GQ:PL 0/1:26,1:27:24:24,0,97 0/1:26,2:28:34:34,0,130 0/1:32,1:33:22:22,0,98 ./. +chr20 5927218 rs236181 C G 738.87 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.663;DB;DP=53;Dels=0.00;FS=4.130;HaplotypeScore=2.6360;MLEAC=4;MLEAF=0.500;MQ=28.94;MQ0=0;MQRankSum=-1.856;QD=18.02;ReadPosRankSum=2.145;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,11:13:33:372,33,0 0/0:12,0:12:24:0,24,297 0/1:8,9:18:99:238,0,158 0/1:3,7:10:9:177,0,9 +chr20 5935385 rs236114 T C 1104.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.000;DB;DP=68;Dels=0.01;FS=3.010;HaplotypeScore=1.1229;MLEAC=5;MLEAF=0.625;MQ=38.26;MQ0=0;MQRankSum=-2.552;QD=16.24;ReadPosRankSum=-0.398;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,18:19:54:694,54,0 0/1:13,6:19:99:187,0,457 0/1:15,8:23:99:239,0,532 0/1:5,1:6:30:30,0,117 +chr20 6012680 . A T 764.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.950;DP=197;Dels=0.00;FS=166.607;HaplotypeScore=5.6352;MLEAC=4;MLEAF=0.500;MQ=36.67;MQ0=0;MQRankSum=2.179;QD=3.88;ReadPosRankSum=-0.031;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:47,9:56:99:187,0,1258 0/1:51,12:63:99:233,0,1505 0/1:49,10:59:99:257,0,1288 0/1:14,5:19:99:130,0,249 +chr20 6031335 . A G 134.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.777;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3828;MLEAC=3;MLEAF=0.375;MQ=34.52;MQ0=0;MQRankSum=-1.307;QD=2.14;ReadPosRankSum=3.282;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,4:26:75:75,0,338 0/1:17,4:21:64:64,0,301 0/0:33,0:33:51:0,51,593 0/1:14,2:16:39:39,0,151 +chr20 8639381 . G A 40.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.984;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8168;MLEAC=2;MLEAF=0.250;MQ=29.53;MQ0=0;MQRankSum=-2.391;QD=1.16;ReadPosRankSum=-0.969;SB=0.033 GT:AD:DP:GQ:PL 0/1:21,3:24:36:36,0,499 0/0:28,2:30:18:0,18,683 0/0:22,0:22:48:0,48,543 0/1:8,3:11:39:46,0,39 +chr20 8665686 . C A 243.04 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.415;DP=205;Dels=0.00;FS=120.740;HaplotypeScore=7.0754;MLEAC=3;MLEAF=0.375;MQ=35.36;MQ0=0;MQRankSum=-4.180;QD=1.66;ReadPosRankSum=2.214;SB=-2.585e-01 GT:AD:DP:GQ:PL 0/1:47,11:58:99:178,0,1285 0/1:54,9:63:94:94,0,1361 0/0:57,1:58:99:0,135,1630 0/1:21,4:25:14:14,0,581 +chr20 8703145 rs6086563 C G 473.61 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.936;DB;DP=70;Dels=0.01;FS=3.093;HaplotypeScore=5.6894;MLEAC=5;MLEAF=0.625;MQ=26.84;MQ0=0;MQRankSum=1.230;QD=6.77;ReadPosRankSum=2.228;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:10,8:18:24:249,24,0 0/1:17,4:22:93:93,0,137 0/1:14,6:20:99:114,0,133 0/1:7,2:9:63:63,0,73 +chr20 8741188 rs2294596 A G 219.90 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.647;DB;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4468;MLEAC=2;MLEAF=0.250;MQ=31.04;MQ0=0;MQRankSum=0.703;QD=5.11;ReadPosRankSum=-1.374;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:48:0,48,527 0/1:18,4:22:96:96,0,253 0/1:15,6:21:99:165,0,143 0/0:6,0:6:9:0,9,110 +chr20 10603165 rs74619291 T A 143.18 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.217;DB;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=3.1976;MLEAC=1;MLEAF=0.125;MQ=27.18;MQ0=0;MQRankSum=-0.484;QD=15.91;ReadPosRankSum=0.025;SB=18.89 GT:AD:DP:GQ:PL 0/0:8,0:8:24:0,24,278 0/1:2,7:9:18:179,0,18 0/0:7,0:9:15:0,15,183 0/0:7,0:7:15:0,15,152 +chr20 10603750 rs6077853 G A 1812.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.421;DB;DP=217;Dels=0.00;FS=7.505;HaplotypeScore=3.4712;MLEAC=3;MLEAF=0.375;MQ=37.46;MQ0=0;MQRankSum=-2.439;QD=11.47;ReadPosRankSum=1.852;SB=-2.520e+02 GT:AD:DP:GQ:PL 0/1:35,24:59:99:748,0,992 0/0:59,0:59:99:0,150,2053 0/1:31,25:56:99:662,0,988 0/1:27,15:42:99:446,0,815 +chr20 10620067 . C A 72.12 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.752;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=1.9541;MLEAC=2;MLEAF=0.250;MQ=36.87;MQ0=0;MQRankSum=-0.944;QD=1.09;ReadPosRankSum=0.590;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:45,3:48:3:0,3,1235 0/1:30,3:33:16:16,0,875 0/0:43,2:45:55:0,55,1407 0/1:28,5:33:96:96,0,684 +chr20 10639063 . A C 667.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.255;DP=115;Dels=0.02;FS=8.076;HaplotypeScore=7.6453;MLEAC=4;MLEAF=0.500;MQ=31.81;MQ0=0;MQRankSum=-3.330;QD=5.81;ReadPosRankSum=3.387;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,10:35:99:222,0,436 0/1:16,8:24:99:148,0,239 0/1:23,7:30:99:156,0,342 0/1:16,8:24:99:184,0,264 +chr20 10653739 rs62185096 G A 337.19 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.129;DB;DP=33;Dels=0.00;FS=3.832;HaplotypeScore=2.8393;MLEAC=4;MLEAF=0.500;MQ=25.83;MQ0=0;MQRankSum=-0.199;QD=12.04;ReadPosRankSum=0.465;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,7:8:21:212,21,0 0/0:5,0:5:12:0,12,113 0/1:4,7:11:26:106,0,26 0/1:6,3:9:67:67,0,86 +chr20 13098328 . A C 142.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.877;DP=129;Dels=0.02;FS=7.111;HaplotypeScore=7.1195;MLEAC=2;MLEAF=0.250;MQ=30.48;MQ0=0;MQRankSum=-1.777;QD=2.38;ReadPosRankSum=0.199;SB=-1.020e-02 GT:AD:DP:GQ:PL 0/0:29,0:29:42:0,42,507 0/1:24,3:27:59:59,0,252 0/0:39,1:40:54:0,54,622 0/1:25,6:31:99:125,0,130 +chr20 13782196 . A G 45.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.951;DP=132;Dels=0.00;FS=17.785;HaplotypeScore=1.6653;MLEAC=1;MLEAF=0.125;MQ=37.07;MQ0=0;MQRankSum=-2.048;QD=1.35;ReadPosRankSum=0.567;SB=0.418 GT:AD:DP:GQ:PL 0/0:29,0:29:60:0,60,749 0/1:28,5:34:82:82,0,699 0/0:49,0:49:99:0,99,1262 0/0:20,0:20:57:0,57,691 +chr20 13839922 . A C 36.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.855;DP=71;Dels=0.00;FS=5.199;HaplotypeScore=3.8176;MLEAC=3;MLEAF=0.375;MQ=31.67;MQ0=0;MQRankSum=-1.374;QD=0.66;ReadPosRankSum=1.841;SB=0.116 GT:AD:DP:GQ:PL 0/1:21,2:23:26:26,0,223 0/0:15,0:15:15:0,15,184 0/1:18,1:20:8:8,0,150 0/1:10,3:13:45:45,0,84 +chr20 15843451 . T G 143.40 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.921;DP=69;Dels=0.03;FS=0.000;HaplotypeScore=11.3974;MLEAC=3;MLEAF=0.500;MQ=23.02;MQ0=0;MQRankSum=1.547;QD=2.21;ReadPosRankSum=-1.665;SB=-7.874e-02 GT:AD:DP:GQ:PL 0/1:16,3:19:73:73,0,82 0/1:18,2:20:15:15,0,107 0/1:18,5:24:94:94,0,159 ./. +chr20 15866365 rs13045800 A G 671.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=3.972;DB;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7437;MLEAC=1;MLEAF=0.125;MQ=35.99;MQ0=0;MQRankSum=-2.926;QD=12.92;ReadPosRankSum=1.469;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:29,23:52:99:708,0,961 0/0:57,0:57:99:0,171,2184 0/0:58,0:58:99:0,172,2212 0/0:18,0:18:48:0,48,612 +chr20 15914000 . T C 539.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.995;DP=133;Dels=0.00;FS=2.445;HaplotypeScore=1.5823;MLEAC=4;MLEAF=0.500;MQ=33.64;MQ0=0;MQRankSum=-2.525;QD=4.06;ReadPosRankSum=0.511;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,6:33:99:145,0,417 0/1:24,11:35:99:313,0,520 0/1:38,5:43:35:35,0,618 0/1:19,3:22:89:89,0,135 +chr20 16223865 rs2144897 T C 145.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.513;DB;DP=29;Dels=0.03;FS=5.395;HaplotypeScore=1.6531;MLEAC=3;MLEAF=0.375;MQ=31.25;MQ0=0;MQRankSum=-0.095;QD=8.06;ReadPosRankSum=0.477;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,3:5:70:89,0,70 0/0:11,0:11:12:0,12,144 0/1:5,1:6:32:32,0,75 0/1:4,2:6:67:67,0,93 +chr20 16223922 rs1541065 T C 112.08 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.039;DB;DP=21;Dels=0.00;FS=5.518;HaplotypeScore=0.2499;MLEAC=3;MLEAF=0.375;MQ=34.94;MQ0=0;MQRankSum=-0.740;QD=8.01;ReadPosRankSum=0.117;SB=-3.556e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:20:20,0,61 0/0:7,0:7:15:0,15,209 0/1:5,3:8:94:94,0,170 1/1:0,1:1:3:42,3,0 +chr20 16486788 . G T 110.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.333;DP=230;Dels=0.00;FS=104.718;HaplotypeScore=18.1700;MLEAC=3;MLEAF=0.375;MQ=29.74;MQ0=0;MQRankSum=-8.186;QD=0.66;ReadPosRankSum=0.455;SB=0.778 GT:AD:DP:GQ:PL 0/1:49,14:63:37:37,0,1312 0/0:57,5:62:34:0,34,1336 0/1:45,8:53:63:63,0,1050 0/1:39,12:51:54:54,0,997 +chr20 16730466 rs6131861 T C 74.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.167;DB;DP=33;Dels=0.00;FS=2.542;HaplotypeScore=1.6154;MLEAC=3;MLEAF=0.375;MQ=31.12;MQ0=0;MQRankSum=-0.959;QD=4.14;ReadPosRankSum=-0.389;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:10,0:10:12:0,12,160 1/1:1,4:5:9:91,9,0 0/1:11,2:13:29:29,0,341 0/0:5,0:5:6:0,6,89 +chr20 16787974 rs6034626 T C 91.67 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.774;DB;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.2676;MLEAC=6;MLEAF=1.00;MQ=12.17;MQ0=0;MQRankSum=2.887;QD=4.37;ReadPosRankSum=-0.849;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:14,1:15:3:31,3,0 ./. 1/1:1,1:2:3:32,3,0 1/1:2,2:4:6:64,6,0 +chr20 17339064 . T G 39.38 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.446;DP=117;Dels=0.03;FS=2.409;HaplotypeScore=10.1262;MLEAC=4;MLEAF=0.500;MQ=34.73;MQ0=0;MQRankSum=0.463;QD=0.34;ReadPosRankSum=0.547;SB=-5.416e-01 GT:AD:DP:GQ:PL 0/1:25,1:28:18:18,0,261 0/1:34,2:37:38:38,0,370 0/1:29,2:31:18:18,0,472 0/1:16,1:17:7:7,0,266 +chr20 17459907 . T G 38.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.103;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=4.4044;MLEAC=2;MLEAF=0.250;MQ=29.23;MQ0=0;MQRankSum=-0.351;QD=0.68;ReadPosRankSum=-2.705;SB=0.292 GT:AD:DP:GQ:PL 0/1:27,3:30:31:31,0,345 0/0:31,1:32:18:0,18,499 0/0:29,0:29:30:0,30,333 0/1:23,4:27:49:49,0,260 +chr20 17474791 rs6080717 G A 1017.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.687;DB;DP=201;Dels=0.00;FS=20.736;HaplotypeScore=1.7296;MLEAC=2;MLEAF=0.250;MQ=37.64;MQ0=0;MQRankSum=-2.737;QD=9.42;ReadPosRankSum=2.666;SB=-3.160e+02 GT:AD:DP:GQ:PL 0/1:29,20:49:99:661,0,892 0/1:44,15:59:99:398,0,1554 0/0:49,0:49:99:0,141,1869 0/0:44,0:44:99:0,126,1584 +chr20 17607832 rs11472106 C CCT 262.06 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.000;DB;DP=15;FS=0.000;HaplotypeScore=1.5802;MLEAC=6;MLEAF=0.750;MQ=24.15;MQ0=0;MQRankSum=-0.572;QD=18.72;ReadPosRankSum=0.572;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:3,2:2:6:111,6,0 1/1:2,3:3:9:156,9,0 0/1:3,1:2:39:49,0,39 0/0:1,0:1:3:0,3,55 +chr20 18022337 . C T 157.92 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.638;DP=64;Dels=0.00;FS=10.239;HaplotypeScore=7.0249;MLEAC=4;MLEAF=0.500;MQ=22.20;MQ0=0;MQRankSum=1.545;QD=2.47;ReadPosRankSum=2.895;SB=-5.836e-01 GT:AD:DP:GQ:PL 0/1:8,2:11:13:62,0,13 0/1:13,3:16:39:39,0,136 0/1:13,4:17:94:94,0,126 0/1:17,2:20:4:4,0,133 +chr20 18297193 rs1050476 T C 79.05 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.116;DB;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.9200;MLEAC=1;MLEAF=0.125;MQ=37.05;MQ0=0;MQRankSum=-1.106;QD=3.76;ReadPosRankSum=-1.353;SB=-2.307e+01 GT:AD:DP:GQ:PL 0/0:26,0:26:69:0,69,881 0/1:15,5:21:99:115,0,265 0/0:34,0:34:87:0,87,1044 0/0:25,1:27:13:0,13,515 +chr20 18448107 . T C 146.51 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.138;DP=69;Dels=0.04;FS=1.783;HaplotypeScore=14.1183;MLEAC=4;MLEAF=0.500;MQ=24.05;MQ0=0;MQRankSum=0.779;QD=2.12;ReadPosRankSum=-1.306;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:7,5:12:84:122,0,84 0/1:16,3:19:44:44,0,226 0/1:17,1:18:6:6,0,157 0/1:15,2:17:16:16,0,43 +chr20 18460614 rs6035056 A T 2384.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.995;DB;DP=101;Dels=0.00;FS=7.125;HaplotypeScore=1.1683;MLEAC=7;MLEAF=0.875;MQ=30.11;MQ0=0;MQRankSum=-0.647;QD=23.61;ReadPosRankSum=0.917;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,9:25:99:257,0,436 1/1:1,30:31:64:971,64,0 1/1:4,24:28:45:732,45,0 1/1:1,16:17:42:469,42,0 +chr20 18470684 . C A 201.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.077;DP=50;Dels=0.00;FS=2.634;HaplotypeScore=1.3070;MLEAC=4;MLEAF=0.500;MQ=30.21;MQ0=0;MQRankSum=0.097;QD=4.03;ReadPosRankSum=0.599;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,4:13:97:97,0,240 0/1:7,3:10:62:62,0,193 0/1:10,2:12:21:21,0,145 0/1:12,3:15:64:64,0,161 +chr20 18474566 rs17734238 C G 1523.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.502;DB;DP=173;Dels=0.01;FS=0.000;HaplotypeScore=1.4845;MLEAC=3;MLEAF=0.375;MQ=41.29;MQ0=0;MQRankSum=-3.917;QD=11.90;ReadPosRankSum=1.530;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,16:36:99:554,0,750 0/0:45,0:45:99:0,132,1781 0/1:36,19:55:99:611,0,1157 0/1:20,16:36:99:402,0,651 +chr20 19804592 . G C 41.30 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.559;DP=31;Dels=0.00;FS=22.270;HaplotypeScore=3.4973;MLEAC=2;MLEAF=0.333;MQ=20.39;MQ0=0;MQRankSum=1.843;QD=2.43;ReadPosRankSum=0.142;SB=-1.303e+00 GT:AD:DP:GQ:PL 0/0:7,0:7:6:0,6,79 0/1:9,2:11:22:22,0,31 ./. 0/1:4,2:6:25:57,0,25 +chr20 20139951 rs11475376 GC G 3309 . AC=8;AF=1.00;AN=8;DB;DP=86;FS=0.000;HaplotypeScore=9.5865;MLEAC=8;MLEAF=1.00;MQ=33.13;MQ0=0;QD=38.48;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:1,21:21:60:903,60,0 1/1:2,19:18:51:770,51,0 1/1:1,22:22:63:952,63,0 1/1:1,16:16:46:684,46,0 +chr20 20141596 rs971874 T A 40.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=6;Dels=0.00;FS=3.310;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=19.41;MQ0=0;MQRankSum=0.736;QD=13.34;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:33,3,0 1/1:1,1:2:3:40,3,0 ./. +chr20 20599875 . A C 47.21 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.549;DP=121;Dels=0.00;FS=2.277;HaplotypeScore=2.5985;MLEAC=2;MLEAF=0.250;MQ=34.29;MQ0=0;MQRankSum=-1.690;QD=1.63;ReadPosRankSum=-0.296;SB=-5.433e+00 GT:AD:DP:GQ:PL 0/0:27,2:29:1:0,1,698 0/0:27,2:29:0:0,0,662 0/0:32,2:34:25:0,25,865 0/1:25,4:29:81:81,0,438 +chr20 20610174 . C T 89.21 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.588;DP=240;Dels=0.01;FS=76.860;HaplotypeScore=19.6100;MLEAC=3;MLEAF=0.375;MQ=33.36;MQ0=0;MQRankSum=-2.361;QD=0.47;ReadPosRankSum=3.261;SB=0.361 GT:AD:DP:GQ:PL 0/0:49,3:52:13:0,13,1034 0/1:42,9:51:87:87,0,850 0/1:71,6:78:16:16,0,1441 0/1:52,4:57:29:29,0,1003 +chr20 21311217 . A G 137.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.167;DP=124;Dels=0.02;FS=115.754;HaplotypeScore=7.2377;MLEAC=4;MLEAF=0.500;MQ=33.18;MQ0=0;MQRankSum=-4.279;QD=1.11;ReadPosRankSum=2.161;SB=-2.855e+00 GT:AD:DP:GQ:PL 0/1:34,4:39:38:38,0,922 0/1:27,5:32:54:54,0,717 0/1:32,4:36:34:34,0,873 0/1:11,4:15:54:54,0,285 +chr20 21469228 . G A 42.54 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.092;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.0154;MLEAC=2;MLEAF=0.250;MQ=26.40;MQ0=0;MQRankSum=-0.147;QD=1.93;ReadPosRankSum=-0.913;SB=4.58 GT:AD:DP:GQ:PL 0/1:9,3:12:71:71,0,107 0/1:9,1:10:12:12,0,121 0/0:14,0:15:18:0,18,208 0/0:8,0:8:15:0,15,172 +chr20 23334721 . A T 43.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.175;DP=152;Dels=0.01;FS=35.566;HaplotypeScore=7.7036;MLEAC=3;MLEAF=0.375;MQ=26.98;MQ0=0;MQRankSum=-1.311;QD=0.39;ReadPosRankSum=1.099;SB=-3.100e+00 GT:AD:DP:GQ:PL 0/1:29,3:32:1:1,0,465 0/1:32,4:36:46:46,0,425 0/0:41,1:42:45:0,45,749 0/1:37,4:41:36:36,0,549 +chr20 23351002 . T A 254.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.392;DP=133;Dels=0.01;FS=127.100;HaplotypeScore=8.4612;MLEAC=3;MLEAF=0.375;MQ=29.20;MQ0=0;MQRankSum=-3.594;QD=2.57;ReadPosRankSum=2.160;SB=0.918 GT:AD:DP:GQ:PL 0/1:18,8:27:99:101,0,384 0/0:29,4:33:31:0,31,520 0/1:28,8:36:99:115,0,604 0/1:28,8:36:82:82,0,448 +chr20 23566114 . T C 86.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.115;DP=101;Dels=0.00;FS=8.235;HaplotypeScore=1.7266;MLEAC=3;MLEAF=0.375;MQ=27.84;MQ0=0;MQRankSum=-5.891;QD=1.16;ReadPosRankSum=1.539;SB=0.640 GT:AD:DP:GQ:PL 0/1:19,8:27:42:42,0,216 0/1:18,9:27:64:64,0,199 0/0:21,5:26:17:0,17,405 0/1:14,7:21:24:24,0,224 +chr20 23753523 rs6049096 A T 82.47 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.172;DB;DP=31;Dels=0.00;FS=5.416;HaplotypeScore=0.6573;MLEAC=4;MLEAF=0.500;MQ=25.21;MQ0=0;MQRankSum=-0.498;QD=3.30;ReadPosRankSum=-0.724;SB=0.589 GT:AD:DP:GQ:PL 1/1:0,3:3:9:106,9,0 0/1:10,3:13:1:1,0,215 0/1:6,3:9:19:19,0,154 0/0:6,0:6:9:0,9,89 +chr20 23971419 rs59388074 G A 45.27 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.738;DB;DP=131;Dels=0.02;FS=0.727;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.500;MQ=7.64;MQ0=0;MQRankSum=1.834;QD=0.69;ReadPosRankSum=0.024;SB=-2.751e+01 GT:AD:DP:GQ:PL ./. 0/1:19,12:31:25:31,0,25 0/1:19,14:33:21:49,0,21 ./. +chr20 24945079 rs10534910 AGGC A 1257.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.525;DB;DP=72;FS=0.000;HaplotypeScore=15.2226;MLEAC=3;MLEAF=0.375;MQ=34.02;MQ0=0;MQRankSum=-4.561;QD=21.32;ReadPosRankSum=2.011;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/0:13,0:12:36:0,36,794 0/1:11,8:18:99:609,0,282 0/1:16,4:20:99:356,0,728 0/1:14,4:17:99:345,0,580 +chr20 24993414 rs6132785 T C 251.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.832;DB;DP=192;Dels=0.00;FS=17.049;HaplotypeScore=3.3447;MLEAC=1;MLEAF=0.125;MQ=34.79;MQ0=0;MQRankSum=-2.980;QD=6.81;ReadPosRankSum=0.358;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/0:66,0:66:99:0,177,2263 0/1:25,12:37:99:288,0,711 0/0:48,0:48:99:0,132,1724 0/0:41,0:41:99:0,102,1190 +chr20 25000529 . G A 55.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.265;DP=23;Dels=0.04;FS=0.000;HaplotypeScore=3.8558;MLEAC=3;MLEAF=0.375;MQ=29.22;MQ0=0;MQRankSum=-0.796;QD=2.75;ReadPosRankSum=0.903;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,2:11:53:53,0,124 0/1:3,1:4:23:23,0,95 0/1:3,1:4:21:21,0,47 0/0:3,0:3:6:0,6,76 +chr20 25004071 rs4813543 G T 1985.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.261;DB;DP=61;Dels=0.00;FS=19.431;HaplotypeScore=1.0996;MLEAC=7;MLEAF=0.875;MQ=38.23;MQ0=0;MQRankSum=-1.098;QD=32.55;ReadPosRankSum=1.670;SB=-4.073e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:8:542,8,0 1/1:1,16:17:17:623,17,0 1/1:3,14:17:42:580,42,0 0/1:4,8:12:9:283,0,9 +chr20 25027526 rs6083730 G A 1679.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.621;DB;DP=112;Dels=0.00;FS=11.732;HaplotypeScore=1.4516;MLEAC=5;MLEAF=0.625;MQ=40.68;MQ0=0;MQRankSum=-1.945;QD=15.00;ReadPosRankSum=0.736;SB=-2.470e+02 GT:AD:DP:GQ:PL 0/1:12,11:23:99:397,0,322 1/1:4,20:24:60:815,60,0 0/1:25,9:34:99:280,0,878 0/1:23,8:31:99:233,0,729 +chr20 25027630 rs6106989 G A 134.34 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.417;DB;DP=34;Dels=0.00;FS=2.686;HaplotypeScore=1.3529;MLEAC=5;MLEAF=0.625;MQ=19.42;MQ0=0;MQRankSum=1.493;QD=3.95;ReadPosRankSum=0.964;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:21:21,0,73 1/1:1,5:6:12:117,12,0 0/1:5,3:8:31:31,0,85 0/1:11,1:12:10:10,0,100 +chr20 25261766 . C G 234.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.195;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=0.8302;MLEAC=4;MLEAF=0.500;MQ=33.81;MQ0=0;MQRankSum=-1.927;QD=3.35;ReadPosRankSum=-1.171;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,6:16:99:152,0,138 0/1:15,2:17:35:35,0,139 0/1:17,2:19:26:26,0,279 0/1:14,3:17:64:64,0,212 +chr20 25297909 rs2297497 G A 110.28 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.380;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=5;MLEAF=0.833;MQ=31.16;MQ0=0;MQRankSum=1.380;QD=18.38;ReadPosRankSum=-0.720;SB=-4.004e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:82,6,0 ./. 1/1:1,1:2:3:42,3,0 0/1:1,1:2:25:25,0,33 +chr20 25484467 . C A 215.71 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.185;DP=184;Dels=0.00;FS=2.278;HaplotypeScore=5.8414;MLEAC=4;MLEAF=0.500;MQ=26.12;MQ0=0;MQRankSum=-1.715;QD=1.51;ReadPosRankSum=0.403;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:39,2:41:1:0,1,314 0/1:36,10:46:99:150,0,418 0/1:47,3:50:25:25,0,427 0/1:41,6:47:81:81,0,432 +chr20 25776056 . T C 45.04 . AC=2;AF=0.333;AN=6;BaseQRankSum=2.240;DP=25;Dels=0.00;FS=17.458;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=18.32;MQ0=0;MQRankSum=-2.324;QD=2.50;ReadPosRankSum=2.155;SB=2.46 GT:AD:DP:GQ:PL 0/1:5,5:10:35:35,0,111 ./. 0/1:3,5:8:22:47,0,22 0/0:1,2:3:3:0,3,36 +chr20 26084209 rs61752035 C G 32.68 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.680;DB;DP=200;Dels=0.00;FS=1.908;HaplotypeScore=0.4939;MLEAC=3;MLEAF=0.375;MQ=8.15;MQ0=0;MQRankSum=3.171;QD=0.18;ReadPosRankSum=0.390;SB=-1.597e+01 GT:AD:DP:GQ:PL 0/1:51,1:52:8:8,0,144 0/1:57,1:58:22:22,0,31 0/1:67,2:69:22:43,0,22 0/0:21,0:21:3:0,3,23 +chr20 26258514 . T G 442.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.377;DP=92;Dels=0.00;FS=13.487;HaplotypeScore=1.8203;MLEAC=4;MLEAF=0.500;MQ=16.20;MQ0=0;MQRankSum=5.492;QD=4.81;ReadPosRankSum=4.287;SB=-2.890e+00 GT:AD:DP:GQ:PL 0/1:16,5:22:45:90,0,45 0/1:16,6:22:13:167,0,13 0/1:13,7:21:11:131,0,11 0/1:18,9:27:35:97,0,35 +chr20 29623049 rs4892328 A C 70.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=5.180;DB;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.6837;MLEAC=2;MLEAF=0.250;MQ=15.51;MQ0=0;MQRankSum=0.564;QD=1.01;ReadPosRankSum=0.530;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,11:38:76:76,0,150 0/1:22,10:32:35:35,0,206 0/0:18,12:30:5:0,5,189 0/0:10,3:13:12:0,12,103 +chr20 29628412 . T G 75.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.957;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.6180;MLEAC=4;MLEAF=0.500;MQ=19.42;MQ0=0;MQRankSum=0.537;QD=1.07;ReadPosRankSum=1.294;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,3:23:33:33,0,131 0/1:16,5:21:42:42,0,79 0/1:18,2:20:29:29,0,191 0/1:6,1:7:14:14,0,61 +chr20 29637405 rs138364835 A G 88.66 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.792;DB;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.4786;MLEAC=5;MLEAF=0.625;MQ=11.65;MQ0=0;MQRankSum=1.654;QD=0.86;ReadPosRankSum=0.710;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,2:29:22:22,0,88 0/1:25,1:26:28:28,0,87 0/1:31,3:34:18:50,0,18 1/1:12,2:14:3:31,3,0 +chr20 29652172 rs78862124 T C 1988.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.866;DB;DP=245;Dels=0.00;FS=0.575;HaplotypeScore=13.6461;MLEAC=4;MLEAF=0.500;MQ=22.28;MQ0=0;MQRankSum=0.896;QD=8.12;ReadPosRankSum=1.993;SB=-5.740e+02 GT:AD:DP:GQ:PL 0/1:29,21:50:99:404,0,221 0/1:34,39:73:99:650,0,105 0/1:32,42:74:99:710,0,106 0/1:26,22:48:99:267,0,275 +chr20 29873165 . T C 202.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.583;DP=67;Dels=0.01;FS=27.602;HaplotypeScore=3.1484;MLEAC=4;MLEAF=0.500;MQ=23.53;MQ0=0;MQRankSum=-0.155;QD=3.03;ReadPosRankSum=-0.083;SB=-2.275e+00 GT:AD:DP:GQ:PL 0/1:11,4:15:60:79,0,60 0/1:11,4:15:81:81,0,88 0/1:13,4:17:75:75,0,78 0/1:17,1:19:10:10,0,172 +chr20 29956599 . A G 91.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.225;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.4941;MLEAC=3;MLEAF=0.375;MQ=33.59;MQ0=0;MQRankSum=-0.645;QD=1.67;ReadPosRankSum=3.537;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,0:21:36:0,36,488 0/1:18,2:21:36:36,0,256 0/1:19,3:22:59:59,0,347 0/1:10,2:12:40:40,0,192 +chr20 29978115 rs6120073 G A 583.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.588;DB;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=35.09;MQ0=0;MQRankSum=-1.965;QD=9.12;ReadPosRankSum=1.265;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:42,22:64:99:620,0,1185 0/0:66,0:66:99:0,190,2432 0/0:80,0:80:99:0,238,2967 0/0:63,0:63:99:0,180,2158 +chr20 30149536 . T A 184.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.361;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7146;MLEAC=4;MLEAF=0.500;MQ=37.41;MQ0=0;MQRankSum=-2.119;QD=1.98;ReadPosRankSum=1.829;SB=-1.363e-02 GT:AD:DP:GQ:PL 0/1:20,2:22:30:30,0,495 0/1:15,5:20:99:106,0,348 0/1:27,4:31:58:58,0,626 0/1:17,3:20:33:33,0,435 +chr20 30232504 rs7269866 G A 964.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.618;DB;DP=70;Dels=0.00;FS=7.774;HaplotypeScore=3.5160;MLEAC=5;MLEAF=0.625;MQ=27.43;MQ0=0;MQRankSum=2.281;QD=13.78;ReadPosRankSum=1.934;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,16:20:48:562,48,0 0/1:8,4:12:73:73,0,180 0/1:9,5:14:87:147,0,87 0/1:15,9:24:99:228,0,116 +chr20 30432655 . T G 44.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.527;DP=87;Dels=0.00;FS=35.369;HaplotypeScore=2.1503;MLEAC=1;MLEAF=0.125;MQ=38.32;MQ0=0;MQRankSum=-3.032;QD=1.70;ReadPosRankSum=0.047;SB=-5.268e+00 GT:AD:DP:GQ:PL 0/0:14,1:15:9:0,9,495 0/0:20,1:21:37:0,37,711 0/1:21,5:26:80:80,0,716 0/0:25,0:25:69:0,69,924 +chr20 30433071 . C T 46.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.234;DP=113;Dels=0.03;FS=4.738;HaplotypeScore=4.1484;MLEAC=2;MLEAF=0.250;MQ=30.16;MQ0=0;MQRankSum=0.526;QD=0.90;ReadPosRankSum=-1.458;SB=0.032 GT:AD:DP:GQ:PL 0/0:29,0:29:42:0,42,480 0/1:19,3:23:46:46,0,307 0/1:25,3:28:42:42,0,479 0/0:29,1:30:18:0,18,469 +chr20 30534283 rs111382388 C T 254.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.320;DB;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.6781;MLEAC=1;MLEAF=0.125;MQ=38.52;MQ0=0;MQRankSum=-3.431;QD=6.54;ReadPosRankSum=-1.266;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:28,11:39:99:291,0,979 0/0:52,0:52:99:0,147,1991 0/0:52,0:52:99:0,144,1921 0/0:31,0:31:93:0,93,1257 +chr20 30605811 . G T 50.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.393;DP=28;Dels=0.04;FS=22.825;HaplotypeScore=1.1114;MLEAC=3;MLEAF=0.375;MQ=26.56;MQ0=0;MQRankSum=-2.149;QD=2.68;ReadPosRankSum=0.575;SB=1.51 GT:AD:DP:GQ:PL 0/1:4,1:5:10:10,0,71 0/1:3,2:5:13:13,0,85 0/1:5,3:8:70:70,0,92 0/0:8,1:9:15:0,15,168 +chr20 30753279 . C T 139.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.488;DP=65;Dels=0.02;FS=7.871;HaplotypeScore=8.3753;MLEAC=4;MLEAF=0.500;MQ=30.03;MQ0=0;MQRankSum=-2.440;QD=2.63;ReadPosRankSum=1.927;SB=-1.137e+00 GT:AD:DP:GQ:PL 0/1:15,2:17:25:25,0,297 0/1:10,3:14:58:58,0,146 0/1:14,7:21:96:96,0,278 0/0:10,1:12:0:0,0,220 +chr20 31021493 . G T 862.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.596;DP=244;Dels=0.00;FS=66.191;HaplotypeScore=15.5254;MLEAC=4;MLEAF=0.500;MQ=29.11;MQ0=0;MQRankSum=-3.508;QD=3.54;ReadPosRankSum=2.219;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:46,14:60:99:263,0,784 0/1:47,16:63:99:266,0,699 0/1:45,15:61:99:253,0,602 0/1:48,10:59:99:123,0,610 +chr20 31022329 . GCC G 98.78 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.632;DP=77;FS=0.000;HaplotypeScore=31.0907;MLEAC=3;MLEAF=0.375;MQ=23.23;MQ0=0;MQRankSum=-2.517;QD=1.90;ReadPosRankSum=1.190;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/0:21,0:15:30:0,30,514 0/1:15,1:8:25:25,0,100 0/1:17,5:11:95:95,0,317 0/1:11,1:3:31:31,0,46 +chr20 31022959 rs6058694 T C 6510.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.364;DB;DP=208;Dels=0.00;FS=6.153;HaplotypeScore=4.3832;MLEAC=8;MLEAF=1.00;MQ=32.61;MQ0=0;MQRankSum=3.048;QD=31.30;ReadPosRankSum=1.907;SB=-2.305e+03 GT:AD:DP:GQ:PL 1/1:6,44:50:99:1574,104,0 1/1:3,44:47:99:1562,132,0 1/1:1,60:61:99:2155,177,0 1/1:7,42:49:77:1219,77,0 +chr20 31023757 . T C 121.18 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.347;DP=167;Dels=0.01;FS=23.767;HaplotypeScore=5.7358;MLEAC=3;MLEAF=0.375;MQ=31.97;MQ0=0;MQRankSum=-1.197;QD=0.99;ReadPosRankSum=0.922;SB=-1.397e+00 GT:AD:DP:GQ:PL 0/1:41,3:45:6:6,0,900 0/1:35,5:40:69:69,0,818 0/0:44,0:44:87:0,87,1049 0/1:32,5:37:88:88,0,551 +chr20 31128302 rs880113 G A 63.66 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.988;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.3331;MLEAC=4;MLEAF=0.667;MQ=30.59;MQ0=0;MQRankSum=0.406;QD=15.91;ReadPosRankSum=0.988;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:6:0,6,78 1/1:1,1:2:3:37,3,0 1/1:0,2:2:6:67,6,0 ./. +chr20 31238690 . G T 43.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.945;DP=34;Dels=0.00;FS=9.379;HaplotypeScore=2.4501;MLEAC=4;MLEAF=0.500;MQ=23.82;MQ0=0;MQRankSum=-0.853;QD=1.29;ReadPosRankSum=1.740;SB=-1.337e+00 GT:AD:DP:GQ:PL 0/1:8,2:10:21:21,0,113 0/1:8,2:10:17:17,0,78 0/1:3,3:6:33:34,0,33 0/1:7,1:8:14:14,0,72 +chr20 31291919 rs35093495 GGGCA G 1425.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.502;DB;DP=67;FS=0.000;HaplotypeScore=11.8452;MLEAC=4;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=-1.971;QD=21.28;ReadPosRankSum=0.596;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:15,3:17:99:390,0,706 0/1:15,6:18:99:474,0,776 0/1:14,9:18:99:474,0,745 0/1:3,1:4:99:139,0,139 +chr20 31427568 . G T 117.23 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.452;DP=354;Dels=0.01;FS=54.641;HaplotypeScore=17.9064;MLEAC=1;MLEAF=0.125;MQ=30.20;MQ0=0;MQRankSum=-0.570;QD=1.35;ReadPosRankSum=0.612;SB=-6.124e+00 GT:AD:DP:GQ:PL 0/1:76,11:87:99:153,0,1526 0/0:80,5:85:7:0,7,1446 0/0:83,5:88:40:0,40,1652 0/0:85,7:92:28:0,28,1418 +chr20 31584178 rs6141862 G A 1007.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.673;DB;DP=92;Dels=0.00;FS=6.978;HaplotypeScore=0.2500;MLEAC=3;MLEAF=0.375;MQ=39.36;MQ0=0;MQRankSum=-2.010;QD=15.04;ReadPosRankSum=0.316;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/0:25,0:25:72:0,72,959 0/1:13,13:26:99:449,0,382 0/1:20,16:36:99:515,0,697 0/1:2,3:5:60:87,0,60 +chr20 31585351 rs452299 C G 211.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.002;DB;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9134;MLEAC=3;MLEAF=0.375;MQ=30.79;MQ0=0;MQRankSum=0.667;QD=4.41;ReadPosRankSum=-2.199;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,0:18:48:0,48,566 0/1:11,2:13:63:63,0,109 0/1:17,5:22:99:145,0,347 0/1:11,2:13:47:47,0,142 +chr20 31587752 rs414191 G C 77.40 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.919;DB;DP=16;Dels=0.00;FS=2.869;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=26.88;MQ0=0;MQRankSum=0.354;QD=11.06;ReadPosRankSum=0.212;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:18:0,18,196 0/1:1,3:4:22:94,0,22 0/1:2,1:3:22:22,0,36 ./. +chr20 31626790 . C G 190.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.363;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=8.1832;MLEAC=4;MLEAF=0.500;MQ=26.67;MQ0=0;MQRankSum=1.316;QD=1.42;ReadPosRankSum=1.702;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,3:25:41:41,0,198 0/1:36,3:39:50:50,0,409 0/1:31,5:36:99:103,0,326 0/1:29,3:33:39:39,0,268 +chr20 31631909 . T A 109.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.749;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.8153;MLEAC=3;MLEAF=0.375;MQ=30.45;MQ0=0;MQRankSum=-1.896;QD=1.02;ReadPosRankSum=-0.058;SB=-2.206e-02 GT:AD:DP:GQ:PL 0/1:33,3:36:25:25,0,638 0/0:32,0:32:48:0,48,537 0/1:38,6:45:60:60,0,851 0/1:22,5:27:68:68,0,324 +chr20 31644416 . C G 235.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.890;DP=98;Dels=0.01;FS=18.212;HaplotypeScore=15.5702;MLEAC=4;MLEAF=0.500;MQ=22.10;MQ0=0;MQRankSum=2.192;QD=2.40;ReadPosRankSum=2.327;SB=0.618 GT:AD:DP:GQ:PL 0/1:13,5:18:72:133,0,72 0/1:27,5:32:52:52,0,215 0/1:19,3:22:26:26,0,168 0/1:22,3:25:67:67,0,96 +chr20 31647864 rs6088084 C A 396.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.864;DB;DP=47;Dels=0.00;FS=16.646;HaplotypeScore=9.6236;MLEAC=4;MLEAF=0.500;MQ=27.11;MQ0=0;MQRankSum=0.546;QD=8.44;ReadPosRankSum=1.904;SB=-2.914e+00 GT:AD:DP:GQ:PL 0/1:4,6:11:19:175,0,19 0/1:8,4:12:38:114,0,38 0/1:8,4:13:92:106,0,92 0/1:9,2:11:44:44,0,178 +chr20 31651467 . T C 258.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.391;DP=125;Dels=0.00;FS=30.591;HaplotypeScore=3.4459;MLEAC=4;MLEAF=0.500;MQ=31.92;MQ0=0;MQRankSum=0.947;QD=2.07;ReadPosRankSum=-1.642;SB=-4.758e-02 GT:AD:DP:GQ:PL 0/1:28,3:31:67:67,0,442 0/1:23,2:25:20:20,0,394 0/1:31,4:35:62:62,0,577 0/1:27,6:34:99:152,0,489 +chr20 31656573 . C A 83.17 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.350;DP=45;Dels=0.00;FS=2.465;HaplotypeScore=0.7476;MLEAC=4;MLEAF=0.500;MQ=33.98;MQ0=0;MQRankSum=-1.257;QD=1.85;ReadPosRankSum=-2.369;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:28:28,0,73 0/1:14,1:15:7:7,0,319 0/1:12,1:13:6:6,0,272 0/1:6,3:9:83:83,0,123 +chr20 31657808 . C A 228.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.524;DP=137;Dels=0.03;FS=4.908;HaplotypeScore=10.5075;MLEAC=4;MLEAF=0.500;MQ=26.76;MQ0=0;MQRankSum=-2.016;QD=1.67;ReadPosRankSum=2.048;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,7:31:99:127,0,331 0/1:28,4:32:16:16,0,227 0/1:29,7:39:84:84,0,311 0/1:28,3:31:44:44,0,321 +chr20 31671798 rs2424946 T C 149.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.005;DB;DP=37;Dels=0.00;FS=5.116;HaplotypeScore=1.4836;MLEAC=4;MLEAF=0.500;MQ=29.47;MQ0=0;MQRankSum=1.144;QD=4.05;ReadPosRankSum=2.656;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,3:6:31:96,0,31 0/1:10,1:11:24:24,0,117 0/1:10,1:11:15:15,0,230 0/1:7,2:9:57:57,0,123 +chr20 31688241 rs11699009 T C 2251.80 . AC=6;AF=0.750;AN=8;BaseQRankSum=3.717;DB;DP=110;Dels=0.00;FS=2.119;HaplotypeScore=1.2237;MLEAC=6;MLEAF=0.750;MQ=28.55;MQ0=0;MQRankSum=-0.980;QD=20.47;ReadPosRankSum=2.636;SB=-8.573e+02 GT:AD:DP:GQ:PL 0/1:18,14:32:99:277,0,383 0/1:6,17:23:26:523,0,26 1/1:1,28:29:84:917,84,0 1/1:6,20:26:54:581,54,0 +chr20 31828254 rs6059186 T C 2015.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.688;DB;DP=192;Dels=0.00;FS=2.561;HaplotypeScore=1.2587;MLEAC=3;MLEAF=0.375;MQ=36.20;MQ0=0;MQRankSum=-7.432;QD=14.30;ReadPosRankSum=0.726;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,28:50:99:827,0,706 0/0:51,0:51:99:0,150,1980 0/1:29,24:53:99:718,0,954 0/1:21,17:38:99:514,0,698 +chr20 31894682 . G C 38.34 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.702;DP=66;Dels=0.00;FS=41.296;HaplotypeScore=2.9570;MLEAC=3;MLEAF=0.375;MQ=32.07;MQ0=0;MQRankSum=-0.038;QD=0.94;ReadPosRankSum=0.064;SB=-1.783e+00 GT:AD:DP:GQ:PL 0/1:14,3:17:52:52,0,217 0/1:10,1:11:17:17,0,223 0/0:24,1:25:25:0,25,602 0/1:12,1:13:12:12,0,249 +chr20 32441389 . C A 121.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.246;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=7.8321;MLEAC=4;MLEAF=0.500;MQ=27.90;MQ0=0;MQRankSum=-0.481;QD=1.89;ReadPosRankSum=-1.294;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:29:29,0,115 0/1:22,4:26:83:83,0,250 0/1:20,3:23:49:49,0,276 0/0:17,1:18:0:0,0,244 +chr20 33122524 . C T 41.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.745;DP=167;Dels=0.00;FS=39.569;HaplotypeScore=4.6589;MLEAC=1;MLEAF=0.125;MQ=30.31;MQ0=0;MQRankSum=-0.468;QD=1.08;ReadPosRankSum=-0.042;SB=-3.760e+00 GT:AD:DP:GQ:PL 0/1:32,7:39:78:78,0,721 0/0:42,3:45:33:0,33,970 0/0:46,4:50:47:0,47,1128 0/0:33,0:33:72:0,72,778 +chr20 33346556 rs11468960 ATC A 1714.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.303;DB;DP=128;FS=0.000;HaplotypeScore=15.8864;MLEAC=4;MLEAF=0.500;MQ=32.85;MQ0=0;MQRankSum=-1.745;QD=13.39;ReadPosRankSum=1.343;SB=-2.900e+01 GT:AD:DP:GQ:PL 0/1:24,9:30:99:332,0,1014 0/1:22,13:29:99:530,0,732 0/1:16,15:28:99:705,0,514 0/1:23,5:22:99:199,0,743 +chr20 33438940 . G A 296.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.925;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5827;MLEAC=3;MLEAF=0.375;MQ=37.03;MQ0=0;MQRankSum=-1.301;QD=4.36;ReadPosRankSum=-0.781;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/1:17,4:22:99:102,0,444 0/0:26,0:28:60:0,60,788 0/1:17,5:22:99:135,0,342 0/1:20,4:24:99:103,0,376 +chr20 33440239 . G T 30.71 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.602;DP=99;Dels=0.00;FS=21.483;HaplotypeScore=3.1890;MLEAC=2;MLEAF=0.250;MQ=32.56;MQ0=0;MQRankSum=-0.861;QD=0.57;ReadPosRankSum=-1.074;SB=-1.102e+00 GT:AD:DP:GQ:PL 0/0:25,2:27:4:0,4,554 0/0:17,1:18:16:0,16,397 0/1:27,3:30:47:47,0,462 0/1:22,2:24:24:24,0,492 +chr20 33508509 . T G 121.19 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.665;DP=70;Dels=0.00;FS=4.762;HaplotypeScore=2.7140;MLEAC=2;MLEAF=0.250;MQ=30.14;MQ0=0;MQRankSum=1.973;QD=3.28;ReadPosRankSum=-1.206;SB=8.233e-03 GT:AD:DP:GQ:PL 0/0:16,1:17:2:0,2,258 0/1:19,6:25:99:150,0,331 0/0:16,0:16:27:0,27,311 0/1:11,1:12:10:10,0,131 +chr20 33575973 . C A 40.33 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.148;DP=91;Dels=0.02;FS=19.391;HaplotypeScore=21.7900;MLEAC=3;MLEAF=0.375;MQ=18.50;MQ0=0;MQRankSum=1.767;QD=0.61;ReadPosRankSum=0.815;SB=0.154 GT:AD:DP:GQ:PL 0/1:17,1:18:11:11,0,127 0/1:19,3:22:36:45,0,36 0/1:22,3:25:27:27,0,138 0/0:24,0:24:21:0,21,217 +chr20 33578875 . T G 363.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.703;DP=101;Dels=0.01;FS=24.020;HaplotypeScore=8.2236;MLEAC=4;MLEAF=0.500;MQ=28.65;MQ0=0;MQRankSum=-1.509;QD=3.60;ReadPosRankSum=4.029;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,7:26:99:126,0,308 0/1:20,5:25:84:84,0,269 0/1:19,8:27:99:135,0,312 0/1:16,6:22:61:61,0,337 +chr20 33578899 rs2425009 T C 1086.15 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.401;DB;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=3.9381;MLEAC=7;MLEAF=0.875;MQ=25.37;MQ0=0;MQRankSum=3.126;QD=18.41;ReadPosRankSum=-0.442;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:1,14:15:36:405,36,0 1/1:5,8:13:21:206,21,0 1/1:5,14:20:36:416,36,0 0/1:3,7:10:9:102,0,9 +chr20 33590836 . G A 104.95 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.537;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.8888;MLEAC=5;MLEAF=0.625;MQ=20.53;MQ0=0;MQRankSum=1.903;QD=5.00;ReadPosRankSum=-1.903;SB=16.90 GT:AD:DP:GQ:PL 0/1:5,3:8:23:53,0,23 1/1:1,2:4:6:48,6,0 0/0:6,0:6:3:0,3,37 1/1:7,2:9:6:48,6,0 +chr20 33725877 . C A 234.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.469;DP=116;Dels=0.02;FS=0.000;HaplotypeScore=30.3979;MLEAC=4;MLEAF=0.500;MQ=24.08;MQ0=0;MQRankSum=-0.634;QD=2.02;ReadPosRankSum=2.395;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:56:56,0,154 0/1:29,3:32:20:20,0,225 0/1:26,7:33:99:119,0,242 0/1:22,5:27:82:82,0,126 +chr20 33872168 . G T 40.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.711;DP=84;Dels=0.04;FS=2.417;HaplotypeScore=17.7302;MLEAC=3;MLEAF=0.375;MQ=23.29;MQ0=0;MQRankSum=0.041;QD=0.65;ReadPosRankSum=1.218;SB=0.292 GT:AD:DP:GQ:PL 0/1:21,1:23:5:5,0,239 0/0:18,1:19:4:0,4,220 0/1:19,4:23:66:66,0,172 0/1:15,1:16:9:9,0,132 +chr20 34025660 . G A 203.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.797;DP=73;Dels=0.00;FS=9.729;HaplotypeScore=2.3034;MLEAC=3;MLEAF=0.375;MQ=31.73;MQ0=0;MQRankSum=0.937;QD=3.83;ReadPosRankSum=0.456;SB=2.59 GT:AD:DP:GQ:PL 0/1:20,2:22:48:48,0,302 0/1:12,5:17:77:77,0,289 0/0:19,1:20:11:0,11,530 0/1:10,4:14:99:121,0,105 +chr20 34068026 . G C 38.19 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.824;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.0820;MLEAC=1;MLEAF=0.125;MQ=28.16;MQ0=0;MQRankSum=0.680;QD=4.24;ReadPosRankSum=-0.967;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:18:0,18,191 0/1:6,3:9:74:74,0,116 0/0:8,0:8:9:0,9,107 0/0:9,0:9:18:0,18,176 +chr20 34144817 . T C 126.73 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.736;DP=82;Dels=0.01;FS=30.082;HaplotypeScore=4.1940;MLEAC=4;MLEAF=0.500;MQ=30.22;MQ0=0;MQRankSum=-0.667;QD=1.55;ReadPosRankSum=2.324;SB=-1.558e-01 GT:AD:DP:GQ:PL 0/1:19,3:22:32:32,0,505 0/1:14,3:17:54:54,0,231 0/1:15,3:18:69:69,0,271 0/1:21,3:24:14:14,0,581 +chr20 34176315 . T A 30.20 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.269;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.6485;MLEAC=2;MLEAF=0.333;MQ=29.30;MQ0=0;MQRankSum=1.211;QD=1.78;ReadPosRankSum=-1.211;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:3:0,3,43 0/1:5,2:7:25:50,0,25 0/1:9,1:10:17:17,0,116 ./. +chr20 34269850 . C A 69.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.346;DP=74;Dels=0.00;FS=36.093;HaplotypeScore=10.6695;MLEAC=3;MLEAF=0.375;MQ=27.10;MQ0=0;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.766;SB=-1.959e+00 GT:AD:DP:GQ:PL 0/1:18,3:22:27:27,0,199 0/0:18,1:19:2:0,2,310 0/1:16,4:21:74:74,0,236 0/1:11,1:12:9:9,0,152 +chr20 34300948 rs113527736 A C 54.90 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.513;DB;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7369;MLEAC=4;MLEAF=0.500;MQ=26.87;MQ0=0;MQRankSum=1.464;QD=0.56;ReadPosRankSum=-1.597;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,2:22:45:45,0,122 0/1:30,2:32:9:9,0,346 0/1:29,2:31:36:36,0,248 0/1:12,1:13:6:6,0,175 +chr20 34527054 . T G 34.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.788;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.0848;MLEAC=1;MLEAF=0.125;MQ=37.41;MQ0=0;MQRankSum=-2.388;QD=1.67;ReadPosRankSum=0.796;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/0:22,1:23:31:0,31,610 0/0:21,0:22:48:0,48,610 0/0:28,0:28:60:0,60,768 0/1:17,4:21:71:71,0,331 +chr20 34564044 . T G 144.23 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.177;DP=130;Dels=0.05;FS=0.000;HaplotypeScore=16.0118;MLEAC=2;MLEAF=0.250;MQ=28.82;MQ0=0;MQRankSum=-3.245;QD=2.49;ReadPosRankSum=5.528;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,5:26:99:111,0,262 0/0:32,3:35:11:0,11,554 0/0:32,3:35:8:0,8,581 0/1:22,6:28:74:74,0,274 +chr20 34834348 . G C 32.13 . AC=1;AF=0.167;AN=6;BaseQRankSum=-0.354;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.167;MQ=26.60;MQ0=0;MQRankSum=1.532;QD=6.43;ReadPosRankSum=0.825;SB=-4.169e+00 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,66 0/0:5,0:5:6:0,6,61 0/1:3,2:5:33:66,0,33 ./. +chr20 35545221 . A T 276.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.561;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.5875;MLEAC=4;MLEAF=0.500;MQ=27.03;MQ0=0;MQRankSum=-0.022;QD=2.05;ReadPosRankSum=1.539;SB=-1.174e-02 GT:AD:DP:GQ:PL 0/1:35,5:40:80:80,0,158 0/1:33,4:37:57:57,0,208 0/1:32,5:37:76:76,0,229 0/1:16,5:21:82:106,0,82 +chr20 35579892 . G A 197.91 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.851;DP=150;Dels=0.00;FS=4.512;HaplotypeScore=7.6639;MLEAC=4;MLEAF=0.500;MQ=33.62;MQ0=0;MQRankSum=-2.188;QD=1.32;ReadPosRankSum=0.518;SB=-1.643e+00 GT:AD:DP:GQ:PL 0/1:30,7:37:99:132,0,535 0/1:30,6:37:89:89,0,455 0/1:37,2:39:1:1,0,754 0/1:34,2:37:16:16,0,362 +chr20 35752071 . G T 116.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.119;DP=212;Dels=0.00;FS=36.448;HaplotypeScore=31.5950;MLEAC=3;MLEAF=0.375;MQ=30.27;MQ0=0;MQRankSum=-2.605;QD=0.70;ReadPosRankSum=1.126;SB=-2.361e+01 GT:AD:DP:GQ:PL 0/1:43,3:46:1:1,0,557 0/0:45,2:47:34:0,34,643 0/1:56,6:63:64:64,0,937 0/1:45,10:55:91:91,0,770 +chr20 35769592 rs1744769 T C 7215.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.033;DB;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.0343;MLEAC=8;MLEAF=1.00;MQ=38.27;MQ0=0;MQRankSum=1.797;QD=37.19;ReadPosRankSum=3.023;SB=-3.404e+03 GT:AD:DP:GQ:PL 1/1:3,43:46:99:1667,101,0 1/1:0,51:51:99:2045,153,0 1/1:4,64:68:99:2544,163,0 1/1:3,26:29:46:959,46,0 +chr20 35929662 . G A 168.78 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.142;DP=52;Dels=0.04;FS=8.572;HaplotypeScore=7.4432;MLEAC=8;MLEAF=1.00;MQ=15.41;MQ0=0;MQRankSum=3.305;QD=3.25;ReadPosRankSum=2.494;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:7,5:12:12:105,12,0 1/1:13,2:15:3:23,3,0 1/1:10,3:13:6:56,6,0 1/1:8,2:10:3:22,3,0 +chr20 36149605 . C A 81.06 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.851;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.5088;MLEAC=4;MLEAF=0.667;MQ=21.41;MQ0=0;MQRankSum=0.103;QD=4.50;ReadPosRankSum=0.470;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:21:21,0,74 1/1:5,2:7:6:51,6,0 0/1:3,2:5:22:49,0,22 ./. +chr20 36405682 . A C 664.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.327;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.6803;MLEAC=4;MLEAF=0.500;MQ=29.40;MQ0=0;MQRankSum=2.273;QD=8.10;ReadPosRankSum=3.150;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,10:29:99:259,0,201 0/1:8,7:15:41:188,0,41 0/1:19,7:26:99:181,0,165 0/1:9,3:12:65:79,0,65 +chr20 36776577 . T G 1050.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.642;DP=120;Dels=0.03;FS=2.957;HaplotypeScore=7.6657;MLEAC=4;MLEAF=0.500;MQ=31.51;MQ0=0;MQRankSum=-2.531;QD=8.75;ReadPosRankSum=2.723;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,10:22:99:298,0,302 0/1:26,11:37:99:220,0,436 0/1:22,12:34:99:332,0,579 0/1:14,10:24:99:243,0,324 +chr20 36859711 rs1205418 G A 640.47 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.091;DB;DP=34;Dels=0.00;FS=2.120;HaplotypeScore=1.2272;MLEAC=8;MLEAF=1.00;MQ=27.89;MQ0=0;MQRankSum=1.315;QD=18.84;ReadPosRankSum=2.025;SB=-3.374e+02 GT:AD:DP:GQ:PL 1/1:3,3:6:6:64,6,0 1/1:4,8:12:21:216,21,0 1/1:4,8:12:24:293,24,0 1/1:1,3:4:9:106,9,0 +chr20 37002660 rs151285189 C G 85.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.921;DB;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=1.5378;MLEAC=4;MLEAF=0.500;MQ=31.57;MQ0=0;MQRankSum=-1.671;QD=1.30;ReadPosRankSum=-0.421;SB=-2.942e-01 GT:AD:DP:GQ:PL 0/0:21,2:23:1:0,1,332 0/1:22,2:24:25:25,0,208 0/1:19,4:24:67:67,0,320 0/1:15,2:17:34:34,0,174 +chr20 37005369 . T A 115.98 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.239;DP=84;Dels=0.02;FS=0.000;HaplotypeScore=43.8924;MLEAC=4;MLEAF=0.500;MQ=17.19;MQ0=0;MQRankSum=1.352;QD=1.84;ReadPosRankSum=-2.114;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:20:61:61,0,85 0/0:20,0:20:9:0,9,78 1/1:18,4:22:9:79,9,0 0/1:16,4:20:22:22,0,79 +chr20 37168549 . T G 254.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.742;DP=195;Dels=0.00;FS=16.554;HaplotypeScore=3.6746;MLEAC=4;MLEAF=0.500;MQ=35.50;MQ0=0;MQRankSum=-3.907;QD=1.31;ReadPosRankSum=-0.790;SB=-2.012e+00 GT:AD:DP:GQ:PL 0/1:51,7:58:70:70,0,1023 0/1:49,4:53:33:33,0,789 0/1:39,8:47:99:162,0,568 0/1:33,4:37:32:32,0,712 +chr20 37202907 . T C 77.40 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.501;DP=150;Dels=0.00;FS=23.289;HaplotypeScore=1.8267;MLEAC=3;MLEAF=0.375;MQ=35.02;MQ0=0;MQRankSum=-0.489;QD=0.75;ReadPosRankSum=1.843;SB=0.096 GT:AD:DP:GQ:PL 0/1:39,7:46:99:104,0,889 0/1:40,3:43:6:6,0,801 0/0:45,2:47:28:0,28,930 0/1:13,1:14:8:8,0,225 +chr20 37396193 . T G 93.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.629;DP=192;Dels=0.00;FS=46.783;HaplotypeScore=1.8980;MLEAC=3;MLEAF=0.375;MQ=33.03;MQ0=0;MQRankSum=-4.514;QD=0.64;ReadPosRankSum=3.235;SB=-1.469e-02 GT:AD:DP:GQ:PL 0/0:44,1:45:75:0,75,951 0/1:48,6:54:47:47,0,1197 0/1:56,7:63:58:58,0,1101 0/1:26,4:30:32:32,0,409 +chr20 37580390 . C A 185.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.561;DP=213;Dels=0.01;FS=42.420;HaplotypeScore=17.8780;MLEAC=4;MLEAF=0.500;MQ=33.98;MQ0=0;MQRankSum=-2.222;QD=0.87;ReadPosRankSum=2.222;SB=-8.460e-02 GT:AD:DP:GQ:PL 0/1:50,5:55:57:57,0,942 0/1:45,6:51:35:35,0,1032 0/1:59,5:64:17:17,0,1482 0/1:34,7:41:99:119,0,574 +chr20 37601243 rs16987712 A G 174 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.310;DB;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=4.3204;MLEAC=1;MLEAF=0.125;MQ=32.98;MQ0=0;MQRankSum=0.225;QD=8.70;ReadPosRankSum=-0.564;SB=-6.798e+01 GT:AD:DP:GQ:PL 0/1:13,7:20:99:210,0,308 0/0:39,0:40:90:0,90,1094 0/0:37,0:37:90:0,90,1078 0/0:12,0:12:21:0,21,284 +chr20 39832292 . C A 46.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.109;DP=129;Dels=0.01;FS=122.068;HaplotypeScore=13.9786;MLEAC=3;MLEAF=0.375;MQ=34.48;MQ0=0;MQRankSum=-5.165;QD=0.44;ReadPosRankSum=0.004;SB=-1.974e+00 GT:AD:DP:GQ:PL 0/0:23,1:25:39:0,39,813 0/1:28,6:34:1:1,0,737 0/1:37,4:41:27:27,0,905 0/1:20,7:28:58:58,0,494 +chr20 39990762 . T C 92.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.414;DP=160;Dels=0.00;FS=64.008;HaplotypeScore=2.7263;MLEAC=4;MLEAF=0.500;MQ=39.03;MQ0=0;MQRankSum=-3.789;QD=0.58;ReadPosRankSum=-0.565;SB=-1.276e+00 GT:AD:DP:GQ:PL 0/1:37,5:42:56:56,0,1199 0/1:31,5:36:63:63,0,958 0/1:39,3:42:8:8,0,1229 0/1:36,4:40:7:7,0,975 +chr20 39992330 . C A 143.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.227;DP=52;Dels=0.00;FS=94.310;HaplotypeScore=4.3044;MLEAC=4;MLEAF=0.500;MQ=25.91;MQ0=0;MQRankSum=-3.480;QD=2.76;ReadPosRankSum=0.580;SB=0.670 GT:AD:DP:GQ:PL 0/1:11,3:14:59:59,0,242 0/1:7,5:12:61:61,0,108 0/1:7,7:14:49:49,0,158 0/1:8,4:12:17:17,0,113 +chr20 40714316 . C T 240.61 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.373;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=3.0552;MLEAC=5;MLEAF=0.625;MQ=27.55;MQ0=0;MQRankSum=2.860;QD=3.82;ReadPosRankSum=-0.764;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:17:115,0,17 0/1:13,2:15:38:38,0,130 0/1:17,2:19:35:35,0,129 1/1:13,3:16:9:97,9,0 +chr20 41408918 . A G 35.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.652;DP=175;Dels=0.00;FS=6.861;HaplotypeScore=4.2926;MLEAC=1;MLEAF=0.125;MQ=36.75;MQ0=0;MQRankSum=-0.814;QD=0.82;ReadPosRankSum=1.611;SB=-4.663e+00 GT:AD:DP:GQ:PL 0/1:38,5:43:71:71,0,718 0/0:41,1:42:69:0,69,1048 0/0:55,1:56:90:0,90,1357 0/0:32,2:34:12:0,12,722 +chr20 42159052 . T C 103.32 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.222;DP=125;Dels=0.02;FS=2.260;HaplotypeScore=5.4868;MLEAC=2;MLEAF=0.250;MQ=36.58;MQ0=0;MQRankSum=-1.347;QD=1.54;ReadPosRankSum=-1.461;SB=3.02 GT:AD:DP:GQ:PL 0/1:29,3:32:52:52,0,514 0/0:24,1:25:6:0,6,443 0/0:30,2:32:15:0,15,786 0/1:29,5:34:92:92,0,731 +chr20 42302385 . T G 103.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.634;DP=123;Dels=0.00;FS=4.471;HaplotypeScore=1.9485;MLEAC=3;MLEAF=0.375;MQ=32.48;MQ0=0;MQRankSum=0.400;QD=1.12;ReadPosRankSum=-0.294;SB=1.06 GT:AD:DP:GQ:PL 0/1:31,5:36:79:79,0,601 0/0:29,1:30:21:0,21,502 0/1:28,3:31:21:21,0,557 0/1:22,4:26:47:47,0,343 +chr20 42826127 . C A 37.25 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.414;DP=142;Dels=0.04;FS=42.685;HaplotypeScore=26.8104;MLEAC=2;MLEAF=0.250;MQ=31.33;MQ0=0;MQRankSum=0.217;QD=0.56;ReadPosRankSum=-1.644;SB=-1.657e+00 GT:AD:DP:GQ:PL 0/0:33,2:35:6:0,6,627 0/0:35,1:37:23:0,23,558 0/1:35,3:39:44:44,0,505 0/1:22,2:25:34:34,0,283 +chr20 42846759 rs7273089 C T 37.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.727;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.3670;MLEAC=4;MLEAF=1.00;MQ=20.24;MQ0=0;MQRankSum=0.727;QD=7.40;ReadPosRankSum=-0.727;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:1,2:3:3:40,3,0 1/1:1,1:2:3:30,3,0 ./. +chr20 42876012 . G C 99.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.266;DP=27;Dels=0.04;FS=20.434;HaplotypeScore=5.7559;MLEAC=4;MLEAF=0.500;MQ=25.05;MQ0=0;MQRankSum=2.583;QD=3.69;ReadPosRankSum=0.264;SB=1.70 GT:AD:DP:GQ:PL 0/1:3,2:5:21:61,0,21 0/1:7,1:8:16:16,0,40 0/1:7,1:8:16:34,0,16 0/1:4,1:5:26:31,0,26 +chr20 42886009 . G T 554.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.245;DP=58;Dels=0.02;FS=13.871;HaplotypeScore=11.6803;MLEAC=4;MLEAF=0.500;MQ=25.06;MQ0=0;MQRankSum=1.333;QD=9.56;ReadPosRankSum=2.100;SB=-2.766e+00 GT:AD:DP:GQ:PL 0/1:7,7:14:44:162,0,44 0/1:7,6:13:40:144,0,40 0/1:11,7:18:99:147,0,107 0/1:7,5:12:23:144,0,23 +chr20 42966037 . T G 351.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.522;DP=134;Dels=0.00;FS=41.168;HaplotypeScore=2.7069;MLEAC=4;MLEAF=0.500;MQ=34.02;MQ0=0;MQRankSum=-0.568;QD=2.62;ReadPosRankSum=0.538;SB=-2.047e-02 GT:AD:DP:GQ:PL 0/1:31,3:34:27:27,0,808 0/1:31,5:36:62:62,0,689 0/1:31,4:35:34:34,0,730 0/1:19,10:29:99:271,0,294 +chr20 43042402 . A G 164.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.432;DP=43;Dels=0.05;FS=11.137;HaplotypeScore=6.7124;MLEAC=4;MLEAF=0.500;MQ=28.10;MQ0=0;MQRankSum=-2.387;QD=3.83;ReadPosRankSum=-1.127;SB=-7.371e-03 GT:AD:DP:GQ:PL 0/1:6,2:8:49:49,0,52 0/1:7,5:12:92:92,0,130 0/1:9,2:11:32:32,0,121 0/1:8,2:10:34:34,0,157 +chr20 43052570 rs2273618 T C 279.76 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.422;DB;DP=32;Dels=0.03;FS=13.752;HaplotypeScore=1.2643;MLEAC=6;MLEAF=0.750;MQ=24.65;MQ0=0;MQRankSum=-0.022;QD=8.74;ReadPosRankSum=1.113;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:1,4:5:24:70,0,24 0/1:9,2:11:33:33,0,221 1/1:4,5:9:12:129,12,0 1/1:2,4:6:9:93,9,0 +chr20 43804823 rs111420017 A G 216.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.129;DB;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.1485;MLEAC=1;MLEAF=0.125;MQ=32.68;MQ0=0;MQRankSum=-1.695;QD=6.58;ReadPosRankSum=0.863;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,0:28:75:0,75,935 0/1:21,11:33:99:253,0,556 0/0:36,0:36:90:0,90,1103 0/0:25,1:26:54:0,54,647 +chr20 43850314 . A G 200.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.719;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.6995;MLEAC=4;MLEAF=0.500;MQ=23.82;MQ0=0;MQRankSum=1.860;QD=2.57;ReadPosRankSum=3.656;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,3:24:53:53,0,121 0/1:18,6:24:13:131,0,13 0/1:19,2:21:21:21,0,177 0/1:7,2:9:38:38,0,45 +chr20 43880942 . T G 49.05 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.906;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=6.6838;MLEAC=2;MLEAF=0.250;MQ=29.11;MQ0=0;MQRankSum=-0.325;QD=1.96;ReadPosRankSum=0.325;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:6:6,0,218 0/0:15,1:16:8:0,8,355 0/0:13,1:14:7:0,7,233 0/1:9,3:12:54:81,0,54 +chr20 44119582 rs6130847 C T 374.71 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.204;DB;DP=25;Dels=0.00;FS=2.154;HaplotypeScore=0.3893;MLEAC=7;MLEAF=0.875;MQ=29.27;MQ0=0;MQRankSum=1.603;QD=14.99;ReadPosRankSum=0.534;SB=-7.334e+01 GT:AD:DP:GQ:PL 1/1:1,5:6:15:175,15,0 0/1:7,5:12:99:137,0,117 1/1:2,1:3:3:34,3,0 1/1:2,2:4:6:71,6,0 +chr20 44170712 rs11594 C A 2162.98 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.615;DB;DP=67;Dels=0.00;FS=8.001;HaplotypeScore=1.8881;MLEAC=8;MLEAF=1.00;MQ=36.17;MQ0=0;MQRankSum=3.326;QD=32.28;ReadPosRankSum=0.933;SB=-4.101e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:42:531,42,0 1/1:3,10:13:30:408,30,0 1/1:4,20:24:60:779,60,0 1/1:4,12:16:36:484,36,0 +chr20 44181669 rs6032298 A G 1175.79 . AC=6;AF=0.750;AN=8;BaseQRankSum=-3.620;DB;DP=108;Dels=0.01;FS=9.479;HaplotypeScore=3.0734;MLEAC=6;MLEAF=0.750;MQ=30.39;MQ0=0;MQRankSum=-2.579;QD=10.89;ReadPosRankSum=0.149;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,7:33:99:138,0,656 0/1:21,9:30:99:128,0,561 1/1:10,21:31:43:655,43,0 1/1:4,9:13:27:301,27,0 +chr20 44187715 . T G 63.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.574;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8127;MLEAC=3;MLEAF=0.375;MQ=31.08;MQ0=0;MQRankSum=-0.804;QD=0.96;ReadPosRankSum=2.183;SB=-1.191e-02 GT:AD:DP:GQ:PL 0/1:26,2:28:47:47,0,319 0/0:28,0:28:24:0,24,282 0/1:26,3:29:46:46,0,446 0/1:8,1:9:13:13,0,60 +chr20 44439884 . C G 90.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.011;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.2344;MLEAC=1;MLEAF=0.125;MQ=29.87;MQ0=0;MQRankSum=-0.957;QD=2.81;ReadPosRankSum=-1.119;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:37,1:38:61:0,61,1008 0/0:36,2:38:18:0,18,712 0/0:50,0:50:90:0,90,1035 0/1:26,6:32:99:126,0,353 +chr20 44512607 . A T 49.07 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.878;DP=139;Dels=0.00;FS=42.591;HaplotypeScore=1.4726;MLEAC=2;MLEAF=0.250;MQ=35.93;MQ0=0;MQRankSum=-3.549;QD=0.70;ReadPosRankSum=1.030;SB=-2.981e+00 GT:AD:DP:GQ:PL 0/1:32,3:35:6:6,0,917 0/0:31,3:34:4:0,4,658 0/0:33,2:35:24:0,24,826 0/1:29,6:35:81:81,0,815 +chr20 44515480 . G C 33.86 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.405;DP=157;Dels=0.02;FS=13.872;HaplotypeScore=14.2354;MLEAC=2;MLEAF=0.250;MQ=28.71;MQ0=0;MQRankSum=-1.334;QD=0.38;ReadPosRankSum=1.354;SB=-1.560e+00 GT:AD:DP:GQ:PL 0/0:33,0:33:69:0,69,756 0/1:42,2:44:7:7,0,430 0/1:37,6:43:66:66,0,595 0/0:32,2:34:29:0,29,693 +chr20 44522594 rs4810476 A G 1317.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.488;DB;DP=116;Dels=0.00;FS=5.308;HaplotypeScore=1.9724;MLEAC=3;MLEAF=0.375;MQ=36.99;MQ0=0;MQRankSum=-0.669;QD=14.97;ReadPosRankSum=-0.559;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,0:28:69:0,69,889 0/1:10,17:27:99:572,0,243 0/1:21,12:33:99:379,0,650 0/1:16,12:28:99:410,0,416 +chr20 44526736 . T G 31.75 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.974;DP=96;Dels=0.00;FS=2.318;HaplotypeScore=5.0015;MLEAC=2;MLEAF=0.250;MQ=33.00;MQ0=0;MQRankSum=-1.064;QD=0.61;ReadPosRankSum=1.129;SB=-1.741e-01 GT:AD:DP:GQ:PL 0/1:23,3:26:19:19,0,672 0/1:22,4:26:54:54,0,401 0/0:21,0:21:36:0,36,401 0/0:22,1:23:24:0,24,515 +chr20 44531095 . A T 88.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.478;DP=145;Dels=0.00;FS=105.807;HaplotypeScore=12.7519;MLEAC=2;MLEAF=0.250;MQ=33.12;MQ0=0;MQRankSum=-4.166;QD=1.38;ReadPosRankSum=1.685;SB=-3.368e-01 GT:AD:DP:GQ:PL 0/1:24,5:29:68:68,0,695 0/1:30,5:35:62:62,0,773 0/0:34,2:36:33:0,33,1057 0/0:42,3:45:51:0,51,1171 +chr20 44538287 . G T 31.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.147;DP=137;Dels=0.01;FS=24.725;HaplotypeScore=26.1750;MLEAC=3;MLEAF=0.375;MQ=24.73;MQ0=0;MQRankSum=-0.914;QD=0.34;ReadPosRankSum=1.856;SB=0.285 GT:AD:DP:GQ:PL 0/1:29,2:31:12:12,0,363 0/1:25,3:28:43:43,0,184 0/0:41,4:45:14:0,14,502 0/1:28,3:31:19:19,0,245 +chr20 44574533 rs11696196 C T 3059.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.735;DB;DP=128;Dels=0.01;FS=12.084;HaplotypeScore=1.1240;MLEAC=6;MLEAF=0.750;MQ=36.74;MQ0=0;MQRankSum=-1.688;QD=23.90;ReadPosRankSum=1.231;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:22,10:32:99:313,0,613 0/1:17,12:29:99:377,0,499 1/1:2,32:34:93:1244,93,0 1/1:1,31:32:93:1172,93,0 +chr20 44596396 . A T 129.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.185;DP=66;Dels=0.00;FS=66.467;HaplotypeScore=9.0707;MLEAC=3;MLEAF=0.375;MQ=30.32;MQ0=0;MQRankSum=-1.548;QD=2.55;ReadPosRankSum=1.747;SB=-3.729e-01 GT:AD:DP:GQ:PL 0/1:6,2:8:49:49,0,125 0/1:19,7:26:96:96,0,392 0/0:14,1:15:3:0,3,330 0/1:15,2:17:26:26,0,297 +chr20 44680476 . A G 314.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.489;DP=71;Dels=0.00;FS=1.981;HaplotypeScore=4.9544;MLEAC=4;MLEAF=0.500;MQ=29.33;MQ0=0;MQRankSum=-0.298;QD=4.43;ReadPosRankSum=0.107;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,4:17:70:70,0,112 0/1:11,8:19:21:183,0,21 0/1:15,3:18:65:65,0,139 0/1:13,3:17:39:39,0,117 +chr20 44980916 . G C 53.22 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.128;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=13.0770;MLEAC=1;MLEAF=0.125;MQ=22.94;MQ0=0;MQRankSum=-0.866;QD=1.84;ReadPosRankSum=2.856;SB=20.83 GT:AD:DP:GQ:PL 0/0:20,0:20:15:0,15,178 0/1:23,6:29:89:89,0,147 0/0:25,0:27:18:0,18,186 0/0:18,1:21:21:0,21,216 +chr20 45017945 . G A 78.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.950;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.0852;MLEAC=2;MLEAF=0.250;MQ=20.27;MQ0=0;MQRankSum=2.064;QD=2.31;ReadPosRankSum=-1.444;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,0:27:18:0,18,220 0/1:10,2:12:29:29,0,123 0/0:24,0:24:24:0,24,269 0/1:17,5:22:91:91,0,131 +chr20 45113281 rs678628 T C 878.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.041;DB;DP=111;Dels=0.00;FS=4.944;HaplotypeScore=1.3587;MLEAC=3;MLEAF=0.375;MQ=32.44;MQ0=0;MQRankSum=-1.547;QD=11.56;ReadPosRankSum=1.347;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,9:24:99:258,0,407 0/0:35,0:35:93:0,93,1195 0/1:22,20:42:99:543,0,519 0/1:6,4:10:99:121,0,107 +chr20 45130407 rs146016008 T C 632.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=6.185;DB;DP=239;Dels=0.01;FS=2.799;HaplotypeScore=3.6841;MLEAC=1;MLEAF=0.125;MQ=34.16;MQ0=0;MQRankSum=-0.555;QD=9.74;ReadPosRankSum=0.441;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/0:66,1:68:99:0,145,2189 0/1:41,24:65:99:669,0,1121 0/0:74,0:74:99:0,199,2414 0/0:30,0:30:66:0,66,797 +chr20 45212087 . A T 57 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.284;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=5.3226;MLEAC=1;MLEAF=0.125;MQ=29.76;MQ0=0;MQRankSum=-0.498;QD=3.56;ReadPosRankSum=1.322;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:51:0,51,584 0/1:11,4:15:93:93,0,210 0/0:16,0:17:39:0,39,406 0/0:9,0:9:24:0,24,279 +chr20 45315539 . C T 45.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.396;DP=172;Dels=0.01;FS=16.154;HaplotypeScore=22.4913;MLEAC=3;MLEAF=0.375;MQ=30.94;MQ0=0;MQRankSum=0.286;QD=0.39;ReadPosRankSum=2.246;SB=-2.742e-01 GT:AD:DP:GQ:PL 0/1:36,3:39:62:62,0,313 0/1:39,3:42:13:13,0,533 0/0:49,2:51:10:0,10,644 0/1:37,1:38:13:13,0,205 +chr20 45354369 . A G 40.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.737;DP=158;Dels=0.00;FS=31.971;HaplotypeScore=2.3266;MLEAC=2;MLEAF=0.250;MQ=36.41;MQ0=0;MQRankSum=-2.045;QD=0.48;ReadPosRankSum=0.190;SB=-1.636e+00 GT:AD:DP:GQ:PL 0/0:34,2:36:18:0,18,832 0/1:35,4:39:35:35,0,777 0/0:36,1:37:64:0,64,1073 0/1:42,4:46:47:47,0,942 +chr20 45811788 rs8124995 G T 240.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.760;DB;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.4934;MLEAC=4;MLEAF=0.500;MQ=32.62;MQ0=0;MQRankSum=0.000;QD=14.16;ReadPosRankSum=-1.292;SB=-2.352e+01 GT:AD:DP:GQ:PL 0/1:6,3:9:98:98,0,144 1/1:3,5:8:15:188,15,0 0/0:2,0:2:6:0,6,83 0/0:1,1:2:3:0,3,42 +chr20 47274829 . C G 49.01 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.528;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.9286;MLEAC=4;MLEAF=0.500;MQ=25.57;MQ0=0;MQRankSum=0.496;QD=1.02;ReadPosRankSum=2.102;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:14:14,0,121 0/1:12,1:13:11:11,0,108 0/1:12,2:14:32:32,0,108 0/1:8,3:11:34:34,0,107 +chr20 47364300 . A T 81.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.054;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9815;MLEAC=2;MLEAF=0.250;MQ=34.07;MQ0=0;MQRankSum=-1.076;QD=2.27;ReadPosRankSum=-1.892;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,3:17:77:77,0,327 0/0:18,0:18:39:0,39,484 0/0:25,0:25:51:0,51,604 0/1:15,3:19:46:46,0,313 +chr20 47841660 rs11553387 G T 575.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.639;DB;DP=181;Dels=0.00;FS=6.089;HaplotypeScore=6.4041;MLEAC=1;MLEAF=0.125;MQ=27.93;MQ0=0;MQRankSum=1.063;QD=12.80;ReadPosRankSum=1.711;SB=-2.940e+02 GT:AD:DP:GQ:PL 0/1:21,24:45:99:612,0,522 0/0:51,0:51:99:0,120,1338 0/0:59,0:59:99:0,144,1545 0/0:26,0:26:63:0,63,690 +chr20 47846705 . G A 224.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.599;DP=42;Dels=0.00;FS=33.829;HaplotypeScore=1.8434;MLEAC=4;MLEAF=0.500;MQ=26.86;MQ0=0;MQRankSum=-0.875;QD=5.35;ReadPosRankSum=0.691;SB=7.39 GT:AD:DP:GQ:PL 0/1:4,4:9:14:51,0,14 0/1:8,3:11:62:62,0,80 0/1:5,2:7:47:47,0,114 0/1:9,6:15:46:107,0,46 +chr20 47851571 . A C 72.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.640;DP=111;Dels=0.01;FS=77.151;HaplotypeScore=1.9389;MLEAC=2;MLEAF=0.250;MQ=32.18;MQ0=0;MQRankSum=-3.024;QD=1.19;ReadPosRankSum=1.425;SB=-1.985e+00 GT:AD:DP:GQ:PL 0/1:22,6:28:99:102,0,668 0/0:20,3:23:29:0,29,576 0/1:30,3:33:11:11,0,859 0/0:24,1:26:41:0,41,715 +chr20 47879903 . GC G 406.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.212;DP=97;FS=28.108;HaplotypeScore=66.1059;MLEAC=3;MLEAF=0.375;MQ=27.26;MQ0=0;MQRankSum=-0.509;QD=5.57;ReadPosRankSum=-2.923;SB=-1.988e+00 GT:AD:DP:GQ:PL 0/0:20,1:17:30:0,30,415 0/1:25,0:20:4:4,0,563 0/1:19,6:23:99:258,0,491 0/1:14,6:13:99:195,0,101 +chr20 48127715 . A C 34.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.410;DP=74;Dels=0.04;FS=7.534;HaplotypeScore=7.0201;MLEAC=2;MLEAF=0.250;MQ=26.88;MQ0=0;MQRankSum=-2.075;QD=0.99;ReadPosRankSum=-0.957;SB=16.95 GT:AD:DP:GQ:PL 0/1:18,3:21:49:49,0,275 0/1:10,4:14:27:27,0,214 0/0:20,1:22:21:0,21,236 0/0:13,0:14:15:0,15,168 +chr20 48273299 rs4810968 T C 1474.99 . AC=8;AF=1.00;AN=8;DB;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=0.2892;MLEAC=8;MLEAF=1.00;MQ=34.92;MQ0=0;QD=33.52;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,10:11:30:391,30,0 1/1:1,9:10:24:314,24,0 1/1:1,10:11:30:387,30,0 1/1:0,11:11:33:422,33,0 +chr20 48522961 . G T 82.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.000;DP=108;Dels=0.02;FS=12.934;HaplotypeScore=7.9829;MLEAC=3;MLEAF=0.375;MQ=29.96;MQ0=0;MQRankSum=-0.902;QD=0.95;ReadPosRankSum=-1.703;SB=0.816 GT:AD:DP:GQ:PL 0/0:20,1:21:7:0,7,342 0/1:28,3:31:44:44,0,472 0/1:26,2:28:19:19,0,311 0/1:23,3:26:62:62,0,290 +chr20 49227602 . A G 78.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.235;DP=65;Dels=0.00;FS=2.410;HaplotypeScore=3.8554;MLEAC=3;MLEAF=0.375;MQ=27.81;MQ0=0;MQRankSum=-0.266;QD=1.48;ReadPosRankSum=-0.360;SB=-1.221e-02 GT:AD:DP:GQ:PL 0/1:17,1:18:3:3,0,220 0/0:12,0:12:12:0,12,129 0/1:18,2:20:41:41,0,181 0/1:11,4:15:75:75,0,75 +chr20 49575499 . A G 121.43 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.053;DP=64;Dels=0.05;FS=23.347;HaplotypeScore=5.4947;MLEAC=5;MLEAF=0.625;MQ=26.89;MQ0=0;MQRankSum=-0.053;QD=1.90;ReadPosRankSum=0.549;SB=0.780 GT:AD:DP:GQ:PL 1/1:8,2:10:6:60,6,0 0/1:18,2:21:32:32,0,207 0/1:17,4:21:56:56,0,193 0/1:8,1:9:17:17,0,19 +chr20 49620765 . G A 30.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.233;DP=60;Dels=0.02;FS=2.675;HaplotypeScore=8.9134;MLEAC=2;MLEAF=0.250;MQ=20.27;MQ0=0;MQRankSum=2.002;QD=0.88;ReadPosRankSum=1.211;SB=0.556 GT:AD:DP:GQ:PL 0/1:15,1:16:24:24,0,163 0/1:16,2:18:47:47,0,48 0/0:13,0:13:9:0,9,113 0/0:10,0:12:6:0,6,66 +chr20 49626572 . G T 164.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.782;DP=68;Dels=0.00;FS=27.617;HaplotypeScore=0.5824;MLEAC=2;MLEAF=0.250;MQ=38.09;MQ0=0;MQRankSum=-0.472;QD=5.14;ReadPosRankSum=-2.572;SB=0.101 GT:AD:DP:GQ:PL 0/0:17,0:17:36:0,36,466 0/1:9,3:12:65:65,0,342 0/0:19,0:19:48:0,48,603 0/1:15,5:20:99:141,0,419 +chr20 50238545 rs2235862 A G 544.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.264;DB;DP=86;Dels=0.00;FS=2.476;HaplotypeScore=1.1629;MLEAC=3;MLEAF=0.375;MQ=34.38;MQ0=0;MQRankSum=-0.807;QD=8.65;ReadPosRankSum=-0.360;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,5:21:99:126,0,371 0/0:23,0:23:69:0,69,867 0/1:15,8:24:99:253,0,335 0/1:11,7:18:99:209,0,192 +chr20 50273749 rs6021355 G A 208 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.344;DB;DP=35;Dels=0.00;FS=2.638;HaplotypeScore=1.3455;MLEAC=3;MLEAF=0.375;MQ=33.07;MQ0=0;MQRankSum=0.020;QD=8.00;ReadPosRankSum=0.829;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,3:6:15:94,0,15 0/0:9,0:9:15:0,15,206 0/1:10,5:15:99:126,0,322 0/1:4,1:5:31:31,0,112 +chr20 50313850 . A G 39.97 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.296;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.4664;MLEAC=2;MLEAF=0.250;MQ=33.79;MQ0=0;MQRankSum=-0.953;QD=0.71;ReadPosRankSum=2.789;SB=-1.153e-01 GT:AD:DP:GQ:PL 0/1:24,4:28:63:63,0,380 0/0:30,2:32:25:0,25,814 0/1:26,2:28:18:18,0,461 0/0:10,0:10:12:0,12,157 +chr20 51573915 rs2870039 C G 74.21 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.835;DB;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.2483;MLEAC=2;MLEAF=0.250;MQ=25.20;MQ0=0;MQRankSum=-0.536;QD=14.84;ReadPosRankSum=0.600;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:9:0,9,113 1/1:1,4:5:12:117,12,0 0/0:1,0:1:3:0,3,23 0/0:4,0:4:6:0,6,69 +chr20 52198464 . A G 96.54 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.812;DP=188;Dels=0.00;FS=61.419;HaplotypeScore=17.3635;MLEAC=3;MLEAF=0.375;MQ=30.26;MQ0=0;MQRankSum=0.126;QD=0.75;ReadPosRankSum=-0.558;SB=0.034 GT:AD:DP:GQ:PL 0/1:43,5:48:52:52,0,858 0/0:56,3:59:41:0,41,1130 0/1:42,4:46:9:9,0,953 0/1:30,4:35:78:78,0,499 +chr20 52645534 rs466264 T C 3372.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.397;DB;DP=96;Dels=0.01;FS=16.721;HaplotypeScore=2.2955;MLEAC=8;MLEAF=1.00;MQ=35.42;MQ0=0;MQRankSum=-0.013;QD=35.13;ReadPosRankSum=1.297;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:54:723,54,0 1/1:0,25:25:72:883,72,0 1/1:1,24:25:39:880,39,0 1/1:2,24:26:69:886,69,0 +chr20 54970758 . C G 246.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.646;DP=118;Dels=0.01;FS=23.584;HaplotypeScore=7.0220;MLEAC=4;MLEAF=0.500;MQ=35.05;MQ0=0;MQRankSum=-0.685;QD=2.09;ReadPosRankSum=-0.203;SB=-3.417e-02 GT:AD:DP:GQ:PL 0/1:20,2:22:21:21,0,519 0/1:25,5:30:99:112,0,461 0/1:32,4:36:36:36,0,670 0/1:24,5:29:99:120,0,416 +chr20 55012101 . G C 187.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.772;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.3613;MLEAC=3;MLEAF=0.375;MQ=28.21;MQ0=0;MQRankSum=0.548;QD=2.93;ReadPosRankSum=2.036;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:24:0,24,258 0/1:22,2:24:25:25,0,262 0/1:17,3:20:56:56,0,284 0/1:13,7:20:99:150,0,282 +chr20 55276679 rs6025087 T C 379.33 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.100;DB;DP=16;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=31.85;MQ0=0;MQRankSum=2.100;QD=23.71;ReadPosRankSum=1.187;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,6:7:18:228,18,0 1/1:3,3:6:6:76,6,0 1/1:0,1:1:3:44,3,0 1/1:0,2:2:6:69,6,0 +chr20 56090807 rs6025601 A G 1470.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.701;DB;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=1.8125;MLEAC=3;MLEAF=0.375;MQ=38.38;MQ0=0;MQRankSum=-3.582;QD=7.11;ReadPosRankSum=2.911;SB=-6.090e+02 GT:AD:DP:GQ:PL 0/0:77,0:77:99:0,232,3018 0/1:50,14:64:99:300,0,1628 0/1:53,26:79:99:710,0,1706 0/1:46,18:64:99:504,0,1277 +chr20 57016174 . A T 40.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.122;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=18.2277;MLEAC=2;MLEAF=0.250;MQ=23.50;MQ0=0;MQRankSum=0.852;QD=0.93;ReadPosRankSum=1.176;SB=23.40 GT:AD:DP:GQ:PL 0/1:12,2:15:43:51,0,43 0/1:11,1:15:13:13,0,49 0/1:12,1:13:18:18,0,85 0/0:5,0:6:6:0,6,63 +chr20 57287464 . C T 50 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.287;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3579;MLEAC=1;MLEAF=0.125;MQ=31.79;MQ0=0;MQRankSum=-2.950;QD=1.28;ReadPosRankSum=0.616;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:33,6:39:86:86,0,906 0/0:33,1:35:37:0,37,683 0/0:33,2:35:57:0,57,965 0/0:23,1:24:21:0,21,523 +chr20 57430154 . C A 232.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.060;DP=123;Dels=0.00;FS=25.761;HaplotypeScore=3.4464;MLEAC=4;MLEAF=0.500;MQ=32.84;MQ0=0;MQRankSum=-1.533;QD=1.89;ReadPosRankSum=1.663;SB=-1.441e+00 GT:AD:DP:GQ:PL 0/1:20,4:24:68:68,0,470 0/1:29,3:32:8:8,0,623 0/1:36,3:39:6:6,0,783 0/1:20,8:28:99:191,0,418 +chr20 57567047 . G C 40.40 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.223;DP=159;Dels=0.00;FS=36.932;HaplotypeScore=1.6380;MLEAC=2;MLEAF=0.250;MQ=38.51;MQ0=0;MQRankSum=-1.614;QD=0.59;ReadPosRankSum=-1.100;SB=-2.772e+00 GT:AD:DP:GQ:PL 0/0:38,3:41:1:0,1,1109 0/0:47,2:49:48:0,48,1374 0/1:42,5:47:41:41,0,1352 0/1:19,3:22:39:39,0,699 +chr20 57570238 rs448943 A G 91.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.920;DB;DP=14;Dels=0.00;FS=12.175;HaplotypeScore=1.3920;MLEAC=4;MLEAF=1.00;MQ=18.84;MQ0=0;MQRankSum=1.920;QD=10.14;ReadPosRankSum=1.920;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:43,3,0 ./. ./. 1/1:4,2:6:6:82,6,0 +chr20 57766530 . C G 33.01 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.585;DP=131;Dels=0.01;FS=48.648;HaplotypeScore=15.0494;MLEAC=2;MLEAF=0.250;MQ=30.56;MQ0=0;MQRankSum=-1.711;QD=0.55;ReadPosRankSum=0.612;SB=0.783 GT:AD:DP:GQ:PL 0/0:31,1:32:34:0,34,691 0/1:33,5:38:59:59,0,504 0/0:37,1:38:53:0,53,839 0/1:20,2:22:15:15,0,391 +chr20 57767027 . A C 47.32 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.061;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=1.9253;MLEAC=5;MLEAF=0.625;MQ=19.07;MQ0=0;MQRankSum=1.637;QD=2.49;ReadPosRankSum=-0.546;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:22:23,0,22 1/1:5,1:6:3:32,3,0 0/0:5,1:6:3:0,3,26 1/1:4,1:5:3:34,3,0 +chr20 57767838 . G T 30.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.164;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.4967;MLEAC=3;MLEAF=0.375;MQ=27.20;MQ0=0;MQRankSum=0.215;QD=0.49;ReadPosRankSum=-1.845;SB=-3.124e-02 GT:AD:DP:GQ:PL 0/1:19,3:22:26:26,0,300 0/1:16,1:18:6:6,0,177 0/0:22,0:22:24:0,24,263 0/1:19,3:22:40:40,0,367 +chr20 57876792 . T G 48.76 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.007;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7213;MLEAC=4;MLEAF=0.500;MQ=31.45;MQ0=0;MQRankSum=-0.852;QD=0.60;ReadPosRankSum=-0.188;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,3:24:23:23,0,326 0/1:15,1:16:14:14,0,133 0/1:24,2:26:29:29,0,348 0/1:13,2:15:25:25,0,263 +chr20 57923926 rs6064765 T A 78.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DB;DP=13;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=16.67;MQ0=0;MQRankSum=1.231;QD=13.04;ReadPosRankSum=1.231;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:36,3,0 ./. ./. 1/1:2,2:4:6:76,6,0 +chr20 58415449 . A T 66.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.739;DP=121;Dels=0.00;FS=19.865;HaplotypeScore=1.4571;MLEAC=2;MLEAF=0.250;MQ=33.79;MQ0=0;MQRankSum=-1.129;QD=1.36;ReadPosRankSum=1.064;SB=-1.881e+00 GT:AD:DP:GQ:PL 0/1:31,5:36:78:78,0,839 0/0:39,0:40:87:0,87,1053 0/0:30,2:32:14:0,14,895 0/1:11,2:13:30:30,0,276 +chr20 58440977 . T C 203.05 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.836;DP=41;Dels=0.02;FS=3.468;HaplotypeScore=5.6805;MLEAC=4;MLEAF=0.667;MQ=21.65;MQ0=0;MQRankSum=0.228;QD=5.21;ReadPosRankSum=0.456;SB=30.27 GT:AD:DP:GQ:PL 0/1:9,4:13:17:106,0,17 0/1:6,4:11:20:85,0,20 0/1:12,2:14:34:50,0,34 ./. +chr20 58445054 . T A 31.20 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.127;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=5.5585;MLEAC=4;MLEAF=0.500;MQ=26.30;MQ0=0;MQRankSum=-1.211;QD=0.73;ReadPosRankSum=1.319;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:11:11,0,190 0/1:6,2:8:25:38,0,25 0/1:11,2:13:1:1,0,182 0/1:5,1:6:21:21,0,67 +chr20 58452996 . A C 225.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.706;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=9.6930;MLEAC=4;MLEAF=0.500;MQ=22.01;MQ0=0;MQRankSum=-0.285;QD=6.10;ReadPosRankSum=0.943;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:28:28,0,39 0/1:5,6:12:8:101,0,8 0/1:7,6:14:5:120,0,5 0/1:2,1:3:18:18,0,33 +chr20 58455318 . A C 93.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.332;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=4.3833;MLEAC=2;MLEAF=0.250;MQ=30.04;MQ0=0;MQRankSum=-0.405;QD=3.47;ReadPosRankSum=1.143;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:99:104,0,147 0/1:10,2:12:29:29,0,98 0/0:10,0:10:6:0,6,60 0/0:2,0:2:3:0,3,25 +chr20 58559724 . A T 114.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.201;DP=194;Dels=0.02;FS=27.081;HaplotypeScore=5.0171;MLEAC=2;MLEAF=0.250;MQ=32.23;MQ0=0;MQRankSum=-0.870;QD=1.59;ReadPosRankSum=0.370;SB=0.709 GT:AD:DP:GQ:PL 0/1:45,6:52:79:79,0,624 0/0:57,3:60:21:0,21,989 0/0:57,2:60:26:0,26,962 0/1:15,3:18:74:77,0,74 +chr20 58883600 . G C 44.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.580;DP=67;Dels=0.03;FS=7.751;HaplotypeScore=12.4254;MLEAC=2;MLEAF=0.250;MQ=20.84;MQ0=0;MQRankSum=1.221;QD=0.86;ReadPosRankSum=-1.181;SB=29.17 GT:AD:DP:GQ:PL 0/1:11,2:14:33:33,0,66 0/1:20,2:22:38:38,0,40 0/0:13,0:14:15:0,15,161 0/1:10,2:15:15:15,0,68 +chr20 58894327 rs6100858 C T 104.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.932;DB;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.6717;MLEAC=1;MLEAF=0.125;MQ=31.73;MQ0=0;MQRankSum=0.218;QD=5.83;ReadPosRankSum=0.113;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,5:18:99:141,0,257 0/0:34,0:34:75:0,75,935 0/0:21,0:21:57:0,57,675 0/0:22,0:22:57:0,57,661 +chr20 59886152 rs6028103 C T 52.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=19.77;MQ0=0;MQRankSum=1.026;QD=10.40;ReadPosRankSum=1.026;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:2:3:44,3,0 1/1:2,1:3:3:41,3,0 +chr20 60509249 . C G 101.88 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.078;DP=57;Dels=0.00;FS=40.161;HaplotypeScore=6.6094;MLEAC=3;MLEAF=0.375;MQ=28.25;MQ0=0;MQRankSum=-0.992;QD=2.43;ReadPosRankSum=1.768;SB=1.38 GT:AD:DP:GQ:PL 0/1:13,4:17:21:21,0,165 0/1:10,5:15:99:101,0,226 0/0:15,0:15:27:0,27,349 0/1:9,1:10:23:23,0,85 +chr20 60624138 . G A 50.26 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.922;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.6966;MLEAC=6;MLEAF=1.00;MQ=14.09;MQ0=0;MQRankSum=2.017;QD=5.58;ReadPosRankSum=0.922;SB=-2.724e+01 GT:AD:DP:GQ:PL ./. 1/1:3,1:4:3:22,3,0 1/1:1,2:3:3:34,3,0 1/1:1,1:2:3:29,3,0 +chr20 60733639 rs6142963 A G 323.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.090;DB;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=1.3405;MLEAC=3;MLEAF=0.375;MQ=37.59;MQ0=0;MQRankSum=-1.090;QD=12.46;ReadPosRankSum=0.778;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:92:92,0,262 0/0:3,0:3:6:0,6,66 0/1:5,5:10:99:161,0,147 0/1:1,3:4:31:113,0,31 +chr20 60740587 rs60342665 CGTGCTGGGCTCGA C 1528.15 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.297;DB;DP=31;FS=5.229;HaplotypeScore=29.5370;MLEAC=3;MLEAF=0.375;MQ=26.35;MQ0=0;MQRankSum=-0.895;QD=58.77;ReadPosRankSum=2.063;SB=0.657 GT:AD:DP:GQ:PL 0/1:5,2:6:93:452,0,93 0/1:7,3:7:38:518,0,38 0/1:4,3:6:99:609,0,142 0/0:5,0:3:5:0,5,181 +chr20 60747573 rs6121939 G C 141.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.514;DB;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=33.17;MQ0=0;MQRankSum=-0.514;QD=4.88;ReadPosRankSum=-1.059;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,2:7:54:54,0,92 0/1:6,2:8:57:57,0,173 0/1:5,2:7:56:56,0,152 0/1:6,1:7:17:17,0,104 +chr20 60881330 rs2427273 G A 3406.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=4.945;DB;DP=131;Dels=0.00;FS=2.988;HaplotypeScore=7.0508;MLEAC=7;MLEAF=0.875;MQ=31.92;MQ0=0;MQRankSum=-0.285;QD=26.00;ReadPosRankSum=3.208;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:5,26:31:49:929,49,0 0/1:6,21:27:8:657,0,8 1/1:8,41:49:38:1331,38,0 1/1:6,18:24:2:489,2,0 +chr20 60887008 . G C 89.37 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.298;DP=102;Dels=0.00;FS=65.851;HaplotypeScore=7.0141;MLEAC=4;MLEAF=0.500;MQ=36.21;MQ0=0;MQRankSum=-3.896;QD=0.88;ReadPosRankSum=-0.065;SB=-1.798e+00 GT:AD:DP:GQ:PL 0/1:19,2:21:5:5,0,567 0/1:24,4:28:7:7,0,726 0/1:23,5:28:50:50,0,639 0/1:20,4:25:68:68,0,548 +chr20 60902468 . G T 60.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.116;DP=59;Dels=0.02;FS=8.352;HaplotypeScore=10.1182;MLEAC=2;MLEAF=0.250;MQ=24.23;MQ0=0;MQRankSum=0.109;QD=2.53;ReadPosRankSum=-0.066;SB=0.207 GT:AD:DP:GQ:PL 0/1:9,2:11:46:46,0,74 0/0:20,0:20:21:0,21,237 0/1:10,3:13:45:56,0,45 0/0:12,1:14:18:0,18,175 +chr20 60963151 . G T 97.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.874;DP=90;Dels=0.03;FS=0.000;HaplotypeScore=5.9453;MLEAC=3;MLEAF=0.375;MQ=26.80;MQ0=0;MQRankSum=-0.704;QD=1.44;ReadPosRankSum=3.065;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:21,1:22:11:0,11,379 0/1:20,4:24:81:81,0,203 0/1:19,2:21:9:9,0,361 0/1:17,3:20:50:50,0,209 +chr20 61386096 . C A 257.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.402;DP=160;Dels=0.01;FS=55.091;HaplotypeScore=4.3934;MLEAC=3;MLEAF=0.375;MQ=35.48;MQ0=0;MQRankSum=-2.855;QD=2.18;ReadPosRankSum=-0.166;SB=1.06 GT:AD:DP:GQ:PL 0/1:27,6:33:94:94,0,690 0/0:40,2:42:43:0,43,1144 0/1:40,7:47:99:143,0,783 0/1:32,5:37:64:64,0,898 +chr20 61441035 rs2277772 G A 1190.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.414;DB;DP=79;Dels=0.00;FS=1.527;HaplotypeScore=0.9850;MLEAC=4;MLEAF=0.500;MQ=30.62;MQ0=0;MQRankSum=1.088;QD=18.90;ReadPosRankSum=2.457;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/0:16,0:16:42:0,42,489 1/1:3,19:22:57:682,57,0 0/1:10,10:20:99:328,0,160 0/1:12,9:21:99:229,0,164 +chr20 61467397 . A C 232.83 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.659;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=0.9572;MLEAC=4;MLEAF=0.500;MQ=24.33;MQ0=0;MQRankSum=2.540;QD=5.41;ReadPosRankSum=0.423;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,1:11:19:19,0,38 0/1:6,4:10:30:94,0,30 0/1:11,2:13:15:46,0,15 0/1:4,4:8:12:116,0,12 +chr20 61597127 . C G 72.42 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.683;DP=58;Dels=0.02;FS=5.775;HaplotypeScore=13.7348;MLEAC=5;MLEAF=0.625;MQ=21.46;MQ0=0;MQRankSum=0.223;QD=1.25;ReadPosRankSum=2.737;SB=6.158e-03 GT:AD:DP:GQ:PL 0/1:14,4:18:27:27,0,50 0/1:14,1:16:19:19,0,20 0/1:7,3:10:23:23,0,41 1/1:9,4:13:6:47,6,0 +chr20 61598574 rs3746751 C T 151.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.089;DB;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=2.6733;MLEAC=4;MLEAF=0.500;MQ=25.68;MQ0=0;MQRankSum=1.779;QD=5.42;ReadPosRankSum=1.195;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:19:38,0,19 0/1:9,3:12:84:84,0,112 0/1:3,2:5:54:54,0,78 0/1:5,1:6:18:18,0,132 +chr20 61732486 rs6090237 C G 46.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.026;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=18.35;MQ0=0;MQRankSum=1.026;QD=11.50;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:40,3,0 ./. 1/1:2,1:3:3:39,3,0 ./. +chr20 61869607 rs6010878 C A 98.30 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.638;DB;DP=14;Dels=0.00;FS=13.222;HaplotypeScore=0.8976;MLEAC=5;MLEAF=0.833;MQ=22.76;MQ0=0;MQRankSum=2.017;QD=8.19;ReadPosRankSum=-0.421;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:32,3,0 0/1:4,1:5:24:36,0,24 ./. 1/1:2,2:4:6:69,6,0 +chr20 61939482 . G A 46.31 . AC=5;AF=0.625;AN=8;BaseQRankSum=-2.823;DP=48;Dels=0.00;FS=5.093;HaplotypeScore=4.8970;MLEAC=4;MLEAF=0.500;MQ=17.04;MQ0=0;MQRankSum=1.634;QD=1.36;ReadPosRankSum=-0.488;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:10,1:11:3:38,3,0 1/1:9,2:11:3:23,3,0 0/0:13,1:14:9:0,9,87 0/1:10,2:12:17:29,0,17 +chr20 61945237 rs41283002 G A 63.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.231;DB;DP=79;Dels=0.01;FS=2.389;HaplotypeScore=1.5920;MLEAC=1;MLEAF=0.125;MQ=32.80;MQ0=0;MQRankSum=-1.522;QD=5.33;ReadPosRankSum=-0.463;SB=-4.691e+01 GT:AD:DP:GQ:PL 0/0:18,0:18:54:0,54,699 0/1:7,4:11:99:100,0,123 0/0:27,0:27:57:0,57,712 0/0:22,0:22:54:0,54,644 +chr20 62059884 . A T 39.26 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.026;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.6502;MLEAC=4;MLEAF=0.667;MQ=26.73;MQ0=0;MQRankSum=1.026;QD=9.82;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:36,3,0 ./. 1/1:2,1:3:3:41,3,0 0/0:2,0:2:3:0,3,26 +chr20 62187777 . A C 227.93 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.975;DP=166;Dels=0.00;FS=87.723;HaplotypeScore=21.2598;MLEAC=3;MLEAF=0.375;MQ=28.98;MQ0=0;MQRankSum=-0.245;QD=1.90;ReadPosRankSum=-0.770;SB=0.642 GT:AD:DP:GQ:PL 0/1:32,3:35:45:45,0,569 0/0:42,4:46:27:0,27,1009 0/1:39,3:42:17:17,0,816 0/1:32,11:43:99:209,0,448 +chr20 62187785 . C A 102.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.491;DP=173;Dels=0.00;FS=56.942;HaplotypeScore=22.2456;MLEAC=2;MLEAF=0.250;MQ=30.13;MQ0=0;MQRankSum=-0.653;QD=1.14;ReadPosRankSum=-0.151;SB=1.35 GT:AD:DP:GQ:PL 0/1:37,5:42:59:59,0,855 0/1:42,6:48:85:85,0,744 0/0:42,1:43:54:0,54,800 0/0:39,1:40:50:0,50,840 +chr20 62192263 . T A 44.10 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.939;DP=104;Dels=0.00;FS=47.636;HaplotypeScore=16.3612;MLEAC=1;MLEAF=0.125;MQ=25.61;MQ0=0;MQRankSum=-2.136;QD=1.76;ReadPosRankSum=0.843;SB=-6.351e+00 GT:AD:DP:GQ:PL 0/0:21,5:26:14:0,14,492 0/1:21,4:25:80:80,0,258 0/0:27,1:28:17:0,17,458 0/0:22,3:25:16:0,16,456 +chr20 62198581 . C G 69.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.175;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=7.5357;MLEAC=3;MLEAF=0.375;MQ=23.29;MQ0=0;MQRankSum=0.775;QD=2.24;ReadPosRankSum=0.125;SB=0.521 GT:AD:DP:GQ:PL 0/0:6,0:6:9:0,9,111 0/1:6,2:8:42:42,0,57 0/1:9,2:11:42:42,0,95 0/1:9,2:12:28:28,0,137 +chr20 62223313 . C A 35.38 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.849;DP=19;Dels=0.00;FS=9.874;HaplotypeScore=1.5823;MLEAC=2;MLEAF=0.250;MQ=26.26;MQ0=0;MQRankSum=-0.623;QD=3.54;ReadPosRankSum=1.189;SB=1.28 GT:AD:DP:GQ:PL 0/0:6,0:6:15:0,15,163 0/1:2,1:3:17:26,0,17 0/0:3,0:3:6:0,6,60 0/1:4,3:7:50:50,0,89 +chr20 62234273 rs766915 A G 2305.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=5.034;DB;DP=107;Dels=0.00;FS=43.607;HaplotypeScore=2.1519;MLEAC=6;MLEAF=0.750;MQ=29.89;MQ0=0;MQRankSum=5.073;QD=21.55;ReadPosRankSum=-0.356;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:4,14:18:42:476,42,0 0/1:14,18:32:72:587,0,72 1/1:8,25:33:57:882,57,0 0/1:9,15:24:40:407,0,40 +chr20 62321143 . G T 38.37 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.434;DP=35;Dels=0.00;FS=17.432;HaplotypeScore=1.2496;MLEAC=3;MLEAF=0.375;MQ=26.46;MQ0=0;MQRankSum=1.556;QD=1.37;ReadPosRankSum=0.092;SB=-1.322e+00 GT:AD:DP:GQ:PL 0/0:7,0:7:12:0,12,117 0/1:7,2:9:56:56,0,90 0/1:10,1:11:7:7,0,181 0/1:7,1:8:17:17,0,117 +chr20 62321474 . T A 51.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.719;DP=40;Dels=0.00;FS=26.113;HaplotypeScore=4.1221;MLEAC=3;MLEAF=0.375;MQ=27.39;MQ0=0;MQRankSum=-1.545;QD=1.56;ReadPosRankSum=-0.849;SB=2.88 GT:AD:DP:GQ:PL 0/1:7,2:9:12:12,0,83 0/1:7,1:8:15:15,0,95 0/1:11,5:16:67:67,0,142 0/0:6,0:7:18:0,18,212 +chr20 62329713 . C A 56.21 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.198;DP=21;Dels=0.05;FS=5.441;HaplotypeScore=3.2152;MLEAC=5;MLEAF=0.833;MQ=22.30;MQ0=0;MQRankSum=0.198;QD=4.32;ReadPosRankSum=0.922;SB=25.63 GT:AD:DP:GQ:PL 0/0:3,0:3:3:0,3,39 1/1:3,2:6:6:48,6,0 1/1:4,3:7:6:48,6,0 ./. +chr20 62333502 . G T 114.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.862;DP=116;Dels=0.00;FS=26.396;HaplotypeScore=2.1676;MLEAC=1;MLEAF=0.125;MQ=34.30;MQ0=0;MQRankSum=-1.290;QD=4.26;ReadPosRankSum=1.247;SB=-2.720e+00 GT:AD:DP:GQ:PL 0/0:23,1:24:31:0,31,681 0/0:25,1:26:29:0,29,618 0/0:37,2:39:34:0,34,1034 0/1:21,6:27:99:151,0,355 +chr20 62550652 . G A 134.95 . AC=5;AF=0.833;AN=6;BaseQRankSum=2.165;DP=23;Dels=0.04;FS=6.662;HaplotypeScore=2.8845;MLEAC=5;MLEAF=0.833;MQ=18.33;MQ0=0;MQRankSum=2.839;QD=6.75;ReadPosRankSum=-0.722;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:2,4:6:10:88,0,10 1/1:4,1:5:3:24,3,0 1/1:5,3:8:6:61,6,0 +chr20 62574986 . G C 209.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.773;DP=68;Dels=0.03;FS=10.013;HaplotypeScore=3.5154;MLEAC=3;MLEAF=0.375;MQ=30.40;MQ0=0;MQRankSum=0.797;QD=3.89;ReadPosRankSum=-2.242;SB=-9.792e-03 GT:AD:DP:GQ:PL 0/1:11,5:16:99:141,0,290 0/1:17,2:19:40:40,0,339 0/0:14,0:14:33:0,33,382 0/1:13,4:17:72:72,0,216 +chr20 62591333 . G C 676.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.123;DP=97;Dels=0.00;FS=9.787;HaplotypeScore=7.8408;MLEAC=4;MLEAF=0.500;MQ=28.40;MQ0=0;MQRankSum=-2.920;QD=6.98;ReadPosRankSum=3.313;SB=-7.801e+01 GT:AD:DP:GQ:PL 0/1:11,4:15:80:80,0,312 0/1:17,9:26:99:185,0,104 0/1:18,12:31:99:266,0,181 0/1:15,10:25:99:188,0,164 +chr20 62592663 . T G 69.28 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.100;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3911;MLEAC=2;MLEAF=0.250;MQ=32.32;MQ0=0;MQRankSum=-1.656;QD=2.39;ReadPosRankSum=0.823;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,4:17:95:95,0,249 0/0:16,1:17:10:0,10,331 0/0:27,2:29:24:0,24,592 0/1:11,1:12:15:15,0,184 +chr20 62595572 . T A 680.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.836;DP=128;Dels=0.01;FS=33.971;HaplotypeScore=10.4796;MLEAC=4;MLEAF=0.500;MQ=22.30;MQ0=0;MQRankSum=3.376;QD=5.32;ReadPosRankSum=4.308;SB=-2.748e+00 GT:AD:DP:GQ:PL 0/1:24,11:35:99:230,0,265 0/1:24,7:31:35:139,0,35 0/1:19,13:32:73:230,0,73 0/1:23,6:29:82:124,0,82 +chr20 62597844 rs139779787 G C 108.02 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.400;DB;DP=317;Dels=0.00;FS=0.580;HaplotypeScore=15.7259;MLEAC=1;MLEAF=0.125;MQ=33.54;MQ0=0;MQRankSum=-8.278;QD=1.50;ReadPosRankSum=-1.605;SB=-3.222e+01 GT:AD:DP:GQ:PL 0/1:54,18:72:99:144,0,1259 0/0:66,8:74:16:0,16,1701 0/0:77,11:88:29:0,29,1815 0/0:70,12:82:55:0,55,1521 +chr20 62599141 rs817331 C T 653.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.240;DB;DP=106;Dels=0.01;FS=2.614;HaplotypeScore=3.4587;MLEAC=3;MLEAF=0.375;MQ=34.76;MQ0=0;MQRankSum=-0.213;QD=8.83;ReadPosRankSum=1.584;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:19,6:25:99:158,0,555 0/0:32,0:32:78:0,78,930 0/1:19,13:33:99:400,0,530 0/1:10,5:15:99:139,0,272 +chr20 62838878 . T G 35.66 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.145;DP=105;Dels=0.01;FS=4.639;HaplotypeScore=6.8962;MLEAC=2;MLEAF=0.250;MQ=21.88;MQ0=0;MQRankSum=-1.447;QD=0.64;ReadPosRankSum=2.628;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,3:17:24:24,0,198 0/0:25,0:25:27:0,27,282 0/1:32,6:38:53:53,0,360 0/0:20,4:24:18:0,18,175 +chr20 62858859 . G T 34.05 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.262;DP=30;Dels=0.03;FS=2.754;HaplotypeScore=3.9391;MLEAC=2;MLEAF=0.250;MQ=18.94;MQ0=0;MQRankSum=0.786;QD=1.62;ReadPosRankSum=-1.309;SB=-1.507e+00 GT:AD:DP:GQ:PL 0/0:4,1:5:6:0,6,66 0/1:10,3:14:14:49,0,14 0/0:4,0:4:6:0,6,63 0/1:5,1:6:22:25,0,22 +chr20 62863696 . A C 60.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.912;DP=60;Dels=0.03;FS=13.950;HaplotypeScore=9.7198;MLEAC=3;MLEAF=0.375;MQ=24.15;MQ0=0;MQRankSum=-0.762;QD=1.32;ReadPosRankSum=-0.072;SB=-9.742e-03 GT:AD:DP:GQ:PL 0/1:6,3:9:25:40,0,25 0/1:17,3:20:30:30,0,218 0/0:14,0:14:27:0,27,281 0/1:9,4:15:34:34,0,122 +chr20 62896808 . T G 35.41 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.385;DP=87;Dels=0.02;FS=0.000;HaplotypeScore=11.5122;MLEAC=3;MLEAF=0.375;MQ=23.03;MQ0=0;MQRankSum=-1.594;QD=0.57;ReadPosRankSum=0.524;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,1:17:16:16,0,85 0/1:20,5:25:15:15,0,277 0/0:24,1:25:13:0,13,353 0/1:14,3:18:47:47,0,154 +chr21 9909176 rs4061663 C A 358.50 . AC=6;AF=0.750;AN=8;BaseQRankSum=4.970;DB;DP=88;Dels=0.00;FS=7.651;HaplotypeScore=3.8304;MLEAC=6;MLEAF=0.750;MQ=12.49;MQ0=0;MQRankSum=0.514;QD=4.07;ReadPosRankSum=0.307;SB=-6.874e+01 GT:AD:DP:GQ:PL 0/1:14,7:21:42:95,0,42 0/1:6,16:22:19:59,0,19 1/1:4,24:28:12:118,12,0 1/1:6,11:17:12:132,12,0 +chr21 9912407 . T G 36.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.921;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.9601;MLEAC=2;MLEAF=0.250;MQ=20.38;MQ0=0;MQRankSum=1.059;QD=0.87;ReadPosRankSum=1.673;SB=-2.894e+00 GT:AD:DP:GQ:PL 0/1:15,3:18:55:67,0,55 0/1:23,1:24:7:7,0,228 0/0:21,2:23:1:0,1,312 0/0:10,0:10:9:0,9,89 +chr21 10862853 rs1961808 G A 173.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.143;DB;DP=202;Dels=0.02;FS=58.968;HaplotypeScore=7.7141;MLEAC=2;MLEAF=0.250;MQ=9.32;MQ0=0;MQRankSum=-2.250;QD=1.55;ReadPosRankSum=-0.281;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/0:30,16:46:3:0,3,29 0/0:22,19:41:6:0,6,70 0/1:31,24:55:74:74,0,114 0/1:32,23:55:36:139,0,36 +chr21 10942783 . T G 255.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.828;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=2.1331;MLEAC=4;MLEAF=0.500;MQ=16.30;MQ0=0;MQRankSum=5.057;QD=0.79;ReadPosRankSum=-0.264;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:77,4:82:54:66,0,54 0/1:99,7:106:97:97,0,115 0/1:92,8:100:90:90,0,205 0/1:34,2:37:45:45,0,47 +chr21 10998086 rs461516 T A 58.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.589;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=11.63;MQ0=0;MQRankSum=1.589;QD=7.28;ReadPosRankSum=1.067;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:3:36,3,0 ./. 1/1:1,3:4:6:56,6,0 ./. +chr21 11130245 rs459176 A C 152.85 . AC=6;AF=1.00;AN=6;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=26.06;MQ0=0;QD=21.84;SB=-3.272e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:90,9,0 1/1:0,2:2:6:64,6,0 1/1:0,2:2:3:35,3,0 ./. +chr21 11181099 . T C 258.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.996;DP=206;Dels=0.00;FS=22.087;HaplotypeScore=29.7641;MLEAC=4;MLEAF=0.500;MQ=17.66;MQ0=0;MQRankSum=3.651;QD=1.26;ReadPosRankSum=-0.707;SB=3.05 GT:AD:DP:GQ:PL 0/1:42,8:52:86:86,0,139 0/1:50,4:56:27:27,0,107 0/1:47,6:56:92:105,0,92 0/1:35,4:41:19:83,0,19 +chr21 11181697 rs10439873 G T 69.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=6.131;DB;DP=351;Dels=0.00;FS=20.549;HaplotypeScore=14.4019;MLEAC=2;MLEAF=0.250;MQ=15.57;MQ0=0;MQRankSum=-4.191;QD=0.41;ReadPosRankSum=0.664;SB=-3.500e+00 GT:AD:DP:GQ:PL 0/1:73,16:89:71:71,0,522 0/0:75,14:89:23:0,23,497 0/0:71,22:93:48:0,48,524 0/1:63,16:79:40:40,0,415 +chr21 14760037 rs75136950 G A 59.24 . AC=2;AF=0.333;AN=6;BaseQRankSum=0.233;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.6293;MLEAC=2;MLEAF=0.333;MQ=20.17;MQ0=0;MQRankSum=0.767;QD=3.12;ReadPosRankSum=-0.233;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:6:0,6,56 0/1:5,3:8:38:55,0,38 0/1:8,3:11:42:42,0,99 ./. +chr21 15011705 rs117865838 A G 30.77 . AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.04;FS=12.704;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.45;MQ0=0;QD=3.85;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:2,6:8:6:62,6,0 ./. +chr21 15309613 . C G 38.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.421;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=2.6005;MLEAC=3;MLEAF=0.375;MQ=14.47;MQ0=0;MQRankSum=0.235;QD=0.79;ReadPosRankSum=1.816;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:11,2:13:3:30,3,0 0/0:18,0:18:9:0,9,96 0/1:14,2:16:17:17,0,35 0/1:14,5:19:35:35,0,52 +chr21 15451051 . A C 84.55 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.736;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=16.55;MQ0=0;MQRankSum=0.736;QD=12.08;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:22,3,0 1/1:0,2:2:6:49,6,0 1/1:1,1:2:3:25,3,0 1/1:1,1:2:3:25,3,0 +chr21 15538794 . A C 296.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.082;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1733;MLEAC=4;MLEAF=0.500;MQ=32.35;MQ0=0;MQRankSum=-2.592;QD=2.17;ReadPosRankSum=3.682;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:39,7:46:99:155,0,562 0/1:38,4:42:67:67,0,468 0/1:32,5:37:99:103,0,560 0/1:11,1:12:14:14,0,135 +chr21 15956177 . G T 66.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.098;DP=105;Dels=0.02;FS=0.000;HaplotypeScore=4.1316;MLEAC=3;MLEAF=0.375;MQ=33.39;MQ0=0;MQRankSum=-2.514;QD=0.80;ReadPosRankSum=0.833;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,0:20:33:0,33,416 0/1:33,5:38:46:46,0,590 0/1:28,3:32:28:28,0,467 0/1:11,2:13:36:36,0,128 +chr21 17447161 . C T 33.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.664;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=0.9458;MLEAC=1;MLEAF=0.125;MQ=32.84;MQ0=0;MQRankSum=-0.057;QD=3.30;ReadPosRankSum=-1.097;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:27,1:28:21:0,21,590 0/0:20,1:21:22:0,22,609 0/0:36,0:36:90:0,90,1024 0/1:7,3:10:69:69,0,129 +chr21 19629095 . G C 34.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.248;DP=124;Dels=0.00;FS=68.538;HaplotypeScore=7.3250;MLEAC=3;MLEAF=0.375;MQ=31.41;MQ0=0;MQRankSum=-3.550;QD=0.38;ReadPosRankSum=-1.461;SB=1.85 GT:AD:DP:GQ:PL 0/1:28,4:32:36:36,0,734 0/0:31,0:31:66:0,66,796 0/1:33,3:36:26:26,0,686 0/1:22,3:25:16:16,0,485 +chr21 22782661 . T A 79.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.750;DP=210;Dels=0.00;FS=114.889;HaplotypeScore=1.0767;MLEAC=1;MLEAF=0.125;MQ=37.15;MQ0=0;MQRankSum=-3.300;QD=1.18;ReadPosRankSum=0.179;SB=-6.406e+00 GT:AD:DP:GQ:PL 0/0:56,2:58:75:0,75,1550 0/1:58,10:68:99:116,0,1824 0/0:56,2:58:80:0,80,1723 0/0:24,1:25:26:0,26,647 +chr21 22839194 rs762441 G C 154.35 . AC=6;AF=1.00;AN=6;BaseQRankSum=2.219;DB;DP=12;Dels=0.00;FS=13.222;HaplotypeScore=0.1928;MLEAC=6;MLEAF=1.00;MQ=22.68;MQ0=0;MQRankSum=2.219;QD=14.03;ReadPosRankSum=-2.219;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:9:114,9,0 1/1:4,1:5:3:37,3,0 1/1:1,1:2:3:39,3,0 ./. +chr21 24474566 . TA T 106.89 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.754;DP=46;FS=0.000;HaplotypeScore=21.9788;MLEAC=4;MLEAF=0.500;MQ=20.26;MQ0=0;MQRankSum=1.357;QD=2.81;ReadPosRankSum=-0.553;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:10,5:10:84:84,0,118 0/0:7,0:7:8:0,8,74 0/1:9,3:10:59:59,0,119 1/1:7,1:2:3:16,3,0 +chr21 24474978 . G C 85.23 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.836;DP=78;Dels=0.00;FS=10.365;HaplotypeScore=5.2709;MLEAC=3;MLEAF=0.375;MQ=20.73;MQ0=0;MQRankSum=1.485;QD=1.50;ReadPosRankSum=0.325;SB=0.346 GT:AD:DP:GQ:PL 1/1:17,2:19:3:31,3,0 0/1:21,3:24:41:41,0,133 0/0:21,0:21:12:0,12,127 0/1:10,4:14:57:57,0,68 +chr21 24763160 rs57546904 G A 67.73 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.955;DB;DP=40;Dels=0.00;FS=1.921;HaplotypeScore=0.6647;MLEAC=3;MLEAF=0.500;MQ=14.17;MQ0=0;MQRankSum=1.820;QD=2.71;ReadPosRankSum=0.991;SB=5.48 GT:AD:DP:GQ:PL 0/0:10,0:10:3:0,3,22 0/1:8,7:15:27:27,0,53 1/1:5,5:10:6:80,6,0 ./. +chr21 27130283 . A T 136.68 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.164;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.4269;MLEAC=4;MLEAF=0.500;MQ=28.51;MQ0=0;MQRankSum=-0.694;QD=3.42;ReadPosRankSum=1.021;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,3:10:25:58,0,25 0/1:8,3:11:68:75,0,68 0/1:14,2:16:17:17,0,42 0/1:2,1:3:22:29,0,22 +chr21 30250382 rs2738960 T C 402.74 . AC=6;AF=1.00;AN=6;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=39.05;MQ0=0;QD=36.61;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:9:117,9,0 1/1:0,5:5:15:206,15,0 1/1:0,3:3:9:117,9,0 ./. +chr21 30324644 rs2832145 T G 778.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=4.725;DB;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=35.40;MQ0=0;MQRankSum=0.607;QD=17.31;ReadPosRankSum=0.447;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:57:0,57,687 0/1:7,8:15:99:280,0,123 0/1:13,12:25:99:402,0,361 0/1:1,4:5:12:140,0,12 +chr21 30338851 . T G 247.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.247;DP=161;Dels=0.01;FS=55.180;HaplotypeScore=7.1765;MLEAC=3;MLEAF=0.375;MQ=31.88;MQ0=0;MQRankSum=-1.479;QD=1.81;ReadPosRankSum=1.756;SB=0.274 GT:AD:DP:GQ:PL 0/1:42,4:47:25:25,0,728 0/1:39,10:50:99:196,0,647 0/1:33,7:40:70:70,0,453 0/0:23,0:23:27:0,27,319 +chr21 30442475 rs2183569 T C 857.17 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.677;DB;DP=34;Dels=0.00;FS=51.993;HaplotypeScore=0.6173;MLEAC=8;MLEAF=1.00;MQ=29.56;MQ0=0;MQRankSum=3.985;QD=25.21;ReadPosRankSum=0.418;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,7:8:21:271,21,0 1/1:2,8:10:24:310,24,0 1/1:1,8:9:18:222,18,0 1/1:4,3:7:9:93,9,0 +chr21 30714598 rs411697 G A 104.72 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.075;DB;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=36.50;MQ0=0;MQRankSum=-2.146;QD=3.38;ReadPosRankSum=0.188;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:12,0:12:30:0,30,412 0/1:8,4:12:99:104,0,264 0/1:14,2:16:8:8,0,304 0/1:2,1:3:35:35,0,38 +chr21 31973685 rs1961491 C T 1306.63 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.354;DB;DP=74;Dels=0.00;FS=14.627;HaplotypeScore=1.6177;MLEAC=7;MLEAF=0.875;MQ=28.12;MQ0=0;MQRankSum=0.192;QD=17.66;ReadPosRankSum=0.637;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,16:19:48:532,48,0 0/1:13,9:22:99:170,0,182 1/1:8,15:24:42:484,42,0 1/1:3,6:9:15:165,15,0 +chr21 32114480 rs112636474 G C 52.16 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.958;DB;DP=370;Dels=0.01;FS=17.675;HaplotypeScore=3.0720;MLEAC=2;MLEAF=0.250;MQ=6.01;MQ0=0;MQRankSum=-4.564;QD=0.57;ReadPosRankSum=4.025;SB=-2.020e+01 GT:AD:DP:GQ:PL 0/0:86,6:92:9:0,9,93 0/0:85,10:98:6:0,6,67 1/1:79,13:92:9:94,9,0 0/0:76,10:86:6:0,6,55 +chr21 32582484 . G C 134.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.837;DP=126;Dels=0.01;FS=64.537;HaplotypeScore=10.5269;MLEAC=4;MLEAF=0.500;MQ=32.30;MQ0=0;MQRankSum=0.087;QD=1.07;ReadPosRankSum=0.079;SB=-2.921e-01 GT:AD:DP:GQ:PL 0/1:27,4:31:63:63,0,782 0/1:26,3:29:33:33,0,586 0/1:33,4:37:11:11,0,652 0/1:23,5:28:70:70,0,640 +chr21 33296776 . T C 303.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.668;DP=122;Dels=0.00;FS=17.216;HaplotypeScore=1.2836;MLEAC=3;MLEAF=0.375;MQ=34.61;MQ0=0;MQRankSum=-4.328;QD=3.37;ReadPosRankSum=1.957;SB=-4.395e-01 GT:AD:DP:GQ:PL 0/0:29,3:32:5:0,5,744 0/1:16,10:26:99:229,0,438 0/1:36,5:41:60:60,0,858 0/1:19,4:23:56:56,0,338 +chr21 33756582 . C A 152.67 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.689;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=1.6674;MLEAC=2;MLEAF=0.250;MQ=33.68;MQ0=0;MQRankSum=0.300;QD=1.91;ReadPosRankSum=-0.056;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:47,1:48:65:0,65,1070 0/1:37,3:40:21:21,0,871 0/0:49,2:51:34:0,34,1126 0/1:32,8:40:99:173,0,627 +chr21 33887131 rs3177478 G A 860.57 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.634;DB;DP=110;Dels=0.01;FS=0.832;HaplotypeScore=7.7997;MLEAC=4;MLEAF=0.500;MQ=30.95;MQ0=0;MQRankSum=-1.024;QD=11.47;ReadPosRankSum=0.569;SB=-3.568e+02 GT:AD:DP:GQ:PL 1/1:5,12:17:33:392,33,0 0/0:35,0:35:75:0,75,874 0/1:19,7:27:99:178,0,464 0/1:17,13:30:99:339,0,309 +chr21 33887209 . G C 325.10 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.830;DP=154;Dels=0.00;FS=72.545;HaplotypeScore=1.5310;MLEAC=4;MLEAF=0.500;MQ=30.11;MQ0=0;MQRankSum=-1.824;QD=2.11;ReadPosRankSum=0.771;SB=-1.527e+00 GT:AD:DP:GQ:PL 0/1:37,7:44:74:74,0,823 0/1:28,7:35:99:142,0,469 0/1:35,3:38:3:3,0,767 0/1:30,7:37:99:147,0,504 +chr21 33993569 . T A 32.96 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.179;DP=216;Dels=0.02;FS=79.852;HaplotypeScore=17.8455;MLEAC=2;MLEAF=0.250;MQ=8.69;MQ0=0;MQRankSum=2.972;QD=0.32;ReadPosRankSum=0.169;SB=2.33 GT:AD:DP:GQ:PL 0/1:39,6:45:15:15,0,66 0/0:44,3:47:3:0,3,39 0/0:62,2:64:6:0,6,50 0/1:53,3:56:53:57,0,53 +chr21 34213979 . GA G 193.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.036;DP=62;FS=7.501;HaplotypeScore=20.8927;MLEAC=3;MLEAF=0.375;MQ=19.27;MQ0=0;MQRankSum=0.675;QD=3.96;RPA=2,1;RU=A;ReadPosRankSum=-1.315;SB=-6.802e+00;STR GT:AD:DP:GQ:PL 0/1:9,3:7:64:109,0,64 0/1:13,6:11:99:115,0,160 0/0:9,3:3:6:0,6,65 0/1:12,4:6:21:21,0,46 +chr21 34640788 rs2834167 A G 332.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.404;DB;DP=145;Dels=0.00;FS=6.046;HaplotypeScore=0.2497;MLEAC=1;MLEAF=0.125;MQ=38.62;MQ0=0;MQRankSum=-1.688;QD=10.09;ReadPosRankSum=1.776;SB=-9.099e+01 GT:AD:DP:GQ:PL 0/1:21,12:33:99:369,0,777 0/0:37,0:37:99:0,108,1475 0/0:44,0:44:99:0,126,1667 0/0:29,2:31:41:0,41,980 +chr21 34648808 rs2849997 C T 1313.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.846;DB;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.6577;MLEAC=7;MLEAF=0.875;MQ=28.94;MQ0=0;MQRankSum=-1.299;QD=21.89;ReadPosRankSum=-0.681;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,4:15:98:98,0,299 1/1:1,17:18:45:465,45,0 1/1:2,12:14:36:423,36,0 1/1:1,12:13:36:372,36,0 +chr21 34649081 . T G 166.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.260;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.5711;MLEAC=3;MLEAF=0.375;MQ=32.01;MQ0=0;MQRankSum=-5.180;QD=1.44;ReadPosRankSum=4.284;SB=0.282 GT:AD:DP:GQ:PL 0/1:38,6:45:49:49,0,743 0/1:42,7:49:65:65,0,722 0/0:54,3:57:12:0,12,1167 0/1:15,6:21:95:95,0,211 +chr21 34823252 rs2834220 C T 290.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.905;DB;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.3447;MLEAC=2;MLEAF=0.250;MQ=33.39;MQ0=0;MQRankSum=-1.123;QD=6.76;ReadPosRankSum=0.844;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:76:76,0,347 0/1:16,9:25:99:256,0,431 0/0:38,0:38:87:0,87,1148 0/0:6,0:6:12:0,12,124 +chr21 34878450 rs2070390 A T 290.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.077;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.2497;MLEAC=3;MLEAF=0.375;MQ=31.82;MQ0=0;MQRankSum=-0.746;QD=13.82;ReadPosRankSum=-0.540;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,7:12:99:167,0,166 0/0:5,0:5:12:0,12,137 0/1:1,4:5:24:135,0,24 0/1:3,1:4:31:31,0,37 +chr21 34883757 . T G 421.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.627;DP=197;Dels=0.02;FS=4.632;HaplotypeScore=13.0099;MLEAC=4;MLEAF=0.500;MQ=27.79;MQ0=0;MQRankSum=1.645;QD=2.14;ReadPosRankSum=-0.152;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:45,7:52:99:123,0,315 0/1:44,4:48:63:63,0,337 0/1:34,6:40:95:95,0,342 0/1:45,9:54:99:183,0,364 +chr21 34894643 . C T 41 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.751;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.2850;MLEAC=3;MLEAF=0.375;MQ=27.80;MQ0=0;MQRankSum=-0.878;QD=0.95;ReadPosRankSum=-0.550;SB=3.98 GT:AD:DP:GQ:PL 0/1:16,3:19:33:33,0,270 0/1:12,4:16:36:36,0,257 0/0:18,0:18:45:0,45,487 0/1:6,1:8:15:15,0,93 +chr21 34923418 . A C 72.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.700;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4044;MLEAC=2;MLEAF=0.250;MQ=21.32;MQ0=0;MQRankSum=1.507;QD=2.90;ReadPosRankSum=-0.658;SB=0.601 GT:AD:DP:GQ:PL 0/1:9,3:12:20:73,0,20 0/1:10,2:13:35:40,0,35 0/0:13,0:13:9:0,9,90 0/0:10,1:11:6:0,6,60 +chr21 34924117 . A C 52.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.646;DP=252;Dels=0.02;FS=26.363;HaplotypeScore=8.4416;MLEAC=3;MLEAF=0.375;MQ=17.22;MQ0=0;MQRankSum=1.831;QD=0.27;ReadPosRankSum=-0.473;SB=0.562 GT:AD:DP:GQ:PL 0/0:56,2:58:14:0,14,448 0/1:62,3:65:24:24,0,394 0/1:59,5:64:51:51,0,262 0/1:58,2:60:20:20,0,289 +chr21 34954170 rs62227710 A G 346.75 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.006;DB;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.4161;MLEAC=4;MLEAF=0.500;MQ=33.42;MQ0=0;MQRankSum=-0.789;QD=18.25;ReadPosRankSum=-0.082;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,7:8:21:241,21,0 0/0:7,0:7:21:0,21,272 0/1:4,4:8:99:122,0,109 0/1:2,1:3:31:32,0,31 +chr21 34956026 . T A 76.13 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.067;DP=28;Dels=0.04;FS=2.808;HaplotypeScore=9.4365;MLEAC=4;MLEAF=0.667;MQ=24.35;MQ0=0;MQRankSum=0.933;QD=2.93;ReadPosRankSum=1.067;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,1:4:27:27,0,54 0/1:7,1:8:16:23,0,16 1/1:10,3:13:6:66,6,0 ./. +chr21 34997087 . A T 46.79 . AC=2;AF=0.333;AN=6;BaseQRankSum=-2.278;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.3239;MLEAC=2;MLEAF=0.333;MQ=26.67;MQ0=0;MQRankSum=1.134;QD=0.74;ReadPosRankSum=-2.710;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,1:21:5:5,0,256 0/0:24,1:25:33:0,33,348 0/1:38,4:42:78:78,0,494 ./. +chr21 35166779 . C T 43.08 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.166;DP=133;Dels=0.00;FS=89.105;HaplotypeScore=5.9798;MLEAC=1;MLEAF=0.125;MQ=30.42;MQ0=0;MQRankSum=-2.438;QD=3.92;ReadPosRankSum=0.823;SB=-6.425e+00 GT:AD:DP:GQ:PL 0/0:34,3:37:16:0,16,631 0/0:40,3:43:13:0,13,952 0/0:39,3:42:46:0,46,839 0/1:7,3:11:75:79,0,75 +chr21 35507878 . C G 72.70 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.041;DP=26;Dels=0.00;FS=9.558;HaplotypeScore=0.8929;MLEAC=5;MLEAF=0.625;MQ=23.75;MQ0=0;MQRankSum=0.784;QD=2.80;ReadPosRankSum=0.702;SB=0.652 GT:AD:DP:GQ:PL 0/1:7,1:8:16:16,0,20 0/1:7,2:9:42:42,0,100 0/1:4,1:5:23:23,0,66 1/1:3,1:4:3:34,3,0 +chr21 36421036 rs8133634 T C 1723.55 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.542;DB;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=0.2416;MLEAC=7;MLEAF=0.875;MQ=30.76;MQ0=0;MQRankSum=-1.133;QD=22.98;ReadPosRankSum=-0.326;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,21:22:60:690,60,0 0/1:16,8:24:99:179,0,513 1/1:1,18:19:54:626,54,0 1/1:1,8:9:24:273,24,0 +chr21 37444973 rs20572 C T 620.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.094;DB;DP=84;Dels=0.00;FS=8.502;HaplotypeScore=0.9031;MLEAC=3;MLEAF=0.375;MQ=30.47;MQ0=0;MQRankSum=1.430;QD=11.09;ReadPosRankSum=0.371;SB=-2.130e+02 GT:AD:DP:GQ:PL 0/1:9,6:15:99:147,0,222 0/0:28,0:28:75:0,75,857 0/1:15,9:24:99:279,0,400 0/1:9,8:17:99:238,0,198 +chr21 37584357 . A T 373.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.887;DP=134;Dels=0.02;FS=19.613;HaplotypeScore=33.1563;MLEAC=4;MLEAF=0.500;MQ=24.17;MQ0=0;MQRankSum=1.206;QD=2.79;ReadPosRankSum=1.479;SB=-7.012e+00 GT:AD:DP:GQ:PL 0/1:25,9:34:99:196,0,271 0/1:26,4:31:68:68,0,179 0/1:33,6:39:99:110,0,428 0/1:24,3:27:42:42,0,305 +chr21 37603435 . G T 464.78 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.311;DP=53;Dels=0.02;FS=29.486;HaplotypeScore=8.9582;MLEAC=5;MLEAF=0.625;MQ=26.98;MQ0=0;MQRankSum=-1.441;QD=8.77;ReadPosRankSum=1.962;SB=-7.527e-01 GT:AD:DP:GQ:PL 0/1:2,6:8:21:37,0,21 1/1:4,12:16:21:203,21,0 0/1:7,6:13:15:145,0,15 0/1:6,9:15:71:125,0,71 +chr21 37664372 rs9977791 C T 621.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.405;DB;DP=246;Dels=0.00;FS=1.520;HaplotypeScore=0.7339;MLEAC=1;MLEAF=0.125;MQ=39.87;MQ0=0;MQRankSum=-2.336;QD=13.23;ReadPosRankSum=1.281;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/0:74,0:74:99:0,217,2961 0/1:27,20:47:99:658,0,904 0/0:81,0:81:99:0,238,3207 0/0:44,0:44:99:0,129,1740 +chr21 37692589 rs2236433 A T 56.26 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.550;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.4666;MLEAC=3;MLEAF=0.750;MQ=30.61;MQ0=0;MQRankSum=0.000;QD=8.04;ReadPosRankSum=0.550;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 0/1:3,2:5:63:63,0,93 1/1:1,1:2:3:28,3,0 +chr21 37769705 . T G 30.38 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.050;DP=62;Dels=0.00;FS=2.409;HaplotypeScore=1.6383;MLEAC=3;MLEAF=0.375;MQ=24.49;MQ0=0;MQRankSum=-0.708;QD=0.66;ReadPosRankSum=-0.907;SB=-9.270e-02 GT:AD:DP:GQ:PL 0/1:14,2:16:43:43,0,156 0/0:16,0:16:30:0,30,284 0/1:19,5:25:19:19,0,395 0/1:4,1:5:11:11,0,77 +chr21 38532086 rs149968808 TG T 3406 . AC=8;AF=1.00;AN=8;DB;DP=81;FS=0.000;HaplotypeScore=58.5701;MLEAC=8;MLEAF=1.00;MQ=34.89;MQ0=0;QD=42.05;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:0,23:22:66:1000,66,0 1/1:1,21:22:63:953,63,0 1/1:0,26:27:78:1181,78,0 1/1:1,7:6:18:272,18,0 +chr21 38539937 rs116988557 C A 61.16 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.299;DB;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5137;MLEAC=4;MLEAF=0.500;MQ=32.94;MQ0=0;MQRankSum=-3.073;QD=0.80;ReadPosRankSum=-0.351;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,4:21:27:27,0,342 0/1:19,2:21:8:8,0,390 0/1:22,3:25:21:21,0,401 0/1:7,2:9:47:47,0,89 +chr21 38597984 . A G 296.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.170;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.2195;MLEAC=4;MLEAF=0.500;MQ=29.91;MQ0=0;MQRankSum=-1.686;QD=6.45;ReadPosRankSum=2.923;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,3:11:90:90,0,164 0/1:6,6:12:28:130,0,28 0/1:10,3:13:47:47,0,235 0/1:7,3:10:66:72,0,66 +chr21 38740334 rs75230080 G C 63.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=-0.720;DB;DP=14;Dels=0.00;FS=8.451;HaplotypeScore=4.4515;MLEAC=4;MLEAF=1.00;MQ=18.79;MQ0=0;MQRankSum=0.720;QD=7.02;ReadPosRankSum=0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,2:5:3:31,3,0 ./. 1/1:2,2:4:6:66,6,0 +chr21 39528616 . A G 70.67 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.457;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=36.19;MQ0=0;MQRankSum=-0.251;QD=14.13;ReadPosRankSum=0.251;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,3:5:69:106,0,69 0/0:9,0:9:24:0,24,308 0/0:6,0:6:12:0,12,171 0/0:2,0:2:3:0,3,34 +chr21 40191389 rs79406319 T G 638.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.853;DB;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3960;MLEAC=4;MLEAF=0.500;MQ=31.35;MQ0=0;MQRankSum=2.891;QD=8.08;ReadPosRankSum=1.393;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:11,5:16:99:146,0,261 0/1:14,5:20:99:137,0,226 0/1:14,7:21:99:237,0,223 0/1:17,5:22:99:161,0,109 +chr21 40352557 rs2256227 T C 31.02 . AC=4;AF=1.00;AN=4;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=17.20;MQ0=0;QD=10.34;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:0,1:2:3:32,3,0 1/1:0,1:1:3:32,3,0 ./. +chr21 40499540 rs141199159 C G 33.38 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.658;DB;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=12.1852;MLEAC=5;MLEAF=0.625;MQ=12.27;MQ0=0;MQRankSum=2.599;QD=0.76;ReadPosRankSum=-1.659;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:11,1:12:3:33,3,0 0/0:8,0:8:3:0,3,23 1/1:14,1:15:3:22,3,0 0/1:16,1:17:20:20,0,20 +chr21 40543811 rs2836929 T C 158.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.066;DB;DP=37;Dels=0.00;FS=3.764;HaplotypeScore=2.2018;MLEAC=4;MLEAF=0.500;MQ=30.97;MQ0=0;MQRankSum=-0.500;QD=4.29;ReadPosRankSum=-0.762;SB=-5.521e+01 GT:AD:DP:GQ:PL 0/1:4,3:7:85:85,0,135 0/1:12,2:14:37:37,0,250 0/1:7,1:8:24:24,0,145 0/1:6,2:8:55:55,0,101 +chr21 40550526 . TGTG T 1238.54 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.716;DP=99;FS=0.000;HaplotypeScore=87.8401;MLEAC=4;MLEAF=0.500;MQ=21.10;MQ0=0;MQRankSum=0.885;QD=12.51;ReadPosRankSum=-2.116;SB=-1.476e-03 GT:AD:DP:GQ:PL 0/1:20,9:21:99:517,0,278 0/1:10,9:12:59:452,0,59 0/1:27,3:21:99:140,0,508 0/1:9,4:8:28:181,0,28 +chr21 40574305 rs2183573 A G 1129.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=3.694;DB;DP=116;Dels=0.02;FS=5.703;HaplotypeScore=6.7583;MLEAC=4;MLEAF=0.500;MQ=30.32;MQ0=0;MQRankSum=0.404;QD=9.74;ReadPosRankSum=0.514;SB=-1.860e+02 GT:AD:DP:GQ:PL 0/1:20,11:31:99:324,0,514 0/1:23,15:38:99:425,0,560 0/1:20,15:35:99:412,0,365 0/1:9,1:10:11:11,0,200 +chr21 40587049 rs4818004 A G 167.73 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.542;DB;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=20.01;MQ0=0;MQRankSum=1.156;QD=7.29;ReadPosRankSum=-0.578;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,5:6:3:32,3,0 1/1:2,5:7:6:60,6,0 1/1:1,5:6:6:60,6,0 1/1:2,2:4:6:53,6,0 +chr21 40871810 rs9974333 T C 219.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.967;DB;DP=161;Dels=0.00;FS=1.259;HaplotypeScore=1.5561;MLEAC=1;MLEAF=0.125;MQ=34.54;MQ0=0;MQRankSum=-1.772;QD=6.87;ReadPosRankSum=0.974;SB=-9.601e+01 GT:AD:DP:GQ:PL 0/1:22,10:32:99:256,0,710 0/0:43,0:43:99:0,117,1458 0/0:51,0:51:99:0,144,1803 0/0:34,0:35:75:0,75,890 +chr21 41457445 . T A 97.38 . AC=1;AF=0.167;AN=6;BaseQRankSum=0.455;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3012;MLEAC=1;MLEAF=0.167;MQ=29.70;MQ0=0;MQRankSum=-1.435;QD=4.64;ReadPosRankSum=1.365;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,1:19:12:0,12,135 0/1:16,5:21:64:132,0,64 0/0:11,0:11:18:0,18,181 ./. +chr21 42615293 rs2252576 C T 182.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.811;DB;DP=104;Dels=0.03;FS=0.000;HaplotypeScore=2.2524;MLEAC=1;MLEAF=0.125;MQ=36.41;MQ0=0;MQRankSum=-2.277;QD=6.78;ReadPosRankSum=0.811;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:17,8:25:99:219,0,586 0/0:30,0:30:84:0,84,1127 0/0:34,0:34:99:0,99,1268 0/0:12,0:12:27:0,27,309 +chr21 42815655 . A T 128.64 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.241;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.5120;MLEAC=3;MLEAF=0.375;MQ=30.54;MQ0=0;MQRankSum=-2.219;QD=1.27;ReadPosRankSum=-0.350;SB=0.557 GT:AD:DP:GQ:PL 0/1:30,3:33:18:18,0,709 0/0:40,3:44:8:0,8,872 0/1:35,7:42:92:92,0,815 0/1:22,3:26:61:61,0,279 +chr21 42830399 . A T 89.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.296;DP=158;Dels=0.03;FS=0.000;HaplotypeScore=9.6555;MLEAC=2;MLEAF=0.250;MQ=28.55;MQ0=0;MQRankSum=-1.172;QD=1.12;ReadPosRankSum=-2.927;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:34,0:34:63:0,63,730 0/0:39,1:40:38:0,38,603 0/1:42,4:46:55:55,0,268 0/1:28,5:33:76:76,0,341 +chr21 42848560 rs10540480 CAG C 3192.95 . AC=8;AF=1.00;AN=8;DB;DP=66;FS=0.000;HaplotypeScore=3.0245;MLEAC=8;MLEAF=1.00;MQ=34.81;MQ0=0;QD=48.38;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:2,15:15:45:831,45,0 1/1:1,17:22:57:1033,57,0 1/1:1,17:18:54:989,54,0 1/1:1,7:7:21:388,21,0 +chr21 42860348 . G T 237.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.747;DP=74;Dels=0.01;FS=48.594;HaplotypeScore=14.1727;MLEAC=4;MLEAF=0.500;MQ=25.95;MQ0=0;MQRankSum=1.031;QD=3.21;ReadPosRankSum=0.218;SB=-1.359e-01 GT:AD:DP:GQ:PL 0/1:12,1:14:14:14,0,110 0/1:15,6:21:99:125,0,178 0/1:15,3:19:53:53,0,205 0/1:15,4:19:88:88,0,126 +chr21 43222779 rs2838128 A G 480.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.835;DB;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=1.2011;MLEAC=4;MLEAF=0.500;MQ=32.25;MQ0=0;MQRankSum=-5.091;QD=9.81;ReadPosRankSum=1.931;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:251,27,0 0/0:23,0:23:66:0,66,851 0/1:5,6:11:99:118,0,168 0/1:14,10:24:99:160,0,452 +chr21 43309409 . G T 82.47 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.295;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.0145;MLEAC=3;MLEAF=0.375;MQ=26.80;MQ0=0;MQRankSum=0.515;QD=1.42;ReadPosRankSum=-1.170;SB=-1.379e-02 GT:AD:DP:GQ:PL 0/1:15,3:18:73:73,0,165 0/1:19,2:21:20:20,0,278 0/1:17,2:19:32:32,0,186 0/0:14,1:15:9:0,9,106 +chr21 43531553 rs220128 A C 1238.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.642;DB;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7644;MLEAC=4;MLEAF=0.500;MQ=32.69;MQ0=0;MQRankSum=-2.993;QD=9.75;ReadPosRankSum=1.778;SB=-3.280e+02 GT:AD:DP:GQ:PL 0/1:16,8:24:99:201,0,434 0/1:15,15:30:99:340,0,304 0/1:21,20:41:99:572,0,566 0/1:25,7:32:99:168,0,610 +chr21 43679452 . C T 76.31 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.146;DP=94;Dels=0.00;FS=7.265;HaplotypeScore=4.8702;MLEAC=2;MLEAF=0.250;MQ=29.29;MQ0=0;MQRankSum=1.861;QD=1.32;ReadPosRankSum=-0.626;SB=0.525 GT:AD:DP:GQ:PL 0/0:12,0:12:21:0,21,252 0/1:26,5:31:99:104,0,373 0/0:23,1:24:19:0,19,496 0/1:25,2:27:13:13,0,385 +chr21 43679513 rs915842 C T 193.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.867;DB;DP=189;Dels=0.01;FS=8.997;HaplotypeScore=0.9951;MLEAC=1;MLEAF=0.125;MQ=37.13;MQ0=0;MQRankSum=-2.131;QD=5.11;ReadPosRankSum=0.789;SB=-6.899e+01 GT:AD:DP:GQ:PL 0/1:29,9:38:99:230,0,926 0/0:47,0:47:99:0,123,1629 0/0:63,0:63:99:0,181,2366 0/0:40,0:40:99:0,105,1415 +chr21 43692452 . T A 73.20 . AC=7;AF=0.875;AN=8;BaseQRankSum=-0.684;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.1746;MLEAC=7;MLEAF=0.875;MQ=23.62;MQ0=0;MQRankSum=0.322;QD=8.13;ReadPosRankSum=1.517;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,1:3:17:29,0,17 1/1:2,2:4:3:24,3,0 1/1:0,1:1:3:32,3,0 1/1:0,1:1:3:28,3,0 +chr21 43716358 . C T 299.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.744;DP=174;Dels=0.02;FS=102.531;HaplotypeScore=3.7680;MLEAC=4;MLEAF=0.500;MQ=32.66;MQ0=0;MQRankSum=-4.981;QD=1.72;ReadPosRankSum=4.499;SB=-2.336e-02 GT:AD:DP:GQ:PL 0/1:42,4:46:25:25,0,1079 0/1:30,4:34:45:45,0,664 0/1:38,8:46:99:145,0,868 0/1:35,9:45:99:127,0,756 +chr21 43733531 rs189544424 G A 60.39 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.775;DB;DP=46;Dels=0.02;FS=2.507;HaplotypeScore=12.5735;MLEAC=6;MLEAF=0.750;MQ=14.88;MQ0=0;MQRankSum=2.775;QD=1.31;ReadPosRankSum=1.025;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:13:18:21,0,18 1/1:10,1:11:3:30,3,0 1/1:7,2:10:3:33,3,0 0/1:8,2:11:18:18,0,28 +chr21 43816195 . C T 181.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.260;DP=240;Dels=0.02;FS=32.064;HaplotypeScore=6.7236;MLEAC=1;MLEAF=0.125;MQ=33.75;MQ0=0;MQRankSum=-1.713;QD=2.89;ReadPosRankSum=-0.312;SB=-1.108e-02 GT:AD:DP:GQ:PL 0/0:61,1:62:85:0,85,1472 0/1:48,13:61:99:218,0,1244 0/0:63,2:65:94:0,94,1715 0/0:47,0:48:99:0,99,1097 +chr21 43962525 . G T 117.98 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.234;DP=44;Dels=0.00;FS=5.656;HaplotypeScore=2.2663;MLEAC=3;MLEAF=0.375;MQ=28.61;MQ0=0;MQRankSum=-1.169;QD=3.03;ReadPosRankSum=1.036;SB=0.893 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,55 0/1:6,1:8:21:21,0,55 0/1:14,4:18:97:97,0,107 0/1:9,2:13:42:42,0,61 +chr21 43967084 rs118178746 T C 349 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.720;DB;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.2467;MLEAC=1;MLEAF=0.125;MQ=34.61;MQ0=0;MQRankSum=0.202;QD=16.62;ReadPosRankSum=1.756;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,0:19:51:0,51,632 0/1:9,12:21:99:385,0,266 0/0:10,0:10:27:0,27,290 0/0:9,0:9:24:0,24,321 +chr21 44188485 rs2284977 T A 645.42 . AC=8;AF=1.00;AN=8;DB;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.9854;MLEAC=8;MLEAF=1.00;MQ=35.39;MQ0=0;QD=33.97;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,7:8:21:269,21,0 1/1:0,5:5:15:181,15,0 1/1:0,4:4:12:155,12,0 1/1:0,2:2:6:79,6,0 +chr21 44329132 . G A 71.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.064;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.7170;MLEAC=3;MLEAF=0.375;MQ=26.87;MQ0=0;MQRankSum=-4.893;QD=0.73;ReadPosRankSum=-1.104;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,7:33:31:31,0,412 0/1:26,9:35:61:61,0,369 0/0:40,5:45:31:0,31,742 0/1:25,5:31:23:23,0,474 +chr21 44485610 . C G 34.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.912;DP=49;Dels=0.00;FS=2.578;HaplotypeScore=10.0343;MLEAC=4;MLEAF=0.500;MQ=22.78;MQ0=0;MQRankSum=-0.274;QD=0.71;ReadPosRankSum=-1.550;SB=-1.438e+00 GT:AD:DP:GQ:PL 0/1:12,1:13:13:13,0,153 0/1:10,2:12:25:25,0,30 0/1:14,1:15:2:2,0,167 0/1:6,3:9:35:35,0,58 +chr21 44617549 rs4538294 C G 37.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.231;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=14.87;MQ0=0;MQRankSum=1.231;QD=7.40;ReadPosRankSum=-0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,2:4:3:35,3,0 ./. 1/1:0,1:1:3:35,3,0 +chr21 44870150 rs11088981 C A 170.28 . AC=5;AF=0.833;AN=6;BaseQRankSum=-0.107;DB;DP=20;Dels=0.00;FS=25.611;HaplotypeScore=0.9631;MLEAC=5;MLEAF=0.833;MQ=25.76;MQ0=0;MQRankSum=0.107;QD=10.02;ReadPosRankSum=2.041;SB=2.56 GT:AD:DP:GQ:PL 0/1:2,5:7:30:102,0,30 1/1:4,3:7:6:67,6,0 ./. 1/1:1,2:3:3:40,3,0 +chr21 45220388 . T C 75.62 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.086;DP=116;Dels=0.00;FS=2.276;HaplotypeScore=1.5562;MLEAC=2;MLEAF=0.250;MQ=33.39;MQ0=0;MQRankSum=0.631;QD=1.26;ReadPosRankSum=-2.189;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:22,1:24:25:0,25,719 0/0:31,1:32:17:0,17,430 0/1:31,4:35:48:48,0,522 0/1:21,4:25:69:69,0,611 +chr21 45275903 . T A 73.37 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.970;DP=47;Dels=0.02;FS=19.082;HaplotypeScore=4.1486;MLEAC=2;MLEAF=0.250;MQ=30.48;MQ0=0;MQRankSum=-1.263;QD=2.72;ReadPosRankSum=1.153;SB=-2.051e+00 GT:AD:DP:GQ:PL 0/0:6,0:6:15:0,15,210 0/0:12,1:13:24:0,24,310 0/1:14,2:16:6:6,0,292 0/1:6,4:11:81:106,0,81 +chr21 45389261 rs73906692 A G 30.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.927;DB;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.1663;MLEAC=1;MLEAF=0.125;MQ=28.87;MQ0=0;MQRankSum=1.473;QD=6.01;ReadPosRankSum=0.273;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:51:66,0,51 0/0:8,0:8:15:0,15,166 0/0:7,0:7:18:0,18,224 0/0:7,0:7:18:0,18,194 +chr21 45390700 . C A 202.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.783;DP=79;Dels=0.00;FS=2.499;HaplotypeScore=7.6374;MLEAC=4;MLEAF=0.500;MQ=23.97;MQ0=0;MQRankSum=1.961;QD=2.57;ReadPosRankSum=-0.898;SB=-1.205e-02 GT:AD:DP:GQ:PL 0/1:16,5:21:99:131,0,201 0/1:22,3:25:59:59,0,193 0/1:14,3:17:39:39,0,158 0/1:13,3:16:16:16,0,70 +chr21 45475489 rs9306172 G C 775.86 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.658;DB;DP=50;Dels=0.00;FS=10.861;HaplotypeScore=0.0000;MLEAC=6;MLEAF=0.750;MQ=31.81;MQ0=0;MQRankSum=0.738;QD=15.52;ReadPosRankSum=-3.092;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,5:15:99:169,0,228 0/1:10,5:15:99:149,0,280 1/1:3,9:12:21:256,21,0 1/1:1,7:8:21:248,21,0 +chr21 45514141 rs11287102 TG T 1662.60 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.619;DB;DP=96;FS=0.000;HaplotypeScore=149.4845;MLEAC=5;MLEAF=0.625;MQ=26.33;MQ0=0;MQRankSum=-0.345;QD=17.32;RPA=5,4;RU=G;ReadPosRankSum=3.491;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:15,9:22:6:444,0,6 0/1:19,11:29:44:509,0,44 1/1:14,15:26:23:586,23,0 0/1:7,4:9:13:177,0,13 +chr21 45523202 . A T 219.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.697;DP=68;Dels=0.00;FS=43.246;HaplotypeScore=0.7449;MLEAC=4;MLEAF=0.500;MQ=30.90;MQ0=0;MQRankSum=-1.697;QD=3.23;ReadPosRankSum=-0.162;SB=-1.302e-01 GT:AD:DP:GQ:PL 0/1:10,2:12:24:24,0,113 0/1:15,5:20:99:117,0,201 0/1:16,4:20:99:106,0,261 0/1:14,2:16:15:15,0,274 +chr21 45540103 rs62226722 G A 111.39 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.453;DB;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=19.87;MQ0=0;MQRankSum=2.450;QD=10.13;ReadPosRankSum=1.951;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:18:70,0,18 1/1:2,1:3:3:25,3,0 ./. 1/1:2,2:4:6:55,6,0 +chr21 45546023 . T A 130.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.824;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6649;MLEAC=3;MLEAF=0.375;MQ=26.15;MQ0=0;MQRankSum=-1.795;QD=2.34;ReadPosRankSum=2.169;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,4:25:59:59,0,303 0/1:17,3:20:42:42,0,134 0/1:8,3:11:67:71,0,67 0/0:20,1:21:3:0,3,249 +chr21 45560132 . G T 41.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.302;DP=173;Dels=0.00;FS=43.080;HaplotypeScore=2.2145;MLEAC=1;MLEAF=0.125;MQ=39.63;MQ0=0;MQRankSum=-1.284;QD=1.05;ReadPosRankSum=1.362;SB=-6.801e+00 GT:AD:DP:GQ:PL 0/1:34,6:40:78:78,0,1191 0/0:35,2:37:33:0,33,1273 0/0:48,1:49:99:0,114,1796 0/0:45,2:47:52:0,52,1321 +chr21 45657195 rs56284221 A T 50.28 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.383;DB;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=31.55;MQ0=0;MQRankSum=1.626;QD=4.57;ReadPosRankSum=1.626;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:33:0,33,393 0/1:4,2:6:61:61,0,111 0/1:4,1:5:28:28,0,118 ./. +chr21 45679258 rs2276248 T C 438.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.098;DB;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=32.42;MQ0=0;MQRankSum=-2.007;QD=7.44;ReadPosRankSum=0.396;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:39:0,39,477 0/1:10,5:15:99:126,0,295 0/1:14,7:21:99:186,0,330 0/1:16,7:23:99:170,0,470 +chr21 45725715 rs9975113 A G 110.73 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.157;DB;DP=79;Dels=0.01;FS=7.453;HaplotypeScore=2.8825;MLEAC=2;MLEAF=0.250;MQ=31.30;MQ0=0;MQRankSum=-2.141;QD=3.08;ReadPosRankSum=-0.355;SB=-6.744e+01 GT:AD:DP:GQ:PL 0/1:9,4:13:99:103,0,212 0/0:25,0:25:60:0,60,729 0/1:19,4:23:49:49,0,464 0/0:15,2:17:12:0,12,442 +chr21 45736055 . T C 89.71 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.906;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=5.7438;MLEAC=4;MLEAF=0.500;MQ=19.45;MQ0=0;MQRankSum=0.906;QD=3.90;ReadPosRankSum=-0.091;SB=9.546e-03 GT:AD:DP:GQ:PL 0/1:5,1:6:26:26,0,26 0/0:7,1:9:6:0,6,56 0/1:7,2:9:55:55,0,55 1/1:5,3:8:6:53,6,0 +chr21 45745873 . C A 36.61 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.654;DP=44;Dels=0.00;FS=9.670;HaplotypeScore=1.8715;MLEAC=2;MLEAF=0.250;MQ=30.88;MQ0=0;MQRankSum=-0.609;QD=2.15;ReadPosRankSum=-0.879;SB=0.181 GT:AD:DP:GQ:PL 0/1:5,2:7:47:47,0,144 0/0:12,0:12:18:0,18,203 0/0:15,0:15:36:0,36,423 0/1:8,2:10:31:31,0,241 +chr21 45844751 rs9978351 A G 294.35 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.079;DB;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.6185;MLEAC=8;MLEAF=1.00;MQ=22.89;MQ0=0;MQRankSum=2.583;QD=13.38;ReadPosRankSum=0.945;SB=-2.496e+01 GT:AD:DP:GQ:PL 1/1:2,1:3:3:35,3,0 1/1:1,4:5:6:61,6,0 1/1:1,5:6:15:174,15,0 1/1:4,4:8:6:62,6,0 +chr21 45876436 . G T 67.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.778;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.9233;MLEAC=4;MLEAF=0.500;MQ=23.92;MQ0=0;MQRankSum=-0.254;QD=2.69;ReadPosRankSum=1.778;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,1:6:6:0,6,61 1/1:1,1:2:3:33,3,0 0/1:10,3:14:44:44,0,156 0/1:7,2:9:33:33,0,108 +chr21 46047682 . T C 132.12 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.455;DP=318;Dels=0.00;FS=27.653;HaplotypeScore=3.0621;MLEAC=3;MLEAF=0.375;MQ=12.83;MQ0=0;MQRankSum=4.773;QD=0.55;ReadPosRankSum=-0.899;SB=-1.847e-01 GT:AD:DP:GQ:PL 0/1:77,4:81:81:81,0,163 0/1:60,3:63:81:81,0,104 0/1:93,4:97:13:13,0,347 0/0:76,1:77:24:0,24,280 +chr21 46086407 rs12481809 C T 74.78 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.504;DB;DP=112;Dels=0.00;FS=5.067;HaplotypeScore=0.7150;MLEAC=3;MLEAF=0.375;MQ=12.32;MQ0=0;MQRankSum=0.593;QD=1.29;ReadPosRankSum=0.241;SB=-4.104e+01 GT:AD:DP:GQ:PL 0/1:19,10:29:9:94,0,9 1/1:20,9:29:3:22,3,0 0/0:30,0:30:3:0,3,27 0/0:24,0:24:12:0,12,113 +chr21 46117596 . C G 32.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.310;DP=292;Dels=0.00;FS=34.449;HaplotypeScore=5.6173;MLEAC=3;MLEAF=0.375;MQ=8.65;MQ0=0;MQRankSum=2.091;QD=0.22;ReadPosRankSum=0.383;SB=-8.038e+00 GT:AD:DP:GQ:PL 1/1:72,6:78:6:62,6,0 0/0:70,4:74:6:0,6,59 0/0:67,1:68:12:0,12,96 0/1:69,3:72:14:14,0,47 +chr21 46271452 rs235314 C T 924.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.348;DB;DP=114;Dels=0.01;FS=5.073;HaplotypeScore=12.4745;MLEAC=4;MLEAF=0.500;MQ=30.18;MQ0=0;MQRankSum=-0.191;QD=8.11;ReadPosRankSum=0.857;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:26,10:37:99:291,0,433 0/1:11,9:20:77:244,0,77 0/1:18,13:31:99:362,0,443 0/1:19,5:25:70:70,0,448 +chr21 46596480 . T A 48.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.152;DP=119;Dels=0.01;FS=16.650;HaplotypeScore=14.7419;MLEAC=3;MLEAF=0.375;MQ=29.94;MQ0=0;MQRankSum=-0.199;QD=0.61;ReadPosRankSum=-0.544;SB=-6.252e-01 GT:AD:DP:GQ:PL 0/1:24,3:27:48:48,0,417 0/1:24,3:27:34:34,0,347 0/0:38,2:40:9:0,9,635 0/1:23,1:24:8:8,0,207 +chr21 46624487 . T C 190.93 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.159;DP=98;Dels=0.04;FS=38.447;HaplotypeScore=10.5103;MLEAC=4;MLEAF=0.500;MQ=25.49;MQ0=0;MQRankSum=-2.188;QD=1.95;ReadPosRankSum=0.549;SB=-7.445e-02 GT:AD:DP:GQ:PL 0/1:23,6:29:99:104,0,466 0/1:18,3:21:10:10,0,326 0/1:20,3:23:32:32,0,308 0/1:13,8:21:55:87,0,55 +chr21 46895514 . G T 81.49 . AC=5;AF=0.625;AN=8;BaseQRankSum=-0.634;DP=32;Dels=0.00;FS=2.634;HaplotypeScore=0.3670;MLEAC=5;MLEAF=0.625;MQ=18.93;MQ0=0;MQRankSum=2.870;QD=2.55;ReadPosRankSum=-1.304;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,2:7:6:59,6,0 0/1:8,1:9:19:20,0,19 0/1:5,1:6:16:16,0,23 0/1:9,1:10:30:30,0,46 +chr21 46952094 rs914231 T C 55.29 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.597;DB;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7188;MLEAC=3;MLEAF=0.375;MQ=30.08;MQ0=0;MQRankSum=-0.917;QD=2.51;ReadPosRankSum=1.732;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,2:3:3:38,3,0 0/0:8,0:8:15:0,15,203 0/1:7,2:9:48:48,0,211 0/1:8,1:10:13:13,0,169 +chr21 47334075 . C G 114.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.465;DP=34;Dels=0.00;FS=5.375;HaplotypeScore=1.7932;MLEAC=3;MLEAF=0.375;MQ=23.71;MQ0=0;MQRankSum=0.950;QD=3.96;ReadPosRankSum=-0.424;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:3,2:5:15:15,0,48 0/0:4,1:5:3:0,3,32 0/1:10,5:15:99:132,0,175 0/1:8,1:9:8:8,0,142 +chr21 47417303 rs2839077 T C 805.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.772;DB;DP=72;Dels=0.00;FS=2.264;HaplotypeScore=2.8683;MLEAC=4;MLEAF=0.500;MQ=33.28;MQ0=0;MQRankSum=-0.724;QD=11.19;ReadPosRankSum=-1.069;SB=-3.710e+02 GT:AD:DP:GQ:PL 0/1:11,5:16:99:101,0,192 0/1:10,9:19:99:269,0,245 0/1:10,12:22:99:389,0,265 0/1:11,3:15:89:89,0,241 +chr21 47545155 rs2839113 A G 128.69 . AC=5;AF=0.625;AN=8;BaseQRankSum=5.222;DB;DP=88;Dels=0.01;FS=11.356;HaplotypeScore=9.2916;MLEAC=5;MLEAF=0.625;MQ=20.87;MQ0=0;MQRankSum=-1.752;QD=1.46;ReadPosRankSum=1.769;SB=-3.206e+01 GT:AD:DP:GQ:PL 0/1:17,3:22:17:17,0,144 1/1:10,8:18:9:94,9,0 0/1:20,5:26:58:58,0,182 0/1:18,3:21:3:3,0,205 +chr21 47545966 . C T 255.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.634;DP=102;Dels=0.05;FS=5.669;HaplotypeScore=39.7689;MLEAC=3;MLEAF=0.375;MQ=21.25;MQ0=0;MQRankSum=-0.377;QD=3.55;ReadPosRankSum=0.171;SB=-1.347e+02 GT:AD:DP:GQ:PL 0/1:15,7:22:99:135,0,104 0/1:11,5:17:37:37,0,56 0/1:20,8:28:99:127,0,152 0/0:25,5:30:15:0,15,125 +chr21 47616233 . T C 34.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.971;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4311;MLEAC=2;MLEAF=0.250;MQ=34.56;MQ0=0;MQRankSum=-4.335;QD=1.05;ReadPosRankSum=-0.146;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:20,1:21:45:0,45,578 0/1:12,5:17:36:36,0,355 0/0:16,1:17:12:0,12,412 0/1:13,3:16:40:40,0,349 +chr21 47636489 . C G 31.57 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.720;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=18.36;MQ0=0;MQRankSum=1.380;QD=6.31;ReadPosRankSum=0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,2:5:6:69,6,0 ./. 0/0:4,0:4:6:0,6,55 0/0:1,0:1:3:0,3,23 +chr21 47642658 . T A 30.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.950;DP=26;Dels=0.00;FS=6.767;HaplotypeScore=1.6406;MLEAC=2;MLEAF=0.250;MQ=27.95;MQ0=0;MQRankSum=-1.250;QD=1.71;ReadPosRankSum=0.550;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,80 0/1:7,1:8:19:19,0,96 0/0:5,0:5:9:0,9,110 0/1:7,3:10:52:52,0,54 +chr21 47676711 rs2839173 G A 33.26 . AC=3;AF=0.750;AN=4;BaseQRankSum=0.358;DB;DP=9;Dels=0.00;FS=4.771;HaplotypeScore=2.3241;MLEAC=3;MLEAF=0.750;MQ=25.96;MQ0=0;MQRankSum=1.231;QD=5.54;ReadPosRankSum=0.358;SB=-2.426e+01 GT:AD:DP:GQ:PL ./. ./. 0/1:3,1:4:26:29,0,26 1/1:1,1:2:3:39,3,0 +chr21 47777063 rs2839223 G A 1744.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.408;DB;DP=167;Dels=0.00;FS=8.047;HaplotypeScore=1.9764;MLEAC=5;MLEAF=0.625;MQ=33.05;MQ0=0;MQRankSum=-3.345;QD=10.45;ReadPosRankSum=1.489;SB=-6.810e+02 GT:AD:DP:GQ:PL 0/1:34,10:44:99:234,0,998 1/1:6,25:31:51:821,51,0 0/1:37,19:56:99:495,0,1123 0/1:26,10:36:99:240,0,797 +chr21 47857036 . C T 74.27 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.922;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=4.9562;MLEAC=4;MLEAF=0.500;MQ=19.22;MQ0=0;MQRankSum=1.090;QD=2.06;ReadPosRankSum=2.557;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:57:57,0,77 0/0:11,1:13:3:0,3,32 1/1:5,2:7:6:51,6,0 0/1:12,2:14:9:9,0,92 +chr21 47918662 rs7283507 C G 105.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.773;DB;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=6.1336;MLEAC=1;MLEAF=0.125;MQ=30.96;MQ0=0;MQRankSum=-1.801;QD=2.65;ReadPosRankSum=1.776;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,105,1238 0/1:29,9:39:99:142,0,651 0/0:38,0:38:99:0,105,1309 0/0:32,0:32:78:0,78,881 +chr21 47967065 . A C 155.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.180;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.1998;MLEAC=3;MLEAF=0.375;MQ=29.60;MQ0=0;MQRankSum=0.108;QD=3.12;ReadPosRankSum=0.347;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,5:10:58:141,0,58 0/0:16,1:17:6:0,6,259 0/1:23,2:25:22:22,0,353 0/1:12,3:15:35:35,0,196 +chr22 16868468 rs67116710 C T 53.26 . AC=3;AF=0.750;AN=4;BaseQRankSum=2.747;DB;DP=188;Dels=0.01;FS=3.410;HaplotypeScore=0.9747;MLEAC=3;MLEAF=0.750;MQ=6.88;MQ0=0;MQRankSum=1.643;QD=0.56;ReadPosRankSum=0.712;SB=0.946 GT:AD:DP:GQ:PL ./. ./. 1/1:17,30:47:3:27,3,0 0/1:29,19:48:30:61,0,30 +chr22 17177693 . C T 31.37 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.034;DP=16;Dels=0.00;FS=3.090;HaplotypeScore=1.4433;MLEAC=4;MLEAF=0.667;MQ=18.95;MQ0=0;MQRankSum=1.034;QD=1.96;ReadPosRankSum=-0.278;SB=0.896 GT:AD:DP:GQ:PL 1/1:2,2:4:3:29,3,0 ./. 0/1:5,1:6:16:16,0,37 0/1:5,1:6:25:25,0,27 +chr22 17265194 rs114989947 G A 1855.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.753;DB;DP=158;Dels=0.01;FS=5.101;HaplotypeScore=0.8915;MLEAC=4;MLEAF=0.500;MQ=35.78;MQ0=0;MQRankSum=0.913;QD=17.18;ReadPosRankSum=-0.628;SB=-8.040e+02 GT:AD:DP:GQ:PL 0/0:50,0:50:90:0,90,1219 1/1:3,40:43:99:1497,117,0 0/1:32,12:44:99:330,0,785 0/1:16,3:20:77:77,0,414 +chr22 17341566 . T A 70.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.604;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=1.3090;MLEAC=2;MLEAF=0.250;MQ=27.06;MQ0=0;MQRankSum=2.239;QD=3.37;ReadPosRankSum=-0.320;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:15:0,15,142 0/0:10,0:10:21:0,21,213 0/1:9,1:10:29:29,0,67 0/1:8,3:11:48:83,0,48 +chr22 17589595 . T G 159.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.449;DP=39;Dels=0.00;FS=21.676;HaplotypeScore=1.3282;MLEAC=4;MLEAF=0.500;MQ=35.82;MQ0=0;MQRankSum=0.874;QD=4.09;ReadPosRankSum=-2.150;SB=-4.287e-01 GT:AD:DP:GQ:PL 0/1:9,3:12:99:100,0,163 0/1:7,1:8:29:29,0,109 0/1:9,1:10:19:19,0,257 0/1:7,2:9:54:54,0,105 +chr22 17623837 rs5747009 A G 232.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.418;DB;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9144;MLEAC=2;MLEAF=0.250;MQ=35.26;MQ0=0;MQRankSum=-2.172;QD=8.02;ReadPosRankSum=1.180;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,5:13:99:130,0,225 0/1:11,5:16:99:144,0,313 0/0:14,0:14:36:0,36,459 0/0:19,0:19:57:0,57,700 +chr22 17624072 rs2302521 G A 296.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.316;DB;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9765;MLEAC=1;MLEAF=0.125;MQ=33.74;MQ0=0;MQRankSum=0.994;QD=14.14;ReadPosRankSum=0.775;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,11:21:99:333,0,306 0/0:36,0:36:93:0,93,1153 0/0:35,0:35:99:0,99,1228 0/0:26,0:26:60:0,60,695 +chr22 18209657 . G A,T 477.12 . AC=2,2;AF=0.250,0.250;AN=8;BaseQRankSum=-1.621;DP=113;Dels=0.00;FS=39.534;HaplotypeScore=5.4909;MLEAC=2,2;MLEAF=0.250,0.250;MQ=29.71;MQ0=0;MQRankSum=-0.463;QD=4.22;ReadPosRankSum=0.640;SB=-2.115e+02 GT:AD:DP:GQ:PL 0/2:22,1,9:32:99:227,229,563,0,306,310 0/2:17,3,9:29:82:178,136,270,0,82,116 0/1:26,5,3:34:28:82,0,365,28,290,399 0/1:12,3,3:18:22:70,0,209,22,149,231 +chr22 18300594 rs11704160 G A 1041.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.411;DB;DP=53;Dels=0.02;FS=1.633;HaplotypeScore=1.8984;MLEAC=5;MLEAF=0.625;MQ=31.72;MQ0=0;MQRankSum=0.435;QD=19.65;ReadPosRankSum=0.883;SB=-1.638e+02 GT:AD:DP:GQ:PL 0/1:6,4:11:99:131,0,173 0/1:3,8:11:80:249,0,80 1/1:3,14:17:42:510,42,0 0/1:6,6:13:36:197,0,36 +chr22 18354631 . G T 85.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.187;DP=55;Dels=0.02;FS=16.513;HaplotypeScore=4.8933;MLEAC=3;MLEAF=0.375;MQ=32.69;MQ0=0;MQRankSum=-0.448;QD=2.13;ReadPosRankSum=-0.448;SB=-2.831e-01 GT:AD:DP:GQ:PL 0/1:12,1:13:13:13,0,216 0/1:12,4:16:99:99,0,283 0/0:15,0:15:27:0,27,323 0/1:9,1:10:16:16,0,109 +chr22 18371971 . T C 272.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-6.957;DP=269;Dels=0.00;FS=48.817;HaplotypeScore=4.2090;MLEAC=3;MLEAF=0.375;MQ=36.46;MQ0=0;MQRankSum=-7.425;QD=1.19;ReadPosRankSum=1.973;SB=0.641 GT:AD:DP:GQ:PL 0/1:59,15:74:99:202,0,1537 0/1:60,10:70:72:72,0,1681 0/1:77,9:86:42:42,0,1994 0/0:35,4:39:17:0,17,826 +chr22 18656043 . T G 56.31 . AC=4;AF=0.667;AN=6;BaseQRankSum=-0.421;DP=11;Dels=0.00;FS=8.451;HaplotypeScore=0.4954;MLEAC=5;MLEAF=0.833;MQ=23.89;MQ0=0;MQRankSum=0.000;QD=6.26;ReadPosRankSum=-0.922;SB=33.01 GT:AD:DP:GQ:PL 0/1:2,1:3:18:18,0,26 1/1:0,2:2:6:58,6,0 0/1:3,1:4:19:19,0,46 ./. +chr22 18717851 rs615361 C T 40.30 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.537;DB;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.8993;MLEAC=6;MLEAF=0.750;MQ=19.78;MQ0=0;MQRankSum=0.406;QD=5.04;ReadPosRankSum=0.988;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,1:3:3:27,3,0 0/0:4,0:4:3:0,3,24 1/1:1,1:2:3:28,3,0 1/1:2,1:3:3:26,3,0 +chr22 18769734 . G A 38.29 . AC=3;AF=0.750;AN=4;BaseQRankSum=-0.653;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.4916;MLEAC=3;MLEAF=0.750;MQ=10.95;MQ0=0;MQRankSum=2.261;QD=1.82;ReadPosRankSum=2.563;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,1:6:3:29,3,0 ./. 0/1:13,2:15:21:44,0,21 ./. +chr22 18878489 rs62232301 C G 292.89 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.107;DB;DP=24;Dels=0.00;FS=10.809;HaplotypeScore=0.6698;MLEAC=8;MLEAF=1.00;MQ=18.15;MQ0=0;MQRankSum=1.904;QD=12.20;ReadPosRankSum=2.439;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,4:7:6:66,6,0 1/1:2,4:6:9:89,9,0 1/1:3,6:9:12:119,12,0 1/1:0,2:2:6:57,6,0 +chr22 18918761 . C A 130.49 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.801;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2279;MLEAC=4;MLEAF=0.500;MQ=33.53;MQ0=0;MQRankSum=-0.154;QD=1.81;ReadPosRankSum=1.403;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,1:10:18:18,0,159 0/1:12,4:16:70:70,0,390 0/1:22,2:24:2:2,0,529 0/1:18,4:22:81:81,0,313 +chr22 19130127 . A C 73 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.984;DP=150;Dels=0.00;FS=92.432;HaplotypeScore=1.9463;MLEAC=1;MLEAF=0.125;MQ=30.82;MQ0=0;MQRankSum=1.217;QD=2.28;ReadPosRankSum=-0.630;SB=-6.416e+00 GT:AD:DP:GQ:PL 0/0:38,1:39:57:0,57,1128 0/0:42,2:44:34:0,34,1057 0/0:33,2:35:20:0,20,986 0/1:27,5:32:99:109,0,574 +chr22 19227027 . A C 30.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.891;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7059;MLEAC=1;MLEAF=0.125;MQ=33.68;MQ0=0;MQRankSum=-0.793;QD=1.41;ReadPosRankSum=-0.930;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:25,1:26:38:0,38,756 0/0:24,0:24:51:0,51,609 0/0:28,0:28:57:0,57,683 0/1:19,3:22:67:67,0,284 +chr22 19420868 . T C 253.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.383;DP=63;Dels=0.00;FS=5.044;HaplotypeScore=1.7954;MLEAC=4;MLEAF=0.500;MQ=30.13;MQ0=0;MQRankSum=1.360;QD=4.03;ReadPosRankSum=0.832;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:99:106,0,127 0/1:18,2:20:50:50,0,201 0/1:11,2:13:52:52,0,184 0/1:13,3:16:88:88,0,178 +chr22 19471609 rs737858 A G 1353.32 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.024;DB;DP=52;Dels=0.00;FS=25.567;HaplotypeScore=0.4786;MLEAC=8;MLEAF=1.00;MQ=30.17;MQ0=0;MQRankSum=2.459;QD=26.03;ReadPosRankSum=1.110;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,11:13:30:368,30,0 0/1:3,11:14:1:243,0,1 1/1:2,12:14:36:437,36,0 1/1:1,10:11:30:344,30,0 +chr22 19902896 rs2073771 C T 177 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.689;DB;DP=14;Dels=0.00;FS=8.195;HaplotypeScore=1.2309;MLEAC=5;MLEAF=0.625;MQ=26.85;MQ0=0;MQRankSum=2.367;QD=16.09;ReadPosRankSum=2.141;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,5:6:15:174,15,0 0/0:3,0:3:3:0,3,32 0/1:2,1:3:23:24,0,23 0/1:1,1:2:19:24,0,19 +chr22 19912015 rs9306229 T C 346.48 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.480;DB;DP=19;Dels=0.00;FS=8.129;HaplotypeScore=0.9334;MLEAC=8;MLEAF=1.00;MQ=27.22;MQ0=0;MQRankSum=2.073;QD=18.24;ReadPosRankSum=-1.480;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,1:2:3:27,3,0 1/1:4,1:5:3:39,3,0 1/1:2,3:5:9:87,9,0 1/1:1,6:7:18:231,18,0 +chr22 19960530 . G T 307.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.657;DP=121;Dels=0.03;FS=0.000;HaplotypeScore=17.9191;MLEAC=3;MLEAF=0.375;MQ=24.69;MQ0=0;MQRankSum=-1.830;QD=3.24;ReadPosRankSum=3.939;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,7:28:92:92,0,536 0/0:24,1:25:20:0,20,356 0/1:30,10:41:99:179,0,398 0/1:16,7:23:80:80,0,99 +chr22 19961369 . C T 86.39 . AC=6;AF=0.750;AN=8;BaseQRankSum=2.488;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=3.4921;MLEAC=7;MLEAF=0.875;MQ=14.20;MQ0=0;MQRankSum=1.794;QD=5.40;ReadPosRankSum=-1.447;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:6:54,6,0 1/1:5,2:7:6:46,6,0 0/0:5,0:5:3:0,3,29 1/1:4,2:6:3:29,3,0 +chr22 19969156 . A G 210.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.187;DP=91;Dels=0.00;FS=33.731;HaplotypeScore=2.4561;MLEAC=4;MLEAF=0.500;MQ=32.49;MQ0=0;MQRankSum=0.172;QD=2.31;ReadPosRankSum=2.355;SB=-1.910e-02 GT:AD:DP:GQ:PL 0/1:14,3:17:80:80,0,266 0/1:20,2:22:27:27,0,274 0/1:27,3:30:43:43,0,431 0/1:17,5:22:99:103,0,262 +chr22 20100409 rs9606254 C T 89.17 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.547;DB;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.4350;MLEAC=1;MLEAF=0.125;MQ=29.84;MQ0=0;MQRankSum=-0.158;QD=7.43;ReadPosRankSum=0.293;SB=-1.180e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:9:0,9,110 0/1:8,4:12:12:125,0,12 0/0:16,0:16:48:0,48,591 0/0:12,0:12:27:0,27,348 +chr22 20611164 . C T 41.38 . AC=3;AF=0.500;AN=6;BaseQRankSum=2.181;DP=14;Dels=0.00;FS=7.160;HaplotypeScore=0.2980;MLEAC=3;MLEAF=0.500;MQ=16.56;MQ0=0;MQRankSum=-0.143;QD=3.45;ReadPosRankSum=0.466;SB=-7.031e-02 GT:AD:DP:GQ:PL 0/1:1,1:2:19:19,0,26 ./. 0/1:4,2:6:19:38,0,19 0/1:2,2:4:23:23,0,23 +chr22 20800935 . T G 49.18 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.457;DP=107;Dels=0.01;FS=21.587;HaplotypeScore=9.0743;MLEAC=4;MLEAF=0.500;MQ=23.85;MQ0=0;MQRankSum=0.636;QD=0.46;ReadPosRankSum=0.794;SB=-6.041e-01 GT:AD:DP:GQ:PL 0/1:20,5:25:44:44,0,226 0/1:28,3:31:14:14,0,373 0/1:26,2:28:9:9,0,273 0/1:19,2:22:24:24,0,180 +chr22 20804350 rs3810601 A T 473.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.699;DB;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.2811;MLEAC=3;MLEAF=0.375;MQ=30.99;MQ0=0;MQRankSum=-1.079;QD=17.55;ReadPosRankSum=-0.260;SB=-3.299e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:30:339,30,0 0/0:16,0:16:42:0,42,529 0/1:7,7:14:99:184,0,203 0/0:7,0:7:15:0,15,162 +chr22 20905354 . G A 35.24 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.060;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7877;MLEAC=2;MLEAF=0.250;MQ=34.70;MQ0=0;MQRankSum=-0.452;QD=3.92;ReadPosRankSum=0.854;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:7:12:0,12,152 0/0:7,0:7:12:0,12,151 0/0:6,0:6:15:0,15,200 1/1:6,3:9:9:78,9,0 +chr22 20929286 rs165842 C G 148 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.828;DB;DP=73;Dels=0.00;FS=2.874;HaplotypeScore=0.1972;MLEAC=1;MLEAF=0.125;MQ=34.53;MQ0=0;MQRankSum=-0.602;QD=8.71;ReadPosRankSum=-0.151;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,7:17:99:184,0,232 0/0:18,0:18:39:0,39,500 0/0:26,0:26:60:0,60,734 0/0:12,0:12:24:0,24,322 +chr22 20967845 . T C 142.94 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.448;DP=54;Dels=0.02;FS=5.192;HaplotypeScore=5.0279;MLEAC=3;MLEAF=0.375;MQ=24.15;MQ0=0;MQRankSum=-0.933;QD=3.76;ReadPosRankSum=1.448;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:10,4:14:91:91,0,131 0/0:14,2:16:24:0,24,240 0/1:12,1:13:17:17,0,103 0/1:6,4:10:75:78,0,75 +chr22 20977077 rs564493 C A 583.39 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.774;DB;DP=32;Dels=0.00;FS=4.627;HaplotypeScore=0.4161;MLEAC=6;MLEAF=0.750;MQ=30.12;MQ0=0;MQRankSum=-0.446;QD=24.31;ReadPosRankSum=0.821;SB=-9.615e+01 GT:AD:DP:GQ:PL 0/0:7,1:8:18:0,18,229 1/1:0,7:7:21:253,21,0 1/1:2,7:9:15:127,15,0 1/1:1,7:8:21:255,21,0 +chr22 21008167 rs635095 A G 143.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.180;DB;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7458;MLEAC=3;MLEAF=0.375;MQ=31.25;MQ0=0;MQRankSum=-0.817;QD=7.19;ReadPosRankSum=0.696;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:24:0,24,296 0/1:5,2:7:42:42,0,117 0/1:5,4:9:79:112,0,79 0/1:3,1:4:33:33,0,57 +chr22 21045471 . A C 88.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.712;DP=175;Dels=0.01;FS=52.241;HaplotypeScore=6.0618;MLEAC=4;MLEAF=0.500;MQ=19.18;MQ0=0;MQRankSum=2.337;QD=0.51;ReadPosRankSum=-0.229;SB=-1.960e+00 GT:AD:DP:GQ:PL 0/1:44,5:49:2:2,0,460 0/1:44,2:46:12:12,0,361 0/1:40,3:43:36:36,0,209 0/1:31,4:35:79:79,0,148 +chr22 21075537 rs5751800 A C 790.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.355;DB;DP=134;Dels=0.01;FS=1.710;HaplotypeScore=3.3617;MLEAC=3;MLEAF=0.375;MQ=34.11;MQ0=0;MQRankSum=-3.425;QD=8.32;ReadPosRankSum=0.783;SB=-3.200e+02 GT:AD:DP:GQ:PL 0/1:14,14:28:99:388,0,348 0/0:39,0:39:87:0,87,1041 0/1:30,7:37:99:147,0,825 0/1:16,12:28:99:299,0,294 +chr22 21096468 . C A 88.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.393;DP=146;Dels=0.02;FS=72.754;HaplotypeScore=2.8960;MLEAC=1;MLEAF=0.125;MQ=35.98;MQ0=0;MQRankSum=-4.889;QD=2.70;ReadPosRankSum=0.724;SB=-7.100e+00 GT:AD:DP:GQ:PL 0/0:41,2:43:45:0,45,1175 0/0:29,2:31:36:0,36,907 0/0:35,1:36:90:0,90,1218 0/1:25,8:33:99:125,0,643 +chr22 21101924 . T A 105.85 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.620;DP=133;Dels=0.00;FS=107.665;HaplotypeScore=18.2036;MLEAC=3;MLEAF=0.375;MQ=29.58;MQ0=0;MQRankSum=-1.130;QD=1.06;ReadPosRankSum=1.860;SB=-2.277e+00 GT:AD:DP:GQ:PL 0/1:21,3:24:25:25,0,324 0/1:35,6:41:89:89,0,636 0/1:32,3:35:33:33,0,565 0/0:28,3:33:3:0,3,617 +chr22 21104326 . C G 56.15 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.879;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.6418;MLEAC=2;MLEAF=0.250;MQ=39.55;MQ0=0;MQRankSum=-3.340;QD=1.19;ReadPosRankSum=-3.127;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,2:24:14:14,0,560 0/0:26,0:26:57:0,57,774 0/0:19,1:20:19:0,19,661 0/1:18,4:23:83:83,0,392 +chr22 21138181 . A G 119.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.442;DP=103;Dels=0.02;FS=0.000;HaplotypeScore=53.0932;MLEAC=4;MLEAF=0.500;MQ=25.92;MQ0=0;MQRankSum=-0.760;QD=1.16;ReadPosRankSum=0.323;SB=-1.297e-02 GT:AD:DP:GQ:PL 0/1:21,6:28:72:72,0,302 0/1:26,3:29:38:38,0,240 0/1:19,3:24:20:20,0,170 0/1:18,2:20:32:32,0,154 +chr22 21213380 rs1061063 C T 176.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.803;DB;DP=21;Dels=0.00;FS=5.798;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=29.10;MQ0=0;MQRankSum=0.042;QD=9.31;ReadPosRankSum=-0.380;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,32 1/1:3,2:5:6:71,6,0 0/1:7,2:9:57:57,0,135 0/1:2,3:5:65:92,0,65 +chr22 21327747 . C G 40.93 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.050;DP=29;Dels=0.00;FS=2.671;HaplotypeScore=0.6520;MLEAC=3;MLEAF=0.500;MQ=31.73;MQ0=0;MQRankSum=0.750;QD=1.78;ReadPosRankSum=-0.950;SB=-4.996e-01 GT:AD:DP:GQ:PL 0/1:9,1:10:8:8,0,240 ./. 0/1:5,1:6:22:22,0,66 0/1:5,2:7:49:49,0,108 +chr22 21369539 . A T 84.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.945;DP=188;Dels=0.01;FS=4.423;HaplotypeScore=6.0647;MLEAC=3;MLEAF=0.375;MQ=18.20;MQ0=0;MQRankSum=3.001;QD=0.60;ReadPosRankSum=0.373;SB=-1.622e-02 GT:AD:DP:GQ:PL 0/1:40,2:42:32:32,0,125 0/1:36,2:38:30:30,0,169 0/1:57,4:61:66:66,0,312 0/0:45,1:46:48:0,48,524 +chr22 21372374 rs55763104 G A 432.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.508;DB;DP=134;Dels=0.01;FS=2.431;HaplotypeScore=1.6833;MLEAC=2;MLEAF=0.250;MQ=24.82;MQ0=0;MQRankSum=0.505;QD=6.76;ReadPosRankSum=0.598;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,16:32:99:207,0,225 0/1:17,14:31:99:267,0,171 0/0:38,0:38:63:0,63,724 0/0:32,0:32:48:0,48,543 +chr22 21480127 . T G 153.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.077;DP=141;Dels=0.00;FS=3.320;HaplotypeScore=6.4227;MLEAC=4;MLEAF=0.500;MQ=17.98;MQ0=0;MQRankSum=0.069;QD=1.09;ReadPosRankSum=0.864;SB=-4.588e+01 GT:AD:DP:GQ:PL 0/1:20,4:24:35:35,0,68 0/1:29,7:36:82:82,0,165 0/1:32,8:40:29:29,0,157 0/1:36,5:41:50:50,0,314 +chr22 21901347 . G T 51.26 . AC=6;AF=1.00;AN=6;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=21.25;MQ0=0;QD=12.81;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:30,3,0 1/1:0,2:2:3:23,3,0 1/1:0,1:1:3:33,3,0 ./. +chr22 21989071 . C T 140.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.977;DP=165;Dels=0.00;FS=89.707;HaplotypeScore=21.3594;MLEAC=3;MLEAF=0.375;MQ=27.99;MQ0=0;MQRankSum=2.128;QD=1.08;ReadPosRankSum=-0.709;SB=-1.632e+00 GT:AD:DP:GQ:PL 0/0:34,1:35:23:0,23,625 0/1:39,9:48:99:138,0,734 0/1:32,2:34:3:3,0,623 0/1:42,6:48:40:40,0,665 +chr22 22036832 rs1669112 T C 66.29 . AC=5;AF=0.833;AN=6;BaseQRankSum=2.017;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=20.23;MQ0=0;MQRankSum=0.922;QD=4.42;ReadPosRankSum=-0.922;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,2:5:6:56,6,0 1/1:3,1:4:3:23,3,0 0/1:5,1:6:26:26,0,41 ./. +chr22 22313834 . G A 292.55 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.168;DP=60;Dels=0.02;FS=8.028;HaplotypeScore=0.9311;MLEAC=5;MLEAF=0.625;MQ=24.72;MQ0=0;MQRankSum=3.142;QD=4.88;ReadPosRankSum=0.301;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:47:125,0,47 1/1:8,4:12:9:76,9,0 0/1:12,4:16:33:86,0,33 0/1:16,3:19:50:50,0,116 +chr22 22348732 . G C 256.65 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.955;DP=119;Dels=0.01;FS=34.502;HaplotypeScore=16.8747;MLEAC=4;MLEAF=0.500;MQ=29.08;MQ0=0;MQRankSum=-2.802;QD=2.16;ReadPosRankSum=3.299;SB=-7.889e-02 GT:AD:DP:GQ:PL 0/1:27,4:31:64:64,0,387 0/1:30,4:34:63:63,0,295 0/1:27,8:35:99:155,0,334 0/1:15,2:18:17:17,0,262 +chr22 22556270 rs5995639 T C 324.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.785;DB;DP=95;Dels=0.00;FS=10.025;HaplotypeScore=1.1907;MLEAC=3;MLEAF=0.375;MQ=25.96;MQ0=0;MQRankSum=-1.459;QD=4.78;ReadPosRankSum=-1.367;SB=-9.756e-03 GT:AD:DP:GQ:PL 0/1:13,8:21:99:125,0,167 0/0:26,1:27:34:0,34,636 0/1:13,7:20:99:122,0,211 0/1:17,10:27:99:121,0,242 +chr22 22569554 rs6001413 C A 1119.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.540;DB;DP=138;Dels=0.00;FS=2.663;HaplotypeScore=1.9130;MLEAC=3;MLEAF=0.375;MQ=30.66;MQ0=0;MQRankSum=-0.686;QD=10.56;ReadPosRankSum=0.371;SB=-4.000e+02 GT:AD:DP:GQ:PL 0/0:32,0:32:87:0,87,1061 0/1:19,17:36:99:417,0,427 0/1:25,12:37:99:305,0,563 0/1:16,17:33:99:441,0,247 +chr22 22681935 . C A,G 37.25 . AC=3,2;AF=0.500,0.333;AN=6;BaseQRankSum=-2.211;DP=126;Dels=0.00;FS=9.295;HaplotypeScore=0.9914;MLEAC=3,2;MLEAF=0.500,0.333;MQ=12.34;MQ0=0;MQRankSum=3.340;QD=0.38;ReadPosRankSum=-1.120;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 2/2:33,0,2:35:6:58,58,58,6,6,0 0/1:29,1,0:30:23:23,0,44,29,47,76 1/1:30,1,1:32:3:29,3,0,29,3,29 +chr22 22724135 rs11324703 GT G 1371.59 . AC=5;AF=0.625;AN=8;BaseQRankSum=-3.569;DB;DP=106;FS=0.000;HaplotypeScore=8.4226;MLEAC=5;MLEAF=0.625;MQ=22.97;MQ0=0;MQRankSum=-3.068;QD=12.94;RPA=8,7;RU=T;ReadPosRankSum=3.975;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 0/1:10,12:14:2:301,0,2 1/1:13,12:14:5:309,5,0 0/1:16,12:21:21:421,0,21 0/1:14,15:18:11:391,0,11 +chr22 22764438 . T A 214.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.413;DP=180;Dels=0.00;FS=20.665;HaplotypeScore=1.1865;MLEAC=2;MLEAF=0.250;MQ=20.92;MQ0=0;MQRankSum=4.202;QD=2.33;ReadPosRankSum=-2.090;SB=0.951 GT:AD:DP:GQ:PL 0/0:43,0:43:18:0,18,210 0/1:48,4:52:64:64,0,195 0/0:44,1:45:4:0,4,237 0/1:33,7:40:41:191,0,41 +chr22 22804762 . G T 34.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.697;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8212;MLEAC=3;MLEAF=0.375;MQ=22.04;MQ0=0;MQRankSum=2.294;QD=0.63;ReadPosRankSum=-0.653;SB=0.246 GT:AD:DP:GQ:PL 0/1:12,1:13:19:19,0,70 0/1:22,1:23:20:20,0,75 0/1:16,2:18:38:38,0,68 0/0:12,0:12:12:0,12,124 +chr22 22869218 rs362132 T C 3595.01 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.043;DB;DP=156;Dels=0.01;FS=0.739;HaplotypeScore=5.7289;MLEAC=7;MLEAF=0.875;MQ=32.37;MQ0=0;MQRankSum=-3.536;QD=23.04;ReadPosRankSum=0.010;SB=-1.727e+03 GT:AD:DP:GQ:PL 0/1:31,16:47:99:460,0,864 1/1:5,33:38:96:1121,96,0 1/1:4,40:44:99:1361,117,0 1/1:5,20:25:57:653,57,0 +chr22 22892655 . G A 100.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-5.799;DP=170;Dels=0.00;FS=111.707;HaplotypeScore=6.7596;MLEAC=3;MLEAF=0.375;MQ=34.85;MQ0=0;MQRankSum=-5.475;QD=0.81;ReadPosRankSum=3.195;SB=0.750 GT:AD:DP:GQ:PL 0/1:35,7:42:84:84,0,908 0/1:29,6:35:31:31,0,713 0/1:43,5:48:29:29,0,1126 0/0:39,6:45:25:0,25,1159 +chr22 23011026 . C G 38.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.387;DP=238;Dels=0.00;FS=41.622;HaplotypeScore=13.7866;MLEAC=3;MLEAF=0.375;MQ=19.67;MQ0=0;MQRankSum=-2.826;QD=0.22;ReadPosRankSum=-2.504;SB=-1.832e+01 GT:AD:DP:GQ:PL 0/1:45,7:52:35:35,0,516 0/0:57,5:62:35:0,35,475 0/1:46,9:56:19:19,0,401 0/1:57,11:68:28:28,0,498 +chr22 23982499 . A C 31.81 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.731;DP=82;Dels=0.00;FS=2.637;HaplotypeScore=1.7997;MLEAC=2;MLEAF=0.250;MQ=25.56;MQ0=0;MQRankSum=1.429;QD=0.71;ReadPosRankSum=-1.461;SB=0.874 GT:AD:DP:GQ:PL 0/1:20,2:23:52:52,0,71 0/1:21,1:22:21:21,0,127 0/0:18,0:18:18:0,18,195 0/0:19,0:19:15:0,15,144 +chr22 24057485 rs8143019 C T 96.39 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.372;DB;DP=30;Dels=0.00;FS=2.627;HaplotypeScore=1.4430;MLEAC=1;MLEAF=0.125;MQ=24.26;MQ0=0;MQRankSum=1.992;QD=13.77;ReadPosRankSum=0.538;SB=0.146 GT:AD:DP:GQ:PL 0/1:3,4:7:55:132,0,55 0/0:8,0:8:9:0,9,115 0/0:8,0:8:12:0,12,126 0/0:7,0:7:9:0,9,99 +chr22 24123492 . T G 103.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.927;DP=50;Dels=0.00;FS=2.817;HaplotypeScore=5.1314;MLEAC=4;MLEAF=0.500;MQ=23.59;MQ0=0;MQRankSum=-1.591;QD=2.07;ReadPosRankSum=2.526;SB=-4.208e-01 GT:AD:DP:GQ:PL 0/1:4,4:9:43:93,0,43 0/1:9,3:12:11:11,0,76 0/1:14,2:16:6:6,0,163 0/1:10,3:13:35:35,0,86 +chr22 24167689 . T A 61.58 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.934;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3244;MLEAC=1;MLEAF=0.125;MQ=34.74;MQ0=0;MQRankSum=-1.125;QD=3.85;ReadPosRankSum=-0.743;SB=-6.083e-03 GT:AD:DP:GQ:PL 0/1:12,4:16:97:97,0,222 0/0:15,0:15:24:0,24,310 0/0:19,0:19:45:0,45,529 0/0:4,0:4:3:0,3,32 +chr22 24313360 . A C 87.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.074;DP=57;Dels=0.00;FS=8.243;HaplotypeScore=9.9881;MLEAC=4;MLEAF=0.500;MQ=20.40;MQ0=0;MQRankSum=0.994;QD=1.54;ReadPosRankSum=4.270;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1:8:16:16,0,44 0/1:9,4:13:19:19,0,42 0/1:12,3:16:37:63,0,37 0/1:17,3:20:32:32,0,68 +chr22 24445629 . T C 60.23 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.069;DP=158;Dels=0.00;FS=14.815;HaplotypeScore=3.3544;MLEAC=1;MLEAF=0.125;MQ=32.42;MQ0=0;MQRankSum=-1.700;QD=1.54;ReadPosRankSum=-0.400;SB=-5.124e+00 GT:AD:DP:GQ:PL 0/0:35,3:38:7:0,7,813 0/1:33,6:39:96:96,0,701 0/0:41,1:42:67:0,67,1011 0/0:38,1:39:36:0,36,813 +chr22 24479177 . A C 83.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.995;DP=90;Dels=0.00;FS=44.995;HaplotypeScore=9.4556;MLEAC=3;MLEAF=0.375;MQ=31.56;MQ0=0;MQRankSum=-1.975;QD=1.25;ReadPosRankSum=0.276;SB=0.581 GT:AD:DP:GQ:PL 0/1:18,4:22:66:66,0,531 0/0:22,1:23:57:0,57,704 0/1:24,3:27:26:26,0,519 0/1:15,3:18:35:35,0,294 +chr22 24480503 rs4820581 G A 4115.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.945;DB;DP=129;Dels=0.00;FS=16.267;HaplotypeScore=1.1965;MLEAC=8;MLEAF=1.00;MQ=32.30;MQ0=0;MQRankSum=-0.087;QD=31.90;ReadPosRankSum=1.437;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,29:30:84:1056,84,0 1/1:4,38:42:37:1182,37,0 1/1:0,37:37:99:1291,108,0 1/1:0,20:20:48:586,48,0 +chr22 24560472 . G T 206.08 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.157;DP=49;Dels=0.02;FS=15.428;HaplotypeScore=12.3803;MLEAC=4;MLEAF=0.500;MQ=22.09;MQ0=0;MQRankSum=-0.814;QD=4.21;ReadPosRankSum=1.071;SB=-3.850e-01 GT:AD:DP:GQ:PL 0/1:5,5:10:62:93,0,62 0/1:9,5:14:62:97,0,62 0/1:12,3:15:9:9,0,187 0/1:6,3:9:15:49,0,15 +chr22 24562762 . A C 203.69 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.000;DP=55;Dels=0.02;FS=5.686;HaplotypeScore=5.7575;MLEAC=4;MLEAF=0.500;MQ=19.99;MQ0=0;MQRankSum=2.516;QD=3.70;ReadPosRankSum=3.331;SB=0.032 GT:AD:DP:GQ:PL 0/1:12,4:16:39:67,0,39 0/1:11,3:14:29:42,0,29 0/1:11,3:14:60:65,0,60 0/1:7,3:10:13:72,0,13 +chr22 24580675 . A C 102.61 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.954;DP=30;Dels=0.00;FS=7.160;HaplotypeScore=6.2043;MLEAC=6;MLEAF=0.750;MQ=17.17;MQ0=0;MQRankSum=2.281;QD=3.42;ReadPosRankSum=-1.656;SB=0.412 GT:AD:DP:GQ:PL 0/1:4,3:7:13:67,0,13 1/1:4,1:5:3:26,3,0 1/1:8,2:10:3:27,3,0 0/1:7,1:8:16:24,0,16 +chr22 24734417 . C A 96.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.841;DP=235;Dels=0.00;FS=19.763;HaplotypeScore=1.4673;MLEAC=1;MLEAF=0.125;MQ=32.21;MQ0=0;MQRankSum=-0.952;QD=1.62;ReadPosRankSum=-1.442;SB=-3.982e-03 GT:AD:DP:GQ:PL 0/0:53,1:54:91:0,91,1314 0/0:52,2:54:61:0,61,1286 0/0:65,2:67:99:0,109,1811 0/1:51,8:60:99:133,0,1262 +chr22 24939731 . G T 454.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.887;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=6.2152;MLEAC=4;MLEAF=0.500;MQ=30.84;MQ0=0;MQRankSum=-3.289;QD=6.99;ReadPosRankSum=0.265;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,3:7:62:62,0,144 0/1:9,8:17:99:139,0,207 0/1:15,7:22:99:135,0,360 0/1:11,7:18:99:161,0,196 +chr22 25016523 . G A 68.04 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.950;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.333;MQ=17.00;MQ0=0;MQRankSum=1.528;QD=5.67;ReadPosRankSum=1.107;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,1:6:26:32,0,26 ./. 0/1:3,3:6:43:73,0,43 0/0:4,1:5:3:0,3,36 +chr22 25053993 . C G 36.60 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.178;DP=88;Dels=0.00;FS=15.631;HaplotypeScore=3.4082;MLEAC=3;MLEAF=0.375;MQ=13.63;MQ0=0;MQRankSum=2.216;QD=0.52;ReadPosRankSum=-3.254;SB=-1.752e+01 GT:AD:DP:GQ:PL 0/0:17,1:18:12:0,12,118 0/1:23,1:24:26:26,0,26 0/1:21,2:23:11:11,0,111 0/1:21,2:23:42:42,0,75 +chr22 25158326 rs5751975 A G 1516.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.295;DB;DP=87;Dels=0.00;FS=4.432;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=37.95;MQ0=0;MQRankSum=-0.166;QD=17.43;ReadPosRankSum=2.797;SB=-3.901e+01 GT:AD:DP:GQ:PL 1/1:1,19:20:57:759,57,0 0/1:13,9:22:99:293,0,463 0/1:14,9:23:99:299,0,468 0/1:15,7:22:99:211,0,470 +chr22 25264750 . T G 50.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.637;DP=284;Dels=0.00;FS=20.070;HaplotypeScore=5.5436;MLEAC=1;MLEAF=0.125;MQ=34.01;MQ0=0;MQRankSum=0.097;QD=0.68;ReadPosRankSum=0.373;SB=0.054 GT:AD:DP:GQ:PL 0/0:63,2:65:58:0,58,1381 0/0:70,2:72:73:0,73,1400 0/0:70,2:72:99:0,127,1784 0/1:69,6:75:87:87,0,1113 +chr22 25627667 . C A 312.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.075;DP=139;Dels=0.01;FS=32.829;HaplotypeScore=24.0056;MLEAC=4;MLEAF=0.500;MQ=23.11;MQ0=0;MQRankSum=3.525;QD=2.25;ReadPosRankSum=-0.785;SB=-1.193e-02 GT:AD:DP:GQ:PL 0/1:23,7:31:99:121,0,302 0/1:30,5:36:99:128,0,245 0/1:35,4:40:64:64,0,358 0/1:29,2:31:42:42,0,123 +chr22 26040508 . T C 131.38 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.627;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=3.1773;MLEAC=5;MLEAF=0.833;MQ=19.07;MQ0=0;MQRankSum=3.165;QD=4.87;ReadPosRankSum=2.177;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:5,5:10:7:109,0,7 1/1:6,1:7:3:27,3,0 1/1:7,2:9:3:32,3,0 +chr22 26063718 . G T 177.11 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.710;DP=62;Dels=0.02;FS=16.555;HaplotypeScore=1.4777;MLEAC=4;MLEAF=0.500;MQ=33.06;MQ0=0;MQRankSum=-1.874;QD=4.54;ReadPosRankSum=0.164;SB=2.27 GT:AD:DP:GQ:PL 0/1:12,4:16:83:83,0,188 0/1:14,3:17:55:55,0,284 0/0:22,1:23:25:0,25,546 1/1:2,3:5:9:86,9,0 +chr22 26181435 . T G 47.58 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.745;DP=45;Dels=0.00;FS=38.065;HaplotypeScore=4.6027;MLEAC=3;MLEAF=0.375;MQ=30.38;MQ0=0;MQRankSum=-1.604;QD=1.40;ReadPosRankSum=1.830;SB=2.15 GT:AD:DP:GQ:PL 0/1:6,3:9:63:63,0,112 0/0:11,0:11:21:0,21,266 0/1:9,1:10:5:5,0,186 0/1:13,2:15:21:21,0,89 +chr22 26193824 rs2877299 C T 482.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.317;DB;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.6944;MLEAC=4;MLEAF=0.500;MQ=34.40;MQ0=0;MQRankSum=-2.820;QD=4.98;ReadPosRankSum=-0.605;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,3:27:32:32,0,688 0/1:21,5:26:99:120,0,550 0/1:12,7:19:99:213,0,375 0/1:17,8:25:99:160,0,419 +chr22 26224695 . T A 34.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.819;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=3.1625;MLEAC=2;MLEAF=0.250;MQ=33.48;MQ0=0;MQRankSum=-2.803;QD=0.79;ReadPosRankSum=-2.917;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,4:21:58:58,0,414 0/0:23,1:24:13:0,13,483 0/0:27,1:28:35:0,35,714 0/1:21,2:23:18:18,0,467 +chr22 26243388 . T C 157.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.566;DP=151;Dels=0.01;FS=122.180;HaplotypeScore=5.2903;MLEAC=2;MLEAF=0.250;MQ=34.93;MQ0=0;MQRankSum=0.963;QD=2.05;ReadPosRankSum=0.523;SB=-3.179e+00 GT:AD:DP:GQ:PL 0/1:31,8:39:99:157,0,989 0/0:35,2:37:47:0,47,871 0/0:34,2:36:0:0,0,756 0/1:35,3:38:40:40,0,819 +chr22 26273834 rs4822666 A C 142.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.180;DB;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=1.7904;MLEAC=4;MLEAF=0.500;MQ=26.50;MQ0=0;MQRankSum=-1.569;QD=5.09;ReadPosRankSum=-0.077;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,6:11:58:58,0,72 0/1:4,3:7:50:50,0,151 0/1:4,2:6:51:51,0,84 0/1:2,1:3:26:26,0,50 +chr22 26777951 rs601548 T G 497.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.010;DB;DP=274;Dels=0.00;FS=0.000;HaplotypeScore=1.2430;MLEAC=1;MLEAF=0.125;MQ=42.75;MQ0=0;MQRankSum=-0.785;QD=8.59;ReadPosRankSum=0.576;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:41,17:58:99:534,0,1455 0/0:84,0:84:99:0,250,3483 0/0:97,0:97:99:0,283,3841 0/0:35,0:35:99:0,102,1364 +chr22 26848382 . GC G 73.82 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.560;DP=134;FS=23.716;HaplotypeScore=81.8180;MLEAC=3;MLEAF=0.375;MQ=20.76;MQ0=0;MQRankSum=-0.224;QD=0.72;ReadPosRankSum=-2.599;SB=1.48 GT:AD:DP:GQ:PL 0/0:28,2:20:21:0,21,552 0/1:27,5:14:4:4,0,251 0/1:26,7:16:80:80,0,357 0/1:30,1:16:40:40,0,228 +chr22 26932379 . G T 161.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.948;DP=83;Dels=0.00;FS=12.914;HaplotypeScore=18.9283;MLEAC=4;MLEAF=0.500;MQ=22.93;MQ0=0;MQRankSum=-0.030;QD=1.95;ReadPosRankSum=1.128;SB=-1.336e-02 GT:AD:DP:GQ:PL 0/1:24,4:28:36:36,0,298 0/1:17,4:21:44:96,0,44 0/1:16,2:20:37:37,0,158 0/1:12,2:14:35:35,0,139 +chr22 28378472 rs5762430 A G 513.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.443;DB;DP=81;Dels=0.00;FS=2.314;HaplotypeScore=1.5501;MLEAC=3;MLEAF=0.375;MQ=34.67;MQ0=0;MQRankSum=-0.035;QD=9.17;ReadPosRankSum=-0.419;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:9,4:13:93:93,0,288 0/0:25,0:25:69:0,69,883 0/1:15,10:26:99:319,0,432 0/1:12,5:17:99:145,0,245 +chr22 28504237 . C A 96.35 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.180;DP=79;Dels=0.00;FS=45.924;HaplotypeScore=4.1217;MLEAC=3;MLEAF=0.375;MQ=26.64;MQ0=0;MQRankSum=0.199;QD=1.42;ReadPosRankSum=0.769;SB=0.601 GT:AD:DP:GQ:PL 0/1:14,4:19:99:108,0,149 0/1:21,2:23:19:19,0,377 0/0:11,0:11:18:0,18,200 0/1:23,3:26:12:12,0,430 +chr22 29412257 rs2064084 T C 38.01 . AC=4;AF=1.00;AN=4;DB;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=14.56;MQ0=0;QD=9.50;SB=-3.100e+01 GT:AD:DP:GQ:PL 1/1:0,1:1:3:34,3,0 1/1:2,1:3:3:37,3,0 ./. ./. +chr22 29449477 rs2294239 A G 928.56 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.346;DB;DP=85;Dels=0.01;FS=5.356;HaplotypeScore=0.7460;MLEAC=4;MLEAF=0.500;MQ=35.55;MQ0=0;MQRankSum=-0.716;QD=14.51;ReadPosRankSum=1.152;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,16:17:48:642,48,0 0/0:21,0:21:57:0,57,783 0/1:18,9:27:99:247,0,508 0/1:14,5:19:88:88,0,389 +chr22 29628346 . C T 30.69 . AC=4;AF=0.667;AN=6;BaseQRankSum=1.031;DP=27;Dels=0.00;FS=5.746;HaplotypeScore=2.7467;MLEAC=4;MLEAF=0.667;MQ=16.68;MQ0=0;MQRankSum=0.424;QD=2.19;ReadPosRankSum=-1.273;SB=1.35 GT:AD:DP:GQ:PL ./. 1/1:6,2:8:6:48,6,0 0/0:7,1:8:6:0,6,49 1/1:5,1:6:3:23,3,0 +chr22 29669693 rs4820804 T C 860.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.675;DB;DP=97;Dels=0.00;FS=7.669;HaplotypeScore=2.7292;MLEAC=3;MLEAF=0.375;MQ=33.81;MQ0=0;MQRankSum=1.563;QD=11.63;ReadPosRankSum=1.304;SB=-1.181e-02 GT:AD:DP:GQ:PL 0/0:23,0:23:60:0,60,737 0/1:18,14:32:99:444,0,398 0/1:13,7:20:99:216,0,256 0/1:14,8:22:99:244,0,308 +chr22 29710058 . A G 42.59 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.701;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.5758;MLEAC=2;MLEAF=0.250;MQ=26.76;MQ0=0;MQRankSum=-1.113;QD=2.37;ReadPosRankSum=1.938;SB=15.07 GT:AD:DP:GQ:PL 0/0:5,1:6:3:0,3,22 1/1:3,3:7:6:60,6,0 0/0:11,0:11:15:0,15,164 0/1:9,2:11:26:26,0,95 +chr22 29746253 rs737883 T C 568.76 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.533;DB;DP=61;Dels=0.00;FS=8.406;HaplotypeScore=1.1567;MLEAC=5;MLEAF=0.625;MQ=31.68;MQ0=0;MQRankSum=-0.043;QD=9.32;ReadPosRankSum=1.100;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,9:11:27:321,27,0 0/1:18,3:21:38:38,0,326 0/1:8,8:16:99:244,0,222 0/1:12,1:13:11:11,0,206 +chr22 29828532 . G A 69.96 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.142;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7381;MLEAC=4;MLEAF=0.500;MQ=24.89;MQ0=0;MQRankSum=0.698;QD=3.89;ReadPosRankSum=-3.055;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:3:0,3,42 0/1:6,1:7:14:14,0,134 0/1:6,2:8:33:46,0,33 1/1:1,2:3:6:53,6,0 +chr22 29904454 . G C 62.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.809;DP=110;Dels=0.00;FS=18.979;HaplotypeScore=0.9561;MLEAC=1;MLEAF=0.125;MQ=36.89;MQ0=0;MQRankSum=-2.354;QD=2.86;ReadPosRankSum=-2.823;SB=1.972e-03 GT:AD:DP:GQ:PL 0/0:31,0:31:90:0,90,1171 0/0:26,0:26:54:0,54,713 0/0:30,1:31:59:0,59,1006 0/1:17,5:22:99:99,0,535 +chr22 29966146 . C A 155.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.557;DP=74;Dels=0.00;FS=34.066;HaplotypeScore=9.2611;MLEAC=4;MLEAF=0.500;MQ=30.39;MQ0=0;MQRankSum=-2.802;QD=2.10;ReadPosRankSum=0.907;SB=0.183 GT:AD:DP:GQ:PL 0/1:16,3:20:59:59,0,238 0/1:14,3:17:21:21,0,330 0/1:20,3:23:72:72,0,126 0/1:10,3:14:46:46,0,56 +chr22 30198190 . C G 83.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.222;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=23.5291;MLEAC=3;MLEAF=0.375;MQ=19.94;MQ0=0;MQRankSum=2.062;QD=1.66;ReadPosRankSum=-1.902;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:51:51,0,51 0/1:15,2:17:53:53,0,73 0/1:16,1:17:17:21,0,17 0/0:11,1:12:6:0,6,53 +chr22 30202984 rs12627866 T C 71.71 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.102;DB;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.2496;MLEAC=3;MLEAF=0.375;MQ=25.59;MQ0=0;MQRankSum=-0.768;QD=5.52;ReadPosRankSum=1.169;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:5,0:5:9:0,9,120 0/0:5,1:6:9:0,9,89 1/1:1,2:3:6:70,6,0 0/1:6,4:10:46:46,0,152 +chr22 30412712 . T A 263.95 . AC=4;AF=0.500;AN=8;BaseQRankSum=-5.614;DP=246;Dels=0.02;FS=4.387;HaplotypeScore=16.2963;MLEAC=4;MLEAF=0.500;MQ=31.97;MQ0=0;MQRankSum=-5.821;QD=1.07;ReadPosRankSum=5.185;SB=-1.824e-01 GT:AD:DP:GQ:PL 0/1:60,11:71:99:128,0,1679 0/1:48,11:59:99:146,0,1174 0/1:62,8:70:22:22,0,1555 0/1:35,7:42:10:10,0,927 +chr22 30418149 . C G 79.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.303;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4546;MLEAC=3;MLEAF=0.375;MQ=30.69;MQ0=0;MQRankSum=-1.381;QD=1.01;ReadPosRankSum=-2.664;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:22,4:26:74:74,0,301 0/1:27,3:30:25:25,0,588 0/0:30,2:32:35:0,35,659 0/1:21,2:23:24:24,0,256 +chr22 30418161 rs41168 A C 2272.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.978;DB;DP=106;Dels=0.00;FS=17.426;HaplotypeScore=1.2204;MLEAC=7;MLEAF=0.875;MQ=29.62;MQ0=0;MQRankSum=-0.466;QD=21.44;ReadPosRankSum=1.933;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,23:26:69:776,69,0 0/1:23,8:31:99:204,0,639 1/1:0,27:27:78:878,78,0 1/1:7,15:22:42:459,42,0 +chr22 30659878 . G C 92.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.713;DP=85;Dels=0.00;FS=2.496;HaplotypeScore=21.5621;MLEAC=2;MLEAF=0.250;MQ=21.61;MQ0=0;MQRankSum=0.643;QD=2.50;ReadPosRankSum=0.609;SB=0.102 GT:AD:DP:GQ:PL 0/1:9,3:13:19:60,0,19 0/0:23,0:23:21:0,21,210 0/0:21,2:25:18:0,18,179 0/1:19,3:24:74:74,0,84 +chr22 30683280 . G T 40.96 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.293;DP=106;Dels=0.00;FS=3.261;HaplotypeScore=11.3924;MLEAC=1;MLEAF=0.125;MQ=31.65;MQ0=0;MQRankSum=-1.935;QD=1.58;ReadPosRankSum=-1.121;SB=-1.130e+01 GT:AD:DP:GQ:PL 0/1:22,4:26:76:76,0,432 0/0:28,2:30:28:0,28,604 0/0:34,2:36:13:0,13,723 0/0:13,1:14:1:0,1,216 +chr22 30683285 rs5753058 C G 193 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.569;DB;DP=111;Dels=0.00;FS=3.484;HaplotypeScore=10.5932;MLEAC=1;MLEAF=0.125;MQ=31.68;MQ0=0;MQRankSum=-0.324;QD=5.85;ReadPosRankSum=0.998;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/0:29,0:29:72:0,72,833 0/1:24,9:33:99:229,0,434 0/0:36,0:36:96:0,96,1123 0/0:12,0:13:30:0,30,302 +chr22 30738133 . T G 33.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.367;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=5.0711;MLEAC=3;MLEAF=0.375;MQ=29.76;MQ0=0;MQRankSum=-0.150;QD=0.49;ReadPosRankSum=0.721;SB=-6.687e-01 GT:AD:DP:GQ:PL 0/1:18,2:20:23:23,0,308 0/1:25,1:26:6:6,0,292 0/0:21,0:21:30:0,30,332 0/1:19,2:21:46:46,0,149 +chr22 30741034 . T G 80.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.177;DP=237;Dels=0.00;FS=108.255;HaplotypeScore=12.8442;MLEAC=1;MLEAF=0.125;MQ=35.20;MQ0=0;MQRankSum=-5.511;QD=1.40;ReadPosRankSum=1.589;SB=-6.459e+00 GT:AD:DP:GQ:PL 0/0:60,5:65:17:0,17,1572 0/0:49,4:53:20:0,20,1152 0/0:57,4:61:57:0,57,1524 0/1:46,11:57:99:116,0,1368 +chr22 30741267 . C G 474.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.514;DP=62;Dels=0.00;FS=9.303;HaplotypeScore=6.2547;MLEAC=4;MLEAF=0.500;MQ=26.66;MQ0=0;MQRankSum=3.666;QD=7.66;ReadPosRankSum=-0.857;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,6:17:99:118,0,99 0/1:16,4:20:69:101,0,69 0/1:7,6:13:52:187,0,52 0/1:8,4:12:9:111,0,9 +chr22 30864897 rs5753162 A T 262.82 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.356;DB;DP=19;Dels=0.00;FS=14.472;HaplotypeScore=0.9302;MLEAC=7;MLEAF=0.875;MQ=26.44;MQ0=0;MQRankSum=2.115;QD=13.83;ReadPosRankSum=-1.573;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,4:7:12:131,12,0 0/1:5,1:6:30:30,0,35 1/1:1,3:4:9:92,9,0 1/1:0,2:2:6:53,6,0 +chr22 30866380 rs2269964 T C 1696.60 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.903;DB;DP=66;Dels=0.02;FS=15.866;HaplotypeScore=0.5742;MLEAC=7;MLEAF=0.875;MQ=35.32;MQ0=0;MQRankSum=1.930;QD=25.71;ReadPosRankSum=0.486;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:30:399,30,0 0/1:14,10:24:99:299,0,304 1/1:3,12:15:17:464,17,0 1/1:1,15:16:45:579,45,0 +chr22 30975578 . A T 36.90 . AC=1;AF=0.167;AN=6;BaseQRankSum=0.898;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.3326;MLEAC=1;MLEAF=0.167;MQ=32.49;MQ0=0;MQRankSum=0.480;QD=9.22;ReadPosRankSum=0.000;SB=0.216 GT:AD:DP:GQ:PL 0/1:1,2:4:30:71,0,30 0/0:4,0:4:6:0,6,66 ./. 0/0:4,0:4:9:0,9,123 +chr22 30976661 . T A 79.02 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.238;DP=148;Dels=0.00;FS=61.951;HaplotypeScore=1.6575;MLEAC=3;MLEAF=0.375;MQ=28.03;MQ0=0;MQRankSum=0.049;QD=0.72;ReadPosRankSum=-0.285;SB=0.730 GT:AD:DP:GQ:PL 0/1:32,6:38:80:80,0,685 0/1:28,3:31:16:16,0,433 0/0:38,1:39:20:0,20,583 0/1:35,5:40:26:26,0,586 +chr22 31329954 rs5753398 A G 226.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.809;DB;DP=53;Dels=0.04;FS=2.596;HaplotypeScore=3.7347;MLEAC=4;MLEAF=0.500;MQ=30.73;MQ0=0;MQRankSum=-1.992;QD=4.28;ReadPosRankSum=1.675;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:6,1:7:16:16,0,124 0/1:10,4:15:82:82,0,193 0/1:11,5:16:87:87,0,279 0/1:10,3:13:84:84,0,133 +chr22 31864269 . C G 97.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.879;DP=138;Dels=0.01;FS=12.560;HaplotypeScore=4.0745;MLEAC=1;MLEAF=0.125;MQ=27.89;MQ0=0;MQRankSum=0.233;QD=3.27;ReadPosRankSum=-2.007;SB=0.705 GT:AD:DP:GQ:PL 0/0:37,1:38:62:0,62,924 0/0:34,2:36:26:0,26,749 0/0:34,0:34:66:0,66,727 0/1:23,6:29:99:134,0,357 +chr22 32058269 rs16989379 G A 243.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.879;DB;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7877;MLEAC=1;MLEAF=0.125;MQ=33.62;MQ0=0;MQRankSum=-0.976;QD=7.87;ReadPosRankSum=1.155;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,12:31:99:280,0,604 0/0:33,0:33:81:0,81,956 0/0:34,0:34:99:0,99,1193 0/0:26,0:26:63:0,63,763 +chr22 32222618 . G T 55.22 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.062;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4710;MLEAC=3;MLEAF=0.375;MQ=28.80;MQ0=0;MQRankSum=0.158;QD=1.17;ReadPosRankSum=1.965;SB=14.94 GT:AD:DP:GQ:PL 0/1:13,2:15:49:49,0,105 0/1:11,2:13:28:28,0,160 0/1:17,2:19:21:21,0,197 0/0:9,0:10:12:0,12,132 +chr22 32302349 . T A 609.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.787;DP=207;Dels=0.00;FS=77.253;HaplotypeScore=13.9971;MLEAC=4;MLEAF=0.500;MQ=33.25;MQ0=0;MQRankSum=-5.692;QD=2.94;ReadPosRankSum=2.536;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:41,12:54:99:267,0,842 0/1:43,9:52:99:131,0,1091 0/1:52,9:61:99:137,0,1064 0/1:31,8:39:99:117,0,641 +chr22 32330188 . C T 206.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.818;DP=146;Dels=0.01;FS=9.201;HaplotypeScore=7.0008;MLEAC=3;MLEAF=0.375;MQ=29.27;MQ0=0;MQRankSum=-2.114;QD=1.93;ReadPosRankSum=2.931;SB=0.303 GT:AD:DP:GQ:PL 0/1:28,4:32:55:55,0,526 0/1:24,8:33:99:157,0,388 0/1:37,4:41:38:38,0,676 0/0:37,2:39:36:0,36,906 +chr22 32480642 . A G 291.29 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.827;DP=114;Dels=0.00;FS=4.640;HaplotypeScore=1.9543;MLEAC=3;MLEAF=0.375;MQ=34.23;MQ0=0;MQRankSum=-0.584;QD=3.24;ReadPosRankSum=-0.878;SB=0.417 GT:AD:DP:GQ:PL 0/0:23,1:24:10:0,10,566 0/1:28,3:31:27:27,0,637 0/1:24,5:29:99:114,0,598 0/1:22,8:30:99:193,0,394 +chr22 32498216 . G T 71.14 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.242;DP=148;Dels=0.00;FS=11.549;HaplotypeScore=5.7763;MLEAC=3;MLEAF=0.375;MQ=33.80;MQ0=0;MQRankSum=-1.409;QD=0.61;ReadPosRankSum=-0.260;SB=-1.034e+00 GT:AD:DP:GQ:PL 0/0:29,2:31:4:0,4,719 0/1:30,5:35:73:73,0,705 0/1:40,4:44:9:9,0,1164 0/1:35,3:38:30:30,0,649 +chr22 32500807 . A C 172.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.602;DP=129;Dels=0.00;FS=44.065;HaplotypeScore=4.9922;MLEAC=4;MLEAF=0.500;MQ=36.18;MQ0=0;MQRankSum=-4.356;QD=1.34;ReadPosRankSum=2.490;SB=-6.792e-01 GT:AD:DP:GQ:PL 0/1:27,5:32:82:82,0,779 0/1:33,4:37:37:37,0,882 0/1:31,5:36:88:88,0,739 0/1:22,2:24:7:7,0,498 +chr22 32506143 rs33954397 C T 588.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.072;DB;DP=163;Dels=0.00;FS=6.350;HaplotypeScore=2.5896;MLEAC=1;MLEAF=0.125;MQ=35.78;MQ0=0;MQRankSum=-0.464;QD=14.37;ReadPosRankSum=3.231;SB=-1.950e+02 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,102,1240 0/1:21,20:41:99:625,0,513 0/0:49,0:49:99:0,141,1809 0/0:36,0:36:90:0,90,1114 +chr22 32554985 rs5998267 A G 2440.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=5.141;DB;DP=196;Dels=0.00;FS=2.010;HaplotypeScore=4.2648;MLEAC=4;MLEAF=0.500;MQ=36.36;MQ0=0;MQRankSum=-2.657;QD=12.45;ReadPosRankSum=1.023;SB=-7.250e+02 GT:AD:DP:GQ:PL 0/1:26,21:47:99:662,0,782 0/1:29,22:51:99:663,0,948 0/1:32,15:47:99:469,0,895 0/1:28,22:51:99:689,0,833 +chr22 32579550 rs136428 T C 1578.56 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.566;DB;DP=101;Dels=0.00;FS=17.440;HaplotypeScore=3.1772;MLEAC=7;MLEAF=0.875;MQ=27.78;MQ0=0;MQRankSum=1.313;QD=15.63;ReadPosRankSum=1.096;SB=-7.743e+02 GT:AD:DP:GQ:PL 0/1:22,16:38:99:389,0,168 1/1:4,20:24:39:482,39,0 1/1:4,21:25:42:496,42,0 1/1:2,11:14:21:256,21,0 +chr22 32651085 . T G 62.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.217;DP=70;Dels=0.03;FS=0.000;HaplotypeScore=12.2699;MLEAC=4;MLEAF=0.500;MQ=23.72;MQ0=0;MQRankSum=0.928;QD=0.89;ReadPosRankSum=0.186;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,1:14:22:22,0,53 0/1:14,1:15:17:17,0,82 0/1:17,4:22:56:56,0,132 0/1:16,1:17:9:9,0,86 +chr22 32804117 . G A 47.01 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.510;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.0842;MLEAC=3;MLEAF=0.375;MQ=34.31;MQ0=0;MQRankSum=-1.444;QD=1.21;ReadPosRankSum=0.155;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,2:13:49:49,0,330 0/0:11,0:11:9:0,9,118 0/1:14,2:16:34:34,0,299 0/1:9,1:10:5:5,0,277 +chr22 32807939 . G T 31.45 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.147;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.2447;MLEAC=4;MLEAF=0.500;MQ=25.86;MQ0=0;MQRankSum=-0.065;QD=1.08;ReadPosRankSum=0.000;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,1:7:9:0,9,95 1/1:8,2:10:6:62,6,0 0/1:9,1:10:8:8,0,197 0/1:8,1:9:4:4,0,166 +chr22 32891368 rs111356060 T C 81.25 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.473;DB;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.7568;MLEAC=2;MLEAF=0.333;MQ=24.84;MQ0=0;MQRankSum=0.566;QD=6.77;ReadPosRankSum=-0.793;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:2,2:4:20:71,0,20 0/1:6,2:8:38:48,0,38 0/0:3,1:4:6:0,6,84 ./. +chr22 35804544 . T A 55.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.782;DP=61;Dels=0.05;FS=11.826;HaplotypeScore=9.7805;MLEAC=3;MLEAF=0.375;MQ=26.88;MQ0=0;MQRankSum=0.779;QD=1.24;ReadPosRankSum=-2.504;SB=0.425 GT:AD:DP:GQ:PL 0/1:15,2:17:28:28,0,76 0/0:14,0:14:15:0,15,149 0/1:10,1:11:23:23,0,52 0/1:14,2:16:48:48,0,90 +chr22 35819337 . G C 78.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.750;DP=116;Dels=0.00;FS=19.190;HaplotypeScore=2.2091;MLEAC=3;MLEAF=0.375;MQ=31.58;MQ0=0;MQRankSum=0.575;QD=0.87;ReadPosRankSum=-0.053;SB=0.251 GT:AD:DP:GQ:PL 0/1:26,3:29:49:49,0,467 0/0:25,1:26:17:0,17,445 0/1:24,4:28:66:66,0,593 0/1:31,2:33:5:5,0,611 +chr22 36123129 . G A 135.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.515;DP=60;Dels=0.02;FS=25.772;HaplotypeScore=3.7852;MLEAC=2;MLEAF=0.250;MQ=29.55;MQ0=0;MQRankSum=-1.983;QD=4.11;ReadPosRankSum=3.233;SB=-4.479e-01 GT:AD:DP:GQ:PL 0/0:12,0:12:12:0,12,154 0/1:13,5:18:99:134,0,200 0/1:11,4:15:42:42,0,143 0/0:13,1:14:5:0,5,318 +chr22 36157371 . G C 232.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.329;DP=90;Dels=0.01;FS=4.892;HaplotypeScore=10.5302;MLEAC=4;MLEAF=0.500;MQ=22.93;MQ0=0;MQRankSum=2.726;QD=2.58;ReadPosRankSum=-2.287;SB=-1.205e-02 GT:AD:DP:GQ:PL 0/1:15,6:22:84:84,0,182 0/1:21,4:25:89:89,0,190 0/1:21,5:26:63:63,0,127 0/1:14,2:16:39:39,0,137 +chr22 36623523 . G T 50.78 . AC=2;AF=0.250;AN=8;BaseQRankSum=-7.485;DP=177;Dels=0.00;FS=265.167;HaplotypeScore=10.9591;MLEAC=3;MLEAF=0.375;MQ=25.08;MQ0=0;MQRankSum=-5.157;QD=0.50;ReadPosRankSum=3.796;SB=-3.152e+00 GT:AD:DP:GQ:PL 0/0:32,9:41:0:0,0,515 0/1:25,12:37:56:56,0,486 0/1:53,12:65:34:34,0,781 0/0:28,6:34:28:0,28,596 +chr22 36678591 . A G 41.48 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.901;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=5.5280;MLEAC=2;MLEAF=0.250;MQ=24.62;MQ0=0;MQRankSum=-2.050;QD=4.15;ReadPosRankSum=0.907;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:19,1:20:39:0,39,420 0/0:18,0:18:27:0,27,263 0/0:16,2:18:0:0,0,368 1/1:4,5:9:9:83,9,0 +chr22 36689595 . C T 794.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.672;DP=94;Dels=0.00;FS=26.503;HaplotypeScore=4.6670;MLEAC=4;MLEAF=0.500;MQ=25.33;MQ0=0;MQRankSum=-1.277;QD=8.45;ReadPosRankSum=3.760;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,8:19:94:202,0,94 0/1:12,11:23:77:175,0,77 0/1:17,11:28:99:191,0,261 0/1:11,13:24:99:269,0,162 +chr22 36695141 . T C 111.99 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.033;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5664;MLEAC=3;MLEAF=0.375;MQ=34.21;MQ0=0;MQRankSum=-1.588;QD=1.29;ReadPosRankSum=0.198;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:25,2:28:46:46,0,338 0/1:30,4:35:68:68,0,677 0/0:31,1:32:14:0,14,532 0/1:22,2:24:41:41,0,241 +chr22 37196871 rs3484 G A 749.87 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.622;DB;DP=67;Dels=0.00;FS=1.547;HaplotypeScore=6.5141;MLEAC=6;MLEAF=0.750;MQ=25.26;MQ0=0;MQRankSum=0.015;QD=11.19;ReadPosRankSum=0.349;SB=-2.461e+02 GT:AD:DP:GQ:PL 0/1:11,3:14:71:71,0,157 1/1:7,10:19:27:280,27,0 1/1:6,9:17:18:200,18,0 1/1:6,9:17:24:243,24,0 +chr22 37263455 . A C 397.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.808;DP=130;Dels=0.00;FS=50.227;HaplotypeScore=2.9804;MLEAC=4;MLEAF=0.500;MQ=35.37;MQ0=0;MQRankSum=-2.699;QD=3.06;ReadPosRankSum=-0.057;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,6:24:99:153,0,452 0/1:23,4:27:79:79,0,511 0/1:41,5:47:63:63,0,982 0/1:25,7:32:99:145,0,602 +chr22 37334596 . C A 46.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.033;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.2892;MLEAC=3;MLEAF=0.375;MQ=31.14;MQ0=0;MQRankSum=-1.280;QD=1.55;ReadPosRankSum=-1.782;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:11,1:12:4:4,0,205 0/1:7,3:10:65:65,0,171 0/1:7,1:8:18:18,0,108 0/0:5,0:5:9:0,9,114 +chr22 37420878 . T C 101.85 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.382;DP=21;Dels=0.00;FS=3.090;HaplotypeScore=2.2042;MLEAC=7;MLEAF=0.875;MQ=22.44;MQ0=0;MQRankSum=-0.382;QD=4.85;ReadPosRankSum=0.978;SB=4.44 GT:AD:DP:GQ:PL 1/1:3,1:4:3:27,3,0 0/1:5,2:7:22:22,0,22 1/1:2,4:6:9:68,9,0 1/1:3,1:4:3:26,3,0 +chr22 37470602 . G A 31.97 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.804;DP=45;Dels=0.00;FS=14.624;HaplotypeScore=3.9927;MLEAC=3;MLEAF=0.375;MQ=25.19;MQ0=0;MQRankSum=-0.285;QD=0.91;ReadPosRankSum=-0.285;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:6:6,0,210 0/0:10,0:10:12:0,12,131 0/1:10,2:13:12:12,0,112 0/1:10,3:13:55:55,0,58 +chr22 37603112 . G A 46.43 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.410;DP=24;Dels=0.00;FS=23.201;HaplotypeScore=1.1054;MLEAC=3;MLEAF=0.375;MQ=20.61;MQ0=0;MQRankSum=0.705;QD=2.73;ReadPosRankSum=-0.392;SB=1.18 GT:AD:DP:GQ:PL 0/0:7,0:7:12:0,12,134 0/1:2,3:5:42:56,0,42 0/1:4,1:5:16:16,0,49 0/1:6,1:7:16:17,0,16 +chr22 37683218 rs5756591 A G 47.35 . AC=2;AF=0.500;AN=4;BaseQRankSum=1.589;DB;DP=12;Dels=0.00;FS=3.310;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.500;MQ=21.09;MQ0=0;MQRankSum=1.589;QD=23.68;ReadPosRankSum=-0.572;SB=0.891 GT:AD:DP:GQ:PL 1/1:0,2:2:6:83,6,0 0/0:7,0:7:6:0,6,60 ./. ./. +chr22 37699429 . G A 60.40 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.748;DP=69;Dels=0.01;FS=1.793;HaplotypeScore=5.7551;MLEAC=1;MLEAF=0.125;MQ=27.86;MQ0=0;MQRankSum=-0.168;QD=2.52;ReadPosRankSum=0.842;SB=-2.436e+00 GT:AD:DP:GQ:PL 0/0:17,1:18:5:0,5,266 0/0:16,1:17:1:0,1,212 0/1:18,6:24:95:95,0,388 0/0:9,0:9:15:0,15,150 +chr22 37705271 . A T 597.80 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.166;DP=106;Dels=0.00;FS=15.357;HaplotypeScore=2.4563;MLEAC=4;MLEAF=0.500;MQ=36.05;MQ0=0;MQRankSum=-3.356;QD=5.64;ReadPosRankSum=-1.761;SB=-2.272e-01 GT:AD:DP:GQ:PL 0/1:24,2:26:12:12,0,585 0/1:17,9:26:99:283,0,453 0/1:25,8:33:99:191,0,400 0/1:15,6:21:99:154,0,228 +chr22 37865829 . C T 170.71 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.107;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.6473;MLEAC=5;MLEAF=0.625;MQ=30.39;MQ0=0;MQRankSum=-0.914;QD=6.57;ReadPosRankSum=1.395;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,1:5:16:16,0,74 0/1:3,2:5:23:36,0,23 0/1:7,5:12:19:132,0,19 1/1:3,1:4:3:29,3,0 +chr22 37892955 rs148392261 CA C 1187.53 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.160;DB;DP=104;FS=0.000;HaplotypeScore=23.3102;MLEAC=5;MLEAF=0.625;MQ=36.54;MQ0=0;MQRankSum=-2.055;QD=11.42;RPA=3,2;RU=A;ReadPosRankSum=1.976;SB=-1.130e+02;STR GT:AD:DP:GQ:PL 0/1:21,6:28:99:274,0,530 1/1:8,14:22:47:669,47,0 0/1:21,3:24:99:164,0,509 0/1:23,4:27:99:135,0,577 +chr22 37900006 rs3817801 T C 1372.57 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.511;DB;DP=96;Dels=0.00;FS=9.293;HaplotypeScore=0.1446;MLEAC=5;MLEAF=0.625;MQ=34.84;MQ0=0;MQRankSum=-1.841;QD=14.30;ReadPosRankSum=-0.104;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,8:24:99:244,0,486 1/1:1,19:20:57:669,57,0 0/1:18,8:26:99:198,0,588 0/1:16,10:26:99:307,0,363 +chr22 38044322 . T A 57.05 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.917;DP=34;Dels=0.03;FS=26.250;HaplotypeScore=0.9874;MLEAC=3;MLEAF=0.375;MQ=30.35;MQ0=0;MQRankSum=-1.800;QD=1.90;ReadPosRankSum=1.257;SB=1.97 GT:AD:DP:GQ:PL 0/1:7,2:9:41:41,0,125 0/0:4,0:4:6:0,6,76 0/1:7,1:8:17:17,0,146 0/1:10,2:12:41:41,0,191 +chr22 38046033 . T G 48.57 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.912;DP=81;Dels=0.00;FS=2.389;HaplotypeScore=2.5947;MLEAC=3;MLEAF=0.375;MQ=26.25;MQ0=0;MQRankSum=1.228;QD=0.78;ReadPosRankSum=-1.155;SB=-3.712e-01 GT:AD:DP:GQ:PL 0/1:17,2:19:9:9,0,199 0/1:20,2:23:26:26,0,86 0/0:19,0:19:27:0,27,300 0/1:17,3:20:56:56,0,60 +chr22 38122122 rs5756795 T C 282.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.925;DB;DP=123;Dels=0.00;FS=10.547;HaplotypeScore=5.3331;MLEAC=3;MLEAF=0.375;MQ=25.05;MQ0=0;MQRankSum=0.541;QD=3.11;ReadPosRankSum=-0.247;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/0:32,0:32:66:0,66,752 0/1:24,6:30:99:141,0,294 0/1:25,5:30:91:91,0,476 0/1:25,6:31:94:94,0,344 +chr22 38130550 . C T 93.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.897;DP=47;Dels=0.00;FS=8.432;HaplotypeScore=3.6515;MLEAC=4;MLEAF=0.500;MQ=16.76;MQ0=0;MQRankSum=1.127;QD=3.02;ReadPosRankSum=0.745;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,3:8:3:30,3,0 0/0:13,2:16:3:0,3,33 0/1:9,1:10:11:11,0,80 0/1:8,5:13:70:94,0,70 +chr22 38203789 rs4821716 T G 34.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.736;DB;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=15.63;MQ0=0;MQRankSum=0.736;QD=11.34;ReadPosRankSum=0.736;SB=-3.001e+01 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3:34,3,0 1/1:1,1:2:3:33,3,0 +chr22 38211062 . A T 97.02 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.817;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5169;MLEAC=4;MLEAF=0.500;MQ=27.86;MQ0=0;MQRankSum=-1.316;QD=1.21;ReadPosRankSum=0.662;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,2:20:25:25,0,404 0/1:16,1:17:5:5,0,216 0/1:20,2:22:10:10,0,332 0/1:14,7:21:98:98,0,150 +chr22 38254790 . T G 91.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.665;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.1005;MLEAC=3;MLEAF=0.375;MQ=28.17;MQ0=0;MQRankSum=-1.060;QD=1.30;ReadPosRankSum=0.310;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,5:26:78:78,0,316 0/0:31,1:32:10:0,10,319 0/1:26,5:31:47:47,0,409 0/1:11,2:13:8:8,0,192 +chr22 38349021 . A C 56.67 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.515;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.2235;MLEAC=4;MLEAF=0.500;MQ=25.95;MQ0=0;MQRankSum=-1.789;QD=0.47;ReadPosRankSum=5.590;SB=-4.490e-02 GT:AD:DP:GQ:PL 0/1:29,8:37:29:29,0,163 0/1:25,5:30:18:18,0,334 0/1:24,6:30:46:46,0,231 0/1:21,3:24:5:5,0,202 +chr22 38349066 . C T 53.37 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.492;DP=170;Dels=0.00;FS=93.003;HaplotypeScore=3.9717;MLEAC=1;MLEAF=0.125;MQ=34.23;MQ0=0;MQRankSum=-1.008;QD=1.01;ReadPosRankSum=1.500;SB=-3.054e+00 GT:AD:DP:GQ:PL 0/0:32,2:34:5:0,5,775 0/0:41,2:43:25:0,25,894 0/1:45,8:53:89:89,0,1263 0/0:40,0:40:72:0,72,844 +chr22 38453679 rs5845366 A AG 159.30 . AC=6;AF=1.00;AN=6;DB;DP=18;FS=0.000;HaplotypeScore=10.4052;MLEAC=6;MLEAF=1.00;MQ=15.33;MQ0=0;QD=10.62;RPA=2,3;RU=G;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:2,4:3:9:122,9,0 1/1:4,2:2:3:41,3,0 ./. 1/1:2,1:1:3:41,3,0 +chr22 38493096 . G T 43.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.285;DP=43;Dels=0.00;FS=2.627;HaplotypeScore=4.8496;MLEAC=2;MLEAF=0.250;MQ=25.73;MQ0=0;MQRankSum=-0.158;QD=1.75;ReadPosRankSum=0.917;SB=0.067 GT:AD:DP:GQ:PL 0/0:7,0:7:6:0,6,63 0/1:6,3:9:69:69,0,70 0/1:14,1:16:15:15,0,61 0/0:11,0:11:15:0,15,187 +chr22 38516884 . A C 416.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.061;DP=165;Dels=0.01;FS=133.964;HaplotypeScore=7.7401;MLEAC=4;MLEAF=0.500;MQ=33.24;MQ0=0;MQRankSum=2.379;QD=2.52;ReadPosRankSum=-2.231;SB=0.092 GT:AD:DP:GQ:PL 0/1:36,4:40:70:70,0,643 0/1:38,6:44:99:125,0,534 0/1:38,9:47:99:200,0,770 0/1:30,3:33:64:64,0,389 +chr22 38693217 . T G 55.23 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.849;DP=205;Dels=0.00;FS=71.320;HaplotypeScore=10.8017;MLEAC=3;MLEAF=0.375;MQ=33.88;MQ0=0;MQRankSum=0.639;QD=0.36;ReadPosRankSum=1.719;SB=-1.636e+00 GT:AD:DP:GQ:PL 0/1:42,5:47:34:34,0,995 0/0:48,2:50:47:0,47,1252 0/1:55,5:60:3:3,0,1449 0/1:43,5:48:59:59,0,979 +chr22 38694693 . G T 48.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.521;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6914;MLEAC=1;MLEAF=0.125;MQ=28.69;MQ0=0;MQRankSum=-0.268;QD=2.72;ReadPosRankSum=0.437;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,0:24:39:0,39,410 0/0:17,0:17:30:0,30,274 0/0:24,0:24:45:0,45,457 0/1:14,4:18:85:85,0,189 +chr22 39034867 rs5757193 G A 693.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.944;DB;DP=114;Dels=0.00;FS=2.440;HaplotypeScore=5.1846;MLEAC=3;MLEAF=0.375;MQ=31.75;MQ0=0;MQRankSum=-1.115;QD=8.46;ReadPosRankSum=-1.675;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:32,0:32:90:0,90,1072 0/1:16,13:29:99:393,0,357 0/1:24,10:34:99:244,0,591 0/1:15,4:19:99:100,0,292 +chr22 39066820 rs3761454 C T 1257.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.276;DB;DP=125;Dels=0.00;FS=2.795;HaplotypeScore=1.4872;MLEAC=3;MLEAF=0.375;MQ=34.82;MQ0=0;MQRankSum=-4.012;QD=12.97;ReadPosRankSum=3.389;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:28,0:28:81:0,81,1092 0/1:21,14:35:99:390,0,649 0/1:14,20:34:99:628,0,381 0/1:15,13:28:99:283,0,377 +chr22 39267437 . G T 112.63 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.692;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.8801;MLEAC=4;MLEAF=0.500;MQ=21.92;MQ0=0;MQRankSum=0.094;QD=2.30;ReadPosRankSum=1.927;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,6:18:76:76,0,81 0/1:11,1:12:22:22,0,65 0/1:10,2:12:35:35,0,129 0/1:4,3:7:22:22,0,48 +chr22 39381826 rs2076109 A G 177.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.060;DB;DP=111;Dels=0.01;FS=2.209;HaplotypeScore=0.4497;MLEAC=4;MLEAF=0.500;MQ=16.41;MQ0=0;MQRankSum=0.557;QD=2.12;ReadPosRankSum=-1.144;SB=-3.102e+01 GT:AD:DP:GQ:PL 1/1:18,9:27:6:73,6,0 0/0:15,11:26:3:0,3,43 0/1:25,5:30:27:27,0,106 0/1:15,11:27:64:121,0,64 +chr22 39496263 . T C 49.75 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.848;DP=104;Dels=0.01;FS=2.304;HaplotypeScore=9.4358;MLEAC=2;MLEAF=0.250;MQ=27.05;MQ0=0;MQRankSum=1.070;QD=1.06;ReadPosRankSum=-2.402;SB=-1.132e+00 GT:AD:DP:GQ:PL 0/0:23,0:23:30:0,30,343 0/1:25,1:26:8:8,0,235 0/0:31,2:33:9:0,9,385 0/1:17,4:21:81:81,0,270 +chr22 39496336 rs139293 G T 631.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.487;DB;DP=167;Dels=0.00;FS=0.757;HaplotypeScore=9.6371;MLEAC=3;MLEAF=0.375;MQ=32.54;MQ0=0;MQRankSum=-2.785;QD=5.26;ReadPosRankSum=0.449;SB=-2.450e+02 GT:AD:DP:GQ:PL 0/1:31,6:37:99:108,0,834 0/0:47,0:47:99:0,129,1618 0/1:33,14:47:99:332,0,821 0/1:25,10:36:99:235,0,585 +chr22 39715140 rs470082 C T 365.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.756;DB;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9784;MLEAC=1;MLEAF=0.125;MQ=32.77;MQ0=0;MQRankSum=1.683;QD=10.76;ReadPosRankSum=3.416;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:21,13:34:99:402,0,448 0/0:28,0:28:72:0,72,897 0/0:30,0:30:66:0,66,742 0/0:25,0:25:51:0,51,597 +chr22 39812874 . T C 809.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.742;DP=120;Dels=0.01;FS=5.319;HaplotypeScore=17.3678;MLEAC=4;MLEAF=0.500;MQ=29.41;MQ0=0;MQRankSum=-2.457;QD=6.75;ReadPosRankSum=0.386;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,10:33:99:191,0,464 0/1:27,6:34:99:104,0,465 0/1:17,14:31:99:362,0,354 0/1:13,8:21:99:195,0,163 +chr22 39826050 . C T 36 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.698;DP=147;Dels=0.00;FS=70.046;HaplotypeScore=7.3520;MLEAC=1;MLEAF=0.125;MQ=32.16;MQ0=0;MQRankSum=-3.186;QD=0.90;ReadPosRankSum=-0.199;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/0:34,1:35:78:0,78,970 0/0:37,0:37:78:0,78,919 0/1:33,7:40:72:72,0,839 0/0:33,1:35:25:0,25,661 +chr22 40045832 . A G 121.16 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.039;DP=42;Dels=0.05;FS=2.993;HaplotypeScore=7.9421;MLEAC=3;MLEAF=0.375;MQ=24.80;MQ0=0;MQRankSum=0.346;QD=3.67;ReadPosRankSum=1.417;SB=-6.818e-02 GT:AD:DP:GQ:PL 0/1:7,4:11:12:94,0,12 0/0:8,1:9:6:0,6,48 0/1:6,1:7:17:17,0,98 0/1:10,3:13:20:52,0,20 +chr22 40055896 rs136851 T C 2229.78 . AC=6;AF=0.750;AN=8;BaseQRankSum=1.701;DB;DP=116;Dels=0.01;FS=11.662;HaplotypeScore=2.4919;MLEAC=6;MLEAF=0.750;MQ=29.79;MQ0=0;MQRankSum=-2.505;QD=19.22;ReadPosRankSum=1.827;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:12,19:31:99:566,0,332 0/1:21,7:28:99:137,0,547 1/1:2,33:35:96:1090,96,0 1/1:3,18:21:48:483,48,0 +chr22 40073443 . A C 93.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.157;DP=23;Dels=0.00;FS=2.754;HaplotypeScore=0.1663;MLEAC=3;MLEAF=0.375;MQ=26.68;MQ0=0;MQRankSum=0.602;QD=7.83;ReadPosRankSum=0.880;SB=0.854 GT:AD:DP:GQ:PL 0/0:3,0:3:6:0,6,70 0/1:6,1:7:18:18,0,53 0/0:8,0:8:9:0,9,99 1/1:1,4:5:12:122,12,0 +chr22 40415422 . T C 46.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.113;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=1.9619;MLEAC=3;MLEAF=0.375;MQ=26.76;MQ0=0;MQRankSum=1.725;QD=1.13;ReadPosRankSum=-1.836;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:12:0,12,107 0/1:14,2:16:36:36,0,131 0/1:13,1:14:1:1,0,201 0/1:9,2:11:49:49,0,66 +chr22 40711495 . C T 52 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.811;DP=120;Dels=0.00;FS=7.369;HaplotypeScore=3.4990;MLEAC=1;MLEAF=0.125;MQ=31.76;MQ0=0;MQRankSum=-1.163;QD=1.73;ReadPosRankSum=1.414;SB=0.280 GT:AD:DP:GQ:PL 0/0:32,0:32:60:0,60,762 0/1:25,5:30:88:88,0,447 0/0:30,0:30:51:0,51,609 0/0:26,2:28:21:0,21,458 +chr22 40814398 . A C 86.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.449;DP=62;Dels=0.00;FS=2.458;HaplotypeScore=1.6797;MLEAC=3;MLEAF=0.375;MQ=28.92;MQ0=0;MQRankSum=0.096;QD=1.93;ReadPosRankSum=0.417;SB=-1.244e-02 GT:AD:DP:GQ:PL 0/1:8,1:9:23:23,0,54 0/1:16,2:18:39:39,0,133 0/0:17,0:17:30:0,30,351 0/1:13,4:18:68:68,0,122 +chr22 41645316 . G T 61.64 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.035;DP=39;Dels=0.03;FS=23.886;HaplotypeScore=2.3429;MLEAC=4;MLEAF=0.500;MQ=29.07;MQ0=0;MQRankSum=-2.007;QD=2.68;ReadPosRankSum=1.711;SB=-4.512e-01 GT:AD:DP:GQ:PL 1/1:1,3:4:6:61,6,0 0/1:5,2:7:40:40,0,179 0/1:9,2:11:5:5,0,158 0/0:13,3:16:18:0,18,186 +chr22 41652846 rs4820435 G T 106.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.585;DB;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0906;MLEAC=1;MLEAF=0.125;MQ=32.59;MQ0=0;MQRankSum=1.499;QD=5.63;ReadPosRankSum=-0.465;SB=-1.166e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:30:0,30,341 0/1:14,5:19:99:143,0,403 0/0:19,0:19:39:0,39,488 0/0:18,0:19:36:0,36,391 +chr22 41752089 . C G,T 48.83 . AC=3,2;AF=0.500,0.333;AN=6;BaseQRankSum=2.359;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.3069;MLEAC=3,2;MLEAF=0.500,0.333;MQ=18.45;MQ0=0;MQRankSum=1.532;QD=2.22;ReadPosRankSum=-0.466;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,1,1:9:17:17,0,18,20,21,40 1/1:3,2,0:5:6:53,6,0,53,6,53 ./. 2/2:6,0,2:8:6:53,53,53,6,6,0 +chr22 41969823 rs141782564 T G 56.11 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.132;DB;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.2347;MLEAC=2;MLEAF=0.250;MQ=34.31;MQ0=0;MQRankSum=1.317;QD=1.08;ReadPosRankSum=-0.174;SB=0.334 GT:AD:DP:GQ:PL 0/1:20,3:23:44:44,0,362 0/0:27,2:29:14:0,14,527 0/0:25,1:26:8:0,8,492 0/1:26,3:29:53:53,0,459 +chr22 42076381 rs5758405 C A 2631.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.413;DB;DP=99;Dels=0.01;FS=2.003;HaplotypeScore=0.9122;MLEAC=7;MLEAF=0.875;MQ=33.40;MQ0=0;MQRankSum=-4.277;QD=26.58;ReadPosRankSum=-0.141;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:78:958,78,0 0/1:20,10:30:99:245,0,575 1/1:0,21:21:63:766,63,0 1/1:0,21:21:63:707,63,0 +chr22 42280852 . T C 85.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.378;DP=105;Dels=0.02;FS=24.092;HaplotypeScore=13.1610;MLEAC=3;MLEAF=0.375;MQ=29.65;MQ0=0;MQRankSum=-0.461;QD=1.16;ReadPosRankSum=-1.619;SB=-1.590e-02 GT:AD:DP:GQ:PL 0/1:18,2:20:22:22,0,413 0/0:30,0:30:42:0,42,463 0/1:25,3:28:32:32,0,543 0/1:21,4:25:75:75,0,137 +chr22 42293140 rs2228313 G C 98.16 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.147;DB;DP=57;Dels=0.00;FS=2.983;HaplotypeScore=6.2275;MLEAC=1;MLEAF=0.125;MQ=24.05;MQ0=0;MQRankSum=1.080;QD=8.92;ReadPosRankSum=0.877;SB=-3.800e+01 GT:AD:DP:GQ:PL 0/1:6,5:11:48:134,0,48 0/0:16,0:17:24:0,24,235 0/0:16,0:16:24:0,24,286 0/0:13,0:13:9:0,9,100 +chr22 42319353 . G A 33.01 . AC=4;AF=1.00;AN=4;BaseQRankSum=-1.380;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.4333;MLEAC=4;MLEAF=1.00;MQ=14.38;MQ0=0;MQRankSum=1.380;QD=5.50;ReadPosRankSum=-0.720;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:2:3:29,3,0 1/1:3,1:4:3:37,3,0 +chr22 42390465 . T A 113.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.212;DP=51;Dels=0.02;FS=23.347;HaplotypeScore=2.2054;MLEAC=4;MLEAF=0.500;MQ=24.54;MQ0=0;MQRankSum=-0.265;QD=2.23;ReadPosRankSum=2.602;SB=0.071 GT:AD:DP:GQ:PL 0/1:14,2:16:43:43,0,146 0/1:9,2:12:33:33,0,119 0/1:9,3:12:31:31,0,262 0/1:8,2:10:49:49,0,64 +chr22 42466342 . C G 1321.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=2.221;DP=139;Dels=0.01;FS=107.039;HaplotypeScore=13.0346;MLEAC=4;MLEAF=0.500;MQ=22.30;MQ0=0;MQRankSum=-0.892;QD=9.51;ReadPosRankSum=4.323;SB=-3.806e+00 GT:AD:DP:GQ:PL 0/1:10,29:40:70:428,0,70 0/1:6,21:28:44:329,0,44 0/1:13,23:36:99:384,0,149 0/1:15,17:33:35:223,0,35 +chr22 42523680 . T C 92.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.309;DP=101;Dels=0.00;FS=4.648;HaplotypeScore=1.1121;MLEAC=2;MLEAF=0.250;MQ=24.29;MQ0=0;MQRankSum=1.638;QD=1.93;ReadPosRankSum=-0.526;SB=0.825 GT:AD:DP:GQ:PL 0/0:23,1:24:4:0,4,223 0/1:15,3:18:54:54,0,205 0/0:29,0:29:36:0,36,347 0/1:26,4:30:79:79,0,279 +chr22 42610895 . A T 74.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.127;DP=207;Dels=0.00;FS=31.921;HaplotypeScore=2.1725;MLEAC=2;MLEAF=0.250;MQ=39.37;MQ0=0;MQRankSum=-1.798;QD=0.76;ReadPosRankSum=-0.136;SB=0.845 GT:AD:DP:GQ:PL 0/1:42,5:47:67:67,0,1302 0/0:44,1:45:75:0,75,1346 0/0:62,2:64:75:0,75,1908 0/1:46,5:51:49:49,0,1277 +chr22 42807450 . G T 33.92 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.460;DP=47;Dels=0.00;FS=26.113;HaplotypeScore=6.5042;MLEAC=3;MLEAF=0.375;MQ=28.30;MQ0=0;MQRankSum=-2.633;QD=0.97;ReadPosRankSum=1.632;SB=-3.278e-01 GT:AD:DP:GQ:PL 0/1:11,4:15:35:35,0,274 0/1:10,2:12:20:20,0,109 0/0:11,1:12:24:0,24,274 0/1:5,1:8:22:22,0,38 +chr22 42912097 rs11553441 C T 274.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.258;DB;DP=100;Dels=0.00;FS=10.811;HaplotypeScore=0.6340;MLEAC=1;MLEAF=0.125;MQ=30.22;MQ0=0;MQRankSum=2.768;QD=10.58;ReadPosRankSum=0.000;SB=-5.692e+01 GT:AD:DP:GQ:PL 0/0:13,0:13:27:0,27,325 0/1:17,9:26:99:311,0,310 0/0:32,0:32:66:0,66,835 0/0:28,0:29:48:0,48,587 +chr22 43204936 . A G 46.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.335;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=12.2117;MLEAC=2;MLEAF=0.250;MQ=28.11;MQ0=0;MQRankSum=-3.931;QD=0.67;ReadPosRankSum=-3.345;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,6:32:44:44,0,471 0/1:31,6:37:44:44,0,681 0/0:46,2:48:33:0,33,851 0/0:12,1:13:21:0,21,240 +chr22 43243439 . A C 43.23 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.742;DP=21;Dels=0.00;FS=7.830;HaplotypeScore=3.9639;MLEAC=4;MLEAF=1.00;MQ=21.02;MQ0=0;MQRankSum=0.742;QD=5.40;ReadPosRankSum=0.742;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,4:6:6:55,6,0 ./. ./. 1/1:0,2:2:3:22,3,0 +chr22 43289568 . A G 77.57 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.807;DP=87;Dels=0.02;FS=1.476;HaplotypeScore=7.9761;MLEAC=2;MLEAF=0.250;MQ=33.73;MQ0=0;MQRankSum=-2.228;QD=1.89;ReadPosRankSum=-0.246;SB=-5.296e+01 GT:AD:DP:GQ:PL 0/0:23,0:23:36:0,36,388 0/0:20,2:22:21:0,21,483 0/1:18,4:22:60:60,0,493 0/1:15,3:18:59:59,0,227 +chr22 43576762 . G T 133.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.513;DP=183;Dels=0.00;FS=11.814;HaplotypeScore=5.5370;MLEAC=4;MLEAF=0.500;MQ=31.49;MQ0=0;MQRankSum=-0.379;QD=0.73;ReadPosRankSum=-2.068;SB=-3.233e+01 GT:AD:DP:GQ:PL 0/1:44,4:48:54:54,0,672 0/1:44,4:48:36:36,0,682 0/1:49,4:53:27:27,0,796 0/1:30,4:34:59:59,0,453 +chr22 44028171 . C T 193.22 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.114;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9810;MLEAC=2;MLEAF=0.250;MQ=36.00;MQ0=0;MQRankSum=-1.942;QD=6.23;ReadPosRankSum=1.967;SB=0.568 GT:AD:DP:GQ:PL 0/0:16,0:16:48:0,48,607 0/1:16,4:20:55:55,0,493 0/1:5,6:11:99:179,0,134 0/0:2,0:2:6:0,6,80 +chr22 44198653 . A T 33.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.897;DP=101;Dels=0.05;FS=19.514;HaplotypeScore=12.1257;MLEAC=2;MLEAF=0.250;MQ=18.95;MQ0=0;MQRankSum=2.081;QD=0.62;ReadPosRankSum=1.077;SB=3.14 GT:AD:DP:GQ:PL 0/1:19,1:20:16:16,0,120 0/0:28,0:28:6:0,6,65 0/1:30,3:33:58:58,0,142 0/0:15,0:15:9:0,9,75 +chr22 44351351 rs2294920 T C 35.77 . AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.99;MQ0=0;QD=17.89;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:0,2:2:6:67,6,0 ./. +chr22 44368122 rs3761472 A G 108.07 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.431;DB;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7361;MLEAC=1;MLEAF=0.125;MQ=34.58;MQ0=0;MQRankSum=-2.055;QD=6.00;ReadPosRankSum=2.007;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:36,0:36:96:0,96,1215 0/1:12,6:18:99:144,0,334 0/0:35,0:35:96:0,96,1165 0/0:5,0:5:12:0,12,150 +chr22 44528855 . C G 418.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.700;DP=142;Dels=0.01;FS=17.461;HaplotypeScore=8.4116;MLEAC=4;MLEAF=0.500;MQ=34.53;MQ0=0;MQRankSum=-2.354;QD=2.95;ReadPosRankSum=0.435;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:26,8:34:99:126,0,632 0/1:31,5:37:75:75,0,529 0/1:28,7:35:99:159,0,517 0/1:29,5:34:99:101,0,334 +chr22 44532414 . T C 258.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.005;DP=108;Dels=0.00;FS=14.527;HaplotypeScore=9.2787;MLEAC=4;MLEAF=0.500;MQ=33.89;MQ0=0;MQRankSum=-4.337;QD=2.39;ReadPosRankSum=2.104;SB=-1.391e-02 GT:AD:DP:GQ:PL 0/1:19,7:26:99:131,0,490 0/1:31,4:35:34:34,0,725 0/1:27,4:31:37:37,0,667 0/1:11,5:16:99:99,0,199 +chr22 45121202 . G C 87.94 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.761;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=4.5471;MLEAC=4;MLEAF=0.500;MQ=17.29;MQ0=0;MQRankSum=2.282;QD=2.38;ReadPosRankSum=-0.456;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:8,3:11:9:92,9,0 0/0:11,0:11:3:0,3,23 0/1:10,2:12:17:17,0,63 0/1:12,1:13:23:23,0,46 +chr22 45126775 rs3761485 T C 613.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.252;DB;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.2467;MLEAC=4;MLEAF=0.500;MQ=35.24;MQ0=0;MQRankSum=-0.402;QD=17.53;ReadPosRankSum=0.885;SB=-2.502e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:30:361,30,0 0/0:14,0:14:36:0,36,439 0/1:12,6:18:99:196,0,283 0/1:4,3:7:92:105,0,92 +chr22 45218223 rs136662 C T 3228.29 . AC=7;AF=0.875;AN=8;BaseQRankSum=4.221;DB;DP=106;Dels=0.05;FS=18.930;HaplotypeScore=1.7663;MLEAC=8;MLEAF=1.00;MQ=34.32;MQ0=0;MQRankSum=0.910;QD=30.46;ReadPosRankSum=0.841;SB=-3.901e+01 GT:AD:DP:GQ:PL 1/1:1,22:23:66:827,66,0 0/1:5,22:27:0:752,0,0 1/1:2,21:23:42:768,42,0 1/1:2,26:28:49:920,49,0 +chr22 45255727 rs2349855 G C 241.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.669;DB;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.6241;MLEAC=3;MLEAF=0.375;MQ=22.73;MQ0=0;MQRankSum=0.751;QD=5.14;ReadPosRankSum=0.561;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,6:15:90:90,0,184 0/0:17,0:17:24:0,24,287 0/1:6,8:14:31:68,0,31 0/1:11,7:18:39:127,0,39 +chr22 45297986 rs12159449 C T 437.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.266;DB;DP=61;Dels=0.00;FS=16.658;HaplotypeScore=3.7396;MLEAC=3;MLEAF=0.375;MQ=25.97;MQ0=0;MQRankSum=1.378;QD=10.95;ReadPosRankSum=0.559;SB=-3.950e-03 GT:AD:DP:GQ:PL 0/1:7,2:9:48:48,0,61 0/0:21,0:21:33:0,33,395 0/1:10,8:18:12:255,0,12 0/1:6,7:13:69:178,0,69 +chr22 45682975 rs2673087 A G 3233.06 . AC=7;AF=0.875;AN=8;BaseQRankSum=2.692;DB;DP=116;Dels=0.03;FS=17.864;HaplotypeScore=1.7206;MLEAC=7;MLEAF=0.875;MQ=33.94;MQ0=0;MQRankSum=-0.331;QD=27.87;ReadPosRankSum=2.076;SB=-1.364e-02 GT:AD:DP:GQ:PL 0/1:17,14:31:99:431,0,345 1/1:1,19:20:57:726,57,0 1/1:2,30:32:32:1068,32,0 1/1:1,29:30:87:1054,87,0 +chr22 45745588 . A T 206.29 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.169;DP=51;Dels=0.00;FS=2.795;HaplotypeScore=2.8982;MLEAC=3;MLEAF=0.500;MQ=28.86;MQ0=0;MQRankSum=-2.304;QD=4.39;ReadPosRankSum=1.028;SB=-1.454e-02 GT:AD:DP:GQ:PL 0/1:4,7:11:20:149,0,20 0/1:16,3:19:29:29,0,255 0/1:14,3:17:67:67,0,219 ./. +chr22 45911993 . G C 30.02 . AC=4;AF=1.00;AN=4;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=25.39;MQ0=0;QD=15.01;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:27,3,0 ./. 1/1:0,1:1:3:36,3,0 ./. +chr22 46685807 . GGC G 331.76 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.114;DP=81;FS=16.221;HaplotypeScore=21.1272;MLEAC=3;MLEAF=0.375;MQ=23.96;MQ0=0;MQRankSum=0.055;QD=5.44;ReadPosRankSum=-1.661;SB=8.835e-03 GT:AD:DP:GQ:PL 0/1:8,2:7:65:65,0,151 0/1:20,6:13:99:114,0,362 0/0:17,2:11:27:0,27,424 0/1:11,9:11:99:205,0,181 +chr22 46760663 . A G 42.87 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.057;DP=22;Dels=0.00;FS=6.284;HaplotypeScore=3.0176;MLEAC=2;MLEAF=0.250;MQ=29.58;MQ0=0;MQRankSum=0.736;QD=4.29;ReadPosRankSum=-2.095;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:54:57,0,54 1/1:1,1:2:3:28,3,0 0/0:5,0:5:6:0,6,57 0/0:7,0:7:12:0,12,135 +chr22 48408809 . C G 130.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.812;DP=74;Dels=0.03;FS=2.344;HaplotypeScore=5.1048;MLEAC=4;MLEAF=0.500;MQ=25.04;MQ0=0;MQRankSum=2.089;QD=1.76;ReadPosRankSum=1.812;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:16,1:17:27:27,0,67 0/1:19,3:22:61:61,0,139 0/1:12,2:14:46:46,0,55 0/1:17,2:19:39:39,0,172 +chr22 48541815 rs1467904 G T 85.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.537;DB;DP=9;Dels=0.00;FS=7.782;HaplotypeScore=0.7340;MLEAC=4;MLEAF=1.00;MQ=22.04;MQ0=0;MQRankSum=1.537;QD=14.20;ReadPosRankSum=0.406;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:41,3,0 ./. 1/1:3,2:5:6:78,6,0 ./. +chr22 48945650 rs77491306 G A 35.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.231;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.1446;MLEAC=4;MLEAF=0.500;MQ=28.66;MQ0=0;MQRankSum=1.231;QD=11.75;ReadPosRankSum=0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,36 0/0:1,0:1:3:0,3,29 1/1:0,1:1:3:41,3,0 1/1:1,1:2:3:35,3,0 +chr22 49290550 rs28533249 G A 749.03 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.816;DB;DP=70;Dels=0.01;FS=14.111;HaplotypeScore=0.6086;MLEAC=5;MLEAF=0.625;MQ=33.28;MQ0=0;MQRankSum=1.084;QD=10.70;ReadPosRankSum=-0.344;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,5:17:99:126,0,384 1/1:6,11:17:7:387,7,0 0/1:16,6:22:99:190,0,360 0/1:10,3:13:90:90,0,242 +chr22 49800467 rs136772 G A 31.02 . AC=4;AF=1.00;AN=4;BaseQRankSum=1.589;DB;DP=9;Dels=0.00;FS=14.472;HaplotypeScore=0.3943;MLEAC=4;MLEAF=1.00;MQ=13.47;MQ0=0;MQRankSum=1.589;QD=3.45;ReadPosRankSum=1.589;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:5,1:6:3:30,3,0 1/1:2,1:3:3:34,3,0 ./. +chr22 50318927 rs9616216 T C 364.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.520;DB;DP=48;Dels=0.00;FS=2.667;HaplotypeScore=1.3675;MLEAC=3;MLEAF=0.375;MQ=27.41;MQ0=0;MQRankSum=1.586;QD=10.42;ReadPosRankSum=-0.317;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:33:0,33,345 0/1:6,8:14:40:187,0,40 0/1:9,6:15:99:166,0,200 0/1:4,2:6:55:55,0,59 +chr22 50321037 . A C 60.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.270;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.7161;MLEAC=1;MLEAF=0.125;MQ=37.93;MQ0=0;MQRankSum=-3.196;QD=1.74;ReadPosRankSum=0.891;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,138,1776 0/0:45,1:46:86:0,86,1416 0/0:41,0:41:99:0,114,1488 0/1:29,6:35:97:97,0,926 +chr22 50356745 . C A 35.93 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.794;DP=18;Dels=0.00;FS=2.869;HaplotypeScore=1.6904;MLEAC=1;MLEAF=0.125;MQ=33.56;MQ0=0;MQRankSum=-1.227;QD=8.98;ReadPosRankSum=0.505;SB=0.484 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,85 0/0:6,1:7:18:0,18,225 0/0:3,0:3:6:0,6,83 1/1:2,2:4:6:76,6,0 +chr22 50631978 . G C 32.02 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.474;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=4.5443;MLEAC=3;MLEAF=0.375;MQ=30.81;MQ0=0;MQRankSum=-1.732;QD=0.78;ReadPosRankSum=-1.330;SB=0.246 GT:AD:DP:GQ:PL 0/1:18,4:22:51:51,0,311 0/0:24,3:27:2:0,2,403 0/1:17,2:19:19:19,0,402 0/0:16,1:17:2:0,2,380 +chr22 50649239 . A C 71.95 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.690;DP=134;Dels=0.01;FS=18.358;HaplotypeScore=5.4323;MLEAC=3;MLEAF=0.375;MQ=31.64;MQ0=0;MQRankSum=-1.638;QD=0.77;ReadPosRankSum=-3.040;SB=-1.594e-01 GT:AD:DP:GQ:PL 0/0:39,1:40:62:0,62,1044 0/1:30,3:33:16:16,0,672 0/1:27,3:31:45:45,0,461 0/1:25,4:29:54:54,0,258 +chr22 50655482 . C T 141.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.896;DP=68;Dels=0.00;FS=16.730;HaplotypeScore=4.1867;MLEAC=2;MLEAF=0.250;MQ=31.85;MQ0=0;MQRankSum=-2.052;QD=4.29;ReadPosRankSum=1.272;SB=-5.435e-01 GT:AD:DP:GQ:PL 0/1:15,7:22:99:170,0,430 0/1:10,1:11:12:12,0,176 0/0:17,1:18:13:0,13,450 0/0:16,0:17:24:0,24,281 +chr22 50658020 . G A 66.20 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.091;DP=40;Dels=0.00;FS=5.256;HaplotypeScore=2.8842;MLEAC=3;MLEAF=0.375;MQ=24.63;MQ0=0;MQRankSum=0.578;QD=2.14;ReadPosRankSum=2.526;SB=-9.714e-01 GT:AD:DP:GQ:PL 0/1:4,3:7:41:87,0,41 0/0:9,0:9:3:0,3,32 0/1:11,2:13:3:3,0,150 0/1:10,1:11:15:15,0,78 +chr22 50659573 . G T 34.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.690;DP=248;Dels=0.00;FS=94.131;HaplotypeScore=8.9971;MLEAC=1;MLEAF=0.125;MQ=14.32;MQ0=0;MQRankSum=3.460;QD=0.58;ReadPosRankSum=-0.419;SB=0.215 GT:AD:DP:GQ:PL 0/0:52,6:58:36:0,36,371 0/0:59,6:65:24:0,24,270 0/0:62,4:66:21:0,21,200 0/1:54,4:59:70:70,0,163 +chr22 50660406 . G C 46.09 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.408;DP=119;Dels=0.00;FS=15.239;HaplotypeScore=1.9848;MLEAC=1;MLEAF=0.125;MQ=34.81;MQ0=0;MQRankSum=0.652;QD=1.65;ReadPosRankSum=-1.669;SB=-2.942e+00 GT:AD:DP:GQ:PL 0/0:30,1:31:37:0,37,811 0/1:23,5:28:82:82,0,598 0/0:33,2:35:44:0,44,997 0/0:23,2:25:11:0,11,595 +chr22 50684071 . A C 111.70 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.326;DP=39;Dels=0.00;FS=15.841;HaplotypeScore=2.4366;MLEAC=4;MLEAF=0.500;MQ=22.08;MQ0=0;MQRankSum=1.331;QD=4.14;ReadPosRankSum=2.435;SB=-1.239e-02 GT:AD:DP:GQ:PL 1/1:4,3:7:6:60,6,0 0/1:6,2:8:37:37,0,115 0/0:11,1:12:6:0,6,55 0/1:8,4:12:30:59,0,30 +chr22 50687785 . C T 32.24 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.501;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.7353;MLEAC=3;MLEAF=0.375;MQ=27.77;MQ0=0;MQRankSum=-2.003;QD=0.92;ReadPosRankSum=1.614;SB=-2.047e-01 GT:AD:DP:GQ:PL 0/1:13,2:15:23:23,0,256 0/1:9,2:12:40:40,0,60 0/0:18,0:18:24:0,24,265 0/1:7,1:8:12:12,0,122 +chr22 50704973 . G A 332.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.110;DP=57;Dels=0.00;FS=39.627;HaplotypeScore=4.8900;MLEAC=4;MLEAF=0.500;MQ=25.12;MQ0=0;MQRankSum=-3.494;QD=5.83;ReadPosRankSum=2.925;SB=0.211 GT:AD:DP:GQ:PL 0/1:9,3:12:55:70,0,55 0/1:5,7:12:71:128,0,71 0/1:15,5:20:77:77,0,210 0/1:6,6:13:69:100,0,69 +chr22 50718387 . A C 149.31 . AC=6;AF=0.750;AN=8;BaseQRankSum=-1.177;DP=39;Dels=0.00;FS=3.128;HaplotypeScore=5.2298;MLEAC=6;MLEAF=0.750;MQ=21.96;MQ0=0;MQRankSum=1.232;QD=3.83;ReadPosRankSum=3.093;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:6,2:8:6:74,6,0 0/1:10,3:13:31:31,0,62 0/1:5,5:10:17:62,0,17 1/1:7,1:8:3:25,3,0 +chr22 50727309 . G A 126.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.757;DP=42;Dels=0.00;FS=34.963;HaplotypeScore=4.3296;MLEAC=4;MLEAF=0.500;MQ=28.11;MQ0=0;MQRankSum=-1.181;QD=3.01;ReadPosRankSum=2.272;SB=-1.050e+00 GT:AD:DP:GQ:PL 0/1:8,3:11:63:63,0,149 0/1:8,2:10:29:29,0,193 0/1:8,3:11:44:44,0,137 0/1:7,3:10:33:33,0,134 +chr22 50757348 rs62241232 G A 2728.54 . AC=7;AF=0.875;AN=8;BaseQRankSum=4.474;DB;DP=110;Dels=0.03;FS=2.080;HaplotypeScore=3.2228;MLEAC=7;MLEAF=0.875;MQ=31.21;MQ0=0;MQRankSum=1.276;QD=24.80;ReadPosRankSum=0.450;SB=-1.660e+02 GT:AD:DP:GQ:PL 0/1:12,14:26:99:430,0,149 1/1:4,23:27:66:802,66,0 1/1:4,21:25:34:712,34,0 1/1:3,26:29:39:829,39,0 +chr22 50874893 rs13054572 C T 89.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=1.599;DB;DP=16;Dels=0.00;FS=6.818;HaplotypeScore=1.1542;MLEAC=3;MLEAF=0.375;MQ=21.15;MQ0=0;MQRankSum=2.359;QD=14.88;ReadPosRankSum=-0.289;SB=3.02 GT:AD:DP:GQ:PL 0/0:5,0:5:6:0,6,60 0/0:5,0:5:3:0,3,26 1/1:1,1:2:3:39,3,0 0/1:1,3:4:15:91,0,15 +chr22 50897996 . C T 40.37 . AC=2;AF=0.333;AN=6;BaseQRankSum=1.057;DP=25;Dels=0.00;FS=5.656;HaplotypeScore=1.2538;MLEAC=2;MLEAF=0.333;MQ=20.48;MQ0=0;MQRankSum=0.141;QD=2.02;ReadPosRankSum=-0.775;SB=0.075 GT:AD:DP:GQ:PL 0/1:6,1:7:14:14,0,64 0/0:4,0:4:3:0,3,23 0/1:7,6:13:63:63,0,104 ./. +chr22 50898729 . G A 67.52 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.572;DP=76;Dels=0.01;FS=40.372;HaplotypeScore=14.3862;MLEAC=4;MLEAF=0.500;MQ=19.77;MQ0=0;MQRankSum=1.187;QD=0.89;ReadPosRankSum=2.343;SB=-2.033e+00 GT:AD:DP:GQ:PL 0/1:18,3:21:59:59,0,130 0/1:18,2:20:16:16,0,75 0/1:14,3:18:28:28,0,112 0/1:14,2:16:6:6,0,158 +chr22 50921268 . TG T 85.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.817;DP=24;FS=11.228;HaplotypeScore=15.3761;MLEAC=4;MLEAF=0.500;MQ=21.49;MQ0=0;MQRankSum=0.978;QD=4.51;RPA=3,2;RU=G;ReadPosRankSum=-0.271;SB=2.86;STR GT:AD:DP:GQ:PL 0/0:5,0:4:12:0,12,149 0/1:7,2:4:36:50,0,36 0/1:5,1:3:18:18,0,65 1/1:2,2:2:6:72,6,0 +chr22 50942188 . G C 59.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.464;DP=75;Dels=0.00;FS=7.776;HaplotypeScore=13.9279;MLEAC=3;MLEAF=0.375;MQ=23.02;MQ0=0;MQRankSum=-0.672;QD=1.12;ReadPosRankSum=1.726;SB=1.15 GT:AD:DP:GQ:PL 0/1:15,2:17:11:11,0,82 0/1:15,5:20:56:56,0,161 0/0:19,3:22:3:0,3,188 0/1:14,2:16:33:33,0,129 +chr22 50961353 . T C 37.18 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.470;DP=51;Dels=0.00;FS=2.722;HaplotypeScore=10.5835;MLEAC=2;MLEAF=0.250;MQ=21.63;MQ0=0;MQRankSum=1.973;QD=1.49;ReadPosRankSum=-0.282;SB=-1.109e+00 GT:AD:DP:GQ:PL 0/1:9,1:10:22:22,0,40 0/0:14,0:14:12:0,12,113 0/0:12,0:12:9:0,9,84 0/1:12,2:15:50:56,0,50 +chr22 50967517 . C T 40.80 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.066;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5814;MLEAC=2;MLEAF=0.250;MQ=34.55;MQ0=0;MQRankSum=-1.488;QD=1.51;ReadPosRankSum=0.289;SB=-2.106e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:18:0,18,220 0/1:9,3:12:53:53,0,219 0/1:13,2:15:29:29,0,379 0/0:11,0:11:12:0,12,138 +chr22 50967536 . T G 62.44 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.488;DP=50;Dels=0.00;FS=2.416;HaplotypeScore=1.4132;MLEAC=3;MLEAF=0.375;MQ=34.58;MQ0=0;MQRankSum=-0.496;QD=1.52;ReadPosRankSum=-1.009;SB=-1.327e-02 GT:AD:DP:GQ:PL 0/0:9,0:9:15:0,15,189 0/1:9,3:12:60:60,0,300 0/1:14,2:16:34:34,0,319 0/1:12,1:13:11:11,0,154 +chr22 51016226 . T G 347.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.584;DP=114;Dels=0.00;FS=52.946;HaplotypeScore=4.3446;MLEAC=4;MLEAF=0.500;MQ=29.10;MQ0=0;MQRankSum=-2.635;QD=3.05;ReadPosRankSum=-1.178;SB=-1.183e-02 GT:AD:DP:GQ:PL 0/1:22,4:26:72:72,0,515 0/1:23,5:28:99:110,0,377 0/1:24,4:28:56:56,0,569 0/1:20,12:32:99:152,0,305 +chr22 51048059 rs965618 A G 466.45 . AC=8;AF=1.00;AN=8;BaseQRankSum=1.295;DB;DP=28;Dels=0.00;FS=21.103;HaplotypeScore=2.9732;MLEAC=8;MLEAF=1.00;MQ=23.43;MQ0=0;MQRankSum=3.326;QD=16.66;ReadPosRankSum=1.015;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,5:8:15:163,15,0 1/1:5,5:10:15:166,15,0 1/1:2,2:4:6:51,6,0 1/1:1,5:6:12:125,12,0 +chr22 51048721 rs14136 G A 210.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.834;DB;DP=95;Dels=0.00;FS=2.033;HaplotypeScore=2.0931;MLEAC=1;MLEAF=0.125;MQ=30.32;MQ0=0;MQRankSum=-0.013;QD=12.41;ReadPosRankSum=-1.869;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/0:17,0:17:45:0,45,524 0/1:8,9:17:99:247,0,163 0/0:26,0:26:69:0,69,803 0/0:35,0:35:78:0,78,885 +chr22 51160561 . C A 61.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.506;DP=66;Dels=0.00;FS=2.356;HaplotypeScore=3.3301;MLEAC=3;MLEAF=0.375;MQ=30.76;MQ0=0;MQRankSum=-0.865;QD=1.23;ReadPosRankSum=-0.908;SB=1.05 GT:AD:DP:GQ:PL 0/1:10,3:13:66:66,0,150 0/1:15,2:17:33:33,0,271 0/1:18,2:20:3:3,0,507 0/0:15,1:16:9:0,9,371 +chr22 51193236 . T A 31.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.501;DP=208;Dels=0.00;FS=18.239;HaplotypeScore=3.4993;MLEAC=3;MLEAF=0.375;MQ=8.69;MQ0=0;MQRankSum=4.048;QD=0.20;ReadPosRankSum=-2.421;SB=2.30 GT:AD:DP:GQ:PL 0/0:51,1:52:3:0,3,34 0/1:47,2:50:12:12,0,79 0/1:54,3:57:40:40,0,40 0/1:47,1:49:19:20,0,19 +chrX 2928178 . A G 114.26 . AC=2;AF=0.333;AN=6;BaseQRankSum=-1.108;DP=59;Dels=0.00;FS=2.451;HaplotypeScore=8.1634;MLEAC=2;MLEAF=0.333;MQ=27.44;MQ0=0;MQRankSum=-0.997;QD=3.17;ReadPosRankSum=2.077;SB=-1.196e-02 GT:AD:DP:GQ:PL 0/0:15,0:15:39:0,39,427 0/1:11,6:17:99:107,0,191 0/1:16,3:19:46:46,0,226 ./. +chrX 3030877 rs12390419 C T 76 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.358;DB;DP=9;Dels=0.00;FS=8.451;HaplotypeScore=0.3222;MLEAC=4;MLEAF=0.667;MQ=24.20;MQ0=0;MQRankSum=1.231;QD=15.20;ReadPosRankSum=0.358;SB=5.21 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,39 1/1:2,2:4:6:75,6,0 ./. 1/1:0,1:1:3:40,3,0 +chrX 3635254 . C T 37.78 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.595;DP=54;Dels=0.02;FS=9.351;HaplotypeScore=1.9062;MLEAC=1;MLEAF=0.125;MQ=17.06;MQ0=0;MQRankSum=0.180;QD=1.51;ReadPosRankSum=-1.729;SB=-3.353e+01 GT:AD:DP:GQ:PL 0/0:6,0:6:3:0,3,24 0/1:15,8:24:12:73,0,12 0/0:13,0:13:12:0,12,147 0/0:10,0:10:12:0,12,134 +chrX 4482666 rs10218421 A G 124.85 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.380;DB;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.5961;MLEAC=5;MLEAF=0.833;MQ=32.50;MQ0=0;MQRankSum=0.720;QD=17.84;ReadPosRankSum=0.000;SB=-4.086e+01 GT:AD:DP:GQ:PL 0/0:2,0:2:3:0,3,44 1/1:1,2:4:6:82,6,0 1/1:1,2:3:6:83,6,0 ./. +chrX 9659766 rs2301675 G A 467.46 . AC=5;AF=0.625;AN=8;BaseQRankSum=2.307;DB;DP=77;Dels=0.00;FS=1.363;HaplotypeScore=8.2152;MLEAC=4;MLEAF=0.500;MQ=28.76;MQ0=0;MQRankSum=-2.892;QD=7.92;ReadPosRankSum=1.405;SB=-6.068e+01 GT:AD:DP:GQ:PL 0/0:18,0:18:45:0,45,589 0/1:20,8:28:99:116,0,402 1/1:6,9:15:15:180,15,0 1/1:5,11:16:2:219,2,0 +chrX 9841538 rs763375 G A 168.35 . AC=6;AF=1.00;AN=6;BaseQRankSum=0.736;DB;DP=8;Dels=0.00;FS=5.441;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=30.84;MQ0=0;MQRankSum=0.736;QD=28.06;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:9:123,9,0 1/1:0,1:1:3:42,3,0 1/1:1,1:2:3:39,3,0 ./. +chrX 10077886 . A G 44.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.388;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=9.4551;MLEAC=1;MLEAF=0.125;MQ=32.57;MQ0=0;MQRankSum=-2.946;QD=2.05;ReadPosRankSum=-1.803;SB=-1.696e+01 GT:AD:DP:GQ:PL 0/0:20,0:20:39:0,39,490 0/0:38,3:41:29:0,29,900 0/0:26,0:26:54:0,54,664 0/1:15,6:21:81:81,0,219 +chrX 10155471 . T C 212.88 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.138;DP=63;Dels=0.00;FS=2.695;HaplotypeScore=1.6332;MLEAC=5;MLEAF=0.625;MQ=19.16;MQ0=0;MQRankSum=2.492;QD=3.38;ReadPosRankSum=0.215;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,3:10:10:77,0,10 0/1:21,4:26:64:64,0,121 0/1:15,5:21:55:91,0,55 1/1:5,1:6:3:23,3,0 +chrX 12414091 rs5979614 G A 34.12 . AC=1;AF=0.250;AN=4;BaseQRankSum=1.872;DB;DP=21;Dels=0.00;FS=9.863;HaplotypeScore=0.9810;MLEAC=1;MLEAF=0.250;MQ=20.02;MQ0=0;MQRankSum=-1.097;QD=11.37;ReadPosRankSum=-0.065;SB=0.250 GT:AD:DP:GQ:PL ./. 0/0:8,4:12:15:0,15,165 ./. 0/1:1,2:3:15:67,0,15 +chrX 12516839 . A G 280.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.250;DP=147;Dels=0.00;FS=66.759;HaplotypeScore=5.2305;MLEAC=4;MLEAF=0.500;MQ=28.44;MQ0=0;MQRankSum=0.227;QD=1.91;ReadPosRankSum=-2.537;SB=-1.533e-01 GT:AD:DP:GQ:PL 0/1:23,3:26:14:14,0,437 0/1:50,6:56:99:105,0,747 0/1:34,6:40:99:103,0,660 0/1:21,4:25:99:101,0,263 +chrX 12728346 rs4994371 T A 953.11 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.129;DB;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.3943;MLEAC=6;MLEAF=0.750;MQ=33.94;MQ0=0;MQRankSum=-2.380;QD=31.77;ReadPosRankSum=-0.904;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:8,0:8:21:0,21,295 1/1:1,19:20:54:661,54,0 1/1:0,8:8:24:277,24,0 1/1:0,2:2:6:66,6,0 +chrX 12734784 . T G 63.17 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.923;DP=132;Dels=0.01;FS=73.753;HaplotypeScore=30.1003;MLEAC=3;MLEAF=0.375;MQ=27.56;MQ0=0;MQRankSum=-1.532;QD=0.58;ReadPosRankSum=0.737;SB=-4.549e+00 GT:AD:DP:GQ:PL 0/1:27,3:31:1:1,0,364 0/1:29,5:38:60:60,0,430 0/1:32,6:39:40:40,0,570 0/0:20,3:23:2:0,2,375 +chrX 13061283 . T G 44.64 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.323;DP=135;Dels=0.00;FS=37.637;HaplotypeScore=5.4512;MLEAC=3;MLEAF=0.375;MQ=17.79;MQ0=0;MQRankSum=1.716;QD=0.60;ReadPosRankSum=1.347;SB=-1.900e+00 GT:AD:DP:GQ:PL 0/1:27,4:32:19:19,0,313 0/0:57,3:60:11:0,11,319 0/1:31,3:34:1:1,0,179 0/1:6,3:9:25:64,0,25 +chrX 13626364 . T A 283.22 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.362;DP=41;Dels=0.05;FS=2.393;HaplotypeScore=4.5102;MLEAC=3;MLEAF=0.375;MQ=27.07;MQ0=0;MQRankSum=-1.568;QD=9.14;ReadPosRankSum=3.195;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:9,1:10:12:0,12,128 0/1:4,10:14:71:207,0,71 0/1:7,5:12:81:81,0,144 1/1:2,1:3:3:39,3,0 +chrX 14861650 . GA G 279.43 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.725;DP=43;FS=0.000;HaplotypeScore=22.2006;MLEAC=6;MLEAF=0.750;MQ=24.99;MQ0=0;MQRankSum=1.359;QD=6.50;RPA=4,3;RU=A;ReadPosRankSum=-2.083;SB=-1.476e-03;STR GT:AD:DP:GQ:PL 1/1:6,4:6:4:110,4,0 0/1:7,6:8:67:91,0,67 0/1:7,4:8:60:103,0,60 1/1:4,0:4:4:27,4,0 +chrX 14868806 rs2905223 A G 271.94 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.000;DB;DP=15;Dels=0.00;FS=12.430;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=28.54;MQ0=0;MQRankSum=-0.934;QD=19.42;ReadPosRankSum=0.467;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,3:3:9:112,9,0 0/1:3,2:5:18:18,0,71 1/1:0,6:6:15:183,15,0 ./. +chrX 14882740 . A T 33.39 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.363;DP=91;Dels=0.00;FS=9.358;HaplotypeScore=1.3883;MLEAC=1;MLEAF=0.125;MQ=36.73;MQ0=0;MQRankSum=0.642;QD=1.52;ReadPosRankSum=-0.061;SB=-2.559e+00 GT:AD:DP:GQ:PL 0/0:15,1:16:5:0,5,315 0/0:43,0:43:99:0,102,1331 0/1:19,3:22:69:69,0,367 0/0:10,0:10:18:0,18,212 +chrX 15403030 rs6632532 G T 206.33 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.367;DB;DP=26;Dels=0.00;FS=2.793;HaplotypeScore=1.7807;MLEAC=5;MLEAF=0.625;MQ=30.84;MQ0=0;MQRankSum=1.370;QD=11.46;ReadPosRankSum=-0.434;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:7,0:8:18:0,18,213 0/1:9,1:10:11:11,0,168 1/1:1,5:6:15:202,15,0 1/1:1,1:2:3:41,3,0 +chrX 15607650 rs971249 T C 1849.89 . AC=7;AF=0.875;AN=8;BaseQRankSum=1.040;DB;DP=86;Dels=0.01;FS=6.243;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=31.65;MQ0=0;MQRankSum=-0.407;QD=21.51;ReadPosRankSum=1.357;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,24:25:60:739,60,0 0/1:18,14:32:99:386,0,552 1/1:1,20:21:54:662,54,0 1/1:4,3:7:9:107,9,0 +chrX 16915963 . T A 87.85 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.134;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=2.4125;MLEAC=5;MLEAF=0.833;MQ=18.40;MQ0=0;MQRankSum=1.788;QD=6.27;ReadPosRankSum=0.380;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:5,2:7:6:63,6,0 ./. 1/1:3,3:6:6:65,6,0 0/0:4,0:4:3:0,3,42 +chrX 17746254 . A T 172.11 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.118;DP=162;Dels=0.00;FS=61.512;HaplotypeScore=2.1685;MLEAC=3;MLEAF=0.375;MQ=39.52;MQ0=0;MQRankSum=-1.492;QD=1.22;ReadPosRankSum=0.782;SB=0.520 GT:AD:DP:GQ:PL 0/1:33,5:38:81:81,0,877 0/1:55,7:62:92:92,0,1442 0/1:36,5:41:42:42,0,1114 0/0:20,1:21:12:0,12,563 +chrX 18797074 . T C 48.39 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.531;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=13.1611;MLEAC=3;MLEAF=0.375;MQ=23.22;MQ0=0;MQRankSum=-0.849;QD=0.81;ReadPosRankSum=2.706;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:13,0:13:3:0,3,30 0/1:24,5:30:57:57,0,58 0/1:17,1:18:10:10,0,92 0/1:11,1:12:22:22,0,24 +chrX 18824596 rs11796620 G A 890.53 . AC=2;AF=0.250;AN=8;BaseQRankSum=3.139;DB;DP=162;Dels=0.01;FS=9.198;HaplotypeScore=7.8550;MLEAC=2;MLEAF=0.250;MQ=36.71;MQ0=0;MQRankSum=-1.916;QD=23.43;ReadPosRankSum=0.876;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:14,24:38:72:938,72,0 0/0:59,0:59:99:0,153,2022 0/0:41,0:41:99:0,108,1471 0/0:22,0:22:60:0,60,803 +chrX 18942681 . T A 203.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.750;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7239;MLEAC=4;MLEAF=0.500;MQ=29.03;MQ0=0;MQRankSum=-2.536;QD=2.91;ReadPosRankSum=1.774;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,3:15:58:58,0,109 0/1:20,4:24:83:83,0,263 0/1:16,2:18:26:26,0,192 0/1:10,3:13:79:79,0,130 +chrX 19410683 . C G 252.72 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.163;DP=75;Dels=0.00;FS=5.121;HaplotypeScore=4.1056;MLEAC=4;MLEAF=0.500;MQ=28.95;MQ0=0;MQRankSum=0.063;QD=3.37;ReadPosRankSum=1.991;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,2:17:42:42,0,234 0/1:26,4:31:88:88,0,234 0/1:16,4:20:80:80,0,134 0/1:4,3:7:12:85,0,12 +chrX 19725324 rs113856322 A G 387.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.016;DB;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.6654;MLEAC=1;MLEAF=0.125;MQ=37.89;MQ0=0;MQRankSum=-1.358;QD=12.52;ReadPosRankSum=0.089;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:33:0,33,445 0/1:18,13:31:99:424,0,614 0/0:18,0:18:54:0,54,727 0/0:22,0:22:57:0,57,743 +chrX 20204461 rs12009120 G T 799.09 . AC=5;AF=0.625;AN=8;BaseQRankSum=3.336;DB;DP=63;Dels=0.00;FS=5.521;HaplotypeScore=1.0254;MLEAC=5;MLEAF=0.625;MQ=31.42;MQ0=0;MQRankSum=-0.679;QD=17.37;ReadPosRankSum=0.252;SB=-4.060e+02 GT:AD:DP:GQ:PL 0/0:17,0:17:45:0,45,545 0/1:16,13:29:99:394,0,343 1/1:2,9:12:27:306,27,0 1/1:1,4:5:12:150,12,0 +chrX 21874924 . C G 937.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.946;DP=95;Dels=0.00;FS=95.141;HaplotypeScore=5.4109;MLEAC=4;MLEAF=0.500;MQ=33.38;MQ0=0;MQRankSum=-2.668;QD=9.87;ReadPosRankSum=2.589;SB=0.027 GT:AD:DP:GQ:PL 0/1:12,7:19:99:210,0,193 0/1:16,11:29:99:308,0,274 0/1:15,11:26:99:234,0,219 0/1:12,9:21:99:228,0,173 +chrX 21875044 . A T 719.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.205;DP=115;Dels=0.00;FS=76.346;HaplotypeScore=0.9134;MLEAC=4;MLEAF=0.500;MQ=34.72;MQ0=0;MQRankSum=-0.190;QD=6.26;ReadPosRankSum=3.494;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:12,5:17:99:141,0,273 0/1:28,12:40:99:281,0,509 0/1:17,9:26:99:247,0,376 0/1:27,5:32:93:93,0,563 +chrX 22292034 . T C 75.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.466;DP=149;Dels=0.01;FS=46.932;HaplotypeScore=5.9982;MLEAC=3;MLEAF=0.375;MQ=35.44;MQ0=0;MQRankSum=0.985;QD=0.64;ReadPosRankSum=-0.621;SB=-2.132e-02 GT:AD:DP:GQ:PL 0/0:31,0:31:69:0,69,848 0/1:58,6:64:29:29,0,1555 0/1:26,4:30:60:60,0,732 0/1:20,2:23:30:30,0,436 +chrX 23018254 rs151314033 G C 120.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.718;DB;DP=49;Dels=0.04;FS=9.745;HaplotypeScore=4.7625;MLEAC=3;MLEAF=0.375;MQ=28.37;MQ0=0;MQRankSum=0.465;QD=2.81;ReadPosRankSum=1.141;SB=-3.751e+00 GT:AD:DP:GQ:PL 0/1:11,3:14:29:78,0,29 0/1:11,2:14:49:53,0,49 0/1:13,2:15:31:31,0,118 0/0:4,0:4:3:0,3,39 +chrX 23019611 . T C 118.56 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.787;DP=119;Dels=0.00;FS=68.861;HaplotypeScore=8.0330;MLEAC=3;MLEAF=0.375;MQ=32.65;MQ0=0;MQRankSum=-3.261;QD=1.33;ReadPosRankSum=-0.326;SB=0.103 GT:AD:DP:GQ:PL 0/0:28,2:30:8:0,8,775 0/1:48,6:55:45:45,0,1116 0/1:18,6:25:88:88,0,431 0/1:6,2:9:28:28,0,164 +chrX 23704459 . C G 47.33 . AC=2;AF=0.333;AN=6;BaseQRankSum=-0.349;DP=40;Dels=0.03;FS=2.605;HaplotypeScore=9.9087;MLEAC=2;MLEAF=0.333;MQ=25.91;MQ0=0;MQRankSum=-0.262;QD=2.37;ReadPosRankSum=0.873;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,2:7:44:44,0,45 0/0:18,0:18:18:0,18,187 0/1:10,3:13:34:42,0,34 ./. +chrX 24005991 . G C 116.52 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.543;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=12.8599;MLEAC=4;MLEAF=0.500;MQ=18.67;MQ0=0;MQRankSum=2.399;QD=2.99;ReadPosRankSum=-1.177;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:13,2:15:12:12,0,60 0/1:12,6:19:61:120,0,61 0/0:11,0:11:6:0,6,51 1/1:3,1:4:3:27,3,0 +chrX 24331346 . T C 65.25 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.848;DP=84;Dels=0.00;FS=29.937;HaplotypeScore=2.2746;MLEAC=4;MLEAF=0.500;MQ=13.68;MQ0=0;MQRankSum=1.910;QD=0.95;ReadPosRankSum=0.129;SB=-1.184e-02 GT:AD:DP:GQ:PL 1/1:10,3:14:3:38,3,0 0/1:30,3:33:49:49,0,96 0/1:20,1:22:21:21,0,51 0/0:15,0:15:6:0,6,67 +chrX 24861834 . T G 51.28 . AC=2;AF=0.500;AN=4;BaseQRankSum=0.296;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=2.8308;MLEAC=2;MLEAF=0.500;MQ=27.98;MQ0=0;MQRankSum=0.731;QD=3.66;ReadPosRankSum=1.214;SB=2.98 GT:AD:DP:GQ:PL 0/1:3,1:5:23:26,0,23 0/1:7,2:9:60:60,0,69 ./. ./. +chrX 26158233 rs5944319 C A 36.35 . AC=1;AF=0.125;AN=8;BaseQRankSum=0.296;DB;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=32.53;MQ0=0;MQRankSum=-2.166;QD=9.09;ReadPosRankSum=-0.296;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:4,0:4:12:0,12,149 0/1:1,3:4:30:71,0,30 0/0:2,0:2:3:0,3,42 0/0:1,0:1:3:0,3,29 +chrX 29935572 . T A 88.57 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.806;DP=36;Dels=0.00;FS=2.682;HaplotypeScore=3.5069;MLEAC=3;MLEAF=0.500;MQ=24.18;MQ0=0;MQRankSum=0.184;QD=2.53;ReadPosRankSum=0.553;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:33:94,0,33 0/1:17,1:18:12:12,0,115 0/1:4,1:5:21:21,0,50 ./. +chrX 30577874 . T C 82.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.633;DP=107;Dels=0.00;FS=9.708;HaplotypeScore=2.1806;MLEAC=2;MLEAF=0.250;MQ=36.01;MQ0=0;MQRankSum=-1.501;QD=2.06;ReadPosRankSum=-0.750;SB=-2.694e+00 GT:AD:DP:GQ:PL 0/0:25,2:27:4:0,4,708 0/0:40,0:40:99:0,108,1360 0/1:25,3:28:27:27,0,693 0/1:8,4:12:96:96,0,203 +chrX 30853341 . A T 162.61 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.982;DP=130;Dels=0.00;FS=61.741;HaplotypeScore=2.0764;MLEAC=4;MLEAF=0.500;MQ=35.24;MQ0=0;MQRankSum=-4.578;QD=1.25;ReadPosRankSum=1.486;SB=-3.573e-02 GT:AD:DP:GQ:PL 0/1:26,6:32:85:85,0,654 0/1:47,8:55:65:65,0,1414 0/1:30,3:33:22:22,0,624 0/1:7,3:10:33:33,0,116 +chrX 31090057 . T G 64.06 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.831;DP=26;Dels=0.00;FS=2.398;HaplotypeScore=3.7830;MLEAC=5;MLEAF=0.625;MQ=19.25;MQ0=0;MQRankSum=0.689;QD=3.37;ReadPosRankSum=-0.380;SB=4.24 GT:AD:DP:GQ:PL 0/1:4,1:5:21:21,0,25 1/1:7,1:8:3:33,3,0 0/0:7,0:7:3:0,3,40 1/1:3,3:6:6:53,6,0 +chrX 32197017 rs2606681 G A 38.01 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=0;MQRankSum=-0.736;QD=12.67;ReadPosRankSum=0.736;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:1,2:3:33:68,0,33 ./. ./. +chrX 32223980 rs2606682 T C 75.65 . AC=3;AF=0.500;AN=6;BaseQRankSum=0.342;DB;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=0.3222;MLEAC=3;MLEAF=0.500;MQ=17.36;MQ0=0;MQRankSum=1.513;QD=6.30;ReadPosRankSum=-1.122;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:6,0:6:6:0,6,43 0/1:4,4:8:28:71,0,28 ./. 1/1:0,3:3:6:45,6,0 +chrX 34148763 . G A 39.14 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.799;DP=107;Dels=0.03;FS=26.621;HaplotypeScore=6.8493;MLEAC=3;MLEAF=0.375;MQ=16.50;MQ0=0;MQRankSum=-0.931;QD=0.48;ReadPosRankSum=0.189;SB=3.45 GT:AD:DP:GQ:PL 0/1:14,5:19:12:12,0,75 0/1:31,6:37:58:59,0,58 0/1:22,2:24:10:10,0,73 0/0:24,0:24:12:0,12,129 +chrX 37587446 . C G 30.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-1.284;DP=122;Dels=0.00;FS=14.794;HaplotypeScore=2.5563;MLEAC=1;MLEAF=0.125;MQ=35.55;MQ0=0;MQRankSum=-0.094;QD=0.88;ReadPosRankSum=-2.591;SB=-4.669e+00 GT:AD:DP:GQ:PL 0/0:25,0:25:48:0,48,613 0/0:45,2:47:30:0,30,1213 0/1:30,4:34:66:66,0,521 0/0:16,0:16:21:0,21,264 +chrX 37660625 . T C 93.55 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.931;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.7395;MLEAC=2;MLEAF=0.250;MQ=38.05;MQ0=0;MQRankSum=1.275;QD=0.92;ReadPosRankSum=0.640;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:59,1:60:99:0,103,1498 0/0:89,4:93:57:0,57,1690 0/1:53,5:58:59:59,0,833 0/1:39,5:44:76:76,0,789 +chrX 37665635 . T A 44.59 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.308;DP=154;Dels=0.00;FS=76.492;HaplotypeScore=0.4998;MLEAC=2;MLEAF=0.250;MQ=40.52;MQ0=0;MQRankSum=-3.113;QD=0.51;ReadPosRankSum=1.274;SB=0.234 GT:AD:DP:GQ:PL 0/0:36,2:38:37:0,37,1193 0/1:52,6:58:60:60,0,1573 0/1:27,3:30:26:26,0,811 0/0:28,0:28:75:0,75,1022 +chrX 40495933 . G T 34.81 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.354;DP=57;Dels=0.02;FS=16.122;HaplotypeScore=4.8064;MLEAC=4;MLEAF=0.500;MQ=27.99;MQ0=0;MQRankSum=-2.121;QD=0.61;ReadPosRankSum=1.450;SB=-1.304e+00 GT:AD:DP:GQ:PL 0/1:10,2:12:6:6,0,185 0/1:19,4:23:36:36,0,435 0/1:7,4:11:4:4,0,135 0/1:9,1:10:29:29,0,71 +chrX 41029145 . A C 35.63 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.455;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.4252;MLEAC=2;MLEAF=0.250;MQ=28.34;MQ0=0;MQRankSum=0.138;QD=0.63;ReadPosRankSum=-0.910;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:18,1:19:27:27,0,38 0/1:34,3:38:48:48,0,345 0/0:14,0:14:6:0,6,60 0/0:8,0:8:3:0,3,26 +chrX 41048603 . T G 91.35 . AC=4;AF=0.500;AN=8;BaseQRankSum=-4.548;DP=130;Dels=0.01;FS=80.681;HaplotypeScore=5.3320;MLEAC=4;MLEAF=0.500;MQ=32.38;MQ0=0;MQRankSum=-2.560;QD=0.70;ReadPosRankSum=1.595;SB=-2.724e+00 GT:AD:DP:GQ:PL 0/1:27,4:31:46:46,0,633 0/1:42,6:48:75:75,0,906 0/1:36,3:39:1:1,0,835 0/1:9,2:11:9:9,0,210 +chrX 41078515 . T G 388.59 . AC=4;AF=0.500;AN=8;BaseQRankSum=4.075;DP=50;Dels=0.00;FS=3.802;HaplotypeScore=3.4009;MLEAC=4;MLEAF=0.500;MQ=26.87;MQ0=0;MQRankSum=-1.219;QD=7.77;ReadPosRankSum=3.016;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:8,5:13:52:79,0,52 0/1:10,9:20:34:247,0,34 0/1:9,6:15:35:77,0,35 0/1:1,1:2:28:28,0,36 +chrX 44493009 rs4824511 T C 407.70 . AC=7;AF=0.875;AN=8;BaseQRankSum=3.466;DB;DP=29;Dels=0.00;FS=5.836;HaplotypeScore=1.1677;MLEAC=7;MLEAF=0.875;MQ=22.32;MQ0=0;MQRankSum=2.836;QD=14.06;ReadPosRankSum=0.315;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,3:4:9:96,9,0 0/1:8,3:11:14:56,0,14 1/1:2,6:8:15:170,15,0 1/1:1,5:6:12:129,12,0 +chrX 44494916 . C G 52.51 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.092;DP=47;Dels=0.00;FS=2.494;HaplotypeScore=0.7389;MLEAC=4;MLEAF=0.500;MQ=24.35;MQ0=0;MQRankSum=1.056;QD=1.12;ReadPosRankSum=0.139;SB=-4.601e-01 GT:AD:DP:GQ:PL 0/1:8,2:10:48:48,0,96 0/1:18,1:19:7:7,0,219 0/1:10,1:11:12:12,0,99 0/1:6,1:7:26:27,0,26 +chrX 44950131 . T A 95.81 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.153;DP=104;Dels=0.00;FS=2.314;HaplotypeScore=2.1891;MLEAC=3;MLEAF=0.375;MQ=25.55;MQ0=0;MQRankSum=1.674;QD=1.65;ReadPosRankSum=1.782;SB=-1.058e-02 GT:AD:DP:GQ:PL 0/1:17,3:20:64:64,0,146 0/0:45,1:46:36:0,36,632 0/1:30,3:33:49:49,0,303 0/1:4,1:5:26:26,0,36 +chrX 46585279 . A C 39.05 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.028;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.7993;MLEAC=2;MLEAF=0.250;MQ=23.60;MQ0=0;MQRankSum=1.241;QD=2.06;ReadPosRankSum=-1.407;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:7,2:9:23:52,0,23 0/0:13,1:14:12:0,12,109 0/0:11,0:11:3:0,3,40 0/1:9,1:10:27:27,0,61 +chrX 46951478 . T G 141.86 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.593;DP=35;Dels=0.00;FS=47.544;HaplotypeScore=0.9844;MLEAC=4;MLEAF=0.500;MQ=26.82;MQ0=0;MQRankSum=-0.323;QD=4.05;ReadPosRankSum=1.886;SB=0.449 GT:AD:DP:GQ:PL 0/1:9,2:11:52:52,0,85 0/1:7,5:12:90:90,0,112 0/1:7,1:8:11:11,0,88 0/1:3,1:4:30:31,0,30 +chrX 47273058 . C T 36.55 . AC=1;AF=0.167;AN=6;BaseQRankSum=0.862;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=18.7388;MLEAC=1;MLEAF=0.167;MQ=20.95;MQ0=0;MQRankSum=0.392;QD=1.66;ReadPosRankSum=1.254;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:6:0,6,70 0/1:18,4:22:36:70,0,36 0/0:17,1:18:3:0,3,23 ./. +chrX 47306896 . T C 62.25 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.287;DP=118;Dels=0.00;FS=6.378;HaplotypeScore=6.2656;MLEAC=2;MLEAF=0.250;MQ=28.33;MQ0=0;MQRankSum=-1.111;QD=1.56;ReadPosRankSum=-0.552;SB=-2.018e+01 GT:AD:DP:GQ:PL 0/1:24,5:29:90:90,0,323 0/0:44,1:45:54:0,54,858 0/0:33,0:33:60:0,60,653 0/1:10,1:11:13:13,0,190 +chrX 47483800 rs1048118 G A 187.17 . AC=2;AF=0.250;AN=8;BaseQRankSum=2.025;DB;DP=50;Dels=0.00;FS=14.183;HaplotypeScore=3.2357;MLEAC=2;MLEAF=0.250;MQ=27.58;MQ0=0;MQRankSum=0.506;QD=20.80;ReadPosRankSum=1.519;SB=0.363 GT:AD:DP:GQ:PL 1/1:2,7:9:21:234,21,0 0/0:18,0:18:30:0,30,330 0/0:14,0:14:24:0,24,285 0/0:9,0:9:12:0,12,152 +chrX 47755234 . C G 32.14 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.399;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.7844;MLEAC=3;MLEAF=0.375;MQ=32.91;MQ0=0;MQRankSum=-1.617;QD=0.64;ReadPosRankSum=2.037;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:14,1:15:7:7,0,227 0/1:15,3:18:57:57,0,242 0/1:16,1:17:9:9,0,132 0/0:9,0:9:12:0,12,125 +chrX 48054740 rs4824675 C G 801.28 . AC=6;AF=0.750;AN=8;BaseQRankSum=4.583;DB;DP=203;Dels=0.00;FS=1.325;HaplotypeScore=2.0744;MLEAC=6;MLEAF=0.750;MQ=15.17;MQ0=0;MQRankSum=-0.320;QD=3.95;ReadPosRankSum=3.994;SB=-4.350e+02 GT:AD:DP:GQ:PL 0/1:4,37:41:28:144,0,28 1/1:3,65:68:39:343,39,0 0/1:6,45:51:10:95,0,10 1/1:6,37:43:7:264,7,0 +chrX 48161114 rs6609701 G A 226.13 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.386;DB;DP=152;Dels=0.00;FS=10.383;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=9.76;MQ0=0;MQRankSum=1.419;QD=1.71;ReadPosRankSum=1.543;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:4,29:33:3:32,3,0 1/1:5,48:53:18:203,18,0 0/1:14,32:46:26:31,0,26 ./. +chrX 48382174 rs3048 G T 237.10 . AC=2;AF=0.250;AN=8;BaseQRankSum=-0.113;DB;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.250;MQ=33.91;MQ0=0;MQRankSum=1.054;QD=26.34;ReadPosRankSum=0.339;SB=-4.050e+01 GT:AD:DP:GQ:PL 1/1:1,7:8:21:284,21,0 0/0:17,0:17:45:0,45,562 0/0:6,0:7:15:0,15,203 0/0:9,0:9:21:0,21,245 +chrX 48652579 . G T 35.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.204;DP=80;Dels=0.01;FS=22.319;HaplotypeScore=9.4706;MLEAC=2;MLEAF=0.250;MQ=23.37;MQ0=0;MQRankSum=-0.968;QD=1.11;ReadPosRankSum=0.239;SB=0.740 GT:AD:DP:GQ:PL 0/1:11,2:14:45:45,0,53 0/0:30,0:30:48:0,48,518 0/0:18,0:18:21:0,21,248 0/1:12,4:17:32:32,0,245 +chrX 48664744 . G A 54.03 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.323;DP=45;Dels=0.02;FS=5.798;HaplotypeScore=13.8654;MLEAC=3;MLEAF=0.375;MQ=21.18;MQ0=0;MQRankSum=0.162;QD=1.59;ReadPosRankSum=0.108;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,3:8:22:22,0,58 0/1:12,3:17:53:53,0,94 0/0:9,2:11:6:0,6,86 0/1:7,1:8:21:21,0,21 +chrX 48858733 . T A 64.10 . AC=1;AF=0.167;AN=6;BaseQRankSum=-0.289;DP=40;Dels=0.00;FS=3.041;HaplotypeScore=8.0769;MLEAC=1;MLEAF=0.167;MQ=22.34;MQ0=0;MQRankSum=1.835;QD=3.77;ReadPosRankSum=0.289;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 0/1:13,4:17:9:97,0,9 0/0:11,0:11:3:0,3,28 0/0:6,0:6:3:0,3,24 +chrX 49034770 . G T 41.27 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.424;DP=23;Dels=0.00;FS=2.869;HaplotypeScore=5.1428;MLEAC=4;MLEAF=0.500;MQ=24.81;MQ0=0;MQRankSum=0.061;QD=2.58;ReadPosRankSum=-0.546;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,2:4:6:51,6,0 0/0:4,0:4:3:0,3,42 0/1:10,2:12:32:32,0,65 0/0:3,0:3:3:0,3,43 +chrX 49065700 rs185551369 G A 224.20 . AC=2;AF=0.250;AN=8;BaseQRankSum=1.199;DB;DP=40;Dels=0.00;FS=1.496;HaplotypeScore=0.1835;MLEAC=2;MLEAF=0.250;MQ=31.30;MQ0=0;MQRankSum=-0.780;QD=24.91;ReadPosRankSum=2.036;SB=-9.718e+01 GT:AD:DP:GQ:PL 1/1:1,8:9:24:271,24,0 0/0:18,0:18:39:0,39,499 0/0:6,0:6:9:0,9,124 0/0:7,0:7:15:0,15,180 +chrX 49068501 . T G 326.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.557;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.0281;MLEAC=4;MLEAF=0.500;MQ=28.55;MQ0=0;MQRankSum=-0.914;QD=4.35;ReadPosRankSum=1.985;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:17,6:23:99:153,0,283 0/1:22,5:27:89:89,0,176 0/1:13,5:18:99:107,0,178 0/1:6,1:7:20:20,0,103 +chrX 49142803 . G C 96.33 . AC=3;AF=0.500;AN=6;BaseQRankSum=-0.380;DP=21;Dels=0.00;FS=6.245;HaplotypeScore=3.2978;MLEAC=3;MLEAF=0.500;MQ=25.41;MQ0=0;MQRankSum=0.054;QD=4.82;ReadPosRankSum=2.766;SB=0.044 GT:AD:DP:GQ:PL ./. 0/1:4,2:7:50:50,0,50 0/1:5,3:8:62:67,0,62 0/1:4,1:5:18:18,0,52 +chrX 49454103 rs12836700 C T 455.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.981;DB;DP=248;Dels=0.00;FS=9.168;HaplotypeScore=5.0035;MLEAC=4;MLEAF=0.500;MQ=21.82;MQ0=0;MQRankSum=1.236;QD=1.84;ReadPosRankSum=-1.123;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:27,11:38:99:183,0,200 0/1:85,15:100:97:97,0,710 0/1:55,11:66:99:111,0,510 0/1:32,11:44:99:107,0,326 +chrX 49840556 . C G 39.29 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.316;DP=115;Dels=0.00;FS=46.779;HaplotypeScore=3.8819;MLEAC=1;MLEAF=0.125;MQ=38.34;MQ0=0;MQRankSum=-2.216;QD=1.16;ReadPosRankSum=0.066;SB=-2.975e+00 GT:AD:DP:GQ:PL 0/0:24,0:24:60:0,60,751 0/0:40,3:43:6:0,6,1193 0/1:29,5:34:75:75,0,898 0/0:14,0:14:39:0,39,489 +chrX 50085319 . T C 100.04 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.544;DP=86;Dels=0.00;FS=51.326;HaplotypeScore=14.3123;MLEAC=2;MLEAF=0.250;MQ=30.19;MQ0=0;MQRankSum=-1.890;QD=1.85;ReadPosRankSum=-0.129;SB=4.12 GT:AD:DP:GQ:PL 0/0:12,0:12:21:0,21,271 0/1:31,7:38:99:126,0,582 0/0:20,0:20:24:0,24,319 0/1:12,4:16:15:15,0,79 +chrX 50117983 . A T 76.36 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.393;DP=96;Dels=0.03;FS=48.693;HaplotypeScore=9.1751;MLEAC=3;MLEAF=0.375;MQ=29.51;MQ0=0;MQRankSum=-2.852;QD=1.16;ReadPosRankSum=-1.375;SB=-4.672e+00 GT:AD:DP:GQ:PL 0/0:16,1:17:0:0,0,277 0/1:30,5:35:70:70,0,627 0/1:25,4:29:44:44,0,540 0/0:11,1:12:3:0,3,298 +chrX 50143965 rs1934190 G C 96.15 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.475;DB;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9833;MLEAC=1;MLEAF=0.125;MQ=36.39;MQ0=0;MQRankSum=-1.727;QD=7.40;ReadPosRankSum=-1.511;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:11,0:11:30:0,30,381 0/1:8,5:13:99:132,0,273 0/0:11,0:11:30:0,30,392 0/0:3,0:3:9:0,9,129 +chrX 50146143 . G T 552.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=0.171;DP=124;Dels=0.00;FS=31.990;HaplotypeScore=12.4179;MLEAC=4;MLEAF=0.500;MQ=25.63;MQ0=0;MQRankSum=-0.465;QD=4.46;ReadPosRankSum=4.161;SB=0.319 GT:AD:DP:GQ:PL 0/1:18,7:25:99:150,0,216 0/1:32,12:44:99:263,0,215 0/1:25,5:30:72:72,0,270 0/1:19,6:25:46:110,0,46 +chrX 51934195 . C A 58.77 . AC=3;AF=0.375;AN=8;BaseQRankSum=-0.392;DP=43;Dels=0.02;FS=2.615;HaplotypeScore=2.3885;MLEAC=4;MLEAF=0.500;MQ=23.42;MQ0=0;MQRankSum=-0.343;QD=2.10;ReadPosRankSum=-1.177;SB=-1.285e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:20:45,0,20 0/0:14,1:15:1:0,1,200 0/1:9,3:12:34:34,0,100 0/1:8,1:9:20:20,0,96 +chrX 53172623 . C G 47.31 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.983;DP=101;Dels=0.01;FS=33.196;HaplotypeScore=8.7081;MLEAC=2;MLEAF=0.250;MQ=24.39;MQ0=0;MQRankSum=-2.182;QD=1.08;ReadPosRankSum=1.144;SB=-2.079e+00 GT:AD:DP:GQ:PL 0/1:17,6:23:6:6,0,231 0/0:39,3:42:40:0,40,635 0/1:14,5:20:80:80,0,169 0/0:11,4:15:21:0,21,228 +chrX 53631887 . T G 64.26 . AC=5;AF=0.833;AN=6;BaseQRankSum=-0.720;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.6092;MLEAC=5;MLEAF=0.833;MQ=22.64;MQ0=0;MQRankSum=0.000;QD=5.84;ReadPosRankSum=-1.380;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,1:1:3:27,3,0 0/1:6,2:8:29:49,0,29 ./. 1/1:1,1:2:3:26,3,0 +chrX 54264884 . G C 242.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.460;DP=98;Dels=0.01;FS=14.983;HaplotypeScore=6.6511;MLEAC=4;MLEAF=0.500;MQ=28.76;MQ0=0;MQRankSum=0.157;QD=2.48;ReadPosRankSum=0.315;SB=-1.290e-02 GT:AD:DP:GQ:PL 0/1:21,4:25:34:34,0,429 0/1:23,6:29:99:130,0,204 0/1:20,3:23:63:63,0,365 0/1:16,4:20:58:58,0,207 +chrX 54472668 . G C 51.84 . AC=3;AF=0.375;AN=8;BaseQRankSum=0.047;DP=21;Dels=0.00;FS=14.236;HaplotypeScore=3.1017;MLEAC=3;MLEAF=0.375;MQ=20.82;MQ0=0;MQRankSum=0.515;QD=4.71;ReadPosRankSum=2.107;SB=3.48 GT:AD:DP:GQ:PL 1/1:0,2:2:3:30,3,0 0/1:6,3:9:14:63,0,14 0/0:7,0:7:9:0,9,108 0/0:2,1:3:3:0,3,25 +chrX 54496361 . A G 77.19 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.963;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.0403;MLEAC=3;MLEAF=0.375;MQ=23.66;MQ0=0;MQRankSum=-1.963;QD=1.84;ReadPosRankSum=2.874;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:5,4:9:76:76,0,87 0/1:16,4:20:24:24,0,221 0/1:10,3:13:20:20,0,207 0/0:9,4:13:12:0,12,131 +chrX 54574737 . C T 149.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.349;DP=79;Dels=0.01;FS=41.227;HaplotypeScore=2.6666;MLEAC=4;MLEAF=0.500;MQ=23.08;MQ0=0;MQRankSum=3.162;QD=1.89;ReadPosRankSum=0.397;SB=-1.419e-01 GT:AD:DP:GQ:PL 0/1:18,3:21:78:78,0,79 0/1:30,2:32:22:22,0,226 0/1:13,2:15:35:35,0,126 0/1:8,2:10:22:57,0,22 +chrX 54953758 . G T 56.32 . AC=4;AF=0.667;AN=6;BaseQRankSum=-1.036;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=2.8649;MLEAC=4;MLEAF=0.667;MQ=22.17;MQ0=0;MQRankSum=0.633;QD=3.75;ReadPosRankSum=-0.741;SB=-1.476e-02 GT:AD:DP:GQ:PL ./. 0/1:4,2:6:32:52,0,32 0/1:2,1:5:21:21,0,47 1/1:3,1:4:3:22,3,0 +chrX 54953854 . A C 30.77 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.357;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=4.1773;MLEAC=2;MLEAF=0.250;MQ=24.74;MQ0=0;MQRankSum=0.251;QD=3.08;ReadPosRankSum=-0.854;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:4,2:6:22:51,0,22 0/0:7,0:7:18:0,18,175 0/0:7,0:7:18:0,18,198 0/1:2,1:3:21:21,0,24 +chrX 54957065 . T G 39.56 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.005;DP=70;Dels=0.00;FS=8.272;HaplotypeScore=6.0802;MLEAC=2;MLEAF=0.250;MQ=23.66;MQ0=0;MQRankSum=0.889;QD=1.47;ReadPosRankSum=-1.402;SB=-3.692e+00 GT:AD:DP:GQ:PL 0/1:13,2:15:37:37,0,207 0/0:22,0:22:45:0,45,460 0/0:21,0:21:27:0,27,283 0/1:10,2:12:25:44,0,25 +chrX 55661184 . T A 40.71 . AC=1;AF=0.125;AN=8;BaseQRankSum=2.569;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.125;MQ=20.37;MQ0=0;MQRankSum=-1.059;QD=1.13;ReadPosRankSum=-1.205;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:16,0:16:6:0,6,59 0/1:30,6:36:76:76,0,138 0/0:18,2:20:12:0,12,116 0/0:18,0:18:6:0,6,48 +chrX 56590724 . A G 66.38 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.808;DP=85;Dels=0.02;FS=2.737;HaplotypeScore=2.5303;MLEAC=3;MLEAF=0.375;MQ=30.26;MQ0=0;MQRankSum=-3.013;QD=0.98;ReadPosRankSum=-1.713;SB=-3.970e+00 GT:AD:DP:GQ:PL 0/0:16,1:17:16:0,16,509 0/1:25,6:31:84:84,0,448 0/1:20,2:22:1:1,0,564 0/1:10,3:13:21:21,0,276 +chrX 57704102 rs113416424 C A 33.21 . AC=3;AF=0.500;AN=6;BaseQRankSum=-1.713;DB;DP=20;Dels=0.00;FS=22.304;HaplotypeScore=1.2063;MLEAC=2;MLEAF=0.333;MQ=19.75;MQ0=0;MQRankSum=2.180;QD=4.74;ReadPosRankSum=-0.467;SB=6.00 GT:AD:DP:GQ:PL 1/1:1,1:2:3:36,3,0 0/0:8,0:8:15:0,15,134 0/1:3,2:5:37:37,0,43 ./. +chrX 62519603 . C T 108.41 . AC=7;AF=0.875;AN=8;BaseQRankSum=0.391;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=8.5371;MLEAC=7;MLEAF=0.875;MQ=16.44;MQ0=0;MQRankSum=0.533;QD=3.87;ReadPosRankSum=-2.096;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,2:5:6:72,6,0 1/1:3,4:7:3:33,3,0 0/1:6,1:7:17:17,0,18 1/1:6,2:8:3:27,3,0 +chrX 63405968 . T A 31.01 . AC=1;AF=0.125;AN=8;BaseQRankSum=-2.485;DP=116;Dels=0.03;FS=0.000;HaplotypeScore=2.6709;MLEAC=1;MLEAF=0.125;MQ=27.21;MQ0=0;MQRankSum=-3.129;QD=1.24;ReadPosRankSum=0.449;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:23,1:24:18:0,18,518 0/0:36,5:41:42:0,42,876 0/0:23,0:23:48:0,48,527 0/1:19,5:25:67:67,0,247 +chrX 65259893 rs41305393 C T 84.82 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.632;DB;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.6101;MLEAC=2;MLEAF=0.250;MQ=22.56;MQ0=0;MQRankSum=1.246;QD=12.12;ReadPosRankSum=0.632;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:2,5:7:12:129,12,0 0/0:22,0:22:36:0,36,350 0/0:12,0:12:18:0,18,199 0/0:8,0:8:6:0,6,72 +chrX 65295287 rs5918988 G A 186.64 . AC=5;AF=0.625;AN=8;BaseQRankSum=0.714;DB;DP=69;Dels=0.00;FS=5.663;HaplotypeScore=1.1205;MLEAC=5;MLEAF=0.625;MQ=23.04;MQ0=0;MQRankSum=-0.982;QD=3.89;ReadPosRankSum=-0.283;SB=-3.729e+01 GT:AD:DP:GQ:PL 0/0:21,0:21:36:0,36,420 0/1:18,3:21:6:6,0,317 1/1:5,9:14:3:37,3,0 1/1:4,9:13:15:191,15,0 +chrX 65393464 . T C 70.75 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.114;DP=58;Dels=0.00;FS=10.482;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=31.48;MQ0=0;MQRankSum=0.893;QD=1.47;ReadPosRankSum=0.736;SB=-2.681e+00 GT:AD:DP:GQ:PL 0/0:10,0:10:18:0,18,219 0/1:20,2:22:2:2,0,450 0/1:12,3:15:60:60,0,180 0/1:9,2:11:49:49,0,199 +chrX 67432011 . G A 428.66 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.189;DP=37;Dels=0.03;FS=22.368;HaplotypeScore=1.6960;MLEAC=4;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=3.518;QD=11.59;ReadPosRankSum=-0.607;SB=-2.969e+00 GT:AD:DP:GQ:PL 0/1:6,3:9:20:98,0,20 0/1:5,5:10:18:178,0,18 0/1:6,3:9:53:97,0,53 0/1:5,3:8:20:98,0,20 +chrX 69510310 . T A 74.08 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.139;DP=72;Dels=0.00;FS=12.860;HaplotypeScore=1.9252;MLEAC=4;MLEAF=0.500;MQ=21.52;MQ0=0;MQRankSum=1.511;QD=1.76;ReadPosRankSum=0.742;SB=-1.416e+00 GT:AD:DP:GQ:PL 0/1:10,2:12:43:43,0,79 0/0:27,3:30:1:0,1,271 0/1:12,1:13:11:11,0,141 0/1:13,4:17:60:60,0,197 +chrX 69510335 rs1199470 C T 89.42 . AC=5;AF=0.833;AN=6;BaseQRankSum=1.202;DB;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7161;MLEAC=5;MLEAF=0.833;MQ=13.44;MQ0=0;MQRankSum=2.758;QD=3.44;ReadPosRankSum=-0.212;SB=-5.315e+01 GT:AD:DP:GQ:PL ./. 1/1:13,2:15:6:60,6,0 1/1:5,1:6:3:43,3,0 0/1:4,1:5:17:25,0,17 +chrX 69572467 . C T 220.60 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.106;DP=55;Dels=0.02;FS=73.781;HaplotypeScore=17.3163;MLEAC=4;MLEAF=0.500;MQ=24.31;MQ0=0;MQRankSum=-1.139;QD=4.01;ReadPosRankSum=3.614;SB=-2.887e-01 GT:AD:DP:GQ:PL 0/1:9,2:11:39:39,0,53 0/1:11,10:21:99:156,0,107 0/1:10,3:13:44:44,0,51 0/1:6,3:9:24:24,0,38 +chrX 69649378 . C G 60.96 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.215;DP=61;Dels=0.00;FS=17.273;HaplotypeScore=1.8344;MLEAC=3;MLEAF=0.375;MQ=33.40;MQ0=0;MQRankSum=-3.137;QD=1.39;ReadPosRankSum=0.090;SB=-1.915e-02 GT:AD:DP:GQ:PL 0/1:11,4:15:56:56,0,352 0/1:20,3:23:32:32,0,494 0/0:17,0:17:30:0,30,376 0/1:4,2:6:16:16,0,75 +chrX 69672574 . C T 48.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.876;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=10.4004;MLEAC=4;MLEAF=1.00;MQ=15.52;MQ0=0;MQRankSum=0.361;QD=4.02;ReadPosRankSum=0.361;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:2,1:3:3:30,3,0 1/1:5,4:9:6:52,6,0 ./. +chrX 69771946 . C A 55.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.799;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.4972;MLEAC=4;MLEAF=0.500;MQ=32.21;MQ0=0;MQRankSum=-2.551;QD=2.65;ReadPosRankSum=-0.671;SB=-1.951e-01 GT:AD:DP:GQ:PL 0/1:9,2:11:31:31,0,179 0/0:19,0:19:39:0,39,442 0/1:6,1:7:11:11,0,156 1/1:1,2:3:6:59,6,0 +chrX 70148440 . T A 193.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-0.374;DP=41;Dels=0.05;FS=27.985;HaplotypeScore=3.0564;MLEAC=4;MLEAF=0.500;MQ=26.84;MQ0=0;MQRankSum=0.462;QD=4.72;ReadPosRankSum=1.606;SB=0.327 GT:AD:DP:GQ:PL 0/1:3,1:4:20:20,0,36 0/1:14,5:19:99:104,0,124 0/1:7,1:8:29:29,0,104 0/1:5,3:8:64:83,0,64 +chrX 70316491 . C T 33.68 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.380;DP=25;Dels=0.00;FS=2.823;HaplotypeScore=0.7226;MLEAC=2;MLEAF=0.250;MQ=29.91;MQ0=0;MQRankSum=-1.084;QD=2.41;ReadPosRankSum=-0.099;SB=-4.301e-01 GT:AD:DP:GQ:PL 0/0:6,0:6:9:0,9,93 0/1:5,3:8:51:51,0,79 0/1:4,2:6:23:23,0,37 0/0:5,0:5:6:0,6,67 +chrX 70329013 rs12841521 A G 36.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.381;DB;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5364;MLEAC=1;MLEAF=0.125;MQ=31.90;MQ0=0;MQRankSum=-0.352;QD=2.64;ReadPosRankSum=-0.832;SB=-1.120e-02 GT:AD:DP:GQ:PL 0/0:14,0:14:33:0,33,400 0/0:30,1:31:37:0,37,811 0/0:19,0:19:30:0,30,389 0/1:11,3:14:73:73,0,255 +chrX 70387152 . T G 167.83 . AC=3;AF=0.375;AN=8;BaseQRankSum=-4.477;DP=112;Dels=0.00;FS=44.925;HaplotypeScore=3.3442;MLEAC=3;MLEAF=0.375;MQ=36.20;MQ0=0;MQRankSum=-2.733;QD=2.02;ReadPosRankSum=1.364;SB=-4.736e-02 GT:AD:DP:GQ:PL 0/1:18,2:20:22:22,0,426 0/1:40,7:47:98:98,0,1201 0/0:29,0:29:75:0,75,961 0/1:12,4:16:91:91,0,434 +chrX 70511791 . A C 117.26 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.230;DP=65;Dels=0.00;FS=7.960;HaplotypeScore=1.9371;MLEAC=4;MLEAF=0.500;MQ=21.55;MQ0=0;MQRankSum=1.377;QD=2.21;ReadPosRankSum=-1.648;SB=1.32 GT:AD:DP:GQ:PL 0/0:11,0:12:6:0,6,79 0/1:22,4:28:99:105,0,210 0/1:14,2:16:20:20,0,36 1/1:8,1:9:3:35,3,0 +chrX 70756087 . C G 186.79 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.212;DP=101;Dels=0.00;FS=34.350;HaplotypeScore=1.1292;MLEAC=3;MLEAF=0.375;MQ=38.52;MQ0=0;MQRankSum=-2.324;QD=2.25;ReadPosRankSum=-2.225;SB=1.13 GT:AD:DP:GQ:PL 0/1:18,3:21:45:45,0,554 0/1:31,6:37:99:124,0,710 0/1:22,3:25:61:61,0,460 0/0:18,0:18:36:0,36,457 +chrX 71034798 . G GT 139.98 . AC=6;AF=0.750;AN=8;BaseQRankSum=-0.742;DP=16;FS=0.000;HaplotypeScore=9.7445;MLEAC=7;MLEAF=0.875;MQ=18.72;MQ0=0;MQRankSum=0.742;QD=11.66;ReadPosRankSum=0.742;SB=-1.476e-03 GT:AD:DP:GQ:PL 1/1:1,2:1:3:25,3,0 0/0:3,0:1:3:0,3,19 1/1:2,2:2:6:63,6,0 1/1:3,2:3:9:104,9,0 +chrX 71350370 . C G 39.58 . AC=2;AF=0.250;AN=8;BaseQRankSum=-2.434;DP=190;Dels=0.01;FS=32.527;HaplotypeScore=8.7843;MLEAC=2;MLEAF=0.250;MQ=26.05;MQ0=0;MQRankSum=1.429;QD=0.52;ReadPosRankSum=1.255;SB=1.19 GT:AD:DP:GQ:PL 0/1:30,3:33:42:42,0,335 0/0:71,3:74:32:0,32,1011 0/1:37,5:42:39:39,0,578 0/0:39,1:40:20:0,20,434 +chrX 71351519 rs12390168 C A 63.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=0.358;DB;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=20.66;MQ0=0;MQRankSum=1.231;QD=12.64;ReadPosRankSum=-0.358;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. ./. 1/1:2,2:4:6:68,6,0 1/1:0,1:1:3:29,3,0 +chrX 71380038 . T G 39.48 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.933;DP=184;Dels=0.00;FS=83.129;HaplotypeScore=1.2436;MLEAC=4;MLEAF=0.500;MQ=15.84;MQ0=0;MQRankSum=0.854;QD=0.26;ReadPosRankSum=-0.114;SB=-1.644e+01 GT:AD:DP:GQ:PL 0/1:35,3:38:45:45,0,66 0/1:67,4:71:15:15,0,177 0/1:43,2:45:16:19,0,16 0/0:29,1:30:0:0,0,231 +chrX 71458746 . T C 39.25 . AC=5;AF=0.625;AN=8;BaseQRankSum=-1.294;DP=14;Dels=0.00;FS=6.892;HaplotypeScore=2.7794;MLEAC=4;MLEAF=0.500;MQ=28.12;MQ0=0;MQRankSum=0.185;QD=3.93;ReadPosRankSum=1.109;SB=8.99 GT:AD:DP:GQ:PL 0/1:3,1:4:27:27,0,38 0/0:4,0:4:9:0,9,124 1/1:1,1:2:3:29,3,0 1/1:3,1:4:3:27,3,0 +chrX 71494271 . C G 89.45 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.193;DP=80;Dels=0.00;FS=43.183;HaplotypeScore=1.7022;MLEAC=3;MLEAF=0.375;MQ=37.30;MQ0=0;MQRankSum=-2.035;QD=1.16;ReadPosRankSum=0.386;SB=1.37 GT:AD:DP:GQ:PL 0/1:18,2:20:21:21,0,521 0/1:31,4:35:58:58,0,796 0/1:19,3:22:53:53,0,402 0/0:3,0:3:9:0,9,109 +chrX 73043817 rs1620574 T C 314.77 . AC=3;AF=0.500;AN=6;BaseQRankSum=1.318;DB;DP=39;Dels=0.00;FS=3.640;HaplotypeScore=2.1528;MLEAC=3;MLEAF=0.500;MQ=34.69;MQ0=0;MQRankSum=-1.277;QD=12.59;ReadPosRankSum=0.223;SB=-6.696e+01 GT:AD:DP:GQ:PL 0/0:12,0:12:30:0,30,380 0/1:11,6:17:99:189,0,264 1/1:2,6:8:15:170,15,0 ./. +chrX 73051087 . A T 67.37 . AC=4;AF=0.667;AN=6;BaseQRankSum=0.662;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.4103;MLEAC=4;MLEAF=0.667;MQ=26.08;MQ0=0;MQRankSum=-0.039;QD=2.50;ReadPosRankSum=1.051;SB=-5.240e-02 GT:AD:DP:GQ:PL 0/1:8,4:12:66:66,0,121 0/1:12,1:13:16:16,0,87 1/1:1,1:2:3:24,3,0 ./. +chrX 73507264 . A T 131.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.312;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.1325;MLEAC=3;MLEAF=0.375;MQ=33.10;MQ0=0;MQRankSum=-1.082;QD=1.37;ReadPosRankSum=0.825;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:24,1:25:17:0,17,601 0/1:37,5:43:55:55,0,1079 0/1:28,3:31:49:49,0,509 0/1:18,4:22:71:71,0,232 +chrX 73962255 . C T 85.25 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.442;DP=105;Dels=0.01;FS=39.219;HaplotypeScore=4.1549;MLEAC=3;MLEAF=0.375;MQ=33.35;MQ0=0;MQRankSum=-2.059;QD=1.38;ReadPosRankSum=-0.142;SB=-2.672e+00 GT:AD:DP:GQ:PL 0/1:20,2:24:1:1,0,508 0/0:40,3:43:20:0,20,998 0/1:18,4:22:29:29,0,520 0/1:10,4:15:95:95,0,292 +chrX 75250038 rs242456 T C 55.22 . AC=4;AF=1.00;AN=4;BaseQRankSum=2.041;DB;DP=21;Dels=0.05;FS=7.270;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=12.97;MQ0=0;MQRankSum=0.537;QD=3.25;ReadPosRankSum=0.322;SB=-1.182e-02 GT:AD:DP:GQ:PL ./. 1/1:3,7:10:3:29,3,0 ./. 1/1:3,3:6:6:60,6,0 +chrX 77275820 . C G 70.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.753;DP=153;Dels=0.01;FS=7.219;HaplotypeScore=10.7410;MLEAC=2;MLEAF=0.250;MQ=31.62;MQ0=0;MQRankSum=-0.880;QD=0.72;ReadPosRankSum=1.347;SB=-1.262e-02 GT:AD:DP:GQ:PL 0/0:32,0:33:54:0,54,642 0/1:49,5:54:70:70,0,599 0/1:39,3:42:42:42,0,481 0/0:22,0:22:18:0,18,242 +chrX 77372830 . A T 66.83 . AC=2;AF=0.250;AN=8;BaseQRankSum=-1.915;DP=90;Dels=0.01;FS=13.067;HaplotypeScore=11.9484;MLEAC=2;MLEAF=0.250;MQ=25.28;MQ0=0;MQRankSum=0.086;QD=1.36;ReadPosRankSum=1.668;SB=-4.447e-01 GT:AD:DP:GQ:PL 0/0:21,0:21:15:0,15,185 0/1:26,7:34:95:95,0,201 0/0:18,1:19:3:0,3,44 0/1:14,1:15:11:11,0,217 +chrX 78426488 rs3810711 T C 1908.02 . AC=8;AF=1.00;AN=8;BaseQRankSum=2.359;DB;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.1972;MLEAC=8;MLEAF=1.00;MQ=34.48;MQ0=0;MQRankSum=2.359;QD=34.69;ReadPosRankSum=1.260;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:33:435,33,0 1/1:0,25:25:75:963,75,0 1/1:0,10:10:30:376,30,0 1/1:3,5:8:15:173,15,0 +chrX 78580039 rs1736655 C T 2096.02 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.750;DB;DP=130;Dels=0.02;FS=0.000;HaplotypeScore=3.7429;MLEAC=8;MLEAF=1.00;MQ=26.04;MQ0=0;MQRankSum=2.062;QD=16.12;ReadPosRankSum=2.633;SB=-8.489e+02 GT:AD:DP:GQ:PL 1/1:3,27:30:27:336,27,0 1/1:11,46:57:55:1081,55,0 1/1:4,27:31:42:532,42,0 1/1:1,8:9:15:186,15,0 +chrX 78618050 rs1751134 A G 1706.57 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.990;DB;DP=62;Dels=0.00;FS=17.482;HaplotypeScore=1.8114;MLEAC=8;MLEAF=1.00;MQ=29.76;MQ0=0;MQRankSum=1.670;QD=27.53;ReadPosRankSum=-1.609;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:1,9:10:21:257,21,0 1/1:4,27:31:75:857,75,0 1/1:1,18:19:51:592,51,0 1/1:1,1:2:3:39,3,0 +chrX 79286031 . T A 42.30 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.321;DP=148;Dels=0.01;FS=14.427;HaplotypeScore=8.8990;MLEAC=1;MLEAF=0.125;MQ=28.84;MQ0=0;MQRankSum=-2.146;QD=1.84;ReadPosRankSum=-0.308;SB=-5.097e+00 GT:AD:DP:GQ:PL 0/0:28,1:30:24:0,24,566 0/0:53,4:58:6:0,6,887 0/0:32,0:35:39:0,39,451 0/1:17,4:23:78:78,0,161 +chrX 79527580 rs1887421 T A 1793.60 . AC=8;AF=1.00;AN=8;BaseQRankSum=3.342;DB;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6891;MLEAC=8;MLEAF=1.00;MQ=32.17;MQ0=0;MQRankSum=3.198;QD=28.93;ReadPosRankSum=2.530;SB=-8.751e+02 GT:AD:DP:GQ:PL 1/1:2,14:17:17:484,17,0 1/1:3,28:31:52:1014,52,0 1/1:3,8:11:24:292,24,0 1/1:2,1:3:3:42,3,0 +chrX 82764247 . G A 36.12 . AC=4;AF=0.500;AN=8;BaseQRankSum=-1.415;DP=28;Dels=0.04;FS=5.842;HaplotypeScore=6.3898;MLEAC=3;MLEAF=0.375;MQ=24.19;MQ0=0;MQRankSum=-0.283;QD=2.12;ReadPosRankSum=0.170;SB=0.977 GT:AD:DP:GQ:PL 0/1:3,1:4:16:25,0,16 0/0:10,1:11:15:0,15,175 0/1:6,1:7:23:23,0,74 1/1:4,1:5:3:32,3,0 +chrX 83411217 . A T 146.29 . AC=6;AF=0.750;AN=8;BaseQRankSum=0.238;DP=31;Dels=0.03;FS=12.882;HaplotypeScore=4.0997;MLEAC=5;MLEAF=0.625;MQ=26.78;MQ0=0;MQRankSum=1.347;QD=4.72;ReadPosRankSum=-1.664;SB=0.234 GT:AD:DP:GQ:PL 1/1:3,1:4:3:25,3,0 0/1:12,4:16:61:111,0,61 0/1:6,1:7:21:21,0,99 1/1:2,1:3:3:31,3,0 +chrX 84342544 . A T 411.64 . AC=5;AF=0.625;AN=8;BaseQRankSum=1.595;DP=75;Dels=0.00;FS=3.093;HaplotypeScore=9.1013;MLEAC=5;MLEAF=0.625;MQ=25.38;MQ0=0;MQRankSum=1.644;QD=5.49;ReadPosRankSum=0.012;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:9,4:13:42:80,0,42 0/1:25,4:29:75:75,0,168 0/1:16,4:20:94:94,0,103 1/1:5,8:13:21:208,21,0 +chrX 84362448 . T A 99.60 . AC=2;AF=0.250;AN=8;BaseQRankSum=-4.750;DP=130;Dels=0.00;FS=42.852;HaplotypeScore=3.9077;MLEAC=2;MLEAF=0.250;MQ=33.05;MQ0=0;MQRankSum=0.309;QD=1.29;ReadPosRankSum=0.038;SB=-1.969e+00 GT:AD:DP:GQ:PL 0/0:25,1:26:21:0,21,621 0/1:39,6:45:91:91,0,978 0/1:27,5:32:49:49,0,683 0/0:25,2:27:4:0,4,563 +chrX 84526109 . A C 65.71 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.918;DP=91;Dels=0.01;FS=35.047;HaplotypeScore=5.0885;MLEAC=3;MLEAF=0.375;MQ=29.29;MQ0=0;MQRankSum=-2.500;QD=0.91;ReadPosRankSum=1.960;SB=-2.763e+00 GT:AD:DP:GQ:PL 0/0:18,1:19:2:0,2,231 0/1:28,4:32:21:21,0,581 0/1:20,6:26:79:79,0,376 0/1:11,2:13:5:5,0,196 +chrX 85213901 . T C 46.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=-3.246;DP=134;Dels=0.00;FS=11.965;HaplotypeScore=1.7247;MLEAC=1;MLEAF=0.125;MQ=34.43;MQ0=0;MQRankSum=-1.777;QD=3.92;ReadPosRankSum=-0.107;SB=3.846e-03 GT:AD:DP:GQ:PL 0/0:33,0:34:84:0,84,1079 0/0:54,0:54:99:0,135,1638 0/0:33,1:34:52:0,52,891 0/1:8,4:12:83:83,0,167 +chrX 86054138 rs12841196 G C 154.20 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.412;DB;DP=67;Dels=0.00;FS=5.623;HaplotypeScore=0.5379;MLEAC=1;MLEAF=0.125;MQ=26.17;MQ0=0;MQRankSum=-2.248;QD=8.57;ReadPosRankSum=1.204;SB=-5.605e+01 GT:AD:DP:GQ:PL 0/1:4,14:18:8:190,0,8 0/0:22,0:22:36:0,36,424 0/0:20,0:20:48:0,48,575 0/0:7,0:7:9:0,9,109 +chrX 86877451 . A T 96.85 . AC=4;AF=0.500;AN=8;BaseQRankSum=1.841;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=28.6455;MLEAC=4;MLEAF=0.500;MQ=22.95;MQ0=0;MQRankSum=2.878;QD=1.42;ReadPosRankSum=-2.826;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:20,3:23:11:77,0,11 0/1:19,1:21:23:23,0,46 0/1:12,1:13:18:18,0,46 0/1:9,1:10:21:21,0,78 +chrX 93750466 rs2799916 T C 114.89 . AC=5;AF=0.833;AN=6;BaseQRankSum=-0.747;DB;DP=10;Dels=0.00;FS=3.802;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=21.62;MQ0=0;MQRankSum=0.747;QD=12.77;ReadPosRankSum=0.747;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,5:5:9:90,9,0 0/1:1,1:2:16:27,0,16 1/1:1,1:2:3:37,3,0 ./. +chrX 95990883 rs5949989 A G 908.28 . AC=3;AF=0.375;AN=8;BaseQRankSum=3.873;DB;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1606;MLEAC=3;MLEAF=0.375;MQ=34.57;MQ0=0;MQRankSum=-1.754;QD=17.47;ReadPosRankSum=1.023;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,17:20:17:499,17,0 0/1:16,16:32:99:458,0,470 0/0:27,0:27:78:0,78,998 0/0:8,0:8:24:0,24,285 +chrX 99662304 . G C 100.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-2.022;DP=106;Dels=0.01;FS=6.749;HaplotypeScore=11.2942;MLEAC=3;MLEAF=0.375;MQ=31.01;MQ0=0;MQRankSum=-0.674;QD=1.63;ReadPosRankSum=-0.064;SB=-3.691e+01 GT:AD:DP:GQ:PL 0/1:19,2:21:40:40,0,133 0/0:42,0:43:51:0,51,601 0/1:19,4:23:68:77,0,68 0/1:16,1:18:27:27,0,113 +chrX 100093162 . G T 77.80 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.954;DP=88;Dels=0.02;FS=0.000;HaplotypeScore=1.8583;MLEAC=4;MLEAF=0.500;MQ=23.14;MQ0=0;MQRankSum=0.506;QD=1.30;ReadPosRankSum=-0.248;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:15,1:16:9:9,0,146 0/1:26,6:32:75:75,0,276 0/0:27,1:28:0:0,0,164 0/1:8,2:10:33:33,0,51 +chrX 100212525 rs6616208 T C 33.26 . AC=4;AF=0.667;AN=6;BaseQRankSum=2.513;DB;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.4825;MLEAC=4;MLEAF=0.667;MQ=10.96;MQ0=0;MQRankSum=-0.724;QD=0.95;ReadPosRankSum=0.383;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:1,13:14:3:0,3,33 1/1:1,21:22:3:32,3,0 ./. 1/1:1,11:13:3:39,3,0 +chrX 100514986 rs5967281 G A 793.99 . AC=1;AF=0.125;AN=8;BaseQRankSum=1.646;DB;DP=200;Dels=0.00;FS=1.737;HaplotypeScore=0.9772;MLEAC=1;MLEAF=0.125;MQ=36.05;MQ0=0;MQRankSum=-2.733;QD=11.68;ReadPosRankSum=1.182;SB=-2.160e+02 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,132,1696 0/1:40,28:68:99:830,0,1146 0/0:57,0:57:99:0,163,2156 0/0:31,0:31:81:0,81,1016 +chrX 100547933 rs5951328 A G 7600.01 . AC=8;AF=1.00;AN=8;BaseQRankSum=4.366;DB;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=1.9784;MLEAC=8;MLEAF=1.00;MQ=35.39;MQ0=0;MQRankSum=-0.740;QD=34.55;ReadPosRankSum=3.472;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1777,138,0 1/1:8,67:75:99:2412,139,0 1/1:3,41:45:91:1564,91,0 1/1:2,50:52:91:1847,91,0 +chrX 100611928 . T C 127.74 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.723;DP=177;Dels=0.02;FS=25.795;HaplotypeScore=15.4333;MLEAC=2;MLEAF=0.250;MQ=31.95;MQ0=0;MQRankSum=-2.154;QD=1.32;ReadPosRankSum=-0.371;SB=2.19 GT:AD:DP:GQ:PL 0/1:25,7:32:91:91,0,563 0/1:57,6:64:78:78,0,1112 0/0:44,2:46:24:0,24,746 0/0:29,1:31:12:0,12,403 +chrX 101823435 . C T 34.89 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.728;DP=43;Dels=0.00;FS=15.293;HaplotypeScore=1.4178;MLEAC=2;MLEAF=0.250;MQ=26.53;MQ0=0;MQRankSum=-0.277;QD=2.49;ReadPosRankSum=0.415;SB=3.55 GT:AD:DP:GQ:PL 0/0:14,0:14:21:0,21,263 0/0:15,0:15:27:0,27,341 1/1:4,1:5:3:31,3,0 0/1:7,2:9:14:47,0,14 +chrX 102564670 . T G 49.73 . AC=3;AF=0.375;AN=8;BaseQRankSum=-3.097;DP=242;Dels=0.00;FS=10.702;HaplotypeScore=0.4332;MLEAC=3;MLEAF=0.375;MQ=21.06;MQ0=0;MQRankSum=3.356;QD=0.31;ReadPosRankSum=-2.230;SB=-6.608e-01 GT:AD:DP:GQ:PL 0/1:52,1:53:12:12,0,220 0/0:80,0:80:27:0,27,305 0/1:59,2:61:11:11,0,421 0/1:45,3:48:69:69,0,308 +chrX 103220042 . G C 122.91 . AC=3;AF=0.375;AN=8;BaseQRankSum=-1.320;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=2.9940;MLEAC=3;MLEAF=0.375;MQ=31.04;MQ0=0;MQRankSum=-1.828;QD=1.54;ReadPosRankSum=1.942;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:24,5:29:83:83,0,292 0/1:38,6:45:59:59,0,769 0/0:24,1:25:19:0,19,542 0/1:4,1:5:17:24,0,17 +chrX 103294546 . G A 52 . AC=1;AF=0.125;AN=8;BaseQRankSum=-4.332;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.5804;MLEAC=1;MLEAF=0.125;MQ=34.00;MQ0=0;MQRankSum=-1.343;QD=1.24;ReadPosRankSum=1.824;SB=2.865e-03 GT:AD:DP:GQ:PL 0/0:51,3:54:24:0,24,1235 0/0:54,1:55:87:0,87,1441 0/0:47,1:48:70:0,70,1177 0/1:34,8:42:88:88,0,928 +chrX 103359877 . A C 286.32 . AC=4;AF=0.500;AN=8;BaseQRankSum=-3.272;DP=83;Dels=0.01;FS=59.837;HaplotypeScore=2.1600;MLEAC=4;MLEAF=0.500;MQ=24.83;MQ0=0;MQRankSum=1.855;QD=3.45;ReadPosRankSum=1.006;SB=-2.646e+00 GT:AD:DP:GQ:PL 0/1:14,2:16:39:39,0,174 0/1:29,9:38:99:191,0,240 0/1:10,4:14:10:90,0,10 0/1:12,2:14:8:8,0,103 +chrX 106462267 rs1954365 C T 102.20 . AC=2;AF=0.250;AN=8;BaseQRankSum=0.000;DB;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.2496;MLEAC=2;MLEAF=0.250;MQ=29.16;MQ0=0;MQRankSum=1.036;QD=25.55;ReadPosRankSum=2.072;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:0,4:4:12:145,12,0 0/0:5,0:5:9:0,9,113 0/0:2,0:2:6:0,6,65 0/0:1,0:1:3:0,3,33 +chrX 106884382 . T A 79.38 . AC=2;AF=0.250;AN=8;BaseQRankSum=-3.630;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=3.4660;MLEAC=2;MLEAF=0.250;MQ=33.14;MQ0=0;MQRankSum=-2.015;QD=2.48;ReadPosRankSum=2.815;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:19,4:23:80:80,0,465 0/0:37,1:39:52:0,52,848 0/0:30,2:32:5:0,5,696 0/1:6,3:9:40:40,0,156 +chrX 107415825 rs2881142 T C 2614.14 . AC=8;AF=1.00;AN=8;BaseQRankSum=0.623;DB;DP=103;Dels=0.01;FS=10.925;HaplotypeScore=4.5117;MLEAC=8;MLEAF=1.00;MQ=28.00;MQ0=0;MQRankSum=0.148;QD=25.38;ReadPosRankSum=3.807;SB=-1.182e-02 GT:AD:DP:GQ:PL 1/1:3,22:25:32:662,32,0 1/1:3,26:29:9:751,9,0 1/1:1,29:30:48:883,48,0 1/1:4,14:18:33:357,33,0 +chrX 107417708 . A G 139.62 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.588;DP=68;Dels=0.00;FS=77.320;HaplotypeScore=4.8652;MLEAC=4;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=-2.370;QD=2.05;ReadPosRankSum=2.470;SB=-2.877e+00 GT:AD:DP:GQ:PL 0/1:17,2:19:23:23,0,223 0/1:15,7:22:79:79,0,354 0/1:9,3:12:57:57,0,94 0/1:12,3:15:23:23,0,238 +chrX 107863606 . C T 330.58 . AC=4;AF=0.500;AN=8;BaseQRankSum=-2.248;DP=126;Dels=0.00;FS=58.364;HaplotypeScore=11.8106;MLEAC=4;MLEAF=0.500;MQ=22.83;MQ0=0;MQRankSum=0.092;QD=2.62;ReadPosRankSum=2.473;SB=-1.202e-02 GT:AD:DP:GQ:PL 0/1:23,5:28:99:108,0,264 0/1:38,10:48:99:123,0,470 0/1:24,4:28:42:42,0,186 0/1:13,8:22:61:100,0,61 +chrX 108619081 . G A 44.03 . AC=1;AF=0.125;AN=8;BaseQRankSum=-0.619;DP=102;Dels=0.02;FS=0.000;HaplotypeScore=3.5293;MLEAC=1;MLEAF=0.125;MQ=30.20;MQ0=0;MQRankSum=-0.274;QD=1.83;ReadPosRankSum=0.213;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/0:18,2:20:1:0,1,269 0/0:34,2:36:12:0,12,487 0/1:21,3:24:79:79,0,166 0/0:18,1:20:15:0,15,203 +chrX 109468229 . C A 59.49 . AC=3;AF=0.375;AN=8;BaseQRankSum=2.055;DP=104;Dels=0.01;FS=4.803;HaplotypeScore=15.6467;MLEAC=3;MLEAF=0.375;MQ=19.81;MQ0=0;MQRankSum=-0.118;QD=0.63;ReadPosRankSum=3.177;SB=-1.182e-02 GT:AD:DP:GQ:PL 0/1:23,1:25:10:10,0,90 0/1:37,7:44:61:61,0,255 0/1:20,3:24:30:30,0,103 0/0:9,0:10:6:0,6,50
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/convertvcf4toannovar/test-data/convertvcf4toannovar_test1_output.xls Thu Oct 04 17:44:54 2012 -0400 @@ -0,0 +1,9998 @@ +chr1 882006 882006 C T het 121.68 34 22.77 3.58 +chr1 887958 887958 C A het 100.42 84 20.70 1.59 +chr1 906029 906029 T G unknown 172.78 95 28.10 2.30 +chr1 907456 907456 G C unknown 32.63 52 20.05 0.86 +chr1 1147443 1147443 G A het 42.09 33 22.99 1.62 +chr1 1249829 1249829 C T unknown 70.01 11 26.09 10.00 +chr1 1254841 1254841 C G hom 1531.99 68 29.99 22.53 +chr1 1262552 1262552 G C het 101.91 38 18.29 2.91 +chr1 1263144 1263144 G A het 499.63 38 30.15 13.15 +chr1 1268135 1268135 T G unknown 38.30 21 27.48 2.39 +chr1 1289197 1289197 G T unknown 47.44 39 26.50 1.53 +chr1 1500052 1500052 T A het 286.79 225 30.03 1.65 +chr1 1653021 1653021 G C hom 53.53 103 12.08 1.16 +chr1 1887245 1887245 G A het 601.58 76 32.43 7.92 +chr1 2106612 2106612 G T het 68.11 59 27.84 1.62 +chr1 2317410 2317410 C T unknown 62 75 29.98 1.13 +chr1 2436124 2436124 C A unknown 68.55 108 28.25 1.12 +chr1 2444470 2444470 C T het 1134.79 141 34.45 10.81 +chr1 2451747 2451747 C T het 39.99 58 26.71 0.69 +chr1 2519930 2519930 T G het 48.37 155 24.73 0.68 +chr1 2525237 2525237 A C het 112.32 33 24.20 3.40 +chr1 2526859 2526859 G T unknown 47.58 81 26.99 1.06 +chr1 2983963 2983963 G A hom 114.24 8 29.26 14.28 +chr1 2985690 2985690 G C het 101.59 48 24.77 2.82 +chr1 3342704 3342704 G C het 278.58 97 26.84 2.87 +chr1 3385015 3385015 G A unknown 38.77 3 29.49 19.38 +chr1 3407616 3407616 G A unknown 49.02 12 24.35 9.80 +chr1 3555428 3555428 G T unknown 661.79 96 29.04 9.07 +chr1 3746583 3746583 G T unknown 886.56 79 30.78 15.29 +chr1 3750729 3750729 A G unknown 111.46 18 30.31 12.38 +chr1 3797919 3797919 T C hom 35.01 2 29.61 17.51 +chr1 5910277 5910277 G C unknown 43.01 10 17.18 8.60 +chr1 6133685 6133685 G T het 44.19 51 24.64 1.23 +chr1 6151483 6151483 T G het 152.88 41 16.69 3.82 +chr1 6202132 6202132 C A unknown 30.59 142 31.95 0.46 +chr1 6228180 6228180 A C unknown 139.99 151 31.15 4.37 +chr1 6314479 6314479 C T hom 732.57 52 31.24 14.09 +chr1 6504578 6504578 C T het 31.35 102 27.79 0.41 +chr1 6527833 6527833 C A hom 73.31 20 24.14 3.67 +chr1 6533016 6533016 G A het 182.68 52 27.94 3.51 +chr1 6585898 6585898 A T unknown 41.01 145 34.68 2.28 +chr1 6636603 6636603 C G het 423.59 212 35.26 2.00 +chr1 6649164 6649164 C T het 87.87 73 24.70 1.20 +chr1 6705874 6705874 G C het 4390.01 232 33.78 18.92 +chr1 7527996 7527996 T C hom 1643.57 149 34.50 11.03 +chr1 7725191 7725191 G C het 127.83 60 27.43 2.13 +chr1 7861214 7861214 C A unknown 61.60 146 27.34 0.66 +chr1 7880469 7880469 A G het 423.52 39 33.08 12.10 +chr1 7887493 7887493 T C hom 1866.56 103 26.16 18.12 +chr1 7889804 7889804 C G het 241.72 54 15.55 4.48 +chr1 8385955 8385955 A C het 314.58 119 31.98 2.64 +chr1 8397803 8397803 C T het 84.99 91 33.81 3.86 +chr1 8415290 8415290 C A unknown 196 33 32.49 7.26 +chr1 8555042 8555042 C T het 1261.79 177 35.59 9.42 +chr1 8923231 8923231 C T het 83.58 58 20.99 1.94 +chr1 9011586 9011586 T G het 4406.01 194 34.04 22.71 +chr1 9211611 9211611 G A het 61.56 84 27.05 1.76 +chr1 9323457 9323457 G C het 99.23 45 21.25 9.92 +chr1 9714271 9714271 A G het 86.06 134 26.39 0.64 +chr1 9816521 9816521 G A unknown 36.22 90 25.58 0.45 +chr1 10093618 10093618 A T het 142.86 75 32.31 1.90 +chr1 10382024 10382024 T A het 53.07 38 24.17 1.90 +chr1 10386506 10386506 T C unknown 554.79 104 37.01 6.93 +chr1 10421868 10421868 C G het 158.58 144 34.37 1.10 +chr1 10479630 10479630 C G het 129.59 99 25.39 1.31 +chr1 10521794 10521794 C G het 89.64 83 24.93 1.08 +chr1 10703203 10703203 - C unknown 390.75 65 25.45 7.97 +chr1 10707903 10707903 T G unknown 58.61 86 31.40 1.47 +chr1 10720445 10720445 G T unknown 57.03 47 30.10 1.50 +chr1 10725498 10725498 G A unknown 158.24 41 25.75 5.10 +chr1 11008006 11008006 T C unknown 60.86 52 30.53 1.56 +chr1 11022020 11022020 C T unknown 37.01 5 20.24 12.34 +chr1 11116015 11116015 G C unknown 30.30 27 19.34 2.33 +chr1 11128629 11128629 G T het 57.58 89 26.18 0.65 +chr1 11217157 11217157 A T unknown 73.96 105 17.48 0.82 +chr1 11288633 11288633 G C het 317.59 68 35.23 4.67 +chr1 11291276 11291276 A T het 586.69 262 33.85 2.24 +chr1 11294256 11294256 G T unknown 32.71 151 29.15 0.48 +chr1 11333789 11333789 G C het 34.68 79 25.36 0.83 +chr1 11346114 11346114 C T het 311.59 265 29.40 1.18 +chr1 11575375 11575375 T A hom 338.03 30 24.37 11.27 +chr1 11595293 11595293 A G het 40.31 17 17.69 3.10 +chr1 11718864 11718864 C A het 91.56 83 29.65 1.95 +chr1 11735843 11735843 G T het 64.48 61 21.07 1.34 +chr1 11779762 11779762 C T het 235.83 41 31.87 7.86 +chr1 11851170 11851170 C A het 30.20 70 24.06 2.32 +chr1 12172029 12172029 G C het 46.57 57 32.55 1.11 +chr1 12248774 12248774 A G het 63.43 71 24.49 1.24 +chr1 12403143 12403143 G C het 242.61 52 22.49 4.67 +chr1 12461698 12461698 T C het 71.56 100 24.99 0.72 +chr1 12640570 12640570 G A het 74.81 90 24.16 0.83 +chr1 12785249 12785250 CA - het 612.54 79 22.08 7.75 +chr1 12887739 12887739 C T hom 133.64 129 9.15 1.04 +chr1 12921316 12921316 C T hom 74.29 179 7.88 0.52 +chr1 13142746 13142746 C T het 161.43 94 21.62 1.72 +chr1 13171847 13171847 A G unknown 176.46 133 13.39 1.82 +chr1 13172503 13172503 C T hom 392.17 118 12.76 3.32 +chr1 13942427 13942427 T G unknown 48.01 184 34.99 0.92 +chr1 14105139 14105139 T A het 260.75 88 21.13 2.96 +chr1 14142935 14142935 T G het 299.84 203 36.02 1.97 +chr1 15382739 15382739 C G het 429.58 102 28.48 4.21 +chr1 15386888 15386888 T C het 140.55 104 33.97 2.81 +chr1 15767089 15767089 G T het 215.58 90 33.37 2.40 +chr1 15769139 15769139 G A hom 1353.57 70 30.69 19.34 +chr1 15809927 15809927 G A unknown 40.26 32 15.32 1.75 +chr1 15831193 15831193 C A unknown 99.68 139 34.57 0.91 +chr1 15833323 15833323 G C unknown 30 66 26.04 0.59 +chr1 15873386 15873386 A G hom 1228.57 79 34.61 15.55 +chr1 15983211 15983211 T A het 113.01 199 39.76 0.74 +chr1 16054370 16054370 G C hom 39.94 25 25.81 3.63 +chr1 16065888 16065888 A C hom 147.24 57 23.51 3.78 +chr1 16069503 16069503 C T het 33.13 106 32.69 0.72 +chr1 16330816 16330816 C T het 47.99 50 33.29 5.33 +chr1 16332503 16332503 G C unknown 33.07 222 30.52 0.65 +chr1 16459745 16459745 G A het 373.99 133 34.51 12.06 +chr1 16461746 16461746 C A unknown 87.41 57 25.57 1.99 +chr1 16531245 16531245 C T het 34.36 53 23.77 0.82 +chr1 16847832 16847832 T C hom 40.01 7 20.11 13.34 +chr1 16891003 16891003 C A het 1578.58 171 23.39 9.23 +chr1 16891333 16891333 C T unknown 165.99 580 16.06 0.91 +chr1 16893140 16893140 A C het 563.62 237 22.04 2.38 +chr1 16903026 16903026 C A unknown 67.98 104 15.30 0.85 +chr1 16973057 16973057 G A het 63.66 209 9.31 0.72 +chr1 17038811 17038811 C G hom 37.01 5 20.37 9.25 +chr1 17183281 17183281 T G het 42.08 18 19.00 3.83 +chr1 17249221 17249221 G T het 87.29 123 25.47 0.94 +chr1 17292123 17292123 T A het 255.61 97 26.14 2.64 +chr1 17297289 17297289 C T hom 216.43 37 28.08 5.85 +chr1 17322519 17322519 T C het 250.92 121 27.40 2.73 +chr1 17405916 17405916 C T unknown 591.99 127 38.92 19.10 +chr1 17409241 17409241 G A hom 1180.57 47 32.10 25.12 +chr1 17521235 17521235 C G unknown 44.26 27 17.67 2.33 +chr1 17609505 17609505 G T het 220.93 109 28.63 2.03 +chr1 17662662 17662662 T C hom 552.40 87 37.03 9.69 +chr1 17718672 17718672 G - hom 267.15 21 32.46 19.08 +chr1 17720382 17720382 A T het 616.58 101 27.82 6.10 +chr1 17914953 17914953 C T het 144.12 98 25.06 1.85 +chr1 18809192 18809192 T A het 37.35 47 33.57 0.98 +chr1 18809586 18809586 A C unknown 70.86 50 25.57 2.62 +chr1 19184077 19184077 A G het 1434.58 133 38.16 10.79 +chr1 19200895 19200895 C T het 1200.79 187 38.14 8.40 +chr1 19200908 19200908 G C unknown 3118.56 191 37.05 21.66 +chr1 19407829 19407829 A G het 52.58 84 18.78 0.81 +chr1 19433244 19433244 G C het 51.58 216 32.29 0.49 +chr1 19440107 19440107 A G hom 1590.76 99 28.48 16.07 +chr1 19446734 19446734 A C het 187.80 270 40.48 0.70 +chr1 19448608 19448608 C G hom 1375.55 51 30.63 26.97 +chr1 19484256 19484256 A T unknown 42.99 91 36.41 2.69 +chr1 19494600 19494600 A C het 30.60 171 32.93 0.41 +chr1 19504306 19504306 C G het 636.79 73 38.77 11.79 +chr1 19595126 19595126 G C het 32.87 82 19.39 0.84 +chr1 19611410 19611410 C G het 762.72 82 20.33 9.30 +chr1 20007420 20007420 T C unknown 49.01 5 24.46 16.34 +chr1 20020993 20020993 A G unknown 1070.75 83 31.20 17.00 +chr1 20517966 20517966 T G het 280.80 83 31.34 4.39 +chr1 20674727 20674727 C A unknown 42.99 161 38.17 1.05 +chr1 20944954 20944954 A C unknown 89.73 72 35.88 1.76 +chr1 21011614 21011614 T G unknown 56.56 118 34.33 1.11 +chr1 21053545 21053545 G A unknown 297.81 128 31.46 2.95 +chr1 21174429 21174429 T C het 470.99 110 41.43 12.08 +chr1 21180250 21180250 G A unknown 57.62 33 36.23 7.20 +chr1 21191001 21191001 T C het 801.58 241 28.12 3.33 +chr1 21751068 21751068 C G unknown 49.78 23 20.65 2.77 +chr1 21751283 21751283 T G het 102.14 187 15.40 0.55 +chr1 21752387 21752387 T C het 115.87 166 10.21 0.70 +chr1 21753487 21753487 T G het 204.58 132 17.42 1.55 +chr1 21753507 21753508 AA - het 1766.54 156 18.27 11.32 +chr1 21792297 21792297 T G hom 118.33 54 14.02 2.19 +chr1 21806943 21806943 C G het 39.05 18 15.33 4.34 +chr1 21807609 21807609 A G unknown 268.96 98 18.17 3.49 +chr1 21808303 21808303 T C het 911.86 177 14.51 5.15 +chr1 21808647 21808647 G A het 586.58 158 14.42 3.71 +chr1 21935357 21935357 A C het 108.72 161 35.33 0.89 +chr1 21945532 21945532 G C unknown 32.38 12 27.65 3.60 +chr1 22050649 22050649 C A unknown 878.81 64 34.70 22.53 +chr1 22079189 22079189 C T het 52.53 67 27.82 0.82 +chr1 22150257 22150257 C T hom 619.18 74 24.15 11.68 +chr1 22157689 22157689 G A hom 274.41 25 22.31 10.98 +chr1 22199821 22199821 G A hom 5298.01 164 35.89 32.30 +chr1 22204739 22204739 C G het 53.69 54 30.43 1.99 +chr1 22214279 22214279 C A unknown 719.79 79 31.59 12.41 +chr1 22838340 22838340 C A het 36.40 156 29.32 0.31 +chr1 22902772 22902772 C T unknown 2109.79 218 36.70 13.27 +chr1 23219344 23219344 A G het 200.99 193 34.40 5.74 +chr1 23221886 23221886 G A het 65.22 75 27.63 1.19 +chr1 23232400 23232400 C T unknown 373.81 59 29.89 8.13 +chr1 23236826 23236826 C T het 359.58 58 25.61 6.20 +chr1 23408938 23408938 T A hom 79.67 21 17.62 4.98 +chr1 23420708 23420708 A C het 234.82 190 34.83 1.24 +chr1 24083465 24083465 A G unknown 50.01 376 37.50 0.27 +chr1 24137112 24137112 G C het 82.24 29 24.96 3.74 +chr1 24228359 24228359 A G hom 43.01 82 10.32 0.93 +chr1 24229237 24229237 C A unknown 40.07 15 14.57 4.45 +chr1 24408431 24408431 T A het 36.41 41 17.70 1.14 +chr1 24421474 24421474 G A hom 1217.88 43 36.91 28.32 +chr1 24424241 24424241 T C hom 126.35 18 17.45 8.42 +chr1 24432365 24432365 T G het 55.36 84 34.52 1.23 +chr1 24469534 24469534 C T het 45.15 37 34.80 1.61 +chr1 25611035 25611035 G C hom 66.25 47 8.77 1.84 +chr1 26153107 26153107 A C het 547.80 230 37.29 3.09 +chr1 26361663 26361663 G C hom 154.64 52 21.76 2.97 +chr1 26383822 26383822 C G het 42.92 68 18.49 0.63 +chr1 26448849 26448849 T C unknown 774.79 115 28.06 9.01 +chr1 26514700 26514700 T C het 33.44 56 27.56 0.60 +chr1 26527953 26527953 C T het 68.55 140 31.88 1.12 +chr1 26528024 26528024 C A het 63.57 144 33.98 0.63 +chr1 26589698 26589698 T A unknown 129.07 66 29.95 5.61 +chr1 26595131 26595131 C T het 78.13 76 29.14 1.32 +chr1 26620573 26620573 T C hom 489.89 43 22.13 11.39 +chr1 26646726 26646726 A G hom 2344.54 109 29.18 21.51 +chr1 26648551 26648551 G C het 302.86 78 22.70 3.88 +chr1 26793726 26793726 G T het 87.92 100 36.29 1.20 +chr1 26881566 26881566 G - unknown 249.96 33 27.21 12.50 +chr1 26887140 26887140 C T unknown 181.87 72 25.74 3.08 +chr1 26900708 26900708 G A unknown 155.03 59 30.53 11.93 +chr1 27087542 27087542 G C het 118.78 165 31.17 0.72 +chr1 27106106 27106106 G A het 1233.79 253 35.45 6.46 +chr1 27106589 27106589 T A het 58.55 172 32.05 0.70 +chr1 27107113 27107113 G A unknown 40.13 67 19.10 0.80 +chr1 27124230 27124230 T C unknown 62.07 131 33.43 2.14 +chr1 27180364 27180364 C G het 48.47 112 27.85 0.57 +chr1 27224015 27224015 T A het 152.83 150 33.17 1.02 +chr1 27238270 27238270 G A het 365.11 58 22.64 6.29 +chr1 27276452 27276452 G A het 33.80 21 30.87 1.99 +chr1 27332935 27332935 G A unknown 86.78 56 29.47 3.21 +chr1 27428197 27428197 A G het 63.68 39 26.13 1.63 +chr1 27436141 27436141 A C unknown 32.59 217 34.72 0.30 +chr1 27660340 27660340 T C het 96.42 17 30.29 5.67 +chr1 27679885 27679885 T G het 95.02 30 31.13 4.13 +chr1 27687747 27687747 G C unknown 42.41 57 31.59 1.77 +chr1 27721017 27721017 T A het 81.66 93 22.83 0.88 +chr1 27741512 27741512 T A het 32.52 67 30.98 0.49 +chr1 27876150 27876150 G A unknown 35.59 123 30.57 1.87 +chr1 28087048 28087048 A C het 44.72 89 33.01 0.69 +chr1 28146223 28146223 C G het 46.55 111 38.20 0.90 +chr1 28202978 28202978 T G het 223.01 70 27.94 3.19 +chr1 28206522 28206522 C G unknown 99.23 56 31.65 3.68 +chr1 28818187 28818187 A G het 332.85 214 39.22 2.12 +chr1 28861536 28861536 A T unknown 86.57 72 23.60 2.11 +chr1 29345027 29345027 T G hom 1289.14 64 30.03 20.14 +chr1 29641865 29641865 G A het 80.99 86 34.36 4.05 +chr1 29647333 29647333 C T het 385.60 87 25.03 4.43 +chr1 31188721 31188721 C T unknown 32.58 57 29.26 1.16 +chr1 31437452 31437452 G C het 125.70 144 32.44 0.87 +chr1 31440187 31440187 A G unknown 56.85 106 34.73 1.11 +chr1 31736424 31736424 A G unknown 64.01 68 23.07 1.33 +chr1 31761989 31761989 G A hom 797.05 29 27.65 27.48 +chr1 31769631 31769632 AC - unknown 47.98 32 19.89 3.00 +chr1 32090672 32090672 T C het 338.58 73 27.71 4.64 +chr1 32158341 32158341 G T het 43.43 99 32.43 0.54 +chr1 32158659 32158659 A C unknown 55.47 35 25.57 3.08 +chr1 32279941 32279941 C A het 89.94 27 26.46 4.50 +chr1 32280430 32280430 C G het 810.58 214 30.79 3.79 +chr1 32687559 32687559 T G het 55.59 76 22.69 1.43 +chr1 32841945 32841945 C T het 132.90 178 30.00 0.75 +chr1 33060835 33060835 T - het 479.75 127 30.34 5.33 +chr1 33138516 33138516 A C hom 2186.17 89 30.48 24.56 +chr1 33376657 33376657 T G het 238.85 197 38.34 3.18 +chr1 33560208 33560208 C T unknown 37.62 177 33.14 0.28 +chr1 33562518 33562518 G C unknown 201.79 83 32.54 3.15 +chr1 34066632 34066632 C A unknown 86.55 142 37.48 1.17 +chr1 34166365 34166365 T G het 417.22 92 28.82 4.53 +chr1 34667863 34667863 C A het 168.99 132 33.30 6.04 +chr1 35259150 35259150 A G hom 36.25 5 26.43 12.08 +chr1 36030897 36030897 T C het 90.18 125 31.13 0.96 +chr1 36479202 36479202 G A unknown 40.99 165 36.00 2.16 +chr1 36520708 36520708 T A unknown 76.90 56 29.48 2.02 +chr1 36552700 36552700 C G het 75.95 99 31.20 1.01 +chr1 36785189 36785189 C A het 63.33 29 25.01 2.53 +chr1 36859655 36859655 C T het 297.79 149 32.12 2.66 +chr1 36887702 36887702 C T het 4105.01 161 33.61 25.50 +chr1 36888462 36888462 A G unknown 806.79 127 34.33 9.84 +chr1 36939135 36939135 G A het 46.62 155 34.26 0.39 +chr1 37285306 37285306 G T unknown 47.03 35 25.01 1.74 +chr1 37584681 37584681 G A hom 44.01 10 16.32 7.33 +chr1 37959308 37959308 A T het 82.97 51 18.73 1.69 +chr1 38033346 38033346 C T het 45.57 133 32.24 0.48 +chr1 38082197 38082197 C T het 235.58 72 24.91 3.27 +chr1 38185098 38185098 G C het 178.60 67 27.88 2.67 +chr1 38226942 38226942 C T het 299.10 101 26.35 2.96 +chr1 38272660 38272660 G A het 1592.58 162 37.45 9.83 +chr1 38306712 38306712 G A het 32.26 39 16.19 1.24 +chr1 38484959 38484959 A C unknown 84.99 231 37.41 2.36 +chr1 39175198 39175198 A G het 110.36 87 16.48 1.67 +chr1 39352083 39352083 T G hom 1190.57 50 33.93 23.81 +chr1 39758993 39758993 C G hom 1952.56 82 36.74 23.81 +chr1 39827379 39827379 T A unknown 114.57 133 35.44 1.66 +chr1 40313018 40313018 C G het 712.79 96 35.16 10.48 +chr1 40661327 40661327 A T unknown 32.45 92 31.08 1.05 +chr1 40735837 40735837 T G het 30.19 67 20.42 0.52 +chr1 40776775 40776775 T C het 47.44 108 31.63 0.65 +chr1 40981460 40981460 T G hom 81 10 22.00 10.13 +chr1 41098785 41098785 G T het 32.15 205 33.21 0.35 +chr1 41107558 41107558 A G het 93.13 82 28.16 1.41 +chr1 41236488 41236488 G T het 63.87 101 23.65 0.89 +chr1 41284252 41284252 T C unknown 54.02 25 16.29 4.16 +chr1 41298752 41298752 T C unknown 50.99 121 36.98 1.76 +chr1 41404596 41404596 T C hom 252.36 16 34.88 25.24 +chr1 41475784 41475784 A C het 326.58 105 32.20 3.11 +chr1 41627206 41627206 C T het 155.29 62 33.35 6.75 +chr1 42045302 42045302 G A hom 1244.04 47 33.14 26.47 +chr1 42049140 42049140 C G hom 1191 50 28.12 23.82 +chr1 42049728 42049728 T G het 214.58 130 37.05 1.65 +chr1 42506578 42506578 C T het 52.28 20 28.14 3.49 +chr1 42657157 42657157 A T het 100.55 143 35.18 1.57 +chr1 42896569 42896569 G C het 88.52 43 29.14 2.68 +chr1 43111741 43111741 G A het 157.99 111 38.78 7.18 +chr1 43132217 43132217 G A het 175.95 97 26.53 2.07 +chr1 43689772 43689772 A G het 674.58 170 35.78 3.97 +chr1 43779024 43779024 T G het 92.82 141 31.63 0.95 +chr1 43829534 43829534 C A het 667.58 80 29.47 8.34 +chr1 43852031 43852031 A G het 182.58 61 27.71 2.99 +chr1 43907311 43907311 C T het 43.10 193 31.51 0.46 +chr1 43916984 43916984 T A unknown 83.72 219 31.82 0.83 +chr1 44086831 44086831 C T unknown 419.87 51 27.05 11.05 +chr1 44386445 44386445 G A het 709.79 116 35.37 8.55 +chr1 44426948 44426948 G A het 4525.01 172 31.32 26.31 +chr1 44461581 44461581 A T unknown 139.55 192 30.85 1.57 +chr1 44461732 44461732 A C het 281.67 69 27.90 4.08 +chr1 44685128 44685128 T C unknown 59.58 77 28.88 1.42 +chr1 44685217 44685217 C T het 36.17 41 28.55 0.88 +chr1 44685494 44685494 C T het 233.38 225 27.27 1.04 +chr1 45120789 45120789 C T het 54.56 117 29.84 0.91 +chr1 45163967 45163967 C G unknown 39.01 134 23.67 0.35 +chr1 45213425 45213425 T C hom 71.29 16 23.37 5.94 +chr1 45227667 45227667 T G het 456.58 89 28.26 5.13 +chr1 45228043 45228043 G T het 317.83 105 25.25 3.88 +chr1 45241777 45241777 A C hom 103.74 43 14.14 2.96 +chr1 45250534 45250534 G A het 55.39 119 25.41 0.60 +chr1 45250925 45250925 T C unknown 43.68 105 25.64 0.73 +chr1 45297529 45297529 T G het 493.58 81 25.23 6.09 +chr1 45795174 45795174 T C het 68.95 153 23.17 0.57 +chr1 45887288 45887288 T C unknown 1571.56 94 38.32 23.11 +chr1 45960742 45960742 T C het 95.66 92 19.61 1.04 +chr1 45962379 45962379 A G het 41.46 24 20.93 1.97 +chr1 45962409 45962409 T C unknown 40.03 10 17.05 8.01 +chr1 45980714 45980714 A C het 134.66 224 28.64 0.81 +chr1 45996653 45996653 T G hom 167.80 43 28.76 3.90 +chr1 46086449 46086449 C G het 114.27 174 38.22 0.87 +chr1 46247500 46247500 T C het 94.26 55 17.50 2.14 +chr1 46425195 46425195 A G unknown 186.27 82 32.81 12.42 +chr1 46663450 46663450 G T het 197.79 140 33.46 1.94 +chr1 46685629 46685629 C A het 362.58 83 30.40 4.37 +chr1 46715921 46715921 G T het 190.83 62 31.94 3.08 +chr1 46751019 46751019 C G het 123.74 69 28.46 2.47 +chr1 46810784 46810784 C A unknown 32.09 137 29.14 1.00 +chr1 46874708 46874708 G T unknown 86.15 53 29.63 3.59 +chr1 47013364 47013364 T C hom 141.54 11 25.00 12.87 +chr1 47037689 47037689 A G hom 49.10 47 21.82 1.29 +chr1 47123725 47123725 G C het 215.80 31 17.29 6.96 +chr1 47264844 47264844 C T het 37.46 62 32.04 0.78 +chr1 47276919 47276919 A T unknown 79.62 75 29.91 2.95 +chr1 47496983 47496983 C A het 208.99 86 26.30 8.36 +chr1 47603127 47603127 G A het 69.89 116 16.20 0.60 +chr1 47728733 47728733 C A het 120.76 103 28.94 1.17 +chr1 47767914 47767914 G A hom 2237.33 69 33.31 32.43 +chr1 48690229 48690229 C A unknown 41.26 7 24.99 10.31 +chr1 48701334 48701334 C T unknown 42.92 32 29.45 2.38 +chr1 48713278 48713278 A T unknown 133.73 88 34.20 3.52 +chr1 48790908 48790908 C A het 49.94 128 30.73 0.39 +chr1 49179790 49179790 G C unknown 31.02 5 17.55 6.20 +chr1 50957411 50957411 A T het 331.58 97 37.97 3.42 +chr1 51253912 51253912 A G het 43.11 44 27.65 1.05 +chr1 51312472 51312472 A C het 50.03 20 22.49 3.57 +chr1 51774929 51774929 T C unknown 123.55 152 36.43 1.72 +chr1 52302073 52302073 C A het 272.58 95 26.90 2.87 +chr1 52402856 52402856 T G hom 169.29 13 21.13 13.02 +chr1 52446578 52446578 T A het 591.64 101 18.78 5.86 +chr1 52498841 52498841 T C het 455.99 153 37.32 19.83 +chr1 52646257 52646257 A C unknown 108.81 28 16.80 10.88 +chr1 52820227 52820227 T C unknown 44.87 112 34.22 0.75 +chr1 53236871 53236871 A C unknown 70.01 223 36.74 1.40 +chr1 53461255 53461255 A C het 139 53 35.70 10.69 +chr1 53461314 53461314 T C het 36.79 88 32.09 1.05 +chr1 53504598 53504598 C A het 63.32 149 34.49 0.59 +chr1 53547716 53547716 G A het 129.85 103 33.16 1.64 +chr1 54426082 54426082 A C unknown 31.99 224 37.44 1.33 +chr1 54441763 54441763 T C unknown 125.30 43 23.51 3.58 +chr1 55073524 55073524 G T unknown 33.38 48 17.67 1.85 +chr1 55075067 55075067 A G het 62.59 98 25.57 0.64 +chr1 55076238 55076238 C A het 93.83 66 18.03 1.42 +chr1 55085658 55085658 G T het 30.33 84 24.72 0.80 +chr1 55139495 55139495 A T unknown 93.62 144 32.36 1.34 +chr1 55161112 55161112 G A het 245.60 48 31.99 5.12 +chr1 55161175 55161175 G C het 70.69 32 31.09 2.21 +chr1 55165942 55165942 G A het 264.58 45 28.27 5.88 +chr1 55523666 55523666 G T het 53.72 60 24.74 1.05 +chr1 55560796 55560796 T C hom 547.37 29 25.12 20.27 +chr1 57257668 57257668 C A het 727.55 136 36.33 11.93 +chr1 57349281 57349281 T A het 119.95 151 36.05 1.04 +chr1 57476964 57476964 A C unknown 66.06 149 31.35 1.61 +chr1 57756597 57756597 G C het 189.61 90 26.51 2.11 +chr1 58352643 58352643 C A hom 38.01 3 26.39 12.67 +chr1 60563445 60563445 T C hom 680.26 36 24.18 18.90 +chr1 62228894 62228894 T A het 44.31 43 20.62 1.30 +chr1 62341157 62341157 T C hom 1283.21 51 33.30 25.16 +chr1 62739056 62739056 G C het 106.62 44 16.53 2.42 +chr1 62954714 62954714 T G het 440.10 87 30.08 5.06 +chr1 63836591 63836591 T G het 52.15 84 25.65 0.69 +chr1 63872032 63872032 T C unknown 255 122 39.00 9.44 +chr1 63991140 63991140 T C hom 1650.28 45 36.72 36.67 +chr1 64643707 64643707 T G het 370.58 146 34.84 2.54 +chr1 64709891 64709891 A G het 565.80 82 35.42 11.32 +chr1 65830213 65830213 C G unknown 45.14 133 31.62 0.89 +chr1 65830608 65830608 T C het 539.16 52 34.43 10.37 +chr1 65878500 65878500 A T unknown 39.15 121 33.98 1.09 +chr1 66074580 66074580 G A het 59.78 109 33.61 1.00 +chr1 67242087 67242087 G A unknown 216.99 120 35.33 7.00 +chr1 67292478 67292478 T A unknown 1404.10 96 36.54 21.60 +chr1 67508081 67508084 CACT - het 1238.75 149 27.84 13.04 +chr1 67633812 67633812 G T het 2330.55 139 32.11 16.77 +chr1 68628349 68628349 G A unknown 83 52 18.85 2.24 +chr1 68955044 68955044 A T unknown 53.62 37 28.19 3.83 +chr1 71093897 71093897 A G unknown 31.02 7 15.43 7.75 +chr1 71126822 71126822 G A het 306.40 54 21.74 5.67 +chr1 72740811 72740811 T A hom 281.52 39 19.57 8.28 +chr1 74701950 74701950 T A het 491.40 74 29.87 7.12 +chr1 74801768 74801768 T G het 281.69 146 35.38 1.93 +chr1 74905202 74905202 T A het 300.80 183 36.00 1.64 +chr1 74930224 74930224 A C unknown 46.11 52 36.60 2.20 +chr1 75708529 75708529 A T het 679.79 92 29.02 10.46 +chr1 76252011 76252011 G A het 2946.78 126 39.05 23.39 +chr1 78184310 78184310 T C unknown 55.74 50 18.89 1.43 +chr1 78392079 78392079 T A unknown 39.58 36 26.25 3.96 +chr1 78401724 78401724 C A het 199.64 78 23.62 2.56 +chr1 78420917 78420917 T G unknown 63.25 51 25.86 1.71 +chr1 78430080 78430080 C T het 103.37 57 29.85 1.95 +chr1 78585202 78585202 C G het 44.65 96 31.73 0.93 +chr1 84645017 84645017 T G het 141.63 38 26.99 3.73 +chr1 84988214 84988214 C - het 117.77 127 22.15 1.32 +chr1 85589940 85589940 T - het 3910 179 38.68 21.84 +chr1 85648620 85648620 C T hom 7706.01 234 33.96 32.93 +chr1 85815943 85815943 A T unknown 63.08 156 28.03 0.99 +chr1 86249911 86249911 A G hom 4584.01 141 35.16 32.51 +chr1 86453334 86453334 A T het 185.53 77 27.85 3.20 +chr1 86591837 86591837 G A hom 3146.54 108 39.83 29.13 +chr1 86611702 86611702 T C unknown 233.14 79 33.81 9.71 +chr1 86820267 86820267 C T het 2791.57 145 38.91 19.25 +chr1 87043728 87043728 G A het 691.79 70 37.36 13.84 +chr1 87101278 87101278 G T unknown 52.62 91 31.48 1.50 +chr1 87101375 87101375 C G het 850.55 175 35.09 9.25 +chr1 87570289 87570289 C A het 113.09 109 32.99 1.14 +chr1 89408578 89408578 A T het 256.65 53 27.45 4.84 +chr1 89427162 89427162 T C het 536.58 162 34.63 3.31 +chr1 89520636 89520636 G A het 187.62 83 9.90 2.44 +chr1 89847372 89847372 G T hom 1127.56 171 27.00 8.48 +chr1 89887094 89887094 A C hom 52.74 58 9.27 1.95 +chr1 89887734 89887734 C G het 49.77 83 15.00 0.60 +chr1 90179578 90179578 T C het 60 172 36.45 0.47 +chr1 90399128 90399128 C T unknown 61.57 137 36.58 0.62 +chr1 90400261 90400261 A T het 147.36 136 28.55 1.23 +chr1 91405096 91405096 C T unknown 414.80 162 34.31 3.64 +chr1 91818792 91818792 A C het 289.99 147 35.74 7.44 +chr1 92200634 92200634 C T het 282.59 21 27.11 13.46 +chr1 92223976 92223976 A G hom 178.11 7 35.62 25.44 +chr1 92285359 92285359 G A hom 119.27 8 31.02 19.88 +chr1 92292502 92292502 T C hom 88.25 9 23.05 11.03 +chr1 92430318 92430318 C T unknown 64.70 97 33.88 1.47 +chr1 92446398 92446398 T A unknown 1645.56 115 35.55 19.36 +chr1 92591805 92591805 A T unknown 44.01 74 28.63 2.75 +chr1 92786179 92786179 A C unknown 61 95 32.09 1.97 +chr1 93089823 93089823 T C hom 5340.01 165 34.29 32.36 +chr1 93113058 93113058 A G unknown 40.03 134 20.35 1.18 +chr1 93128854 93128854 A G hom 87.25 7 29.84 14.54 +chr1 93160002 93160002 G A het 316.80 76 35.98 7.73 +chr1 93299230 93299230 C G het 168.58 200 28.08 0.84 +chr1 93646455 93646455 T G het 71.86 47 29.51 1.89 +chr1 93683543 93683543 C G het 671.58 63 34.70 10.66 +chr1 94058016 94058016 T C het 245.18 80 34.94 4.09 +chr1 94362318 94362318 A G unknown 66.30 209 34.61 2.29 +chr1 94972069 94972069 A C het 171.30 77 29.91 2.22 +chr1 97544771 97544771 T C hom 656.02 35 23.47 18.74 +chr1 100163838 100163838 T A het 373.55 119 16.12 3.14 +chr1 100163893 100163893 T C het 75.95 135 13.52 0.78 +chr1 100327183 100327183 T C unknown 196.99 162 34.79 4.92 +chr1 100472604 100472604 A G unknown 403.99 124 34.54 11.88 +chr1 100535292 100535292 C G het 194.87 87 27.73 3.00 +chr1 100609767 100609767 T G het 93.92 63 26.60 1.81 +chr1 100731820 100731820 G A hom 842.58 36 28.78 23.40 +chr1 100746846 100746846 T A unknown 51.55 130 29.64 0.55 +chr1 100756945 100756945 T G unknown 32.87 106 23.52 0.48 +chr1 101437925 101437925 T C hom 190.59 33 25.65 6.35 +chr1 103364396 103364396 C T hom 632.56 78 29.72 11.10 +chr1 103412497 103412497 G T het 340.34 81 24.96 4.20 +chr1 103445223 103445223 G A het 91.07 87 35.35 4.79 +chr1 104116559 104116559 A C het 47.18 171 8.39 0.42 +chr1 104798629 104798629 G A unknown 34.02 8 15.91 6.80 +chr1 106240803 106240803 T C het 179.86 99 14.61 2.12 +chr1 107998206 107998206 A T het 32 139 35.61 0.91 +chr1 107998298 107998298 G A het 185.99 124 38.43 8.09 +chr1 108003121 108003121 A T het 401.12 78 28.21 5.14 +chr1 108507302 108507302 G T het 116.28 49 28.63 3.06 +chr1 108735260 108735260 G T het 56.41 132 22.17 0.54 +chr1 109261498 109261498 T A unknown 34 315 37.56 0.47 +chr1 109309608 109309608 T G het 152.09 44 32.66 5.43 +chr1 109394684 109394684 C T het 121.62 147 29.41 0.83 +chr1 109704444 109704444 G T het 107.36 79 30.70 1.36 +chr1 109715029 109715029 T G het 70.45 58 34.00 1.35 +chr1 109794690 109794690 T A unknown 43.99 206 29.88 0.83 +chr1 109795318 109795318 G T unknown 97.55 181 35.87 1.19 +chr1 109813236 109813236 T C het 113.95 46 28.71 3.17 +chr1 109837766 109837766 C A het 260.80 113 33.61 2.90 +chr1 109964605 109964605 T C het 272.80 45 36.82 8.02 +chr1 110020489 110020489 C G het 66.74 145 27.42 0.46 +chr1 110162879 110162879 A G het 155.65 108 30.02 1.44 +chr1 110170089 110170089 A T het 72.55 129 38.78 1.19 +chr1 110210780 110210780 C G unknown 254.39 58 16.35 5.92 +chr1 110279701 110279701 C T het 589.58 126 24.37 4.68 +chr1 110279728 110279728 T G unknown 219.80 163 26.48 1.77 +chr1 110282843 110282843 C T unknown 160.84 65 40.17 4.60 +chr1 110302284 110302284 T G het 222.58 50 29.75 4.45 +chr1 110559324 110559324 A C het 225.62 236 37.33 1.67 +chr1 110604033 110604033 G T het 200.58 66 25.37 3.04 +chr1 110709524 110709524 G C het 196.37 39 27.58 6.55 +chr1 110884577 110884577 A T unknown 84.45 271 20.63 0.40 +chr1 110888107 110888107 G T het 112.10 81 24.85 1.38 +chr1 111702095 111702095 A G het 179.79 153 27.81 1.30 +chr1 111731057 111731057 C T het 169.60 96 31.51 1.77 +chr1 111784158 111784158 T C hom 259.47 29 32.74 12.36 +chr1 111824168 111824168 A C het 232.88 51 22.92 4.57 +chr1 111893958 111893958 A G het 865.95 99 36.05 13.12 +chr1 111964137 111964137 A - het 275.54 89 24.14 3.10 +chr1 111969134 111969134 T G het 490.58 237 32.64 2.07 +chr1 112033456 112033456 - A unknown 125.25 34 37.82 11.39 +chr1 112270061 112270061 C T het 48.99 153 33.58 1.40 +chr1 113140611 113140611 A C unknown 50.99 239 35.03 2.55 +chr1 113232137 113232137 A C unknown 132.40 222 32.93 1.26 +chr1 113344496 113344496 G A unknown 34.77 7 20.08 6.95 +chr1 113460358 113460358 T G het 265.60 139 32.06 1.91 +chr1 113641350 113641350 C T het 149.41 82 31.08 2.49 +chr1 114281438 114281438 C A het 35.45 151 20.27 0.33 +chr1 114438435 114438435 T G unknown 56.18 143 40.35 1.81 +chr1 114506101 114506101 A T hom 59.28 50 13.55 1.69 +chr1 114514620 114514620 T C unknown 49.55 92 32.91 1.15 +chr1 114522185 114522185 C G unknown 34.40 169 35.79 0.80 +chr1 114641685 114641685 A G het 2638.54 120 30.43 21.99 +chr1 114841811 114841811 C T unknown 37.02 10 15.51 5.29 +chr1 114940495 114940495 G C het 60.81 172 33.09 0.41 +chr1 115168097 115168097 T C hom 2452.56 166 36.10 21.90 +chr1 115235995 115235995 A T het 239.63 56 21.50 4.28 +chr1 115576023 115576023 A G hom 5636.01 160 39.61 35.23 +chr1 115615611 115615611 G A unknown 45.99 121 37.17 1.84 +chr1 116107866 116107866 A T unknown 120.91 159 17.41 1.73 +chr1 116333111 116333111 C T het 181.45 12 36.54 18.15 +chr1 116569530 116569530 G C hom 7826.01 338 29.98 23.15 +chr1 116675901 116675901 T G het 160.83 210 39.57 1.00 +chr1 117618263 117618263 G A unknown 42.92 84 30.51 2.04 +chr1 117699162 117699162 T G het 30.61 64 30.27 0.75 +chr1 119427921 119427921 C A het 195.81 127 36.70 2.04 +chr1 119683167 119683167 T C het 46.36 50 30.49 1.72 +chr1 119934693 119934693 A G het 36.35 59 35.81 1.35 +chr1 120087990 120087990 A T het 30.50 59 37.10 1.27 +chr1 120101640 120101640 G T het 54 38 23.59 2.57 +chr1 120150949 120150949 T C unknown 114.84 44 19.25 4.25 +chr1 120295827 120295827 G T het 83.75 69 37.90 1.71 +chr1 120342533 120342533 A C het 122.55 144 33.02 1.78 +chr1 120342534 120342534 C G het 151.26 147 32.28 1.34 +chr1 120466563 120466563 T A unknown 31.09 113 32.38 1.41 +chr1 120484204 120484204 G T het 101.65 99 26.23 1.03 +chr1 120543906 120543906 C T unknown 77.98 6 23.33 19.49 +chr1 120904830 120904830 C T unknown 56.29 19 13.44 4.02 +chr1 121485071 121485071 C A hom 34.01 45 12.16 1.21 +chr1 142828938 142828938 C A het 88.28 41 16.38 2.94 +chr1 143744160 143744160 G A hom 288.55 117 14.45 2.47 +chr1 144014068 144014068 T C het 2684.58 177 34.57 15.17 +chr1 144679945 144679945 C T unknown 32.01 106 10.46 1.03 +chr1 144854491 144854491 T G het 32.39 62 9.77 0.79 +chr1 144866662 144866662 T C unknown 52.79 560 15.10 0.19 +chr1 144882823 144882823 C T het 3385.01 339 32.28 9.99 +chr1 144882912 144882912 G T het 354.58 174 30.21 2.04 +chr1 144917919 144917919 A G het 281.59 113 18.12 2.49 +chr1 144930571 144930571 C A het 3066.58 236 38.97 12.99 +chr1 145558959 145558959 A T unknown 85.99 139 32.77 1.09 +chr1 145562087 145562087 G A het 529.58 85 29.66 6.23 +chr1 145577585 145577585 C G hom 120.79 14 18.92 8.63 +chr1 145695923 145695923 T G hom 108.51 8 22.68 18.09 +chr1 146583350 146583350 C T het 352.58 124 22.61 2.84 +chr1 146583396 146583396 G T het 225.58 217 21.53 1.04 +chr1 146633933 146633933 G A unknown 973.63 59 33.03 22.64 +chr1 146675551 146675551 A G hom 2239.98 114 26.03 19.65 +chr1 146727763 146727763 G A unknown 96.41 9 32.71 24.10 +chr1 146765125 146765125 G A het 159.27 23 37.08 22.75 +chr1 146791289 146791289 G A het 1046.58 112 32.18 9.34 +chr1 147091051 147091051 C G het 219.59 224 31.60 0.98 +chr1 147119273 147119273 G A het 1403.58 148 36.15 9.48 +chr1 147231160 147231160 T A het 80.33 140 32.75 0.80 +chr1 148004625 148004625 C A het 150.42 89 18.78 1.69 +chr1 148004716 148004716 C A het 310.03 298 8.50 1.04 +chr1 148009989 148009989 A C het 145.80 232 12.22 0.84 +chr1 148015284 148015284 G C het 100.11 78 13.82 2.71 +chr1 149047122 149047122 G T unknown 40.47 78 21.60 0.92 +chr1 149093905 149093905 C T het 319.84 292 22.01 1.52 +chr1 149094412 149094412 A G het 512.58 221 21.18 2.32 +chr1 149907258 149907258 C T unknown 227.99 146 40.43 9.50 +chr1 150129614 150129614 C G het 73.20 215 38.83 0.44 +chr1 150131130 150131130 T G het 210.79 186 30.98 1.41 +chr1 150199123 150199123 G T unknown 37.06 36 26.74 2.65 +chr1 150416913 150416913 A G het 1766.79 199 34.65 12.80 +chr1 150444664 150444664 A G het 158.60 224 32.94 1.40 +chr1 150445770 150445770 T G het 104.99 280 33.66 1.44 +chr1 150482616 150482616 A G het 117.59 245 29.77 0.90 +chr1 150484004 150484004 G A het 540.79 125 28.60 6.01 +chr1 150485248 150485248 A C unknown 224.99 359 36.40 2.78 +chr1 150804263 150804263 A C het 174.65 94 27.14 1.86 +chr1 150876686 150876686 G T unknown 33.31 41 9.98 1.07 +chr1 150941027 150941027 G T unknown 44.19 97 33.58 2.60 +chr1 150959177 150959177 C G unknown 240.22 130 35.84 2.56 +chr1 150991221 150991221 A G unknown 126.07 41 32.97 9.01 +chr1 151065667 151065667 G C het 1306.58 153 32.84 8.54 +chr1 151109641 151109641 G A unknown 168.42 18 30.07 11.23 +chr1 151211688 151211688 C G het 213.89 112 31.73 2.12 +chr1 151338570 151338570 G A hom 269.14 17 28.21 15.83 +chr1 151752383 151752383 G A unknown 166.80 99 33.58 3.21 +chr1 151755415 151755415 T C unknown 33.50 175 24.51 0.45 +chr1 152081921 152081921 G C het 1291.55 174 36.35 14.85 +chr1 152188176 152188176 G A unknown 64.45 86 13.39 1.65 +chr1 152192542 152192542 C T het 49.81 370 16.41 0.18 +chr1 152193544 152193544 A G hom 812.57 72 22.35 11.29 +chr1 152487872 152487872 C T het 348.75 55 27.51 6.34 +chr1 152671397 152671397 A G het 385.58 239 18.28 1.61 +chr1 152710233 152710233 C A unknown 83 40 23.20 3.77 +chr1 152733301 152733301 T A het 1875.58 164 37.49 11.44 +chr1 152733573 152733573 C G het 198.62 89 31.04 2.23 +chr1 152759720 152759720 C A het 130.79 265 24.19 0.95 +chr1 152958045 152958045 T G het 441.58 90 30.00 4.91 +chr1 153004721 153004721 A T hom 1314.56 127 31.98 14.94 +chr1 153004820 153004820 G C unknown 48.75 226 27.98 1.11 +chr1 153066262 153066262 T C het 186.43 102 16.64 2.27 +chr1 153122620 153122620 T C hom 1352.57 102 33.64 13.26 +chr1 153353198 153353198 A G unknown 335.33 115 36.89 6.10 +chr1 153516151 153516151 G C het 423.81 108 28.73 5.73 +chr1 153517093 153517093 C - unknown 974.75 109 25.15 11.89 +chr1 153580258 153580258 T A het 83.79 69 31.51 1.78 +chr1 153914616 153914616 G A unknown 36.78 53 25.26 0.92 +chr1 153924491 153924491 C G het 61.74 94 30.00 1.40 +chr1 153956125 153956125 C G unknown 33.34 46 13.65 1.19 +chr1 153963833 153963833 T A hom 31.46 19 24.56 1.97 +chr1 153964603 153964603 C A het 45.25 84 27.15 0.79 +chr1 153973561 153973561 A T unknown 132.12 106 29.03 2.20 +chr1 154192316 154192316 G T het 114.97 46 22.43 3.11 +chr1 154232502 154232502 T G het 142.76 141 32.80 1.43 +chr1 154243457 154243457 A T het 547.55 99 34.03 10.33 +chr1 154315689 154315689 C G het 228.58 171 31.29 1.34 +chr1 154320804 154320804 G A het 92.03 49 27.00 2.49 +chr1 154403177 154403177 A C het 69.83 60 25.80 1.52 +chr1 154492702 154492702 G A hom 1650.06 53 34.55 31.13 +chr1 154523563 154523563 A T het 38.96 85 27.96 0.66 +chr1 154523903 154523903 C G het 383.59 181 31.02 2.12 +chr1 154698498 154698498 G T het 39.79 66 27.12 1.11 +chr1 154818509 154818509 C G unknown 36.77 24 11.49 3.68 +chr1 154940168 154940168 T G unknown 53.69 159 24.83 0.59 +chr1 154988776 154988776 T A unknown 51.54 68 25.95 1.01 +chr1 155013794 155013794 G A het 278.70 33 22.75 8.45 +chr1 155033153 155033153 G C het 263.59 94 28.31 2.80 +chr1 155106338 155106338 C T het 389.58 98 32.48 3.98 +chr1 155148520 155148520 G A het 486.99 172 23.22 10.82 +chr1 155149546 155149546 C T het 410.79 219 33.47 2.35 +chr1 155151079 155151079 C G het 46.36 123 36.08 0.81 +chr1 155165881 155165881 A T het 117.92 294 37.60 0.55 +chr1 155172852 155172852 G T het 195.79 66 29.78 4.08 +chr1 155231852 155231852 A T het 85.11 54 29.02 1.58 +chr1 155237756 155237756 G A het 251.58 133 27.14 1.89 +chr1 155261662 155261662 C G het 89.92 96 29.73 1.41 +chr1 155269776 155269776 A G het 190.92 76 32.33 3.29 +chr1 155324384 155324384 T G unknown 57.99 224 34.79 2.15 +chr1 155449539 155449539 T C het 50.07 88 22.40 0.93 +chr1 155657968 155657968 A C hom 41 58 11.67 1.28 +chr1 155837772 155837772 G T unknown 79.81 87 27.37 1.81 +chr1 155891045 155891045 A C het 309.03 22 32.59 14.05 +chr1 155922402 155922402 C T het 86.44 64 23.06 1.66 +chr1 155932763 155932763 G T het 37.13 137 36.30 0.57 +chr1 156040027 156040027 T A unknown 104.08 79 26.68 1.65 +chr1 156047086 156047086 C T unknown 53.66 75 26.01 1.28 +chr1 156106736 156106736 A T het 295.59 59 34.05 5.01 +chr1 156130298 156130298 A G het 297.58 65 25.02 4.58 +chr1 156221303 156221303 A T het 44.78 162 35.17 0.39 +chr1 156228753 156228753 C A het 32.23 57 30.10 0.95 +chr1 156352015 156352015 C G unknown 80.08 114 34.92 1.29 +chr1 156534525 156534525 A C hom 2035.01 108 31.76 18.84 +chr1 156536133 156536133 A G hom 1162.38 45 29.25 25.83 +chr1 156540738 156540738 T C hom 49.01 6 22.41 12.25 +chr1 156626920 156626920 T C unknown 71.05 24 15.97 5.07 +chr1 156639516 156639516 C G het 178.01 93 26.93 1.91 +chr1 156707558 156707558 - AA het 420.60 129 33.05 3.26 +chr1 156851265 156851265 C T het 152.40 16 28.25 9.53 +chr1 156877234 156877234 T G het 76.20 103 30.97 0.99 +chr1 156877752 156877752 A G unknown 43.40 17 26.07 4.82 +chr1 156879892 156879892 G A unknown 31.90 80 31.57 0.68 +chr1 156908243 156908243 G T unknown 74.50 109 24.86 0.87 +chr1 156909917 156909917 T A het 60.17 31 17.84 4.01 +chr1 156917149 156917149 C T unknown 33.17 78 24.13 2.07 +chr1 156949054 156949054 T C unknown 59.02 88 32.27 1.34 +chr1 157044074 157044077 CTGA - het 569.75 57 31.07 14.99 +chr1 157062707 157062707 G T unknown 57.46 60 29.09 2.87 +chr1 157557022 157557022 G A het 39.06 111 23.68 1.18 +chr1 157648590 157648590 C A het 125.82 119 32.63 1.35 +chr1 157771817 157771817 T C het 63.25 152 21.88 0.56 +chr1 157771931 157771931 T G het 97.80 96 20.25 1.02 +chr1 158058188 158058188 G T het 909.58 214 31.57 4.25 +chr1 158151337 158151337 G T unknown 76.33 188 31.33 0.83 +chr1 158165938 158165938 A C het 273.18 69 27.31 3.96 +chr1 158262290 158262290 G A unknown 31.64 83 34.81 0.81 +chr1 158517658 158517658 T C het 154.98 149 25.44 1.20 +chr1 158612227 158612227 A G het 49.82 160 37.51 0.44 +chr1 158641949 158641949 T A het 192.42 108 34.03 1.78 +chr1 159163929 159163929 T G het 121.10 26 21.93 8.07 +chr1 159402695 159402695 A C hom 534.34 24 27.98 22.26 +chr1 159674933 159674933 C T unknown 319.99 209 32.76 6.40 +chr1 159799698 159799698 A C het 101.88 124 28.92 0.82 +chr1 159802627 159802627 A C het 784.79 79 34.61 13.30 +chr1 159888517 159888517 G T het 32.38 66 12.12 0.62 +chr1 159889673 159889673 C A het 255.95 141 34.88 2.59 +chr1 159942616 159942616 G C het 45.76 45 19.13 1.02 +chr1 159990203 159990203 T C het 67.37 79 32.09 2.11 +chr1 160098583 160098583 G A het 49.31 96 20.15 0.67 +chr1 160146367 160146367 C T unknown 89.24 97 32.96 4.25 +chr1 160151450 160151450 T C het 2515.54 98 29.54 25.67 +chr1 160194813 160194813 G T unknown 56.88 73 26.97 1.96 +chr1 160209522 160209522 C A het 123.02 154 32.05 1.02 +chr1 160523859 160523859 A T het 407.58 183 32.84 2.23 +chr1 160717872 160717872 T G hom 301.17 34 19.37 8.86 +chr1 160788022 160788022 A T het 89.05 104 31.42 1.19 +chr1 160808731 160808731 G C het 431.60 79 27.53 5.46 +chr1 160854445 160854445 T C het 1126.57 75 41.44 15.02 +chr1 161010762 161010762 C T het 343 43 38.11 26.38 +chr1 161143235 161143235 A C het 192.79 117 33.96 2.12 +chr1 161183516 161183516 C T unknown 1877.79 206 37.90 13.81 +chr1 161185058 161185058 G T hom 944.57 111 28.88 8.51 +chr1 161197809 161197809 C A het 163.49 102 34.08 1.95 +chr1 161254181 161254181 T C het 100.82 151 29.05 0.90 +chr1 161559327 161559327 A G het 227.78 55 15.58 4.14 +chr1 161654948 161654948 T C hom 32.20 55 12.12 2.68 +chr1 161680518 161680518 T A het 1022.79 119 28.68 10.33 +chr1 161682830 161682830 G A het 117.73 148 30.05 1.11 +chr1 161698660 161698660 C A unknown 51.01 9 19.24 10.20 +chr1 161719637 161719637 C G hom 37.03 12 27.25 3.70 +chr1 161954850 161954850 T G het 710.58 109 32.63 6.52 +chr1 162335173 162335173 G T het 47.23 79 27.70 0.84 +chr1 162345091 162345091 G A hom 4637.01 165 35.14 28.10 +chr1 162353087 162353087 C G het 567.58 104 29.09 5.46 +chr1 162353303 162353303 G A het 156.56 151 34.95 2.06 +chr1 162737116 162737116 C G het 1197.58 180 30.44 6.65 +chr1 163325008 163325008 T C unknown 41.06 46 20.01 1.11 +chr1 165376030 165376030 T A unknown 84.81 127 36.85 1.46 +chr1 165634425 165634425 C G hom 1870.54 58 37.76 32.25 +chr1 165677731 165677731 A C unknown 39.99 72 41.77 2.67 +chr1 166039446 166039446 T A het 628.58 114 30.86 5.51 +chr1 166124134 166124134 A G hom 39.01 10 15.41 5.57 +chr1 166246787 166246787 C A het 347.58 106 19.71 3.28 +chr1 166591083 166591083 G C het 157.86 149 34.23 1.21 +chr1 167345511 167345511 T G het 86.32 32 23.67 7.85 +chr1 167654598 167654598 C T unknown 98.99 88 32.76 5.21 +chr1 167787265 167787265 C T het 396.79 97 38.69 6.96 +chr1 167794061 167794061 G A het 303.58 166 33.27 1.83 +chr1 167803235 167803235 A C het 88.84 75 30.00 1.18 +chr1 167985157 167985157 A T het 281.58 101 26.95 2.79 +chr1 168160705 168160705 T C unknown 39.33 112 21.89 0.84 +chr1 168665747 168665747 - T unknown 530.75 71 31.34 9.83 +chr1 168698111 168698111 T A het 47.13 116 33.36 0.55 +chr1 169511734 169511734 T C unknown 3528.01 261 36.80 19.07 +chr1 169515536 169515536 C T unknown 31.26 11 22.89 4.47 +chr1 169565144 169565144 C T het 188.83 339 35.04 0.76 +chr1 169572242 169572242 A T het 39.22 76 28.17 0.69 +chr1 169582926 169582926 A C unknown 66.98 112 21.10 0.78 +chr1 169586732 169586732 C T het 40.54 49 25.41 1.19 +chr1 169761861 169761861 G T het 112.36 81 29.38 2.44 +chr1 169792692 169792692 T C het 361.55 113 32.21 5.65 +chr1 169823790 169823790 C G het 2482.79 237 39.09 14.69 +chr1 170003562 170003562 T C unknown 55.20 106 32.52 1.90 +chr1 171077075 171077075 A T het 31.50 82 29.00 1.37 +chr1 171077165 171077165 G A hom 587.57 78 33.33 11.99 +chr1 171301033 171301033 C G unknown 189.99 110 34.57 10.56 +chr1 171544000 171544000 G A het 210.61 67 22.84 3.14 +chr1 171548952 171548952 C A het 300.93 234 34.38 1.79 +chr1 172013512 172013512 T A het 31.14 119 24.77 0.62 +chr1 172422075 172422075 C A het 267.58 124 32.28 2.16 +chr1 172431210 172431210 G A hom 154.84 14 24.75 11.06 +chr1 172431400 172431400 T C unknown 36.61 52 35.29 2.15 +chr1 172434542 172434542 C A het 221.11 85 29.49 2.95 +chr1 173526603 173526603 T A het 178.60 198 31.03 0.90 +chr1 173526606 173526606 G A het 242.59 190 30.96 1.28 +chr1 173594022 173594022 C T unknown 370 138 37.04 9.49 +chr1 173722359 173722359 A C het 55.45 90 29.67 1.21 +chr1 173878832 173878832 T C het 451.99 286 36.15 6.28 +chr1 175046821 175046821 C T het 172.56 72 34.51 2.98 +chr1 175086309 175086309 A G unknown 92.20 77 11.14 1.54 +chr1 175087908 175087908 G T het 44.49 122 20.09 0.48 +chr1 175097766 175097766 C G het 196.79 191 33.20 1.53 +chr1 175113578 175113578 T C hom 4932.01 148 35.77 33.32 +chr1 175335030 175335030 G A het 78.47 232 37.31 0.42 +chr1 175355391 175355391 A G hom 2754.05 80 39.66 34.43 +chr1 176050444 176050444 A C het 74.45 56 16.57 1.38 +chr1 176563840 176563840 T G het 101.36 117 27.11 1.08 +chr1 176708685 176708685 A G het 34.97 55 19.26 0.74 +chr1 176833618 176833618 G C het 289.82 131 34.28 2.79 +chr1 176927677 176927677 G A hom 78.76 15 20.25 7.88 +chr1 177242642 177242642 G A het 184.40 72 20.11 3.24 +chr1 177639638 177639638 C A unknown 38.77 6 19.48 12.92 +chr1 177902661 177902661 A T het 748.58 154 28.31 4.86 +chr1 177929554 177929554 C T het 2608.57 123 34.27 21.21 +chr1 177929940 177929940 G A het 1433.79 205 34.53 9.37 +chr1 178854162 178854162 C T het 781.57 81 29.96 9.65 +chr1 179004587 179004587 A T hom 62.48 126 10.50 0.68 +chr1 179077936 179077936 T A het 156.82 176 26.96 1.19 +chr1 179102299 179102299 C A het 42.33 99 11.53 0.67 +chr1 179414105 179414105 A C unknown 167.01 102 33.84 5.96 +chr1 179425771 179425771 T C unknown 42.32 71 11.19 0.88 +chr1 179557130 179557130 T A unknown 171.83 42 29.17 5.54 +chr1 179557585 179557585 A T het 94.08 144 27.00 2.85 +chr1 179557631 179557631 A T het 260.58 179 22.59 1.46 +chr1 179561872 179561872 A G unknown 51.93 93 23.27 1.13 +chr1 179983665 179983665 G A unknown 1902.56 138 39.10 22.65 +chr1 180006165 180006165 A C unknown 42.99 149 34.34 1.79 +chr1 180059811 180059811 A C unknown 1164.56 92 35.49 18.20 +chr1 181205551 181205551 A T het 40.58 247 36.05 0.38 +chr1 181548243 181548243 A G unknown 164.82 194 27.04 1.16 +chr1 181714483 181714483 T C het 577.58 121 25.92 4.77 +chr1 181721265 181721265 C T het 1656.79 206 33.52 10.97 +chr1 181763015 181763015 G A het 490.79 42 38.47 16.36 +chr1 182554702 182554702 T G unknown 64.57 174 36.84 2.23 +chr1 182554919 182554919 T A het 44.63 157 35.16 0.53 +chr1 182775207 182775207 T A het 65.86 55 33.93 1.73 +chr1 183084785 183084785 C A unknown 36.37 156 35.48 1.07 +chr1 183104079 183104079 C G het 2303.58 171 38.97 13.47 +chr1 183105399 183105399 C G het 471.23 17 38.39 27.72 +chr1 183176943 183176943 A T het 59.85 41 21.59 2.72 +chr1 183194885 183194885 C A unknown 76.84 106 26.64 1.04 +chr1 183195894 183195894 A C het 90.01 393 37.11 0.50 +chr1 183542443 183542443 C T unknown 189.36 176 35.14 5.12 +chr1 184679645 184679645 C T het 459.58 150 34.22 3.06 +chr1 185200912 185200912 T C het 115.90 48 29.59 2.52 +chr1 185267114 185267114 A G unknown 507 106 41.74 15.36 +chr1 185897797 185897797 C A unknown 83.99 202 35.55 2.33 +chr1 185931727 185931727 A C het 342.63 204 36.52 1.68 +chr1 186265948 186265948 T A het 907.58 50 28.68 18.15 +chr1 186276852 186276852 C T unknown 94.59 126 23.68 1.53 +chr1 186316732 186316732 A C unknown 34.24 12 30.34 5.71 +chr1 186375359 186375359 T A het 971.58 287 37.23 3.39 +chr1 186863332 186863332 A G unknown 84.02 87 28.14 1.47 +chr1 189959093 189959093 A G unknown 355.81 42 35.91 11.12 +chr1 192216486 192216486 T C het 129.19 114 15.70 1.29 +chr1 192548559 192548559 G C hom 237.63 22 26.20 21.60 +chr1 193065981 193065981 C T het 34.02 40 29.60 1.89 +chr1 193149957 193149957 G T het 82.40 145 36.24 0.86 +chr1 196880099 196880099 T A hom 71.01 14 27.07 7.10 +chr1 197009798 197009798 A G hom 834.82 120 33.44 13.46 +chr1 197091537 197091537 A T hom 2636.99 90 35.43 29.30 +chr1 197107864 197107864 A C unknown 120.64 103 26.09 1.77 +chr1 197407942 197407942 A G hom 784.61 24 34.72 32.69 +chr1 197896808 197896808 T A unknown 82.99 409 38.13 0.76 +chr1 198222224 198222224 A T het 132.53 205 34.57 1.04 +chr1 198703306 198703306 C T het 636.77 56 33.34 11.37 +chr1 199357095 199357095 T G unknown 85.48 57 10.51 2.85 +chr1 200143281 200143281 C T het 453.99 158 38.62 12.27 +chr1 200569460 200569460 T A het 809.91 91 28.04 8.90 +chr1 200776500 200776500 T G unknown 146.01 103 37.02 5.21 +chr1 200877850 200877850 T G het 619.99 214 38.05 13.19 +chr1 200960774 200960774 A G het 54.22 52 20.96 1.43 +chr1 200974482 200974482 A C het 276.65 116 31.78 2.38 +chr1 201058692 201058692 T C hom 453.72 19 32.85 23.88 +chr1 201096708 201096708 G A hom 41.77 5 21.86 13.92 +chr1 201165015 201165015 A C het 103.14 139 31.60 1.45 +chr1 201166435 201166435 T C hom 1596.67 58 33.99 27.53 +chr1 201337170 201337170 A G hom 290.17 17 27.62 17.07 +chr1 201351102 201351102 T A het 32.29 46 30.08 0.92 +chr1 201465270 201465270 C G het 46.16 88 21.99 1.07 +chr1 201618028 201618028 G A hom 123.41 32 17.64 3.86 +chr1 201779701 201779701 A G het 129.81 85 32.89 2.09 +chr1 201828052 201828052 A C het 53.86 138 35.14 0.84 +chr1 201860414 201860414 G C het 38.45 67 31.21 1.10 +chr1 202104516 202104516 A T het 212.42 145 31.43 1.46 +chr1 202166719 202166719 T C het 54.33 34 18.44 2.09 +chr1 202549539 202549539 T C het 35.54 68 25.09 0.67 +chr1 202878072 202878072 A T unknown 48.67 163 22.52 1.13 +chr1 203012906 203012906 G A hom 223.70 9 30.02 27.96 +chr1 203192249 203192249 T A het 541.10 240 36.52 2.25 +chr1 203467899 203467899 G C unknown 166.81 161 34.42 1.31 +chr1 203468044 203468044 T C unknown 185.79 86 29.21 2.65 +chr1 203667550 203667550 A T het 41.71 58 24.43 1.39 +chr1 203676037 203676037 T A hom 75.03 15 23.01 5.00 +chr1 203678667 203678667 G A het 94.70 138 26.37 0.69 +chr1 203787881 203787881 A T het 34.68 82 25.83 0.58 +chr1 203820232 203820232 A G het 307.58 227 19.63 1.35 +chr1 203831231 203831231 A T het 104.39 54 29.14 1.93 +chr1 203842078 203842078 A T unknown 65.27 21 20.17 3.84 +chr1 204000843 204000843 G A unknown 115.67 11 20.93 11.57 +chr1 204126526 204126526 A G unknown 54.93 131 24.80 0.89 +chr1 204128832 204128832 C T unknown 166.79 41 36.57 6.41 +chr1 204230581 204230581 G A hom 850.11 56 32.69 20.24 +chr1 204501383 204501383 C T het 581.55 128 38.82 8.08 +chr1 204588662 204588662 G T het 164.55 234 38.25 1.51 +chr1 204942542 204942542 T G unknown 85.78 113 30.80 1.34 +chr1 204949583 204949583 C A unknown 31.30 44 35.46 2.61 +chr1 204978643 204978643 C A het 2517.57 176 34.16 14.30 +chr1 205074424 205074424 C T het 188.93 34 31.98 5.90 +chr1 205130413 205130413 A G hom 4202.01 163 32.22 25.78 +chr1 205156734 205156734 T C het 41.67 109 35.98 0.72 +chr1 205417446 205417446 T G het 1247.58 157 30.02 7.95 +chr1 205499495 205499495 G A unknown 782.79 110 34.40 9.00 +chr1 205548874 205548874 T G het 50.92 129 33.81 0.78 +chr1 205561289 205561289 C A het 115.55 82 34.06 1.78 +chr1 205594652 205594652 G C unknown 154.99 137 29.45 5.00 +chr1 205594705 205594705 G A het 173.67 111 18.78 1.56 +chr1 205819034 205819034 T A het 32.07 59 29.59 2.29 +chr1 205899311 205899311 T A unknown 104.27 19 31.39 10.43 +chr1 206241439 206241439 T C het 276.58 76 24.91 3.64 +chr1 206902471 206902471 G A het 638.58 60 36.01 10.64 +chr1 207039422 207039422 C A unknown 85.99 109 34.52 2.15 +chr1 207132005 207132005 C T unknown 232.79 243 33.83 1.19 +chr1 207135546 207135546 G A het 356.99 146 41.60 8.50 +chr1 207195945 207195945 T A het 165.60 95 26.48 1.74 +chr1 207758268 207758268 A - het 324.58 122 21.72 2.66 +chr1 207870938 207870938 G A het 53.53 263 12.28 0.43 +chr1 207963629 207963629 G C het 31.29 68 21.62 0.65 +chr1 208255877 208255877 T C hom 2167.01 65 36.69 33.34 +chr1 208276396 208276396 A C unknown 40.66 24 21.63 2.26 +chr1 209406173 209406173 A G het 634.84 62 19.97 10.24 +chr1 209785431 209785431 G A het 64.83 97 28.63 1.32 +chr1 209880509 209880509 A - het 458.79 68 28.06 8.34 +chr1 210439372 210439372 T C het 104.38 122 12.04 0.86 +chr1 210560912 210560912 T C het 128.62 99 35.77 1.30 +chr1 210856585 210856585 G T unknown 2352.79 296 33.03 10.74 +chr1 211033278 211033278 T G het 415.94 52 19.54 8.00 +chr1 211033413 211033413 T C hom 314.99 77 13.40 4.09 +chr1 211545649 211545649 T - het 166.96 145 26.68 4.39 +chr1 212154588 212154588 A G het 113.90 49 24.78 2.53 +chr1 212208745 212208745 T A unknown 119.82 106 36.69 1.56 +chr1 212560327 212560327 A G hom 2043.57 135 32.92 15.14 +chr1 213146944 213146944 A G het 415.37 23 30.14 18.06 +chr1 213174095 213174095 A C het 282.58 70 32.95 4.04 +chr1 213178340 213178340 G A hom 2264.06 65 35.91 34.83 +chr1 213840987 213840987 C G hom 214.77 16 21.74 13.42 +chr1 214557129 214557129 G T unknown 32.99 77 33.32 2.06 +chr1 214566952 214566952 A G hom 584.68 22 30.83 26.58 +chr1 214637882 214637882 A G hom 197.35 30 29.62 6.58 +chr1 215256888 215256888 G A unknown 34.14 18 20.64 17.07 +chr1 215345264 215345269 TCTCTC - hom 463.02 53 15.17 9.65 +chr1 215802207 215802207 G C het 79.56 143 26.89 1.14 +chr1 216107915 216107915 G A unknown 238.07 83 30.38 10.82 +chr1 216260117 216260117 G A unknown 62.81 123 30.59 0.70 +chr1 217438561 217438561 C T hom 47.01 4 26.71 15.67 +chr1 217664977 217664977 A C unknown 95.52 143 32.10 0.97 +chr1 217783538 217783538 C A unknown 156.85 164 27.84 1.51 +chr1 217915513 217915513 C G het 177.79 185 29.38 1.27 +chr1 220142387 220142387 T A unknown 42.55 103 32.98 0.99 +chr1 220197545 220197545 C T unknown 437.79 71 35.28 8.42 +chr1 220406093 220406093 A T het 307.59 73 29.82 4.21 +chr1 220831192 220831192 T G het 470.61 47 33.37 10.01 +chr1 222697088 222697088 G A het 1024.79 103 40.72 13.66 +chr1 222734861 222734861 C T het 530.99 65 25.42 8.17 +chr1 222919748 222919748 G A hom 952.26 37 31.33 28.01 +chr1 223178471 223178471 A C unknown 73.14 196 36.79 0.70 +chr1 223178797 223178797 G C het 116.55 182 35.31 1.10 +chr1 223814682 223814682 A T unknown 159.79 62 34.53 3.72 +chr1 224318151 224318151 - TTG hom 2864 71 26.77 40.34 +chr1 225688896 225688896 C T het 38.20 65 26.20 0.87 +chr1 226016508 226016508 T G unknown 41 73 30.38 2.05 +chr1 226036309 226036309 A G unknown 146.99 91 35.84 7.74 +chr1 226048669 226048669 A T het 31.81 197 29.28 0.31 +chr1 226475334 226475334 T G het 76.59 155 28.20 1.30 +chr1 226556094 226556094 T C hom 1648.14 72 27.96 22.89 +chr1 226558284 226558284 A G unknown 43.72 84 35.92 2.08 +chr1 226825393 226825393 A C unknown 34.85 79 36.03 1.58 +chr1 227069677 227069677 T C hom 792.71 93 29.28 8.52 +chr1 227239746 227239746 G T unknown 1902.56 155 36.00 18.47 +chr1 227680868 227680868 T C unknown 133.23 22 21.31 8.88 +chr1 227838754 227838754 G A het 211.68 151 18.27 1.40 +chr1 227922267 227922267 C A het 98.94 47 26.95 2.41 +chr1 228289220 228289220 C T het 138.84 123 34.52 1.53 +chr1 228295564 228295564 C A het 78.64 42 28.31 2.38 +chr1 228333223 228333223 C G het 59.28 49 24.60 2.96 +chr1 228335317 228335317 A C het 87.08 75 24.25 1.16 +chr1 228444741 228444741 C T hom 243.15 18 26.12 15.20 +chr1 228447331 228447331 A C het 75.25 190 13.57 0.53 +chr1 228456394 228456394 G T het 84.96 122 20.48 0.91 +chr1 228461408 228461408 - G het 969.22 45 23.82 21.54 +chr1 228462080 228462080 A C het 30.03 89 29.31 1.88 +chr1 228486404 228486404 C T het 530.55 126 26.54 8.70 +chr1 228509786 228509786 C T het 243.83 146 33.36 2.32 +chr1 228550497 228550497 A T unknown 38.97 29 28.70 1.50 +chr1 228553803 228553803 G C het 118.81 131 35.77 1.28 +chr1 228596126 228596126 A G het 109.23 106 33.16 2.32 +chr1 228699477 228699477 T C het 1917.62 138 32.69 13.90 +chr1 229633944 229633944 G A unknown 40.42 134 36.18 0.47 +chr1 229636467 229636467 A G hom 188.13 36 20.30 5.88 +chr1 229665889 229665889 A T het 1446.78 106 29.36 13.65 +chr1 229841163 229841163 T A het 195.65 133 15.48 1.47 +chr1 230372045 230372045 A G het 160.87 62 20.23 2.77 +chr1 230401213 230401213 A G het 980.79 230 35.94 5.80 +chr1 230497111 230497111 G A unknown 42.25 10 30.44 5.28 +chr1 230991374 230991374 T G het 39.59 69 22.77 1.58 +chr1 231057310 231057310 C T het 1225.58 66 28.69 18.57 +chr1 231156029 231156029 A G hom 42.01 3 27.81 21.00 +chr1 231335945 231335945 G A het 581.58 201 30.76 2.89 +chr1 231376708 231376708 C A het 814.58 128 31.76 6.36 +chr1 231487418 231487418 C T unknown 276 80 34.92 14.53 +chr1 232575315 232575315 A T unknown 31.99 103 36.25 1.23 +chr1 232601023 232601023 C T unknown 55.99 243 36.56 1.00 +chr1 233121791 233121791 G A het 929.58 101 28.17 9.20 +chr1 233122272 233122272 T C unknown 62.99 82 34.94 3.50 +chr1 233314964 233314964 G A het 446.72 206 36.34 2.92 +chr1 233489529 233489529 G A het 925.58 99 41.59 9.35 +chr1 233767008 233767008 T A het 249.99 106 34.51 8.93 +chr1 234367549 234367549 T C hom 97.35 40 12.15 2.70 +chr1 234367565 234367565 G C het 31.15 51 13.93 1.04 +chr1 234563556 234563556 T A unknown 133.06 35 27.64 5.12 +chr1 235291821 235291821 C G unknown 39.66 60 28.32 1.17 +chr1 235384945 235384945 G T het 41.24 71 22.84 0.98 +chr1 235896808 235896808 A C het 294.58 110 34.78 2.68 +chr1 236154012 236154012 C T het 61.28 13 33.03 6.81 +chr1 236192928 236192928 C G unknown 49.72 55 32.61 3.31 +chr1 236700857 236700857 C T hom 1850.72 65 36.36 28.47 +chr1 236703962 236703962 A C het 420.58 170 29.41 2.47 +chr1 236706425 236706425 G A hom 1536.72 55 36.50 27.94 +chr1 236718686 236718686 C T het 753.79 235 36.55 4.71 +chr1 236740198 236740198 C T het 34.02 191 37.61 0.77 +chr1 236755814 236755814 G A hom 866.65 49 27.88 17.69 +chr1 236902594 236902594 C G hom 5614.01 165 33.11 34.02 +chr1 236908023 236908023 G A het 130.77 70 26.77 1.87 +chr1 236983534 236983534 C G het 1330.58 180 18.67 7.39 +chr1 237001926 237001926 A G het 946.58 124 36.46 7.63 +chr1 237023333 237023333 T C het 686.58 44 35.67 15.60 +chr1 237057737 237057737 C G unknown 40.03 153 32.45 1.03 +chr1 237519194 237519194 A C het 30.51 89 31.95 0.60 +chr1 237729774 237729774 G A hom 1224.99 42 32.64 29.17 +chr1 240334350 240334350 T C het 90.94 198 20.71 0.74 +chr1 241946682 241946682 A G unknown 40.23 56 25.02 2.37 +chr1 241995676 241995676 T G het 186.01 97 18.57 1.92 +chr1 242030151 242030151 A G het 1883.47 81 34.70 23.25 +chr1 242374995 242374995 G T het 317.58 31 31.47 10.24 +chr1 243138354 243138354 A G hom 62.65 29 12.19 3.69 +chr1 243433535 243433535 C G unknown 39.59 70 33.66 1.16 +chr1 243507680 243507680 - A het 131.25 47 23.13 8.75 +chr1 243581269 243581269 G A het 172.87 154 32.92 1.12 +chr1 243828230 243828230 A G het 91.69 52 19.30 1.76 +chr1 245318772 245318772 A G het 220.42 109 36.07 2.02 +chr1 246714636 246714636 T A het 103.40 110 30.57 1.36 +chr1 246981266 246981266 T C hom 232.48 43 17.78 5.41 +chr1 247202032 247202032 G T het 834.59 61 30.24 13.68 +chr1 247263973 247263973 T C het 200.99 230 22.13 3.05 +chr1 247323260 247323260 C A unknown 46.12 15 31.79 6.59 +chr1 247347693 247347693 T G het 31.99 57 17.89 0.82 +chr1 247464067 247464067 G A het 38.74 140 26.64 0.57 +chr1 247588878 247588878 C A het 54.86 125 33.45 0.81 +chr1 247597620 247597620 T C het 32.62 70 32.09 0.67 +chr1 247614386 247614386 T C het 237.99 341 32.73 2.94 +chr1 247614932 247614932 A C het 283.80 106 25.23 3.84 +chr1 247695130 247695130 C T het 62.28 202 32.46 0.43 +chr1 247752019 247752019 G C unknown 626.99 283 36.61 9.95 +chr1 247835908 247835908 T A hom 2877.56 223 38.81 17.55 +chr1 248059476 248059476 A C hom 1833.57 132 31.82 13.89 +chr1 248247982 248247982 T G het 59 36 19.26 1.90 +chr1 248262942 248262942 A C het 98.79 263 37.01 0.51 +chr1 248263543 248263543 A T het 105.87 217 32.40 0.67 +chr1 248487638 248487638 A G unknown 99.95 333 6.56 0.41 +chr1 248722332 248722332 A G unknown 196.95 64 22.93 3.65 +chr1 248801566 248801566 T G hom 802.70 41 24.27 19.58 +chr1 248845097 248845097 C T het 2533.57 149 38.45 17.00 +chr1 249066247 249066247 C A unknown 37.28 33 19.49 1.62 +chr2 264895 264895 G C hom 146.70 13 17.27 12.22 +chr2 447051 447051 G A hom 48.01 3 33.24 16.00 +chr2 672740 672740 C A unknown 456.79 61 28.68 9.93 +chr2 672746 672746 G A unknown 74.80 65 27.44 1.53 +chr2 1497933 1497933 G A het 147.67 63 37.84 2.34 +chr2 1651842 1651842 C A hom 1863.56 184 31.86 13.91 +chr2 1680788 1680788 C A het 76.98 128 35.96 0.80 +chr2 2500150 2500150 G A unknown 41.01 7 18.22 6.84 +chr2 3504819 3504819 A G unknown 161.10 31 36.85 8.48 +chr2 3800251 3800251 C T het 100.21 147 36.19 0.94 +chr2 4089316 4089316 A G unknown 33.02 11 13.82 5.50 +chr2 4094988 4094988 G C hom 88.25 4 33.58 22.06 +chr2 8910976 8910976 C T het 268.58 78 30.99 3.44 +chr2 8943291 8943291 G A unknown 165.45 32 19.79 6.62 +chr2 9517204 9517204 C G het 376.58 102 32.08 3.69 +chr2 9568955 9568955 A T het 46.89 36 31.39 1.30 +chr2 9580540 9580540 - T het 1209.68 83 33.35 14.57 +chr2 9616161 9616161 C G unknown 204.79 48 38.44 5.53 +chr2 9642478 9642478 C T hom 1542.57 85 41.21 18.15 +chr2 9891483 9891483 A T hom 41.28 3 34.78 13.76 +chr2 10132410 10132410 T C het 148.84 20 30.79 8.76 +chr2 10564740 10564740 G T unknown 82.32 26 29.87 5.49 +chr2 10909015 10909015 C A het 51.34 70 31.80 0.97 +chr2 10942567 10942567 G A het 495.55 83 33.04 10.11 +chr2 11053033 11053033 T G het 171.17 49 29.55 3.49 +chr2 11351980 11351980 A T het 39.32 48 26.19 1.01 +chr2 11725989 11725989 A C het 50.59 140 31.23 0.73 +chr2 11750783 11750783 C T het 45.10 65 32.48 0.69 +chr2 11780712 11780712 C G hom 131.85 17 23.12 8.79 +chr2 16736289 16736289 C G het 219.58 49 24.89 4.48 +chr2 17860174 17860174 A T unknown 61.58 74 29.42 1.14 +chr2 17877524 17877524 A T unknown 79.40 79 30.97 1.42 +chr2 17881412 17881412 G A het 422.58 93 30.36 4.54 +chr2 20130338 20130338 T G het 504.58 143 34.30 3.53 +chr2 20189880 20189880 C G unknown 44.35 13 22.14 6.34 +chr2 20451531 20451531 C T het 74.64 93 30.75 2.02 +chr2 20494200 20494200 T - het 1250.54 159 25.62 7.87 +chr2 20823612 20823612 A G hom 457.42 26 23.69 17.59 +chr2 21230174 21230174 G T unknown 33.12 125 35.39 0.38 +chr2 21233520 21233520 A G het 127.60 165 35.10 0.77 +chr2 23621999 23621999 G T het 92.90 195 18.02 0.48 +chr2 23907443 23907443 C A het 115.79 140 30.36 1.19 +chr2 23926233 23926233 C T unknown 38.19 7 34.73 12.73 +chr2 24087621 24087621 A C het 337.79 72 26.12 7.19 +chr2 24253705 24253705 A C unknown 38.12 71 34.44 1.82 +chr2 24276820 24276820 G T unknown 33.68 139 26.59 0.50 +chr2 24291445 24291445 C T het 475.58 42 27.51 11.32 +chr2 24307128 24307128 C T het 40.73 83 31.14 0.66 +chr2 24345436 24345436 T A unknown 133.11 173 38.47 1.04 +chr2 24933689 24933689 A C het 284.26 26 33.27 11.37 +chr2 24985555 24985555 G T het 34.86 250 32.72 0.30 +chr2 24991238 24991238 T G het 215.64 160 37.04 1.35 +chr2 25038268 25038268 G A het 1206.58 183 36.97 6.59 +chr2 25042838 25042838 G C het 48.47 83 30.98 0.79 +chr2 25376530 25376530 G C hom 58.38 21 20.01 3.43 +chr2 25468758 25468758 A T het 143.30 77 30.63 1.86 +chr2 25470540 25470540 A G unknown 178.10 152 25.18 2.07 +chr2 26022277 26022277 T C het 340.99 248 29.78 5.88 +chr2 26508187 26508187 A G unknown 354 69 38.67 18.63 +chr2 26532019 26532019 T G het 81.35 170 33.61 0.64 +chr2 26534455 26534455 T G unknown 99.96 140 30.28 1.45 +chr2 26537499 26537499 A C hom 2100.98 67 33.12 31.36 +chr2 26590118 26590118 C T het 1459.58 134 38.54 10.89 +chr2 26663215 26663215 A G unknown 51.03 29 11.52 7.29 +chr2 26677810 26677810 A G hom 384.01 24 22.34 16.00 +chr2 26679382 26679382 A T het 115.72 97 26.14 1.54 +chr2 26703163 26703163 A G het 227.95 96 28.35 3.12 +chr2 26750782 26750782 G A het 134.99 94 29.19 6.43 +chr2 27150240 27150240 T G het 175.80 110 36.61 1.60 +chr2 27236036 27236036 G A unknown 65.81 66 28.95 1.27 +chr2 27259368 27259368 T A het 309.59 222 28.94 1.39 +chr2 27275924 27275924 A C het 44.56 139 27.42 0.81 +chr2 27278594 27278594 C A het 60.99 153 34.63 1.79 +chr2 27324708 27324708 C A het 149.79 91 26.31 2.14 +chr2 27353630 27353630 G C het 502.79 59 34.22 11.97 +chr2 27454366 27454366 A C unknown 39.98 103 29.73 0.80 +chr2 27598537 27598537 C G het 217.59 121 29.66 1.80 +chr2 27669137 27669137 A G unknown 214.99 154 31.22 5.51 +chr2 27707054 27707054 T A het 319.88 73 23.07 4.38 +chr2 27789916 27789916 C T unknown 62.99 156 31.75 3.00 +chr2 27799393 27799393 A T het 49.44 70 39.79 0.92 +chr2 27855596 27855596 A T het 329.58 131 30.71 2.52 +chr2 27892053 27892053 T C het 69.43 81 20.83 0.86 +chr2 28635365 28635365 C G het 36.21 64 24.76 0.72 +chr2 28754968 28754968 T G unknown 43.37 187 40.69 0.77 +chr2 28888161 28888161 G A unknown 69.23 15 14.82 5.33 +chr2 29045242 29045242 A C het 85.40 43 32.65 2.31 +chr2 29237396 29237396 A T unknown 78 63 28.35 5.57 +chr2 29520025 29520025 T A unknown 44.31 45 24.31 3.16 +chr2 31010034 31010034 T C het 95.20 82 28.51 1.61 +chr2 31399821 31399821 A T hom 84.27 16 25.22 6.48 +chr2 31414807 31414807 C G hom 758.23 31 32.33 24.46 +chr2 31457745 31457745 C T het 214.30 38 22.68 5.64 +chr2 31600146 31600146 T C het 645.55 98 37.96 12.41 +chr2 31620593 31620593 T G het 220.71 156 36.48 1.41 +chr2 32264286 32264286 C - het 925.75 142 36.80 8.99 +chr2 32706268 32706268 T - het 48.90 40 24.45 1.25 +chr2 32707473 32707473 C A het 66.10 177 24.06 0.50 +chr2 32734871 32734871 A T het 287.59 148 25.49 1.94 +chr2 33746842 33746842 G C unknown 43.37 11 31.84 14.46 +chr2 33827136 33827136 C A het 41.99 20 23.82 2.33 +chr2 36744612 36744612 G C het 59.32 129 32.29 0.84 +chr2 36764607 36764607 C A unknown 36.25 70 30.11 1.58 +chr2 37129970 37129970 T A unknown 61.67 91 29.80 1.71 +chr2 37217701 37217701 A T het 390.58 65 32.46 6.01 +chr2 37306343 37306343 G A hom 1977 75 32.98 26.36 +chr2 37323427 37323427 A G unknown 65.02 96 13.24 1.35 +chr2 37341974 37341974 T A het 207.99 159 34.39 1.82 +chr2 37468949 37468949 G - unknown 182.51 65 21.46 3.80 +chr2 37495568 37495568 C A het 57.96 69 36.86 0.84 +chr2 37501647 37501647 C G het 54.14 199 37.56 1.29 +chr2 37580111 37580111 G A het 42.95 63 38.01 1.34 +chr2 37599896 37599896 A C unknown 1208.79 177 34.96 9.75 +chr2 38044489 38044489 A - hom 372.20 125 18.40 2.98 +chr2 38570375 38570375 C - het 138.75 57 20.07 2.43 +chr2 38893536 38893536 C T het 32.95 31 25.54 1.43 +chr2 39224346 39224346 G T het 67.45 79 24.11 0.88 +chr2 42047324 42047324 G A het 30.10 103 9.87 1.31 +chr2 42836775 42836775 C G unknown 87.01 157 32.11 1.50 +chr2 42949950 42949950 T A het 42.35 45 24.83 1.18 +chr2 43458071 43458071 A G unknown 274.99 239 37.27 5.39 +chr2 43712322 43712322 A C het 235.86 108 27.82 2.18 +chr2 43937521 43937521 A G het 339.58 120 34.18 2.83 +chr2 44053646 44053646 C G unknown 201.55 243 38.07 1.64 +chr2 44071639 44071639 C T unknown 1292.56 104 34.51 14.52 +chr2 44071743 44071743 A G unknown 1678.57 104 36.49 20.72 +chr2 44527133 44527133 A G het 398.92 196 34.10 2.28 +chr2 44617460 44617460 A G het 48.41 130 34.81 0.51 +chr2 46386298 46386298 C T unknown 36.01 9 15.68 6.00 +chr2 46602847 46602847 T C het 891.79 110 33.58 11.43 +chr2 47249239 47249239 A G hom 417.75 20 26.76 20.89 +chr2 47250600 47250600 G T het 202.85 60 32.17 4.23 +chr2 47601257 47601257 T C unknown 51.99 83 26.89 2.89 +chr2 47690408 47690408 A G het 135.03 61 32.74 7.50 +chr2 48600533 48600533 T A het 160.60 99 25.56 1.62 +chr2 48725610 48725610 C T hom 409.62 59 32.09 12.80 +chr2 48734576 48734576 G A het 233.61 49 23.36 4.77 +chr2 48869625 48869625 A C het 235.62 51 28.09 4.62 +chr2 48898798 48898798 T A hom 4477.01 125 36.55 35.82 +chr2 50149373 50149373 T G het 243.12 59 27.20 4.12 +chr2 51147104 51147104 G C unknown 64.87 60 30.95 1.51 +chr2 53897770 53897770 G T het 113.56 76 37.60 3.55 +chr2 53941745 53941745 T G het 223.59 131 26.48 1.71 +chr2 54128578 54128578 A T het 238.59 286 35.46 0.83 +chr2 54307051 54307051 A G unknown 413.83 34 30.73 16.55 +chr2 54482294 54482294 C G unknown 299.08 134 34.10 3.18 +chr2 54482964 54482964 C T unknown 1383.79 132 33.27 13.98 +chr2 54587213 54587213 A G unknown 86.64 47 27.50 2.99 +chr2 54826283 54826283 T A het 366.42 194 30.56 1.89 +chr2 54852078 54852078 A G unknown 75.54 155 36.26 0.63 +chr2 54855986 54855986 G C het 148.58 54 28.32 2.75 +chr2 54873430 54873433 GCCA - het 640.54 110 19.00 5.82 +chr2 54874113 54874113 G A unknown 50.25 12 15.35 4.19 +chr2 54874361 54874361 A C het 209.72 185 33.01 1.13 +chr2 54882291 54882291 C A het 745.58 91 35.19 8.19 +chr2 55186229 55186229 T C hom 780.59 38 33.91 20.54 +chr2 55186394 55186394 A C hom 2662.57 174 37.38 15.30 +chr2 55461980 55461980 A - het 118.03 42 18.43 4.54 +chr2 55471212 55471212 T G het 75.63 99 22.97 0.76 +chr2 55570769 55570769 A T unknown 36.07 65 27.03 1.50 +chr2 55844342 55844342 A C unknown 147.96 66 18.64 2.85 +chr2 55867938 55867938 A G het 372.32 22 25.85 16.92 +chr2 55873385 55873385 C G het 316.85 91 34.50 4.87 +chr2 55889062 55889062 G A hom 2021.14 77 31.51 26.25 +chr2 55906878 55906878 T C unknown 31.41 87 17.15 1.16 +chr2 57276048 57276048 A G het 165.29 52 31.89 11.02 +chr2 60995888 60995888 C A het 65.27 38 23.35 2.51 +chr2 61021889 61021889 A C het 127.91 143 32.53 0.89 +chr2 61175250 61175250 A T het 513.60 219 32.09 2.35 +chr2 61245248 61245248 A G het 149.93 103 29.50 1.46 +chr2 61417780 61417780 T G het 368.40 72 33.73 5.42 +chr2 61647901 61647901 A G het 75 84 35.23 4.69 +chr2 61717847 61717847 T G het 321.60 139 34.60 2.31 +chr2 61722519 61722519 - A het 200.22 35 26.43 5.72 +chr2 63282842 63282842 A C het 70.20 59 24.32 1.49 +chr2 63609017 63609017 A T hom 3143.54 124 32.04 25.35 +chr2 63664989 63664989 T G het 252.11 148 30.83 1.84 +chr2 67631129 67631129 G A unknown 299.14 100 40.02 10.32 +chr2 67631395 67631395 G A unknown 291.14 110 38.08 8.32 +chr2 68018119 68018119 G A unknown 50.01 7 21.65 10.00 +chr2 68765266 68765266 C G het 82.68 138 23.02 0.68 +chr2 69009513 69009513 - GA het 768.52 78 21.63 9.85 +chr2 69040500 69040500 G A hom 2508.56 174 35.54 19.60 +chr2 69093422 69093422 C T unknown 45.12 127 33.09 0.69 +chr2 69204671 69204671 A T het 468.99 161 36.39 13.03 +chr2 69555475 69555475 C T unknown 135.85 213 33.54 1.39 +chr2 69732778 69732778 G C unknown 87.56 265 33.88 0.73 +chr2 69746037 69746037 C A unknown 44.74 74 36.98 0.97 +chr2 70064649 70064649 A T het 222.59 43 27.33 5.18 +chr2 70488573 70488573 A G het 49.44 53 23.25 1.27 +chr2 71036190 71036190 A - het 960.75 121 33.53 11.72 +chr2 71038565 71038565 C T het 299.79 85 25.79 5.17 +chr2 71300516 71300516 T C het 1023.99 316 38.68 14.03 +chr2 71351369 71351369 G A het 85.63 65 23.09 1.50 +chr2 71351487 71351487 G A het 5319.01 221 33.03 24.07 +chr2 71360144 71360144 A C het 262.38 136 16.24 6.73 +chr2 71576228 71576228 A T het 228.83 163 27.23 1.76 +chr2 71591382 71591382 G C het 34.65 87 33.64 0.40 +chr2 71730476 71730476 T G het 307.79 156 35.31 2.61 +chr2 71755380 71755380 A G unknown 187.86 44 28.08 6.06 +chr2 71816602 71816602 G C het 663.82 38 29.14 17.47 +chr2 72362048 72362048 G C het 76.09 99 31.05 1.55 +chr2 73151570 73151570 T C unknown 33.22 9 22.47 11.07 +chr2 73307162 73307162 G A unknown 60.08 46 29.34 3.75 +chr2 73476913 73476913 T C het 67.49 158 36.68 0.57 +chr2 73477351 73477351 T C het 251.81 39 29.55 9.33 +chr2 74438406 74438406 A G het 485.37 64 26.57 8.09 +chr2 74659679 74659679 G C het 40 105 28.99 0.73 +chr2 74708888 74708888 A C unknown 97.23 72 27.89 4.63 +chr2 74710278 74710278 A T het 38.03 138 37.71 1.09 +chr2 75893160 75893160 T G het 191.59 124 35.40 1.55 +chr2 75919295 75919295 A G het 122.83 50 12.71 2.46 +chr2 75923413 75923413 T C het 2477.54 94 33.64 26.36 +chr2 75933830 75933830 T A het 1827.17 70 32.37 26.10 +chr2 79384875 79384875 T A het 42.63 97 36.87 0.97 +chr2 80809027 80809027 C G unknown 333.79 65 35.88 6.95 +chr2 84868982 84868982 G A het 83.47 33 21.59 2.78 +chr2 84880695 84880695 G A unknown 1393.79 184 34.79 10.25 +chr2 85489251 85489251 C A het 150.62 210 20.32 0.72 +chr2 85526097 85526097 A G het 31.74 57 34.67 0.96 +chr2 85552186 85552186 C A hom 236.28 43 18.09 5.49 +chr2 85573033 85573033 G A hom 2397.54 97 31.94 24.72 +chr2 85780603 85780603 T C het 593.58 115 25.93 5.16 +chr2 85783317 85783317 C T het 41 130 35.93 1.14 +chr2 86000096 86000096 C T het 98.31 109 32.90 0.90 +chr2 86302197 86302197 G A unknown 51.75 46 29.80 1.40 +chr2 87042825 87042825 T C unknown 2279.79 235 36.75 12.88 +chr2 87240308 87240308 C T hom 36.67 12 18.24 7.33 +chr2 88423915 88423915 G A het 35.30 42 20.84 1.41 +chr2 88424066 88424066 T C unknown 1625.56 138 36.45 15.63 +chr2 88478437 88478437 T G het 147.60 315 34.80 0.47 +chr2 89104985 89104985 G A unknown 94.93 98 10.42 1.22 +chr2 89399594 89399594 C G het 148.65 132 12.80 1.13 +chr2 90249180 90249180 T C het 64.86 354 6.86 0.35 +chr2 91790825 91790825 C A het 64.96 148 12.43 0.48 +chr2 91843429 91843429 G C unknown 39.62 184 10.72 0.41 +chr2 92222609 92222609 T G unknown 80.01 39 18.40 2.86 +chr2 92305748 92305748 A G hom 485.40 22 25.68 23.11 +chr2 95766599 95766599 C T het 76.30 55 23.36 2.46 +chr2 95847047 95847047 G A unknown 44.89 175 31.56 1.12 +chr2 95943090 95943090 A T het 40.20 52 27.15 1.68 +chr2 95946917 95946917 A - het 199 47 20.93 4.23 +chr2 95950790 95950790 C G het 50.24 26 21.33 2.64 +chr2 96072966 96072966 C A hom 140.30 12 24.45 11.69 +chr2 96072981 96072981 T G hom 123.70 28 22.16 5.38 +chr2 96213318 96213318 G A unknown 30.58 151 18.46 0.49 +chr2 96781677 96781677 G A unknown 51.50 48 21.46 1.91 +chr2 96795944 96795944 A G het 919.58 84 34.11 10.95 +chr2 96933513 96933513 G A unknown 92.95 102 29.03 1.29 +chr2 96952492 96952492 A T het 278.73 220 36.46 2.40 +chr2 97214947 97214947 A C het 242.59 87 26.70 2.79 +chr2 97483137 97483137 G A unknown 54.55 121 32.00 0.85 +chr2 97613616 97613616 T C hom 592.72 38 35.10 15.60 +chr2 97712339 97712339 C A hom 517.28 136 10.57 3.80 +chr2 97818188 97818188 T C het 281.78 91 9.65 3.10 +chr2 97909702 97909702 C A het 1580.58 123 22.32 12.85 +chr2 97911395 97911395 A G het 408.61 66 21.27 6.19 +chr2 98175558 98175558 T C unknown 41.38 75 10.76 0.80 +chr2 98709549 98709549 T G unknown 37.42 65 28.93 1.25 +chr2 98833594 98833594 C T hom 223.89 18 22.73 12.44 +chr2 99152115 99152115 A G het 621.58 117 28.92 5.31 +chr2 99155932 99155932 A T het 127.60 88 21.31 1.45 +chr2 99162943 99162943 C T het 80.60 57 23.43 2.01 +chr2 99279512 99279512 T G unknown 41.99 292 35.04 1.24 +chr2 99858866 99858866 G C unknown 142.55 253 35.05 1.36 +chr2 99976564 99976564 A G hom 275.27 9 31.54 30.59 +chr2 100007112 100007112 G C het 372.80 190 35.02 2.41 +chr2 100035414 100035414 T A het 40.59 100 25.54 0.70 +chr2 100176775 100176775 A G het 469.99 117 39.71 18.80 +chr2 100360637 100360637 T G het 120.93 42 22.50 3.56 +chr2 100915772 100915772 A G het 538.55 115 32.49 8.29 +chr2 101185547 101185547 T A hom 32.27 57 11.52 0.81 +chr2 101627852 101627852 C T het 1071.63 91 23.78 11.78 +chr2 101646144 101646144 G A het 4912.01 196 30.86 25.06 +chr2 101874442 101874442 C T het 662.55 132 40.26 10.19 +chr2 101902561 101902561 G T unknown 34.19 134 37.19 1.90 +chr2 102038689 102038689 G A het 92.88 74 25.00 1.57 +chr2 102407315 102407315 T C unknown 108.23 55 30.01 2.78 +chr2 102487933 102487933 A G unknown 39.12 85 25.69 0.58 +chr2 103040249 103040249 C G het 91.60 58 36.10 3.16 +chr2 103321082 103321082 A T het 179.69 117 27.24 1.54 +chr2 103321087 103321087 T C het 420.58 127 28.77 3.31 +chr2 105388360 105388360 T A unknown 50.35 98 11.33 2.52 +chr2 105473032 105473032 T A het 55.99 104 15.49 0.78 +chr2 108475958 108475958 A G unknown 58.22 154 4.22 0.84 +chr2 108487898 108487898 G A hom 36.29 79 10.06 0.65 +chr2 108868736 108868736 G A unknown 178.83 23 35.98 11.92 +chr2 108875093 108875093 T A het 219.99 86 39.05 10.48 +chr2 108938813 108938813 T G het 218.80 69 33.57 4.47 +chr2 109328942 109328942 G A unknown 47.25 112 15.44 0.52 +chr2 109522720 109522720 G A hom 787.58 65 24.93 12.12 +chr2 110922067 110922067 A T het 32.27 65 21.89 0.57 +chr2 110941780 110941780 G T unknown 74.60 42 28.30 4.14 +chr2 111875352 111875352 G T hom 82.20 21 19.44 3.91 +chr2 112834907 112834907 T A het 145.28 57 21.72 2.74 +chr2 112945188 112945188 T A het 877.57 63 25.35 13.93 +chr2 113082463 113082463 A C het 74.30 110 24.51 0.87 +chr2 113416320 113416320 T C het 55.91 38 21.05 1.60 +chr2 113480814 113480814 C T het 267.58 71 32.40 3.77 +chr2 113482779 113482779 A C hom 99.35 24 12.69 4.73 +chr2 113739023 113739023 C G het 124.91 27 25.63 4.63 +chr2 113875522 113875522 T A het 600.58 131 38.16 4.58 +chr2 113875565 113875565 A G het 1439.79 207 34.14 9.60 +chr2 113953242 113953242 A C unknown 131.79 143 32.50 1.23 +chr2 113977706 113977706 G C het 43.75 41 26.26 2.19 +chr2 113999603 113999603 T A het 189.58 42 31.97 4.51 +chr2 114399145 114399145 G A hom 204.20 106 11.14 1.93 +chr2 114425685 114425685 G T het 227.66 40 17.55 5.69 +chr2 114475347 114475347 G C het 126.08 126 37.73 2.52 +chr2 114513386 114513386 C T het 1124.57 88 36.28 12.78 +chr2 114670740 114670740 G A het 41.23 77 28.81 0.82 +chr2 116497479 116497479 A G hom 4411.01 136 36.71 32.43 +chr2 116594221 116594221 G C het 1427.79 201 30.50 11.51 +chr2 118582936 118582936 - G unknown 2297.37 57 28.32 40.30 +chr2 119729008 119729008 T C het 36.56 124 30.43 0.39 +chr2 120204500 120204500 C G het 33.78 58 18.64 1.21 +chr2 120221861 120221861 G A het 322.79 63 34.75 7.34 +chr2 120388412 120388412 G A unknown 5658.01 241 35.90 23.48 +chr2 121729686 121729686 T C het 647.63 41 30.74 15.80 +chr2 121747406 121747406 G A hom 297.02 29 21.90 10.24 +chr2 122165196 122165196 A C unknown 71.15 291 31.74 0.83 +chr2 122216663 122216663 G A het 737.99 131 41.33 15.37 +chr2 122286442 122286442 A G het 475.99 172 41.76 10.58 +chr2 122484976 122484976 G A het 45.47 40 19.25 3.25 +chr2 127827545 127827545 G A het 59.63 57 27.62 1.61 +chr2 128007686 128007686 A C hom 143.67 22 20.62 9.58 +chr2 128017113 128017113 A C unknown 124.96 118 32.23 1.47 +chr2 128044367 128044367 T G het 782.58 201 31.08 3.89 +chr2 128046548 128046548 C A hom 388.24 20 30.88 21.57 +chr2 128327479 128327479 C T het 124.80 61 25.34 2.77 +chr2 128345960 128345960 T C het 435.79 79 33.59 6.92 +chr2 128375709 128375709 A T het 47.04 72 19.34 0.89 +chr2 128385535 128385535 T C het 90.58 89 36.16 2.38 +chr2 128393289 128393289 T C het 147.64 47 32.06 6.71 +chr2 128396819 128396819 G A het 98.83 95 24.90 1.04 +chr2 128408384 128408384 G C het 274.58 128 28.18 2.15 +chr2 128408955 128408955 A G het 48.98 130 32.59 0.49 +chr2 128477084 128477084 G C het 217.55 79 32.85 4.83 +chr2 128480046 128480046 A C het 66.56 88 37.87 1.62 +chr2 128699750 128699750 G C hom 1252.58 94 34.54 13.33 +chr2 128747392 128747392 C A unknown 72.72 122 34.72 1.04 +chr2 128867343 128867343 T G het 142.80 106 35.80 1.98 +chr2 130949606 130949607 AT - het 213.79 118 8.85 2.85 +chr2 131003683 131003683 C T het 41.92 51 21.29 1.50 +chr2 131003687 131003687 C G het 92.74 54 21.85 3.20 +chr2 131486627 131486627 G T het 811.60 92 31.15 8.82 +chr2 131521016 131521016 G A het 57.35 65 25.32 1.69 +chr2 131890676 131890676 T G unknown 51.99 72 33.04 2.74 +chr2 132093226 132093226 C A het 63.54 97 20.79 1.08 +chr2 132359034 132359034 A G het 74.66 82 10.73 1.04 +chr2 132384395 132384395 C G hom 86.82 98 14.20 1.21 +chr2 132580379 132580379 G A unknown 63.29 21 16.84 3.72 +chr2 133012085 133012085 A G unknown 139.09 55 12.50 3.66 +chr2 133014432 133014432 C T unknown 40.34 18 13.32 5.76 +chr2 133016872 133016872 A G hom 37.01 45 7.41 1.28 +chr2 133019039 133019039 T G het 1129.57 495 11.60 2.28 +chr2 133019329 133019329 A G het 46.87 205 10.93 0.43 +chr2 133020402 133020402 T G het 573.04 119 14.97 4.82 +chr2 133020597 133020597 - A het 386.32 142 12.34 2.72 +chr2 133033445 133033445 A G hom 103.55 25 12.47 4.14 +chr2 133070318 133070318 A C het 382.99 45 26.54 8.51 +chr2 133541444 133541444 T C hom 4384.01 167 33.63 26.25 +chr2 135011985 135011985 T C het 46.25 73 29.71 0.76 +chr2 135012227 135012227 T G het 53.67 134 37.12 0.88 +chr2 135012257 135012257 G T unknown 193.90 112 34.37 2.13 +chr2 135076090 135076090 C T hom 1935 76 31.06 25.46 +chr2 135710415 135710415 T C unknown 100.01 214 37.24 1.37 +chr2 135744869 135744869 C G het 134.64 212 39.39 1.66 +chr2 135815814 135815814 C A het 202.52 81 33.83 2.63 +chr2 136071270 136071270 C A het 65.43 39 24.60 1.87 +chr2 136379215 136379215 T A hom 93.28 32 16.38 4.24 +chr2 136513282 136513282 T G het 202.70 107 33.23 1.89 +chr2 136540291 136540291 T C het 498.60 244 27.85 2.04 +chr2 136545844 136545844 C G hom 7558.01 237 36.00 31.89 +chr2 136552136 136552136 C G het 130.01 62 27.25 2.10 +chr2 136565919 136565919 T A het 1045.58 115 35.49 9.09 +chr2 136566691 136566691 A G het 392.58 111 25.22 3.54 +chr2 136655828 136655828 G A unknown 34.15 32 25.36 1.26 +chr2 137872771 137872771 T G het 359.58 123 27.71 2.92 +chr2 138000226 138000226 T C hom 2811.28 113 29.68 24.88 +chr2 138030271 138030271 G A hom 3583.01 124 30.58 28.90 +chr2 141242882 141242882 A T het 293.80 72 34.17 6.00 +chr2 141260507 141260507 T C hom 1143.56 115 37.21 15.67 +chr2 141260668 141260668 A G hom 1892.56 143 36.22 18.74 +chr2 141441382 141441382 A G hom 4036.01 129 35.38 31.29 +chr2 141819714 141819714 T A het 434.58 180 33.52 2.41 +chr2 144276967 144276967 T C het 43.29 68 31.22 0.82 +chr2 144699739 144699739 C T het 396.07 71 34.97 18.00 +chr2 148684653 148684653 T G het 206.94 85 28.71 3.28 +chr2 149053901 149053901 C T unknown 93.11 10 18.19 15.52 +chr2 149221457 149221457 T A het 536.58 121 31.04 4.43 +chr2 149240658 149240658 T - het 176.39 104 21.60 1.70 +chr2 152267072 152267072 T G hom 609.58 58 31.24 17.93 +chr2 152325143 152325143 A G unknown 64.99 204 27.43 3.61 +chr2 152364589 152364589 G A het 1191.79 166 34.67 11.68 +chr2 152388228 152388228 G C hom 1902.54 83 32.20 22.92 +chr2 152418660 152418660 G C het 296.95 416 35.49 0.93 +chr2 152466728 152466728 T C unknown 334.80 55 31.03 9.05 +chr2 152554080 152554080 A G het 401.58 132 26.96 3.04 +chr2 152581280 152581280 G T unknown 78.56 173 30.41 0.97 +chr2 153000337 153000337 T A het 244.60 76 34.59 4.99 +chr2 153399320 153399320 C G het 471.58 151 27.36 3.12 +chr2 153488632 153488632 T G het 215.79 261 34.95 1.19 +chr2 154278215 154278215 A T unknown 63.47 65 21.80 1.48 +chr2 155098787 155098787 T A het 91.94 40 27.84 2.30 +chr2 155143185 155143185 T C het 36.33 25 22.96 1.91 +chr2 155555344 155555344 C G unknown 126.82 83 26.00 1.95 +chr2 157425342 157425342 A T unknown 56.71 272 35.27 1.11 +chr2 158165818 158165818 T C hom 36.02 4 23.62 18.01 +chr2 158167747 158167747 C T het 176.63 150 30.59 3.27 +chr2 158390345 158390345 A G het 252.77 66 27.29 3.83 +chr2 158991441 158991441 T A het 337.40 122 32.11 3.59 +chr2 159433921 159433921 A G het 147.66 65 29.57 2.27 +chr2 160035741 160035741 A G unknown 1169.79 118 42.67 13.76 +chr2 160084534 160084534 A G hom 1551.59 114 33.60 13.61 +chr2 160176943 160176943 A C hom 1516 58 30.31 26.14 +chr2 160335001 160335001 A T het 473.59 60 24.90 7.89 +chr2 160637324 160637324 A G unknown 1086.56 107 34.59 15.75 +chr2 160824015 160824015 G C unknown 41.01 131 32.14 0.91 +chr2 160862094 160862094 G A het 85.62 67 32.49 2.59 +chr2 162274253 162274253 T C het 58.29 180 35.79 0.46 +chr2 162903957 162903957 T G unknown 42.61 90 29.43 1.25 +chr2 163695036 163695036 C T unknown 31.68 34 23.72 1.02 +chr2 165551245 165551245 T A het 90.88 83 28.80 1.09 +chr2 165557226 165557226 T C het 239.79 146 33.42 2.61 +chr2 165796128 165796128 A T het 112.17 118 36.41 1.42 +chr2 165954075 165954075 T G het 279.49 172 35.42 2.47 +chr2 166769167 166769167 A T het 31.59 167 34.55 0.46 +chr2 167128845 167128845 G T unknown 31.99 140 33.07 2.13 +chr2 168074781 168074781 C G het 35.61 153 33.64 0.61 +chr2 168986154 168986154 A G hom 2731.56 248 35.60 16.46 +chr2 169574390 169574390 A T het 36.95 66 31.44 1.48 +chr2 169745987 169745987 C T het 346.58 88 30.17 3.94 +chr2 169869750 169869750 A T het 83.77 226 31.89 0.92 +chr2 169996016 169996016 G T het 388.58 185 37.43 2.10 +chr2 170011029 170011029 T C unknown 68.82 212 37.98 0.56 +chr2 170060504 170060504 T C het 336.64 152 30.36 2.21 +chr2 170343637 170343637 C A het 294.58 148 31.76 1.99 +chr2 170360765 170360765 G C het 295 107 38.37 10.93 +chr2 170393704 170393704 T G unknown 62.48 117 32.98 4.81 +chr2 170403268 170403268 G A het 54.92 94 25.80 0.76 +chr2 170488454 170488454 A G het 396.43 41 28.06 10.71 +chr2 170782037 170782037 C T hom 749.58 35 26.52 21.42 +chr2 170934584 170934584 C T hom 40.22 112 7.02 0.72 +chr2 171608758 171608758 T A unknown 41.81 85 18.63 0.95 +chr2 171704335 171704335 G T unknown 50.14 195 37.02 0.60 +chr2 171854345 171854345 G C het 2128.65 213 28.09 9.99 +chr2 172186996 172186996 C A het 87.95 91 33.34 1.49 +chr2 172926211 172926211 T G het 637.99 162 38.13 14.84 +chr2 172943884 172943884 T - unknown 128.78 46 21.02 4.29 +chr2 173339808 173339808 G A het 1572.80 76 36.54 20.69 +chr2 173352009 173352009 A C het 35.67 111 30.04 0.87 +chr2 174081849 174081849 A C unknown 53.09 141 41.41 1.47 +chr2 174086285 174086285 C T het 42.37 15 29.59 6.05 +chr2 174485398 174485398 T A unknown 85.22 12 18.63 9.47 +chr2 175304848 175304848 C A het 109.40 34 27.28 5.21 +chr2 175622695 175622695 C G het 164.13 85 27.61 1.93 +chr2 175712415 175712415 A C het 445.58 76 30.38 5.86 +chr2 176195192 176195192 A C het 42.25 9 21.55 6.04 +chr2 177247978 177247978 T C het 65.06 82 32.34 1.20 +chr2 178149959 178149959 G A het 2234.80 113 34.49 19.78 +chr2 178883104 178883104 A G het 44 88 26.74 2.00 +chr2 178985157 178985157 T A het 130.48 89 34.09 1.59 +chr2 178990942 178990943 AT - het 1656.53 74 30.11 22.39 +chr2 179403593 179403593 G A unknown 291.99 184 32.94 6.08 +chr2 179431836 179431836 A C unknown 94.99 343 37.39 1.98 +chr2 179446945 179446945 T C unknown 122.79 275 35.01 0.65 +chr2 179449050 179449050 C G het 85.31 139 23.48 0.78 +chr2 179463937 179463937 G C het 389.72 296 27.31 1.32 +chr2 179499577 179499577 C T unknown 49.81 196 33.33 0.59 +chr2 179514343 179514343 T G het 468.58 172 31.51 2.72 +chr2 179539043 179539043 C A het 233.64 142 32.81 1.65 +chr2 179553542 179553542 G T unknown 331.73 77 25.87 7.21 +chr2 179575553 179575553 T A het 717.58 211 34.84 3.40 +chr2 179594039 179594039 A G unknown 40.99 335 34.87 0.77 +chr2 179594048 179594048 T G unknown 120.79 311 34.08 0.94 +chr2 179611711 179611711 C A unknown 302.99 209 32.77 5.41 +chr2 179611794 179611794 C T het 332.79 272 29.41 1.66 +chr2 179647546 179647546 A G unknown 77.99 90 35.10 3.90 +chr2 179656848 179656848 C T het 166.44 101 27.71 1.79 +chr2 179714765 179714765 G T unknown 94.99 76 25.22 1.73 +chr2 179839803 179839803 A G het 289.12 112 30.59 2.58 +chr2 180835792 180835792 T A hom 5233.01 153 37.20 34.20 +chr2 182413602 182413602 A T hom 1493.57 129 38.71 11.58 +chr2 182784162 182784162 T A het 125.17 136 32.70 1.15 +chr2 183070851 183070851 A G het 447.45 37 27.71 12.09 +chr2 183106758 183106758 T G hom 1841.06 61 35.74 30.18 +chr2 183584762 183584762 T A het 209.79 136 29.32 1.54 +chr2 183616694 183616694 G C het 965.41 63 25.97 15.32 +chr2 183623784 183623784 C T het 80.83 26 37.68 4.75 +chr2 186625880 186625880 C G het 170.07 65 31.15 11.34 +chr2 186669157 186669157 A T unknown 43.49 188 34.17 0.72 +chr2 187370594 187370594 T G unknown 160.40 70 28.26 2.77 +chr2 187370673 187370673 G C het 70.69 11 32.96 8.84 +chr2 189899572 189899572 T C hom 977.29 44 25.45 22.21 +chr2 189929354 189929354 C T het 46.62 94 21.59 0.50 +chr2 190430387 190430387 T G het 636.65 98 32.56 6.50 +chr2 190795009 190795009 A C het 45.51 36 27.06 1.26 +chr2 191364708 191364708 G A unknown 971.79 164 37.14 9.26 +chr2 191905778 191905778 T G het 601.83 123 31.61 4.89 +chr2 192160875 192160875 C T unknown 1102.99 273 37.30 13.96 +chr2 192250726 192250726 G A hom 8275.01 270 33.33 30.65 +chr2 192280936 192280936 C G het 95.88 160 30.37 0.86 +chr2 192746052 192746052 T A het 43.77 89 32.38 0.49 +chr2 194855686 194855686 C A unknown 35.54 102 23.17 0.59 +chr2 195052367 195052367 C A hom 31.02 89 7.52 0.82 +chr2 196640516 196640516 C A het 161.81 127 28.38 1.48 +chr2 197118597 197118597 A T het 33.52 65 26.89 1.02 +chr2 197172816 197172816 G A het 188.59 30 24.52 6.29 +chr2 197597443 197597443 T C het 203.16 41 27.94 20.32 +chr2 197636559 197636559 A G unknown 74.83 132 36.61 0.81 +chr2 197791009 197791009 C A het 52.05 40 21.99 1.63 +chr2 198263146 198263146 T C het 471.99 187 36.17 8.91 +chr2 198498542 198498542 T C het 63.69 146 32.30 1.16 +chr2 198571965 198571965 T A het 161.11 87 25.35 2.07 +chr2 200173684 200173684 T G hom 2466.98 78 32.26 31.63 +chr2 200804913 200804913 A T het 215.21 89 24.21 3.07 +chr2 201473816 201473816 G A unknown 55.26 124 31.76 1.02 +chr2 201474078 201474078 A C het 350.79 96 23.31 3.65 +chr2 201478566 201478566 T C het 82.34 97 24.80 0.85 +chr2 201677900 201677900 T G het 98.60 95 26.71 2.01 +chr2 201741670 201741670 A C het 514.69 112 35.33 4.60 +chr2 201758156 201758156 T G unknown 70.87 95 31.79 1.06 +chr2 201943539 201943539 T A het 226.59 76 26.01 2.98 +chr2 202141529 202141529 G A het 201.64 116 24.21 1.74 +chr2 202208805 202208805 G A het 58.62 32 25.19 3.66 +chr2 202211467 202211467 T A unknown 30.86 141 34.14 0.51 +chr2 202245244 202245244 A G hom 813.57 56 36.74 14.53 +chr2 202357949 202357949 A C hom 3059 101 32.09 30.29 +chr2 202483802 202483802 - G het 635.54 98 29.54 6.49 +chr2 202507274 202507274 G A het 46.04 81 28.58 0.78 +chr2 202514243 202514243 A C het 94.10 120 29.56 0.78 +chr2 202591157 202591157 C T het 102 117 39.84 3.09 +chr2 202593280 202593280 G A het 689.99 215 32.76 13.27 +chr2 202755554 202755554 G C unknown 144.29 103 35.45 1.92 +chr2 202899979 202899979 T C unknown 39.97 10 27.15 13.32 +chr2 202939654 202939654 T C het 2769.57 172 36.42 16.10 +chr2 203147115 203147115 A T unknown 93.99 206 35.65 3.03 +chr2 203164957 203164957 T G het 89.82 135 29.22 1.00 +chr2 203705380 203705380 C G het 60.21 136 19.86 0.62 +chr2 203831801 203831801 C T het 50.99 206 33.84 0.81 +chr2 203880992 203880992 T C hom 1761.02 53 33.82 33.23 +chr2 204003295 204003295 T G het 52.95 52 24.54 1.02 +chr2 204016157 204016157 A T het 71.07 45 30.02 1.73 +chr2 204082094 204082094 C A het 186.49 157 37.10 1.67 +chr2 204090887 204090887 C G hom 3058.08 94 35.34 32.53 +chr2 204111629 204111629 A C het 869.58 262 35.33 3.32 +chr2 204732714 204732714 A G het 155.29 87 30.33 3.38 +chr2 204737483 204737483 C A unknown 62 148 36.15 3.26 +chr2 206057854 206057854 A C hom 291.71 57 18.00 5.12 +chr2 206165361 206165361 C T unknown 31.99 289 29.87 0.50 +chr2 206418032 206418032 G A hom 4106.01 128 35.14 32.08 +chr2 206480256 206480256 T G het 890.58 206 36.94 4.32 +chr2 207008675 207008675 C T het 184.79 98 33.95 2.76 +chr2 207172627 207172627 A G het 5826.01 291 34.80 20.02 +chr2 207175571 207175571 T A het 103.85 314 32.28 0.44 +chr2 207603234 207603234 T G het 61.07 73 36.28 3.39 +chr2 207610900 207610900 G A unknown 51.04 36 25.67 2.43 +chr2 207814484 207814484 T C het 939.58 93 30.35 10.10 +chr2 208174754 208174754 G A unknown 39.99 85 41.22 2.22 +chr2 209010516 209010516 G T het 62.73 101 25.40 0.62 +chr2 209010544 209010544 C G het 169.60 89 18.90 1.91 +chr2 209010785 209010785 T G het 203.58 112 33.97 1.82 +chr2 209116364 209116364 T A het 30.41 30 21.81 3.38 +chr2 209271884 209271884 T G hom 245.18 41 24.64 7.66 +chr2 210043385 210043385 C A unknown 128.31 133 26.75 1.34 +chr2 210043884 210043884 A C het 209.93 168 17.67 1.59 +chr2 210517785 210517785 C T hom 1199.29 36 36.52 33.31 +chr2 210642087 210642087 C T het 1576.79 189 35.89 11.59 +chr2 210786137 210786137 G A hom 976.10 36 39.06 27.11 +chr2 210841694 210841694 G T het 47.57 102 31.41 1.06 +chr2 211471545 211471545 T G unknown 39.45 233 35.67 0.67 +chr2 211539650 211539650 G A unknown 683.79 98 32.79 9.63 +chr2 212251795 212251795 A G het 435.58 293 33.95 1.49 +chr2 212530136 212530136 C G het 512.58 167 33.98 3.07 +chr2 212989308 212989308 T C hom 125.67 5 33.40 25.13 +chr2 215839638 215839638 C G het 82.28 71 29.54 1.16 +chr2 215851246 215851246 A G hom 2516.98 72 37.06 34.96 +chr2 215884441 215884441 G T het 104.93 148 33.91 0.98 +chr2 215914248 215914248 G T het 33.12 49 32.99 0.92 +chr2 216183025 216183025 C T het 52.51 83 28.82 0.82 +chr2 216190020 216190020 C G het 456.55 138 30.66 6.25 +chr2 216214492 216214492 T G het 144.20 89 35.98 2.44 +chr2 216230390 216230390 T C het 640.79 67 32.35 12.09 +chr2 216269249 216269249 G T het 274.62 186 31.64 1.48 +chr2 216286967 216286967 C G unknown 95.99 221 37.20 2.23 +chr2 216299281 216299281 A C het 55.28 23 34.49 9.21 +chr2 217012968 217012968 C G het 574.58 117 27.74 4.91 +chr2 217280876 217280876 T C unknown 413.79 69 33.85 9.40 +chr2 217332785 217332785 A C het 252.62 81 29.07 3.12 +chr2 217542753 217542753 A T unknown 42.48 65 28.75 0.75 +chr2 218705948 218705948 T C unknown 296.58 33 30.63 11.86 +chr2 218749752 218749752 G C het 82.72 114 29.48 1.45 +chr2 219028932 219028932 G A unknown 489.99 188 39.01 9.80 +chr2 219093571 219093571 G A het 76.90 69 38.15 1.92 +chr2 219134853 219134853 C G het 142.94 148 30.29 1.44 +chr2 219146803 219146803 G A unknown 61.22 13 18.26 5.57 +chr2 219154781 219154781 G A unknown 40.77 5 20.66 10.19 +chr2 219219072 219219072 C T unknown 101.99 112 25.86 3.78 +chr2 219229492 219229492 G T het 108.60 77 27.95 1.41 +chr2 219259485 219259485 T A het 200.65 98 26.13 2.05 +chr2 219288899 219288899 C T het 123.99 47 32.21 10.33 +chr2 219501280 219501280 C T het 98.85 79 25.61 1.65 +chr2 219508372 219508372 A T het 701.99 266 28.28 11.32 +chr2 219528936 219528937 GG - het 355.79 115 19.29 4.24 +chr2 219617782 219617782 A G unknown 48.93 166 25.64 0.40 +chr2 219617790 219617790 A C unknown 54.56 162 25.83 0.68 +chr2 219647108 219647108 T G het 119.84 59 33.57 3.00 +chr2 219692527 219692527 - C hom 781.34 26 30.29 30.05 +chr2 219696158 219696158 C G unknown 79.04 22 22.85 4.65 +chr2 219895944 219895944 G T het 112.64 37 25.89 3.04 +chr2 220044888 220044888 G C het 267.58 242 31.45 1.11 +chr2 220044899 220044899 G C het 70.02 208 31.76 1.56 +chr2 220045979 220045979 T G het 482.58 131 32.14 3.68 +chr2 220046823 220046823 C T het 637.58 261 32.27 2.44 +chr2 220086951 220086951 T C het 270.91 75 22.59 3.61 +chr2 220111636 220111636 G C het 31.28 68 36.83 0.58 +chr2 220167123 220167123 A C unknown 30.51 31 25.29 1.13 +chr2 220172605 220172605 A T unknown 41.99 127 31.11 1.27 +chr2 220195446 220195446 C G het 334.79 51 31.05 8.81 +chr2 220246162 220246162 G A het 767.58 271 25.72 2.83 +chr2 220251178 220251178 T C hom 3353.01 106 33.09 31.63 +chr2 220332142 220332142 T A unknown 35.99 86 36.96 2.00 +chr2 220356611 220356611 C G het 57.53 37 23.50 1.92 +chr2 220402477 220402477 T C unknown 83.55 36 29.51 2.70 +chr2 220406944 220406944 G A hom 122.67 5 32.71 24.53 +chr2 220435034 220435034 A G hom 354.84 21 27.79 16.90 +chr2 220466199 220466199 G T hom 1576.04 65 28.30 24.25 +chr2 220473355 220473355 G A het 902.58 75 32.22 12.03 +chr2 222301357 222301357 T C het 4206.01 140 36.28 30.04 +chr2 223793480 223793480 C T het 750.83 35 32.82 21.45 +chr2 224263028 224263028 A G het 390.72 74 22.51 7.97 +chr2 224569811 224569811 G A het 793.79 120 28.06 9.12 +chr2 224842381 224842381 C G het 447.58 107 30.00 4.18 +chr2 225664780 225664780 A T het 36.12 52 15.46 2.41 +chr2 225738666 225738666 T G het 509.58 224 34.45 2.27 +chr2 225740730 225740730 G A het 146.19 158 31.08 1.16 +chr2 227912236 227912236 C A het 161.22 99 27.41 2.12 +chr2 227968636 227968636 A C het 591.59 68 34.94 8.70 +chr2 227974122 227974122 T G het 178.60 76 29.51 2.35 +chr2 228111444 228111444 C G het 105.58 155 29.98 1.21 +chr2 228135554 228135554 G T het 41.55 143 29.84 0.74 +chr2 229890660 229890660 A G het 3156.78 145 34.66 21.77 +chr2 230723604 230723604 C A unknown 109.01 184 31.21 1.98 +chr2 230744828 230744828 C G het 758.58 159 29.44 4.77 +chr2 231042276 231042276 A G het 5092.01 281 39.02 18.12 +chr2 231256747 231256747 A C unknown 40.10 100 24.07 1.54 +chr2 231333767 231333767 C A het 249.58 124 33.53 2.01 +chr2 231738263 231738263 C T unknown 35.99 117 32.59 2.40 +chr2 232220469 232220469 G C het 132.69 50 39.00 3.32 +chr2 232262384 232262384 A C het 163.58 58 20.84 2.82 +chr2 232325692 232325692 A C het 69.60 23 37.91 9.94 +chr2 232393223 232393223 C G het 35.61 53 27.61 1.19 +chr2 232673388 232673388 T G het 114 28 20.91 4.75 +chr2 233208534 233208534 T C unknown 103.53 21 33.41 6.47 +chr2 233282973 233282973 T A hom 69.04 29 17.13 2.38 +chr2 233347024 233347024 G A het 40.17 44 17.90 1.12 +chr2 233398939 233398939 C G unknown 78.99 102 31.39 3.76 +chr2 233408292 233408292 C A het 199.70 63 27.47 3.17 +chr2 233656217 233656217 A T het 61.41 51 27.82 1.46 +chr2 233756193 233756193 C T het 105.70 74 24.83 1.43 +chr2 233998735 233998735 A C unknown 33.30 34 27.27 2.22 +chr2 234092995 234092995 T C unknown 48.99 186 35.71 1.26 +chr2 234093067 234093067 T C het 434.58 316 32.02 1.38 +chr2 234107070 234107070 G A het 597.77 69 23.39 8.66 +chr2 234172766 234172766 T C het 406.61 187 32.33 2.17 +chr2 234181593 234181593 G C unknown 1758.58 143 38.31 17.41 +chr2 234182447 234182447 T A het 210.65 112 30.19 1.88 +chr2 234184417 234184417 G A unknown 2280.56 225 33.27 14.43 +chr2 234197294 234197294 G C het 108.01 61 34.47 2.30 +chr2 234243755 234243755 C A het 67.31 71 19.91 0.95 +chr2 234247508 234247508 C G unknown 1037.79 124 37.94 11.93 +chr2 234343637 234343637 A T unknown 31.02 105 36.85 1.29 +chr2 234436080 234436080 T A het 44.14 216 29.91 0.38 +chr2 234469664 234469664 T C hom 888.91 82 31.22 10.84 +chr2 234630220 234630220 C G unknown 35.22 6 30.73 17.61 +chr2 234707460 234707460 G C unknown 79.60 20 28.62 6.12 +chr2 234713638 234713638 G C het 45.57 102 34.69 0.88 +chr2 234905031 234905031 C A het 77.04 176 32.93 0.61 +chr2 235943673 235943673 C A unknown 49.66 84 30.18 0.83 +chr2 236715998 236715998 C T het 51.54 68 22.51 0.94 +chr2 236817547 236817547 T G unknown 61.99 205 24.03 1.35 +chr2 236911466 236911466 C T unknown 44.77 9 16.75 11.19 +chr2 237246882 237246882 A C het 1193.58 283 37.41 4.22 +chr2 238257353 238257353 A G unknown 138.99 53 37.98 11.58 +chr2 238280861 238280861 C A het 213.77 75 25.30 2.85 +chr2 238283104 238283104 G A het 47.18 90 22.06 0.66 +chr2 238475826 238475826 C A het 415.58 41 29.36 10.14 +chr2 238484222 238484222 G A hom 77.92 23 28.49 12.99 +chr2 238925338 238925338 C A het 33.72 98 22.23 0.65 +chr2 238933910 238933910 G A het 52.55 99 33.67 0.80 +chr2 238991836 238991836 G T unknown 70.99 114 32.88 3.38 +chr2 239167288 239167288 G A het 64.57 92 30.76 1.27 +chr2 239463148 239463148 G A unknown 37.05 8 15.18 9.26 +chr2 239495554 239495554 G A unknown 42.77 7 18.51 10.69 +chr2 240098220 240098220 G A het 422.58 80 24.25 5.28 +chr2 240950954 240950954 A C het 68.41 39 27.36 2.21 +chr2 240982157 240982157 C G unknown 58.94 117 13.67 0.63 +chr2 241566012 241566012 G A het 279.93 22 37.80 14.00 +chr2 241700642 241700642 C A het 39.38 97 22.75 0.55 +chr2 241705159 241705159 T A het 54.34 78 31.24 0.70 +chr2 241797544 241797544 C T unknown 54.01 11 19.32 13.50 +chr2 241813496 241813496 C T het 2966.54 129 28.73 23.00 +chr2 241814511 241814511 C A het 278.16 54 18.81 5.15 +chr2 241885514 241885514 C A unknown 32.48 26 28.26 3.61 +chr2 242007255 242007255 G C unknown 178.56 120 32.78 1.96 +chr2 242035332 242035332 G T het 544.58 254 27.52 2.14 +chr2 242047566 242047566 T A het 248.90 331 34.30 1.52 +chr2 242078030 242078030 C A unknown 44.56 104 36.55 0.84 +chr2 242139491 242139491 C T het 989.75 47 28.71 21.06 +chr2 242157240 242157240 C T het 37.45 21 27.09 2.50 +chr2 242179134 242179134 G A unknown 486.99 138 35.93 12.17 +chr2 242192414 242192414 G C het 281.58 157 35.10 1.79 +chr2 242396268 242396268 C T het 319.67 67 24.25 4.77 +chr2 242429424 242429424 C G het 134.61 148 39.25 0.91 +chr2 242590318 242590318 A C het 85.64 55 32.50 1.56 +chr2 242598418 242598418 G A het 571.79 58 35.13 13.00 +chr2 242648545 242648545 C T het 2634.57 137 34.89 19.23 +chr3 391100 391100 A G hom 2914.98 106 29.71 27.50 +chr3 425465 425465 A C het 110.02 116 32.76 0.95 +chr3 431233 431233 T C het 142.48 35 29.88 4.60 +chr3 1415703 1415703 A C het 49.10 86 26.29 0.57 +chr3 1427162 1427162 G T het 79.24 20 31.55 4.40 +chr3 2777622 2777622 A G het 1640.58 210 31.41 7.81 +chr3 3118142 3118142 G T unknown 381.14 53 41.46 23.82 +chr3 4818792 4818792 T C het 910.58 56 33.99 16.26 +chr3 4927308 4927308 A G hom 1410.99 44 32.95 32.07 +chr3 5021741 5021741 C G het 50.48 65 33.69 1.05 +chr3 5214338 5214338 G T het 249.64 152 30.84 1.64 +chr3 7621015 7621015 T G het 110.84 47 32.40 3.26 +chr3 8671460 8671460 C G unknown 82.67 40 24.92 3.94 +chr3 8955400 8955400 A G het 96.42 71 26.00 1.61 +chr3 9390345 9390345 T C hom 1413.55 156 18.82 9.06 +chr3 9514856 9514856 G A unknown 166.99 136 40.27 5.76 +chr3 9725000 9725000 T A unknown 521.79 89 33.95 8.15 +chr3 9769084 9769084 G A het 35.48 98 27.92 0.44 +chr3 9776012 9776012 A C het 552.58 228 34.55 2.42 +chr3 9803140 9803140 C T unknown 32.18 132 37.40 0.35 +chr3 9882416 9882416 C A unknown 73.24 74 35.30 1.74 +chr3 9890464 9890464 A G het 42.45 41 9.87 2.12 +chr3 9908792 9908792 G T het 72.64 70 20.45 2.34 +chr3 9944725 9944725 C A het 32.75 109 30.09 1.56 +chr3 9953260 9953260 C A het 815.58 230 30.21 3.55 +chr3 9970003 9970003 C A het 41.94 88 29.91 0.61 +chr3 9972493 9972493 G A hom 751.16 26 32.26 28.89 +chr3 9974320 9974320 G C het 63.69 80 25.54 1.12 +chr3 10016003 10016003 A G het 137.66 85 34.01 2.26 +chr3 10258514 10258514 T C het 296.63 86 26.16 3.45 +chr3 10291287 10291287 T G het 56.88 85 31.58 0.80 +chr3 10302479 10302479 G A hom 343.92 15 26.65 24.57 +chr3 10311773 10311773 A G unknown 260.99 107 36.39 9.67 +chr3 10328453 10328453 T A unknown 152.99 96 33.43 6.12 +chr3 10331586 10331586 T G unknown 51.30 159 30.65 0.60 +chr3 11058839 11058839 G T het 73.87 34 25.08 2.17 +chr3 11224713 11224713 C G unknown 50.77 4 28.19 25.38 +chr3 11300707 11300707 T C hom 2615.03 98 33.22 26.68 +chr3 11920325 11920325 A C hom 532.16 97 17.55 5.49 +chr3 11926423 11926423 A G het 78.94 70 17.48 1.27 +chr3 12188466 12188466 T G unknown 35.28 107 17.35 0.68 +chr3 12299957 12299957 G T het 35.99 153 25.57 1.06 +chr3 12613519 12613519 G T het 79 21 22.90 4.16 +chr3 12641507 12641507 A C unknown 31.30 36 33.15 2.85 +chr3 12854708 12854708 C T het 30.32 57 21.15 0.74 +chr3 12881233 12881233 A G het 352.63 34 28.52 10.37 +chr3 12953051 12953051 C A het 60.25 108 32.68 1.21 +chr3 13376917 13376917 C T unknown 42.83 71 29.89 0.78 +chr3 14173963 14173963 G T het 438.58 73 33.85 6.01 +chr3 14176138 14176138 A C het 42.27 56 26.88 1.06 +chr3 14536385 14536385 C A het 170.59 87 25.16 1.96 +chr3 14548990 14548990 G C het 531.83 81 25.65 8.18 +chr3 14563258 14563258 A G unknown 434.65 21 31.69 24.15 +chr3 14566969 14566969 G A unknown 90.87 174 26.45 0.95 +chr3 14708918 14708918 A G hom 4150.01 123 33.46 33.74 +chr3 14862763 14862763 A T het 228.58 313 18.26 0.73 +chr3 15094853 15094853 G C het 256.58 80 22.35 3.21 +chr3 15301210 15301210 A C het 52.10 121 29.27 0.54 +chr3 15301363 15301363 G A unknown 2105.56 154 38.22 18.47 +chr3 15572955 15572955 A G hom 45.01 10 16.63 7.50 +chr3 15602335 15602335 A T het 91.67 96 29.99 3.16 +chr3 15727468 15727468 C G unknown 77.75 255 32.13 1.13 +chr3 16264037 16264037 T A het 1242.79 192 38.89 8.88 +chr3 17051328 17051328 T C hom 5121.01 139 38.87 36.84 +chr3 17051914 17051914 A T het 499.58 158 36.25 3.16 +chr3 17053363 17053363 T A unknown 262.09 165 31.15 3.16 +chr3 17226559 17226559 T C het 44.59 105 31.20 0.78 +chr3 17469973 17469973 A G het 151.70 72 32.42 2.11 +chr3 17919094 17919094 G C het 98.60 114 21.43 0.86 +chr3 18419859 18419859 G A hom 4566.01 148 31.58 30.85 +chr3 18427924 18427924 G T hom 3427.01 112 32.63 30.60 +chr3 19924181 19924181 G A het 535.58 215 38.44 2.49 +chr3 19992435 19992435 A C het 45.02 131 13.02 0.48 +chr3 20027221 20027221 A T unknown 32.99 400 36.96 1.50 +chr3 20143020 20143020 G C hom 2622.54 96 34.10 27.32 +chr3 20181753 20181753 T A het 64.57 143 34.06 0.73 +chr3 21706416 21706416 T G unknown 78.22 85 18.31 1.24 +chr3 24206720 24206720 C G het 931.58 422 38.00 2.21 +chr3 24231983 24231983 T G hom 31.77 8 16.79 7.94 +chr3 25366144 25366144 C G het 254.54 20 26.41 14.14 +chr3 25635888 25635888 A G het 420.58 101 34.88 4.16 +chr3 25642588 25642588 C T unknown 94.09 211 36.50 4.48 +chr3 25678750 25678750 T C het 46.94 30 27.39 2.76 +chr3 27216266 27216266 C G unknown 159.79 218 28.66 0.94 +chr3 27433237 27433237 T C unknown 59.80 44 25.91 2.39 +chr3 27478070 27478070 A T het 101.73 75 31.85 1.36 +chr3 28616657 28616657 A C het 212.79 55 29.27 3.87 +chr3 29129898 29129898 A G unknown 36.99 96 34.43 2.18 +chr3 29432605 29432605 A G unknown 398.68 43 33.27 13.29 +chr3 30713514 30713514 C T unknown 42.57 194 34.42 0.83 +chr3 31621559 31621559 T G het 55.24 195 36.69 0.66 +chr3 32493988 32493988 C G het 117.86 160 31.26 1.00 +chr3 32549625 32549625 C G het 48.01 47 23.38 1.33 +chr3 32860505 32860505 C G unknown 146.79 107 27.78 1.83 +chr3 32915402 32915402 G T unknown 56.99 216 33.95 0.98 +chr3 32994872 32994872 G A unknown 232.28 66 31.18 5.16 +chr3 33055721 33055721 A G hom 1588 84 26.72 18.90 +chr3 33425546 33425546 C A unknown 33.02 129 33.23 0.94 +chr3 33450911 33450911 A T unknown 63.92 89 25.13 1.10 +chr3 33673894 33673894 G C unknown 63.87 54 19.73 2.78 +chr3 33866929 33866929 G T unknown 128.15 47 36.04 7.54 +chr3 36872653 36872653 C T het 366.59 284 30.01 1.29 +chr3 36898958 36898958 T A het 183.72 136 22.04 1.84 +chr3 37034550 37034550 T A unknown 80.56 182 32.75 0.95 +chr3 37058214 37058214 C A hom 127.20 12 25.01 10.60 +chr3 37116575 37116575 C T het 268.58 79 27.68 3.40 +chr3 37170750 37170750 G C hom 88.27 10 30.61 9.81 +chr3 37330641 37330641 A T het 79.30 60 21.83 2.20 +chr3 37360698 37360698 T A unknown 47.44 58 33.66 1.22 +chr3 37670954 37670954 C T unknown 35.65 45 17.26 1.98 +chr3 37789807 37789807 A C unknown 56.90 70 20.12 1.54 +chr3 38053228 38053228 A G het 30.37 75 29.03 0.52 +chr3 38156015 38156015 C - het 153.91 46 22.85 4.28 +chr3 38162078 38162078 A T het 91.47 103 14.74 1.87 +chr3 38163579 38163579 A C het 215.86 63 28.66 3.43 +chr3 38180289 38180289 T G het 197.27 63 24.99 3.13 +chr3 38287502 38287502 C G het 144.63 80 33.97 1.81 +chr3 38292864 38292864 A C het 931.58 349 29.98 2.67 +chr3 38316591 38316591 G A het 175.79 275 35.46 0.84 +chr3 38355509 38355509 C T het 151.31 36 19.69 4.88 +chr3 38416011 38416011 A G het 104.27 77 32.44 1.35 +chr3 38521425 38521425 C T het 165.26 17 27.88 9.72 +chr3 38598878 38598878 A T het 34.55 69 32.34 0.59 +chr3 38627167 38627167 C A unknown 48.01 68 32.18 2.40 +chr3 38738717 38738717 G A het 546.79 73 37.98 10.13 +chr3 38793989 38793989 G A het 71.99 73 34.96 4.80 +chr3 38935894 38935894 G T het 54.41 52 29.62 1.30 +chr3 39135592 39135592 C G unknown 177.49 77 31.45 3.06 +chr3 39149218 39149218 A T het 94.81 33 37.23 3.79 +chr3 39178080 39178080 A G het 190.83 61 33.10 4.06 +chr3 39180099 39180099 T C het 531.99 203 37.66 15.65 +chr3 39226374 39226374 T G hom 128.25 71 23.98 1.81 +chr3 39227607 39227607 A T het 82.73 151 28.79 0.55 +chr3 39229900 39229900 T C hom 4596.01 205 29.45 22.42 +chr3 39449770 39449770 T G unknown 130.15 54 30.49 9.30 +chr3 40464867 40464867 A G het 83.67 95 32.26 1.58 +chr3 41291126 41291126 T G het 56.71 27 24.81 2.10 +chr3 41756986 41756986 A T unknown 608.79 148 37.42 6.15 +chr3 41978806 41978806 A C het 36.98 35 35.48 1.06 +chr3 42139542 42139542 T C hom 54.22 25 9.90 6.78 +chr3 42360275 42360275 G A unknown 50.77 6 22.40 16.92 +chr3 42633116 42633116 C A hom 53.72 42 25.97 1.73 +chr3 42701229 42701229 G A het 37.10 77 32.43 1.06 +chr3 42739732 42739732 C T unknown 116.25 176 36.07 0.80 +chr3 42793488 42793488 G T het 35.08 106 26.12 1.59 +chr3 42956273 42956273 T C hom 2861.98 135 23.89 21.20 +chr3 42983630 42983630 A C het 341.58 70 30.33 4.88 +chr3 43297504 43297504 A G unknown 32.26 17 14.54 4.61 +chr3 43591142 43591142 G A hom 1747.57 109 38.25 16.03 +chr3 43647299 43647299 T A unknown 65.09 116 31.04 1.48 +chr3 44286514 44286514 G A het 79.45 149 32.24 0.79 +chr3 44408864 44408864 - T hom 2636.96 104 27.69 25.36 +chr3 44509710 44509710 T C het 315.73 28 25.52 11.28 +chr3 44621082 44621082 A C unknown 47.78 253 18.06 0.39 +chr3 44673552 44673552 G C het 507.58 181 31.50 2.80 +chr3 44853691 44853691 T A het 50.80 64 30.65 1.59 +chr3 44854563 44854563 A G unknown 1241.56 82 33.67 21.41 +chr3 44959450 44959450 T G het 78.01 229 38.34 0.70 +chr3 45589032 45589032 G T het 483.86 139 35.48 3.48 +chr3 45637440 45637440 C G unknown 63.88 97 28.91 1.36 +chr3 45677677 45677677 G C het 43.55 282 30.64 0.31 +chr3 45773732 45773732 G A hom 1048.81 46 35.56 22.80 +chr3 45784963 45784963 T C hom 1445.59 72 31.51 20.08 +chr3 45988708 45988708 G T unknown 41.79 130 36.20 0.66 +chr3 46352355 46352355 T G hom 39.77 8 17.47 13.26 +chr3 46399798 46399798 T C het 1209.58 382 24.66 3.17 +chr3 46484964 46484964 G A het 1108.99 339 43.27 13.05 +chr3 46713320 46713320 G C het 36.03 21 20.33 2.40 +chr3 46721985 46721985 G T unknown 45.40 106 29.04 0.93 +chr3 46750532 46750532 G T hom 60.22 29 17.10 3.17 +chr3 46944368 46944368 T C unknown 1016.79 185 33.11 7.01 +chr3 47037256 47037256 A C het 217.87 148 28.47 2.00 +chr3 47049648 47049648 A C het 201.59 149 34.33 1.35 +chr3 47276968 47276968 C T unknown 2215.56 150 33.02 19.78 +chr3 47276986 47276986 A C het 83.55 215 36.13 0.90 +chr3 47384925 47384925 G T hom 1066.01 43 29.50 24.79 +chr3 47453373 47453373 T C het 268.19 95 33.13 3.67 +chr3 47453424 47453424 T G unknown 78.55 86 33.75 1.54 +chr3 47454208 47454208 C G het 109.64 156 25.53 1.41 +chr3 47680123 47680123 G A unknown 31 46 22.11 0.91 +chr3 47888005 47888005 T C unknown 54.99 133 33.64 1.90 +chr3 47896500 47896500 C T unknown 85.68 67 30.87 2.32 +chr3 47963204 47963204 A T het 169.26 36 22.60 4.98 +chr3 48465085 48465085 A G het 143.95 69 31.26 4.11 +chr3 48605952 48605952 C T hom 243.20 27 21.94 9.01 +chr3 48622487 48622487 A C het 33.37 72 22.71 0.88 +chr3 48624918 48624918 C G het 30.11 93 26.43 0.42 +chr3 48625814 48625814 C G hom 64.65 32 22.34 2.02 +chr3 48627133 48627133 C A hom 82.41 59 21.70 1.40 +chr3 48694491 48694491 A G hom 172.40 26 19.05 6.63 +chr3 48699437 48699437 T G het 135.41 178 33.33 0.76 +chr3 48716381 48716381 A G unknown 31.99 165 39.54 0.86 +chr3 48719654 48719654 C T het 131.64 47 20.41 3.76 +chr3 48789006 48789006 G A unknown 60.90 74 30.24 2.65 +chr3 48820381 48820381 T A het 179.44 43 20.70 5.13 +chr3 48820382 48820382 A T het 105.11 43 19.76 2.84 +chr3 49038918 49038918 C A het 72.11 116 29.78 0.77 +chr3 49060084 49060084 G A het 307.10 217 32.85 1.92 +chr3 49095139 49095139 T A het 558.58 123 28.24 4.54 +chr3 49149037 49149037 C T unknown 532.79 67 29.75 9.87 +chr3 49151535 49151535 A C het 83.82 162 33.80 0.69 +chr3 49161199 49161199 G T het 117.80 76 26.53 1.55 +chr3 49294403 49294403 G T het 396.25 253 29.35 1.57 +chr3 49459078 49459078 C G unknown 47.57 75 25.39 1.25 +chr3 49568095 49568095 G A hom 316.41 15 30.53 21.09 +chr3 49691657 49691657 T G het 309.58 111 32.64 2.79 +chr3 49699220 49699220 A T het 31.69 87 29.33 0.81 +chr3 49700668 49700668 A C het 183.95 82 30.61 3.17 +chr3 49714926 49714926 A G het 467.20 83 22.23 5.63 +chr3 49736172 49736172 C A het 204.62 29 27.56 7.06 +chr3 49739019 49739019 G T het 120.66 101 29.48 1.19 +chr3 49753489 49753489 T C unknown 142.55 125 33.82 2.16 +chr3 49755333 49755333 C A unknown 46.64 40 32.02 2.91 +chr3 49758026 49758026 C T het 198.58 75 26.08 2.65 +chr3 49836522 49836522 A T het 165 133 31.37 1.76 +chr3 49845391 49845391 C A het 37.31 55 35.11 1.24 +chr3 49881408 49881408 C T het 73 93 31.52 1.40 +chr3 49927501 49927501 A C het 84.02 48 24.93 1.75 +chr3 49934567 49934567 A G unknown 30.09 34 24.38 1.16 +chr3 50127877 50127877 G C het 77.44 109 33.31 1.14 +chr3 50142445 50142445 T G het 59.41 55 20.11 1.32 +chr3 50153355 50153355 A G het 51.67 111 32.82 0.78 +chr3 50231057 50231057 A C het 43.45 50 26.88 0.87 +chr3 50252143 50252143 G C het 97.70 123 21.22 0.79 +chr3 50333232 50333232 G T unknown 66.65 21 25.97 5.13 +chr3 50380330 50380330 T C het 35.68 40 27.42 2.38 +chr3 50390812 50390812 C T het 42.61 41 20.40 1.64 +chr3 50391214 50391214 C G unknown 251.54 86 36.43 6.14 +chr3 50392728 50392728 A T unknown 118.99 44 25.64 5.95 +chr3 50677763 50677763 G T unknown 50.71 151 35.57 1.54 +chr3 50685338 50685338 G C unknown 83.55 208 31.44 0.77 +chr3 50685518 50685518 A C het 51.13 95 31.46 1.19 +chr3 51312765 51312765 A T unknown 69.79 93 22.06 1.40 +chr3 51393937 51393937 T G het 37.59 101 16.73 0.51 +chr3 51412079 51412079 C A het 62.89 180 32.91 0.45 +chr3 51671468 51671468 T C het 84.08 136 36.21 1.40 +chr3 51741658 51741658 C T het 269.58 92 29.26 2.93 +chr3 51929183 51929183 C T unknown 1605.79 161 36.23 12.95 +chr3 51969653 51969653 G T unknown 50.43 89 32.47 1.15 +chr3 51994625 51994625 A G het 211.58 79 29.77 2.68 +chr3 52255617 52255617 G C unknown 44.94 102 29.23 0.88 +chr3 52301070 52301070 C A het 62.37 132 23.88 0.75 +chr3 52362121 52362121 A T het 37.84 61 24.30 0.84 +chr3 52386557 52386557 T A het 41.91 80 26.02 0.74 +chr3 52395574 52395574 T A hom 109.12 35 16.01 3.12 +chr3 52402943 52402943 A T het 122.41 120 27.88 1.02 +chr3 52406463 52406463 G T het 96.62 78 24.94 1.24 +chr3 52422067 52422067 G T het 235.59 44 26.16 5.35 +chr3 52425038 52425038 C A het 39.62 73 23.68 0.67 +chr3 52437475 52437475 C A unknown 37.49 117 32.42 0.66 +chr3 52472189 52472189 C G het 64.53 27 30.52 3.40 +chr3 52539050 52539050 A T unknown 83.30 146 32.23 0.77 +chr3 52555859 52555859 G A unknown 100.04 40 19.42 2.70 +chr3 52651486 52651486 C T het 83.55 168 37.52 1.55 +chr3 52726695 52726695 C T unknown 774.79 107 36.16 9.68 +chr3 52842229 52842229 T G het 174.32 171 29.88 1.36 +chr3 52853341 52853341 C T het 108.58 43 27.03 6.39 +chr3 52860634 52860634 T G unknown 95.90 96 31.20 2.08 +chr3 52867811 52867811 A T hom 140.18 33 16.47 4.25 +chr3 52950202 52950202 C A het 73.31 154 29.46 0.91 +chr3 52962416 52962416 C G het 35.42 40 27.92 1.31 +chr3 53212476 53212476 A G unknown 71.78 68 33.35 1.84 +chr3 53260710 53260710 G A unknown 291.81 45 31.12 7.89 +chr3 53757414 53757414 G C het 133.86 95 29.29 1.41 +chr3 53820881 53820881 A G unknown 50.99 189 37.63 1.76 +chr3 54157710 54157710 A T het 2286.54 92 35.17 24.85 +chr3 54419929 54419929 A C het 101.35 70 23.62 1.63 +chr3 54921903 54921903 T C het 284.99 99 33.56 12.95 +chr3 54930811 54930811 T A het 630.58 257 33.90 2.45 +chr3 55043613 55043613 G C unknown 72.78 10 24.79 14.56 +chr3 55108151 55108151 G T het 103.64 254 32.40 0.99 +chr3 55717889 55717889 T G het 143.79 119 34.28 1.84 +chr3 55768770 55768770 A C unknown 34.99 222 37.21 0.57 +chr3 56593543 56593543 C A hom 3845.01 112 36.25 34.33 +chr3 56650012 56650012 G C unknown 1103.79 139 34.16 11.50 +chr3 56807776 56807776 C T het 165.61 172 37.52 2.00 +chr3 57131950 57131950 T G unknown 119.10 162 31.41 1.59 +chr3 57139972 57139972 A G hom 1991.57 143 34.91 13.93 +chr3 57280047 57280047 A T hom 132.18 16 20.29 10.17 +chr3 57330338 57330338 A T het 171.79 102 32.52 2.29 +chr3 57343318 57343318 T G het 297.58 166 34.40 1.79 +chr3 57475351 57475351 T G hom 4254.01 120 36.42 35.45 +chr3 57487137 57487137 C A het 34.93 87 29.15 1.20 +chr3 58089827 58089827 G C het 346.58 88 30.54 3.94 +chr3 58112488 58112488 C T unknown 395.99 140 36.36 10.42 +chr3 58191103 58191103 G C unknown 44.30 23 21.39 3.69 +chr3 58196639 58196639 C T het 324.79 59 33.58 7.22 +chr3 58398813 58398813 A G het 675.58 56 37.66 12.06 +chr3 58625751 58625751 A G het 53.66 131 31.35 0.71 +chr3 58641352 58641352 C T hom 1272.57 76 34.35 16.74 +chr3 59908126 59908126 A G het 1950.58 184 37.61 10.60 +chr3 61548016 61548016 T G het 212.09 53 30.82 4.00 +chr3 62612013 62612013 C T hom 429.04 15 30.48 28.60 +chr3 63594732 63594732 A T het 49.19 70 27.52 0.96 +chr3 63601089 63601089 T A het 64.57 153 36.44 0.42 +chr3 63973959 63973959 T A het 69.74 236 38.30 0.66 +chr3 63976113 63976113 G C het 148.93 61 25.29 2.86 +chr3 64138716 64138716 A G hom 3557.01 101 35.24 35.22 +chr3 64518994 64518994 T C hom 4379.01 128 33.47 34.21 +chr3 64606682 64606682 G C het 177.66 78 33.90 2.28 +chr3 64619048 64619048 C T het 161.99 158 33.89 4.76 +chr3 64627752 64627752 C T unknown 493.79 87 30.00 8.37 +chr3 65350830 65350830 C T het 307.60 190 30.95 1.62 +chr3 65674240 65674240 T C unknown 71.87 34 19.33 2.66 +chr3 66023933 66023933 T C het 140.79 87 37.38 1.62 +chr3 66433548 66433548 T G het 129.30 159 28.92 1.16 +chr3 69129327 69129327 G C hom 109.14 21 16.55 6.06 +chr3 69134288 69134288 C A unknown 35.99 186 34.45 0.86 +chr3 69230591 69230591 A T het 44.86 243 29.36 0.26 +chr3 71247304 71247304 A G het 351.79 74 27.87 6.17 +chr3 73024174 73024174 A C het 126.57 237 30.51 1.15 +chr3 73438828 73438828 C G unknown 38.70 8 36.99 19.35 +chr3 73450130 73450130 T C het 770.58 216 35.09 3.57 +chr3 75680995 75680995 C A het 41.30 12 17.03 5.16 +chr3 75697540 75697540 T A hom 32.01 22 10.11 5.34 +chr3 75714548 75714548 C G het 303.26 62 14.35 4.89 +chr3 75718162 75718162 C G unknown 63.33 228 15.13 0.54 +chr3 75718317 75718317 G T het 261.93 95 21.51 2.76 +chr3 75718723 75718723 C G het 142.18 197 9.55 0.72 +chr3 75786450 75786450 G A unknown 35.79 22 20.00 2.56 +chr3 75787159 75787159 C T het 45.20 18 32.16 5.02 +chr3 75788076 75788076 A C unknown 36.77 5 23.91 18.39 +chr3 75790585 75790585 C G het 1652.58 182 29.91 9.08 +chr3 75790607 75790607 C T het 1608.58 133 27.08 12.09 +chr3 75790726 75790726 T C het 337.60 166 36.23 2.03 +chr3 75790807 75790807 C G het 1540.58 234 18.33 6.58 +chr3 75790809 75790809 G A het 873.58 224 17.64 3.90 +chr3 75791074 75791074 G - het 887.54 106 22.81 8.37 +chr3 75793775 75793775 T G hom 507.77 17 32.24 29.87 +chr3 75986874 75986874 G C hom 1429.29 110 23.97 12.99 +chr3 76484183 76484183 T C het 188.59 95 12.94 1.99 +chr3 78684891 78684891 A T het 263.60 186 32.75 1.42 +chr3 78700901 78700901 G T unknown 2338.79 219 40.93 14.71 +chr3 81810510 81810510 G T het 105.80 49 27.03 2.16 +chr3 86114693 86114693 A G het 84.08 68 35.74 1.75 +chr3 86267930 86267930 C T unknown 33.26 7 27.11 8.31 +chr3 88999967 88999967 G A het 262.79 75 27.95 5.26 +chr3 89468413 89468413 A G het 174.03 157 32.07 1.19 +chr3 89521541 89521541 A C het 461.83 88 19.49 5.25 +chr3 93780298 93780298 T A unknown 44.21 224 15.30 0.26 +chr3 97194422 97194422 T G hom 2667.99 84 35.16 31.76 +chr3 97599936 97599936 C G het 180.27 60 23.82 3.16 +chr3 97783546 97783546 A G het 295.09 49 29.74 6.02 +chr3 98311777 98311777 G C hom 48.28 23 26.01 4.02 +chr3 98377398 98377401 AACT - het 844.76 91 19.84 13.41 +chr3 98491619 98491619 G T het 187.07 105 35.84 7.19 +chr3 99979995 99979995 T A het 87.26 61 27.70 1.75 +chr3 100015146 100015146 G T hom 3029.54 140 31.98 21.64 +chr3 100073648 100073648 A T unknown 56.99 165 35.11 1.21 +chr3 100170596 100170596 T C het 197.55 120 35.82 2.99 +chr3 100174613 100174613 C T het 335.58 82 24.80 4.09 +chr3 100471876 100471876 T C het 143.02 68 20.15 2.80 +chr3 100473448 100473448 G T het 33.01 94 26.93 0.72 +chr3 100493404 100493404 A T unknown 33.70 87 34.27 0.86 +chr3 100558859 100558859 C T het 252.58 52 34.01 4.86 +chr3 100604455 100604455 A G het 72.73 60 26.85 1.21 +chr3 100630609 100630609 T A het 83.23 79 19.80 1.05 +chr3 100964800 100964800 T A het 110.68 240 36.44 0.69 +chr3 101133155 101133155 T C unknown 42.68 34 11.68 2.85 +chr3 101231921 101231921 T C hom 1597.02 85 28.65 18.79 +chr3 101241683 101241683 A C unknown 46.63 258 33.50 0.44 +chr3 101298838 101298838 T A het 84.49 127 18.30 0.85 +chr3 101571549 101571549 T C het 286.96 72 30.87 4.28 +chr3 101575882 101575882 T C hom 668.22 89 19.83 7.51 +chr3 101576035 101576035 A C het 440.79 214 27.36 3.10 +chr3 103349722 103349722 T G unknown 37.08 26 24.00 1.48 +chr3 103781824 103781824 C T het 851.79 134 32.43 8.78 +chr3 105086281 105086281 G C unknown 37.83 71 29.92 0.73 +chr3 105312417 105312417 T G hom 73 11 17.37 6.64 +chr3 107451907 107451907 C T hom 2260.69 80 32.13 28.26 +chr3 107882643 107882643 G A hom 487.71 23 22.98 21.20 +chr3 107937301 107937301 T G het 141.17 41 22.97 3.92 +chr3 107937347 107937347 A G het 532.58 148 33.07 3.60 +chr3 108096227 108096227 G C hom 652.26 22 31.66 29.65 +chr3 108218999 108218999 A C unknown 89.55 128 36.42 1.63 +chr3 108288430 108288430 A C het 168.86 105 31.19 1.61 +chr3 108541932 108541933 AT - hom 278.66 14 30.38 39.81 +chr3 108567982 108567982 A T het 117.02 82 20.93 1.63 +chr3 108690205 108690205 T A unknown 47.46 160 36.60 0.71 +chr3 108725862 108725862 T C het 646.36 80 33.48 8.08 +chr3 109635659 109635659 C T het 1044.74 134 24.15 7.80 +chr3 110845000 110845000 T C het 37.66 30 24.78 1.98 +chr3 111356045 111356045 G A het 391.62 76 31.99 5.15 +chr3 111356083 111356083 G C het 2397.31 89 31.05 26.94 +chr3 111632222 111632222 C T unknown 115.55 278 34.16 0.84 +chr3 111639353 111639353 G T hom 1032.31 36 31.50 28.68 +chr3 111705692 111705692 A C unknown 136.99 51 30.35 10.54 +chr3 111730546 111730546 G A het 1648.79 72 34.12 22.90 +chr3 111730591 111730591 G T het 1672.78 92 33.87 18.18 +chr3 111845861 111845861 C T het 71.77 112 31.02 1.89 +chr3 112066626 112066626 C G het 66.03 86 22.98 0.96 +chr3 112243557 112243557 A G het 73 340 9.81 0.30 +chr3 112267523 112267523 G A hom 2673.32 80 35.05 33.42 +chr3 112709861 112709861 G C het 67.66 59 24.25 1.47 +chr3 112997141 112997141 G A het 444.95 51 29.60 11.12 +chr3 113027118 113027118 A T unknown 53.02 93 32.81 0.80 +chr3 113507630 113507630 C A unknown 30.01 173 33.64 1.15 +chr3 113594987 113594987 T A unknown 66.47 56 23.19 1.80 +chr3 118897239 118897239 G A unknown 50.01 7 21.56 16.67 +chr3 118909689 118909689 T G het 864.58 280 34.18 3.09 +chr3 118943035 118943035 G A unknown 35.99 142 34.48 0.84 +chr3 119120716 119120716 T G unknown 68.74 86 31.48 1.53 +chr3 119196334 119196334 G T het 1375.58 117 40.23 11.76 +chr3 119211294 119211294 A G het 506.11 70 37.68 7.91 +chr3 119327605 119327605 C - het 412.95 172 38.40 10.32 +chr3 119328226 119328226 C T het 36.43 71 35.53 0.96 +chr3 119748218 119748218 C T het 38.87 108 21.74 0.56 +chr3 119904125 119904125 A G het 1051.58 108 33.50 9.74 +chr3 120764270 120764270 T C unknown 31.90 135 24.70 0.60 +chr3 121001172 121001172 A T unknown 60.69 63 32.38 1.48 +chr3 121263720 121263720 C A hom 3142.17 94 36.74 33.43 +chr3 121386987 121386987 C T het 456.60 81 29.62 5.64 +chr3 121410981 121410981 T C unknown 74.09 150 34.07 0.69 +chr3 121774221 121774221 G C unknown 71.54 104 37.30 1.56 +chr3 122259423 122259423 G C het 78.22 69 30.62 1.56 +chr3 122340524 122340524 C A hom 80.26 49 19.69 3.21 +chr3 122591234 122591234 A C het 53.74 138 32.43 0.85 +chr3 122646692 122646692 G C het 35.95 42 23.48 1.50 +chr3 122823877 122823877 C T unknown 76.22 6 23.91 15.24 +chr3 122942402 122942402 G A unknown 1289.79 140 34.86 13.30 +chr3 122978486 122978486 G A unknown 227.73 55 31.83 7.35 +chr3 123014877 123014877 C T hom 634.64 49 27.81 12.95 +chr3 123049707 123049707 G T hom 748.62 49 31.54 15.28 +chr3 123066484 123066484 G T het 34.34 56 28.85 0.78 +chr3 123345679 123345679 T A het 336.01 173 38.96 1.94 +chr3 123378534 123378534 C G het 983.85 68 28.52 14.47 +chr3 123417129 123417129 A G unknown 71.67 167 12.36 1.84 +chr3 123456432 123456432 C T hom 3877.01 112 35.75 34.62 +chr3 123512627 123512627 G T het 336.99 165 36.00 10.87 +chr3 123675370 123675370 C A het 46.98 66 33.71 0.75 +chr3 124196094 124196094 A T unknown 49.99 177 36.95 1.67 +chr3 124438439 124438439 T C het 37.91 23 28.66 2.23 +chr3 124449199 124449199 G A het 106.88 39 26.52 3.45 +chr3 124454174 124454174 A G unknown 199.22 34 33.08 8.30 +chr3 124746234 124746234 G A unknown 176.88 147 30.91 1.61 +chr3 125166581 125166581 G A het 55.55 120 32.49 1.18 +chr3 125466331 125466331 A G het 310.58 287 14.09 1.08 +chr3 126151797 126151797 T C unknown 277.99 36 29.94 9.27 +chr3 126193980 126193980 G A unknown 84.78 29 29.78 5.65 +chr3 126216829 126216829 T A het 298.59 80 25.63 3.73 +chr3 126218812 126218812 G A unknown 31.09 30 14.00 1.24 +chr3 126219030 126219030 T C het 596.58 63 27.73 9.47 +chr3 126219048 126219048 C A het 410.92 45 19.52 9.13 +chr3 126334214 126334214 T A het 85.24 62 30.41 2.08 +chr3 126390411 126390411 T G het 143 68 30.86 6.50 +chr3 126708251 126708251 C A het 334.26 140 28.32 3.21 +chr3 126940136 126940136 C A het 104.94 32 25.77 5.00 +chr3 127323387 127323387 T A het 270.58 77 26.30 3.51 +chr3 127327619 127327619 C T unknown 109.86 181 31.46 0.85 +chr3 127393276 127393276 C T het 49.40 97 25.10 0.76 +chr3 127407005 127407005 A T hom 106 6 26.36 17.67 +chr3 127441247 127441247 A G het 353.40 62 28.91 6.43 +chr3 127682112 127682112 G T het 49.87 73 30.60 0.68 +chr3 128205654 128205654 G T unknown 50.43 13 21.02 5.04 +chr3 128653952 128653952 A G hom 115.70 15 35.11 10.52 +chr3 128889289 128889289 A T unknown 33.99 190 27.04 0.77 +chr3 128889302 128889302 T C het 39.81 151 28.57 0.58 +chr3 128890647 128890647 A C unknown 34.53 83 31.21 0.93 +chr3 129023554 129023554 G C unknown 33.94 168 36.38 0.42 +chr3 129042758 129042758 T G het 243.60 105 17.30 2.32 +chr3 129044006 129044006 T C het 268.25 38 26.34 7.06 +chr3 129214488 129214488 A T het 96.99 96 29.59 1.31 +chr3 130159700 130159700 T A unknown 33.53 149 35.29 0.55 +chr3 130187777 130187777 T A unknown 60.38 299 31.89 0.40 +chr3 130282425 130282425 G C het 329.58 309 28.16 1.07 +chr3 130393973 130393973 T A het 177.82 74 31.56 3.56 +chr3 130463739 130463739 G A unknown 60.71 211 40.99 1.48 +chr3 130688134 130688134 A T het 119.59 85 30.87 1.41 +chr3 131271266 131271266 T A unknown 66.28 101 35.47 1.74 +chr3 131283151 131283151 T C het 85.11 102 26.18 0.83 +chr3 131442819 131442819 T G hom 54.30 7 26.83 9.05 +chr3 132203417 132203417 G C unknown 52.19 151 29.78 0.44 +chr3 132244406 132244406 G A hom 4608.01 134 35.71 34.39 +chr3 132401421 132401421 G A hom 799.61 41 33.06 19.50 +chr3 132409455 132409455 C T unknown 403.99 173 38.04 8.42 +chr3 132415515 132415515 G A unknown 35.37 152 31.94 1.01 +chr3 133185587 133185587 G C het 506.62 55 32.56 9.21 +chr3 133330044 133330044 T A het 98.73 84 30.69 2.19 +chr3 133375654 133375654 T G unknown 105.41 381 35.51 0.71 +chr3 133428433 133428433 C T het 99.28 29 24.08 5.84 +chr3 133698349 133698349 C T het 2252.79 255 37.52 11.61 +chr3 134078952 134078952 T A unknown 90.56 50 36.81 3.77 +chr3 134079204 134079204 G C het 174.70 94 31.07 2.39 +chr3 134670836 134670836 T C unknown 96.18 282 35.25 1.32 +chr3 135759669 135759669 - G unknown 668.82 56 39.21 13.93 +chr3 136012687 136012687 G C het 232.58 135 31.28 1.72 +chr3 136141553 136141553 A C unknown 79.24 57 31.30 2.14 +chr3 136728886 136728886 G T het 156.30 80 26.91 2.65 +chr3 137783329 137783329 G A unknown 69.68 102 29.14 1.74 +chr3 137885926 137885926 A G unknown 89.03 89 24.80 1.31 +chr3 138180971 138180971 C A het 121.55 140 31.11 1.99 +chr3 138181137 138181137 T G unknown 46.25 60 39.32 1.03 +chr3 138403658 138403658 T G unknown 49.23 116 30.62 2.34 +chr3 138815489 138815489 T G unknown 38.01 7 21.81 9.50 +chr3 139088481 139088481 T C unknown 42.73 23 25.59 3.88 +chr3 139098357 139098357 A C unknown 201.14 98 37.35 6.29 +chr3 139171924 139171924 G T het 91.62 75 30.51 1.22 +chr3 139257897 139257897 T G unknown 49.19 65 30.08 2.73 +chr3 140123396 140123396 C A het 333.58 158 32.17 2.11 +chr3 140185294 140185294 G A het 197.03 42 39.78 14.07 +chr3 140281101 140281101 C T het 508.59 114 30.75 4.46 +chr3 141163441 141163441 C T unknown 31.84 120 25.18 0.57 +chr3 141327474 141327474 G A het 674.55 210 40.00 6.88 +chr3 142746091 142746091 T G unknown 82.84 223 33.42 0.94 +chr3 142774058 142774058 T A unknown 31.26 23 16.22 3.47 +chr3 142840327 142840327 T A het 455.84 77 29.02 5.92 +chr3 145795761 145795761 C A het 163.80 328 29.09 0.75 +chr3 145824478 145824478 A G hom 1196.84 74 36.47 16.17 +chr3 145938696 145938696 G T het 237.60 95 30.77 2.50 +chr3 146311967 146311967 C A unknown 37.52 80 26.05 1.10 +chr3 147108922 147108922 T A het 57.74 87 32.36 0.86 +chr3 147113924 147113924 C T het 205.65 69 25.00 2.98 +chr3 148757889 148757889 C A het 145.76 131 32.76 1.11 +chr3 148847569 148847569 T G unknown 37.46 19 28.00 3.75 +chr3 148879883 148879883 A G unknown 452.79 54 35.57 12.94 +chr3 150280445 150280445 C G het 615.68 147 29.88 5.50 +chr3 150403805 150403805 T C het 514.58 164 26.12 3.14 +chr3 150659372 150659372 A C het 176.60 75 31.63 2.35 +chr3 151012054 151012054 T G het 552.58 237 32.72 2.33 +chr3 151163994 151163994 C T het 49.34 125 30.93 0.78 +chr3 152553974 152553974 C G het 35.51 90 31.32 0.57 +chr3 154866545 154866545 A C het 369.27 43 31.22 11.54 +chr3 154898181 154898181 T C het 1101.58 184 24.29 5.99 +chr3 155210509 155210509 G A het 226.60 99 32.34 2.29 +chr3 155893884 155893884 A G unknown 376.78 84 19.99 5.71 +chr3 156396285 156396285 C T het 457.58 186 36.41 2.46 +chr3 156422945 156422945 T A het 174.97 87 32.11 2.97 +chr3 156544584 156544584 C T het 1910.58 158 37.29 12.09 +chr3 156763291 156763291 G C unknown 189.99 197 29.74 3.52 +chr3 157098830 157098830 C T het 216.65 41 35.62 8.33 +chr3 158373550 158373550 T C unknown 608.79 285 27.78 3.14 +chr3 158970514 158970514 A G unknown 47.90 94 35.45 4.79 +chr3 160130110 160130110 G A hom 886.04 58 24.66 15.28 +chr3 160141147 160141147 G - hom 137.10 55 11.54 2.80 +chr3 161043633 161043633 T G het 51.90 122 31.65 0.43 +chr3 161090322 161090322 A G unknown 135.48 32 21.22 5.42 +chr3 163373192 163373192 T C unknown 41.01 6 19.87 10.25 +chr3 164700906 164700906 A T het 58.92 89 34.56 1.00 +chr3 164733721 164733721 G A het 2478.58 282 35.63 8.79 +chr3 164739055 164739055 A T het 1006.58 288 38.96 3.50 +chr3 167034814 167034814 T C het 1340.58 127 39.24 10.56 +chr3 167217960 167217960 C T unknown 556.99 238 30.61 10.71 +chr3 167245653 167245653 A C unknown 60.07 107 34.66 0.88 +chr3 169492016 169492016 - A unknown 1432.52 101 36.26 20.18 +chr3 169539649 169539649 T A unknown 488.59 47 30.41 14.37 +chr3 169703540 169703540 T A unknown 38.99 59 23.05 1.44 +chr3 169820191 169820191 A C het 41.95 98 35.01 1.17 +chr3 170797532 170797532 T G het 68.15 67 19.61 1.34 +chr3 171944688 171944688 C A het 168.59 93 33.33 1.81 +chr3 172046933 172046933 A G het 2601.78 130 35.51 20.01 +chr3 172165766 172165766 G C het 35.92 68 34.91 1.12 +chr3 172546930 172546930 C T hom 2038.99 89 27.28 22.91 +chr3 178538304 178538304 C A het 743.55 177 38.63 8.45 +chr3 178543622 178543622 G A unknown 121.71 146 35.25 1.14 +chr3 178978078 178978078 T G het 759.83 179 15.88 4.24 +chr3 179082050 179082050 G A het 415.59 68 26.13 6.11 +chr3 179103342 179103342 - T het 400.55 118 21.95 3.39 +chr3 179294065 179294065 A C het 169.70 121 35.77 1.97 +chr3 179469995 179469995 A G het 182.01 49 39.50 16.55 +chr3 179474767 179474767 A G unknown 737.79 76 27.87 12.72 +chr3 179593072 179593072 T A hom 2134.57 139 39.78 15.36 +chr3 180325658 180325658 T A het 53.27 21 22.01 3.80 +chr3 182178345 182178345 T G hom 33.01 51 9.44 1.03 +chr3 183027438 183027438 T C het 42.59 119 34.68 0.71 +chr3 183041201 183041201 C G unknown 954.56 125 30.25 11.64 +chr3 183210918 183210918 G T unknown 143.73 165 33.38 5.13 +chr3 183210991 183210991 G T unknown 2211.79 246 37.37 12.36 +chr3 183471850 183471850 C A het 152.86 235 31.23 0.65 +chr3 183504008 183504008 A C het 408.58 142 34.59 2.88 +chr3 183515936 183515936 T G het 43.56 67 29.04 1.32 +chr3 183800560 183800560 A G unknown 195.55 9 25.95 21.73 +chr3 183823561 183823561 C T unknown 94.23 108 23.86 1.74 +chr3 183823730 183823730 C G het 44.01 220 19.86 0.38 +chr3 183861458 183861458 T G unknown 137.02 27 28.18 5.71 +chr3 183976390 183976390 C A het 69.87 95 35.13 0.74 +chr3 184003217 184003217 T G het 249.58 121 27.16 2.06 +chr3 184005715 184005715 G T unknown 57.93 111 27.63 1.02 +chr3 184020100 184020100 - A het 1976.61 95 27.51 20.81 +chr3 184056135 184056135 A C hom 191.34 30 30.41 6.38 +chr3 184062329 184062329 C T het 225.58 108 28.37 2.09 +chr3 184064448 184064448 A C het 65.22 55 20.81 1.52 +chr3 184069822 184069822 C T het 150.79 173 27.26 1.26 +chr3 184075191 184075191 G T unknown 33.29 172 30.32 0.88 +chr3 184076817 184076817 G A unknown 94.58 123 28.91 1.50 +chr3 184289152 184289152 A G unknown 285.99 90 38.08 12.43 +chr3 184618583 184618583 A G hom 446.59 33 29.16 21.27 +chr3 184644509 184644509 C T het 33.85 100 27.64 0.59 +chr3 184714014 184714014 C T hom 714.34 24 34.38 31.06 +chr3 184911151 184911151 T C het 932.99 257 36.97 15.05 +chr3 185214358 185214358 G C het 60.37 37 18.80 2.24 +chr3 185407308 185407308 C G het 77.82 78 18.32 1.00 +chr3 185879431 185879431 C T unknown 35.56 142 35.69 0.46 +chr3 186006618 186006618 G C het 1171.58 159 29.49 7.37 +chr3 186015303 186015303 A G hom 3577.01 123 30.09 29.08 +chr3 186287777 186287777 T C hom 104.67 9 23.67 11.63 +chr3 186299242 186299242 T C het 138.41 136 26.02 1.02 +chr3 186335126 186335126 G T het 306.58 110 29.01 2.79 +chr3 186389630 186389630 G T het 135.69 60 18.49 2.26 +chr3 186437795 186437795 A G het 102.86 59 36.24 1.74 +chr3 186456886 186456886 A G het 323.58 85 26.73 3.81 +chr3 186509517 186509517 G A het 2383.57 125 36.42 19.07 +chr3 186617890 186617890 G A het 61.27 44 24.59 3.22 +chr3 186617896 186617896 G T het 32.31 52 23.18 1.40 +chr3 186790651 186790651 G C het 126.95 281 35.10 0.45 +chr3 186793300 186793300 G A het 275.61 73 22.89 3.78 +chr3 187088615 187088615 C A het 85.60 55 29.34 1.56 +chr3 187387983 187387983 G C hom 49.25 24 27.21 4.92 +chr3 187897423 187897423 G C hom 32.86 39 24.88 4.69 +chr3 189587274 189587274 A G unknown 372.79 37 37.34 17.75 +chr3 189590562 189590562 A T het 147.66 30 25.45 4.92 +chr3 190106072 190106072 G - het 908.54 120 30.88 7.57 +chr3 190158078 190158078 G T het 208.99 149 40.52 7.21 +chr3 191670384 191670384 A T het 73.50 24 25.34 5.25 +chr3 192874285 192874285 G A het 95.66 75 18.51 1.28 +chr3 193016895 193016895 T C hom 1171.58 68 32.16 17.23 +chr3 193031926 193031926 C T hom 2856.57 169 35.18 16.90 +chr3 193032569 193032569 G A het 135.97 58 31.74 3.78 +chr3 193081122 193081122 G T hom 1891.56 159 36.34 18.73 +chr3 193081830 193081830 A G hom 4425.01 134 34.28 33.02 +chr3 193096525 193096525 C T het 129.94 216 32.12 1.19 +chr3 193210596 193210596 T C het 30.93 49 29.87 1.10 +chr3 193336639 193336639 T C unknown 429.79 108 35.91 5.89 +chr3 194079899 194079899 T A het 74.28 16 17.49 6.19 +chr3 194362918 194362918 C T het 92.12 115 34.13 1.62 +chr3 194767300 194767300 A G hom 61.22 11 14.76 12.24 +chr3 195022946 195022946 T A unknown 63.56 104 23.21 1.51 +chr3 195256530 195256530 A C het 47.59 73 30.09 1.11 +chr3 195393030 195393030 A G hom 90.63 34 20.80 3.13 +chr3 195474159 195474159 G A hom 1628.56 124 36.08 19.86 +chr3 195500905 195500905 A C unknown 38.77 5 20.32 19.38 +chr3 195506117 195506117 G A hom 232.55 138 12.59 1.69 +chr3 195506118 195506118 C G unknown 64.42 132 12.72 0.60 +chr3 195510951 195510951 G A het 115.76 323 7.69 0.36 +chr3 195512262 195512262 C G het 61.12 133 11.28 0.63 +chr3 196045031 196045031 C A het 64.89 21 32.29 4.06 +chr3 196435529 196435529 T G unknown 138.55 122 31.81 2.27 +chr3 196627361 196627361 G A unknown 374.63 56 28.49 10.41 +chr3 196674749 196674749 C T het 635.79 111 29.65 8.26 +chr3 196771657 196771657 C T het 34.85 67 34.86 0.76 +chr3 196812439 196812439 A C het 38.84 216 36.92 0.42 +chr3 196865028 196865028 A C het 133.65 63 27.52 2.12 +chr3 196869688 196869688 A G hom 4013.01 124 33.59 32.36 +chr3 197482694 197482694 T G het 389.58 193 19.61 2.02 +chr3 197579466 197579466 C T unknown 482.99 194 36.82 9.66 +chr3 197703574 197703574 G C het 77.01 252 34.30 0.62 +chr4 64892 64892 G C het 313.59 339 16.76 0.93 +chr4 65108 65108 G A unknown 129.74 515 18.67 0.57 +chr4 501473 501473 C A het 75.32 27 32.65 5.38 +chr4 527785 527785 T A hom 69.32 51 14.99 1.73 +chr4 648643 648643 G A hom 5054.01 149 36.58 33.92 +chr4 656460 656460 T G het 480.58 61 31.20 7.88 +chr4 660363 660363 A T unknown 50.86 95 31.88 0.71 +chr4 676142 676142 G C unknown 40.24 39 28.15 1.15 +chr4 731340 731340 G A unknown 53.10 118 27.61 2.41 +chr4 843843 843843 A G het 230.72 31 30.88 7.44 +chr4 949133 949133 G T het 58.89 41 32.37 1.44 +chr4 956373 956373 C G het 199.80 70 30.96 4.00 +chr4 961374 961374 A G unknown 60.38 56 27.12 1.26 +chr4 983060 983060 T C hom 553.93 29 24.71 19.10 +chr4 1087328 1087329 AC - het 304.03 51 19.56 5.96 +chr4 1088767 1088767 G A hom 38.27 25 15.85 1.74 +chr4 1316051 1316051 G C het 72.90 71 22.58 1.40 +chr4 1377800 1377800 G A unknown 36.84 28 31.22 2.05 +chr4 1705447 1705447 C T het 617.99 170 38.68 12.61 +chr4 1737115 1737115 T C het 200.79 89 34.02 2.83 +chr4 1746125 1746125 - T unknown 319.90 30 26.14 11.43 +chr4 1806298 1806298 T G unknown 63.64 77 25.61 1.67 +chr4 1827333 1827333 G C het 291.75 66 25.18 4.42 +chr4 1932322 1932322 C T unknown 76.01 56 35.78 1.90 +chr4 1941325 1941325 G T unknown 30.06 57 32.15 0.67 +chr4 1985537 1985537 T A unknown 55.18 41 23.42 1.67 +chr4 1991616 1991616 G T het 557.58 123 34.52 4.53 +chr4 2129765 2129765 G C het 59.20 102 32.14 0.81 +chr4 2172950 2172950 C A unknown 37.40 102 31.43 1.25 +chr4 2178097 2178097 A T het 63.78 67 21.83 0.95 +chr4 2275889 2275889 T G het 132.58 65 29.76 2.04 +chr4 2307135 2307135 G A het 54.54 59 26.95 0.92 +chr4 2877667 2877667 G C unknown 530.79 165 27.85 4.50 +chr4 2900891 2900891 T C het 211.16 46 23.08 4.59 +chr4 2930300 2930300 C G unknown 45.93 60 26.54 1.48 +chr4 3005964 3005964 G A het 1863.79 222 42.30 12.18 +chr4 3029588 3029588 G A het 2073.57 124 33.38 16.72 +chr4 3105581 3105581 C A unknown 80.80 121 29.53 1.88 +chr4 3144441 3144441 A G het 185.69 61 27.43 3.04 +chr4 3148803 3148803 G A het 106.56 130 37.07 1.37 +chr4 3180192 3180192 C G het 327.58 140 31.66 2.34 +chr4 3408934 3408934 G A hom 40.77 3 26.97 20.38 +chr4 3475089 3475089 C T het 172.71 29 22.06 8.22 +chr4 3629822 3629822 G A hom 37.01 4 22.10 12.34 +chr4 3769789 3769789 G C het 38.76 79 24.45 0.64 +chr4 3944404 3944404 A G unknown 31.02 28 15.64 2.59 +chr4 4131146 4131146 G A unknown 174.78 41 13.70 7.60 +chr4 4199634 4199634 A T hom 2918.98 161 25.32 18.13 +chr4 4275287 4275287 C T het 1097.79 100 31.55 14.44 +chr4 4276475 4276475 C T unknown 361.99 169 35.58 9.05 +chr4 4298599 4298599 G A unknown 33.26 14 14.93 8.32 +chr4 4896233 4896233 A G het 147.96 37 19.95 5.10 +chr4 5642199 5642199 A G het 369.08 188 27.63 3.80 +chr4 5830263 5830263 T G het 173.26 83 29.82 2.09 +chr4 6080808 6080808 G C het 55.24 45 33.04 2.30 +chr4 6302707 6302707 C T hom 1657.56 203 37.16 11.35 +chr4 6335375 6335375 T C het 285.58 187 32.37 1.53 +chr4 6374230 6374230 - A hom 335.01 24 25.83 16.75 +chr4 6578372 6578372 A C het 482.60 93 25.08 5.19 +chr4 6600012 6600012 A G het 639.58 107 31.48 5.98 +chr4 7064003 7064003 - C hom 571.60 42 32.05 16.81 +chr4 7666131 7666131 C A unknown 61.32 156 33.66 0.51 +chr4 7698890 7698890 C A unknown 43.35 53 22.18 1.03 +chr4 7774715 7774715 C G het 50.88 48 23.31 1.54 +chr4 7873740 7873740 T G het 428.79 325 34.34 1.99 +chr4 8006928 8006928 C T unknown 316.05 34 30.20 12.64 +chr4 8029465 8029465 C A het 268.61 43 32.76 6.25 +chr4 8211530 8211530 G A unknown 44.56 61 30.74 1.44 +chr4 8214503 8214503 G C het 91.59 51 28.27 1.80 +chr4 9177262 9177262 G A het 421.72 88 17.36 4.79 +chr4 9177964 9177964 T G unknown 33.01 54 13.63 1.03 +chr4 9773196 9773196 C T hom 540.36 55 17.53 9.82 +chr4 9784650 9784650 T C unknown 68.03 178 10.98 0.51 +chr4 10257964 10257964 C G unknown 38.90 52 34.50 1.62 +chr4 10543621 10543621 A T het 126.62 72 27.43 1.76 +chr4 11401026 11401026 T G het 36.24 66 32.81 0.55 +chr4 11756186 11756186 C G hom 49.01 7 21.13 9.80 +chr4 13602012 13602012 A T het 310.58 194 30.43 1.60 +chr4 15556757 15556757 A G het 71 147 30.42 0.61 +chr4 15985897 15985897 T A unknown 39.32 142 29.77 0.55 +chr4 16008038 16008038 C G unknown 60.32 19 21.77 4.02 +chr4 16510204 16510204 T A unknown 212.01 185 35.67 2.12 +chr4 16597280 16597280 T A hom 5089.01 158 33.76 32.21 +chr4 17528399 17528399 A C unknown 102.56 104 22.83 1.94 +chr4 17590671 17590671 G A het 944.65 63 24.69 14.99 +chr4 17964624 17964624 G C unknown 61.58 74 29.66 1.99 +chr4 24410367 24410367 C T unknown 40.77 11 15.43 13.59 +chr4 25260884 25260884 A C het 47.33 79 30.83 0.91 +chr4 25396573 25396573 C G het 148.84 73 31.74 2.22 +chr4 25408724 25408724 A G hom 712.32 30 28.65 25.44 +chr4 25677949 25677949 G T unknown 33.02 227 35.65 0.66 +chr4 27209559 27209559 G T het 3168.57 172 35.00 18.42 +chr4 27586861 27586861 C T het 406.79 47 35.30 13.56 +chr4 36085012 36085012 T G het 31.94 68 31.01 1.39 +chr4 36179423 36179423 T C het 143.40 90 25.50 1.73 +chr4 37446267 37446267 A C het 98.70 227 32.77 0.96 +chr4 37447487 37447487 T A het 618.59 331 34.74 1.87 +chr4 38019961 38019961 G T het 45.04 57 24.87 3.00 +chr4 38774785 38774785 A G unknown 166 99 30.51 5.35 +chr4 38937317 38937317 T - unknown 114.83 70 22.76 2.05 +chr4 39344237 39344237 C T hom 119.51 9 24.73 19.92 +chr4 39447979 39447979 T G het 305.62 101 33.03 3.03 +chr4 39448891 39448891 T C het 115.67 133 32.07 0.87 +chr4 39459154 39459154 G A het 606.55 114 34.84 10.11 +chr4 39466851 39466851 A C het 280.58 173 35.48 1.62 +chr4 39512347 39512347 T C het 1315.79 166 35.87 11.54 +chr4 40022041 40022041 A G hom 213.55 15 22.78 19.41 +chr4 40045487 40045487 A T het 49.61 86 14.75 1.13 +chr4 40121472 40121472 A C het 52.48 28 25.35 1.94 +chr4 40133622 40133622 A C het 98.66 63 26.97 1.57 +chr4 40143799 40143799 G T hom 116 25 15.38 5.80 +chr4 40810663 40810663 A G hom 3382.01 280 37.89 17.99 +chr4 41628679 41628679 T A het 41.44 44 19.45 1.12 +chr4 41635603 41635603 C G het 900.58 145 31.33 6.21 +chr4 43032462 43032462 A G het 298.58 246 26.58 1.21 +chr4 43900842 43900842 G C hom 865.18 26 36.29 33.28 +chr4 43901081 43901081 G A het 126.60 170 16.19 0.74 +chr4 46066479 46066479 A T unknown 46.67 163 33.87 0.78 +chr4 46263864 46263864 - A het 696.01 46 27.79 15.13 +chr4 48076094 48076094 T G unknown 466.79 82 37.91 8.19 +chr4 48158761 48158761 A C het 1402.58 206 35.03 6.81 +chr4 49009125 49009125 T G het 92.94 53 25.76 1.86 +chr4 49491501 49491501 T C het 38.31 76 15.06 0.56 +chr4 52743877 52743877 T A het 32.03 107 24.28 0.44 +chr4 52777322 52777322 T G unknown 91.57 142 27.87 1.61 +chr4 52844469 52844469 T C unknown 45.74 22 26.74 2.69 +chr4 52945799 52945799 C T hom 1395.14 47 33.79 29.68 +chr4 55569949 55569949 G C het 66.04 140 35.95 0.51 +chr4 55604837 55604837 C A het 191.72 65 32.69 2.95 +chr4 56283969 56283969 G T het 69.26 40 21.19 3.01 +chr4 56428639 56428639 T G het 31.88 165 30.76 0.31 +chr4 57181779 57181779 A G het 183.92 127 23.40 2.07 +chr4 57182032 57182032 A C unknown 241.50 106 28.26 2.95 +chr4 57194589 57194589 T A het 125.65 321 37.60 0.85 +chr4 57335986 57335986 T G het 31.03 56 23.69 0.89 +chr4 57459503 57459503 G A het 336.91 75 19.12 4.49 +chr4 57798189 57798189 G A unknown 1277.79 141 35.80 12.29 +chr4 63376345 63376345 A G het 34.50 133 13.57 0.30 +chr4 66233192 66233192 T C het 183.74 95 33.22 5.25 +chr4 68928740 68928740 G A hom 1784.57 219 21.39 8.15 +chr4 68934306 68934306 G A unknown 90.81 38 26.18 3.24 +chr4 68938163 68938163 A T het 197.81 137 37.86 1.55 +chr4 68956498 68956498 C T hom 619.68 26 27.24 23.83 +chr4 69148268 69148268 G T unknown 38.11 70 17.46 0.75 +chr4 69327752 69327752 T C unknown 561.99 330 40.56 7.02 +chr4 69332537 69332537 G A het 567.99 292 36.18 8.35 +chr4 69434329 69434329 T G unknown 136.12 78 20.02 2.67 +chr4 69780634 69780634 C G het 1366.90 78 23.71 17.52 +chr4 69962719 69962719 G A het 421.63 215 22.07 1.96 +chr4 70355211 70355211 T C hom 748.32 180 13.08 4.16 +chr4 70807747 70807747 T C unknown 190.24 14 25.74 19.02 +chr4 71232701 71232701 C T het 1091.64 135 25.13 8.09 +chr4 71657059 71657059 A T het 99.98 67 25.34 2.33 +chr4 71670184 71670184 C T het 46.16 77 26.74 0.80 +chr4 71698132 71698132 T A het 241.87 297 38.23 0.81 +chr4 72411967 72411967 A G hom 1589.02 48 37.49 33.10 +chr4 73433123 73433123 A - het 414.54 61 31.93 6.80 +chr4 73792752 73792752 C G unknown 42.10 173 14.42 0.52 +chr4 74315794 74315794 G C het 94.20 66 33.16 1.96 +chr4 74347297 74347297 C T unknown 43.77 7 19.40 10.94 +chr4 75174327 75174327 A G het 56.72 72 24.53 0.79 +chr4 75680932 75680932 A T het 68.32 73 33.26 1.20 +chr4 75858445 75858446 GG - unknown 147.84 51 29.48 5.91 +chr4 76721414 76721414 C G het 1150.57 70 36.33 16.44 +chr4 76794345 76794345 T G hom 3133.98 162 34.01 19.35 +chr4 76797337 76797337 - AGAG hom 896.82 35 17.32 25.62 +chr4 77274242 77274242 T C hom 1536.57 96 33.79 16.01 +chr4 77660731 77660731 C G het 615.99 290 40.88 9.48 +chr4 77662568 77662568 T A het 55.78 20 34.68 2.79 +chr4 77692124 77692124 G T unknown 35.59 80 25.33 0.56 +chr4 78694368 78694368 T A het 149.20 68 24.51 3.47 +chr4 79102723 79102723 G C het 114.94 134 15.64 1.18 +chr4 79238448 79238448 T C het 1983.54 84 31.01 23.61 +chr4 79385511 79385511 A C het 31.03 191 32.88 0.63 +chr4 79398875 79398875 T G unknown 85.28 48 30.08 2.84 +chr4 79429793 79429793 A C hom 670.24 64 21.72 10.47 +chr4 79443774 79443774 T A hom 3044.14 92 37.43 33.09 +chr4 79461751 79461751 C A het 90.99 167 31.44 0.99 +chr4 80977078 80977078 T G het 597.59 60 36.63 9.96 +chr4 81002230 81002230 G A unknown 50.19 85 19.86 1.86 +chr4 82088283 82088283 T A het 53.75 64 26.75 0.84 +chr4 83570251 83570251 A G unknown 45.77 6 20.34 22.88 +chr4 83774949 83774949 C T het 91.10 38 37.55 2.46 +chr4 83791416 83791416 T A het 512.58 123 29.52 4.17 +chr4 83793243 83793243 A C het 1835.79 78 31.11 23.54 +chr4 83795820 83795820 C A het 689.58 105 23.79 6.57 +chr4 83891420 83891420 G C het 75.82 72 22.44 1.08 +chr4 83905884 83905884 A T het 383.70 204 37.30 2.14 +chr4 83989575 83989575 T C het 421.71 76 25.70 5.55 +chr4 84339254 84339254 C G het 114.20 285 38.55 0.62 +chr4 84367153 84367153 G T het 69.13 50 22.72 2.30 +chr4 84509466 84509466 C G het 349.60 121 36.41 2.89 +chr4 85166037 85166037 T C unknown 126.35 39 26.22 3.95 +chr4 85630112 85630112 G T het 54.85 118 31.69 1.31 +chr4 85634318 85634318 T A unknown 304.57 291 36.43 2.36 +chr4 85661387 85661387 T A unknown 361.84 178 39.18 2.66 +chr4 85699579 85699579 A G het 779.58 72 31.27 10.83 +chr4 85699789 85699789 T G het 450.59 103 27.18 4.37 +chr4 85771013 85771013 - C het 351.42 76 21.82 4.62 +chr4 86167605 86167605 T G hom 37.34 13 13.76 4.67 +chr4 86852246 86852246 C A het 94.30 63 25.05 1.65 +chr4 87834762 87834762 T C hom 838.08 47 22.60 17.83 +chr4 88035588 88035588 C T unknown 100.63 43 24.93 2.65 +chr4 88534235 88534235 A G het 1590.34 114 34.77 13.95 +chr4 88732746 88732746 A G unknown 1829.56 151 34.55 16.48 +chr4 88904140 88904140 T C unknown 64.41 28 32.85 7.16 +chr4 89430969 89430969 A T het 45.03 38 26.74 1.55 +chr4 89442864 89442864 A T het 215.58 114 22.72 1.89 +chr4 89711673 89711673 T A het 216.79 153 22.91 1.89 +chr4 90169816 90169816 A C unknown 69.20 224 36.96 1.28 +chr4 95206253 95206256 TATC - het 2279.53 118 30.17 19.32 +chr4 95507643 95507643 G A het 647.99 213 35.88 13.22 +chr4 95561664 95561664 T G het 393.80 81 26.62 4.86 +chr4 96073956 96073956 A T hom 1813.98 63 33.80 28.79 +chr4 96124118 96124118 G - het 187.72 69 19.17 3.48 +chr4 96127896 96127896 C T unknown 50.66 102 25.57 0.63 +chr4 98893398 98893398 A C unknown 105.14 141 30.64 1.88 +chr4 99064379 99064379 A G unknown 156 22 33.84 12.00 +chr4 99355147 99355147 A T het 106.73 105 31.20 1.08 +chr4 100129685 100129685 C T unknown 325.78 26 33.48 18.10 +chr4 100131609 100131609 A C het 737.58 180 36.29 4.10 +chr4 100200509 100200509 C T unknown 43.46 52 17.20 3.34 +chr4 100205588 100205588 T G unknown 31.38 120 17.79 0.36 +chr4 100232029 100232029 A T unknown 32.05 137 11.37 0.33 +chr4 100341643 100341643 G A unknown 757.79 90 39.15 12.84 +chr4 100738035 100738035 G T het 197.99 90 30.91 9.00 +chr4 100870936 100870936 A C het 74.55 153 34.75 0.98 +chr4 103184211 103184211 T C het 178.96 110 30.84 2.29 +chr4 103533600 103533600 A C het 103.03 110 31.53 1.11 +chr4 103595121 103595121 T C het 270.60 160 33.46 1.69 +chr4 104061625 104061625 T A het 110.27 68 27.01 2.76 +chr4 104064355 104064355 A C unknown 112.24 24 23.47 7.01 +chr4 104579603 104579603 A G het 144.68 42 21.88 3.44 +chr4 105393361 105393361 A G het 430.84 56 29.26 8.13 +chr4 106194181 106194181 A T het 70.99 41 25.19 2.22 +chr4 106196951 106196951 A G het 1587.55 201 39.54 14.70 +chr4 106377179 106377179 G T unknown 35.02 159 26.04 0.33 +chr4 106474078 106474078 G A het 803.79 111 32.85 10.30 +chr4 108575838 108575838 G A het 338.58 152 33.39 2.23 +chr4 108578167 108578167 G T unknown 35.99 178 34.98 0.92 +chr4 108622241 108622241 C T hom 4502.01 172 35.43 26.17 +chr4 108954399 108954399 T C het 66.55 154 32.23 0.96 +chr4 108984849 108984849 T C unknown 37.54 55 22.48 0.92 +chr4 109579835 109579835 C T het 611.86 47 26.71 13.02 +chr4 109735133 109735133 T C het 965.84 60 27.38 16.10 +chr4 110580084 110580084 G T het 270.01 26 27.22 10.39 +chr4 110606633 110606633 C G het 41.30 25 26.39 1.80 +chr4 110800819 110800819 T C het 45.73 112 16.89 0.41 +chr4 111539971 111539971 T G het 70.77 37 32.25 2.62 +chr4 113352899 113352899 G A het 2070.57 149 33.54 13.90 +chr4 113353285 113353285 T C hom 2304.06 95 34.57 24.25 +chr4 113362316 113362316 A G het 1535.79 305 38.87 7.31 +chr4 113569221 113569221 G T het 51.60 71 15.29 1.72 +chr4 114179133 114179133 C T het 257.62 54 25.23 4.77 +chr4 114224062 114224062 T C het 200.55 68 26.34 3.29 +chr4 114257001 114257001 G C het 71.85 108 32.83 0.92 +chr4 114288648 114288648 A T unknown 42.55 35 19.58 4.25 +chr4 114290860 114290860 G C unknown 120.98 155 26.94 1.04 +chr4 114290880 114290880 A T unknown 48.99 149 31.24 1.81 +chr4 114423979 114423979 G C unknown 41.13 25 27.61 3.43 +chr4 117519681 117519681 C T het 61.91 75 14.93 1.72 +chr4 119435061 119435061 C T unknown 71.25 152 7.99 1.19 +chr4 120072238 120072238 A G hom 583.68 51 29.16 16.68 +chr4 120446869 120446869 A - het 612.55 115 25.58 5.33 +chr4 120987875 120987875 G T hom 52.22 68 13.92 1.58 +chr4 122258063 122258063 A G het 6494.01 216 37.25 30.06 +chr4 122824052 122824052 C T hom 1273.56 117 35.78 15.92 +chr4 122833314 122833314 C T hom 250.34 31 34.17 17.88 +chr4 123167220 123167220 G C het 129.98 25 28.22 5.20 +chr4 123268706 123268706 G C het 373.58 187 33.48 2.00 +chr4 123664288 123664288 T A het 158.56 154 33.09 2.17 +chr4 123664388 123664388 G C het 249.04 152 36.56 2.09 +chr4 123664639 123664639 A G unknown 40.12 105 35.89 1.25 +chr4 124177233 124177233 A T het 130.86 178 33.65 1.19 +chr4 126315034 126315034 T C hom 6057.01 182 32.76 33.28 +chr4 126384691 126384691 A T het 49.84 194 33.19 0.68 +chr4 128627050 128627050 C T het 686.75 42 27.86 16.35 +chr4 128688429 128688429 A C het 182.26 87 19.17 2.25 +chr4 130027774 130027774 G T unknown 116.92 89 34.84 1.89 +chr4 133467448 133467448 C A hom 640.41 33 26.34 19.41 +chr4 136331203 136331203 T A unknown 90.26 47 24.57 3.47 +chr4 138442438 138442438 C G het 180.62 73 27.66 2.47 +chr4 138449812 138449812 C G het 1513.58 310 33.72 4.88 +chr4 139144337 139144337 G A het 38.74 44 31.65 0.99 +chr4 140394238 140394238 C T het 140.40 100 35.66 1.53 +chr4 140441359 140441359 G T het 462.58 66 31.29 7.01 +chr4 141311960 141311960 T C hom 414.80 21 22.85 19.75 +chr4 141317220 141317220 G A unknown 873.99 329 32.52 9.50 +chr4 141543419 141543419 T G het 177.19 105 27.55 2.11 +chr4 141578155 141578155 C T het 578.58 180 21.32 3.21 +chr4 141598107 141598107 A C het 40.50 131 27.84 0.36 +chr4 141847279 141847279 G A het 199.99 117 36.67 8.70 +chr4 141870522 141870522 C A unknown 110.58 168 33.35 1.35 +chr4 142152533 142152533 G T unknown 39.99 164 29.66 3.33 +chr4 143043393 143043393 C A het 104.85 81 35.81 1.29 +chr4 143235918 143235918 G C het 302.60 114 23.37 2.65 +chr4 144361645 144361645 A C hom 31.84 17 30.43 4.55 +chr4 144447636 144447636 C A unknown 38.79 104 30.42 0.99 +chr4 144619376 144619376 A T het 119.77 141 32.06 0.85 +chr4 144918893 144918893 A G hom 559.75 64 18.97 8.75 +chr4 145656090 145656090 T A het 218.81 86 36.84 3.47 +chr4 146475300 146475300 C T het 31.75 74 31.26 0.77 +chr4 148559657 148559657 C T het 207.26 56 21.87 3.70 +chr4 149357273 149357273 C A het 75.67 128 36.92 1.18 +chr4 151504904 151504904 G A unknown 48.43 81 30.15 1.03 +chr4 152020756 152020756 G T unknown 42.38 37 25.86 1.93 +chr4 152203436 152203436 T G het 600.58 268 32.43 2.24 +chr4 154197186 154197186 A C het 235.70 109 33.48 2.65 +chr4 154601214 154601214 A C het 54.17 64 23.69 0.92 +chr4 155156687 155156687 G T unknown 55.99 228 38.07 1.40 +chr4 155242383 155242383 C T het 560.56 105 36.72 10.01 +chr4 155666058 155666058 G A het 33.96 67 25.89 0.65 +chr4 155720274 155720274 T C het 606.55 103 37.44 11.23 +chr4 156289900 156289900 C T het 859.57 112 32.14 7.67 +chr4 158142742 158142742 T C het 244.58 97 28.87 2.52 +chr4 159092190 159092190 G T het 89.44 133 37.49 0.97 +chr4 159214475 159214475 A G unknown 46.27 13 24.82 6.61 +chr4 159642558 159642558 C G het 58.60 86 34.88 0.75 +chr4 160099411 160099411 A G hom 147.61 9 31.53 24.60 +chr4 160262708 160262708 T A het 109.85 38 25.19 2.97 +chr4 163032413 163032413 T G het 444.69 166 37.94 2.68 +chr4 163906153 163906153 G T hom 219.67 39 32.72 15.69 +chr4 164187042 164187042 T C unknown 42.24 37 19.87 1.92 +chr4 164394761 164394761 G - unknown 185.86 61 22.54 4.04 +chr4 164507104 164507104 G T het 336.59 50 29.33 6.73 +chr4 164853898 164853898 A T het 34.23 70 18.68 0.65 +chr4 165922874 165922876 TGG - hom 632.73 29 17.52 21.82 +chr4 166006916 166006916 T G het 34.36 19 28.94 2.02 +chr4 166259757 166259757 T C het 45.30 64 25.46 0.73 +chr4 169279170 169279170 A G hom 1165.57 76 33.10 15.34 +chr4 169337921 169337921 C G unknown 58.85 135 30.17 1.07 +chr4 169341614 169341614 T C het 42.16 43 28.50 4.68 +chr4 169362557 169362557 C G unknown 887.79 249 35.01 4.96 +chr4 169374254 169374254 A C het 73.49 132 30.17 0.78 +chr4 169392982 169392982 C T het 182.64 169 35.29 1.08 +chr4 169842828 169842828 C G het 45.81 107 29.12 0.43 +chr4 170057398 170057398 A T het 418.60 191 30.66 2.19 +chr4 170671821 170671821 A C unknown 35.95 255 16.79 0.34 +chr4 174189175 174189175 A C het 39.14 85 29.78 1.09 +chr4 175439123 175439123 A G unknown 68.62 47 22.72 2.14 +chr4 175604008 175604008 C T het 184.99 158 33.07 5.29 +chr4 177095908 177095908 A G unknown 1274.79 127 38.38 15.74 +chr4 177136773 177136773 T A het 199.25 102 35.68 1.95 +chr4 183600882 183600882 G C het 103.56 156 29.31 1.36 +chr4 183673247 183673247 T A unknown 103.33 24 19.76 20.67 +chr4 184182001 184182001 A G hom 2478.98 72 34.76 34.43 +chr4 184301020 184301020 C T het 277.03 55 36.35 13.85 +chr4 184589190 184589190 T A het 632.58 234 35.78 2.70 +chr4 184618991 184618991 G C het 139.31 98 31.80 1.86 +chr4 184922669 184922669 G A het 3192.78 141 38.28 22.64 +chr4 184938129 184938129 T A unknown 68.64 20 31.95 13.73 +chr4 185018423 185018423 C G unknown 32.99 191 37.72 0.79 +chr4 185941337 185941337 T G het 156.79 88 30.47 2.70 +chr4 186244870 186244870 T G het 65.56 154 36.27 0.71 +chr4 186336583 186336583 G A hom 1374.20 50 32.86 27.48 +chr4 186551803 186551803 T G hom 49.51 34 16.36 1.77 +chr4 187158034 187158034 G A het 462.59 111 33.67 4.17 +chr4 187172976 187172976 G C het 247.80 183 40.62 1.51 +chr4 187517619 187517619 T G het 153.84 73 31.81 3.42 +chr4 187518976 187518976 C T het 3415.01 226 32.07 19.29 +chr4 189988321 189988321 G A unknown 39.01 8 21.06 6.50 +chr4 190503289 190503289 C T hom 116.27 7 32.15 19.38 +chr4 190534520 190534520 T A unknown 58.98 4 22.28 19.66 +chr4 190862259 190862259 C A unknown 61.07 73 21.41 1.09 +chr4 190942617 190942617 C T hom 58.26 50 10.31 2.24 +chr4 190943538 190943538 G T het 469.81 405 25.92 1.65 +chr5 156287 156287 G A unknown 184.99 108 34.59 7.40 +chr5 457261 457261 C A het 196.53 17 33.18 11.56 +chr5 462470 462470 G T unknown 84.30 107 25.67 3.12 +chr5 481606 481606 C G unknown 52.63 98 25.01 0.67 +chr5 484617 484617 T A het 40.05 30 20.55 1.34 +chr5 640731 640731 C A het 61.05 34 24.59 2.44 +chr5 766910 766910 C T het 52.78 64 22.82 1.12 +chr5 767082 767082 G C unknown 45.77 37 15.72 1.53 +chr5 796147 796147 C G unknown 48.23 235 10.97 0.83 +chr5 912134 912134 C A het 43.95 92 26.07 0.69 +chr5 1032243 1032243 C G unknown 66.89 48 27.37 3.34 +chr5 1034870 1034870 G T unknown 88.62 75 24.83 1.48 +chr5 1052399 1052399 C A het 61.01 58 29.06 1.69 +chr5 1090364 1090364 A G unknown 39.77 4 22.40 13.26 +chr5 1225856 1225856 T A unknown 32.98 43 20.94 1.18 +chr5 1232421 1232421 G C unknown 142.04 19 27.72 8.88 +chr5 1235808 1235808 T C unknown 50.18 105 29.83 0.82 +chr5 1280215 1280215 A T het 130.72 176 36.59 1.45 +chr5 1325780 1325780 C T hom 756.83 68 24.39 11.13 +chr5 1409746 1409746 T G het 55.72 32 19.67 2.32 +chr5 1409753 1409753 C T het 34.92 32 20.67 2.18 +chr5 1473977 1473977 A G het 1075.09 45 31.96 23.89 +chr5 1772033 1772033 T C unknown 30.27 9 21.92 6.05 +chr5 1879899 1879899 T G het 99.07 103 30.22 0.96 +chr5 3314455 3314455 T C unknown 39.01 7 18.04 7.80 +chr5 5223073 5223073 A G het 1292.80 78 33.68 16.57 +chr5 5235096 5235096 A G het 378.55 56 31.35 12.21 +chr5 6607482 6607482 C G het 80.95 96 26.79 1.11 +chr5 7706857 7706857 G A unknown 117.86 174 29.25 1.46 +chr5 7706888 7706888 A T het 268.83 183 27.24 1.47 +chr5 7706974 7706974 T C het 126.86 145 28.68 0.87 +chr5 7885959 7885959 A G unknown 1314.79 200 34.54 9.26 +chr5 7892816 7892816 A C het 115.41 92 28.97 2.14 +chr5 9199533 9199533 T G unknown 37.01 9 16.00 6.17 +chr5 10254851 10254851 T G het 272.74 96 19.18 2.84 +chr5 10258125 10258125 G A het 605.58 48 33.85 12.62 +chr5 10261616 10261616 T G het 128.32 207 29.12 0.62 +chr5 10261965 10261965 C G hom 35.01 6 19.41 7.00 +chr5 10433815 10433815 T C het 454.58 112 28.79 4.06 +chr5 10489229 10489229 T C hom 41.77 26 14.21 10.44 +chr5 10973927 10973927 T C het 105.99 72 37.59 4.82 +chr5 13721378 13721378 A G het 312.99 91 39.10 15.65 +chr5 13864728 13864728 C A het 423.99 170 36.54 10.34 +chr5 14293345 14293345 G A het 266.79 41 39.45 9.88 +chr5 14372440 14372440 C T unknown 75.25 4 36.72 18.81 +chr5 14400955 14400955 T C unknown 34.24 27 21.50 2.45 +chr5 14482732 14482732 A C het 171.69 68 25.35 2.52 +chr5 14713685 14713685 G T het 51.81 80 35.34 0.65 +chr5 15451973 15451973 T G hom 323.08 45 17.24 7.18 +chr5 16463421 16463421 T G het 1290.58 172 26.03 7.50 +chr5 16463694 16463694 G A het 894.58 238 30.88 3.76 +chr5 16465326 16465326 G C het 83.61 121 23.50 1.37 +chr5 16483310 16483310 T G het 573.58 55 37.71 10.43 +chr5 16671492 16671492 T C het 295.83 94 30.34 3.48 +chr5 17216670 17216670 A T het 40.68 83 22.00 0.99 +chr5 17365515 17365515 T A hom 41.01 8 24.25 5.13 +chr5 18783485 18783485 A G unknown 287.69 65 20.74 7.19 +chr5 21482878 21482878 C A hom 53.47 54 10.25 1.30 +chr5 21491375 21491375 T C het 32.72 453 9.29 0.07 +chr5 21817247 21817247 A G het 594.22 68 33.26 14.86 +chr5 23972368 23972368 T G het 122.64 36 22.46 3.41 +chr5 24535140 24535140 T C unknown 262.81 63 23.07 5.05 +chr5 31076540 31076540 C T unknown 35.25 10 23.61 5.04 +chr5 31472087 31472087 T A het 947.55 163 30.51 11.28 +chr5 31526898 31526898 G C het 95.80 113 27.68 1.11 +chr5 32073984 32073984 T C het 833.58 339 34.87 2.46 +chr5 32089747 32089747 A C unknown 79.56 125 31.86 1.40 +chr5 32126178 32126178 A C het 126.70 49 29.04 3.33 +chr5 32355867 32355867 T G het 650.65 100 20.46 6.51 +chr5 32712616 32712616 A T het 186.79 199 34.23 1.36 +chr5 33461226 33461226 A G het 933.79 142 30.48 9.83 +chr5 33936866 33936866 C T unknown 32.99 121 35.99 1.06 +chr5 34845473 34845473 C A hom 1425.08 50 34.88 28.50 +chr5 34845810 34845810 C G het 122.28 61 24.54 2.22 +chr5 35033563 35033563 A C het 102.63 86 23.10 1.19 +chr5 35763916 35763916 A G hom 651.94 25 28.67 26.08 +chr5 35789273 35789273 A G unknown 85.55 250 36.09 0.82 +chr5 35790237 35790237 C G het 100.61 104 24.46 0.97 +chr5 35838862 35838862 A G unknown 50.01 6 23.01 12.50 +chr5 35910419 35910419 C T hom 2301.63 96 37.67 23.98 +chr5 37209419 37209419 G T het 51.60 39 15.10 1.32 +chr5 37213589 37213589 T G het 356.92 59 27.07 6.05 +chr5 37371184 37371184 C G hom 63.66 17 20.53 7.07 +chr5 37722930 37722930 A T het 38.29 92 24.62 0.77 +chr5 37777744 37777744 A G hom 33.26 12 15.29 4.75 +chr5 38412733 38412733 G C het 233.59 81 26.45 2.88 +chr5 38484879 38484879 T A het 265.76 103 32.01 2.58 +chr5 38530486 38530486 A - hom 502.64 26 24.56 19.33 +chr5 38820695 38820695 G A unknown 153.55 146 23.19 2.84 +chr5 38820753 38820757 AAAGA - het 2056.24 136 24.35 23.10 +chr5 38869090 38869090 G C het 123.23 64 25.29 2.16 +chr5 39364358 39364358 G A het 33.31 11 35.38 11.10 +chr5 39721133 39721133 G C unknown 33.37 136 20.79 0.50 +chr5 41045768 41045768 G A hom 3085.98 124 28.53 24.89 +chr5 42769647 42769647 T C unknown 154.64 38 29.69 10.31 +chr5 43232448 43232448 G C het 138.79 93 19.77 1.49 +chr5 43298557 43298557 C T het 772.58 116 34.65 6.66 +chr5 44112449 44112449 T G unknown 71.25 32 16.07 2.64 +chr5 50571182 50571182 C T het 108.67 72 16.59 3.10 +chr5 52157299 52157299 G C het 264.59 113 22.87 2.34 +chr5 52193414 52193414 - A hom 1169.25 44 35.96 26.57 +chr5 52227986 52227986 T G het 206.26 36 26.79 5.73 +chr5 52367666 52367666 A T het 56.25 8 32.75 11.25 +chr5 52781735 52781735 T A het 157.99 174 31.44 1.76 +chr5 53408999 53408999 A C het 171.09 127 31.33 1.60 +chr5 53815066 53815066 C A het 232.33 73 14.84 3.18 +chr5 54566350 54566350 A G het 169.94 124 25.13 1.37 +chr5 54594439 54594439 G T unknown 156.17 99 29.12 2.23 +chr5 54640891 54640891 G A het 168.34 38 30.77 4.43 +chr5 54645488 54645488 T A het 83.79 95 28.54 1.35 +chr5 54710085 54710085 T A het 79.48 39 16.60 2.09 +chr5 54771433 54771433 G A unknown 47.01 5 23.75 15.67 +chr5 54948593 54948593 C A het 108.03 63 18.45 1.71 +chr5 55110834 55110834 A T het 31.47 233 33.52 0.25 +chr5 55455707 55455707 G T unknown 52.68 155 26.75 1.20 +chr5 56778103 56778103 A G unknown 1436.79 182 26.97 10.41 +chr5 57753437 57753437 G A unknown 596.84 69 36.92 12.70 +chr5 57878934 57878934 A C het 191.42 63 33.62 3.04 +chr5 59943287 59943287 C T het 135.79 186 34.86 0.95 +chr5 61662162 61662162 T G het 46.61 36 32.71 2.45 +chr5 63802467 63802467 A - het 225.62 41 19.68 5.50 +chr5 64522124 64522124 T C unknown 382.90 46 40.60 11.97 +chr5 65054449 65054449 C T unknown 65.03 157 35.30 2.60 +chr5 65054811 65054811 A G hom 431.12 22 30.40 19.60 +chr5 66479516 66479516 A G het 479.58 250 31.82 1.92 +chr5 67569391 67569391 A C unknown 457.79 120 37.05 6.02 +chr5 68398900 68398900 T A het 642.58 225 29.21 2.86 +chr5 68669617 68669617 G T het 135.73 84 30.36 1.62 +chr5 69784426 69784426 A C unknown 43.30 34 15.83 1.35 +chr5 69805614 69805614 C T unknown 34.08 40 15.18 1.14 +chr5 70809169 70809169 A G het 1522.58 301 31.73 5.06 +chr5 70819663 70819663 C T hom 101.28 34 19.44 3.75 +chr5 70834833 70834833 G A het 669.58 72 34.26 9.30 +chr5 70837517 70837517 T A het 182.76 107 29.45 1.71 +chr5 70888918 70888918 T A hom 96.26 11 26.58 8.75 +chr5 70895664 70895664 T A het 36.08 96 35.56 1.24 +chr5 71494521 71494521 C G het 68.48 129 30.33 0.71 +chr5 72161479 72161479 T A unknown 71.76 104 28.56 1.04 +chr5 72201058 72201058 G A unknown 325.99 92 31.81 11.64 +chr5 72377680 72377680 C G unknown 33.08 227 33.83 0.56 +chr5 72498020 72498020 C T unknown 35.77 5 18.70 17.89 +chr5 72805121 72805121 C T hom 264.69 105 12.50 2.52 +chr5 73142296 73142296 C T het 2378.58 228 38.32 10.43 +chr5 74325500 74325500 T G het 568.58 196 33.99 2.90 +chr5 74677861 74677861 A C het 200.95 108 37.67 1.86 +chr5 74876984 74876984 G T het 171.59 41 21.65 4.19 +chr5 75427524 75427524 A C het 213.87 66 28.96 3.89 +chr5 75806604 75806604 T G het 31.69 51 22.17 0.79 +chr5 75932869 75932869 C T unknown 1241.79 131 35.02 15.52 +chr5 75970552 75970552 T G het 38.22 87 35.93 0.44 +chr5 76003101 76003101 T G het 71.29 63 29.56 1.21 +chr5 76348544 76348544 T C unknown 56.25 47 19.08 2.01 +chr5 76355423 76355423 T A unknown 60.62 128 23.65 1.17 +chr5 77114598 77114598 A G unknown 58.01 10 19.47 6.45 +chr5 78260263 78260263 G C het 82.35 60 21.96 1.42 +chr5 78296843 78296843 G A het 316.19 199 19.00 1.90 +chr5 78586914 78586914 G T hom 1446.59 70 30.65 20.67 +chr5 79029288 79029288 C A het 1756.79 284 37.35 8.96 +chr5 79048545 79048545 G A het 134.99 186 31.44 1.07 +chr5 79354728 79354728 C T unknown 69.63 25 21.17 5.36 +chr5 79366053 79366053 C G het 72.86 53 32.67 1.87 +chr5 79741018 79741018 T A het 1299.23 84 33.64 16.04 +chr5 79797540 79797540 A T hom 58.95 70 16.44 0.84 +chr5 80256765 80256765 G C het 76.37 38 28.31 2.46 +chr5 80476059 80476059 G C unknown 30.99 157 36.05 1.03 +chr5 80508274 80508274 C T het 41.59 105 31.49 0.90 +chr5 80809489 80809489 T C het 253.58 178 31.60 1.42 +chr5 81572184 81572184 G C het 654.55 181 34.37 6.23 +chr5 82834009 82834009 G A unknown 409 147 31.01 11.05 +chr5 85580189 85580189 G C unknown 34.32 91 13.95 0.65 +chr5 86633973 86633973 G A het 1321.58 133 31.91 9.94 +chr5 86658348 86658348 T A het 49.24 59 24.17 0.91 +chr5 88215156 88215156 C A het 86.32 45 26.03 1.92 +chr5 89815312 89815312 - A het 184.19 50 28.45 4.00 +chr5 89938605 89938605 A G het 53.83 355 34.05 0.24 +chr5 89979817 89979817 T G unknown 152.55 283 36.36 1.48 +chr5 90072414 90072414 C A het 178.08 333 34.66 1.21 +chr5 90106010 90106010 T A het 423.39 50 22.81 9.20 +chr5 90119324 90119324 G A hom 8899.01 301 35.37 29.56 +chr5 92226359 92226359 G C het 1153.79 68 27.52 16.97 +chr5 93159773 93159773 G T het 66.74 345 34.72 0.47 +chr5 93752958 93752958 A G unknown 71.55 191 29.93 0.83 +chr5 93856613 93856613 A T het 75.86 74 30.39 1.43 +chr5 93987532 93987532 C A het 1182.57 94 34.65 12.58 +chr5 93989179 93989179 C A het 57.61 77 23.71 1.13 +chr5 95124546 95124546 A C het 254.59 85 32.73 3.00 +chr5 96075817 96075817 T G het 205.23 38 22.42 6.62 +chr5 96101066 96101066 T - het 129.91 51 14.69 3.17 +chr5 96116113 96116113 T - unknown 83.15 43 18.86 2.87 +chr5 96117579 96117579 G A het 115.99 70 39.43 7.73 +chr5 96271445 96271445 C A unknown 34.08 80 34.66 1.62 +chr5 96363407 96363407 C T het 817.58 80 33.47 10.22 +chr5 97912244 97912244 C G unknown 181.70 154 13.11 1.50 +chr5 98240832 98240832 A G unknown 37.23 139 26.24 0.56 +chr5 98860049 98860049 A C unknown 113.96 172 13.56 0.83 +chr5 99725815 99725815 T A het 102.90 251 12.87 0.41 +chr5 99897684 99897684 A T het 44.28 16 21.73 4.43 +chr5 101794062 101794062 T - het 363.57 76 20.53 5.27 +chr5 101813238 101813238 T C unknown 50.82 11 26.58 25.41 +chr5 102891695 102891695 A G hom 2994.98 116 30.52 25.82 +chr5 107197423 107197423 A C het 52.56 67 31.10 1.35 +chr5 107197449 107197449 G A het 101.10 65 33.02 1.56 +chr5 107703447 107703449 AAG - het 298.03 87 34.90 11.04 +chr5 108382742 108382742 T C unknown 293.78 14 33.95 24.48 +chr5 108673064 108673064 A - het 130.62 115 33.49 2.46 +chr5 108679947 108679947 C G het 33.37 48 25.47 1.15 +chr5 108680647 108680647 C A unknown 90.90 22 24.17 7.58 +chr5 110096947 110096947 A C het 120.80 197 37.47 1.03 +chr5 110284248 110284250 TAT - het 1071.54 131 21.59 8.18 +chr5 110679657 110679657 C G het 2812.57 178 39.63 15.80 +chr5 110782274 110782274 C A hom 176.53 13 26.83 13.58 +chr5 112045831 112045831 T C unknown 82.22 9 20.71 13.70 +chr5 112181379 112181379 C G hom 47.01 4 26.30 23.50 +chr5 112321488 112321488 A G unknown 93 101 35.44 3.58 +chr5 112850963 112850963 G A het 442.99 119 32.49 11.07 +chr5 114506852 114506852 G T het 406.59 206 37.44 1.97 +chr5 114847770 114847770 C A unknown 81 37 29.80 2.70 +chr5 115469668 115469668 T C unknown 183.22 35 30.81 7.33 +chr5 115783279 115783279 A C het 1021.58 161 27.73 6.35 +chr5 115815649 115815649 G C unknown 73.67 12 28.10 12.28 +chr5 115827356 115827356 C T unknown 1771.56 151 36.72 15.96 +chr5 115898740 115898740 A T het 139.65 65 24.96 2.15 +chr5 116052003 116052003 T C hom 439.88 199 10.81 2.21 +chr5 118503351 118503351 C A het 108.83 63 32.19 4.95 +chr5 118507769 118507769 A C het 298.83 46 33.02 12.45 +chr5 118814580 118814580 C A unknown 42.57 147 23.50 1.12 +chr5 118837834 118837834 A G het 1205.57 118 33.86 10.22 +chr5 118861042 118861042 T A unknown 34.08 71 33.19 1.79 +chr5 119016810 119016810 A C het 30.32 62 28.06 0.71 +chr5 121297818 121297818 T C het 37.76 101 34.43 0.73 +chr5 121405810 121405810 A C unknown 61.56 348 38.86 0.41 +chr5 122515906 122515906 T A het 729.58 200 31.81 3.65 +chr5 122722368 122722368 T - het 292.59 66 32.35 4.43 +chr5 124036810 124036810 A G unknown 43.57 264 37.18 0.35 +chr5 125808995 125808995 G T het 53.47 101 35.60 1.27 +chr5 125906607 125906607 A G unknown 602.99 164 33.52 13.11 +chr5 126140350 126140350 A G unknown 205.46 21 36.29 15.80 +chr5 126387670 126387670 T G het 91.77 91 36.99 1.08 +chr5 126732244 126732244 G T unknown 32.58 184 30.90 0.39 +chr5 126847625 126847625 A C unknown 61.81 93 15.55 1.32 +chr5 126860580 126860580 T G het 48.93 127 25.35 0.92 +chr5 127645713 127645713 G T het 553.58 174 35.45 3.18 +chr5 128994340 128994340 C T het 417.58 146 29.73 2.86 +chr5 129477415 129477416 AG - hom 344.63 34 20.40 10.77 +chr5 129520259 129520259 A T unknown 33.78 125 32.40 0.53 +chr5 130344258 130344258 A C unknown 41.80 28 31.58 3.80 +chr5 130721287 130721287 G A het 76.48 108 39.29 1.14 +chr5 130767121 130767121 T C unknown 425.79 70 39.33 8.52 +chr5 131649567 131649567 A G het 100.05 75 28.79 2.27 +chr5 131796067 131796067 G A hom 69.99 10 24.37 23.33 +chr5 131819970 131819970 T C unknown 476.67 59 34.79 11.09 +chr5 131944789 131944789 T A hom 211.15 51 22.56 4.14 +chr5 132046590 132046590 C T het 217.99 155 33.96 8.07 +chr5 132424046 132424046 T C unknown 121.15 43 33.30 10.10 +chr5 132433049 132433049 G T unknown 659.99 292 37.96 9.43 +chr5 133477951 133477951 G A unknown 156.99 129 26.38 4.36 +chr5 133745694 133745694 C A het 42.31 89 21.83 0.77 +chr5 133873577 133873577 C T unknown 710.57 63 38.21 15.12 +chr5 134077274 134077274 A G het 216.95 52 26.37 4.62 +chr5 134190750 134190750 C T unknown 45.14 243 29.15 0.38 +chr5 134235119 134235119 A T unknown 34.38 78 32.19 1.27 +chr5 135215703 135215703 T C het 258.58 124 32.70 2.09 +chr5 135396468 135396468 T A hom 183.12 88 25.18 5.55 +chr5 137426499 137426499 C G unknown 78.99 164 37.21 2.32 +chr5 137506434 137506434 G A hom 59.06 26 27.24 7.38 +chr5 137664108 137664108 G C het 34.35 136 33.90 0.41 +chr5 137802861 137802861 T G het 129.20 144 32.39 1.23 +chr5 137844274 137844274 A G het 323.59 103 23.45 3.14 +chr5 138253486 138253486 A G het 171.61 378 26.65 0.78 +chr5 138723673 138723673 C T unknown 60.09 60 26.42 4.29 +chr5 138732579 138732579 C T hom 1215.85 64 32.03 19.00 +chr5 138775124 138775124 G A het 46.23 53 27.12 0.87 +chr5 139215386 139215386 A C het 1341.55 202 35.62 13.83 +chr5 139239569 139239569 G A het 219.58 76 25.26 2.89 +chr5 139251460 139251460 C G unknown 31 75 40.38 1.63 +chr5 139747071 139747071 G A unknown 61.35 67 28.27 1.02 +chr5 139892352 139892352 C T het 246.34 82 18.65 3.00 +chr5 139908328 139908328 T C het 102.94 194 35.65 0.71 +chr5 140176325 140176325 G C het 116.79 109 18.23 1.07 +chr5 140182834 140182834 T G unknown 66.69 102 22.41 1.13 +chr5 140213928 140213928 G A het 44.68 122 31.89 0.77 +chr5 140248539 140248539 C T hom 1132.94 47 36.73 24.11 +chr5 140250816 140250816 C G unknown 58.02 116 27.91 0.91 +chr5 140255792 140255792 C A hom 7950.01 286 35.91 27.80 +chr5 140263345 140263345 C A het 79.22 115 15.16 0.69 +chr5 140431608 140431608 T G unknown 41 170 37.12 0.91 +chr5 140480355 140480355 A G het 1175.79 172 34.65 9.64 +chr5 140514997 140514997 T A het 150.82 125 37.38 1.71 +chr5 140516712 140516712 A - het 156.54 85 22.25 1.84 +chr5 140553094 140553094 C A unknown 141.79 216 35.17 0.89 +chr5 140567541 140567541 G T het 484.99 147 15.93 3.30 +chr5 140590071 140590071 T C hom 41.27 92 11.47 0.88 +chr5 140621108 140621108 A C unknown 56.30 47 10.40 1.94 +chr5 140626368 140626368 G C het 104.29 121 24.54 1.15 +chr5 140626726 140626726 T G hom 48.09 89 7.78 1.09 +chr5 140724638 140724638 A C het 1368.58 365 34.37 3.75 +chr5 140772392 140772392 A G het 191.59 122 34.28 1.57 +chr5 140792940 140792940 C G unknown 44.70 208 16.03 0.41 +chr5 140890454 140890454 G T unknown 52.99 155 32.83 1.36 +chr5 141023873 141023873 A G unknown 34.63 85 31.40 0.69 +chr5 141049235 141049235 G A unknown 35.11 129 31.66 1.13 +chr5 141331194 141331194 C T unknown 70.98 82 37.99 1.16 +chr5 141336264 141336264 G T het 1210.79 179 36.49 9.39 +chr5 141381603 141381603 G A het 163.41 75 35.58 2.18 +chr5 142595680 142595680 G T het 37.92 78 29.98 1.40 +chr5 143543677 143543677 G A het 51.65 83 34.03 1.40 +chr5 145198805 145198805 T C unknown 400.58 25 30.82 23.56 +chr5 145379913 145379913 G C het 174.95 37 26.38 5.64 +chr5 145435720 145435720 G T unknown 51.71 202 37.21 1.10 +chr5 145483962 145483962 A G het 46.23 56 28.15 1.28 +chr5 145515346 145515346 C T het 58.78 16 34.43 4.90 +chr5 145643145 145643145 A G unknown 42.57 161 28.29 2.37 +chr5 145719251 145719251 C A het 184.41 133 34.26 1.39 +chr5 145834806 145834806 G A het 114.79 171 37.17 0.96 +chr5 146086904 146086904 T C het 108.67 204 13.01 0.53 +chr5 146429710 146429710 C T hom 44.01 5 21.94 14.67 +chr5 147016592 147016592 G T het 158.63 228 31.81 0.70 +chr5 147480007 147480007 A G het 342.55 191 36.46 4.03 +chr5 147593497 147593497 C A hom 6859.01 200 37.75 34.30 +chr5 147795717 147795717 T G hom 124.36 47 24.97 4.44 +chr5 147813123 147813123 C T unknown 131.64 272 34.50 1.12 +chr5 147819177 147819177 G A unknown 43.69 63 18.03 0.69 +chr5 147819366 147819366 T C unknown 1479.56 129 37.85 14.51 +chr5 148206473 148206473 G C unknown 606.79 98 31.69 7.68 +chr5 148407762 148407762 C G het 43.99 323 35.14 0.54 +chr5 148431709 148431709 A T het 408.58 141 37.21 2.90 +chr5 148622240 148622240 C G het 368.58 71 32.24 5.19 +chr5 148679239 148679239 T A unknown 75.33 94 30.36 1.57 +chr5 148886785 148886785 T A het 139.20 51 24.42 3.87 +chr5 148925093 148925093 T G het 125.97 78 16.60 2.10 +chr5 149008467 149008467 C A unknown 193.99 91 28.49 10.21 +chr5 149210493 149210493 C A het 183.42 111 31.69 1.65 +chr5 149216366 149216366 G T unknown 41.62 169 33.46 0.42 +chr5 149245751 149245751 A C het 39.53 95 36.11 0.79 +chr5 149283242 149283242 T A unknown 32 399 35.06 0.49 +chr5 149360877 149360877 T C het 2206.59 116 32.83 19.02 +chr5 149374932 149374932 T C hom 7496.01 249 38.73 30.10 +chr5 149510152 149510152 C A het 230.58 150 23.12 1.54 +chr5 149576573 149576573 C T unknown 169.12 41 25.46 4.83 +chr5 149584509 149584509 A G het 37.38 74 27.49 0.51 +chr5 149585012 149585012 T C unknown 30.99 97 29.83 1.48 +chr5 149755357 149755357 G T het 121.48 132 26.69 1.29 +chr5 149767509 149767509 A G het 140.63 95 29.20 1.48 +chr5 149785775 149785776 GT - het 390.56 60 21.31 6.51 +chr5 149921251 149921251 G C hom 1977.54 76 31.08 26.02 +chr5 150040524 150040524 C T unknown 61.22 4 24.71 15.30 +chr5 150075348 150075348 T G het 273.46 41 28.37 6.67 +chr5 150175566 150175566 T A unknown 69.36 99 28.09 1.54 +chr5 150406592 150406592 C G het 106.87 124 23.12 1.14 +chr5 150413318 150413318 G T het 69.62 50 32.51 3.87 +chr5 150565724 150565724 C T het 702.99 161 33.20 15.28 +chr5 150714926 150714926 C G unknown 43.12 78 27.16 1.05 +chr5 150847455 150847455 G A unknown 108.92 101 25.13 1.47 +chr5 150885568 150885568 A C het 204.79 218 37.35 1.29 +chr5 150914119 150914119 C T het 84.88 129 33.89 0.95 +chr5 151177040 151177040 A C hom 131.68 73 21.27 1.80 +chr5 151202295 151202295 A C het 289.58 198 34.52 1.46 +chr5 151239442 151239442 A C het 87.80 255 35.88 0.46 +chr5 153432970 153432970 C T hom 4083.01 223 39.01 18.31 +chr5 153833018 153833018 G C het 204.26 163 35.03 1.78 +chr5 153856996 153856996 T A unknown 451.79 97 36.43 6.45 +chr5 154179360 154179360 G T unknown 43.23 160 31.26 1.08 +chr5 154306972 154306972 T C hom 1830.06 75 33.49 24.40 +chr5 154308307 154308307 G A hom 2465.13 83 31.77 29.70 +chr5 154335837 154335837 G T het 37.24 29 29.04 2.66 +chr5 156482459 156482459 G T hom 887.94 82 22.27 10.83 +chr5 156753143 156753143 A T unknown 37.59 165 38.64 0.43 +chr5 156816312 156816312 G T het 49.25 89 27.03 0.55 +chr5 157073791 157073791 T A het 49.23 113 34.53 0.70 +chr5 157106794 157106794 C T het 348.60 54 28.72 6.46 +chr5 157218993 157218993 T A het 153.23 192 37.16 1.21 +chr5 157616085 157616085 A G het 58.59 42 34.25 2.79 +chr5 158630642 158630642 T C het 42.98 64 15.34 0.91 +chr5 159623092 159623092 C T hom 94.30 7 26.59 13.47 +chr5 159640652 159640652 G A hom 963.82 78 24.29 12.36 +chr5 159820895 159820895 G T het 223.70 89 29.76 2.51 +chr5 159834725 159834725 A T het 324.58 144 32.51 2.25 +chr5 160047250 160047250 C A unknown 42.42 64 30.66 1.09 +chr5 160047587 160047587 A G het 67.93 47 28.43 1.45 +chr5 161579441 161579441 A G hom 4802.01 153 38.66 31.39 +chr5 167254923 167254923 A G unknown 37.01 9 15.34 7.40 +chr5 167689030 167689030 T C het 53.98 125 33.38 0.55 +chr5 167835766 167835766 T C het 412.71 32 31.82 12.90 +chr5 167919726 167919726 A G hom 1466.57 205 35.01 7.15 +chr5 167980284 167980284 G A unknown 43.69 44 21.50 3.64 +chr5 168100010 168100010 C G het 977.60 66 33.62 16.86 +chr5 168271627 168271627 T G unknown 230.17 89 33.75 3.29 +chr5 168690708 168690708 T G het 54.58 92 29.86 1.05 +chr5 169138909 169138909 G A unknown 293.99 124 36.17 10.14 +chr5 169188471 169188472 GG - het 278.65 89 23.50 3.13 +chr5 169506044 169506044 G T unknown 118.80 127 21.15 1.83 +chr5 169507174 169507174 G T het 426.58 185 33.65 2.31 +chr5 169509797 169509797 A G het 216.94 80 26.48 3.68 +chr5 169567721 169567721 T A hom 37.25 61 15.77 1.24 +chr5 169688138 169688138 A G het 53.22 106 31.67 0.90 +chr5 169702444 169702444 C A het 93.81 143 25.66 0.85 +chr5 169720333 169720333 A G unknown 53.84 71 30.05 1.02 +chr5 169796021 169796021 G T hom 35.02 5 27.45 11.67 +chr5 170216245 170216245 T G het 201.41 119 35.27 1.69 +chr5 170324374 170324374 T A unknown 64.83 18 14.93 5.89 +chr5 170338059 170338059 C G unknown 30.13 98 18.01 0.44 +chr5 170847464 170847464 C G het 156.04 102 24.73 2.36 +chr5 171706322 171706322 G T unknown 36.56 111 33.42 0.79 +chr5 172571509 172571509 A C het 30.11 43 24.08 1.12 +chr5 172585928 172585928 C - hom 734.30 25 30.99 29.37 +chr5 174156168 174156168 T C hom 3173.98 123 29.61 25.80 +chr5 174869413 174869413 G T het 164.59 171 37.09 0.96 +chr5 174937202 174937202 C G het 80.56 64 31.20 1.26 +chr5 174943694 174943694 T C het 68.20 75 26.23 1.26 +chr5 175772092 175772092 G C unknown 191.95 96 36.39 2.70 +chr5 175916083 175916083 T C het 215.14 57 40.07 13.45 +chr5 175933707 175933707 C T het 61.02 90 16.87 1.42 +chr5 176024098 176024098 A T unknown 47.23 35 26.48 1.82 +chr5 176306889 176306889 G C het 101.87 38 25.34 2.68 +chr5 176318296 176318296 T A het 217.61 124 35.95 1.75 +chr5 176517979 176517979 G A het 78.61 110 30.27 1.40 +chr5 176523861 176523861 C T hom 43.22 9 23.40 10.80 +chr5 176638960 176638960 T G het 39.21 134 30.69 0.56 +chr5 176759087 176759087 T G het 36.63 39 28.81 1.74 +chr5 176815345 176815345 A T het 72.72 96 24.72 1.04 +chr5 176824836 176824836 C G het 299.79 112 29.67 3.66 +chr5 176938971 176938971 A T het 41.25 30 26.64 1.79 +chr5 177547730 177547730 T G unknown 41.30 25 26.35 3.75 +chr5 177574421 177574421 C T hom 136.11 13 19.69 15.12 +chr5 177580599 177580599 G A unknown 61.67 98 23.50 1.23 +chr5 177649428 177649428 A C het 252.60 113 31.61 2.24 +chr5 177683011 177683011 C T hom 428.01 25 26.71 17.12 +chr5 177947771 177947771 T C unknown 146.17 6 36.43 29.23 +chr5 178267853 178267853 C A hom 48.54 19 18.26 4.41 +chr5 178337414 178337414 G A het 60.48 112 28.23 0.75 +chr5 178373484 178373484 T G het 263.58 155 22.49 1.70 +chr5 178503640 178503640 C T unknown 567.79 116 30.03 6.60 +chr5 178509565 178509565 C T unknown 67.25 23 13.57 3.36 +chr5 178894246 178894246 G A unknown 100.35 13 15.24 8.36 +chr5 179025789 179025789 G A unknown 452.99 214 33.07 9.85 +chr5 179036390 179036390 A C unknown 78.07 113 30.49 2.00 +chr5 179042010 179042010 C A het 120.80 145 31.88 1.23 +chr5 179153797 179153797 C T het 1231.79 151 36.27 12.44 +chr5 179225604 179225604 A T unknown 74.78 67 29.23 2.20 +chr5 179290845 179290845 T G het 795.55 158 33.29 10.61 +chr5 179547917 179547917 C A het 45.25 16 19.49 6.46 +chr5 179732350 179732350 A G unknown 36.77 8 20.83 18.39 +chr5 179961304 179961304 G A het 109.87 38 30.92 2.89 +chr5 179980527 179980527 A G hom 1651.69 67 33.80 24.65 +chr5 180035880 180035880 G A unknown 93.35 28 18.54 4.24 +chr5 180047863 180047863 C G hom 494.25 30 26.65 16.48 +chr5 180051118 180051118 A T het 49.01 39 34.23 7.00 +chr5 180276695 180276695 T G het 46.61 149 27.35 0.79 +chr5 180432220 180432220 G C het 747.58 82 32.37 9.12 +chr5 180472498 180472498 C T unknown 130.14 121 33.14 1.97 +chr5 180625672 180625672 T C unknown 1367.79 126 34.24 14.10 +chr5 180669136 180669136 C T unknown 645.79 99 38.35 9.64 +chr5 180710476 180710476 G T unknown 38.06 49 16.47 1.52 +chr6 576902 576902 T C het 315.99 121 33.90 11.29 +chr6 1726623 1726623 C T het 1224.28 95 27.85 12.89 +chr6 2678597 2678597 A G het 1702.58 166 33.32 10.26 +chr6 2766727 2766727 A G unknown 82.70 6 36.86 27.57 +chr6 2785055 2785055 G A unknown 42.37 18 32.44 14.12 +chr6 3106328 3106328 T A het 117.09 77 27.22 1.52 +chr6 3261979 3261979 G A unknown 50.01 7 21.50 12.50 +chr6 3298568 3298568 C T unknown 163.99 49 24.46 4.20 +chr6 4033065 4033065 A G het 822.35 69 31.86 11.92 +chr6 4044297 4044297 G T unknown 361.62 65 32.50 8.04 +chr6 4119516 4119516 A G het 1267.80 75 31.47 16.90 +chr6 6152007 6152007 C T het 1653.57 112 34.82 14.76 +chr6 6167920 6167920 A G het 72.03 37 20.50 2.77 +chr6 6248523 6248523 G T het 299.58 119 38.60 2.52 +chr6 7226959 7226959 C T unknown 79 83 23.40 3.29 +chr6 7555922 7555922 G T het 32.01 70 29.78 0.60 +chr6 7883515 7883516 AA - het 1753.54 129 30.00 13.59 +chr6 7987191 7987191 T A unknown 57.24 178 17.37 0.64 +chr6 7988189 7988189 T C het 499.99 222 20.82 8.47 +chr6 9977735 9977735 C T het 181.58 138 22.19 1.32 +chr6 10514910 10514910 C T hom 392.75 35 26.75 11.22 +chr6 10556659 10556659 G C het 40.91 106 34.01 0.39 +chr6 10697517 10697517 G T unknown 186 237 35.11 1.01 +chr6 10764727 10764727 A G hom 1975.59 115 28.25 17.18 +chr6 10804017 10804017 A G het 51.82 159 33.07 0.48 +chr6 10875238 10875238 T A het 227.04 58 36.79 11.95 +chr6 10990751 10990751 T G het 538.55 114 36.47 9.97 +chr6 12123964 12123964 A G het 107.20 181 30.31 0.78 +chr6 12124043 12124043 C A het 272.12 69 28.78 4.32 +chr6 12749975 12749975 A C het 234.79 63 32.24 5.10 +chr6 14131804 14131804 G A unknown 1403.79 201 32.54 9.18 +chr6 15504589 15504589 T C het 101.33 17 36.53 11.26 +chr6 15511642 15511642 C T het 422.58 93 28.39 4.54 +chr6 15524884 15524884 C T het 49.54 92 33.89 0.66 +chr6 16145613 16145613 G T het 66.12 66 28.95 4.41 +chr6 18213834 18213834 T G het 314.63 159 29.84 1.98 +chr6 18364976 18364976 C G het 53.21 64 15.72 1.13 +chr6 20483230 20483230 A G unknown 361.99 114 34.60 13.41 +chr6 20722750 20722750 A G het 507.79 75 25.74 6.77 +chr6 22214442 22214442 G A hom 45.30 20 26.02 2.66 +chr6 22569974 22569974 T G het 174.63 90 28.74 1.94 +chr6 24437017 24437017 T C het 37.93 107 32.57 0.50 +chr6 24559281 24559281 A G unknown 101.99 114 34.45 4.64 +chr6 24581283 24581283 G A het 796.55 136 40.72 10.91 +chr6 24828372 24828372 G T het 94.55 66 22.96 2.15 +chr6 25109858 25109858 T C het 151.93 42 23.62 4.11 +chr6 25280119 25280119 C A unknown 196.57 125 24.89 1.57 +chr6 25452223 25452223 T - het 221.50 55 21.39 5.15 +chr6 25691362 25691362 C T het 438.99 144 38.05 12.19 +chr6 25773809 25773809 A G unknown 1444.79 172 38.40 11.75 +chr6 25913624 25913624 A C het 540.58 165 31.41 3.28 +chr6 26123889 26123891 CCA - unknown 93.05 110 14.24 1.48 +chr6 26124722 26124722 A G het 45.33 121 14.90 0.37 +chr6 26234619 26234619 A G unknown 31.70 112 32.89 0.45 +chr6 26250466 26250466 T G unknown 97.16 153 14.52 0.89 +chr6 26250763 26250763 T A unknown 38.08 137 19.66 1.27 +chr6 26271505 26271505 C T het 34.69 113 17.43 0.43 +chr6 26370605 26370605 T C het 81.32 191 9.27 0.59 +chr6 26423317 26423317 G A het 127.87 246 17.00 0.69 +chr6 26430981 26430981 A G het 256.80 93 26.59 4.59 +chr6 26449050 26449050 T A het 56.96 96 30.95 0.59 +chr6 26505135 26505135 C T het 2067.72 101 32.85 20.47 +chr6 26598188 26598188 A G unknown 1258.56 91 35.57 18.78 +chr6 26865256 26865256 T G hom 1138.20 104 19.21 10.94 +chr6 26867031 26867031 A G het 1008.34 251 13.61 4.02 +chr6 27215716 27215716 C T het 31.87 77 23.56 0.54 +chr6 27277084 27277084 C T het 59.14 91 29.28 0.65 +chr6 27705522 27705522 G A het 473.58 194 20.73 2.44 +chr6 27858418 27858418 C A het 79.08 114 21.17 1.46 +chr6 28097193 28097193 G A unknown 36.01 84 35.65 1.64 +chr6 28120313 28120313 A C het 38.06 9 25.42 5.44 +chr6 28134582 28134582 C T unknown 114.99 59 30.60 7.19 +chr6 28227287 28227287 C A het 108.95 93 26.64 1.17 +chr6 28350390 28350390 A C het 167.93 151 34.17 1.11 +chr6 28499587 28499587 T A unknown 32.99 353 33.48 0.45 +chr6 28501822 28501822 A C het 93.40 179 31.51 0.77 +chr6 28879411 28879411 C G het 73.67 65 24.51 1.13 +chr6 28938084 28938084 T C het 68.33 133 10.69 0.66 +chr6 29713430 29713430 C T het 59.87 206 13.48 0.38 +chr6 29759872 29759872 C A het 254.84 118 18.80 2.65 +chr6 29785132 29785132 T C hom 38.38 14 22.90 4.26 +chr6 29917673 29917673 G A het 102.02 45 32.12 10.20 +chr6 29974726 29974726 T C het 35.99 61 22.59 0.59 +chr6 29974822 29974822 C G hom 68.98 57 16.00 1.77 +chr6 30037066 30037066 G A het 227.19 103 20.59 2.88 +chr6 30136012 30136012 G T het 108.09 44 33.02 4.16 +chr6 30154928 30154928 G A hom 48.01 7 19.04 12.00 +chr6 30297114 30297114 T G het 456.58 243 29.19 1.88 +chr6 30457329 30457329 T C het 53.56 130 35.69 0.78 +chr6 30647065 30647065 A C het 198.93 51 21.05 4.74 +chr6 30709428 30709428 C T het 395.58 211 28.99 1.87 +chr6 30782436 30782436 C G unknown 96.42 73 28.92 1.79 +chr6 30858857 30858857 C T het 282.99 149 37.24 9.76 +chr6 30859799 30859799 G T het 60.55 140 25.45 0.84 +chr6 30877760 30877760 A C het 466.99 231 37.54 8.98 +chr6 30882634 30882634 C T het 1172.58 121 34.28 9.69 +chr6 30887635 30887635 A G unknown 39.22 162 26.27 0.50 +chr6 30893226 30893226 C G het 388.58 47 27.93 8.27 +chr6 30893618 30893618 A C unknown 71.80 111 32.35 0.83 +chr6 30919453 30919453 T G het 37.35 169 17.46 0.22 +chr6 30920890 30920890 G A het 1220.58 98 34.60 12.45 +chr6 31113106 31113106 A G hom 1544.57 93 33.00 16.61 +chr6 31113326 31113326 G A unknown 167.99 91 32.36 8.84 +chr6 31122126 31122126 G C hom 1315.56 104 33.78 17.78 +chr6 31122400 31122400 T C unknown 143.81 158 27.29 1.92 +chr6 31130330 31130330 T A het 73.09 88 22.98 1.78 +chr6 31133943 31133943 C A het 262.85 22 32.89 11.95 +chr6 31170713 31170713 T C hom 696.56 84 31.54 12.22 +chr6 31237048 31237048 A G hom 1833.57 120 25.86 15.28 +chr6 31244654 31244654 A G hom 472.61 42 28.52 11.25 +chr6 31245309 31245309 C A het 405.56 140 19.85 5.20 +chr6 31322175 31322175 C T hom 478.63 63 21.28 7.60 +chr6 31322487 31322487 G A het 232.99 119 26.46 8.96 +chr6 31323065 31323065 G C het 37.99 103 19.67 1.90 +chr6 31334601 31334601 T C hom 119.46 178 14.64 1.49 +chr6 31348321 31348321 G A hom 94.76 12 16.58 11.85 +chr6 31348403 31348403 G T het 52.02 15 16.59 4.73 +chr6 31349922 31349922 C T het 153 59 31.21 10.93 +chr6 31474200 31474200 G T het 91.84 73 29.75 1.26 +chr6 31602076 31602076 C G het 38.09 185 22.44 0.43 +chr6 31605069 31605069 T G het 66.55 196 22.06 0.44 +chr6 31609261 31609261 G A het 85.30 135 20.43 0.82 +chr6 31658277 31658277 T C unknown 120.21 136 27.85 1.62 +chr6 31695024 31695024 G T het 427.58 163 25.05 2.62 +chr6 31734508 31734508 C T het 78.96 114 27.52 0.69 +chr6 31746800 31746800 C T het 89.34 76 30.03 1.18 +chr6 31749283 31749283 A G het 80.43 48 29.88 2.06 +chr6 31762606 31762606 A C het 143.25 88 25.26 1.63 +chr6 31839309 31839309 C T hom 1875.99 57 32.40 32.91 +chr6 31851579 31851579 T A het 70.70 103 19.16 0.84 +chr6 31855977 31855977 C A het 175.87 74 25.44 2.38 +chr6 31864547 31864547 G T het 113.99 114 34.33 4.38 +chr6 31868995 31868995 C G het 75.16 44 22.24 2.42 +chr6 31913141 31913141 C T unknown 56.68 86 32.18 1.26 +chr6 31931681 31931681 C T het 129.67 240 29.41 1.08 +chr6 31937253 31937253 G C het 168.42 87 33.20 1.94 +chr6 32007933 32007933 C A unknown 40.23 63 8.23 1.39 +chr6 32015886 32015886 C G het 264.59 65 24.58 4.07 +chr6 32029215 32029215 T G het 39.32 63 13.47 0.76 +chr6 32039887 32039887 C A het 187.86 80 27.10 2.35 +chr6 32046827 32046827 G T unknown 72.96 47 21.84 2.52 +chr6 32096001 32096001 C A unknown 512.51 46 22.60 13.49 +chr6 32184574 32184574 G A het 140 61 34.88 8.75 +chr6 32299908 32299908 G C het 499.99 225 34.54 10.87 +chr6 32303848 32303848 G A het 293.11 23 38.29 15.43 +chr6 32304404 32304404 T G unknown 63.38 57 35.73 2.76 +chr6 32304502 32304502 C G hom 52.32 22 21.78 2.62 +chr6 32330184 32330184 C A hom 38.77 7 19.44 12.92 +chr6 32339548 32339548 G A het 2313.84 98 32.77 23.61 +chr6 32411376 32411376 T G unknown 377.90 54 33.17 13.03 +chr6 32427467 32427467 A G het 96.99 73 33.41 5.71 +chr6 32486546 32486546 C T unknown 62.97 69 12.82 0.98 +chr6 32489940 32489940 G C hom 123.35 31 17.60 4.93 +chr6 32521785 32521785 T G het 1582.55 162 19.21 9.77 +chr6 32522408 32522408 G T unknown 302 104 18.93 10.41 +chr6 32546914 32546914 C T unknown 43.09 133 25.84 1.03 +chr6 32546929 32546929 A - unknown 585.75 105 20.98 7.51 +chr6 32548628 32548628 G A het 164.86 330 15.09 0.50 +chr6 32550272 32550272 A G het 823.83 42 28.89 19.61 +chr6 32551939 32551939 G T het 173.72 107 12.12 1.62 +chr6 32552072 32552072 T G het 862.79 148 22.72 7.84 +chr6 32552183 32552183 - C hom 264.81 20 19.17 15.58 +chr6 32609015 32609015 C T unknown 722.79 105 27.99 9.39 +chr6 32610044 32610044 T C unknown 255.79 112 23.08 3.16 +chr6 32610445 32610445 G A unknown 243.05 48 15.16 6.08 +chr6 32610636 32610637 TG - unknown 196.80 54 11.78 7.87 +chr6 32629341 32629341 C A het 37.30 27 25.69 1.96 +chr6 32713917 32713917 G T unknown 30.76 192 13.00 0.32 +chr6 32725075 32725075 C G hom 50.65 41 18.12 2.11 +chr6 32809463 32809463 T G het 1033.58 190 31.81 5.44 +chr6 32815811 32815811 G C hom 47.82 39 16.13 1.23 +chr6 33037768 33037768 G A het 59.07 49 34.30 3.69 +chr6 33041226 33041226 C T het 360.99 290 34.95 6.02 +chr6 33052958 33052958 C T het 76.99 232 19.20 2.03 +chr6 33134392 33134392 C A het 96.88 42 26.84 2.31 +chr6 33137840 33137840 C A het 173.82 196 21.70 1.21 +chr6 33162450 33162450 G T het 186.93 63 21.71 2.97 +chr6 33179546 33179546 T A het 133.74 171 29.32 1.54 +chr6 33410996 33410996 A G unknown 80.55 136 25.00 1.03 +chr6 33411035 33411035 T C unknown 36.79 128 33.94 0.55 +chr6 33641380 33641380 G A unknown 214.11 172 33.29 1.56 +chr6 33648228 33648228 C T hom 2626.58 113 33.12 23.24 +chr6 33657903 33657903 C A het 144.59 123 37.90 1.18 +chr6 33752069 33752069 C G het 119.85 105 38.64 1.54 +chr6 34214348 34214348 C T unknown 214.79 62 33.06 4.47 +chr6 34214670 34214670 A G het 74.98 42 25.51 2.50 +chr6 34544413 34544413 G A unknown 53.41 261 15.85 0.41 +chr6 34789668 34789668 C A het 50.52 185 34.11 0.38 +chr6 34831866 34831866 G A unknown 1514.79 187 40.84 11.22 +chr6 34855677 34855677 C T het 63.55 139 25.10 0.99 +chr6 35203203 35203203 T G hom 2185.12 81 32.77 26.98 +chr6 35258478 35258478 A C het 204.58 133 22.96 1.54 +chr6 35392436 35392436 C G het 31.62 62 36.36 1.32 +chr6 35392484 35392484 G T unknown 156.19 63 29.11 3.12 +chr6 35478534 35478534 - CC het 396.12 63 20.93 6.29 +chr6 35544804 35544804 G A het 121.55 153 41.94 1.50 +chr6 35554865 35554865 T A het 66.47 330 39.44 0.52 +chr6 35765068 35765068 T C unknown 430.99 78 35.27 19.59 +chr6 35824992 35824992 G A unknown 261.79 140 35.17 2.59 +chr6 35995897 35995897 A G het 60.24 53 16.45 1.94 +chr6 36027228 36027228 T C het 79.45 61 33.35 1.42 +chr6 36178066 36178066 T C het 375.60 157 34.16 2.39 +chr6 36287238 36287238 G A het 61.19 123 26.50 0.63 +chr6 36296514 36296514 C T het 3722.01 182 34.71 20.45 +chr6 36449516 36449516 T A unknown 32.81 122 35.18 0.56 +chr6 36566752 36566752 T G het 190.61 145 28.38 1.31 +chr6 36567544 36567544 C T het 86.92 144 26.91 0.87 +chr6 36710269 36710269 A G het 528.79 90 36.23 7.89 +chr6 37138969 37138969 C A het 76.56 173 34.05 0.91 +chr6 37605160 37605160 A C het 40.93 79 26.85 0.52 +chr6 37611796 37611796 G A unknown 60.99 68 30.76 4.69 +chr6 38548286 38548286 T A unknown 76.39 27 21.24 3.64 +chr6 38885011 38885011 A - het 1246.54 89 32.54 14.01 +chr6 39040654 39040654 A C het 1403.58 165 28.56 8.51 +chr6 39267447 39267447 C T het 272.72 211 32.83 1.29 +chr6 39865095 39865095 T A unknown 59.56 174 33.73 0.82 +chr6 39893554 39893554 T C het 68.82 116 21.26 0.78 +chr6 41254423 41254423 T C het 992.62 86 27.96 11.54 +chr6 41621625 41621625 G A unknown 41.26 16 17.79 8.25 +chr6 41655371 41655371 A G het 98.21 79 33.49 1.40 +chr6 41721725 41721725 T C unknown 114.62 88 30.20 1.59 +chr6 41903742 41903742 C A unknown 48.15 39 24.19 2.19 +chr6 42025058 42025058 G A hom 1479.57 114 30.63 12.98 +chr6 42044896 42044896 C A het 611.58 176 32.15 3.47 +chr6 42152460 42152460 G T het 224.58 76 33.57 2.96 +chr6 42883669 42883669 C T hom 33.28 10 24.19 11.09 +chr6 42997071 42997071 C T hom 39.54 25 24.11 2.33 +chr6 43013951 43013951 A C unknown 67.22 66 23.01 1.29 +chr6 43019408 43019408 A C het 291.56 325 38.15 1.78 +chr6 43034802 43034802 T G het 413.61 195 32.19 2.12 +chr6 43038072 43038072 G T het 66.56 48 19.09 1.66 +chr6 43097049 43097049 T A hom 71.24 43 15.22 3.24 +chr6 43106476 43106476 T A het 56.97 94 33.32 0.81 +chr6 43163948 43163948 G A het 96.19 117 29.40 1.06 +chr6 43166365 43166365 T A unknown 128.10 306 35.76 0.88 +chr6 43167181 43167181 G C het 110.66 84 31.82 1.32 +chr6 43171115 43171115 C T unknown 560.99 117 38.17 18.70 +chr6 43174214 43174214 T G het 93.29 117 22.16 0.80 +chr6 43181172 43181172 T C het 200.83 147 30.22 1.70 +chr6 43188673 43188673 A T het 39.80 32 22.68 1.47 +chr6 43274055 43274055 G T het 197.08 127 33.00 2.24 +chr6 43320055 43320055 C A unknown 176.48 29 27.05 13.58 +chr6 43414065 43414065 T G het 307.58 134 34.49 2.30 +chr6 43414216 43414216 T C het 117.02 48 26.12 4.04 +chr6 43416725 43416725 C A het 158.93 104 27.49 1.53 +chr6 43487767 43487767 G A unknown 346.79 52 33.81 8.26 +chr6 43490485 43490485 T G unknown 95.93 51 30.10 2.34 +chr6 43533447 43533447 C T het 83.81 112 34.40 1.16 +chr6 43572357 43572357 G T het 90.30 152 35.91 0.82 +chr6 43591673 43591673 G C unknown 283.55 273 36.69 2.23 +chr6 43749778 43749778 T A het 39.93 93 34.39 0.85 +chr6 44116785 44116785 - C unknown 165.95 61 30.92 13.83 +chr6 44140818 44140818 C G het 419.58 68 31.84 6.17 +chr6 44197070 44197070 T A het 462.78 67 28.64 6.91 +chr6 44216545 44216545 T - het 375.76 123 28.71 3.05 +chr6 44224137 44224137 G T het 53.03 163 29.53 1.83 +chr6 44228162 44228162 G A unknown 237.87 49 25.97 5.95 +chr6 44250165 44250165 A G het 3063.61 132 30.48 23.21 +chr6 44310854 44310854 G A het 291.99 135 38.60 10.43 +chr6 44527870 44527870 A G hom 44.01 6 20.59 8.80 +chr6 45922849 45922849 C T hom 3958.01 100 40.87 39.58 +chr6 46048000 46048000 T C het 2912.58 201 40.00 14.49 +chr6 46111060 46111060 C G het 204.58 195 35.35 2.46 +chr6 46133127 46133127 G T het 42.66 122 31.31 1.07 +chr6 46656787 46656787 G A het 52.20 45 25.75 1.45 +chr6 46976717 46976717 A T het 149.86 101 32.46 1.48 +chr6 47252104 47252104 C G het 213.58 171 35.41 1.25 +chr6 47646842 47646842 A G hom 3650.01 125 32.80 29.20 +chr6 47847683 47847683 A T hom 411.30 87 25.69 6.23 +chr6 48181923 48181923 A G het 122.96 169 14.65 0.73 +chr6 49587001 49587001 T G het 147.58 187 35.86 1.87 +chr6 49700841 49700841 T - hom 443.65 77 23.39 7.78 +chr6 49754612 49754612 T C het 107.01 187 18.70 0.77 +chr6 49914048 49914048 G A unknown 605.79 86 37.12 11.65 +chr6 51774324 51774324 C A het 36.95 69 18.22 0.64 +chr6 52142547 52142547 A G het 46.43 32 16.11 1.66 +chr6 52643104 52643104 A G hom 100.85 94 11.85 1.13 +chr6 52677187 52677187 A G het 132.92 111 13.53 1.20 +chr6 52714886 52714886 A G unknown 41.99 15 16.45 4.67 +chr6 52770508 52770508 A C hom 66.25 52 16.57 1.79 +chr6 52858838 52858838 G A unknown 348.54 61 33.17 8.94 +chr6 52878637 52878637 T C het 2062.67 84 34.54 24.56 +chr6 53219673 53219673 G A unknown 774.99 77 35.70 15.20 +chr6 53365016 53365016 A T het 59.24 223 31.56 0.38 +chr6 53517228 53517228 A C unknown 44.99 66 35.58 3.21 +chr6 54191970 54191970 T A unknown 477.58 109 26.41 7.24 +chr6 54350422 54350422 G A hom 702.56 73 32.23 14.95 +chr6 54489531 54489531 T G het 140.32 157 21.72 0.89 +chr6 55304454 55304454 T A unknown 53.84 102 39.68 1.54 +chr6 56371698 56371698 A G hom 1060.74 77 29.39 13.78 +chr6 56422355 56422355 T C het 113.70 54 26.40 2.32 +chr6 56433311 56433311 C A unknown 44.65 262 33.61 0.40 +chr6 56459082 56459082 A C het 443.99 181 40.27 9.06 +chr6 56474219 56474219 T A het 135.99 136 29.21 4.39 +chr6 56499189 56499189 T C het 97.99 123 36.98 3.63 +chr6 56965418 56965418 G A unknown 582.79 152 38.11 5.35 +chr6 57246969 57246969 G A het 684.58 196 31.18 3.49 +chr6 57466969 57466969 A G het 142.22 99 38.46 1.55 +chr6 57511975 57511975 G C unknown 102.21 7 26.12 25.55 +chr6 58778922 58778922 C A hom 62.67 32 11.30 2.09 +chr6 63257354 63257354 C T het 539.58 124 28.62 4.35 +chr6 70423563 70423563 A C unknown 35.58 82 26.53 0.87 +chr6 70976541 70976541 G C het 106.40 126 35.04 0.89 +chr6 71236324 71236324 G A unknown 193.78 141 29.70 2.13 +chr6 71266425 71266425 A G het 69.10 97 31.79 1.02 +chr6 71874977 71874977 C T unknown 123.58 104 27.06 2.69 +chr6 72011644 72011644 A C het 160.80 171 34.49 1.13 +chr6 72596945 72596945 A T unknown 57.07 90 31.12 1.14 +chr6 72957768 72957768 A C het 65.99 168 24.31 0.43 +chr6 72957796 72957796 A G het 189.73 225 28.32 1.45 +chr6 73765051 73765051 A G unknown 80.60 189 17.22 0.82 +chr6 73830423 73830423 A G hom 220.16 9 30.22 24.46 +chr6 74001064 74001064 C A hom 396.42 24 36.13 23.32 +chr6 74002593 74002593 G T het 39.68 93 22.94 0.50 +chr6 74063579 74063579 G A unknown 46.01 75 29.83 1.18 +chr6 74063792 74063792 G T unknown 62.58 143 34.06 0.85 +chr6 74495257 74495257 A G hom 1354.30 38 41.04 35.64 +chr6 75848099 75848099 G T het 46.46 157 30.18 0.32 +chr6 75857572 75857572 T A het 475.58 115 32.70 4.14 +chr6 76386713 76386713 T - het 133.86 39 26.89 6.08 +chr6 79918367 79918367 T G het 155.81 70 26.65 2.23 +chr6 79944096 79944096 - AG het 1230.11 56 23.75 21.97 +chr6 80228695 80228695 C G unknown 189.11 111 33.25 2.46 +chr6 80406159 80406159 G A het 149.05 96 30.16 2.40 +chr6 80673949 80673949 C G hom 75.22 9 21.39 10.75 +chr6 85466286 85466286 A C hom 241.79 11 31.30 21.98 +chr6 87183398 87183398 C T hom 91.48 52 17.65 3.81 +chr6 88107770 88107770 C T hom 42.01 7 18.44 8.40 +chr6 88240440 88240440 G A het 48.23 97 31.97 2.19 +chr6 89790654 89790654 T G unknown 30.20 62 31.33 0.94 +chr6 89814806 89814806 G A het 44.17 72 17.71 0.61 +chr6 89889929 89889929 G A het 81.32 43 24.88 1.89 +chr6 90077882 90077882 C T het 184.84 188 32.68 1.16 +chr6 90333105 90333105 T G het 36.76 47 23.75 1.05 +chr6 90383000 90383000 A G het 35.63 84 25.00 0.87 +chr6 90426270 90426270 C T hom 1656.06 46 36.91 36.00 +chr6 90468775 90468775 C G het 84.98 13 35.95 12.14 +chr6 90482250 90482250 T A het 777.79 118 30.62 8.94 +chr6 90491362 90491362 T C het 213.60 92 30.32 2.32 +chr6 90524949 90524949 A G unknown 79 51 29.43 8.78 +chr6 90604774 90604774 A T unknown 36.99 225 32.60 1.06 +chr6 90660626 90660626 T A unknown 126.87 118 25.27 1.39 +chr6 90661342 90661342 T G unknown 47.57 145 27.18 1.36 +chr6 91864016 91864016 G C hom 48.77 9 17.70 12.19 +chr6 93982124 93982124 A G het 5610.01 234 34.32 23.97 +chr6 97053780 97053780 T A unknown 101.88 66 28.43 2.12 +chr6 97533243 97533243 T G hom 196.58 54 29.27 3.64 +chr6 99856027 99856027 T G het 333.80 229 30.90 1.71 +chr6 100062265 100062265 A C het 67.83 59 36.03 2.19 +chr6 100960553 100960553 A C het 35.14 179 34.24 0.48 +chr6 101086372 101086372 G C unknown 98.64 18 32.21 7.05 +chr6 101878714 101878714 C T unknown 123.95 44 24.11 4.77 +chr6 105178225 105178225 G T unknown 351.22 115 39.50 4.39 +chr6 105629085 105629085 T C hom 81.67 11 16.95 7.42 +chr6 105821410 105821410 C T unknown 30.99 144 32.94 1.15 +chr6 106727541 106727541 T A unknown 52.02 110 39.88 1.24 +chr6 106967664 106967664 G T unknown 83.99 192 34.52 2.33 +chr6 107003630 107003630 T G het 248.79 182 33.94 1.94 +chr6 107100146 107100146 G T het 204.79 160 14.25 1.28 +chr6 107551281 107551281 A G hom 440.62 29 27.10 15.19 +chr6 108639499 108639499 - A unknown 265.03 67 18.68 5.30 +chr6 109616930 109616930 T C unknown 105.17 43 24.02 2.45 +chr6 109635208 109635208 A T unknown 44.70 106 33.96 0.55 +chr6 109764731 109764731 A C het 187.25 77 28.36 2.43 +chr6 109815351 109815351 T C het 592.99 183 34.28 13.48 +chr6 109827967 109827967 T G het 250.58 133 34.52 1.88 +chr6 110514396 110514396 G A unknown 46 138 35.33 0.85 +chr6 110736610 110736610 T C het 311.55 101 37.46 7.79 +chr6 110746526 110746526 T C het 803.55 156 37.08 11.82 +chr6 111213927 111213927 T C unknown 82.95 177 27.00 0.60 +chr6 111320894 111320894 A T het 47.70 98 34.44 1.19 +chr6 111631172 111631172 G A het 372.58 125 25.27 2.98 +chr6 111714106 111714106 A C het 74.75 78 33.32 0.96 +chr6 111983067 111983067 C G unknown 126.80 154 27.62 1.10 +chr6 112230357 112230357 G A unknown 82.22 5 27.18 16.44 +chr6 112422154 112422154 T C het 69.30 13 33.66 9.90 +chr6 112493985 112493985 C G unknown 65.90 106 34.84 1.29 +chr6 112687011 112687011 G C unknown 101.11 79 23.32 1.71 +chr6 114378970 114378970 C T het 1946.79 240 37.04 12.17 +chr6 114405654 114405654 A T het 35.92 197 12.75 0.23 +chr6 116092134 116092134 G C unknown 386.40 36 29.85 12.46 +chr6 116427518 116427518 T G unknown 77.33 42 19.58 2.49 +chr6 116901640 116901640 G A hom 161.11 8 29.37 26.85 +chr6 117114403 117114403 G A het 2151.57 75 34.36 28.69 +chr6 117244246 117244246 T A het 89.89 105 30.89 1.15 +chr6 117711041 117711041 T C het 124.80 133 35.47 0.94 +chr6 117730819 117730819 G A unknown 1086.79 111 36.12 13.25 +chr6 117840919 117840919 T A unknown 64.86 40 24.47 2.70 +chr6 117862048 117862048 C A hom 3812.01 254 39.09 20.61 +chr6 117994407 117994407 A G het 130.70 87 34.01 1.50 +chr6 118832397 118832397 G C unknown 346 104 35.27 13.31 +chr6 119282905 119282905 C A het 117.72 87 15.99 1.35 +chr6 119522353 119522353 T C hom 1998.67 133 36.09 21.49 +chr6 121452806 121452806 T A het 61.62 103 31.55 2.20 +chr6 123038918 123038918 C T het 185.10 177 33.65 1.60 +chr6 123104781 123104781 G T het 248.60 66 29.47 3.77 +chr6 123702477 123702477 A C unknown 54.48 21 18.88 3.89 +chr6 127797179 127797179 G A hom 1830.56 120 33.40 20.12 +chr6 128176239 128176239 T A het 72.95 106 30.66 1.00 +chr6 128718599 128718599 A G het 41.92 103 23.00 0.70 +chr6 129835722 129835722 T G het 38.67 126 23.45 0.31 +chr6 129955327 129955327 T C unknown 712.80 82 33.73 12.51 +chr6 132271476 132271476 C A unknown 95.99 203 33.14 2.40 +chr6 132271586 132271586 C A hom 52.53 47 23.43 2.28 +chr6 132909894 132909894 C G het 57.44 184 35.69 0.61 +chr6 132966336 132966336 G C het 120.99 164 35.45 1.33 +chr6 133045902 133045902 A G hom 7274.01 281 33.71 25.89 +chr6 133045991 133045991 A G het 122.57 220 35.12 1.05 +chr6 133108656 133108656 C A het 100.31 64 26.71 1.73 +chr6 133136322 133136322 A T het 81.83 48 33.48 1.70 +chr6 133593944 133593944 C G het 182.03 16 20.60 15.17 +chr6 133827354 133827354 A G het 1122.58 95 35.90 11.82 +chr6 134305570 134305570 T A het 69.73 60 27.87 1.29 +chr6 135239678 135239678 A G het 153.89 104 31.98 2.02 +chr6 135263586 135263586 C A unknown 63.19 130 33.02 1.91 +chr6 135511035 135511035 T G het 53.59 118 23.80 0.97 +chr6 135518224 135518224 T G het 133.79 282 34.37 0.63 +chr6 136173173 136173173 T A het 57.90 167 35.92 0.83 +chr6 136495018 136495018 G T het 389.58 90 32.50 4.33 +chr6 136599836 136599836 G A het 1263.58 216 23.95 5.85 +chr6 136952930 136952930 T C hom 39.01 9 15.67 7.80 +chr6 137519588 137519588 A C unknown 1471.79 211 36.15 9.94 +chr6 137865194 137865194 C G het 39.83 60 19.66 1.08 +chr6 138617907 138617907 G C unknown 44.81 186 35.56 0.33 +chr6 138752068 138752068 A C het 923.58 106 32.74 8.71 +chr6 139981348 139981348 A G het 51.78 48 24.13 1.99 +chr6 142455032 142455032 G T het 54.47 108 23.87 0.73 +chr6 142487469 142487469 C A het 93.23 64 26.57 2.59 +chr6 142491584 142491584 A G het 1132.55 160 35.75 12.31 +chr6 143784164 143784164 A G het 184.72 78 29.11 2.37 +chr6 144263377 144263377 T C unknown 50.02 232 31.25 0.85 +chr6 146350573 146350573 C T unknown 71.83 59 19.07 1.44 +chr6 146755842 146755842 C A unknown 233.80 45 28.93 6.68 +chr6 147091679 147091679 A T het 47.62 138 32.28 0.51 +chr6 147646180 147646180 C A het 210.82 152 31.02 2.05 +chr6 147830030 147830030 G C het 61.63 68 29.93 0.91 +chr6 148854984 148854984 G A het 1651.79 314 33.61 7.79 +chr6 148969654 148969654 C T hom 654.56 70 28.59 13.09 +chr6 149628073 149628073 C T hom 45.01 17 12.97 4.50 +chr6 150111105 150111105 G T het 191.55 159 35.08 2.06 +chr6 150299972 150299972 G A unknown 40.19 121 14.85 0.62 +chr6 151546936 151546936 A C het 59.53 94 15.70 0.84 +chr6 151626907 151626907 C G het 255.67 119 33.21 2.15 +chr6 151670172 151670172 A C unknown 794.79 184 29.24 5.84 +chr6 151670276 151670276 A G unknown 153.83 210 33.24 0.97 +chr6 151671111 151671112 TC - het 504.54 131 17.36 3.85 +chr6 151671578 151671578 T C het 132.12 186 35.81 0.71 +chr6 152332875 152332875 G T het 146.72 141 30.63 1.04 +chr6 152476143 152476143 G T het 91.55 162 27.98 1.29 +chr6 152570415 152570415 G A het 2040.79 94 32.02 21.71 +chr6 152590261 152590261 A G het 225.69 95 29.58 2.38 +chr6 152631022 152631022 T A unknown 58.44 91 24.42 0.77 +chr6 152707063 152707063 C T het 38.29 41 34.93 2.95 +chr6 152720877 152720877 G C het 194.42 190 25.88 1.43 +chr6 152826354 152826354 T G unknown 78.93 108 39.89 1.52 +chr6 152847335 152847335 G A het 148.99 113 33.67 5.32 +chr6 153043495 153043495 A T het 41.59 38 29.17 1.60 +chr6 153344531 153344531 T A unknown 578.79 91 35.17 8.90 +chr6 154567676 154567676 G A unknown 1237.79 144 35.73 11.57 +chr6 155485535 155485535 G A hom 1971.54 98 27.67 20.12 +chr6 155485614 155485614 G C unknown 31.99 203 36.33 0.84 +chr6 155489849 155489849 G A unknown 61.20 14 29.76 8.74 +chr6 155561691 155561691 A T unknown 53.55 125 34.41 0.80 +chr6 155561877 155561877 C T het 852.79 85 37.14 14.45 +chr6 157521844 157521844 C T unknown 101.95 103 28.91 1.23 +chr6 157521971 157521971 G C het 232.41 77 26.21 3.02 +chr6 157528777 157528777 A C het 202.84 260 32.34 1.02 +chr6 157787428 157787428 A T het 169.88 38 33.10 7.72 +chr6 157963550 157963550 T C hom 1677.56 116 33.63 19.28 +chr6 158502593 158502593 T G het 80.05 64 32.06 1.91 +chr6 158516798 158516798 C G unknown 85.79 191 32.22 0.59 +chr6 158659315 158659315 T A het 140.58 63 25.77 2.60 +chr6 159210490 159210490 C - het 349.08 129 30.80 2.71 +chr6 159657266 159657266 T G unknown 423.42 317 38.31 2.14 +chr6 160103611 160103611 T A het 183.87 95 32.09 1.94 +chr6 160163061 160163061 T G hom 91.72 21 24.91 7.06 +chr6 160165892 160165892 G C unknown 46.22 3 23.17 15.41 +chr6 160370494 160370494 C A unknown 31.03 17 17.84 4.43 +chr6 160465718 160465718 T C unknown 39.26 37 19.85 1.57 +chr6 160899644 160899644 T A unknown 134.87 217 13.17 0.86 +chr6 160953794 160953794 G C hom 31.27 38 15.52 1.56 +chr6 161137523 161137523 T A het 108.21 7 32.89 18.03 +chr6 161519395 161519395 C T het 216.65 222 27.06 0.98 +chr6 165693624 165693624 C T het 528.55 113 33.26 9.11 +chr6 165801790 165801790 G A unknown 1095.56 204 34.33 7.40 +chr6 165862393 165862393 A T het 675.59 70 28.37 9.65 +chr6 166737980 166737980 G A hom 836.91 37 37.21 22.62 +chr6 166741921 166741921 T A het 32.39 34 21.56 1.62 +chr6 166974222 166974222 T C unknown 44.25 13 19.65 7.37 +chr6 168167623 168167623 G T hom 236.63 15 27.11 15.78 +chr6 168226873 168226873 G A unknown 57.66 153 20.75 0.49 +chr6 168227263 168227263 G A unknown 174.01 48 20.80 4.05 +chr6 168265356 168265356 G T unknown 89.99 320 35.32 1.45 +chr6 168273088 168273088 T A unknown 101.98 115 28.55 1.20 +chr6 168280925 168280925 A G hom 1319.21 54 32.36 24.43 +chr6 168468186 168468186 G T hom 1462.57 105 33.75 13.93 +chr6 168689657 168689657 G A het 430.49 159 16.19 3.91 +chr6 168927130 168927130 C T unknown 51.42 125 37.86 0.95 +chr6 168947801 168947801 G T het 519.58 186 27.52 2.79 +chr6 169620246 169620246 C G unknown 111.14 183 32.40 0.83 +chr6 169632098 169632098 T G het 491.58 63 30.23 7.80 +chr6 170036627 170036627 C T het 129.40 110 27.56 1.88 +chr6 170337340 170337340 C T unknown 133.76 7 31.52 26.75 +chr6 170594088 170594088 T C unknown 75.60 80 32.37 2.29 +chr6 170626652 170626652 G T het 58.96 232 37.30 0.32 +chr6 170865979 170865979 T G unknown 32.29 49 27.38 1.01 +chr7 139663 139663 C G unknown 53.01 2 42.57 26.50 +chr7 302742 302742 C T unknown 40.26 5 28.33 20.13 +chr7 397548 397548 T G unknown 75.25 6 23.79 12.54 +chr7 624198 624198 G A het 73.68 43 27.69 1.71 +chr7 808756 808756 C T het 84.89 43 25.52 2.74 +chr7 808810 808810 C G het 357.58 45 29.51 7.95 +chr7 813650 813650 G A het 1791.58 130 34.20 13.78 +chr7 822453 822453 C G het 59.62 234 17.21 0.25 +chr7 905739 905739 T G het 416.10 95 32.77 4.38 +chr7 943871 943871 C T het 95.50 67 31.38 1.43 +chr7 944773 944773 T G unknown 110.99 100 35.14 3.96 +chr7 1037381 1037381 G A het 106.65 54 28.51 1.98 +chr7 1131411 1131411 C T het 216.99 86 29.49 9.43 +chr7 1478495 1478495 A G unknown 634.79 139 30.48 6.10 +chr7 1536885 1536885 G C het 76.92 43 29.76 2.56 +chr7 1538614 1538614 G A unknown 51.53 10 31.69 8.59 +chr7 2020045 2020045 G A het 32.17 45 17.02 0.87 +chr7 2565826 2565826 C T het 81.17 51 26.08 2.19 +chr7 2566781 2566781 T C het 47 41 30.83 1.15 +chr7 2617924 2617924 C G het 194.58 127 29.14 1.53 +chr7 2636522 2636522 T G het 53 45 34.09 5.30 +chr7 2636689 2636689 C T het 184.52 22 32.36 10.25 +chr7 2649638 2649638 C A het 53.87 52 22.23 1.04 +chr7 2649782 2649782 A T unknown 43.75 106 34.10 1.62 +chr7 2771253 2771253 C A het 163.40 178 32.92 1.25 +chr7 2983853 2983853 T C het 169.93 116 35.16 1.89 +chr7 3186792 3186792 T G unknown 52.12 59 40.51 3.26 +chr7 4015426 4015426 T C hom 159.35 11 25.95 17.71 +chr7 4017057 4017057 A G het 327.98 56 17.95 5.86 +chr7 4825885 4825885 A G het 60.55 85 29.44 0.93 +chr7 4828489 4828489 G A hom 54.37 18 21.51 3.02 +chr7 5002252 5002252 C T unknown 38.26 5 25.55 12.75 +chr7 5036720 5036720 C T unknown 44.34 33 24.29 4.93 +chr7 5254061 5254061 G A unknown 397.79 113 29.33 4.91 +chr7 5346974 5346974 C A unknown 110.48 42 9.66 5.02 +chr7 5398950 5398950 A G het 493.58 203 28.34 2.43 +chr7 5521477 5521477 G T het 177.55 149 30.46 2.57 +chr7 5567878 5567878 T G het 264.60 180 27.72 1.47 +chr7 5965435 5965435 T C hom 177.89 44 17.21 4.68 +chr7 6182684 6182684 T A het 216.67 106 27.83 2.04 +chr7 6193658 6193658 A G unknown 60.35 61 28.99 1.63 +chr7 6561639 6561639 T C het 41.93 55 32.74 1.05 +chr7 6754356 6754356 A G het 367.58 201 20.03 1.83 +chr7 6756895 6756895 T A het 795.58 238 15.76 3.34 +chr7 6756896 6756896 G C het 148.76 239 15.48 0.62 +chr7 6756920 6756920 G T unknown 37.24 144 11.21 0.47 +chr7 6761742 6761742 G C hom 41.34 47 14.02 2.07 +chr7 6966577 6966577 T G hom 51.35 52 11.60 0.99 +chr7 7415129 7415129 C T unknown 69.79 129 24.61 0.89 +chr7 7645806 7645806 A G het 2198.57 123 35.23 17.87 +chr7 8183347 8183347 C T hom 164.37 8 30.11 20.55 +chr7 8196897 8196897 C T unknown 33.99 153 32.83 2.83 +chr7 8791385 8791385 T C unknown 126.76 163 33.26 1.76 +chr7 9766618 9766618 G T het 65.83 182 14.32 0.36 +chr7 9767845 9767845 G T het 65.02 60 17.82 2.03 +chr7 11509561 11509561 G C het 594.99 265 40.01 9.02 +chr7 11581121 11581121 T C hom 3219.64 223 34.65 14.44 +chr7 11676011 11676011 A T het 59.74 83 23.36 0.95 +chr7 12271452 12271452 A G het 979.72 103 35.94 9.51 +chr7 12620624 12620624 G C het 360.59 67 28.19 5.38 +chr7 12620940 12620940 C G het 135.12 23 21.07 7.11 +chr7 14025640 14025640 G A het 365.77 30 34.76 13.06 +chr7 14027679 14027679 A C het 138.58 148 31.64 1.43 +chr7 14027867 14027867 - CA hom 178.62 84 15.50 2.59 +chr7 15458308 15458308 T A het 206.58 99 27.80 2.37 +chr7 15599828 15599828 T G unknown 163.55 182 33.24 2.02 +chr7 16598655 16598655 G A het 296.95 67 24.82 4.79 +chr7 16605818 16605818 G A het 37.07 15 36.49 9.27 +chr7 16889960 16889960 G A hom 267.32 17 22.50 15.72 +chr7 18688076 18688076 T - unknown 110.37 78 19.54 1.87 +chr7 18993870 18993870 C T hom 2712.54 115 31.71 23.59 +chr7 19156582 19156582 G C hom 120.68 50 25.25 2.41 +chr7 19748280 19748280 G A het 829.58 74 27.89 11.21 +chr7 20199377 20199377 C G het 177.83 142 36.06 1.55 +chr7 20621856 20621856 T G het 335.58 143 30.62 2.35 +chr7 20721148 20721148 A C het 94.02 119 37.87 0.79 +chr7 20826452 20826452 T G hom 3740.01 191 35.25 19.58 +chr7 21611399 21611399 G C het 921.34 105 25.89 8.77 +chr7 21628685 21628685 C G hom 92.67 8 20.41 13.24 +chr7 21631165 21631165 A G unknown 79.99 285 37.33 1.74 +chr7 21657130 21657130 C G hom 1189.71 76 33.11 15.65 +chr7 21778580 21778580 - G het 251.36 39 19.46 6.45 +chr7 21892122 21892122 A G het 134.55 190 30.77 1.56 +chr7 21951105 21951105 T G unknown 145.11 44 35.94 5.58 +chr7 22197361 22197361 G A het 34.90 35 27.14 1.40 +chr7 22347861 22347861 G A het 346.99 108 36.66 10.51 +chr7 23207542 23207542 G T het 105.80 200 33.97 0.78 +chr7 23293746 23293746 A G unknown 498.99 226 36.13 10.62 +chr7 23749867 23749867 C T het 103.60 85 24.82 1.22 +chr7 23775252 23775252 G A het 470.81 191 39.36 2.87 +chr7 23776500 23776500 A C het 229.73 84 31.80 2.73 +chr7 23810845 23810845 G A hom 1768.13 59 28.41 29.97 +chr7 23823172 23823172 C T het 47.33 83 22.01 0.64 +chr7 23917480 23917480 G A hom 151.11 9 25.36 18.89 +chr7 24689469 24689469 C G het 119.21 87 29.61 1.37 +chr7 24703208 24703208 G C unknown 44.14 67 30.94 2.32 +chr7 24784403 24784403 C T unknown 186.99 78 42.63 7.79 +chr7 24882068 24882068 A G het 247.84 111 24.50 2.45 +chr7 25729528 25729528 C G unknown 293.79 231 14.69 1.75 +chr7 26724279 26724279 T G het 212.30 11 35.79 19.30 +chr7 27566053 27566053 G C hom 1585.03 60 31.13 26.42 +chr7 27835722 27835722 T G het 84.21 125 30.65 0.89 +chr7 28111396 28111396 C G het 96.70 62 27.56 1.56 +chr7 28758375 28758375 T G het 73.56 174 31.29 0.60 +chr7 29252724 29252724 A T unknown 46.45 186 11.07 0.57 +chr7 29252850 29252850 T A het 193.41 91 13.94 2.13 +chr7 29519671 29519671 C T unknown 152.56 81 30.17 4.01 +chr7 29591676 29591676 A G unknown 122.36 14 19.79 8.74 +chr7 30087381 30087381 A G unknown 251.80 40 35.65 9.33 +chr7 30174875 30174875 C G het 119.60 52 28.65 2.30 +chr7 30485924 30485924 T A het 42.79 52 30.54 1.04 +chr7 30614508 30614508 A G hom 1319.55 55 30.43 23.99 +chr7 30695289 30695289 G A het 87.11 164 18.01 0.70 +chr7 30951586 30951586 C A unknown 103.13 89 28.84 1.56 +chr7 31139776 31139776 G T unknown 45.06 93 31.04 1.07 +chr7 31862745 31862745 A T het 41.99 167 31.18 0.51 +chr7 31918879 31918879 C T hom 628.36 24 29.29 26.18 +chr7 32109993 32109993 T C het 83.57 191 32.57 0.58 +chr7 32609565 32609565 A G het 546.46 35 27.50 15.61 +chr7 32801155 32801155 C T unknown 32.31 95 17.89 1.08 +chr7 33303940 33303940 G C het 444.58 268 34.38 1.66 +chr7 34118751 34118751 T G unknown 75.55 153 31.33 1.05 +chr7 34867256 34867256 G A het 121.01 56 18.51 2.57 +chr7 34979905 34979905 C A het 233.52 60 15.83 5.99 +chr7 34995075 34995075 A G hom 189.70 17 19.53 11.16 +chr7 36124040 36124040 G A unknown 103.50 49 24.93 2.35 +chr7 36338589 36338589 C T het 420.55 155 28.21 6.78 +chr7 36438916 36438916 T C het 192.81 120 37.72 2.38 +chr7 36763560 36763560 C T hom 1096.56 73 33.36 18.59 +chr7 37264565 37264565 G C unknown 33.21 158 31.19 0.29 +chr7 37989775 37989775 T C het 470.73 56 32.25 14.71 +chr7 38284854 38284854 C T hom 32.04 124 11.10 0.92 +chr7 38433791 38433791 A G het 677.58 106 28.06 6.39 +chr7 38530568 38530568 G T het 459.99 150 42.46 10.22 +chr7 38766508 38766508 C A het 604.58 114 36.87 5.30 +chr7 40234766 40234766 C T het 679.58 200 26.40 3.40 +chr7 42064799 42064799 G T unknown 614.79 78 29.41 9.76 +chr7 43916491 43916491 G A hom 37.56 22 23.94 3.76 +chr7 44098865 44098865 C T het 107.17 27 32.56 11.91 +chr7 44099080 44099080 G T het 100.15 59 24.19 2.38 +chr7 44112862 44112862 T G het 242.55 124 32.12 4.49 +chr7 44186170 44186170 A T het 129.89 117 37.36 1.48 +chr7 44187444 44187444 G T het 59.90 69 25.08 0.87 +chr7 44189692 44189692 C G het 180 55 37.33 13.85 +chr7 44574336 44574336 C T het 50.11 9 25.15 7.16 +chr7 44620836 44620836 C A unknown 449.99 210 39.37 10.23 +chr7 44746755 44746755 C A het 38.48 46 17.80 1.28 +chr7 44797105 44797105 C A het 114.35 43 16.45 3.18 +chr7 44804152 44804152 C T het 85.19 67 25.87 1.81 +chr7 44948186 44948186 A T het 47.32 40 31.68 1.43 +chr7 45141137 45141137 T G het 190.60 43 23.11 4.43 +chr7 45148800 45148800 G T het 132.42 130 30.91 1.02 +chr7 47436558 47436558 A C hom 1849.71 70 34.07 26.42 +chr7 47546375 47546375 C T unknown 80.50 17 30.69 26.83 +chr7 47805890 47805890 T A unknown 66.22 64 33.90 1.41 +chr7 47869074 47869074 G A het 1017.58 289 34.05 3.52 +chr7 47983013 47983013 G A het 319.84 256 35.59 1.78 +chr7 47988034 47988034 C T unknown 50.99 123 34.18 2.55 +chr7 48016305 48016305 C T het 61.82 271 33.35 0.23 +chr7 48028512 48028512 G C het 830.79 125 38.28 9.03 +chr7 48081095 48081095 G T het 3120.57 196 35.98 15.92 +chr7 48141482 48141482 A T unknown 40.05 157 31.38 1.25 +chr7 48311322 48311322 A T hom 65.67 20 19.85 4.38 +chr7 48407217 48407217 T C unknown 36.76 21 41.32 5.25 +chr7 48443506 48443506 T G het 45.49 74 28.65 0.76 +chr7 48467224 48467224 A C het 245.01 50 34.98 16.33 +chr7 48545976 48545976 A G hom 4339.01 140 33.74 30.99 +chr7 50468234 50468234 T G het 767.58 126 30.54 6.09 +chr7 50514736 50514736 C A unknown 44.80 146 32.05 0.73 +chr7 50660731 50660731 A G het 238.60 188 33.90 1.27 +chr7 51097322 51097322 T G het 136.59 90 25.30 1.52 +chr7 51145202 51145202 G T unknown 39.01 6 21.37 9.75 +chr7 54487880 54487880 A T unknown 251.13 76 17.02 4.65 +chr7 54617893 54617893 T G het 367.04 235 38.44 2.22 +chr7 55210961 55210961 A C het 33.84 63 26.18 1.17 +chr7 55221735 55221735 G T het 142.82 207 38.89 1.40 +chr7 55238821 55238821 A T het 50.54 69 19.03 1.10 +chr7 55328024 55328026 CCG - unknown 315.90 19 25.45 24.30 +chr7 55410986 55410986 A G hom 47.03 6 19.05 11.76 +chr7 55629723 55629723 A G het 178.55 162 38.66 2.45 +chr7 56243420 56243420 T C unknown 79 74 29.49 4.94 +chr7 57689929 57689929 G C unknown 86.51 7 22.52 17.30 +chr7 57882753 57882753 T G het 84.71 93 15.15 0.91 +chr7 62609177 62609177 C A unknown 86.28 69 19.41 1.66 +chr7 63224612 63224612 C G hom 162.17 31 15.31 5.23 +chr7 63226129 63226129 G T unknown 342.89 53 22.08 8.36 +chr7 63538393 63538393 G A het 160.84 147 15.88 1.18 +chr7 63563237 63563237 C G unknown 35.24 75 14.55 0.90 +chr7 63575006 63575006 A G unknown 158.90 40 21.37 4.82 +chr7 63602429 63602429 G A unknown 60.74 95 11.49 0.91 +chr7 64324625 64324625 G T het 232.69 39 25.67 5.97 +chr7 64466831 64466831 G C unknown 64.16 122 17.23 0.70 +chr7 66413608 66413608 G A unknown 82.25 79 31.04 1.33 +chr7 66751272 66751272 T C unknown 67.89 296 9.94 0.45 +chr7 70250516 70250516 T A unknown 43.99 199 38.73 1.00 +chr7 70254801 70254801 G C het 77.66 131 34.39 0.59 +chr7 72420444 72420444 C T het 54.38 164 19.07 0.65 +chr7 72483668 72483668 A G hom 3358.01 278 16.93 12.08 +chr7 72856962 72856962 A G unknown 110.55 138 32.84 1.63 +chr7 73008676 73008676 T G het 673.58 111 26.77 6.07 +chr7 73151344 73151344 C G het 116.55 222 31.38 1.12 +chr7 73449846 73449846 G A het 590.25 60 31.46 9.84 +chr7 73520232 73520232 T A het 362.58 102 34.03 3.55 +chr7 73530159 73530159 G T het 138.87 92 33.55 1.51 +chr7 73801043 73801043 C T hom 59.60 24 28.73 4.97 +chr7 73927358 73927358 C T het 33.32 43 21.83 0.93 +chr7 73950568 73950568 T C het 72.81 79 25.29 0.92 +chr7 73972024 73972024 G A het 84.20 111 27.11 1.48 +chr7 74016622 74016622 G A unknown 142.40 101 32.76 1.85 +chr7 74482567 74482567 A G het 97.10 113 27.74 1.83 +chr7 74615810 74615810 A T hom 138.48 26 22.04 6.92 +chr7 75051809 75051809 T G hom 63.30 13 19.56 5.75 +chr7 75066911 75066911 T G unknown 32.27 117 16.71 1.24 +chr7 75174299 75174299 - T unknown 235.76 117 29.82 2.77 +chr7 75583332 75583332 C A unknown 37.08 162 32.57 0.44 +chr7 75634687 75634687 G A unknown 347.79 160 35.92 3.13 +chr7 76023131 76023131 - G hom 468.58 19 26.57 24.66 +chr7 76943577 76943577 T G het 370.09 51 27.31 7.26 +chr7 77423574 77423574 G A het 1038.58 104 36.46 9.99 +chr7 77649093 77649093 A C unknown 64.56 105 38.12 1.29 +chr7 77754957 77754957 C T hom 772.26 62 31.16 12.46 +chr7 81372401 81372401 C A het 86.82 66 27.43 2.02 +chr7 81588636 81588636 G A unknown 1824.57 108 41.19 23.39 +chr7 81601231 81601231 C G unknown 417.67 56 23.54 10.71 +chr7 82450364 82450364 A G het 202.99 151 33.39 6.15 +chr7 82583609 82583609 A C het 773.99 277 36.36 10.18 +chr7 83029438 83029438 C T hom 3233.06 220 31.82 14.70 +chr7 84594517 84594517 A G het 35.24 56 26.05 0.70 +chr7 84610800 84610800 A G hom 63.22 8 17.67 10.54 +chr7 84751198 84751198 T A het 120.21 79 26.64 1.52 +chr7 85148105 85148105 A G hom 99.67 4 30.05 24.92 +chr7 86468154 86468154 G T het 46.72 40 33.13 2.03 +chr7 86822992 86822992 T A het 417.87 70 35.28 6.74 +chr7 87082292 87082292 G A unknown 1039.79 149 38.85 9.63 +chr7 87151570 87151570 C T het 81.83 142 15.28 0.58 +chr7 87179443 87179443 G A het 999.79 134 37.06 10.64 +chr7 87536515 87536515 T C het 116.99 106 23.28 1.70 +chr7 87795282 87795282 C G het 358.99 245 37.37 5.61 +chr7 87816096 87816096 C A unknown 30.10 56 36.65 6.02 +chr7 87840189 87840189 A T het 126.94 90 29.81 1.61 +chr7 88965609 88965609 A G het 258.99 138 39.45 7.19 +chr7 89976123 89976123 C A het 88.38 103 27.68 0.86 +chr7 90233618 90233618 G A het 327.91 56 30.96 10.93 +chr7 91734965 91734965 G T het 150.12 84 32.39 1.79 +chr7 91864193 91864193 T C het 55.68 225 27.59 0.33 +chr7 91864204 91864204 G A het 145.59 185 24.50 0.79 +chr7 92071513 92071513 T A het 107.73 60 22.08 1.80 +chr7 92119284 92119284 C G hom 1245.02 54 26.96 23.06 +chr7 92732594 92732594 T G unknown 31.76 118 35.60 0.42 +chr7 93055840 93055840 C A unknown 43.20 72 20.59 1.17 +chr7 93074519 93074519 G C unknown 36.26 6 22.04 7.25 +chr7 93091488 93091488 C T het 723.58 62 30.87 11.67 +chr7 93551428 93551428 C T het 226.59 45 36.33 5.04 +chr7 93555350 93555350 C T het 224.73 99 33.77 2.27 +chr7 94024324 94024324 T A het 55.46 63 29.75 1.01 +chr7 94038934 94038934 C T hom 4748.01 164 37.04 28.95 +chr7 94049648 94049648 G C het 84.88 107 34.06 1.09 +chr7 94049773 94049773 G A unknown 44 118 36.01 1.57 +chr7 94056316 94056316 A G het 138.23 43 24.96 4.61 +chr7 94294085 94294085 C G het 46.92 157 34.87 0.39 +chr7 94991620 94991620 A C het 55.16 64 31.79 0.86 +chr7 95214887 95214887 A C het 240.59 97 26.88 2.48 +chr7 95214911 95214911 T C het 598.79 80 30.09 10.51 +chr7 98591501 98591501 A T unknown 75.51 10 16.01 12.59 +chr7 98654974 98654974 A T het 319.58 145 34.91 2.20 +chr7 98771462 98771462 A G het 661.79 123 36.36 7.70 +chr7 98800950 98800950 T G hom 32 26 19.45 4.57 +chr7 98848752 98848752 T C hom 416.65 29 20.91 14.37 +chr7 99022452 99022452 G T het 96.57 77 30.53 2.36 +chr7 99032769 99032769 C A het 72.41 41 22.89 2.68 +chr7 99042497 99042497 A G unknown 57.32 78 21.25 1.69 +chr7 99110117 99110117 A T unknown 41.44 117 23.94 0.78 +chr7 99489868 99489868 G C unknown 420.99 215 31.72 8.96 +chr7 99690665 99690665 A T het 202.06 109 34.29 2.49 +chr7 99764614 99764614 C T het 55.45 30 23.63 2.13 +chr7 99786122 99786122 C G het 291.12 258 13.84 1.13 +chr7 99955976 99955976 A G het 78.98 81 24.39 0.98 +chr7 100175887 100175887 G C het 39.92 61 21.92 1.17 +chr7 100205035 100205035 A T het 322.58 120 30.44 2.69 +chr7 100239207 100239207 A G unknown 45.97 42 27.11 2.00 +chr7 100244815 100244815 C G het 220.59 119 29.40 1.85 +chr7 100283177 100283177 G A hom 36.90 22 20.72 3.08 +chr7 100304816 100304816 G A het 56.89 115 34.69 0.66 +chr7 100371384 100371384 T A het 181.66 85 34.36 2.14 +chr7 100373271 100373271 G T het 1933.58 196 34.14 9.87 +chr7 100385739 100385739 A T het 30.67 159 36.86 0.44 +chr7 100417816 100417816 C T het 127.01 162 31.15 1.08 +chr7 100463495 100463495 T C het 39.60 70 24.41 0.79 +chr7 100466160 100466160 T G unknown 160.36 160 36.14 2.23 +chr7 100470281 100470281 C A het 128.60 139 32.30 1.86 +chr7 100484917 100484917 C T het 1128.58 185 31.97 6.10 +chr7 100486611 100486611 G C het 268.01 153 29.45 1.75 +chr7 100491191 100491191 G A het 38.15 137 33.25 0.38 +chr7 100550799 100550799 G T het 470.63 817 10.15 0.58 +chr7 100550952 100550952 C T het 46.83 457 15.23 0.21 +chr7 100615378 100615378 C - het 350.56 79 30.89 4.44 +chr7 100637887 100637887 A G unknown 49.53 107 8.64 1.13 +chr7 100652314 100652314 G C unknown 173.70 117 29.78 1.87 +chr7 100663397 100663397 G C unknown 36.62 62 29.99 0.75 +chr7 100675555 100675555 G C het 784.58 338 24.76 2.32 +chr7 100780579 100780579 A T het 214.59 49 27.71 4.38 +chr7 100839570 100839570 T A het 106.84 39 31.63 3.24 +chr7 100933040 100933040 T A het 91.72 107 10.02 0.86 +chr7 101747575 101747575 A G het 3566.01 152 34.50 23.46 +chr7 101844899 101844899 T A het 80.56 143 30.25 1.18 +chr7 101847720 101847720 A T het 56.84 105 25.40 0.54 +chr7 101977827 101977827 G T hom 61.35 171 4.53 0.44 +chr7 102574618 102574618 G A unknown 148.83 92 37.34 2.13 +chr7 102727009 102727009 A T het 313.79 231 25.84 1.99 +chr7 102978259 102978259 C T het 125.60 156 27.60 2.09 +chr7 103180913 103180913 T C het 830.58 209 33.56 3.97 +chr7 103183272 103183272 T C het 36.01 192 36.24 0.73 +chr7 104782359 104782359 G T unknown 48.99 140 35.25 1.96 +chr7 105148460 105148460 G T het 142.30 20 35.49 11.86 +chr7 105649728 105649728 G T het 290.58 65 28.27 4.47 +chr7 105904094 105904094 T G het 398.62 112 32.72 3.56 +chr7 106508644 106508644 A C het 117.14 156 33.25 3.00 +chr7 106768839 106768839 - AC het 270.47 24 27.69 12.29 +chr7 107577456 107577456 T C unknown 571.79 71 25.92 10.59 +chr7 107643360 107643360 C G het 84.22 95 26.37 0.89 +chr7 107671458 107671458 C T het 74.22 45 25.03 2.25 +chr7 107677851 107677851 A G unknown 134.80 100 24.50 2.41 +chr7 107718754 107718754 G - unknown 454.80 155 27.09 3.89 +chr7 107720162 107720162 C A het 313.99 155 35.44 9.24 +chr7 107824889 107824889 C G het 1883.63 105 38.63 17.94 +chr7 107834572 107834572 T G het 229.60 145 34.98 1.58 +chr7 107849908 107849908 G A hom 3433.01 143 36.91 24.01 +chr7 111480798 111480798 G A unknown 31.15 85 30.41 0.53 +chr7 114175551 114175551 T A unknown 49.79 117 35.42 0.83 +chr7 115897242 115897242 T G unknown 570 66 34.87 15.83 +chr7 116862260 116862260 G A unknown 40.28 23 26.07 4.48 +chr7 118591074 118591074 A G het 642.23 39 23.79 16.47 +chr7 119914751 119914751 T C unknown 32.02 157 28.46 0.87 +chr7 120979415 120979415 T G het 449.58 84 35.73 5.35 +chr7 122000867 122000867 G A het 142.93 67 25.16 2.27 +chr7 122054228 122054228 T A het 110.18 216 35.38 1.72 +chr7 122774671 122774671 T G unknown 42.62 83 28.91 2.13 +chr7 123508466 123508466 C A unknown 79.66 227 32.85 0.63 +chr7 123516943 123516943 G A unknown 2136.79 181 33.95 16.44 +chr7 124116738 124116738 T G het 532.58 150 21.96 3.55 +chr7 126882703 126882703 T C unknown 43.97 62 27.51 2.31 +chr7 127292477 127292477 C G unknown 37.01 14 19.30 5.29 +chr7 127714679 127714679 A G het 50.48 61 31.57 1.10 +chr7 127977304 127977304 C T het 383.99 129 35.45 9.37 +chr7 128049587 128049587 C A het 398.61 121 27.79 3.29 +chr7 128096678 128096678 T C het 1738.71 102 36.31 17.05 +chr7 128117125 128117125 G T unknown 56.93 66 12.91 3.56 +chr7 128371206 128371206 G A unknown 438.99 156 38.73 10.45 +chr7 128407645 128407645 C T het 638.58 174 30.93 3.67 +chr7 128446826 128446826 C T het 163.58 78 26.52 2.10 +chr7 128475520 128475520 C G unknown 94.53 103 23.40 1.17 +chr7 128478844 128478844 C G het 60.24 72 21.55 1.14 +chr7 128481141 128481141 C T het 88.74 47 23.05 1.89 +chr7 128484048 128484048 C A het 79.92 74 31.50 1.57 +chr7 128484668 128484668 A G het 30.28 68 30.61 0.61 +chr7 128495187 128495187 G C het 55.62 66 25.94 1.92 +chr7 128497252 128497252 G A unknown 59.20 185 17.44 1.32 +chr7 128785008 128785008 C T unknown 40.01 6 22.58 13.34 +chr7 128806551 128806551 G T het 121.57 105 35.80 2.43 +chr7 129348769 129348769 A T het 57.95 88 18.25 0.91 +chr7 129519365 129519365 G A het 30.50 121 29.79 0.28 +chr7 129588837 129588837 C G het 230.84 160 35.61 1.85 +chr7 129929585 129929585 T A het 621.58 166 38.27 3.74 +chr7 129950710 129950710 G C unknown 57.42 187 30.17 0.64 +chr7 130039895 130039895 G A unknown 43.13 124 30.94 2.40 +chr7 130148507 130148507 G A het 1322.58 154 35.29 8.59 +chr7 130151248 130151248 G C het 79.55 105 33.98 1.59 +chr7 130151271 130151271 A C het 131.25 126 37.39 1.38 +chr7 130295700 130295700 G A het 35.30 37 32.03 3.53 +chr7 130528404 130528404 C G het 206.44 27 27.12 7.65 +chr7 130927510 130927510 A G hom 139.11 66 12.27 4.09 +chr7 131191560 131191560 C G unknown 61.23 62 31.16 1.91 +chr7 131195712 131195712 G A het 2246.78 196 36.01 11.46 +chr7 131555535 131555535 C T unknown 102.76 5 27.33 25.69 +chr7 131853036 131853036 G T het 142.65 42 27.61 3.40 +chr7 132854888 132854888 T G unknown 32.03 92 13.98 0.78 +chr7 133979775 133979775 A T het 170.55 334 32.96 1.19 +chr7 134613549 134613549 G A unknown 64.57 57 25.39 2.31 +chr7 134618710 134618710 A G het 516.55 157 35.04 6.80 +chr7 134877935 134877935 A G het 694.58 97 30.43 7.16 +chr7 135048497 135048497 C T hom 761.35 26 34.95 29.28 +chr7 135099048 135099048 A G het 35.62 98 21.83 0.40 +chr7 135406090 135406090 T C het 131.80 37 21.67 3.56 +chr7 135482664 135482664 G T het 120.88 66 27.18 2.57 +chr7 135929205 135929205 G A hom 64.05 24 15.62 2.67 +chr7 136588109 136588109 G A het 758.79 98 32.36 11.33 +chr7 136939680 136939680 G A unknown 91.26 178 31.43 1.83 +chr7 137647262 137647262 T C unknown 130.64 15 32.29 13.06 +chr7 138126727 138126727 A T het 136.10 106 25.10 1.28 +chr7 138143628 138143628 T C hom 73.98 8 21.62 24.66 +chr7 138312973 138312973 G C het 160.47 203 35.06 1.03 +chr7 138597036 138597036 A G het 277.99 108 29.09 11.12 +chr7 138603551 138603551 G T het 442.58 161 32.35 2.75 +chr7 138719320 138719320 A C het 173.67 174 33.49 1.91 +chr7 139416939 139416939 C G het 117.99 81 37.22 6.21 +chr7 139612903 139612903 T A het 85.22 151 33.75 0.86 +chr7 139801777 139801777 T G het 2577.58 203 38.80 12.70 +chr7 140389364 140389364 C G unknown 40.91 71 37.07 1.17 +chr7 140706375 140706375 A G het 123.55 97 31.81 3.17 +chr7 140774467 140774467 C G unknown 31.23 11 21.73 10.41 +chr7 141311021 141311021 A C het 224.59 62 24.34 3.62 +chr7 141439003 141439003 C T unknown 611.79 129 32.27 7.03 +chr7 141563425 141563425 T A het 30.24 49 16.81 1.04 +chr7 141619210 141619210 T G het 107.43 250 24.92 0.48 +chr7 141635538 141635538 - A hom 3135.24 94 31.53 33.35 +chr7 141721647 141721647 A G het 30.87 102 32.71 0.45 +chr7 141738308 141738308 T C unknown 681.79 87 33.70 10.49 +chr7 141740409 141740409 A G hom 3683.01 96 39.07 38.36 +chr7 141750316 141750316 C T hom 537.58 50 26.96 10.75 +chr7 141781976 141781976 C A hom 30.36 120 11.17 0.32 +chr7 141831683 141831683 A G unknown 42.01 116 35.15 1.20 +chr7 141872892 141872892 G A hom 851.29 38 34.60 23.65 +chr7 141955250 141955250 C T het 637.99 158 37.06 13.87 +chr7 142001030 142001030 A G hom 1145.06 50 32.88 22.90 +chr7 142013410 142013410 A G het 86.26 286 20.44 0.30 +chr7 142013470 142013470 C A unknown 36 284 15.94 0.57 +chr7 142111404 142111404 G A unknown 54.42 122 9.50 0.69 +chr7 142148924 142148924 T C hom 204.50 139 12.14 1.47 +chr7 142162424 142162424 A T het 58.99 111 11.81 0.53 +chr7 142162463 142162463 C T hom 101.51 53 10.76 3.76 +chr7 142168839 142168839 G T hom 145.73 33 12.49 4.42 +chr7 142223893 142223893 C G het 85.92 121 13.93 0.95 +chr7 142247567 142247567 A G het 114.63 152 17.38 0.75 +chr7 142344750 142344750 T C hom 166.13 58 14.46 3.53 +chr7 142423759 142423759 C T het 33.03 77 24.45 0.60 +chr7 142458511 142458511 G T het 266.02 304 12.10 0.88 +chr7 142467449 142467449 C A het 769.65 73 22.50 10.54 +chr7 142468189 142468189 C G het 95.99 198 18.73 2.53 +chr7 142471085 142471085 G T unknown 74.32 53 22.89 2.32 +chr7 142495274 142495274 G C het 47.39 54 28.51 1.16 +chr7 142566163 142566163 C G hom 1001.03 51 25.29 19.63 +chr7 142574244 142574244 C A het 46.74 101 16.62 0.46 +chr7 143029371 143029371 G T unknown 181.89 10 26.98 20.21 +chr7 143029797 143029797 T C unknown 265.77 279 31.72 1.69 +chr7 143039620 143039620 G A het 818.79 113 31.84 9.99 +chr7 143088794 143088794 G C het 183.10 84 36.07 2.18 +chr7 143134791 143134791 A T het 123.55 90 27.22 2.21 +chr7 143339645 143339645 C T het 208.80 17 22.33 12.28 +chr7 143792217 143792217 C T het 79.76 138 37.30 0.74 +chr7 143870760 143870760 A G unknown 30.27 12 23.40 5.05 +chr7 144015658 144015658 C T het 59.78 48 21.22 1.53 +chr7 144096805 144096805 C T unknown 407.99 275 37.58 7.56 +chr7 144107345 144107345 C A unknown 42.83 53 26.89 1.53 +chr7 144150728 144150728 C A het 919.58 209 30.24 4.40 +chr7 146536917 146536917 A C het 274.76 168 33.23 1.64 +chr7 148457458 148457458 C T unknown 45.43 239 25.48 0.30 +chr7 148463860 148463860 T C hom 947.29 36 29.00 27.07 +chr7 148494858 148494858 A C het 48.99 44 19.85 1.22 +chr7 148851472 148851472 A C het 36.92 62 25.92 1.42 +chr7 149152381 149152381 G A unknown 47.08 132 16.64 1.18 +chr7 149291073 149291073 T C het 312.71 68 26.55 4.60 +chr7 149317062 149317062 C T hom 193.78 111 10.64 1.75 +chr7 149426305 149426305 - C hom 388.70 33 20.92 11.78 +chr7 149427680 149427680 G C hom 71.39 13 17.62 7.14 +chr7 149492031 149492031 C G het 50.71 81 26.42 0.63 +chr7 149493136 149493136 A C het 45.72 23 31.53 1.99 +chr7 149521183 149521183 G A het 1295.49 71 35.48 18.25 +chr7 150389746 150389746 G T unknown 65.70 91 29.91 1.40 +chr7 150500356 150500356 T C het 38.25 4 42.22 12.75 +chr7 150771094 150771094 - T het 361.55 62 24.81 5.83 +chr7 150791036 150791036 A G hom 47.01 26 11.34 3.36 +chr7 150813828 150813828 G C het 42.61 99 22.73 1.01 +chr7 151064872 151064872 A G unknown 826.79 183 36.41 6.78 +chr7 151074015 151074015 G C hom 93.39 19 23.41 13.34 +chr7 151093193 151093193 T G het 148.71 69 34.28 4.37 +chr7 151135453 151135453 C A het 50.39 29 19.06 2.19 +chr7 151265931 151265931 G C het 88.73 106 33.95 1.41 +chr7 151644297 151644297 C T unknown 46.77 10 16.46 15.59 +chr7 151684407 151684407 C G unknown 32.61 115 32.55 0.62 +chr7 151846060 151846060 C A het 35.87 106 31.50 0.60 +chr7 151884404 151884404 C A unknown 77.99 159 31.98 3.55 +chr7 151896457 151896457 A G het 235.72 140 34.45 2.65 +chr7 152000756 152000756 C T het 53.01 49 10.00 1.71 +chr7 152142887 152142887 T A unknown 45.29 97 12.57 0.61 +chr7 152306544 152306544 G A hom 789.06 30 27.79 26.30 +chr7 152517296 152517296 G C het 33.12 120 18.00 0.56 +chr7 154373158 154373158 A C hom 83.22 8 22.20 11.89 +chr7 154585861 154585861 G C het 38.12 85 33.48 2.38 +chr7 154598639 154598639 G A unknown 1225.79 104 34.69 14.95 +chr7 154759567 154759567 C A het 657.58 136 35.79 4.84 +chr7 155149977 155149977 C T hom 48.01 4 26.82 12.00 +chr7 155538252 155538252 C A unknown 48.82 75 30.17 1.08 +chr7 155559204 155559204 G C hom 37 40 23.68 1.85 +chr7 156468588 156468588 A T het 174.63 119 32.04 1.47 +chr7 156469133 156469133 C G het 982.60 111 27.91 8.85 +chr7 157016105 157016105 C A het 331.64 63 27.63 5.26 +chr7 157361564 157361564 C T het 364.79 93 34.17 4.93 +chr7 157439476 157439476 A G hom 104.88 21 28.58 5.83 +chr7 157637087 157637087 A G hom 48.01 7 20.69 9.60 +chr7 157874101 157874101 C T unknown 175.99 94 37.51 6.29 +chr7 157926717 157926717 A C unknown 47.99 140 32.73 1.41 +chr7 158476148 158476148 G A hom 3135.98 118 31.52 26.58 +chr7 158512356 158512356 G - hom 1519.96 39 31.03 38.97 +chr8 618721 618721 G A het 63.86 95 28.19 0.87 +chr8 618728 618728 A G hom 458.09 96 27.05 10.41 +chr8 665858 665858 C T het 974.79 185 38.77 7.33 +chr8 1645507 1645507 T G het 182.70 153 30.22 1.60 +chr8 1905132 1905132 G A hom 3653.01 245 37.47 20.07 +chr8 2808811 2808811 G T het 493.25 154 28.20 3.20 +chr8 2823304 2823304 G A het 279.79 182 34.15 2.09 +chr8 3045393 3045393 G T unknown 49.55 117 34.34 1.05 +chr8 3071882 3071882 G A unknown 64.86 15 43.95 10.81 +chr8 3226994 3226994 A G het 634.79 75 34.98 12.45 +chr8 3263528 3263528 G A het 319.79 71 31.25 6.27 +chr8 3623701 3623701 G A unknown 41.01 9 16.49 6.84 +chr8 4851015 4851015 T C unknown 49.77 2 38.00 24.88 +chr8 6605227 6605227 T C het 639.58 97 31.17 6.59 +chr8 6682861 6682861 C T het 159.59 42 27.38 7.25 +chr8 7153398 7153398 T C het 223.95 76 16.65 3.61 +chr8 7155165 7155165 C T unknown 77.84 174 22.69 0.83 +chr8 7157718 7157718 T C unknown 108.83 22 15.55 6.80 +chr8 7191012 7191012 T C hom 616.35 150 12.78 4.11 +chr8 7195973 7195973 T C het 111.52 87 16.97 1.57 +chr8 7199590 7199590 T G het 454.51 124 13.75 3.67 +chr8 7215446 7215446 T C hom 463.41 102 13.76 4.54 +chr8 7218621 7218621 C G hom 359.87 283 14.94 4.67 +chr8 7286413 7286413 T G hom 80.76 11 20.24 13.46 +chr8 7629258 7629258 C T het 88.68 30 18.27 3.17 +chr8 7825280 7825280 A C het 49.74 45 13.96 2.16 +chr8 7877664 7877664 A G het 467.58 163 18.50 2.87 +chr8 8093412 8093412 G T het 60.69 345 15.33 0.33 +chr8 8094699 8094699 G C het 70.62 159 14.24 0.57 +chr8 8747537 8747537 T C het 1868.58 126 36.75 14.83 +chr8 9599082 9599082 G A het 99 44 40.03 7.62 +chr8 9605654 9605654 C A het 69.97 91 25.53 1.04 +chr8 10101914 10101914 G C hom 50.77 4 28.87 25.38 +chr8 10150141 10150141 G C unknown 49.77 4 26.58 16.59 +chr8 10423357 10423357 G C unknown 45.77 5 24.67 15.26 +chr8 10466985 10466985 G T unknown 119.57 58 30.51 3.74 +chr8 10530037 10530037 G A hom 471.80 24 24.42 19.66 +chr8 10623138 10623138 T A unknown 125.99 120 37.92 4.67 +chr8 10755767 10755767 C A het 94.65 52 26.45 1.82 +chr8 10892719 10892719 G T unknown 31.08 87 25.30 1.11 +chr8 11172412 11172412 T A het 155.64 67 26.84 2.32 +chr8 11172427 11172427 A T het 106.75 87 29.82 1.23 +chr8 11189075 11189075 C G het 37.62 293 13.06 0.27 +chr8 11213823 11213823 C G het 31.69 81 31.05 0.39 +chr8 11606577 11606577 A G het 65.86 67 29.18 1.24 +chr8 11683653 11683653 T C hom 2137.80 166 26.96 12.88 +chr8 11777849 11777849 C T unknown 122.27 89 13.11 1.72 +chr8 11832263 11832263 A T unknown 43.26 20 15.09 4.81 +chr8 11986835 11986835 T G het 44.36 92 6.97 1.14 +chr8 11990688 11990688 A G het 205.67 314 10.80 0.66 +chr8 11990710 11990710 G T unknown 106.09 286 10.20 0.83 +chr8 11991120 11991120 T C het 246.67 203 12.50 1.22 +chr8 11994685 11994685 A T het 418.84 166 14.34 3.25 +chr8 12231980 12231980 G T het 67.88 339 14.58 0.25 +chr8 12232466 12232466 A G unknown 64.25 284 15.02 0.31 +chr8 12237393 12237393 G A unknown 150.08 309 17.77 0.97 +chr8 12493831 12493831 C A het 30.14 134 11.04 0.44 +chr8 12948854 12948854 C T unknown 173.71 214 37.57 4.96 +chr8 12957475 12957475 C T het 2824.58 206 41.42 13.71 +chr8 14095250 14095250 A T hom 6203.01 190 30.21 32.65 +chr8 15531295 15531295 C A het 110.58 138 35.14 1.37 +chr8 17055810 17055810 A G het 317.99 183 35.17 6.49 +chr8 17125837 17125837 A T het 98.18 218 16.81 0.45 +chr8 17170740 17170740 C G het 362.79 51 39.67 10.08 +chr8 17206588 17206588 G A het 1462.79 219 39.72 9.56 +chr8 17453874 17453874 A C unknown 47.03 13 19.53 6.72 +chr8 17486063 17486063 G C het 177.83 173 38.27 1.43 +chr8 17486092 17486092 T C het 172.82 141 34.20 1.75 +chr8 17532573 17532573 T C het 65.16 21 32.33 4.34 +chr8 17612456 17612456 C T het 5979.01 213 35.60 28.07 +chr8 17797403 17797403 T G unknown 108.78 55 28.74 2.65 +chr8 17919031 17919031 C T unknown 256.18 61 39.67 7.12 +chr8 17945990 17945990 T G unknown 133.97 89 17.95 1.84 +chr8 18228291 18228291 C A hom 30.02 5 22.41 7.50 +chr8 18240800 18240800 G C unknown 122.32 69 21.70 4.22 +chr8 18432578 18432578 C G hom 811.34 46 27.51 17.64 +chr8 18432924 18432924 C T hom 40.93 10 19.81 13.64 +chr8 18859494 18859494 C G het 31.32 14 27.55 3.48 +chr8 19677184 19677184 A C het 113.24 47 24.86 2.76 +chr8 20004433 20004433 G C het 98.93 82 33.60 1.21 +chr8 20005205 20005205 G T het 266.41 57 29.31 4.67 +chr8 20068619 20068619 A G het 830.58 95 29.09 8.74 +chr8 20069655 20069655 G A het 106.77 65 19.66 1.64 +chr8 20110244 20110244 G T het 35.03 48 33.07 1.52 +chr8 21883120 21883120 C T unknown 158.40 156 31.19 2.44 +chr8 21956369 21956369 A T het 245.63 108 28.13 2.27 +chr8 21957312 21957312 C G het 138.01 108 27.50 1.87 +chr8 21978578 21978578 A G unknown 307.79 98 26.06 3.95 +chr8 21980090 21980090 C A het 112.77 40 29.31 2.82 +chr8 22020066 22020066 T C het 637.58 90 29.57 7.08 +chr8 22056435 22056435 C T unknown 30.77 7 19.92 7.69 +chr8 22211756 22211756 T A het 2001.57 107 35.99 18.71 +chr8 22421355 22421355 A G unknown 154.95 29 30.50 6.74 +chr8 22481660 22481660 T G het 272.87 124 21.97 2.65 +chr8 22887130 22887130 G T unknown 67.85 72 27.96 1.74 +chr8 22969290 22969290 G T unknown 53.42 89 21.14 1.07 +chr8 23114165 23114165 A C unknown 81.28 169 20.62 0.63 +chr8 23118155 23118155 T C hom 2889.57 157 36.09 18.40 +chr8 23626151 23626151 T A het 82.99 172 30.08 2.02 +chr8 24197103 24197103 T A het 243.58 58 31.31 4.20 +chr8 24256564 24256564 G A het 34.21 58 30.51 0.81 +chr8 24324421 24324421 A C het 544.58 185 37.97 2.94 +chr8 24772246 24772246 A G het 136.63 91 34.26 1.50 +chr8 24773106 24773106 T A het 650.58 171 29.45 3.80 +chr8 25126330 25126330 A T het 176.99 50 22.16 3.85 +chr8 25200148 25200148 A G hom 683.50 26 34.04 26.29 +chr8 25216535 25216535 T C het 173.80 200 33.77 1.27 +chr8 25718872 25718872 C G unknown 61.55 88 30.86 1.50 +chr8 26291436 26291436 A G hom 1517.45 61 28.01 24.88 +chr8 26484791 26484791 A T unknown 106.56 119 36.66 1.69 +chr8 27094548 27094548 A G hom 1090.02 33 35.21 33.03 +chr8 27162141 27162141 A C het 44.12 76 30.59 2.21 +chr8 27308849 27308849 A G hom 207.89 10 26.99 20.79 +chr8 27327270 27327270 A T unknown 96.81 95 29.39 1.36 +chr8 27373923 27373923 T C het 2703.58 210 37.47 12.87 +chr8 27472069 27472069 A T het 38.94 80 30.00 0.49 +chr8 27516059 27516059 G C unknown 40 267 30.75 0.66 +chr8 27619882 27619882 G A het 54.90 41 28.91 1.89 +chr8 27927202 27927202 A T unknown 96.99 117 28.33 1.14 +chr8 27995371 27995371 C A het 141.66 86 31.45 1.65 +chr8 28208910 28208910 A C het 103.76 68 26.58 1.53 +chr8 28378369 28378369 T G het 146.41 70 24.21 2.09 +chr8 28575244 28575244 T G unknown 51.58 119 31.44 0.77 +chr8 28707628 28707628 A G unknown 30.87 86 23.94 0.86 +chr8 28906669 28906669 C A het 177.83 106 30.19 1.68 +chr8 28967679 28967679 C T het 98.61 64 26.49 1.90 +chr8 29062208 29062208 A C unknown 53.41 64 27.82 1.09 +chr8 30332236 30332236 G C het 119.41 109 24.89 1.10 +chr8 30703520 30703520 T G unknown 130.14 215 35.27 2.21 +chr8 30889972 30889972 C G het 276.79 134 25.00 2.94 +chr8 30947951 30947951 C T het 99.05 106 30.86 0.93 +chr8 30948496 30948496 T G het 119.62 131 28.94 1.46 +chr8 31001190 31001190 T C het 36.65 95 28.31 1.15 +chr8 31004727 31004727 C G het 34.63 60 28.59 0.62 +chr8 31077434 31077434 T G hom 60.68 79 10.83 1.24 +chr8 33354873 33354873 C - hom 285.63 48 17.28 6.64 +chr8 33356206 33356206 T G het 44.33 33 21.45 1.58 +chr8 33407007 33407007 T A het 385.58 90 26.85 4.28 +chr8 33416189 33416189 G A hom 1359.58 137 35.69 9.92 +chr8 35584021 35584021 G C het 232.79 202 30.91 1.67 +chr8 36767024 36767024 T C unknown 1542.79 321 39.09 7.24 +chr8 37602013 37602013 A G unknown 109.55 325 34.97 0.71 +chr8 37611150 37611150 A G het 125.22 42 35.80 3.30 +chr8 37734993 37734993 T A het 58.88 183 19.18 0.59 +chr8 37793453 37793453 T A het 107.80 110 26.63 1.28 +chr8 38003787 38003787 T C het 1884.57 128 33.27 14.72 +chr8 38173426 38173426 T G het 190.65 134 34.92 1.42 +chr8 38826290 38826290 G A unknown 782.56 73 39.69 17.39 +chr8 38840591 38840591 C T het 107.07 56 29.11 7.14 +chr8 38899396 38899396 G C hom 142.65 35 21.08 4.08 +chr8 39008838 39008838 G A het 70.76 99 26.24 1.22 +chr8 39022475 39022475 A C unknown 35.86 115 28.61 0.50 +chr8 39022884 39022884 T A het 336.22 59 33.39 9.34 +chr8 39251030 39251030 G A unknown 54.67 16 18.60 9.11 +chr8 39606956 39606956 T A het 158.10 161 35.57 0.98 +chr8 39842405 39842405 G C unknown 181.89 44 36.85 5.87 +chr8 41472375 41472375 G A unknown 37.28 7 29.65 9.32 +chr8 41519248 41519248 T C het 909.52 64 25.50 14.21 +chr8 41581912 41581912 G C het 64.25 16 30.05 5.35 +chr8 41790518 41790518 A C het 374.49 263 31.72 2.05 +chr8 41805479 41805479 C A het 88.02 82 34.96 1.42 +chr8 42146209 42146209 C G het 50.97 51 34.93 1.19 +chr8 42163991 42163991 C A het 277.58 65 25.51 4.27 +chr8 42166548 42166548 G T unknown 33.37 139 30.77 0.88 +chr8 42174380 42174380 G A unknown 168.99 76 37.35 11.27 +chr8 42175142 42175142 C A unknown 63.56 98 27.10 1.48 +chr8 42183358 42183358 A C het 99.67 27 20.34 4.33 +chr8 42188512 42188512 A G unknown 30.41 66 27.67 0.58 +chr8 42234506 42234506 C G unknown 42.68 132 31.77 0.66 +chr8 42401522 42401522 G T het 53.09 83 25.54 1.61 +chr8 42585736 42585736 G C het 1140.58 90 35.66 12.67 +chr8 42608199 42608199 G C het 158.87 21 33.38 7.94 +chr8 48196478 48196478 A T hom 57 5 27.28 19.00 +chr8 48353122 48353122 A G het 182.14 82 29.11 3.14 +chr8 48511561 48511561 A T het 192.78 102 30.69 2.57 +chr8 48625400 48625400 C G het 58.65 162 32.79 0.77 +chr8 48774963 48774963 C A unknown 100.70 178 31.33 1.36 +chr8 48846514 48846514 G A het 31.46 128 27.87 0.34 +chr8 48852328 48852328 C T het 484.79 63 36.92 12.76 +chr8 48882685 48882685 A G het 37.76 54 29.46 1.05 +chr8 49985475 49985475 G T het 56.32 164 34.31 0.45 +chr8 50265283 50265283 G A hom 196.85 17 22.46 14.06 +chr8 51449360 51449360 T G het 38.20 191 34.68 0.45 +chr8 51617003 51617003 G T hom 222.40 11 29.26 24.71 +chr8 52370326 52370326 T C het 72.14 72 31.38 4.24 +chr8 52634348 52634348 G A hom 535.73 42 22.18 12.76 +chr8 53028828 53028828 A C unknown 42.99 195 36.60 1.13 +chr8 53077872 53077872 A C het 111.99 54 25.54 2.07 +chr8 53574201 53574201 T G het 1915.58 163 33.00 11.75 +chr8 53888488 53888488 A G het 103.86 57 32.98 1.89 +chr8 54142426 54142426 T G unknown 37.74 80 29.77 0.64 +chr8 55049777 55049777 G A het 58.20 90 28.52 0.90 +chr8 55501638 55501638 G C hom 43.01 13 14.56 6.14 +chr8 56362450 56362450 G C het 61.96 36 30.75 2.38 +chr8 56364813 56364813 T A hom 46.48 56 21.30 1.11 +chr8 56755188 56755188 A G hom 389.51 16 25.31 24.34 +chr8 57354445 57354445 T G het 90.29 119 21.42 1.06 +chr8 57501364 57501364 T G hom 125.54 38 22.21 3.30 +chr8 61765419 61765419 G A het 1076.99 385 38.88 12.82 +chr8 61768478 61768479 AG - het 331.56 76 23.72 4.36 +chr8 62212776 62212776 G T het 59.28 130 33.67 0.61 +chr8 63057246 63057246 A G hom 62.85 14 19.60 8.98 +chr8 63951237 63951237 C T hom 56.22 7 21.26 9.37 +chr8 67369184 67369184 C T het 1045.79 190 33.63 8.17 +chr8 67369352 67369352 C A unknown 37.99 495 35.53 0.36 +chr8 67771809 67771809 T G unknown 41.56 128 34.91 0.87 +chr8 67958022 67958022 A C het 30.57 105 33.69 0.62 +chr8 68112596 68112596 G A het 200.59 55 33.56 3.65 +chr8 68163741 68163741 T A het 74.58 85 32.19 2.19 +chr8 68989661 68989661 G T unknown 170.11 172 38.88 5.67 +chr8 68989780 68989780 C G unknown 80.76 79 31.92 1.92 +chr8 68999938 68999938 C T unknown 1091.79 186 39.20 8.33 +chr8 70476419 70476419 G C het 147.93 164 37.39 1.26 +chr8 72111641 72111641 G T unknown 45.11 44 31.24 2.26 +chr8 72184167 72184167 T A het 93.24 189 37.77 0.49 +chr8 73149156 73149156 - T hom 382.19 28 26.27 15.29 +chr8 73921090 73921090 T C unknown 38.75 38 35.39 3.23 +chr8 73993478 73993478 T G het 90.66 77 41.20 1.18 +chr8 74205711 74205711 T - het 436.76 46 27.55 13.65 +chr8 74502909 74502909 T C hom 234.89 10 31.76 23.49 +chr8 74527996 74527996 C T het 608.45 61 17.97 9.97 +chr8 75157061 75157061 G A het 76.01 139 33.46 1.06 +chr8 75171728 75171728 C T het 56.63 33 22.93 2.10 +chr8 75518147 75518147 C T hom 64.34 24 20.37 6.43 +chr8 75898315 75898315 A C het 227.63 162 29.90 1.41 +chr8 75898571 75898571 T C het 631.80 82 32.19 12.64 +chr8 75925293 75925293 A G hom 378.56 41 23.63 9.23 +chr8 77776318 77776318 C T het 39.78 317 31.85 0.28 +chr8 80065153 80065153 A G unknown 50.01 5 26.64 10.00 +chr8 82513093 82513093 T C unknown 62.65 22 17.00 4.82 +chr8 82530330 82530330 T C het 79.01 49 28.91 1.61 +chr8 82720107 82720107 T C hom 144.46 163 10.89 1.85 +chr8 86041478 86041478 A C het 112.60 280 30.76 0.57 +chr8 87060894 87060894 A T het 147.62 125 28.29 2.20 +chr8 87570436 87570436 T C het 66.24 67 34.02 1.58 +chr8 87638233 87638233 A G unknown 61.77 72 28.19 1.54 +chr8 87670824 87670824 A T het 34.78 37 17.01 1.66 +chr8 88801924 88801924 T A unknown 154.68 41 26.89 4.99 +chr8 91029628 91029628 G A het 59.64 114 35.64 1.27 +chr8 91657421 91657421 A G het 284.40 114 30.59 3.43 +chr8 92083424 92083424 A G het 4014.01 271 30.26 14.81 +chr8 92374534 92374534 G T het 30.51 93 23.59 0.36 +chr8 94784856 94784856 C T unknown 57.03 103 27.71 1.43 +chr8 94793938 94793938 T A unknown 85.30 76 36.24 1.81 +chr8 95531100 95531100 T C unknown 116.63 86 26.99 2.43 +chr8 95700594 95700594 T C het 31.19 52 29.13 0.89 +chr8 95861724 95861724 C G het 296.58 109 32.90 2.72 +chr8 95886864 95886864 T A het 103.02 70 27.90 2.34 +chr8 95906554 95906554 C G hom 1982.41 62 34.71 31.97 +chr8 95951909 95951912 AGAC - het 573.18 72 17.78 7.96 +chr8 96047725 96047725 T C het 144.75 123 34.59 1.83 +chr8 96070181 96070181 T C hom 1952.14 61 34.18 32.00 +chr8 97157113 97157113 T A het 139.05 40 25.86 3.48 +chr8 98718878 98718878 A T het 183.57 265 32.80 1.64 +chr8 99019930 99019930 G A het 421.99 137 34.50 11.11 +chr8 99118622 99118622 A C het 1363.58 145 30.48 9.40 +chr8 99121037 99121037 T G het 128.72 105 30.25 1.23 +chr8 99961544 99961544 G C unknown 47.99 192 28.61 1.04 +chr8 100050688 100050688 T G het 115.93 66 29.10 1.93 +chr8 100990337 100990337 T A het 30.13 46 24.65 0.91 +chr8 101053980 101053980 C T het 1062.72 105 33.18 10.12 +chr8 101117554 101117554 T G unknown 79.31 52 19.72 2.48 +chr8 101612715 101612715 A T unknown 51.51 95 34.89 0.76 +chr8 101730301 101730301 C T het 109.93 87 22.28 2.04 +chr8 102589669 102589669 A C unknown 87.30 148 30.39 0.72 +chr8 103359355 103359355 A T het 135.31 161 29.54 0.84 +chr8 103855691 103855691 C T unknown 255.84 33 32.45 12.79 +chr8 104419902 104419902 T A unknown 69.95 139 35.81 0.74 +chr8 104427359 104427359 A C unknown 593.79 130 29.46 6.00 +chr8 107371924 107371924 C A het 2949.57 171 36.01 17.25 +chr8 109215606 109215606 T A het 115.59 63 27.44 1.89 +chr8 109391566 109391566 G C unknown 39.65 75 25.61 1.04 +chr8 109465444 109465444 T G het 55.72 33 24.44 1.69 +chr8 110255501 110255501 T C unknown 223.11 211 21.22 1.34 +chr8 110301998 110301998 T C het 642.79 80 30.24 11.48 +chr8 110454273 110454273 A C unknown 33.26 326 34.61 0.22 +chr8 110465014 110465014 C T unknown 39.06 177 29.64 0.72 +chr8 110489620 110489620 A T het 1748.79 164 36.26 10.66 +chr8 110491964 110491964 A G het 175.58 20 33.13 8.78 +chr8 113303909 113303909 T A het 182.02 154 25.94 1.18 +chr8 117862767 117862767 T G het 181.59 101 24.76 1.80 +chr8 119396007 119396007 C T hom 49.01 7 21.06 24.50 +chr8 119592906 119592906 A C unknown 55.46 94 28.61 1.29 +chr8 120435062 120435062 T G het 146.63 63 17.55 2.33 +chr8 120492809 120492809 A C het 375.18 86 17.59 4.36 +chr8 120613061 120613061 A T het 34.44 35 18.46 1.44 +chr8 120628436 120628436 A T het 99.17 70 31.82 1.50 +chr8 121021343 121021343 A G het 422.72 108 34.32 3.91 +chr8 121823891 121823891 T C het 72.60 22 28.76 3.82 +chr8 124114560 124114560 T C het 376.55 121 37.16 5.62 +chr8 124448651 124448651 T G het 122.58 72 34.30 1.70 +chr8 124593543 124593543 C T unknown 46.01 5 23.65 9.20 +chr8 124710729 124710729 C T het 693.55 164 29.94 8.78 +chr8 125033678 125033678 G A het 827.58 114 25.48 7.26 +chr8 125115420 125115420 G A het 856.99 348 34.96 10.58 +chr8 125154881 125154881 C G unknown 60.30 82 23.92 1.51 +chr8 125534324 125534324 A G hom 137.12 25 21.04 5.48 +chr8 126448550 126448550 T C unknown 215.55 255 36.61 1.74 +chr8 128099166 128099166 C T het 270.86 80 19.57 3.39 +chr8 128428656 128428656 A C hom 47.98 66 13.38 1.37 +chr8 130760774 130760774 C T hom 2971.56 249 34.87 16.06 +chr8 133022933 133022933 T G het 69.26 100 31.82 0.79 +chr8 133062132 133062132 A G unknown 33.82 90 23.73 0.85 +chr8 133883545 133883545 T G het 422.58 87 31.98 4.86 +chr8 133900605 133900605 A G unknown 84.81 152 31.00 1.12 +chr8 133960936 133960936 T C het 2272.58 151 35.18 15.05 +chr8 133961011 133961011 T C unknown 921.99 261 37.49 14.18 +chr8 134042207 134042207 G C het 50.67 121 32.04 0.72 +chr8 134233006 134233006 C G unknown 141.28 81 29.56 2.39 +chr8 134271387 134271387 A T het 156.61 131 28.72 1.20 +chr8 134420845 134420845 A C unknown 51.76 281 8.61 0.73 +chr8 134975241 134975241 A T het 33.86 45 28.85 0.97 +chr8 135991148 135991148 C T het 48.72 37 26.88 1.68 +chr8 139151300 139151300 A G het 73.28 110 36.14 0.90 +chr8 139165272 139165272 T C unknown 354.79 106 29.70 5.00 +chr8 139618754 139618754 T C unknown 387.40 55 31.59 9.01 +chr8 139635920 139635920 T A het 6748.01 237 35.14 28.47 +chr8 139809173 139809173 A C het 137.65 181 28.13 0.76 +chr8 139946839 139946839 A C hom 38.01 7 17.26 9.50 +chr8 140347881 140347881 A C hom 46.01 3 30.39 23.00 +chr8 141297746 141297746 C T het 584.58 215 35.17 2.72 +chr8 141549326 141549326 C T het 471.79 69 31.58 10.04 +chr8 141744750 141744750 G C het 72.82 96 31.51 0.88 +chr8 141745387 141745387 T G het 286.93 61 29.46 6.52 +chr8 141779826 141779826 C A het 242.80 98 27.16 3.47 +chr8 141900708 141900708 A G het 47.84 195 35.93 0.56 +chr8 142170822 142170822 T G unknown 30.13 74 28.92 0.54 +chr8 142186912 142186912 C G het 44.97 61 25.12 0.74 +chr8 142476564 142476564 T A het 82 22 28.10 5.86 +chr8 142681271 142681271 A G unknown 30.02 5 17.78 6.00 +chr8 142840582 142840582 A G unknown 67.25 8 23.52 9.61 +chr8 142988657 142988657 G A unknown 48.77 2 37.01 24.38 +chr8 143352978 143352978 T G hom 625.64 22 32.06 28.44 +chr8 143558780 143558780 C A unknown 34.01 79 31.42 0.85 +chr8 143614932 143614932 G A het 95.99 64 28.66 8.73 +chr8 143853429 143853429 C T het 271.77 249 18.69 1.09 +chr8 143867045 143867045 G C het 103.12 65 31.57 3.44 +chr8 143998662 143998662 G A het 82.99 69 23.22 5.93 +chr8 144391728 144391728 A G unknown 1925.56 132 39.88 18.88 +chr8 144400231 144400231 A C het 68.58 107 33.55 1.37 +chr8 144459559 144459559 C G unknown 78.85 69 30.20 1.43 +chr8 144621299 144621299 G C het 184.79 118 28.17 2.03 +chr8 144652899 144652899 G C unknown 99.11 56 32.77 2.20 +chr8 144659625 144659625 G T het 44.05 14 30.00 8.81 +chr8 144660189 144660189 A G hom 145.71 24 33.00 9.11 +chr8 144671777 144671777 C G het 33.37 38 26.42 1.11 +chr8 144672032 144672032 G T het 194.83 55 25.33 3.54 +chr8 144803885 144803885 G C het 47.72 90 24.67 0.77 +chr8 144812376 144812376 A G unknown 56.08 64 24.52 1.52 +chr8 144875029 144875029 C G unknown 49 21 25.76 6.12 +chr8 144902918 144902918 T A het 1146.58 306 37.94 3.75 +chr8 144919133 144919133 A T het 119.59 93 25.70 1.29 +chr8 144940730 144940730 A G unknown 193.91 100 23.03 2.52 +chr8 144945191 144945191 T C hom 583.90 86 22.62 8.71 +chr8 144991975 144991975 A G het 114.95 78 26.93 1.88 +chr8 144993324 144993324 C T het 891.79 180 33.00 6.97 +chr8 145001588 145001588 C T het 69.44 34 22.57 2.89 +chr8 145056962 145056962 A C hom 585.58 50 22.62 11.71 +chr8 145114454 145114454 G A het 173.40 54 21.19 4.13 +chr8 145245944 145245944 A G hom 1185.20 40 33.23 29.63 +chr8 145579994 145579994 G A het 30.99 70 26.97 0.56 +chr8 145580190 145580190 A G het 84.20 99 31.50 1.24 +chr8 145640327 145640327 A G unknown 35.82 69 27.03 1.05 +chr8 145665516 145665516 T C hom 2788.98 104 29.39 26.82 +chr8 145689366 145689366 G C het 75.62 49 32.06 1.54 +chr8 145730330 145730330 G A het 4952.01 184 31.01 26.91 +chr8 145737816 145737816 C T het 705.82 35 28.78 20.17 +chr8 145741412 145741412 A C het 711.58 167 35.68 4.26 +chr8 145741765 145741765 G A het 1010.59 55 28.14 18.37 +chr8 145746497 145746497 A T het 108.75 85 26.87 1.28 +chr8 145749369 145749369 A C het 125.60 72 25.12 1.74 +chr8 146028922 146028922 G C het 109.05 56 23.92 1.95 +chr9 421032 421032 C G het 5114.01 180 33.47 28.41 +chr9 432153 432153 T G het 36.40 44 20.96 0.93 +chr9 463717 463717 T C unknown 53.62 80 31.52 1.49 +chr9 659979 659979 C G het 78.78 34 28.75 4.92 +chr9 712060 712060 G C unknown 1989.56 165 36.77 17.45 +chr9 2101545 2101545 T A hom 596.59 66 27.24 11.93 +chr9 2182053 2182053 G T het 49.50 90 30.32 0.82 +chr9 2718651 2718651 C A het 264.58 58 32.91 4.56 +chr9 2729792 2729792 T A het 402.99 123 35.09 12.21 +chr9 2875963 2875963 C A het 567.58 125 28.53 4.54 +chr9 2876109 2876109 C G het 408.79 149 21.40 3.89 +chr9 2943518 2943518 - CT hom 1000.52 77 26.92 17.55 +chr9 3225160 3225160 A G het 38.44 64 28.93 1.48 +chr9 3829631 3829631 C T unknown 248.70 10 32.73 24.87 +chr9 4117713 4117713 C T unknown 326.99 190 38.37 7.60 +chr9 6589361 6589361 C G unknown 53.03 33 17.60 2.21 +chr9 8376030 8376030 C G het 178.64 106 26.70 1.69 +chr9 11012023 11012023 C A het 103.86 21 26.55 5.47 +chr9 11256710 11256710 T C hom 36.17 33 15.62 1.90 +chr9 11256719 11256719 T G het 110.03 44 18.55 2.50 +chr9 13126470 13126470 C G het 256.90 39 42.18 10.70 +chr9 13157999 13157999 G C unknown 56.99 211 39.30 1.97 +chr9 13162812 13162812 C T het 280.02 172 33.11 1.63 +chr9 14784492 14784492 C T het 93.80 296 36.00 0.43 +chr9 14792791 14792793 TCT - unknown 3389 172 34.23 28.97 +chr9 14819503 14819503 C G het 114.36 59 24.55 2.33 +chr9 14848915 14848915 T A hom 555.58 37 32.23 15.02 +chr9 15035960 15035960 T C unknown 102 47 36.96 9.27 +chr9 15191109 15191109 G T het 126.68 53 34.48 2.39 +chr9 15361770 15361770 A G het 90.05 186 12.80 1.77 +chr9 15447361 15447361 - ACT hom 2282.12 90 28.91 25.36 +chr9 15777865 15777865 T A unknown 759.79 92 34.89 11.34 +chr9 18718186 18718186 A G het 154.56 360 13.61 0.82 +chr9 18776936 18776936 G C unknown 32.74 70 27.50 0.53 +chr9 18928478 18928478 G A unknown 253.85 107 34.49 2.99 +chr9 19027571 19027571 C A het 90.99 95 29.29 5.06 +chr9 19063108 19063108 T C het 297.81 22 24.26 14.18 +chr9 19119554 19119554 G A het 39.40 60 20.33 0.72 +chr9 19119768 19119768 T G het 326.58 171 21.78 1.91 +chr9 20622169 20622169 G A het 65.74 25 19.86 2.63 +chr9 20821218 20821218 G T hom 33.01 5 18.97 8.25 +chr9 20976298 20976298 C T hom 811.56 57 34.89 19.32 +chr9 21007124 21007124 A C het 88.53 134 35.02 0.95 +chr9 21968159 21968159 G A het 143.99 92 35.55 7.20 +chr9 25498728 25498728 T C hom 118.70 11 26.12 10.79 +chr9 27203166 27203166 A C het 46.25 76 38.06 0.76 +chr9 27218726 27218726 C T hom 2464.98 91 30.18 27.09 +chr9 27289832 27289832 G T het 409.58 54 33.03 7.58 +chr9 27353460 27353460 A G hom 37.01 10 14.62 7.40 +chr9 27467670 27467670 G A unknown 52.01 5 26.41 13.00 +chr9 27561612 27561612 A G het 300.43 50 28.98 6.01 +chr9 30689609 30689609 A G het 49.13 264 10.50 0.40 +chr9 30690117 30690117 C G het 63.26 86 11.28 1.05 +chr9 31254116 31254116 G T het 96.99 134 22.23 3.46 +chr9 32418237 32418237 G T hom 811.60 66 37.70 12.30 +chr9 32473014 32473014 G T het 108.73 78 31.91 1.49 +chr9 32946852 32946852 G C hom 665.41 111 15.00 5.99 +chr9 33001673 33001673 C A het 408.73 44 27.31 12.77 +chr9 33026572 33026572 T C het 105.72 143 23.76 0.82 +chr9 33245245 33245245 T A het 99.77 68 33.98 2.43 +chr9 33246660 33246660 C T het 359.87 198 33.15 2.52 +chr9 33255361 33255361 C A het 53.25 88 29.35 0.79 +chr9 33264540 33264540 C G unknown 52.22 6 23.08 13.05 +chr9 33342841 33342841 G A het 35.70 75 35.50 0.94 +chr9 33384914 33384914 A G unknown 38.09 95 9.43 0.79 +chr9 33442114 33442114 A C unknown 243 145 33.58 5.79 +chr9 33465862 33465862 G T het 70.38 87 31.52 1.72 +chr9 33571946 33571946 C T hom 219.55 34 17.73 6.46 +chr9 33798414 33798414 C T het 350.68 167 13.51 2.10 +chr9 33798832 33798832 C - hom 206.73 22 15.07 12.16 +chr9 33941712 33941712 C T unknown 74.99 151 39.42 3.00 +chr9 34256006 34256006 G T unknown 123.80 189 28.11 0.90 +chr9 34256347 34256347 C T het 987.58 93 35.89 10.62 +chr9 34319225 34319225 T C unknown 40.74 113 22.25 0.47 +chr9 34401180 34401180 T G unknown 101.01 70 34.33 4.81 +chr9 34583096 34583096 T C het 89.32 17 20.23 5.95 +chr9 34656946 34656946 T A het 53.21 155 34.24 0.49 +chr9 35045347 35045347 G A het 49.88 190 24.00 0.26 +chr9 35068171 35068171 A T het 187.79 323 33.88 0.78 +chr9 35074917 35074917 T C hom 1111.61 190 38.58 8.36 +chr9 35377516 35377516 T G het 46.06 119 23.64 1.77 +chr9 35378413 35378413 T C unknown 249.79 186 30.59 1.77 +chr9 35557974 35557974 A T het 121.61 108 23.13 1.13 +chr9 35618053 35618053 C A unknown 1601.99 431 38.17 17.80 +chr9 35663228 35663228 G C unknown 556.79 126 39.87 6.33 +chr9 35679981 35679981 G A het 401.70 110 26.11 4.56 +chr9 35681122 35681122 C A unknown 53.99 52 33.91 4.50 +chr9 35706453 35706453 T A unknown 59.73 51 22.22 1.46 +chr9 35737379 35737379 A G het 118.93 110 28.33 1.08 +chr9 35752252 35752252 G A het 549.28 28 28.28 19.62 +chr9 35792899 35792899 G A het 35.83 99 23.13 0.64 +chr9 35811151 35811151 A G het 1236.58 276 31.09 4.48 +chr9 36060039 36060039 T C het 183.40 47 24.85 4.27 +chr9 36170281 36170281 A C het 39.43 89 31.05 0.90 +chr9 36246522 36246522 A T het 84.84 49 21.70 2.36 +chr9 37014939 37014939 A G het 242.86 193 34.42 1.26 +chr9 37033861 37033861 A C unknown 31.51 12 21.95 7.88 +chr9 37429805 37429805 G T het 513.69 116 26.42 4.43 +chr9 37517681 37517681 C G unknown 52.01 7 22.32 8.67 +chr9 37537557 37537557 G A het 1907.79 115 26.66 16.59 +chr9 37745130 37745130 A G unknown 45.56 247 32.20 0.49 +chr9 38411345 38411345 A G het 977.58 96 35.22 10.18 +chr9 38616092 38616092 C A het 98.69 217 12.28 0.45 +chr9 39118205 39118205 G T het 44.91 57 16.53 0.79 +chr9 42718231 42718231 C T hom 32.28 16 18.71 10.76 +chr9 43032085 43032085 G A het 39.69 7 23.15 7.94 +chr9 43629310 43629310 C A het 124.87 108 10.16 1.69 +chr9 46115501 46115501 T A het 265.40 119 11.79 2.23 +chr9 67038656 67038656 C A unknown 56.01 53 8.11 2.15 +chr9 68371753 68371753 A G unknown 35.32 55 10.95 0.91 +chr9 68433422 68433422 C T het 86.65 70 17.69 1.24 +chr9 69067830 69067830 T C het 340.23 114 11.23 2.98 +chr9 69423792 69423792 A T hom 735.33 195 10.52 3.77 +chr9 69423821 69423821 C T hom 337.84 87 13.88 3.88 +chr9 71491523 71491523 A T het 160.03 91 36.44 1.76 +chr9 71864335 71864335 G A het 191.69 43 33.49 4.46 +chr9 72002915 72002915 G A het 30.56 199 33.47 0.30 +chr9 72003036 72003036 T C het 937.79 143 37.61 10.19 +chr9 72333207 72333207 G T het 116.60 118 29.22 0.99 +chr9 72472909 72472909 A G unknown 75.29 98 34.34 2.28 +chr9 72962904 72962904 T G het 34.91 68 26.35 0.74 +chr9 73002769 73002769 T A unknown 45.46 81 22.64 1.11 +chr9 73457861 73457861 A G het 1860.83 99 30.69 18.80 +chr9 74360469 74360469 C T unknown 44.08 161 36.87 1.84 +chr9 74842939 74842939 T G het 192.72 87 33.98 2.22 +chr9 75445667 75445667 T A hom 42.83 31 22.81 2.38 +chr9 75526799 75526799 A T unknown 98.79 88 32.15 1.62 +chr9 77423160 77423160 G T het 162.85 100 33.92 1.63 +chr9 78506167 78506167 G C unknown 37.52 55 19.59 1.17 +chr9 78936205 78936205 A G hom 237.25 19 38.04 18.25 +chr9 78938186 78938186 G C hom 1489.56 125 37.69 16.55 +chr9 79318812 79318812 C T het 1683.99 504 36.78 12.29 +chr9 80793401 80793401 C T het 64.15 45 18.11 1.94 +chr9 80863803 80863803 T G het 446.58 100 28.02 4.47 +chr9 82465916 82465916 C A het 262.58 98 20.48 2.68 +chr9 82465925 82465925 A G het 232.58 101 22.03 2.30 +chr9 84200529 84200529 T C het 154.99 108 29.54 7.05 +chr9 84300694 84300694 A C het 2811.59 111 35.70 25.33 +chr9 84302222 84302222 A G hom 98.31 18 16.09 5.46 +chr9 84603829 84603829 G C het 140.10 249 15.00 0.69 +chr9 85615303 85615303 A C het 410.58 95 28.59 4.32 +chr9 85615442 85615442 A C het 133.59 95 25.81 1.41 +chr9 85905737 85905737 C G het 183.59 66 30.66 2.78 +chr9 85905759 85905759 G T unknown 33.65 40 27.19 1.60 +chr9 85987880 85987880 A - het 172.78 109 25.69 2.93 +chr9 86587617 86587617 G A het 66.53 29 19.56 3.33 +chr9 86900510 86900510 T C unknown 35.53 125 35.04 0.38 +chr9 88190412 88190412 G A unknown 656.79 145 31.69 6.70 +chr9 88650020 88650020 T C unknown 97.09 173 31.58 1.21 +chr9 89627975 89627975 G T het 46.17 107 19.42 0.43 +chr9 90315286 90315286 G A het 827.79 99 34.67 11.66 +chr9 90432159 90432159 G A het 142.81 97 18.61 2.27 +chr9 90501271 90501271 G A het 556.58 168 18.08 3.31 +chr9 90584946 90584946 T A het 88.65 42 17.10 2.96 +chr9 91953672 91953672 T C hom 105.45 21 20.35 11.72 +chr9 91978916 91978916 A T unknown 92.18 112 30.66 1.07 +chr9 92008507 92008507 G T het 40.90 117 34.95 0.82 +chr9 94087793 94087793 T C het 172.62 26 36.79 13.28 +chr9 94519576 94519576 A T unknown 90.25 142 30.13 0.83 +chr9 94843154 94843154 T C unknown 105.16 55 29.07 2.34 +chr9 95298266 95298266 T C het 527.58 168 34.13 3.14 +chr9 95618018 95618018 A C unknown 43.41 137 33.46 0.69 +chr9 95645020 95645020 A C unknown 87.99 263 15.96 1.76 +chr9 95649159 95649159 C A het 94.67 315 11.42 0.30 +chr9 95649260 95649260 T C het 74.07 276 7.84 0.27 +chr9 95838178 95838178 G T unknown 108.58 115 34.06 1.70 +chr9 96026253 96026253 A C het 48.48 69 34.26 1.56 +chr9 96069087 96069087 C A het 82.80 141 25.37 0.79 +chr9 96213667 96213667 C T unknown 78.03 23 21.66 5.20 +chr9 96715427 96715427 A C hom 42.01 14 18.73 7.00 +chr9 97050295 97050295 A G hom 123.75 83 10.28 1.96 +chr9 97063226 97063226 T G unknown 43.61 192 24.76 0.43 +chr9 97087561 97087561 A T unknown 53.75 70 19.33 0.93 +chr9 97090990 97090990 C G het 50.10 65 15.45 1.00 +chr9 97321127 97321127 T C hom 644.71 43 35.85 14.99 +chr9 97333843 97333843 A G het 81.85 99 27.90 1.14 +chr9 97405431 97405431 T A hom 32.02 10 19.27 4.57 +chr9 97522750 97522750 A G het 322.93 114 34.02 2.83 +chr9 97535495 97535495 T G het 150.59 122 25.79 1.23 +chr9 97848308 97848308 G A unknown 50.56 64 28.07 1.53 +chr9 97873823 97873823 T C het 82.20 151 29.76 1.01 +chr9 98003046 98003046 T A unknown 46.65 101 26.59 1.11 +chr9 98678556 98678556 T A unknown 45.08 163 32.14 1.16 +chr9 99060882 99060882 G A unknown 99.62 12 25.87 12.45 +chr9 99413620 99413620 A T het 84.38 98 30.70 2.28 +chr9 99798824 99798824 G T het 104.67 113 23.81 0.93 +chr9 99799104 99799104 T G unknown 343.83 56 24.68 9.55 +chr9 100331108 100331108 A T unknown 186.55 102 34.43 3.52 +chr9 100819070 100819070 T G unknown 148.01 38 36.31 16.45 +chr9 100823084 100823084 T C unknown 676.99 260 37.91 11.88 +chr9 100857157 100857157 A G unknown 90.97 149 38.90 0.81 +chr9 100894467 100894467 C T het 47.32 43 29.00 1.48 +chr9 100900112 100900112 C - het 150.56 14 30.81 15.06 +chr9 100919994 100919994 G T het 145.41 110 36.64 1.32 +chr9 101777733 101777733 C T unknown 56.23 98 29.73 1.12 +chr9 101809995 101809995 G A het 737.99 226 37.13 15.70 +chr9 101829092 101829092 A T unknown 77.59 66 35.32 2.50 +chr9 102067499 102067499 T G het 156.72 126 29.79 1.24 +chr9 102068058 102068058 A G hom 831.56 177 18.12 6.65 +chr9 104071364 104071364 G T unknown 153.29 50 34.54 10.95 +chr9 104432514 104432514 A C unknown 113.09 265 32.48 0.81 +chr9 104433347 104433347 G A het 1509.79 183 41.18 11.98 +chr9 104449538 104449538 C A het 237.59 65 26.16 3.66 +chr9 107515213 107515213 C T het 114.74 102 23.86 1.57 +chr9 107546545 107546545 G C het 553.99 122 33.90 7.01 +chr9 107549216 107549216 G T unknown 125.55 207 39.17 1.44 +chr9 107568664 107568664 A C het 158.21 67 28.66 3.16 +chr9 107580991 107580991 G T het 201.72 150 32.56 1.82 +chr9 107582311 107582311 C A het 1269.58 253 35.55 5.02 +chr9 109690141 109690141 G C het 317.55 443 38.28 1.51 +chr9 109697876 109697876 A C het 483.58 89 25.97 5.43 +chr9 109734598 109734598 C T het 115.75 55 19.05 2.10 +chr9 111625933 111625933 C T unknown 39.23 50 24.77 1.78 +chr9 111670707 111670707 T C hom 2200.99 73 34.43 30.15 +chr9 111808437 111808437 C A unknown 182.99 94 33.97 7.62 +chr9 111970046 111970046 A T hom 287.07 13 32.72 23.92 +chr9 112005872 112005872 G C unknown 31.35 93 30.16 0.63 +chr9 112899702 112899702 T G het 309.58 152 27.33 2.04 +chr9 113099991 113099991 T C het 47.31 70 31.64 0.97 +chr9 113137563 113137568 TCTGAG - het 1323.07 32 30.62 41.35 +chr9 113151713 113151713 T C unknown 161.99 105 32.68 7.36 +chr9 113191620 113191620 G T unknown 43.99 179 33.10 2.44 +chr9 114154120 114154120 A C het 182.02 178 29.07 1.02 +chr9 114176890 114176890 C A het 43.73 198 31.55 0.50 +chr9 114303963 114303963 G T het 48.82 141 34.73 0.46 +chr9 114804116 114804116 G T het 192.45 79 30.50 2.44 +chr9 114986021 114986021 - AGAA het 1490.04 45 26.00 33.11 +chr9 115422115 115422115 C G unknown 47.25 80 31.08 2.36 +chr9 116045828 116045828 T C unknown 57.99 152 36.24 1.45 +chr9 116122875 116122875 A C het 70.74 47 37.43 1.77 +chr9 116794938 116794938 C A het 367.62 194 23.45 1.89 +chr9 116859489 116859489 T A hom 53.30 25 20.79 2.67 +chr9 117027768 117027768 T C het 206.78 60 24.51 3.45 +chr9 117046170 117046170 G A het 180.34 20 36.86 9.02 +chr9 117053169 117053169 C T hom 31.02 6 20.42 7.75 +chr9 117458547 117458547 G C unknown 64.42 142 14.20 0.60 +chr9 117568047 117568047 T A het 30.79 51 32.65 1.40 +chr9 117849314 117849314 T C het 313.99 183 35.68 7.66 +chr9 119187788 119187788 A T het 117.83 68 28.69 1.73 +chr9 119413901 119413901 G T het 47.85 124 31.10 0.39 +chr9 119461264 119461264 G T unknown 41.63 267 39.84 0.33 +chr9 119738934 119738934 A G unknown 66.55 117 31.99 1.04 +chr9 121526451 121526451 T G hom 126.04 28 28.09 6.30 +chr9 121970957 121970957 G C het 277.60 58 31.51 4.79 +chr9 123291036 123291036 C G hom 1150.34 57 31.54 20.18 +chr9 123367799 123367799 A T het 491.58 135 31.73 3.64 +chr9 123632655 123632655 G A het 184.63 88 22.93 2.10 +chr9 123676447 123676447 A C unknown 34.02 74 24.79 1.62 +chr9 123724902 123724902 G C unknown 32.18 73 20.66 0.61 +chr9 123753600 123753600 G T het 1849.58 147 34.62 12.58 +chr9 123880570 123880570 T C het 1479.58 116 32.76 12.76 +chr9 124076226 124076226 G T het 109.24 114 32.26 1.15 +chr9 124089668 124089668 C T het 86.07 53 25.84 2.10 +chr9 124089669 124089669 A G unknown 74.62 55 25.75 1.87 +chr9 124222228 124222228 C A unknown 193.99 62 37.41 17.64 +chr9 124282707 124282707 C T unknown 32.69 33 25.20 2.72 +chr9 124545868 124545868 T A het 30.92 133 27.99 0.51 +chr9 124751312 124751312 C T unknown 81.99 80 32.98 4.10 +chr9 125033161 125033161 G C unknown 46.81 244 19.62 0.27 +chr9 125047465 125047465 G T het 117.65 222 28.82 1.09 +chr9 125047561 125047561 C T het 71.94 141 21.69 0.51 +chr9 125154881 125154881 T G het 76.54 82 35.31 1.32 +chr9 126129904 126129904 C T het 182.37 12 27.56 16.58 +chr9 127619924 127619924 G C unknown 37.87 91 36.49 0.90 +chr9 127623600 127623600 A C het 43.10 55 35.45 0.78 +chr9 127662709 127662709 A G het 129.21 88 25.18 2.05 +chr9 127789210 127789210 T G het 46.74 48 26.37 0.97 +chr9 127995962 127995962 C A het 63.72 166 29.45 0.38 +chr9 128069703 128069703 C A het 684.79 80 38.82 12.68 +chr9 128086017 128086017 A C unknown 73.73 69 32.33 1.84 +chr9 128099612 128099612 C T het 121.17 189 32.72 0.88 +chr9 128246786 128246786 G A unknown 1767.56 147 33.88 17.50 +chr9 128692159 128692159 C A het 85.15 99 34.75 1.22 +chr9 128723221 128723221 - A het 137.21 37 33.79 4.90 +chr9 130119426 130119426 G A het 330.79 76 30.75 6.13 +chr9 130169874 130169874 A G unknown 53.13 15 30.13 7.59 +chr9 130191235 130191235 C T het 342.02 67 27.35 5.10 +chr9 130198100 130198100 A G hom 1390.57 102 32.77 13.63 +chr9 130259618 130259618 A C hom 1749 66 30.15 26.50 +chr9 130444886 130444886 A C het 327.79 45 23.76 7.28 +chr9 130476228 130476228 C G het 222.83 100 27.33 2.23 +chr9 130524817 130524817 C T hom 861.38 45 24.61 19.14 +chr9 130548900 130548900 C A hom 102.54 24 21.43 6.41 +chr9 130566489 130566489 T C het 129.88 60 32.31 2.16 +chr9 130670532 130670532 C T hom 312.64 17 28.01 18.39 +chr9 130861043 130861043 A C het 525.58 86 28.37 6.11 +chr9 130864608 130864608 G C het 32.26 46 24.74 1.11 +chr9 130868366 130868366 G A het 76.44 113 28.62 1.50 +chr9 130868769 130868769 C A het 425.58 128 27.04 3.32 +chr9 130887587 130887587 G T het 582.84 47 26.58 12.40 +chr9 130914170 130914170 C G hom 1746.57 131 33.47 13.33 +chr9 130928919 130928919 G T het 79.35 31 23.24 3.61 +chr9 130940822 130940822 C T hom 3233.06 98 33.47 32.99 +chr9 130982564 130982564 T A unknown 77 306 34.92 0.88 +chr9 131008767 131008767 T G het 130.47 90 33.50 1.81 +chr9 131022416 131022416 T G het 248.82 212 22.48 1.56 +chr9 131040874 131040874 T C unknown 1377.56 107 36.61 19.40 +chr9 131110892 131110892 G A unknown 745.79 126 34.00 8.20 +chr9 131245067 131245067 G A het 44.56 54 33.25 1.44 +chr9 131456828 131456828 C T hom 42.90 69 22.78 0.62 +chr9 131495778 131495778 C A unknown 33.18 41 24.72 1.07 +chr9 131554718 131554718 G A het 35.67 52 20.22 1.23 +chr9 131585069 131585069 A G het 581.58 51 29.56 11.40 +chr9 131588652 131588652 T C hom 2919.98 105 31.34 27.81 +chr9 131597947 131597947 C G het 59.76 47 28.61 1.27 +chr9 131599008 131599008 C T het 800.58 79 32.13 10.13 +chr9 131708447 131708447 A C unknown 57.96 239 39.47 0.95 +chr9 131756819 131756819 T G unknown 45.18 169 37.06 1.74 +chr9 131776947 131776947 A C unknown 60.99 87 28.27 2.26 +chr9 131860437 131860437 A C het 43.01 121 33.57 0.48 +chr9 131862781 131862781 G A hom 1184.09 66 26.56 17.94 +chr9 131864677 131864677 A C het 87.26 143 28.80 0.89 +chr9 132341291 132341291 A C unknown 36.26 7 22.36 7.25 +chr9 132569750 132569750 C G unknown 278.79 56 35.02 7.34 +chr9 132580686 132580686 G C unknown 1237.79 135 32.46 13.17 +chr9 132620707 132620707 T C hom 1401.99 70 30.32 20.03 +chr9 132620990 132620990 T C het 2945.46 106 32.87 27.79 +chr9 132623788 132623788 T C unknown 64.56 103 35.51 1.37 +chr9 132842020 132842020 A C het 76.95 97 30.09 1.18 +chr9 133284310 133284310 G A het 245.81 15 27.41 16.39 +chr9 133578520 133578520 - A het 483.68 152 29.07 4.24 +chr9 133755528 133755528 A G unknown 1717.79 207 38.51 11.15 +chr9 133760409 133760409 G A het 46.87 31 23.73 3.61 +chr9 133914570 133914570 G A het 145.01 50 35.45 9.67 +chr9 133928345 133928345 C T het 846.58 123 33.31 6.88 +chr9 133957619 133957619 C G het 130.40 23 22.73 6.86 +chr9 133960773 133960773 T C unknown 162.68 29 33.16 10.85 +chr9 133963008 133963008 G A hom 935.56 87 33.26 12.99 +chr9 134001276 134001276 C A unknown 51.19 44 35.95 2.05 +chr9 134183379 134183379 C T het 1208.59 58 30.79 20.84 +chr9 134183503 134183503 T C het 1075.58 59 29.29 18.23 +chr9 134323099 134323099 T C unknown 113.62 103 32.57 2.47 +chr9 134369959 134369959 C A het 443.58 68 35.73 6.52 +chr9 134404496 134404496 A C het 81.05 48 18.10 2.32 +chr9 135106054 135106054 T A unknown 134.27 14 19.78 26.85 +chr9 135172442 135172442 C A het 137.38 52 30.88 4.29 +chr9 135202816 135202816 T G het 755.58 153 32.08 4.94 +chr9 135374898 135374898 T C hom 2374.56 223 38.33 15.12 +chr9 135762834 135762834 G C het 196.55 187 29.72 1.42 +chr9 135779805 135779805 G C het 135.60 70 32.19 3.66 +chr9 135786112 135786112 T C het 1138.79 177 37.56 8.76 +chr9 136133381 136133383 GGG - hom 1440.52 103 35.44 22.51 +chr9 136230573 136230573 C A unknown 48.48 47 20.10 1.73 +chr9 136241639 136241639 C T unknown 31.77 10 13.54 6.35 +chr9 136291355 136291355 G A het 121.19 55 31.95 3.56 +chr9 136324142 136324142 A C het 111.68 57 34.60 1.96 +chr9 136333187 136333187 C T het 33.17 25 15.13 2.55 +chr9 136341479 136341479 A G het 327.58 133 31.33 2.46 +chr9 136390116 136390116 T G unknown 124.11 12 28.28 20.68 +chr9 136401606 136401606 A C het 244.80 47 25.19 5.21 +chr9 136507411 136507411 T C het 89.69 69 27.78 1.83 +chr9 136660799 136660799 T A het 42.81 129 31.41 0.62 +chr9 136857246 136857246 G A unknown 49.03 19 21.58 7.00 +chr9 137309189 137309189 T G unknown 75.60 51 28.86 2.61 +chr9 137645585 137645585 G A het 221.64 29 25.23 7.64 +chr9 137717782 137717782 G A het 114.16 48 31.02 3.26 +chr9 137717869 137717869 C T unknown 83.25 13 17.67 7.57 +chr9 137889173 137889173 A G hom 73.22 8 19.95 14.64 +chr9 138395873 138395873 A C het 117.94 91 31.39 1.30 +chr9 138440624 138440624 G C unknown 92.02 113 11.25 1.01 +chr9 138440748 138440748 C T unknown 46.56 18 16.49 7.76 +chr9 138556279 138556279 T G het 54.18 73 20.09 0.95 +chr9 138585620 138585620 G A hom 103.65 21 21.52 7.40 +chr9 138667286 138667286 T A het 255.58 80 26.84 3.19 +chr9 138675905 138675905 G A unknown 35.99 97 33.75 1.44 +chr9 138703177 138703177 T G het 167.93 144 36.31 1.51 +chr9 138773398 138773398 G C unknown 46.31 111 24.36 0.86 +chr9 139113600 139113600 T A het 66.37 59 25.97 1.12 +chr9 139118774 139118774 C T unknown 36.66 57 26.40 1.11 +chr9 139243085 139243085 G T unknown 39.32 15 20.91 5.62 +chr9 139256722 139256722 G C het 42.38 15 19.10 3.85 +chr9 139266496 139266496 C T unknown 146.02 53 30.16 7.30 +chr9 139313587 139313587 C T het 139.99 111 31.43 5.83 +chr9 139354080 139354080 C T het 35.96 59 33.12 0.82 +chr9 139357399 139357399 G A het 642.60 132 21.34 4.87 +chr9 139362930 139362930 T C het 104.12 148 35.31 0.70 +chr9 139410424 139410424 A G hom 146.44 38 23.88 3.85 +chr9 139652269 139652269 G A unknown 85.99 48 35.34 9.55 +chr9 139658576 139658576 G C het 954.21 61 34.08 15.64 +chr9 139720353 139720353 C G het 556.01 218 25.45 2.55 +chr9 139745542 139745542 A C unknown 127.78 65 22.05 3.28 +chr9 139818465 139818465 C T het 119.61 53 25.42 2.26 +chr9 139873964 139873964 T G het 130.60 20 17.10 6.53 +chr9 139888287 139888287 A C het 202.62 52 28.03 3.90 +chr9 139945051 139945051 A G unknown 184.37 37 25.84 6.36 +chr9 139945363 139945363 G A unknown 99.59 23 15.32 9.05 +chr9 139945858 139945858 C A het 454.58 74 24.12 6.14 +chr9 139960187 139960187 A T unknown 146.23 112 26.23 2.92 +chr9 139994364 139994364 C T unknown 36.56 71 24.85 1.46 +chr9 140128081 140128081 C A unknown 31.15 68 27.75 0.84 +chr9 140196330 140196330 G T het 416.72 51 29.47 8.17 +chr9 140267360 140267360 T A het 30.04 68 31.24 0.44 +chr9 140481470 140481470 A C unknown 110.47 96 29.57 2.08 +chr9 140509249 140509249 T C unknown 33.99 93 32.99 1.31 +chr9 140669534 140669534 T G unknown 48.94 124 31.88 2.04 +chr9 140710436 140710436 C T het 662.58 128 31.74 5.18 +chr9 140943642 140943642 G T unknown 1670.79 212 39.20 10.92 +chr10 267346 267346 C T het 162.35 108 38.59 1.50 +chr10 298323 298323 C T het 264.59 299 36.20 0.88 +chr10 696804 696804 T C unknown 34.61 42 21.75 1.15 +chr10 1065777 1065777 A G unknown 71.92 97 34.79 0.96 +chr10 1229414 1229414 C T unknown 31.32 19 25.92 2.09 +chr10 3128104 3128104 A G unknown 34.02 10 20.37 5.67 +chr10 3182867 3182867 A T unknown 62.83 84 28.63 2.33 +chr10 3189668 3189668 T A het 239.87 88 29.60 2.73 +chr10 3192036 3192036 T C unknown 50.76 75 23.97 0.92 +chr10 3208440 3208440 C A het 507.58 271 27.40 1.87 +chr10 3212178 3212178 G C het 460.58 86 30.01 5.36 +chr10 4161357 4161357 G A hom 95.25 6 33.61 19.05 +chr10 4929527 4929527 C T het 1201.34 68 37.97 17.67 +chr10 5202060 5202060 C T het 122.02 125 18.70 8.13 +chr10 5249377 5249377 A T het 170.41 20 23.54 9.47 +chr10 5690228 5690228 A C hom 34.69 111 6.66 0.68 +chr10 5784543 5784543 G A het 156.42 52 24.80 4.01 +chr10 5790729 5790729 C T het 480.79 133 32.53 5.17 +chr10 5791464 5791464 C G het 31.60 264 32.43 0.21 +chr10 6005674 6005674 G A hom 1030.03 38 33.74 27.11 +chr10 6063674 6063674 T C hom 1468.57 88 38.64 16.69 +chr10 6193573 6193573 G C hom 32.01 16 12.08 8.00 +chr10 6262782 6262782 A C het 87.06 104 30.10 0.84 +chr10 6370206 6370206 A C het 635.58 177 33.05 3.59 +chr10 7776796 7776796 G C het 196.58 92 23.70 2.14 +chr10 7875832 7875832 G A het 33.80 61 16.32 0.69 +chr10 8556026 8556026 C A het 92.62 128 19.67 0.72 +chr10 11299735 11299735 A T hom 1728.58 117 34.20 14.77 +chr10 11911566 11911566 A G het 40.29 56 22.61 0.72 +chr10 12202866 12202866 A T unknown 332.99 137 34.93 9.51 +chr10 12288302 12288302 A G hom 1539.54 75 35.05 20.53 +chr10 13246385 13246385 T A unknown 56.99 167 35.94 1.63 +chr10 13370315 13370315 C T het 2575.54 93 34.34 27.69 +chr10 13494695 13494695 C T unknown 30.24 55 28.03 1.51 +chr10 13655815 13655815 G C het 263.58 109 29.86 2.42 +chr10 13782124 13782124 A G hom 992.03 41 28.85 24.20 +chr10 14013954 14013954 C A unknown 39.77 9 15.28 13.26 +chr10 14572544 14572544 T G het 110.94 77 35.53 2.36 +chr10 14885903 14885903 A T het 204.85 95 36.22 2.77 +chr10 14981874 14981874 A G het 47.72 120 11.75 0.61 +chr10 15014418 15014418 C G hom 2267.54 91 31.86 24.92 +chr10 15255113 15255113 C T het 366.58 83 25.10 4.42 +chr10 15697451 15697452 TT - het 177.55 54 17.69 3.29 +chr10 16948248 16948248 T G unknown 39.90 96 16.17 1.00 +chr10 17157579 17157579 T A het 54.63 173 35.75 0.73 +chr10 17242462 17242462 A G unknown 539.79 124 32.73 6.07 +chr10 17636412 17636412 T A het 201.62 70 27.50 3.01 +chr10 18267096 18267096 G A het 930.22 45 30.73 20.67 +chr10 18550958 18550958 T C het 77.55 191 33.89 0.91 +chr10 18823252 18823252 A G hom 337.82 49 27.25 6.89 +chr10 18826974 18826974 T C het 121.84 29 31.99 6.09 +chr10 18931512 18931512 T C het 1182.79 194 34.92 9.24 +chr10 18957647 18957647 T G het 789.79 107 36.74 10.97 +chr10 19229606 19229606 C T hom 872.73 75 22.62 11.64 +chr10 19780503 19780503 A C het 457.58 151 28.51 3.03 +chr10 21074777 21074777 C T het 71.59 116 34.49 1.21 +chr10 21097504 21097504 T C het 150.61 179 31.97 0.84 +chr10 21108377 21108377 C T unknown 2865.56 262 32.98 15.57 +chr10 21115332 21115332 T C het 255.99 121 29.15 8.53 +chr10 21148584 21148584 C A het 1429.90 72 29.63 19.86 +chr10 21806691 21806691 T G het 37.10 162 37.04 0.32 +chr10 21903708 21903708 C T het 221.76 81 30.19 2.74 +chr10 22209851 22209851 T G het 617.58 113 30.09 5.47 +chr10 22453067 22453067 G T het 136.33 19 24.80 8.52 +chr10 22606871 22606871 T A unknown 76.88 114 30.92 2.65 +chr10 23393100 23393100 T A unknown 240.57 233 35.07 2.13 +chr10 24564627 24564627 G A hom 65.27 19 20.00 7.25 +chr10 24831571 24831571 T G unknown 131.26 57 30.45 3.20 +chr10 24874466 24874466 G T hom 45.01 57 11.99 1.88 +chr10 24880502 24880502 T C unknown 122.32 77 20.58 2.04 +chr10 26562658 26562658 T C unknown 98.68 108 35.69 2.06 +chr10 26792062 26792062 A C het 68 157 38.35 0.99 +chr10 27031393 27031396 GATT - unknown 808.88 51 26.24 23.11 +chr10 27400995 27400995 T A het 66.24 179 24.93 0.55 +chr10 27455916 27455916 A G unknown 63.21 21 20.60 9.03 +chr10 27538905 27538905 G T unknown 55.32 256 12.51 0.41 +chr10 27687775 27687775 T C hom 2389.78 96 32.33 24.89 +chr10 27688189 27688189 G - hom 452.56 56 19.94 8.08 +chr10 27692099 27692099 A G het 2824.58 207 37.59 13.65 +chr10 28223906 28223906 A T unknown 48.33 71 31.67 0.83 +chr10 28911303 28911303 T C unknown 42.01 2 34.79 21.01 +chr10 29839513 29839513 A G unknown 130.79 40 36.91 4.84 +chr10 30978164 30978164 A G hom 53.01 4 26.64 17.67 +chr10 31005822 31005822 C T hom 390.98 40 19.82 9.77 +chr10 31133729 31133729 T A hom 36.88 31 24.82 1.84 +chr10 32128325 32128325 G - het 220.75 40 16.97 6.69 +chr10 32337543 32337543 C T het 181.13 104 27.36 1.95 +chr10 32399394 32399394 G A het 694.72 76 22.71 9.14 +chr10 32745396 32745396 A G hom 1506.06 69 25.98 21.83 +chr10 32860844 32860844 G - het 159.58 45 20.72 3.55 +chr10 32974969 32974969 A G hom 2945.97 97 33.12 30.37 +chr10 32978136 32978136 G A het 676.40 59 32.25 12.30 +chr10 33190567 33190567 C A het 691.57 88 22.46 7.86 +chr10 33346697 33346697 C G het 591.58 161 26.51 3.67 +chr10 33346817 33346817 C A het 91.90 40 18.44 2.30 +chr10 33486614 33486614 C A het 30.01 90 26.55 0.68 +chr10 33552696 33552696 A G hom 5903.01 182 33.20 32.43 +chr10 34625218 34625218 G C unknown 77.31 65 35.80 1.76 +chr10 34739127 34739127 A T het 37.63 36 33.42 2.51 +chr10 35484949 35484949 T G het 343.99 133 38.12 11.47 +chr10 35495800 35495800 C A het 848.67 150 21.50 5.66 +chr10 37422895 37422895 G A unknown 55.67 426 12.93 0.31 +chr10 37507885 37507885 A T het 46.24 81 18.11 0.62 +chr10 38466875 38466875 A T het 498.94 121 14.33 4.12 +chr10 42396883 42396883 A C unknown 327.74 82 10.64 4.49 +chr10 42924520 42924520 A T het 42.60 77 20.41 0.87 +chr10 43251776 43251776 A C het 208.40 206 20.91 1.97 +chr10 43292555 43292555 T A het 391.58 151 33.75 2.59 +chr10 43533277 43533277 G A hom 44.01 7 19.50 8.80 +chr10 43598106 43598106 A G unknown 47.06 32 20.13 2.94 +chr10 44538506 44538506 T G unknown 31.77 6 17.66 10.59 +chr10 45478092 45478092 A G het 102.03 71 31.12 7.29 +chr10 45479570 45479570 A C unknown 36.68 52 27.72 1.22 +chr10 45685642 45685642 A T het 52.47 123 10.07 0.49 +chr10 45935953 45935953 A T het 349.58 109 23.78 3.21 +chr10 46952839 46952839 G A het 77.28 46 10.03 1.68 +chr10 46967328 46967328 A C het 130.60 123 19.52 1.06 +chr10 47088001 47088002 CA - het 172.51 47 15.79 4.66 +chr10 47106124 47106124 G A hom 82.67 7 19.80 16.53 +chr10 47594672 47594672 A C het 36.32 17 27.88 2.59 +chr10 47595163 47595163 G A het 233.11 57 21.08 5.69 +chr10 47641951 47641951 C G het 185.38 33 17.15 5.62 +chr10 48388007 48388007 C T het 545.58 79 31.28 6.91 +chr10 49609731 49609731 T A het 153.60 106 34.08 1.45 +chr10 49944315 49944315 A T unknown 142.07 41 36.41 14.21 +chr10 50029293 50029293 T A het 393.41 78 28.13 5.04 +chr10 50227632 50227632 T C het 59.81 87 36.24 1.42 +chr10 50678432 50678432 C G unknown 94.23 364 37.13 1.00 +chr10 50723684 50723684 G A hom 346.84 128 10.51 2.71 +chr10 50863083 50863083 A C het 2515.54 89 33.31 28.26 +chr10 50870847 50870847 A T het 349.80 195 34.71 2.50 +chr10 50960209 50960209 G A het 2039.58 175 34.77 11.65 +chr10 50964900 50964900 A T het 63.19 143 33.50 0.60 +chr10 51549496 51549496 T C hom 4996.01 130 39.11 38.43 +chr10 51620499 51620499 G A hom 35.01 26 8.97 2.33 +chr10 51631508 51631508 T C het 137.61 34 23.46 4.05 +chr10 51952509 51952509 C A hom 43.77 9 20.69 8.75 +chr10 52390506 52390506 A T het 200.95 147 28.72 6.09 +chr10 52419481 52419481 G C unknown 37.06 115 11.97 0.62 +chr10 52445127 52445127 T C het 80.96 162 10.95 0.50 +chr10 53667391 53667391 T G het 329.58 128 29.04 2.57 +chr10 54050079 54050079 G A het 2838.86 127 35.41 22.35 +chr10 54149352 54149352 T C hom 102.27 8 27.47 12.78 +chr10 54528942 54528942 A T het 127.42 58 23.63 2.20 +chr10 55568479 55568479 G C unknown 53.57 200 36.31 1.45 +chr10 55583158 55583158 T A het 47.07 119 31.55 0.67 +chr10 55583225 55583225 C T het 111.25 51 32.03 2.27 +chr10 55588422 55588422 C T hom 77.10 30 22.11 2.75 +chr10 55590943 55590946 AGAC - hom 2361.52 172 35.16 23.15 +chr10 59575923 59575923 A G hom 359.02 18 29.94 19.95 +chr10 60148603 60148603 T A het 172 80 20.09 3.74 +chr10 60272973 60272973 A G hom 38.01 3 25.96 19.01 +chr10 61014264 61014264 T A het 62.88 124 30.39 0.77 +chr10 61112172 61112172 G C het 361.79 110 31.10 4.26 +chr10 61115580 61115580 G A unknown 65.80 85 25.85 1.10 +chr10 61423994 61423994 T A het 75.75 71 24.43 1.07 +chr10 61665886 61665886 C A hom 895.57 78 36.19 11.48 +chr10 61831744 61831744 A G het 1411.55 216 39.33 13.44 +chr10 62553763 62553763 A G hom 4029.01 108 36.86 37.31 +chr10 63982984 63982984 A G het 2409.79 118 32.64 20.42 +chr10 64148369 64148369 A G hom 685.63 28 26.52 24.49 +chr10 64573876 64573876 A T het 32.17 110 30.58 0.39 +chr10 64966550 64966550 C A het 374.58 150 34.95 2.50 +chr10 64973498 64973498 C G het 38.02 58 22.91 0.78 +chr10 69696103 69696103 G T het 48.28 11 23.65 6.90 +chr10 70179627 70179627 T C het 145.79 171 32.32 1.31 +chr10 70191701 70191701 A T het 579.58 212 30.27 2.73 +chr10 70225504 70225504 G T het 553.42 150 33.53 3.69 +chr10 70243264 70243264 G A unknown 44.99 246 38.12 1.96 +chr10 70515291 70515291 A T het 164.26 58 23.49 3.49 +chr10 70696791 70696791 T G het 171.61 134 14.22 1.28 +chr10 71000494 71000494 T G het 140.62 80 30.68 1.76 +chr10 71192734 71192734 G A het 90.99 185 17.24 1.82 +chr10 71243629 71243629 A T unknown 299.99 152 34.57 8.11 +chr10 71332843 71332844 TG - unknown 399.75 39 36.63 14.28 +chr10 72285707 72285707 T C het 129.16 111 32.63 1.16 +chr10 72291052 72291052 G C unknown 36.05 99 31.23 0.74 +chr10 72496559 72496559 G T het 46.57 76 31.62 0.61 +chr10 72505010 72505010 A G het 255.58 116 27.37 2.20 +chr10 72520330 72520330 A G unknown 1170.79 156 31.24 9.84 +chr10 72520673 72520673 A T het 34.52 39 32.68 0.89 +chr10 72533910 72533910 C T hom 544.01 32 26.27 17.00 +chr10 72535021 72535021 C A het 31.04 45 32.61 1.55 +chr10 72633502 72633502 C T hom 498.14 22 29.68 22.64 +chr10 72636491 72636491 G A unknown 69.61 117 36.55 1.42 +chr10 73048356 73048356 G T unknown 127.01 147 32.46 4.70 +chr10 73053223 73053223 C A het 130.70 109 31.24 1.20 +chr10 73330727 73330727 T C hom 167.60 104 19.13 1.61 +chr10 73376940 73376940 G A unknown 63.55 86 29.85 1.67 +chr10 73476048 73476048 G C het 36.31 13 29.22 4.03 +chr10 73545645 73545645 T A het 57.96 31 28.31 2.23 +chr10 73553261 73553261 C A het 120.32 176 37.74 0.89 +chr10 73559498 73559498 T A unknown 57.88 93 32.85 1.87 +chr10 73579405 73579405 C T het 479.82 90 33.44 6.57 +chr10 73581560 73581560 A T het 403.18 115 27.69 4.86 +chr10 73950297 73950297 G T hom 31.81 70 15.33 3.18 +chr10 74104957 74104957 C G unknown 42.34 17 19.16 3.53 +chr10 74268031 74268031 T C het 1124.63 114 30.16 9.87 +chr10 75393746 75393746 C A unknown 52.09 106 28.10 0.96 +chr10 75457349 75457349 G A unknown 49.83 305 7.56 0.22 +chr10 75533627 75533627 T C het 207.95 68 28.88 3.06 +chr10 75606972 75606972 A C het 343.58 153 32.76 2.25 +chr10 75673056 75673056 A G het 89.88 135 34.67 0.85 +chr10 75673731 75673731 C T het 1879.57 114 34.72 16.49 +chr10 75843100 75843100 T A hom 1357.02 87 31.66 19.96 +chr10 76736036 76736036 A C unknown 121 159 33.42 1.53 +chr10 76849020 76849020 C G hom 48.25 88 7.88 0.79 +chr10 76971007 76971007 G A unknown 35.06 60 32.67 1.21 +chr10 76971305 76971305 T A het 30.72 120 26.57 0.35 +chr10 78674767 78674767 G C het 819.58 383 33.41 2.14 +chr10 78755281 78755281 C A het 104.93 99 29.54 1.06 +chr10 78944731 78944731 C G het 563.60 95 33.12 5.93 +chr10 79492970 79492970 C T unknown 102.61 117 16.16 1.68 +chr10 79569237 79569237 C A unknown 57.83 78 34.14 1.05 +chr10 79570744 79570744 C A het 30.12 23 24.36 7.53 +chr10 79581751 79581751 T A het 157.55 205 36.77 1.77 +chr10 79616605 79616605 T C het 371.67 58 25.51 6.41 +chr10 79741387 79741387 C G het 114.55 271 35.21 0.96 +chr10 79785948 79785948 C A unknown 63.99 88 31.76 2.78 +chr10 81056224 81056224 A C unknown 31.06 212 29.36 0.31 +chr10 81065219 81065219 A T het 252.19 130 27.48 2.65 +chr10 81111376 81111376 A T unknown 48.62 45 23.38 2.03 +chr10 81850487 81850487 G T het 32.03 137 15.84 0.23 +chr10 81923054 81923054 C A het 75.78 44 20.87 1.72 +chr10 82007495 82007495 T G unknown 32.79 14 22.94 3.28 +chr10 82012583 82012583 G A het 138.27 158 17.50 0.88 +chr10 82040602 82040602 A G het 168.99 97 37.58 6.50 +chr10 82402719 82402719 C T het 214.64 129 30.55 1.66 +chr10 85982039 85982039 C G het 82.11 100 27.81 1.05 +chr10 85985331 85985331 C T unknown 140.99 71 36.45 8.81 +chr10 85993717 85993717 G A unknown 207.93 23 31.45 13.00 +chr10 87898549 87898549 C T unknown 64.98 55 24.82 1.97 +chr10 88053572 88053572 C T unknown 34.77 8 16.46 11.59 +chr10 88428453 88428453 C G unknown 32.35 58 22.86 1.04 +chr10 88441436 88441436 T G het 63.24 76 28.06 1.58 +chr10 88719834 88719834 G C het 110.67 44 30.44 2.52 +chr10 88939969 88939969 A C het 229.58 214 14.00 1.07 +chr10 90572814 90572814 A G het 109.29 65 22.80 1.68 +chr10 90575307 90575307 G T het 70.68 57 31.26 3.53 +chr10 90611287 90611287 A T het 118.84 68 25.32 1.98 +chr10 90697695 90697695 T C unknown 364.01 19 31.50 20.22 +chr10 90732840 90732840 A C unknown 33.94 82 26.48 1.13 +chr10 90762906 90762906 G C het 103.55 148 32.42 1.73 +chr10 90898793 90898793 A C het 142.92 96 27.52 1.68 +chr10 90975849 90975849 C T het 135.03 28 24.61 6.14 +chr10 91005397 91005397 G A het 264.64 97 30.65 2.73 +chr10 91152428 91152428 T A het 90.20 149 29.39 0.88 +chr10 91470660 91470660 T G unknown 347.09 36 33.77 13.88 +chr10 91479085 91479085 G T unknown 328.69 75 31.20 7.30 +chr10 91497368 91497368 A G unknown 65.15 93 29.28 1.86 +chr10 91522707 91522707 C G unknown 67.02 13 28.73 11.17 +chr10 92656130 92656130 A C unknown 42.99 135 33.87 1.72 +chr10 92662974 92662974 T G het 53.92 59 20.33 1.10 +chr10 92676127 92676127 T C het 136.01 51 40.35 8.00 +chr10 95082882 95082882 G A unknown 1835.79 271 38.93 9.61 +chr10 95123948 95123948 C T unknown 32 66 35.44 1.88 +chr10 95132905 95132905 C T het 2613.03 99 37.08 26.39 +chr10 95386648 95386648 C T het 40.24 76 25.51 0.57 +chr10 95422959 95422959 C G unknown 44.60 60 35.01 1.54 +chr10 95443688 95443688 C G het 1109.58 54 37.58 20.55 +chr10 95458231 95458231 A G unknown 136.26 39 27.10 5.68 +chr10 95459698 95459698 G C het 153.70 15 27.06 17.08 +chr10 96201615 96201615 A G het 297.90 49 34.78 9.93 +chr10 97158777 97158777 G C het 871.58 209 32.50 4.17 +chr10 97386604 97386604 G C unknown 140.40 49 17.86 3.90 +chr10 97387952 97387952 C G unknown 32.66 11 27.79 10.89 +chr10 97440108 97440108 A - unknown 99.42 112 37.54 3.43 +chr10 97919011 97919011 A G het 2108.79 321 35.32 9.25 +chr10 97959220 97959220 A T het 73.95 60 30.32 1.23 +chr10 97987189 97987189 G C unknown 31.99 158 32.45 0.76 +chr10 98064184 98064184 G C unknown 196.49 82 33.76 3.22 +chr10 98129803 98129803 C A het 55.09 68 27.27 1.62 +chr10 98146654 98146654 C G het 142.99 83 34.63 7.94 +chr10 98287261 98287261 G C het 1134.80 56 31.83 20.26 +chr10 98287792 98287792 G T het 480.99 132 39.79 13.00 +chr10 98380277 98380277 C T het 2621.54 115 33.86 22.80 +chr10 98408445 98408445 C A unknown 130.37 86 38.77 5.67 +chr10 98708679 98708679 A G unknown 39.13 56 15.52 1.06 +chr10 98715471 98715471 A C het 216.11 173 34.34 1.66 +chr10 98846928 98846928 G A hom 34.01 7 16.25 11.34 +chr10 99019177 99019177 A G hom 2431.09 174 37.39 13.97 +chr10 99118349 99118349 C T unknown 117.70 202 28.66 0.77 +chr10 99123457 99123457 A G het 243.81 57 36.00 4.98 +chr10 99139600 99139600 C G het 118.92 29 37.78 6.61 +chr10 99160046 99160046 C T het 1970.79 168 36.27 15.89 +chr10 99213486 99213486 G A het 222.61 122 28.06 1.82 +chr10 99218524 99218524 G T het 393.67 321 35.86 1.23 +chr10 99219727 99219727 C G unknown 32.06 94 35.93 1.53 +chr10 99340576 99340576 C A hom 93.13 24 22.15 7.76 +chr10 99416140 99416140 A C unknown 146.62 149 36.92 2.33 +chr10 99642520 99642520 C A het 114.79 85 29.55 1.77 +chr10 99968063 99968063 C T het 102.61 125 30.68 2.14 +chr10 99968808 99968808 G T unknown 95.18 225 36.87 0.57 +chr10 100143541 100143541 G A unknown 142.02 263 35.17 2.09 +chr10 100182080 100182080 T A unknown 52.98 86 32.42 0.80 +chr10 101163420 101163420 G A het 301.58 168 29.38 1.80 +chr10 101373626 101373626 T A het 84.70 76 33.60 1.11 +chr10 101499393 101499393 T A het 71.28 74 30.09 1.02 +chr10 101572772 101572772 C G het 70.17 166 35.04 0.90 +chr10 101591944 101591944 T C hom 2844.54 106 36.93 26.84 +chr10 101596043 101596043 A C het 304.58 148 34.55 2.06 +chr10 101606760 101606760 C T unknown 95.99 325 37.74 1.19 +chr10 101643914 101643914 T A het 88.12 129 34.36 0.90 +chr10 101715899 101715899 G A hom 6334.01 327 37.40 19.37 +chr10 101824986 101824986 T C unknown 77.29 93 27.09 3.22 +chr10 102056745 102056745 C T het 219.99 87 41.39 10.00 +chr10 102056970 102056970 A - het 3898 145 30.00 26.88 +chr10 102248950 102248950 C G het 1222.18 59 35.48 20.71 +chr10 102265847 102265847 A C het 5221.01 252 34.73 20.72 +chr10 102569089 102569089 C G hom 350.90 24 25.93 14.62 +chr10 102685584 102685584 G A unknown 51.77 12 36.66 6.47 +chr10 102716325 102716325 T A het 57.01 40 24.36 1.84 +chr10 102747363 102747363 G T hom 81 6 31.29 27.00 +chr10 102770327 102770327 A G unknown 30.77 7 15.00 7.69 +chr10 102987440 102987440 G T unknown 46.28 122 37.72 0.86 +chr10 103286054 103286054 T A het 44.21 29 34.32 2.11 +chr10 103347100 103347100 G A unknown 40.99 311 37.19 0.59 +chr10 103534527 103534527 T G unknown 32.93 78 35.67 0.91 +chr10 103588734 103588734 A G unknown 202.99 70 35.88 14.50 +chr10 103988669 103988669 T A het 46.99 217 35.02 0.87 +chr10 104127228 104127228 T G unknown 74.14 121 38.22 2.97 +chr10 104164734 104164734 G A het 78.99 61 26.91 3.76 +chr10 104231651 104231651 A G hom 1478.36 51 30.08 28.99 +chr10 104240928 104240928 A T het 50.69 133 19.56 0.52 +chr10 104378847 104378847 G C unknown 34.08 170 31.81 0.81 +chr10 105174985 105174985 T G het 126.59 55 32.20 2.30 +chr10 105657258 105657258 G C unknown 30.82 55 33.57 1.14 +chr10 105812035 105812035 C A het 642.58 149 34.12 4.31 +chr10 105830278 105830278 T C unknown 45.99 200 37.78 1.05 +chr10 108432828 108432828 C T hom 254.52 31 25.53 9.43 +chr10 111288508 111288508 T A het 300.31 55 29.01 7.32 +chr10 112540683 112540683 G T het 41.86 82 21.95 0.51 +chr10 112579786 112579786 C G het 330.58 93 24.88 3.55 +chr10 112839188 112839188 T C het 149.94 61 24.01 3.19 +chr10 113924322 113924322 G A het 231.41 104 32.30 2.23 +chr10 114918543 114918543 A T het 60.28 53 23.84 2.01 +chr10 115406851 115406851 A G het 56.11 74 33.40 1.12 +chr10 115412793 115412793 A G het 673.99 171 36.35 15.32 +chr10 115417252 115417252 T A het 402.60 60 28.41 6.71 +chr10 115529490 115529490 C T unknown 104.08 180 30.29 0.74 +chr10 115608962 115608962 T A het 93.82 195 35.10 0.75 +chr10 115609825 115609825 G A het 153.79 137 29.56 1.57 +chr10 116048643 116048643 G A het 169.13 69 26.83 3.19 +chr10 116196150 116196150 A G unknown 53.70 73 22.59 0.98 +chr10 116417757 116417757 T G het 31.63 125 28.32 0.36 +chr10 117061606 117061606 T G het 57.04 58 22.74 1.43 +chr10 117884950 117884950 G A unknown 986.79 108 34.94 12.33 +chr10 118117495 118117495 C T het 40.23 46 33.03 1.44 +chr10 118187399 118187399 T G hom 678.90 25 32.43 27.16 +chr10 118436075 118436075 C A unknown 37.99 100 35.99 1.65 +chr10 118440790 118440790 T G het 50.96 112 35.56 0.66 +chr10 118460412 118460412 T C unknown 52.56 52 17.73 1.70 +chr10 118616058 118616058 C T het 127.11 76 33.75 2.15 +chr10 119012925 119012925 T G unknown 31.35 112 27.51 0.36 +chr10 119768551 119768551 C T hom 10659.01 278 40.38 38.34 +chr10 120081948 120081948 C T hom 1257.64 77 21.05 16.33 +chr10 120354496 120354496 C G het 184.05 55 32.42 3.35 +chr10 120632048 120632048 A G unknown 173.31 165 10.77 1.56 +chr10 120692186 120692186 A C unknown 34.03 111 17.50 0.54 +chr10 120820290 120820290 G A het 39.79 181 26.96 0.57 +chr10 121212028 121212028 A C hom 31.77 8 13.76 10.59 +chr10 121436117 121436117 G T unknown 37.99 294 33.88 0.56 +chr10 121675460 121675460 A T het 122.63 108 30.30 2.27 +chr10 122618148 122618148 G C unknown 684.79 112 38.09 8.25 +chr10 122664839 122664839 C T unknown 40.99 120 37.94 1.17 +chr10 122668124 122668124 T C het 624.58 218 34.78 2.87 +chr10 122668353 122668353 - AAGA het 650.12 30 32.39 21.67 +chr10 123424292 123424292 G T het 34.26 4 30.12 11.42 +chr10 123724913 123724913 A T het 33.13 52 27.58 0.75 +chr10 123997044 123997044 C T unknown 150.80 129 33.49 1.59 +chr10 124057412 124057412 A T het 91.26 50 21.83 2.28 +chr10 124159748 124159748 A - het 287.57 38 24.58 7.57 +chr10 124166119 124166119 T A het 44.15 88 26.52 0.69 +chr10 124384106 124384106 C A het 335.58 314 17.93 1.07 +chr10 124385560 124385560 C T het 272.28 125 28.82 2.93 +chr10 124390451 124390451 G T unknown 102.39 116 31.64 1.26 +chr10 124753438 124753438 A C het 126.22 145 35.17 1.48 +chr10 125426565 125426565 G C hom 495.15 29 29.03 17.07 +chr10 125506602 125506602 C A het 140.66 242 34.46 0.81 +chr10 125526605 125526605 T G het 72.62 134 33.70 1.23 +chr10 125769721 125769721 T A het 198.30 161 31.36 1.72 +chr10 126185401 126185401 G A het 30.41 44 25.06 0.69 +chr10 126523582 126523582 T A unknown 33.56 120 34.71 0.55 +chr10 126631412 126631412 C G het 37.33 155 29.18 0.35 +chr10 126714966 126714966 A G het 643.32 40 30.30 16.08 +chr10 127388402 127388402 T C unknown 45.77 3 28.59 22.88 +chr10 127483573 127483573 G A het 926.79 154 37.27 9.09 +chr10 127529821 127529821 C G unknown 37.99 157 34.27 1.31 +chr10 127575897 127575897 G T unknown 44.77 7 18.45 14.92 +chr10 127760234 127760234 A G unknown 90.42 131 33.06 0.91 +chr10 128191368 128191368 T C unknown 2123.79 232 37.41 12.64 +chr10 128209959 128209959 G T hom 2448.99 73 32.88 33.55 +chr10 128810685 128810685 T C het 760.79 151 37.38 7.46 +chr10 128850841 128850841 T C het 2977.79 170 37.35 17.52 +chr10 129237572 129237572 G A het 2549.58 141 34.81 18.08 +chr10 129249693 129249693 G A hom 1099.57 64 29.03 17.18 +chr10 129859061 129859061 T C hom 235.73 12 27.56 19.64 +chr10 129877869 129877869 T C het 220.79 177 35.27 1.75 +chr10 129904560 129904560 C T unknown 2486.56 291 23.55 11.95 +chr10 129917560 129917560 T C hom 1561.14 67 27.72 23.30 +chr10 130315461 130315461 C G unknown 34.01 6 20.42 8.50 +chr10 131638747 131638747 A G hom 61.26 22 22.26 4.71 +chr10 133951707 133951707 G A het 998.79 122 29.85 10.63 +chr10 134623849 134623849 G A het 297.59 67 23.04 4.44 +chr10 134623994 134623994 C T het 208.42 77 30.13 2.71 +chr10 134726219 134726219 T C unknown 33.85 48 34.89 2.60 +chr10 134726621 134726621 G C het 72.39 27 24.55 3.81 +chr10 134754532 134754532 C T unknown 37.13 94 34.13 1.24 +chr10 134910536 134910536 T C unknown 75.62 110 27.15 1.15 +chr10 134997514 134997514 A G hom 463.55 82 28.92 5.65 +chr10 134999889 134999889 T A unknown 43.04 66 26.63 1.79 +chr10 135084322 135084322 A G het 119.25 28 26.82 6.28 +chr10 135086676 135086676 A G unknown 37.33 16 22.33 2.87 +chr10 135098672 135098672 G A het 981.58 66 34.32 14.87 +chr10 135116440 135116440 A G het 160.70 163 34.99 0.99 +chr10 135233731 135233731 T A het 33.74 49 25.40 1.47 +chr10 135279914 135279914 A C het 91.88 67 29.70 1.88 +chr10 135370639 135370639 C A unknown 710.99 363 39.96 8.46 +chr10 135438977 135438977 G A het 204.42 195 8.54 1.05 +chr11 243712 243712 A G hom 1128.07 39 31.09 28.92 +chr11 280398 280398 G C unknown 32.02 6 21.13 5.34 +chr11 293741 293741 G T het 50.96 125 30.45 1.08 +chr11 397732 397732 T G hom 100.41 23 16.26 7.17 +chr11 398931 398932 AG - het 437.54 68 25.72 6.43 +chr11 418408 418408 G C het 56.41 32 18.17 2.26 +chr11 479158 479158 C T het 490.58 133 35.93 3.69 +chr11 601785 601785 T C unknown 459.79 104 33.69 5.75 +chr11 612843 612843 T G het 205.99 48 20.96 4.29 +chr11 618998 618998 G A het 314.54 66 18.55 8.74 +chr11 674458 674458 G A unknown 336.99 136 32.23 10.21 +chr11 674645 674645 T C het 68.47 124 22.63 0.68 +chr11 688342 688342 G T het 55.70 53 28.77 1.05 +chr11 710558 710558 G A hom 770.57 72 20.72 10.70 +chr11 764869 764869 G T het 118.71 134 26.19 0.89 +chr11 1016928 1016928 C G het 747.58 317 12.22 2.36 +chr11 1081500 1081500 G T het 99.49 88 30.57 1.51 +chr11 1082520 1082520 A G unknown 328.80 62 28.19 6.85 +chr11 1096541 1096541 A T het 82.56 82 26.79 1.31 +chr11 1101223 1101223 T C het 96.97 96 34.28 1.01 +chr11 1103137 1103137 G T unknown 151.48 41 14.97 3.99 +chr11 1151695 1151695 C T unknown 54.87 25 33.27 4.99 +chr11 1155703 1155703 C G het 30.02 50 29.60 0.91 +chr11 1157761 1157761 T A unknown 57.63 127 30.85 0.86 +chr11 1251742 1251742 C T hom 122.32 29 23.00 5.32 +chr11 1253942 1253942 T C het 200.65 19 27.73 10.56 +chr11 1258283 1258283 G A het 142.25 59 25.88 2.41 +chr11 1271219 1271221 CCA - unknown 412.79 106 11.39 5.23 +chr11 1478133 1478133 G C het 55.02 18 26.88 3.93 +chr11 1652538 1652538 T C hom 38.56 11 24.05 7.71 +chr11 1661739 1661739 G T unknown 30.02 4 19.95 7.50 +chr11 1905292 1905292 T C het 1171.58 138 36.24 8.49 +chr11 1947756 1947756 G T het 507.58 167 25.54 3.04 +chr11 1947955 1947955 C G het 100.30 65 19.26 2.05 +chr11 1955977 1955977 C G het 45.17 38 25.08 2.66 +chr11 1959598 1959598 A C het 45.19 39 20.66 1.74 +chr11 1997159 1997159 T A het 294.79 227 24.49 1.70 +chr11 2017110 2017110 C G het 666.58 63 32.08 10.58 +chr11 2181236 2181236 A C unknown 46.36 20 26.70 6.62 +chr11 2322829 2322829 C A het 234.60 25 35.89 9.38 +chr11 2323053 2323053 C A unknown 44.43 55 28.97 1.71 +chr11 2334911 2334911 G A unknown 81.08 42 35.95 8.11 +chr11 2441646 2441646 G T unknown 158.99 64 36.43 11.36 +chr11 2443211 2443211 G C hom 91.28 10 20.74 9.13 +chr11 2683357 2683357 A G het 295.99 112 33.38 10.57 +chr11 3412603 3412603 A G unknown 71.05 79 14.79 1.82 +chr11 3716740 3716740 T A het 1692.58 253 30.49 6.69 +chr11 4232718 4232718 C T hom 399.55 90 15.58 4.81 +chr11 4496613 4496613 C A het 556.58 155 16.34 3.59 +chr11 4623447 4623447 C T het 349.58 158 33.03 2.21 +chr11 4827322 4827322 A G het 149.56 68 28.22 4.04 +chr11 4870350 4870350 C A het 108.79 154 29.76 1.00 +chr11 4964627 4964627 C A hom 1496.06 49 33.54 30.53 +chr11 4965239 4965239 G T hom 1017.59 33 33.42 30.84 +chr11 5323247 5323247 T A het 153.82 107 30.61 1.90 +chr11 5344552 5344552 C T hom 1167.57 41 28.91 28.48 +chr11 5344592 5344592 A C unknown 377.07 58 38.98 19.85 +chr11 5383798 5383798 C G het 367.53 25 23.56 14.70 +chr11 5452373 5452373 C G het 112.35 56 25.69 2.81 +chr11 5529865 5529865 G A hom 4263.01 146 31.86 29.20 +chr11 5566489 5566489 C T het 1913.58 178 38.60 10.75 +chr11 5602679 5602679 T C hom 10456.01 326 34.33 32.07 +chr11 5719714 5719714 C A het 161.65 61 25.18 2.65 +chr11 6291659 6291659 G C hom 1618.11 102 35.73 15.86 +chr11 6431861 6431861 G C het 448.58 76 27.74 5.90 +chr11 6567884 6567884 C T het 408.58 107 32.91 3.82 +chr11 6632349 6632349 C G het 102.56 106 31.11 0.97 +chr11 6637504 6637504 G A het 228.99 94 37.23 15.27 +chr11 6662255 6662255 G T het 33.57 162 30.34 0.40 +chr11 6738291 6738291 C T het 1510.79 252 30.40 8.17 +chr11 6740462 6740462 G C het 2228.79 363 37.73 8.99 +chr11 6806388 6806388 C T unknown 163.99 255 36.83 2.78 +chr11 6806505 6806505 C A het 74.80 73 22.85 1.29 +chr11 7092520 7092520 C G unknown 68.13 152 31.63 0.64 +chr11 7647266 7647266 G A unknown 70.80 41 31.55 2.72 +chr11 7655747 7655747 T G het 56.55 97 31.28 0.58 +chr11 7687669 7687669 A C unknown 1538.56 106 36.06 19.98 +chr11 7721870 7721870 G A het 4247.01 176 32.19 24.13 +chr11 8014613 8014613 A G het 81.70 90 29.52 1.63 +chr11 8016887 8016887 T G unknown 38.99 275 14.07 0.18 +chr11 8116920 8116920 C G hom 1203 39 31.30 30.85 +chr11 8122242 8122242 - G het 558.60 54 30.16 10.34 +chr11 8251921 8251921 G C hom 5796.01 190 34.53 30.51 +chr11 8641882 8641882 G A hom 749.75 30 30.20 24.99 +chr11 8643392 8643392 T A het 295.58 122 29.04 2.42 +chr11 8667949 8667949 G A het 115.87 160 35.14 1.06 +chr11 8671331 8671331 A G het 189.87 119 18.23 1.60 +chr11 8707147 8707147 T C unknown 461.99 198 36.29 9.83 +chr11 8717003 8717003 C T het 4154.01 178 37.35 23.34 +chr11 8729221 8729221 C T unknown 193.20 29 36.20 8.05 +chr11 8946959 8946959 G A het 103.28 48 23.04 2.15 +chr11 8950885 8950885 G C het 138.72 52 27.11 2.67 +chr11 8974942 8974942 G C unknown 41.28 32 34.03 2.29 +chr11 9043350 9043350 G T het 183.58 63 29.10 2.91 +chr11 9332940 9332940 A G hom 350.83 95 13.45 4.68 +chr11 9534103 9534103 G A unknown 1190.79 172 34.14 9.68 +chr11 9608376 9608376 A C het 132.86 109 34.71 1.73 +chr11 9746299 9746299 A C het 60.19 168 33.36 1.37 +chr11 9769562 9769562 C G hom 2942.54 131 33.60 22.46 +chr11 10622618 10622618 G C het 304.63 173 28.14 1.76 +chr11 10655421 10655421 G T het 43.47 67 29.92 1.67 +chr11 10772933 10772933 G A het 57.16 29 23.59 1.97 +chr11 10941918 10941918 A C unknown 48.01 15 14.49 4.36 +chr11 12183881 12183881 G T het 259.01 138 32.17 1.88 +chr11 12248515 12248515 T G het 585.79 64 35.19 12.73 +chr11 12264140 12264140 A C het 1299.58 88 32.64 14.77 +chr11 12316168 12316168 T C het 216.98 234 33.20 0.93 +chr11 12495454 12495454 T C het 37.42 182 29.03 0.37 +chr11 12539401 12539401 A C unknown 81.28 42 35.66 2.80 +chr11 12951623 12951623 A C unknown 322.03 64 36.76 20.13 +chr11 13376747 13376747 T A het 383.58 105 27.42 3.65 +chr11 14282164 14282164 C G unknown 57.99 273 36.97 0.98 +chr11 14520437 14520437 T G unknown 71.49 48 24.79 2.31 +chr11 14520495 14520495 C G het 141.83 49 30.83 4.73 +chr11 14540942 14540942 C T het 552.79 109 29.72 8.25 +chr11 16205595 16205595 C T het 113.02 26 33.50 7.06 +chr11 17408685 17408685 A T het 119.24 125 33.53 1.26 +chr11 17415198 17415198 T G het 31.89 97 22.98 0.47 +chr11 17449510 17449510 C A het 47.43 47 32.33 1.36 +chr11 17537720 17537720 G A het 392.79 82 35.12 6.66 +chr11 17544500 17544500 T C unknown 31.80 25 25.89 2.89 +chr11 17553112 17553112 T G het 37.92 71 35.29 0.82 +chr11 17581095 17581095 G T het 771.58 157 32.10 4.91 +chr11 17591961 17591961 C T het 709.58 77 29.66 9.22 +chr11 17598124 17598124 C T unknown 186.14 87 34.88 2.74 +chr11 17618679 17618679 T A het 40.33 32 34.70 2.02 +chr11 17632651 17632651 C T het 254.33 33 21.09 9.08 +chr11 17667267 17667267 G T het 65.99 84 31.95 3.30 +chr11 17793276 17793276 A G het 57.33 99 24.64 0.58 +chr11 17799470 17799470 C G unknown 62.06 82 31.81 1.51 +chr11 18048063 18048063 A T unknown 49.99 156 36.49 2.27 +chr11 18175030 18175030 C T het 555.03 41 36.02 17.90 +chr11 18290737 18290737 T G unknown 60.98 16 14.38 10.16 +chr11 18317458 18317458 T A unknown 305 74 35.90 14.52 +chr11 18460287 18460287 T C hom 63.22 9 19.49 9.03 +chr11 18600278 18600278 G A unknown 30.79 94 35.21 0.83 +chr11 18732119 18732119 T G hom 3598.01 105 34.45 34.27 +chr11 18737065 18737065 A T het 521.58 131 26.70 3.98 +chr11 18793399 18793399 G A unknown 702.33 52 31.72 16.33 +chr11 18909033 18909033 C T het 63.01 99 15.44 1.54 +chr11 18932956 18932956 C T het 116.85 212 11.48 0.73 +chr11 19171021 19171021 C T hom 472.53 18 28.99 26.25 +chr11 19246590 19246590 C T hom 818.23 30 32.97 27.27 +chr11 20117232 20117232 T C hom 3748.01 214 35.95 23.28 +chr11 20129055 20129055 T A het 1102.58 130 30.63 8.48 +chr11 20129311 20129311 G A het 1799.79 328 36.01 7.47 +chr11 20408136 20408136 G C hom 72.22 3 31.35 24.07 +chr11 20419028 20419028 T C hom 931.57 83 28.58 11.22 +chr11 20596676 20596676 T C unknown 82.26 60 14.81 2.06 +chr11 20629164 20629164 G A unknown 879.79 193 33.84 6.47 +chr11 20981894 20981894 T C het 529.59 40 28.88 13.58 +chr11 21305564 21305564 G C hom 78.50 18 24.92 8.72 +chr11 21581665 21581665 C T het 1349.57 89 37.89 15.16 +chr11 27400404 27400404 T A unknown 175.83 84 34.27 2.98 +chr11 27402333 27402333 G A het 42.77 79 30.67 0.76 +chr11 30942432 30942432 C T unknown 74.73 110 33.71 0.97 +chr11 31128375 31128375 T C unknown 63.55 282 36.65 0.37 +chr11 31648724 31648724 G T het 113.78 81 30.98 1.40 +chr11 31815047 31815047 T C unknown 98.57 192 36.76 0.99 +chr11 31815405 31815405 C G het 36.74 37 21.46 1.27 +chr11 32954639 32954639 A T het 216.04 119 30.39 2.46 +chr11 32955860 32955860 T A het 135.68 115 30.23 2.12 +chr11 32990763 32990763 A T het 179.58 62 25.64 2.90 +chr11 33080552 33080552 T A het 225.83 128 34.23 1.76 +chr11 33605170 33605170 T C unknown 44.61 24 24.40 2.97 +chr11 33667729 33667729 C G het 30.93 18 30.63 2.06 +chr11 33689712 33689712 C T unknown 342.79 117 32.69 4.18 +chr11 33780116 33780116 C G het 58.84 183 32.79 0.67 +chr11 34097770 34097770 T A het 186.11 53 19.93 3.96 +chr11 34104663 34104663 T A het 41.03 40 25.56 1.03 +chr11 34189389 34189389 A T het 73.02 55 35.18 1.33 +chr11 34673053 34673053 A - het 160.95 97 35.99 5.19 +chr11 34909820 34909820 G A het 104.26 50 20.37 2.37 +chr11 34929860 34929860 A G unknown 983.79 163 35.47 9.11 +chr11 35218311 35218311 C A het 67.83 92 30.35 1.21 +chr11 35240846 35240846 G C het 84.89 97 29.73 1.04 +chr11 35308369 35308369 T C het 1029.55 258 40.48 9.03 +chr11 35323069 35323069 A G unknown 154.51 95 31.84 2.41 +chr11 35334032 35334032 T C het 447.55 97 38.57 8.44 +chr11 35496084 35496084 A T het 100.57 164 33.34 1.26 +chr11 35988734 35988734 G C het 124.70 40 21.44 3.12 +chr11 36250791 36250791 C A het 121.40 117 25.69 1.41 +chr11 36296096 36296096 C T het 301.34 53 20.18 5.69 +chr11 36597734 36597734 A G unknown 356.99 163 36.52 8.92 +chr11 43342420 43342420 A T het 44.65 59 25.10 1.21 +chr11 43427268 43427268 G A het 947.79 144 35.15 9.48 +chr11 43427495 43427495 A C het 491.58 111 36.32 4.43 +chr11 43876698 43876698 C T unknown 696.79 156 31.07 6.51 +chr11 43905640 43905640 T C het 231.81 212 37.05 1.49 +chr11 43911326 43911326 G C het 35.07 112 32.17 1.06 +chr11 43940566 43940566 T C hom 5358.01 153 34.97 35.02 +chr11 44080210 44080210 T C hom 2367.99 114 28.82 20.77 +chr11 44096016 44096016 G C het 243.57 63 29.09 7.61 +chr11 44135994 44135994 C T het 239.84 39 32.85 8.27 +chr11 44561629 44561629 A T hom 268.81 35 28.38 9.27 +chr11 45949953 45949953 T C het 622.58 159 28.69 3.92 +chr11 46299798 46299798 C G het 50.99 35 25.74 1.46 +chr11 46406961 46406961 T C unknown 30.57 180 27.47 0.22 +chr11 46534462 46534462 T A het 154.61 47 32.11 3.29 +chr11 46685693 46685693 T A unknown 134.80 180 28.44 0.98 +chr11 46686558 46686558 T G het 460.58 139 29.78 3.31 +chr11 46724769 46724769 G C het 104.90 38 28.07 2.76 +chr11 46726072 46726072 A C het 141.86 129 35.85 1.54 +chr11 46727025 46727025 C T het 66.72 56 30.17 1.96 +chr11 46890355 46890355 C T unknown 30.98 30 28.40 1.55 +chr11 46900807 46900807 G T het 81.80 140 31.45 0.82 +chr11 46916693 46916693 C T unknown 411.99 139 35.01 12.48 +chr11 47187762 47187762 G C het 170.59 146 29.30 1.17 +chr11 47187894 47187894 G T het 64.56 180 28.35 0.83 +chr11 47295447 47295447 A G het 97.97 87 31.88 1.38 +chr11 47306338 47306338 T A het 39.98 70 35.54 1.38 +chr11 47345853 47345853 A C het 84.09 68 35.56 1.79 +chr11 47371485 47371485 G - het 186.30 25 18.95 7.45 +chr11 47436347 47436347 T C unknown 42.08 141 34.55 1.28 +chr11 47605799 47605799 A C het 312.58 112 36.59 2.79 +chr11 47647232 47647232 T G unknown 70.46 260 29.18 0.45 +chr11 47741429 47741430 GG - het 417.54 62 25.18 6.73 +chr11 48184980 48184983 CTGG - het 998.22 37 23.89 26.98 +chr11 48249574 48249574 G T hom 259.10 40 18.41 6.48 +chr11 48285970 48285970 C G het 54.10 62 29.46 0.87 +chr11 48286234 48286234 A G unknown 761.79 91 33.32 11.72 +chr11 48346999 48346999 T G het 194.26 236 36.55 1.07 +chr11 48373900 48373900 A G het 454.58 179 34.68 2.54 +chr11 49071434 49071434 A G het 41.84 110 10.89 0.69 +chr11 49090590 49090590 T G het 336.43 122 11.60 3.96 +chr11 49142102 49142102 T A hom 57.92 119 15.50 1.07 +chr11 49208169 49208169 G A unknown 33.62 123 11.96 0.43 +chr11 49846335 49846338 AGCC - hom 556.81 30 16.90 18.56 +chr11 49854624 49854624 A C het 193.85 189 19.19 1.03 +chr11 50003532 50003532 G T het 291.58 311 14.60 0.94 +chr11 50252641 50252641 A C unknown 35 257 11.45 0.18 +chr11 51435852 51435852 G T hom 872.10 67 22.02 13.02 +chr11 51516000 51516000 C T unknown 162.88 158 8.70 1.47 +chr11 55212799 55212799 A T unknown 104.25 10 29.93 10.43 +chr11 55482421 55482421 G T het 47.89 155 21.52 1.11 +chr11 55656814 55656814 C T het 271.50 62 14.76 4.38 +chr11 55782600 55782600 T G hom 247.14 90 17.21 11.77 +chr11 55783109 55783109 T C het 65.29 140 10.93 0.65 +chr11 55798830 55798830 T A unknown 79.55 157 35.55 1.10 +chr11 55889913 55889913 A T het 45.02 171 15.17 0.34 +chr11 55944080 55944080 A C het 60.39 79 28.23 0.85 +chr11 55999819 55999819 T A het 62.67 171 17.16 0.94 +chr11 56020550 56020550 C G het 915.60 158 27.01 5.79 +chr11 56128575 56128575 A T het 80.03 173 13.86 0.82 +chr11 56757021 56757021 G A unknown 203.01 294 20.57 2.51 +chr11 56954936 56954936 T A het 151.85 90 30.28 2.14 +chr11 57068055 57068055 T A het 73.07 91 34.75 1.52 +chr11 57081475 57081475 C A unknown 104.76 11 19.26 13.10 +chr11 57097701 57097701 T C het 72.16 98 26.75 2.67 +chr11 57235487 57235487 T G het 37.32 85 28.56 0.67 +chr11 57236189 57236189 G A unknown 64.99 76 32.14 3.82 +chr11 57309129 57309129 G T het 37.42 70 27.76 1.07 +chr11 57367324 57367324 A G het 129.37 159 30.82 0.81 +chr11 57374081 57374081 C G het 289.59 127 31.12 2.28 +chr11 57460224 57460224 C T unknown 501.59 75 34.71 9.29 +chr11 57876468 57876468 G T unknown 68.75 179 32.86 1.56 +chr11 57971244 57971244 A G unknown 36.99 183 23.43 0.92 +chr11 57971470 57971470 T C het 110.80 224 17.15 0.62 +chr11 57982625 57982625 G A unknown 39.59 171 23.15 0.55 +chr11 58010309 58010309 A G het 114.66 41 16.83 2.80 +chr11 58059421 58059421 A G unknown 407.59 48 25.56 11.99 +chr11 58085774 58085774 A G unknown 38.01 7 17.38 5.43 +chr11 58125656 58125656 T G het 125.55 184 32.18 1.82 +chr11 58170738 58170738 A G het 688.99 265 34.64 8.72 +chr11 58190136 58190136 A G unknown 362.99 118 31.58 11.34 +chr11 58317703 58317703 T A het 130.51 77 28.09 1.69 +chr11 58386268 58386268 T C het 115.86 131 32.88 1.22 +chr11 58478090 58478090 G A unknown 136.55 172 28.69 1.82 +chr11 59159702 59159702 T C het 247.69 83 19.51 2.98 +chr11 59224720 59224720 A G hom 6470.01 172 36.90 37.62 +chr11 59415453 59415453 T G het 173.40 92 21.64 2.04 +chr11 59611362 59611362 G A unknown 878.79 119 36.75 11.27 +chr11 60075733 60075733 T G het 936.79 65 33.01 19.12 +chr11 60230722 60230722 G T het 96.15 40 35.99 7.40 +chr11 60615329 60615329 G T het 56.05 111 19.05 0.72 +chr11 60666656 60666656 T C unknown 32.58 95 31.04 0.84 +chr11 60694761 60694761 G - unknown 111.81 81 21.24 1.72 +chr11 60701137 60701137 C G hom 47.65 15 22.28 5.96 +chr11 60794403 60794403 C G hom 32.02 8 14.60 5.34 +chr11 61017527 61017527 G C unknown 36.26 48 15.53 1.34 +chr11 61089882 61089882 G A het 267.95 115 34.56 2.33 +chr11 61117882 61117882 C G unknown 170.95 50 29.51 4.50 +chr11 61295619 61295619 A G hom 182.92 66 25.40 3.39 +chr11 61404801 61404801 A T het 68.66 96 15.70 0.72 +chr11 61487757 61487757 T C hom 369.74 46 18.04 8.04 +chr11 61546433 61546433 C A unknown 44.14 62 26.43 1.42 +chr11 61596022 61596022 C A het 41.79 52 30.72 1.49 +chr11 61624885 61624885 G C hom 2230.98 87 28.72 25.64 +chr11 61665655 61665655 G A het 303.58 91 28.55 3.34 +chr11 61675461 61675461 G C het 37.67 68 24.18 0.55 +chr11 61680870 61680870 T C unknown 45.01 3 29.04 15.00 +chr11 61724502 61724502 G A het 143.83 92 25.53 1.56 +chr11 61731534 61731534 G T het 371.73 41 21.83 9.07 +chr11 61912875 61912875 C T het 246.09 29 23.09 8.49 +chr11 61917721 61917721 C T het 44.94 72 28.80 0.85 +chr11 62289775 62289775 C G het 55.85 276 19.19 0.27 +chr11 62292850 62292850 A G het 141.80 228 19.34 0.62 +chr11 62327676 62327676 A T het 148.65 203 33.45 0.73 +chr11 62348902 62348902 A G het 33.47 71 32.30 0.73 +chr11 62396428 62396428 G T unknown 44.55 261 34.74 0.33 +chr11 62397971 62397971 C T unknown 49.80 139 33.80 0.62 +chr11 62520366 62520366 C T het 54.01 148 33.12 0.64 +chr11 62606689 62606689 C A het 34.65 88 34.72 0.85 +chr11 62678421 62678421 T G het 61.65 158 34.67 0.76 +chr11 62747145 62747145 A G hom 1768.98 62 29.61 28.53 +chr11 62768113 62768113 C G het 141.67 30 31.51 4.72 +chr11 62782234 62782234 G T unknown 145.70 194 24.08 1.03 +chr11 62886800 62886800 G C het 258.99 153 37.17 6.82 +chr11 63104008 63104008 A G het 717.59 38 31.02 18.88 +chr11 63149607 63149607 T G unknown 40.75 291 30.84 0.36 +chr11 63277927 63277927 C G het 98.79 90 32.97 1.83 +chr11 63320504 63320504 C - het 196.98 81 20.12 2.43 +chr11 63671560 63671560 C A het 35.10 39 26.02 1.25 +chr11 63676298 63676298 G A unknown 117.11 14 22.37 11.71 +chr11 63720119 63720119 G C het 269.72 55 29.43 4.90 +chr11 63974835 63974835 C G het 110.96 93 26.64 1.52 +chr11 63990469 63990469 T G het 99.77 68 31.19 3.56 +chr11 64010835 64010835 C A het 131.85 88 31.69 1.50 +chr11 64033600 64033600 T A unknown 33.99 107 34.05 1.48 +chr11 64053977 64053977 T A het 277.64 89 34.31 3.12 +chr11 64064938 64064938 G - het 437.81 88 18.81 4.98 +chr11 64067765 64067765 T A unknown 44.16 25 23.07 2.76 +chr11 64071272 64071272 G C het 499.55 103 34.34 10.41 +chr11 64088277 64088277 G T unknown 40.63 245 29.09 0.31 +chr11 64120435 64120435 T C hom 85.67 15 15.93 7.14 +chr11 64121011 64121011 T A het 60.68 25 22.68 4.33 +chr11 64121366 64121366 C G het 79.18 74 24.74 1.55 +chr11 64126839 64126839 T G unknown 42.94 22 24.78 5.37 +chr11 64427655 64427655 T A hom 36.23 13 11.70 7.25 +chr11 64428712 64428712 C A het 70.07 46 29.07 1.52 +chr11 64571753 64571753 G A het 255.62 84 23.25 3.04 +chr11 64604056 64604056 C T het 158.88 39 16.38 4.81 +chr11 64757185 64757185 C T het 348.58 51 31.02 6.83 +chr11 64855986 64855986 A G het 829.58 85 37.93 9.76 +chr11 64864342 64864342 C A het 45.69 26 27.99 3.26 +chr11 64874967 64874967 T C unknown 43.31 33 25.61 6.19 +chr11 64882789 64882789 C T het 2367.58 205 36.78 11.55 +chr11 64902002 64902002 C A het 106.31 6 33.43 17.72 +chr11 64942834 64942834 G C unknown 35.79 164 8.69 0.43 +chr11 64951080 64951080 G A unknown 38.38 53 23.53 2.40 +chr11 64974057 64974057 G C het 49.49 114 27.78 0.54 +chr11 65046381 65046381 A G het 38.29 106 21.98 0.45 +chr11 65113832 65113832 T C het 31.47 99 33.97 0.59 +chr11 65146753 65146753 C A het 57.72 31 21.30 1.86 +chr11 65300120 65300120 G A het 286.60 51 30.50 5.62 +chr11 65320865 65320865 T A unknown 45.09 31 32.48 2.37 +chr11 65547333 65547333 G A het 105.58 58 25.04 2.25 +chr11 65630465 65630465 G T het 40.52 41 18.69 1.31 +chr11 65684855 65684855 A G hom 2434.01 111 25.98 21.93 +chr11 65714350 65714350 G C het 78.98 51 26.93 2.03 +chr11 65733289 65733289 G A het 1837.79 168 36.62 14.94 +chr11 65733393 65733393 C T het 1128.03 95 32.02 11.87 +chr11 65820374 65820374 T C het 477.58 69 26.12 6.92 +chr11 65835499 65835499 A G unknown 79.03 180 31.90 1.76 +chr11 65977910 65977910 C T unknown 61.64 103 32.19 0.75 +chr11 65988028 65988028 A G het 64.93 63 27.42 1.41 +chr11 66010333 66010333 T A het 51.28 48 24.50 2.23 +chr11 66030465 66030465 C G unknown 85.76 67 31.82 1.65 +chr11 66052917 66052917 C G het 51.75 96 28.03 0.74 +chr11 66082474 66082474 A G het 32.91 34 19.58 0.97 +chr11 66193525 66193525 A C het 314.40 66 24.35 4.76 +chr11 66287237 66287237 C T unknown 85.90 71 28.29 1.65 +chr11 66329108 66329108 G C unknown 78.36 46 34.39 2.90 +chr11 66392880 66392880 C T unknown 771.79 99 29.56 10.57 +chr11 66455758 66455758 T C unknown 56.82 46 23.69 2.58 +chr11 66529279 66529279 T G het 47.45 112 24.03 0.55 +chr11 66610366 66610366 C G hom 61.23 31 24.65 2.55 +chr11 66611885 66611885 T A unknown 63.22 104 34.06 0.80 +chr11 66617021 66617021 A G het 51.05 26 21.71 2.22 +chr11 66617413 66617413 A G het 39.48 92 29.28 0.56 +chr11 66637974 66637974 T C het 34.95 41 31.02 1.03 +chr11 67022600 67022600 C A het 134.54 73 20.34 1.84 +chr11 67044831 67044831 A G unknown 64.36 46 30.83 1.84 +chr11 67051205 67051205 T A het 303.58 98 29.03 3.10 +chr11 67058894 67058894 T A unknown 99.50 47 21.95 2.76 +chr11 67059664 67059664 C G het 56.70 75 28.88 0.76 +chr11 67076810 67076810 T G het 273.20 46 21.23 5.94 +chr11 67133047 67133047 C G het 82.32 95 25.53 1.14 +chr11 67166366 67166366 A C unknown 240.84 132 29.63 2.27 +chr11 67200868 67200868 C G het 36.97 105 30.69 0.44 +chr11 67201415 67201415 A G het 184.80 44 29.29 4.20 +chr11 67205978 67205978 G A hom 524.01 39 23.35 13.44 +chr11 67209930 67209930 C A het 62.81 66 28.12 1.23 +chr11 67238986 67238986 A C hom 46.29 11 30.10 5.79 +chr11 67254397 67254397 T G het 84.62 57 27.63 1.48 +chr11 67267867 67267867 G C het 58.28 89 24.28 0.65 +chr11 67490436 67490436 A G hom 472.47 246 10.97 2.53 +chr11 67490825 67490825 A G hom 50.59 49 8.55 1.33 +chr11 67804073 67804073 C T unknown 40.36 45 29.65 3.10 +chr11 68177708 68177708 G A unknown 92.27 11 30.98 11.53 +chr11 68478511 68478511 T A het 218.05 67 33.38 4.36 +chr11 68489173 68489173 C T unknown 47.77 5 23.03 15.92 +chr11 68571490 68571490 G A het 120.24 106 28.81 1.62 +chr11 68821585 68821585 T G unknown 91.20 43 32.49 3.65 +chr11 68846098 68846098 A G hom 3148.62 106 31.72 29.70 +chr11 68852636 68852636 C A unknown 34.68 52 17.66 1.12 +chr11 69514089 69514089 C A het 294.58 119 29.23 2.48 +chr11 69950247 69950247 A T het 73.02 84 20.12 0.87 +chr11 69957917 69957917 A G unknown 897.79 155 28.65 8.02 +chr11 70194495 70194495 G T unknown 47.99 208 34.32 0.89 +chr11 70279766 70279766 C T unknown 501.99 213 42.62 10.46 +chr11 70281007 70281007 T C het 122 43 39.57 10.17 +chr11 70333610 70333610 C A het 64.88 53 28.88 1.22 +chr11 71146757 71146757 C G unknown 54.21 54 25.18 2.01 +chr11 71150217 71150217 C T hom 324.82 12 36.08 27.07 +chr11 71164471 71164471 G A het 155.50 20 22.37 7.78 +chr11 71169547 71169547 G C hom 5590.01 222 36.21 25.18 +chr11 71175155 71175155 A C unknown 33.23 38 35.49 2.56 +chr11 71192602 71192602 T C hom 37.01 5 19.49 12.34 +chr11 71299455 71299455 T C hom 39.23 28 10.97 3.27 +chr11 71373509 71373509 T A unknown 57.93 177 7.37 1.16 +chr11 71614553 71614553 T C het 194.67 116 11.65 2.12 +chr11 71650368 71650368 T C hom 360.72 24 24.24 15.03 +chr11 71712726 71712726 A C het 74.47 52 30.64 1.43 +chr11 71729892 71729892 T G unknown 111.87 155 32.08 0.92 +chr11 71735276 71735276 C - unknown 203.76 92 26.76 2.83 +chr11 71800208 71800208 C G het 31 140 33.18 0.94 +chr11 71808903 71808903 T G het 253.62 308 33.77 0.82 +chr11 71850755 71850755 C A het 207.28 170 15.94 1.22 +chr11 71944495 71944495 A T het 84.19 89 25.43 1.32 +chr11 72290237 72290237 G C het 143.99 92 28.56 2.00 +chr11 72292353 72292353 - A hom 174.63 32 15.90 5.46 +chr11 72300205 72300205 A T het 89.81 56 28.20 1.60 +chr11 72398721 72398721 G A unknown 47.10 215 32.50 1.07 +chr11 72399451 72399451 A G unknown 122.99 63 38.57 12.30 +chr11 72404480 72404480 T G unknown 37.66 63 30.05 1.02 +chr11 72535248 72535248 A T het 81.03 63 30.82 1.29 +chr11 73008403 73008403 A G het 55.58 90 24.45 1.32 +chr11 73020825 73020825 T C unknown 38.56 79 30.30 1.54 +chr11 73021901 73021901 C A het 105.60 80 34.45 1.32 +chr11 73022503 73022503 T A het 68.61 89 26.16 1.49 +chr11 73689084 73689084 C T unknown 31.93 99 31.81 0.78 +chr11 73715666 73715666 G A het 750.79 78 32.74 13.41 +chr11 73833957 73833957 C A het 345.35 50 30.72 6.91 +chr11 73914872 73914872 C G het 353.93 96 27.09 4.32 +chr11 74168411 74168411 A G unknown 1291.79 120 35.44 15.20 +chr11 74555056 74555056 C T unknown 617.79 149 34.35 5.57 +chr11 74563077 74563077 G A unknown 2928.79 373 38.26 10.93 +chr11 74914150 74914150 C G het 45.33 16 26.18 5.04 +chr11 74914293 74914293 G T het 87.97 28 24.11 3.82 +chr11 75298222 75298222 A T unknown 36 164 28.06 1.09 +chr11 75299137 75299137 A G het 525.58 260 32.52 2.02 +chr11 75898146 75898146 C G het 65.65 98 28.07 1.46 +chr11 76063275 76063275 C G hom 264.39 53 15.59 4.99 +chr11 76831697 76831697 G A unknown 35.67 23 22.49 5.10 +chr11 76871968 76871968 T G het 33.44 15 18.67 4.18 +chr11 76893280 76893280 - G hom 1621.95 52 28.11 31.19 +chr11 77775466 77775466 C G unknown 433.72 36 27.68 14.96 +chr11 77832076 77832076 T A hom 3534.01 115 35.73 30.73 +chr11 78152132 78152132 C G het 132.79 189 33.77 0.95 +chr11 78380126 78380126 C A het 67.57 117 33.18 1.04 +chr11 78380591 78380591 C A unknown 66.56 252 38.08 0.52 +chr11 78437168 78437168 C G het 1394.58 363 32.27 3.84 +chr11 78443586 78443586 G A het 2419.86 105 33.55 23.05 +chr11 78600929 78600929 T G het 94.76 109 30.35 0.87 +chr11 78780789 78780789 C A unknown 33.08 25 23.55 2.76 +chr11 82444634 82444634 C G het 286.61 33 23.87 8.69 +chr11 82533628 82533628 T C het 803.10 59 21.64 13.61 +chr11 82920771 82920771 T G het 162.12 55 18.23 2.95 +chr11 82952108 82952108 T C unknown 251.62 14 33.54 27.96 +chr11 83810113 83810113 T G hom 2879.98 85 33.65 33.88 +chr11 85396120 85396120 T A het 105.28 118 31.20 1.18 +chr11 85411730 85411730 C G het 75.96 62 32.69 1.46 +chr11 85425472 85425472 G C unknown 89.89 106 29.84 1.34 +chr11 85456780 85456780 C G het 72.55 166 30.18 0.99 +chr11 85576113 85576113 - T unknown 944.95 239 36.74 13.69 +chr11 85733476 85733476 C A unknown 59.99 130 36.39 5.45 +chr11 86208897 86208897 A G hom 2176.98 67 36.01 32.49 +chr11 86868278 86868278 A T hom 1402.78 91 37.29 22.27 +chr11 86868347 86868347 C T hom 1963.57 147 28.51 13.36 +chr11 88059466 88059466 T C het 160.72 84 18.34 1.91 +chr11 89018044 89018044 A G het 33.69 169 11.43 0.20 +chr11 89392961 89392961 T G hom 79.07 46 12.49 2.26 +chr11 89706780 89706780 A G unknown 58.36 18 17.34 4.17 +chr11 89714703 89714703 A G hom 159.85 17 20.46 11.42 +chr11 89867920 89867920 A G het 211.72 81 33.50 2.61 +chr11 91683122 91683122 T A unknown 100.95 82 37.68 2.35 +chr11 92087240 92087240 A C unknown 39.99 258 35.06 0.53 +chr11 92532458 92532458 T G het 456.12 367 42.41 1.24 +chr11 92534114 92534114 T G het 166.92 199 32.59 1.12 +chr11 93490682 93490682 T A hom 4198.01 189 28.04 22.21 +chr11 93526947 93526947 G T het 31.70 116 30.14 0.38 +chr11 93554189 93554189 A C het 32.75 44 40.07 1.31 +chr11 93922134 93922134 A T hom 186.56 65 19.95 5.83 +chr11 94038828 94038828 T G unknown 135.79 159 28.44 1.66 +chr11 94113288 94113288 C G het 507.79 87 30.40 8.61 +chr11 94225883 94225883 G T het 63.88 44 19.90 1.68 +chr11 94349612 94349612 G T unknown 60.68 51 26.09 1.73 +chr11 94906396 94906396 T C het 70.60 59 25.71 1.31 +chr11 95512371 95512371 T G het 52.60 227 35.57 0.35 +chr11 95532650 95532650 A T het 65.95 70 29.10 1.22 +chr11 96092376 96092376 C T het 475.84 29 34.71 16.41 +chr11 100814409 100814409 G A het 1805.55 83 29.36 21.75 +chr11 100830579 100830579 G A het 3025.54 113 35.49 26.77 +chr11 101375615 101375615 C G het 1168.58 59 38.54 19.81 +chr11 101786022 101786022 G C het 116.75 53 21.59 2.20 +chr11 102206988 102206988 G A unknown 162.21 56 19.18 3.12 +chr11 102391446 102391446 G T unknown 52.08 87 38.17 5.79 +chr11 102563739 102563739 C T unknown 2246.56 232 38.15 14.49 +chr11 102567626 102567626 C G unknown 625.75 42 35.78 18.40 +chr11 102572620 102572620 G A hom 78.01 12 31.90 13.00 +chr11 102962483 102962483 G A het 42.43 96 22.13 0.77 +chr11 103060309 103060309 A G het 286.30 20 35.45 17.89 +chr11 103086401 103086401 G A het 70.56 59 27.56 3.21 +chr11 103091325 103091325 G A het 437.17 147 25.67 2.97 +chr11 103091538 103091538 A T het 131.93 49 21.33 2.69 +chr11 103107149 103107149 A G het 175.63 183 31.55 0.96 +chr11 103907888 103907888 G C het 43.81 100 27.97 0.58 +chr11 103908328 103908328 G A unknown 113.95 417 33.16 0.54 +chr11 104869708 104869708 G C unknown 109.99 206 22.66 2.12 +chr11 106181562 106181562 T A het 51.23 65 28.85 0.97 +chr11 107200634 107200634 G T unknown 45.08 218 33.11 0.50 +chr11 107253627 107253627 G A unknown 38.01 6 18.57 9.50 +chr11 107326336 107326336 A C het 79.65 129 34.61 0.94 +chr11 107462878 107462878 A C unknown 146.43 22 30.47 8.61 +chr11 107965145 107965145 A T het 256.65 109 36.99 2.35 +chr11 108014799 108014799 C T hom 1528.56 109 39.59 20.11 +chr11 108044091 108044091 T A unknown 650.79 130 34.87 7.57 +chr11 108044421 108044421 T C unknown 31.99 204 34.03 2.46 +chr11 108128327 108128327 T G het 155.83 84 17.67 1.86 +chr11 108693244 108693244 A G hom 818.26 58 23.01 14.11 +chr11 108709412 108709412 A G het 457.85 109 30.50 6.54 +chr11 108712050 108712050 G A unknown 35.01 106 27.82 0.95 +chr11 108722851 108722851 C G hom 2024.56 94 30.78 21.54 +chr11 110034052 110034052 T C unknown 67.99 194 34.21 2.72 +chr11 111167131 111167131 C A het 30.02 69 27.42 0.61 +chr11 111338328 111338328 A G hom 779.81 77 33.42 19.02 +chr11 111590656 111590656 C G het 91.30 107 32.75 1.14 +chr11 111749336 111749336 A G het 147.57 139 32.92 2.64 +chr11 111784245 111784245 G C unknown 53.68 126 19.84 0.54 +chr11 111953643 111953643 A T het 67.55 156 37.75 1.06 +chr11 112070660 112070660 A G het 185.30 73 36.47 3.63 +chr11 112088499 112088499 A C hom 3049.98 110 31.55 27.73 +chr11 113113561 113113561 A T het 149.83 252 35.82 1.39 +chr11 113195349 113195349 G C unknown 35.82 126 34.48 0.75 +chr11 113212553 113212553 T C unknown 669.99 171 40.74 14.89 +chr11 113264470 113264470 A C unknown 365.99 186 34.47 7.79 +chr11 113860334 113860334 T C unknown 99.99 216 35.35 1.85 +chr11 114057737 114057737 A T unknown 32.67 163 35.14 0.38 +chr11 114092153 114092153 C A unknown 41.25 5 31.20 13.75 +chr11 114097687 114097687 G A unknown 52.01 7 22.97 13.00 +chr11 114324444 114324444 G A hom 192.52 30 28.98 12.83 +chr11 114441639 114441639 A G unknown 819.89 112 34.54 10.00 +chr11 116093734 116093734 A T hom 51.77 8 20.73 25.88 +chr11 116586283 116586283 T C hom 82.25 6 26.31 13.71 +chr11 116619390 116619390 A T unknown 262.08 43 31.46 15.42 +chr11 116631458 116631458 C T het 39.04 219 25.66 0.24 +chr11 116654159 116654159 A G het 467.79 77 29.44 8.66 +chr11 116691486 116691486 T A unknown 85.18 74 30.05 1.42 +chr11 116693751 116693751 G T het 34.15 84 29.48 0.52 +chr11 116717256 116717256 G C unknown 70.04 106 27.01 1.27 +chr11 116732512 116732512 G T hom 1185.02 36 40.28 32.92 +chr11 117050038 117050038 T G het 64.82 85 24.34 0.90 +chr11 117063995 117063995 C T het 547.58 98 22.40 5.59 +chr11 117166058 117166058 C T het 398.58 103 30.73 3.87 +chr11 117227442 117227442 T C het 61.25 25 20.20 3.22 +chr11 117258198 117258198 T C het 149.10 50 36.36 5.14 +chr11 117301679 117301679 A G het 463.58 139 22.58 3.34 +chr11 117310066 117310066 T G het 42.05 137 31.46 0.31 +chr11 117785271 117785271 A T unknown 116.81 187 31.38 0.83 +chr11 117799923 117799923 T C het 549.14 35 30.95 15.69 +chr11 117988784 117988784 A G hom 53.92 10 30.00 13.48 +chr11 118245738 118245738 A T het 74.90 155 27.63 1.00 +chr11 118260601 118260601 A T unknown 77 157 35.89 1.92 +chr11 118373671 118373671 C T het 70.33 263 36.01 0.37 +chr11 118509669 118509669 T A unknown 43.03 25 25.16 2.26 +chr11 118849423 118849423 C G hom 255.91 35 22.84 7.31 +chr11 118890910 118890910 T C unknown 32.23 140 38.41 1.01 +chr11 118949056 118949056 C G unknown 399.55 215 29.06 4.00 +chr11 118970878 118970878 A C unknown 1405.79 147 36.31 13.52 +chr11 119027486 119027486 C T unknown 36.99 128 34.20 1.95 +chr11 119027611 119027611 G T het 57.45 153 31.64 0.86 +chr11 119043745 119043745 C T unknown 986.70 55 28.79 21.45 +chr11 119060276 119060276 G A unknown 44.56 129 28.68 0.77 +chr11 119103267 119103267 A T het 213.58 128 30.86 1.67 +chr11 119290325 119290325 G T het 114.94 25 30.71 6.76 +chr11 119547817 119547817 C A unknown 41.37 158 36.15 1.22 +chr11 119692663 119692663 T C hom 3381.01 124 34.95 27.27 +chr11 120180191 120180191 A C het 95.79 156 30.33 0.87 +chr11 120350847 120350847 T G unknown 121.56 224 36.22 1.10 +chr11 121032978 121032978 G A hom 1702.58 126 38.33 13.51 +chr11 121474822 121474822 A T het 619.80 132 32.86 4.70 +chr11 122659850 122659850 G C het 121.61 232 32.11 0.72 +chr11 122738067 122738067 A C unknown 41.67 23 19.19 3.79 +chr11 123598691 123598691 A G het 152.38 8 30.40 19.05 +chr11 124029856 124029856 C A het 36.55 76 30.15 0.72 +chr11 124120302 124120302 A G hom 196.29 10 28.03 19.63 +chr11 124135147 124135147 T A hom 130.49 61 12.87 2.14 +chr11 124227543 124227543 A G het 57.26 6 28.57 14.31 +chr11 124310505 124310505 G A unknown 75.97 102 25.68 1.06 +chr11 124501084 124501084 G T het 321.79 127 35.33 3.35 +chr11 124744788 124744788 C T unknown 42.86 28 21.87 2.52 +chr11 124750357 124750357 G T het 94.88 53 27.88 1.79 +chr11 124761276 124761276 T A het 111.80 76 25.49 1.86 +chr11 124764309 124764309 C T het 97.60 61 32.64 1.60 +chr11 124955944 124955944 T C unknown 44.10 106 33.69 0.54 +chr11 124984855 124984855 C T hom 730.15 25 30.91 29.21 +chr11 125472741 125472741 T G het 392.58 130 34.98 3.02 +chr11 125617881 125617881 T C het 60.07 24 31.61 15.02 +chr11 125766044 125766044 C A hom 6710.01 196 35.78 34.23 +chr11 125889516 125889516 G T unknown 57.29 210 35.63 1.33 +chr11 126142990 126142990 T C het 246.99 178 38.93 5.74 +chr11 126147225 126147225 C G het 55.22 80 32.50 0.97 +chr11 126163455 126163455 G T unknown 268.20 189 37.88 2.00 +chr11 126294535 126294535 G A het 44.04 141 30.15 0.66 +chr11 128359240 128359240 C T het 233.59 291 32.64 0.80 +chr11 129734926 129734926 T G het 217.79 151 32.72 1.88 +chr11 129744633 129744633 G A unknown 81.11 346 36.44 0.31 +chr11 129780340 129780340 G C het 263.65 106 35.76 2.49 +chr11 129802018 129802018 T C het 983.79 191 36.28 7.29 +chr11 130275312 130275312 G T unknown 30.81 20 19.60 7.70 +chr11 130275967 130275967 T G het 398.58 127 29.54 3.14 +chr11 130332523 130332523 T C het 34.15 134 28.87 0.48 +chr11 130542931 130542931 A C het 33.02 77 29.43 0.53 +chr11 130750551 130750551 T A het 256.19 211 15.68 1.21 +chr11 130776701 130776701 A T unknown 69.02 10 32.83 13.80 +chr11 131248806 131248806 T A unknown 50.02 5 26.35 10.00 +chr11 132016197 132016197 C T het 45.96 76 22.28 0.77 +chr11 132016317 132016317 G C het 155.81 138 36.03 1.54 +chr11 133791025 133791025 C T het 100.79 104 27.54 1.31 +chr11 134073547 134073547 A G het 432.59 128 37.70 3.38 +chr11 134129747 134129747 C T het 141.61 41 35.41 3.45 +chr12 432654 432654 T A unknown 188.80 54 29.49 5.39 +chr12 442620 442620 C T unknown 460.79 109 28.17 6.78 +chr12 461523 461523 T A het 377.59 61 30.70 6.19 +chr12 494992 494992 T A unknown 37 107 35.79 1.06 +chr12 659092 659092 C G het 49.19 19 20.39 6.15 +chr12 993775 993775 T A het 163.95 74 28.24 2.88 +chr12 1023264 1023264 T C het 303.58 119 24.75 2.55 +chr12 1866799 1866799 C A het 671.22 94 21.05 7.14 +chr12 1902712 1902712 G C unknown 69.76 33 22.65 3.67 +chr12 1940361 1940361 T C het 155.79 131 27.69 1.71 +chr12 1955890 1955890 T C hom 1054.28 46 33.80 22.92 +chr12 1969435 1969435 G C het 368.79 115 26.14 4.50 +chr12 1995042 1995042 A G hom 1603.06 56 30.84 28.63 +chr12 2016550 2016550 - TTGTC hom 7141 118 25.93 60.52 +chr12 2511934 2511934 G C hom 31.77 10 13.89 15.89 +chr12 2595233 2595233 G T het 246.58 90 32.17 2.74 +chr12 2687692 2687692 A G hom 33.25 3 34.41 11.08 +chr12 2690895 2690895 T G het 161.55 213 36.41 1.55 +chr12 2717743 2717743 G C het 122.34 95 17.88 1.29 +chr12 2783702 2783702 T C het 36.88 65 35.18 0.80 +chr12 2795255 2795255 C T het 723.70 99 22.73 7.31 +chr12 2851365 2851365 T C hom 87.29 26 15.77 4.59 +chr12 2907825 2907825 C A het 113.73 124 32.38 0.92 +chr12 2936448 2936448 C A het 75.20 78 34.04 1.88 +chr12 2937298 2937298 G A unknown 98.99 67 33.46 5.50 +chr12 2939971 2939971 T G het 170.34 146 32.14 2.62 +chr12 2977837 2977837 T A unknown 107.64 259 35.15 0.79 +chr12 2994636 2994636 T A het 487.21 131 29.78 5.24 +chr12 3686044 3686044 G C het 112.82 276 35.26 0.55 +chr12 3921358 3921358 C G het 139.70 87 29.03 1.61 +chr12 4383381 4383381 G A het 40.45 52 26.66 1.04 +chr12 4643220 4643220 G C het 162.39 21 24.12 8.12 +chr12 4736445 4736445 C T het 129.45 78 23.91 1.66 +chr12 4758300 4758300 C T hom 73.29 19 26.80 4.58 +chr12 4764137 4764137 G A het 461.99 142 31.98 13.59 +chr12 4848480 4848480 G C het 240.58 83 24.71 2.90 +chr12 5021348 5021348 G C hom 4482.01 190 26.82 23.59 +chr12 5141737 5141737 C T unknown 35.14 126 8.65 0.63 +chr12 6078616 6078616 T G unknown 197.79 50 32.07 5.65 +chr12 6140749 6140749 G A hom 427.24 70 19.41 6.10 +chr12 6464511 6464511 T A het 61.60 58 31.81 1.31 +chr12 6572048 6572048 A G het 308.11 34 34.04 11.00 +chr12 6632061 6632061 G C het 99.92 210 35.80 0.71 +chr12 6637272 6637272 T G unknown 133.81 217 26.79 0.84 +chr12 6658434 6658434 C G het 38.11 41 26.47 1.36 +chr12 6788440 6788440 T C unknown 229.83 105 32.65 2.87 +chr12 6804151 6804151 C T unknown 57.63 20 19.02 4.43 +chr12 6805744 6805744 A C het 62.71 48 32.44 1.79 +chr12 6859526 6859526 A C het 92.83 80 25.88 1.39 +chr12 6884500 6884500 C G het 43.02 103 26.65 0.61 +chr12 6933400 6933400 C A het 168.81 185 35.98 1.31 +chr12 6946247 6946247 G T het 654.58 63 36.11 10.39 +chr12 6952854 6952854 C A het 81.72 100 28.68 0.82 +chr12 6966859 6966859 T G het 1145.58 163 28.68 7.03 +chr12 6979372 6979372 G A het 203.73 121 30.73 1.68 +chr12 7046231 7046231 T G unknown 45.01 150 23.06 1.25 +chr12 7065281 7065281 C T hom 1898.06 60 32.97 31.63 +chr12 7065640 7065640 T C unknown 54.99 118 32.15 1.77 +chr12 7087398 7087398 A T het 44.49 87 22.02 0.66 +chr12 7187763 7187763 A G het 91.03 72 22.32 1.49 +chr12 7287886 7287886 A C hom 1905 66 33.16 28.86 +chr12 7309988 7309988 T - het 281.56 33 27.55 8.53 +chr12 7354825 7354825 T A het 164.29 99 29.02 2.35 +chr12 7475967 7475967 C A het 179.79 260 32.82 0.97 +chr12 7521632 7521632 T G het 58.30 43 32.78 1.82 +chr12 7592139 7592139 G A het 720.53 73 20.55 9.87 +chr12 7648078 7648078 T G het 54.32 41 30.89 4.18 +chr12 7655137 7655137 A G het 721.58 75 34.14 9.62 +chr12 7719395 7719395 T C het 528.79 87 23.32 8.81 +chr12 7847940 7847940 C T hom 2946.84 97 31.79 30.38 +chr12 7868777 7868777 - T het 944.47 68 27.56 13.89 +chr12 7922550 7922550 G T het 117.20 89 26.92 1.32 +chr12 8084135 8084135 T C het 125.78 110 20.29 1.14 +chr12 8196427 8196427 T C het 120.28 176 24.88 0.96 +chr12 8200768 8200768 C A unknown 33.61 77 32.68 0.84 +chr12 8359351 8359351 C T unknown 44.01 60 15.39 1.26 +chr12 8374506 8374506 C G het 121.93 303 11.08 0.40 +chr12 8617982 8617982 G A hom 1049.07 33 32.36 31.79 +chr12 9013442 9013442 C T het 3076.78 134 33.65 22.96 +chr12 9097902 9097902 C G het 424.40 68 39.71 9.65 +chr12 9227193 9227193 T A het 107.79 150 30.80 0.97 +chr12 9230420 9230420 T G het 422.58 192 27.95 2.20 +chr12 9257041 9257041 T C unknown 39.03 38 13.95 4.34 +chr12 9266207 9266207 T A het 57.01 142 29.67 0.75 +chr12 9464847 9464847 G T unknown 156.09 80 13.84 2.36 +chr12 9822387 9822387 C G het 357.92 74 41.48 6.51 +chr12 9847448 9847448 C G het 145.80 139 29.27 1.44 +chr12 10312776 10312776 G A hom 45.01 4 25.74 11.25 +chr12 10786757 10786757 - GAA het 2963.54 198 29.23 14.97 +chr12 10871667 10871667 A G hom 1114.78 52 25.54 21.44 +chr12 11117980 11117980 T C unknown 280.52 42 30.40 10.39 +chr12 11214145 11214145 C T unknown 1282.84 309 15.67 6.11 +chr12 11332886 11332886 A T hom 42.22 5 39.41 14.07 +chr12 11506473 11506473 C G het 100.66 299 11.95 0.83 +chr12 11667024 11667024 G C het 137.83 28 30.73 6.89 +chr12 12037545 12037545 T G het 70.16 56 28.72 2.60 +chr12 12509957 12509957 G C hom 69.25 15 16.41 6.92 +chr12 13208798 13208798 G C het 252.89 145 34.80 2.18 +chr12 13211212 13211212 G A hom 146.85 10 21.48 18.36 +chr12 13248445 13248445 C A het 79.99 117 41.26 3.20 +chr12 13366504 13366504 G A het 874.79 256 35.45 4.53 +chr12 13761830 13761830 A - unknown 555.75 89 38.64 8.29 +chr12 14927421 14927421 A T het 68.65 79 34.25 2.29 +chr12 15091384 15091384 G T het 219.44 80 25.83 3.13 +chr12 15095323 15095323 A C het 73.28 8 24.28 12.21 +chr12 15807367 15807367 T C hom 241.70 13 27.60 20.14 +chr12 15818817 15818817 G A het 38.37 113 33.76 0.66 +chr12 15823708 15823708 A G het 48.76 24 26.62 2.03 +chr12 16562163 16562163 G C het 358.99 177 36.50 7.64 +chr12 17142862 17142862 A T het 166.48 39 26.51 4.62 +chr12 18793524 18793524 A T het 60.12 45 22.36 1.40 +chr12 19459323 19459323 C T het 266.58 101 25.56 2.64 +chr12 19459591 19459591 G A hom 2199.98 114 26.42 19.30 +chr12 19610455 19610455 T C het 36.44 252 13.49 0.14 +chr12 21175691 21175691 A G het 121.52 47 16.10 3.57 +chr12 21327670 21327670 C A het 52.10 57 23.84 1.74 +chr12 21369964 21369964 T C het 124.16 46 29.90 9.55 +chr12 21531437 21531437 C T het 692.60 68 36.90 10.19 +chr12 21590788 21590788 C A hom 94.78 14 20.36 8.62 +chr12 21628791 21628791 T C hom 1431.21 59 33.29 24.26 +chr12 21681925 21681925 G A het 1124.58 215 27.06 5.23 +chr12 21729065 21729065 G T unknown 277.60 54 40.53 8.67 +chr12 21733121 21733121 T G hom 36.01 4 21.44 18.01 +chr12 21789968 21789968 G T hom 4934.01 154 32.94 32.04 +chr12 21970019 21970019 C T unknown 546.79 90 35.70 10.32 +chr12 22005003 22005003 T G hom 1158.40 87 37.45 21.45 +chr12 22005258 22005258 G T het 292.84 133 32.06 3.37 +chr12 22017422 22017422 A G hom 4574.01 134 35.86 34.13 +chr12 22354921 22354921 A G hom 3356.01 121 34.15 27.74 +chr12 22354977 22354977 T A het 55.93 106 27.08 0.53 +chr12 22439594 22439594 T C het 48.81 55 22.57 0.89 +chr12 23687106 23687106 T G het 374.44 71 17.87 5.27 +chr12 25257251 25257251 A C het 31.29 67 34.47 0.71 +chr12 25261735 25261735 G T hom 2699.98 84 33.14 32.14 +chr12 25588696 25588696 C A unknown 32.51 18 31.98 6.50 +chr12 25656498 25656498 T C het 38.10 14 31.97 6.35 +chr12 26647116 26647116 G A unknown 33.51 78 33.94 0.63 +chr12 26810777 26810777 T C unknown 481.99 190 39.71 9.64 +chr12 27068983 27068983 A T unknown 389.99 102 32.33 14.44 +chr12 27110761 27110761 C T het 73.32 30 21.09 2.72 +chr12 27116226 27116226 A T het 49.01 51 27.85 1.58 +chr12 27180357 27180357 G T het 56.77 103 20.63 0.55 +chr12 27292909 27292909 G A het 107.75 79 20.67 1.36 +chr12 27533367 27533367 A G hom 2499.98 101 33.22 24.75 +chr12 27745476 27745476 C T het 1776.58 132 32.73 13.46 +chr12 29423460 29423460 G A het 804.79 128 32.85 8.30 +chr12 29423583 29423583 A G het 462.79 77 41.65 7.84 +chr12 31256021 31256021 C G unknown 30.02 48 11.56 1.11 +chr12 31944804 31944804 G C het 463.58 186 19.35 2.49 +chr12 32135441 32135441 T C hom 3545.01 111 35.80 31.94 +chr12 32480464 32480464 G T het 46.47 155 38.52 0.43 +chr12 32903704 32903704 G A unknown 36.47 156 37.55 0.55 +chr12 32908621 32908621 T C het 133.86 169 26.42 0.79 +chr12 32945495 32945495 C T het 58.99 92 32.18 2.56 +chr12 34362425 34362425 C A het 2249.58 333 20.26 6.76 +chr12 38444869 38444869 C G hom 163.66 13 20.06 14.88 +chr12 38536777 38536777 T C hom 79.67 17 13.47 5.69 +chr12 38595325 38595325 C G unknown 50.77 63 16.31 1.02 +chr12 38710583 38710583 C T het 1133.03 101 20.36 11.22 +chr12 38714175 38714175 C G het 47.62 156 10.77 0.43 +chr12 39233826 39233826 C A unknown 30.18 60 23.86 0.72 +chr12 39708938 39708938 A G het 301.84 100 26.03 3.02 +chr12 39994570 39994570 T C het 308.26 64 25.51 5.05 +chr12 39997867 39997867 G T het 203 109 35.47 7.00 +chr12 40158209 40158209 A T het 270.58 55 34.59 4.92 +chr12 40699638 40699638 T G het 140.67 100 32.80 1.41 +chr12 40714856 40714856 T A het 119.89 151 27.79 0.79 +chr12 40753303 40753303 A G het 676.70 56 29.06 12.08 +chr12 40758652 40758652 T C unknown 866.56 71 32.46 19.69 +chr12 40838146 40838146 A T het 3495.01 262 36.43 13.34 +chr12 40901621 40901621 C T unknown 71.40 53 20.42 2.38 +chr12 40927088 40927088 A G het 479.58 99 34.73 4.84 +chr12 40929663 40929663 A T unknown 48.91 82 26.14 0.82 +chr12 40951756 40951756 G A unknown 563.79 90 39.87 9.56 +chr12 41582257 41582257 C A het 117.61 53 31.38 2.22 +chr12 41966626 41966626 A C het 255.58 141 34.80 1.81 +chr12 42825717 42825717 G A het 178.60 83 21.18 2.15 +chr12 42854359 42854359 A G het 139.01 183 29.04 0.76 +chr12 43763044 43763044 A T hom 33.48 31 17.76 1.15 +chr12 45059188 45059188 A T het 125.93 37 29.57 3.70 +chr12 45209723 45209723 A G het 325.79 92 34.53 5.72 +chr12 45417412 45417412 C T het 730.79 142 33.35 7.38 +chr12 45761441 45761441 T A het 189.62 87 27.69 2.18 +chr12 46245234 46245234 G T het 37.58 234 36.30 0.34 +chr12 46345463 46345463 A G unknown 78.56 155 36.94 1.09 +chr12 46986799 46986799 A C het 39.44 68 32.90 1.16 +chr12 47628814 47628814 A C het 441.58 66 32.03 6.69 +chr12 48104842 48104842 T G hom 38.25 6 34.50 12.75 +chr12 48132451 48132451 T C hom 3065.81 109 36.57 28.13 +chr12 48132587 48132587 G T unknown 48.46 136 38.11 1.51 +chr12 48142300 48142300 C G het 42.09 117 35.11 0.84 +chr12 48177906 48177906 C T het 378.58 51 26.71 7.42 +chr12 48179089 48179089 C T het 129.19 112 28.20 1.64 +chr12 48196350 48196350 T A het 125.72 81 19.45 1.55 +chr12 48360950 48360950 A G het 88.53 83 26.20 1.48 +chr12 48888689 48888689 C G het 3899.01 186 34.77 20.96 +chr12 49171452 49171452 T G het 204.99 476 32.29 1.68 +chr12 49176872 49176872 G T het 1272.94 56 31.12 22.73 +chr12 49219138 49219138 C G het 731.88 72 27.81 10.17 +chr12 49319140 49319140 C A unknown 59.94 37 24.36 2.22 +chr12 49390607 49390607 T G unknown 43.56 130 31.94 0.60 +chr12 49425847 49425847 A - het 185.80 128 27.03 1.98 +chr12 49426007 49426007 C A unknown 75.55 121 30.33 1.20 +chr12 49433592 49433592 C G het 251.58 144 30.84 1.75 +chr12 49440007 49440007 A G het 36.62 142 34.85 0.49 +chr12 49667103 49667103 A G unknown 1161.74 57 29.03 20.38 +chr12 49690056 49690056 C G hom 35.40 11 28.61 3.93 +chr12 49717658 49717658 C A unknown 49.99 220 37.17 0.96 +chr12 49951822 49951822 C G het 127.61 61 26.44 2.84 +chr12 49997217 49997217 T C het 135.66 51 29.60 2.66 +chr12 50025684 50025684 G A unknown 81.85 197 30.18 0.56 +chr12 50040811 50040811 - G unknown 100.95 95 29.82 4.59 +chr12 50047365 50047365 G T het 35.74 99 25.19 0.69 +chr12 50055763 50055763 G T het 271.79 258 34.82 1.39 +chr12 50196770 50196770 G T het 812.58 132 28.92 6.16 +chr12 50236889 50236889 T C het 62.84 74 27.57 1.34 +chr12 50282891 50282891 T G het 60.64 37 28.16 2.43 +chr12 50344787 50344787 T G het 103.58 107 33.71 2.11 +chr12 50367996 50367996 A C het 223.84 74 25.15 3.86 +chr12 50498432 50498432 G T het 231.62 206 34.72 2.23 +chr12 50625411 50625411 A C het 253.23 144 34.21 2.41 +chr12 50749294 50749294 A G hom 45.01 4 29.30 15.00 +chr12 51502791 51502791 C T hom 1743.99 71 24.41 24.56 +chr12 51752813 51752813 A C unknown 35.89 78 28.26 0.97 +chr12 52294702 52294702 A G unknown 50 121 21.42 1.61 +chr12 52404618 52404618 T G hom 3296.01 104 34.19 31.69 +chr12 52432467 52432467 C G het 257.59 92 30.88 2.80 +chr12 52449051 52449051 T G hom 496.65 36 26.81 13.80 +chr12 52501403 52501403 T A het 1197.58 261 19.23 4.59 +chr12 52709032 52709032 T C unknown 3067.56 221 37.26 21.01 +chr12 52756584 52756584 G C unknown 30.45 64 27.63 0.60 +chr12 52776895 52776895 G A het 2663.78 117 34.86 22.77 +chr12 52779391 52779391 A G het 3512.01 136 37.90 25.82 +chr12 52789509 52789509 T C het 415.62 35 29.67 11.87 +chr12 52794273 52794273 A C het 257.60 51 23.67 5.05 +chr12 52818377 52818377 C T het 3656.01 171 35.17 21.38 +chr12 52841046 52841046 A T hom 81.07 66 14.67 1.72 +chr12 52886876 52886876 A C hom 62.31 80 9.51 0.92 +chr12 52946543 52946543 C T het 1256.57 158 28.50 7.95 +chr12 53086573 53086573 C A het 37.68 95 35.35 0.77 +chr12 53207990 53207990 G A het 33.61 62 20.29 1.12 +chr12 53241898 53241898 A C het 94.17 63 19.60 1.88 +chr12 53291585 53291585 A G unknown 100.88 36 25.44 4.04 +chr12 53445959 53445959 T C unknown 31.77 7 14.69 10.59 +chr12 53462177 53462177 C A het 142.68 61 23.00 3.40 +chr12 53547299 53547299 A C het 31.99 48 13.52 1.23 +chr12 53586503 53586503 C A het 759.58 106 32.07 7.17 +chr12 53590347 53590347 C T unknown 50 56 30.39 5.56 +chr12 53621172 53621172 T C het 43.86 74 27.17 1.46 +chr12 53662624 53662624 C A het 855.65 61 32.10 14.03 +chr12 53663969 53663969 T C het 40.78 30 31.08 2.40 +chr12 53664634 53664634 T G unknown 224.93 44 25.36 6.82 +chr12 53670545 53670545 C A het 2034.57 120 34.39 16.95 +chr12 53677089 53677089 G A hom 2712.58 114 30.00 23.79 +chr12 53722128 53722128 G A hom 3459.01 131 29.02 26.40 +chr12 53722404 53722404 A G het 313.58 61 25.90 5.14 +chr12 53937242 53937242 T C unknown 358.99 119 35.47 9.97 +chr12 54063676 54063676 T A unknown 70.61 109 23.49 0.91 +chr12 54105843 54105843 T G het 31.37 53 24.91 1.01 +chr12 54744286 54744286 C G unknown 132.80 220 22.83 0.78 +chr12 55027086 55027086 C T het 44.61 62 24.66 1.44 +chr12 55945769 55945769 C T unknown 46.96 135 23.78 0.49 +chr12 56075742 56075742 C T het 108.73 137 37.33 1.55 +chr12 56086840 56086840 C A het 346.58 75 30.83 4.62 +chr12 56087056 56087056 G C unknown 38.63 122 29.27 0.59 +chr12 56094889 56094889 T G het 117.16 129 38.21 2.13 +chr12 56216229 56216229 G C het 180.58 180 29.91 1.00 +chr12 56222422 56222422 T C het 73.77 76 28.41 2.31 +chr12 56295775 56295775 C G unknown 137.55 190 33.05 1.43 +chr12 56335281 56335281 T G het 54.43 238 32.88 0.32 +chr12 56383663 56383663 G T hom 34.63 78 21.35 0.69 +chr12 56420742 56420742 C G het 44.81 57 22.78 0.79 +chr12 56435929 56435929 C G het 636.79 81 28.34 9.65 +chr12 56436447 56436447 C T het 325.09 53 27.89 6.13 +chr12 56481636 56481636 A C unknown 32 182 34.16 0.74 +chr12 56495668 56495668 G T unknown 103.99 254 37.45 1.65 +chr12 56527323 56527323 A T het 529.86 256 34.48 2.07 +chr12 56555190 56555190 G T het 82.80 228 26.51 0.81 +chr12 56647051 56647051 G C het 61.55 86 19.75 0.93 +chr12 56733565 56733565 G A het 87.56 143 31.37 1.35 +chr12 56815281 56815281 T C het 3328.01 223 37.44 14.92 +chr12 56956341 56956341 C G het 93.07 87 22.80 1.41 +chr12 57005994 57005994 T A unknown 151.61 138 35.81 1.42 +chr12 57006813 57006813 T A unknown 127.09 173 34.03 1.59 +chr12 57111480 57111480 T C unknown 52.42 81 10.95 1.19 +chr12 57167826 57167826 A T het 53.57 135 26.80 0.70 +chr12 57335150 57335150 G A unknown 110.13 26 20.30 5.51 +chr12 57486033 57486033 A C hom 41.01 9 17.09 10.25 +chr12 57495995 57495995 C A het 293.58 96 27.19 3.06 +chr12 57496540 57496540 G A het 74.34 23 23.30 4.13 +chr12 57535276 57535276 G T het 37.70 78 30.98 0.97 +chr12 57548093 57548093 T C unknown 225.69 141 30.13 3.53 +chr12 57573813 57573813 T G het 120.83 212 26.84 0.77 +chr12 57590783 57590783 T C unknown 51.16 27 20.40 2.22 +chr12 57592901 57592901 T A unknown 173.55 144 30.42 2.67 +chr12 57600206 57600206 G A unknown 34.34 32 16.69 1.32 +chr12 57628067 57628067 C G het 406.64 188 29.26 2.16 +chr12 57865038 57865038 G T unknown 102.40 110 29.42 4.65 +chr12 57872485 57872485 C T het 152.69 91 23.50 1.68 +chr12 57894121 57894121 T A unknown 52.55 393 34.54 0.27 +chr12 57975570 57975570 A G hom 2762.98 83 34.18 33.29 +chr12 57977040 57977040 C A het 73.20 26 20.80 3.33 +chr12 58142850 58142850 A G het 542.79 78 37.04 9.52 +chr12 58163372 58163372 T A het 381.81 136 37.81 3.82 +chr12 58203773 58203773 G A het 30.08 34 37.19 2.31 +chr12 58204200 58204200 G C het 133.58 155 36.48 0.86 +chr12 59277461 59277461 A G unknown 35.04 48 24.69 0.95 +chr12 59313248 59313248 G A unknown 1507.79 136 37.00 15.08 +chr12 62940607 62940607 A C het 46.38 56 27.24 1.72 +chr12 63161143 63161143 C T unknown 43.01 9 16.73 6.14 +chr12 64458983 64458983 A T het 41.99 69 33.12 3.23 +chr12 64536328 64536328 G C het 207.69 196 37.22 1.06 +chr12 64678416 64678416 G A unknown 981.79 87 37.53 15.10 +chr12 64732294 64732294 A G het 549.58 100 26.31 5.50 +chr12 64808803 64808803 A G unknown 275.99 97 28.15 3.73 +chr12 65130846 65130846 A T het 59.43 93 28.95 1.10 +chr12 65813436 65813436 T A het 43.86 121 13.97 0.70 +chr12 68537187 68537187 T A het 36.47 29 19.95 1.74 +chr12 69080903 69080903 G A het 164.57 142 36.91 2.57 +chr12 69099826 69099826 A C het 108.56 225 15.46 0.89 +chr12 69218190 69218190 G C het 98.88 104 30.09 1.22 +chr12 69260797 69260797 G T unknown 43.29 84 25.63 1.67 +chr12 69652557 69652557 T A unknown 32.44 132 26.41 0.50 +chr12 70147464 70147464 T C hom 3606.01 100 36.81 36.06 +chr12 70330087 70330087 A G het 817.04 96 27.00 8.51 +chr12 70382545 70382545 A G unknown 78.05 17 18.01 5.20 +chr12 71003163 71003163 C G het 120.72 129 30.95 1.28 +chr12 71531639 71531639 G A het 159.84 20 30.16 8.41 +chr12 72058416 72058416 G T het 190.99 124 33.46 7.07 +chr12 72090133 72090133 A T het 60.06 46 22.14 1.50 +chr12 74686416 74686416 T C hom 367.16 15 30.88 24.48 +chr12 75715330 75715330 C A unknown 160.95 142 37.73 1.77 +chr12 75716675 75716675 A T het 51.33 44 25.32 1.60 +chr12 75895619 75895619 T C het 878.79 250 28.87 5.08 +chr12 76447113 76447113 T A het 221.79 135 17.43 1.64 +chr12 76461046 76461046 A G unknown 341.22 44 35.76 13.12 +chr12 76531933 76531933 T A het 140.80 68 32.51 2.66 +chr12 76741976 76741976 G A het 55.24 44 26.49 2.30 +chr12 77427802 77427802 A C het 70.70 87 29.41 0.81 +chr12 78400884 78400884 G A het 1790.79 220 38.02 12.18 +chr12 78511976 78511976 C T het 71.80 225 30.80 0.42 +chr12 78540048 78540048 G T het 39.30 33 28.42 1.79 +chr12 78542699 78542699 T C unknown 1007.57 79 30.78 19.01 +chr12 78571562 78571562 C T unknown 43.57 118 35.41 1.56 +chr12 79689789 79689789 C T het 93.99 75 36.24 5.53 +chr12 80616090 80616090 G T het 36.66 29 24.10 3.06 +chr12 80633279 80633279 A C het 42.90 69 25.15 0.95 +chr12 80733101 80733101 T A hom 106.27 61 16.43 1.77 +chr12 80762246 80762246 G A het 428.62 44 35.75 13.39 +chr12 81102565 81102565 A C het 100.55 75 25.16 1.70 +chr12 81661113 81661113 A C unknown 41.49 70 22.85 1.38 +chr12 83444839 83444839 G T het 38.45 60 21.42 1.37 +chr12 83702783 83702783 C A unknown 33.02 3 23.90 11.01 +chr12 85257359 85257359 A T het 206.63 107 25.85 1.93 +chr12 85431923 85431923 T A het 212.02 52 28.19 6.24 +chr12 85515514 85515514 C T het 144.86 160 34.87 0.91 +chr12 88624761 88624761 T C hom 236.16 22 16.54 10.73 +chr12 89918219 89918219 T C het 215.51 98 30.22 2.20 +chr12 89992896 89992896 G A het 153.72 175 35.07 1.15 +chr12 90013901 90013901 T G unknown 35.99 204 38.13 1.71 +chr12 92821861 92821861 T - het 3017.06 96 35.71 31.43 +chr12 93205112 93205112 A C unknown 69.70 88 29.30 2.32 +chr12 93252188 93252188 A T het 178.34 81 17.69 4.46 +chr12 93252491 93252491 G T het 835.58 106 27.40 7.88 +chr12 94984896 94984896 C T het 451.14 47 25.65 9.60 +chr12 95604232 95604232 T C het 611.10 174 34.05 3.51 +chr12 95906603 95906603 C A unknown 628.99 181 35.31 11.44 +chr12 96370455 96370455 G C het 240.58 115 31.71 2.09 +chr12 97338696 97338696 G A hom 249.54 29 22.87 10.40 +chr12 97345824 97345824 A G het 54.27 55 24.93 1.02 +chr12 98698672 98698672 T C hom 45.77 5 23.16 15.26 +chr12 98927573 98927573 T A het 37.24 81 24.82 0.74 +chr12 99640428 99640428 T C unknown 3457.01 265 34.85 19.42 +chr12 99793457 99793457 A G het 102.78 205 31.00 0.50 +chr12 100175949 100175949 A G unknown 50.84 49 26.19 1.41 +chr12 100552860 100552860 G C hom 73.76 26 19.10 2.84 +chr12 100617525 100617525 T C het 37.20 76 28.75 0.83 +chr12 100646135 100646135 A - unknown 145.38 75 28.24 2.74 +chr12 101510696 101510696 G A hom 579.85 30 30.07 19.33 +chr12 101603617 101603617 G T unknown 52.25 15 26.75 5.81 +chr12 101689322 101689322 A T het 201.79 65 32.16 3.10 +chr12 101732628 101732628 T A unknown 30.81 178 36.77 0.27 +chr12 102091849 102091849 G C hom 73.87 21 23.55 9.23 +chr12 102133051 102133051 G A het 31.66 32 22.99 1.44 +chr12 102183918 102183918 A G het 127.62 52 21.98 2.45 +chr12 102357749 102357749 G A het 86.07 28 24.17 4.53 +chr12 102357893 102357893 G T hom 566.64 31 33.95 18.28 +chr12 102494829 102494829 T C het 72.81 19 29.17 3.83 +chr12 102589723 102589723 T - unknown 109.23 40 23.76 3.12 +chr12 103237468 103237468 G C hom 5726.01 192 37.73 29.82 +chr12 103310942 103310942 T A unknown 96.48 99 34.73 1.25 +chr12 104069649 104069649 - A unknown 569.75 84 40.41 9.66 +chr12 104152045 104152045 A C unknown 35.12 131 28.71 0.51 +chr12 104208868 104208868 C T het 594.99 130 37.38 14.17 +chr12 104260267 104260267 T C het 89.84 133 35.02 0.85 +chr12 104309177 104309177 G A het 54.26 145 30.43 0.45 +chr12 104327773 104327773 G T unknown 83.27 162 21.81 0.85 +chr12 104341103 104341103 C T het 569.60 84 29.18 6.78 +chr12 104866607 104866607 C A hom 53.22 7 16.85 8.87 +chr12 105424258 105424258 C A unknown 40.07 81 34.53 1.38 +chr12 105428097 105428097 T G het 174.61 77 36.78 2.27 +chr12 105443689 105443689 A C het 217.93 145 34.83 2.25 +chr12 105445798 105445798 C A hom 49.25 8 16.95 6.16 +chr12 105569955 105569955 T A het 108.44 42 21.45 2.64 +chr12 106460763 106460763 G T het 79.50 64 27.43 1.62 +chr12 106480450 106480450 A G het 1073.87 48 34.37 22.37 +chr12 107075809 107075809 A T het 671.58 174 30.25 3.86 +chr12 108008772 108008772 C T unknown 290.79 64 36.25 5.93 +chr12 108029186 108029186 C A unknown 1435.79 119 35.43 16.70 +chr12 108042960 108042960 C G hom 2529.54 97 32.66 26.08 +chr12 108086895 108086895 A C het 83.87 59 33.44 1.91 +chr12 108133112 108133112 A G unknown 117.66 84 26.77 2.61 +chr12 109017061 109017061 C A unknown 54.09 67 33.44 1.64 +chr12 109185808 109185808 A G unknown 38.01 79 35.79 1.73 +chr12 109221013 109221013 C A het 829.79 179 38.19 6.64 +chr12 109286715 109286715 G A unknown 162.19 70 31.79 2.90 +chr12 109690790 109690790 G C unknown 33.01 211 31.23 0.75 +chr12 109703333 109703333 G T het 73.11 55 25.99 1.78 +chr12 109895897 109895897 A T het 373.59 84 30.80 4.45 +chr12 109945320 109945320 C A unknown 35.64 82 22.08 0.89 +chr12 109949134 109949134 C T het 411.79 98 36.07 5.72 +chr12 109955708 109955708 A C unknown 79.13 22 31.55 5.28 +chr12 110222121 110222121 C G unknown 54.57 160 29.51 1.14 +chr12 110778605 110778605 T G unknown 50.99 170 33.22 1.42 +chr12 110825608 110825608 C G het 70.66 160 28.73 0.44 +chr12 110929797 110929797 G A unknown 34.93 38 18.30 3.49 +chr12 111317817 111317817 C A het 119.62 317 33.53 0.38 +chr12 111375044 111375044 T A unknown 232.79 122 34.77 2.62 +chr12 111537622 111537622 T A unknown 49.98 17 17.32 8.33 +chr12 111750047 111750047 C A het 86.03 32 21.61 3.74 +chr12 111885264 111885264 T C het 161.79 155 33.17 1.37 +chr12 112647839 112647839 G C het 113.09 139 27.18 0.81 +chr12 112669523 112669523 G A het 71.47 90 28.64 1.10 +chr12 112920090 112920090 T A het 163.05 57 34.53 3.33 +chr12 113285532 113285532 G C het 75.85 123 27.18 1.52 +chr12 113400548 113400548 A T unknown 375.79 333 31.09 1.50 +chr12 113435293 113435293 C A het 3291.01 109 40.78 30.19 +chr12 113444255 113444255 T C het 36.97 133 27.63 0.38 +chr12 113552524 113552524 A G het 90.10 231 34.48 0.52 +chr12 113593157 113593157 A T het 45.89 81 28.90 0.79 +chr12 113664805 113664805 T G hom 143.18 34 20.25 4.94 +chr12 113744465 113744465 T A het 49.40 33 20.91 2.25 +chr12 113822925 113822925 A C hom 64.42 43 21.56 2.08 +chr12 113834981 113834981 G C het 67.28 37 25.50 2.59 +chr12 113835226 113835226 T G het 31.58 56 29.64 1.02 +chr12 114793665 114793665 C T het 223.69 55 29.08 4.07 +chr12 116408388 116408388 C G het 55.55 139 33.21 0.93 +chr12 117479785 117479785 C G unknown 63.88 17 23.53 4.91 +chr12 117992868 117992868 G A unknown 124.06 52 26.25 3.03 +chr12 118198899 118198899 C A het 215.59 84 26.95 2.57 +chr12 118199148 118199148 G T het 46.75 21 20.32 2.23 +chr12 118464911 118464911 A T het 74.28 70 24.23 1.06 +chr12 118533679 118533679 T G het 412.58 77 32.57 5.36 +chr12 119594344 119594344 C A het 315.59 62 30.21 5.09 +chr12 119938010 119938010 A C unknown 124.65 80 22.74 2.15 +chr12 119960612 119960612 G T hom 2260.57 134 39.66 16.87 +chr12 120397231 120397231 T C unknown 158.53 19 21.30 9.91 +chr12 120606093 120606093 T C het 118.13 130 34.84 0.91 +chr12 120794653 120794653 T C het 513.95 63 25.24 8.16 +chr12 121017243 121017243 A C het 793.99 219 36.38 13.23 +chr12 121138350 121138350 G T hom 282.77 12 33.93 23.56 +chr12 121201144 121201144 A T het 64.51 40 25.08 2.93 +chr12 121454257 121454257 T A het 3579.01 145 33.92 24.68 +chr12 121458464 121458464 A G het 88.84 109 23.57 1.15 +chr12 121603129 121603129 C A het 236.24 86 28.10 3.63 +chr12 122079156 122079156 C G het 60.71 70 26.53 1.19 +chr12 122079441 122079441 T C het 561.55 132 38.25 10.60 +chr12 122213469 122213469 G A het 133.07 92 28.70 1.99 +chr12 122612325 122612325 G A hom 1362.57 80 27.10 17.03 +chr12 122615302 122615302 G A het 62.89 118 34.30 0.68 +chr12 122724542 122724542 C G het 157.92 64 29.03 2.72 +chr12 122727095 122727095 T C het 259.82 67 33.15 5.53 +chr12 122990128 122990128 T G het 492.10 118 22.78 4.17 +chr12 122999596 122999596 A C het 223.49 110 29.85 2.35 +chr12 123005015 123005015 T A het 73.24 194 31.43 0.51 +chr12 123261962 123261962 T C unknown 41.29 42 37.03 4.13 +chr12 123273206 123273206 G A unknown 189.14 66 33.87 9.46 +chr12 123342629 123342633 CTCTT - hom 4968 102 29.35 48.71 +chr12 123344021 123344021 G A unknown 38.99 91 31.99 1.70 +chr12 123345762 123345762 T A het 162.89 68 27.86 3.07 +chr12 123424071 123424071 A G hom 75.22 5 26.74 18.80 +chr12 123460389 123460389 A G unknown 51.55 129 34.37 0.99 +chr12 123699201 123699203 TTT - hom 3701 108 31.78 34.27 +chr12 124229458 124229458 T A het 542.58 117 38.12 4.64 +chr12 124268699 124268699 T A het 312.59 122 34.50 2.56 +chr12 124363725 124363728 TGTC - hom 1801.03 41 28.86 43.93 +chr12 124420076 124420076 C A unknown 70.86 149 37.61 1.01 +chr12 124856519 124856519 A T het 34.17 48 27.42 1.00 +chr12 124979789 124979789 T G unknown 127.10 26 29.21 8.47 +chr12 125558558 125558558 T G unknown 64.11 122 34.88 0.74 +chr12 125834247 125834247 T A unknown 57.99 191 29.92 1.53 +chr12 126845427 126845427 C G unknown 48.01 4 27.22 16.00 +chr12 129190021 129190021 A G hom 883.86 50 31.29 17.68 +chr12 129822118 129822118 G A het 62.11 82 15.20 1.00 +chr12 130831707 130831707 T C het 323.57 73 37.93 7.52 +chr12 130834602 130834602 G A unknown 391.39 24 34.15 26.09 +chr12 130963593 130963593 G C unknown 62.74 44 15.91 2.61 +chr12 131466562 131466562 T C hom 3370.01 119 30.91 28.32 +chr12 131475568 131475568 C A unknown 30.03 122 34.37 1.04 +chr12 131487973 131487973 A G unknown 211.68 24 24.44 9.20 +chr12 131977307 131977307 A G unknown 93.04 54 15.53 1.90 +chr12 132395371 132395371 C G het 57.26 40 22.30 1.79 +chr12 132396603 132396603 C T het 797.75 73 23.27 10.93 +chr12 132426631 132426631 C A het 50.07 11 20.03 7.15 +chr12 132471408 132471408 T A het 71.73 127 28.80 0.56 +chr12 132529513 132529513 G T het 83.04 35 25.85 3.19 +chr12 132604906 132604906 T C het 144.61 39 31.35 8.51 +chr12 133063106 133063106 T C unknown 33.77 10 13.79 8.44 +chr12 133148970 133148970 C T het 41.60 32 21.54 2.97 +chr12 133198364 133198364 C G het 35.86 74 25.65 0.62 +chr12 133209317 133209317 G T het 60.42 54 23.77 1.37 +chr12 133226159 133226159 T C hom 1375.85 62 28.46 22.19 +chr12 133241085 133241085 A C unknown 71 73 22.24 1.97 +chr12 133241949 133241949 A C unknown 60.24 153 37.24 1.51 +chr12 133245092 133245092 G C unknown 37.99 174 37.14 0.95 +chr12 133294674 133294674 T C het 57.62 127 35.54 1.01 +chr12 133365507 133365507 A G het 36.37 17 17.02 2.80 +chr12 133367867 133367867 G T unknown 35.33 209 30.64 0.35 +chr12 133373366 133373366 G A het 264.58 117 29.68 2.26 +chr12 133375138 133375138 G T het 189.12 66 24.79 2.87 +chr13 19600126 19600126 G A unknown 65.22 45 8.07 4.66 +chr13 19740191 19740191 G T het 70.32 68 26.41 2.01 +chr13 19752510 19752510 C T het 33.82 149 14.46 0.41 +chr13 19997127 19997127 A C hom 63.26 46 11.55 1.47 +chr13 20717471 20717471 C T het 123.86 101 31.46 1.23 +chr13 20763160 20763160 C G het 189.58 122 28.67 1.55 +chr13 20763693 20763693 G T het 1215.58 187 32.59 6.50 +chr13 21157258 21157258 A - het 502.75 66 37.16 10.93 +chr13 21170446 21170446 A G het 58.84 57 29.93 1.44 +chr13 21523626 21523626 C T het 508.79 132 20.64 5.41 +chr13 21714714 21714714 G A het 190.22 29 29.70 6.56 +chr13 21875511 21875511 C A het 35.26 61 18.86 0.58 +chr13 23905711 23905711 A G het 1680.58 153 39.15 10.98 +chr13 23915129 23915129 A T het 294.58 114 31.94 2.58 +chr13 24190152 24190152 C T unknown 32.46 162 38.46 0.65 +chr13 24519995 24519995 C G het 63.26 41 25.56 2.11 +chr13 24823734 24823734 T G het 100.80 71 17.35 1.98 +chr13 25009554 25009554 T A het 143.20 67 22.85 2.43 +chr13 25021154 25021154 C T hom 117.35 153 5.40 1.06 +chr13 25074408 25074408 T C het 135.01 146 19.21 1.61 +chr13 25183166 25183166 C T unknown 97.61 84 12.20 1.46 +chr13 25273013 25273013 C A het 60.31 41 17.01 2.15 +chr13 25376681 25376681 G T het 261.59 129 34.58 2.03 +chr13 25433128 25433128 C A het 149.49 32 20.86 4.67 +chr13 25458267 25458267 - AATT het 1645.51 202 32.85 16.29 +chr13 25802491 25802491 A G unknown 33.02 5 18.50 11.01 +chr13 26127890 26127890 G A het 976.79 158 39.11 9.13 +chr13 26273385 26273385 G C hom 2247.03 105 30.10 21.40 +chr13 26343392 26343392 C T het 363.58 66 31.32 5.51 +chr13 27861171 27861171 A G unknown 47.77 6 21.09 15.92 +chr13 28009031 28009031 G C unknown 2479.56 327 33.41 12.40 +chr13 28607916 28607916 T A hom 579.90 32 33.05 18.12 +chr13 28958961 28958961 A T het 54.01 66 31.09 0.93 +chr13 30077129 30077129 G C het 328.58 95 31.34 3.46 +chr13 31036681 31036681 A G hom 3797.01 191 24.22 19.88 +chr13 31037903 31037903 G C hom 1521.72 45 37.40 33.82 +chr13 31221021 31221021 T C het 80.43 44 21.09 1.92 +chr13 31495733 31495733 C T het 143.07 98 31.89 6.81 +chr13 31848823 31848823 A G het 1364.80 55 34.27 24.81 +chr13 31861059 31861059 G A unknown 58.70 9 26.31 7.34 +chr13 32376718 32376718 A G unknown 45.77 5 33.44 11.44 +chr13 32776153 32776153 T C het 185 102 33.23 5.78 +chr13 32776253 32776253 A T unknown 257 95 39.24 8.29 +chr13 32800145 32800145 A C unknown 1198.79 93 40.74 16.88 +chr13 32821633 32821633 T C het 545.60 98 30.62 5.57 +chr13 32825941 32825941 C A het 158.55 91 37.53 3.24 +chr13 32835573 32835573 A C het 106.42 109 34.82 0.98 +chr13 32836587 32836587 A C unknown 58.99 100 31.28 2.18 +chr13 32885744 32885744 G T unknown 33.82 24 21.96 2.82 +chr13 33268573 33268573 T C unknown 66.47 15 29.96 13.29 +chr13 33333876 33333876 A C unknown 711.24 69 33.16 16.93 +chr13 33635939 33635939 T A hom 2920.99 89 34.34 32.82 +chr13 33686970 33686970 T C het 251.59 230 31.66 1.09 +chr13 33692217 33692217 G T unknown 74.02 159 34.07 3.52 +chr13 34404793 34404793 A T unknown 47.57 80 35.91 1.90 +chr13 35806862 35806862 G T het 101.30 38 29.90 7.79 +chr13 35926354 35926354 A G het 475.58 187 31.94 2.54 +chr13 36046486 36046486 C A unknown 36.50 38 25.30 1.22 +chr13 36229873 36229873 C T unknown 314.99 174 41.64 10.86 +chr13 36767708 36767708 T C het 234.92 89 23.85 4.20 +chr13 36801415 36801415 C T het 2116.57 115 34.55 18.40 +chr13 36869894 36869894 T C het 36.94 47 21.58 1.42 +chr13 37012024 37012024 G A het 288.83 153 36.79 1.89 +chr13 37207193 37207193 T C unknown 49.77 7 20.36 9.95 +chr13 37302582 37302582 T A het 56.04 50 26.18 1.70 +chr13 37500596 37500596 A T unknown 40.26 14 16.87 3.36 +chr13 37678264 37678264 T A het 64.72 39 27.65 2.94 +chr13 38144842 38144842 C G het 192.36 72 28.94 2.67 +chr13 38172896 38172896 G C unknown 173.99 160 35.92 4.70 +chr13 38924263 38924263 T C hom 5292.01 153 35.37 34.59 +chr13 39265938 39265938 A T het 58.67 166 37.03 0.76 +chr13 39613611 39613611 A G unknown 287.73 44 35.03 9.92 +chr13 40181185 40181185 G A hom 61.98 4 23.32 20.66 +chr13 40301683 40301683 G A unknown 60.81 166 34.95 1.00 +chr13 40652219 40652219 G A unknown 40.25 12 19.43 5.03 +chr13 41948805 41948805 C G unknown 30.06 38 32.26 1.37 +chr13 42644580 42644580 A T unknown 165.59 54 16.82 4.73 +chr13 42875683 42875683 A G unknown 259.99 143 39.95 8.67 +chr13 44456349 44456349 A C het 52.80 116 35.83 0.69 +chr13 44456507 44456507 T A het 75.13 40 17.09 4.42 +chr13 45150078 45150078 C A unknown 39.08 22 27.07 2.06 +chr13 45554933 45554933 T G het 77.09 76 19.70 1.12 +chr13 46067593 46067593 G A het 3376.01 171 35.58 19.74 +chr13 46070213 46070213 G A het 105.85 71 22.28 1.83 +chr13 46425523 46425523 G A unknown 55.28 62 32.84 1.68 +chr13 46543419 46543419 G T het 244.80 119 30.55 3.10 +chr13 46924324 46924324 C A het 99.60 158 34.25 0.63 +chr13 46936649 46936649 G C het 222.78 47 21.75 4.74 +chr13 47266648 47266648 A G het 1012.59 98 26.86 10.33 +chr13 47356999 47356999 G C het 74.21 90 33.48 0.91 +chr13 47358540 47358540 T C het 994.71 45 25.32 22.10 +chr13 49649596 49649596 T G het 179.82 101 31.44 2.68 +chr13 49794767 49794767 C A hom 62.88 33 30.62 2.86 +chr13 50080847 50080847 A G hom 2222.85 69 38.79 32.22 +chr13 50192259 50192259 C T unknown 37.77 4 21.74 12.59 +chr13 50205111 50205111 C T hom 52.27 25 22.16 2.75 +chr13 50275515 50275515 C T hom 138.35 12 22.06 12.58 +chr13 50467124 50467124 T C hom 231.92 62 10.65 4.22 +chr13 51285982 51285982 T A unknown 31.77 4 22.99 7.94 +chr13 51523619 51523619 C A unknown 61.03 112 37.29 1.74 +chr13 51602562 51602562 T A het 72.97 145 35.32 0.69 +chr13 51825548 51825548 T C unknown 458.99 123 34.84 15.30 +chr13 52004374 52004374 A T het 89.08 141 37.97 1.05 +chr13 52330578 52330578 C T het 70.42 104 28.06 1.44 +chr13 52603896 52603896 G A het 827.79 280 22.08 4.29 +chr13 52803678 52803678 A C het 179.62 46 22.77 3.90 +chr13 53624642 53624642 C G unknown 61.56 101 28.69 1.37 +chr13 55015402 55015402 C T het 116.27 86 15.92 1.82 +chr13 56573623 56573623 A C het 230.80 47 30.29 4.91 +chr13 58207406 58207406 C T het 160.78 133 35.29 1.67 +chr13 60590307 60590307 C T unknown 925.56 61 35.69 21.52 +chr13 60849330 60849330 C G het 180.82 85 21.86 2.26 +chr13 61985904 61985904 C G het 37.63 122 32.59 0.72 +chr13 62334287 62334287 C T het 1036.58 137 30.97 7.57 +chr13 65532178 65532178 C T het 478.79 120 31.10 5.38 +chr13 65532602 65532602 G A het 109.01 114 22.81 2.18 +chr13 70681305 70681305 G A unknown 275.99 136 34.00 8.12 +chr13 72131160 72131160 T A het 51.99 170 34.43 1.24 +chr13 75868928 75868928 A T het 30.56 68 35.89 1.18 +chr13 76382028 76382028 A G het 267.58 231 24.50 1.16 +chr13 76445045 76445045 A C unknown 128.77 261 36.91 0.93 +chr13 76447791 76447791 A C het 159.25 97 26.96 1.64 +chr13 77581324 77581324 G T unknown 38.99 202 39.31 2.05 +chr13 77661582 77661582 T A unknown 45.29 26 28.35 2.52 +chr13 77699437 77699437 A T het 140.94 212 33.71 0.95 +chr13 77725117 77725117 T A unknown 71.86 73 24.95 1.50 +chr13 78167676 78167676 A T het 63.40 73 22.81 0.95 +chr13 78293620 78293620 C T het 414.99 136 36.32 11.86 +chr13 79190890 79190890 G C het 93.64 97 37.80 1.64 +chr13 79216417 79216417 C T het 38.84 69 31.04 0.86 +chr13 79425415 79425415 A G unknown 49.30 39 31.44 3.52 +chr13 94197647 94197647 T G het 266.70 154 34.55 2.52 +chr13 95112253 95112253 G C unknown 43.93 83 35.02 1.22 +chr13 95271472 95271472 T A het 110.70 198 34.05 0.63 +chr13 95364286 95364286 G T unknown 41.73 51 24.40 1.02 +chr13 95696619 95696619 A C het 295.09 70 28.69 4.68 +chr13 95714976 95714976 C T hom 5239.01 156 34.54 33.58 +chr13 95859974 95859974 T C hom 512.57 17 31.09 32.04 +chr13 95861981 95861981 C G hom 84 7 30.54 21.00 +chr13 95863008 95863008 C A unknown 211.79 64 33.06 4.51 +chr13 96513187 96513187 T C het 440.20 69 33.84 9.17 +chr13 96638651 96638651 C T unknown 862.08 80 33.20 15.67 +chr13 97999261 97999261 G C unknown 70.85 68 32.36 1.86 +chr13 98019036 98019036 C T het 154.07 51 39.87 9.63 +chr13 98668037 98668037 T C het 62.96 51 34.61 1.70 +chr13 99091492 99091492 G C het 230.62 43 24.18 5.36 +chr13 99092288 99092288 T C unknown 129.09 228 32.19 2.81 +chr13 99098882 99098882 A C hom 1378.99 48 29.58 28.73 +chr13 99515286 99515286 A G het 900.58 313 20.15 2.88 +chr13 100207871 100207871 A C het 152.83 133 35.23 1.15 +chr13 100635093 100635093 A G het 471.58 255 31.28 1.85 +chr13 100962110 100962110 A T unknown 131.43 136 35.57 1.22 +chr13 101997762 101997762 G C het 144.61 112 20.49 1.72 +chr13 102047624 102047624 A T het 196.47 288 37.13 0.99 +chr13 103303639 103303639 G C het 46.55 85 32.63 1.50 +chr13 103321211 103321211 A G het 66.29 16 25.13 4.42 +chr13 103328619 103328619 C A het 99.97 26 28.14 4.76 +chr13 103524714 103524714 C T het 427.01 140 39.03 3.05 +chr13 103718357 103718357 G T het 285.79 240 32.39 1.61 +chr13 107862841 107862841 T C het 2564.54 103 33.16 24.90 +chr13 109496928 109496928 C T het 1925.59 83 30.99 23.20 +chr13 109540782 109540782 G A unknown 175.99 116 29.35 2.10 +chr13 109793720 109793720 A C het 826.48 29 32.96 28.50 +chr13 110813523 110813523 C T unknown 957.79 120 34.83 11.54 +chr13 110827574 110827574 T A hom 1125.57 116 34.62 9.70 +chr13 111099122 111099122 G A hom 5248.01 189 33.66 27.77 +chr13 111290844 111290844 G C unknown 102.18 88 24.75 1.38 +chr13 112278488 112278488 T C het 320.61 166 33.38 1.93 +chr13 113200213 113200213 C A het 134.65 106 20.17 1.27 +chr13 113474302 113474302 C A unknown 91.83 45 23.99 2.78 +chr13 113487074 113487074 C - unknown 891.75 125 32.26 9.19 +chr13 113527967 113527967 G A het 547.79 82 35.88 8.98 +chr13 113708717 113708717 - G het 436.54 112 23.97 3.90 +chr13 113742606 113742606 G T het 565.93 193 37.73 2.93 +chr13 113824782 113824782 A C het 394.58 160 36.61 2.47 +chr13 113883865 113883865 T G unknown 108.73 60 29.78 3.20 +chr13 113889355 113889355 A G unknown 171.99 128 38.08 6.88 +chr13 113979919 113979919 C - het 180.39 41 16.72 6.01 +chr13 114204084 114204084 C T het 366.58 68 33.91 5.39 +chr13 114312354 114312354 T G unknown 31.77 7 20.14 15.89 +chr13 114787028 114787028 C A unknown 36.15 51 27.16 1.81 +chr14 19443424 19443424 A G hom 30.02 9 16.65 7.50 +chr14 19574243 19574243 C A het 161.89 40 20.46 4.26 +chr14 19684242 19684242 A T unknown 94.84 42 22.53 3.39 +chr14 20612273 20612273 T C unknown 45.99 269 23.07 0.73 +chr14 20815123 20815123 G A het 547.72 84 26.04 6.52 +chr14 20836488 20836488 T G het 104.92 46 22.67 3.62 +chr14 20841181 20841181 C A het 163.60 107 25.67 1.53 +chr14 20841313 20841313 G A unknown 405.99 251 35.38 7.25 +chr14 20863874 20863874 T G het 31.86 54 26.75 0.94 +chr14 21161759 21161759 C T unknown 66.32 181 32.98 0.50 +chr14 21215692 21215692 C T het 1031.57 96 28.31 10.75 +chr14 21387872 21387872 C T hom 39.26 33 11.22 1.57 +chr14 21464455 21464455 G A het 734.58 216 31.56 3.40 +chr14 21486054 21486054 T C unknown 741.79 131 35.39 7.73 +chr14 21511459 21511459 C T het 59.84 174 14.67 0.50 +chr14 21526044 21526044 T C hom 755.35 58 23.76 13.02 +chr14 21541229 21541229 T A het 268.79 161 34.66 2.20 +chr14 21559753 21559753 T C het 131.72 50 26.93 2.63 +chr14 21821587 21821587 G T het 422.09 54 24.96 7.82 +chr14 21822027 21822027 A G het 56.87 60 26.19 0.95 +chr14 21854169 21854169 C T het 119.95 187 35.50 0.88 +chr14 21868805 21868805 G T het 331.49 90 27.32 4.95 +chr14 22038210 22038210 G T het 3650.01 298 34.22 12.25 +chr14 22192069 22192069 T A het 97.96 121 22.64 1.13 +chr14 22309328 22309328 T C het 45.01 63 27.59 2.25 +chr14 22310031 22310031 A T het 769.58 121 27.16 6.36 +chr14 22337407 22337407 T C het 163.55 267 32.32 1.17 +chr14 23103355 23103355 C T het 255.83 186 26.91 1.97 +chr14 23240871 23240871 C T hom 58.27 56 21.34 1.24 +chr14 23354699 23354699 A G het 148.01 14 27.23 18.50 +chr14 23465434 23465434 A T het 70.87 152 33.76 0.58 +chr14 23503999 23503999 C G het 70.09 82 29.51 1.19 +chr14 23530280 23530280 G C unknown 55.59 83 33.47 1.36 +chr14 23548177 23548177 T A het 324.80 95 32.97 3.42 +chr14 23564450 23564450 C A het 221.59 158 33.98 1.40 +chr14 23586803 23586803 G C unknown 96.60 86 31.34 2.20 +chr14 23598952 23598952 A G het 774.99 389 37.95 8.33 +chr14 23727915 23727915 T G het 48.29 42 17.67 1.93 +chr14 23733725 23733725 C T unknown 37.17 27 34.78 7.43 +chr14 23851876 23851876 C A het 73.92 71 25.75 1.32 +chr14 23863648 23863648 C G unknown 40.08 17 16.03 4.45 +chr14 23874098 23874098 C G het 97.39 124 34.61 1.55 +chr14 23884318 23884318 C G het 116.40 152 13.87 1.00 +chr14 23994134 23994134 T G het 62.86 73 31.97 1.23 +chr14 24026556 24026556 T C unknown 39.16 24 26.82 2.30 +chr14 24435513 24435513 A G hom 237.92 120 13.05 2.38 +chr14 24517420 24517420 A T unknown 123.95 125 22.81 1.25 +chr14 24608619 24608619 G C unknown 32.03 155 36.50 0.73 +chr14 24610139 24610139 C A unknown 85.40 104 33.11 1.09 +chr14 24621032 24621032 C A unknown 38.17 57 21.91 0.85 +chr14 24659409 24659410 CT - unknown 604.75 70 33.63 12.09 +chr14 24710923 24710923 C T het 62.17 48 29.56 1.55 +chr14 24739043 24739043 G A het 64.27 20 31.79 10.71 +chr14 24739092 24739092 T A het 34.11 30 28.67 2.27 +chr14 24769377 24769377 A C het 30.32 186 35.93 0.34 +chr14 24776401 24776401 C A hom 168.14 7 35.58 28.02 +chr14 24776470 24776470 G A het 58.49 48 28.70 1.22 +chr14 24805463 24805463 G T het 131.99 186 32.62 3.77 +chr14 24884440 24884440 T G het 49.11 68 25.79 0.96 +chr14 24900151 24900151 C T het 122.12 41 31.11 2.98 +chr14 24975290 24975290 C G unknown 143.19 127 34.42 1.40 +chr14 31347073 31347073 C T unknown 176.02 20 34.46 14.67 +chr14 31388257 31388257 C G het 509.99 204 37.15 10.20 +chr14 31424940 31424940 C G het 134.03 53 25.98 3.94 +chr14 31535603 31535603 G C hom 3032 91 33.21 33.32 +chr14 31542129 31542129 G A het 48.81 58 23.84 0.84 +chr14 31554055 31554055 C T unknown 67.99 161 32.30 1.84 +chr14 31778338 31778338 A C het 116.85 273 37.48 0.78 +chr14 32560322 32560322 G C hom 115.99 108 9.15 1.61 +chr14 34955221 34955221 C A unknown 53.31 56 13.02 1.52 +chr14 34955352 34955352 A G hom 126.80 86 9.56 2.49 +chr14 35732299 35732299 T A het 55.28 61 14.16 1.49 +chr14 35786407 35786407 A T unknown 32.76 88 18.11 0.66 +chr14 35898937 35898937 A T hom 70.36 20 27.34 4.40 +chr14 36153029 36153029 A C het 80 41 24.88 5.33 +chr14 36350256 36350256 G T het 66.58 70 27.95 1.26 +chr14 36777460 36777460 C T het 123.85 105 31.39 1.63 +chr14 37132559 37132559 G A het 110 78 26.39 1.80 +chr14 44975441 44975441 T G het 95.21 135 32.12 1.02 +chr14 45329952 45329952 T C het 349.58 99 21.84 3.53 +chr14 45414264 45414264 C G het 66.11 149 31.03 0.61 +chr14 45473247 45473247 C A het 50.44 39 28.06 1.29 +chr14 45473531 45473531 T A het 35.09 87 34.34 0.69 +chr14 45605172 45605172 C G het 50.97 70 34.64 1.08 +chr14 47315127 47315127 G A unknown 89.29 52 34.67 5.58 +chr14 48687389 48687389 A C unknown 45.01 2 39.12 22.50 +chr14 50101393 50101393 C G hom 30.14 41 28.06 1.59 +chr14 50195688 50195688 T G het 74.31 151 38.44 0.69 +chr14 50201336 50201336 A C het 196.76 115 37.75 1.82 +chr14 50246951 50246951 C A het 50.55 110 39.24 1.18 +chr14 50298981 50298981 C A het 50.62 110 31.90 0.79 +chr14 50300310 50300310 A G hom 1349.06 39 35.21 34.59 +chr14 50360716 50360716 G C het 85.21 77 22.94 1.40 +chr14 50597534 50597534 T G het 47.93 18 29.11 3.00 +chr14 50616746 50616746 A G het 233.58 91 28.17 2.57 +chr14 50714001 50714001 A G het 347.42 37 26.77 9.39 +chr14 50792273 50792273 A G het 1524.58 130 33.37 11.73 +chr14 50802840 50802840 A G het 2024.58 205 38.56 9.88 +chr14 50845231 50845231 C A het 1353.58 109 36.41 12.42 +chr14 50863941 50863941 A G unknown 260.79 162 29.37 2.07 +chr14 51410928 51410928 A G unknown 30.34 51 13.79 1.17 +chr14 52224005 52224005 G A het 227.82 125 11.48 1.82 +chr14 52509131 52509131 G A het 3441.01 137 37.20 25.12 +chr14 52535648 52535648 G T hom 203.63 54 26.67 3.77 +chr14 52735108 52735108 C T het 615.79 64 38.90 13.68 +chr14 52906081 52906081 T G hom 917.56 79 32.55 16.68 +chr14 53174981 53174981 C T hom 996.57 65 33.36 19.54 +chr14 54418986 54418986 T C hom 2560.98 90 30.40 28.46 +chr14 55169027 55169027 T A het 206.85 202 36.38 1.02 +chr14 55231171 55231171 A C het 860.58 165 24.50 5.22 +chr14 55471833 55471833 T A het 69.61 234 19.50 0.30 +chr14 55530098 55530098 A T het 80.99 66 30.45 5.79 +chr14 55604255 55604255 T G het 206.68 34 30.60 6.08 +chr14 55903651 55903651 G A unknown 95.55 168 33.41 1.33 +chr14 56106779 56106779 T A het 55.33 127 32.03 0.67 +chr14 56433179 56433179 C A unknown 84 4 40.71 28.00 +chr14 57445276 57445276 G T het 59.12 98 15.70 0.73 +chr14 57713352 57713352 T G het 181.47 108 25.91 2.97 +chr14 57736191 57736191 T G het 32.09 42 31.93 1.04 +chr14 57747175 57747175 C A het 77.62 90 34.11 1.85 +chr14 57857967 57857967 G C het 50.33 40 21.04 1.57 +chr14 58471355 58471355 T C hom 1291.57 82 32.25 15.75 +chr14 58605790 58605790 G A het 3315.01 186 34.92 17.82 +chr14 58608005 58608005 T G het 57.74 75 16.50 0.96 +chr14 58680377 58680377 G T unknown 47.65 94 35.56 1.40 +chr14 58869510 58869510 T C hom 7987.01 228 33.65 35.03 +chr14 59789586 59789586 A G hom 3007.28 102 34.12 29.48 +chr14 59798473 59798473 C G hom 2307.57 140 35.60 16.48 +chr14 60072060 60072060 G C het 33.56 90 29.82 0.50 +chr14 60097104 60097104 A T unknown 31.67 139 32.75 0.30 +chr14 60426771 60426771 T C het 835.95 56 31.67 14.93 +chr14 60451922 60451922 T G het 32.63 92 33.63 1.05 +chr14 61442468 61442468 G A het 96.99 185 36.14 1.67 +chr14 62193402 62193402 C A het 94.90 37 21.55 2.56 +chr14 62211517 62211517 C G het 76.25 48 26.35 1.77 +chr14 62213830 62213830 T G unknown 65.92 145 32.15 0.65 +chr14 62463120 62463120 G - unknown 56.22 210 25.79 0.64 +chr14 64034774 64034774 G T het 30.84 77 16.84 0.60 +chr14 64462007 64462007 A C het 156.07 83 34.31 7.80 +chr14 64568757 64568757 T G het 483.58 109 26.63 4.44 +chr14 64572907 64572907 C T unknown 52.27 11 23.73 10.45 +chr14 65054816 65054816 C T het 61.99 180 35.26 1.68 +chr14 65054858 65054858 T C het 1724.79 204 38.29 11.81 +chr14 65242125 65242125 C T hom 230.22 31 27.91 10.96 +chr14 65262142 65262142 G C het 163.41 87 26.37 1.88 +chr14 65510971 65510971 C T unknown 1549.79 216 38.12 10.00 +chr14 65550816 65550816 T A het 2002.58 158 37.13 12.67 +chr14 65935025 65935025 T A hom 81.15 180 10.64 0.45 +chr14 66136163 66136163 C A het 920.79 187 33.35 6.67 +chr14 66346446 66346446 T G hom 798.46 144 17.87 5.54 +chr14 68024134 68024134 A T het 3018.78 172 30.40 17.55 +chr14 68024198 68024198 C G het 221.81 70 23.49 4.27 +chr14 68035878 68035878 C T het 182.91 96 28.47 2.65 +chr14 68039027 68039027 A G hom 471.38 22 24.45 21.43 +chr14 68041124 68041124 G C hom 1225.99 47 27.26 26.08 +chr14 68082978 68082978 G A hom 122.14 29 15.66 5.31 +chr14 68189216 68189216 G A het 69.55 35 16.36 1.99 +chr14 68242898 68242898 G A unknown 1931.56 119 34.59 20.12 +chr14 68244947 68244947 C G het 164.54 275 35.99 0.84 +chr14 68282603 68282603 C G unknown 34.99 170 34.68 1.13 +chr14 69346813 69346813 C A unknown 86.85 83 23.13 1.34 +chr14 69378958 69378958 T G het 347.62 177 28.82 1.96 +chr14 69676946 69676946 G A het 473.87 127 31.02 3.92 +chr14 70263546 70263546 A G het 313.41 64 27.84 4.90 +chr14 70490216 70490218 GCA - het 892.57 123 19.11 7.26 +chr14 70713926 70713926 G C hom 44.63 138 13.25 0.58 +chr14 70883619 70883619 G A het 75.81 103 22.72 0.74 +chr14 71209106 71209106 A C unknown 65.60 147 39.24 0.91 +chr14 71455564 71455564 T G het 84.87 48 28.69 1.77 +chr14 73002923 73002923 C T unknown 58.99 327 37.08 0.84 +chr14 73138323 73138323 C G het 392.58 67 36.44 5.86 +chr14 73360949 73360949 A G hom 164.12 12 22.69 13.68 +chr14 73404825 73404825 G C het 220.99 360 37.12 3.07 +chr14 73572825 73572825 G A hom 1356.60 171 29.44 7.93 +chr14 73664853 73664853 G T hom 997.57 85 32.47 11.74 +chr14 73673072 73673072 G T het 97.70 88 30.31 1.71 +chr14 73721372 73721372 A G het 188.58 101 30.40 1.87 +chr14 73725823 73725823 G T het 45.76 78 28.19 1.02 +chr14 73958979 73958979 T G unknown 66.40 144 34.75 0.59 +chr14 74062056 74062056 G C het 319.63 171 26.97 1.87 +chr14 74205487 74205487 G T unknown 82.75 71 31.09 2.12 +chr14 74307246 74307246 C A hom 168.66 18 20.08 9.92 +chr14 74343981 74343981 T A hom 219.72 22 18.65 9.99 +chr14 74413129 74413129 C G hom 6366.01 232 34.10 27.44 +chr14 74753477 74753477 C G het 32.13 130 29.36 0.25 +chr14 74756122 74756122 G T het 36.96 34 24.20 1.95 +chr14 74825547 74825547 C T unknown 35 122 28.73 1.13 +chr14 74976051 74976051 G T unknown 69.65 121 30.67 1.12 +chr14 75136902 75136902 C A unknown 69.84 85 25.05 1.07 +chr14 75245197 75245197 G C het 224.99 223 34.11 1.81 +chr14 75413513 75413513 A T het 39.03 56 30.11 1.45 +chr14 75489470 75489470 G C het 1029.59 123 21.83 8.37 +chr14 75583268 75583268 T C hom 456.28 45 26.46 16.30 +chr14 75643198 75643198 C G het 96.80 135 30.88 0.98 +chr14 76200344 76200344 G C het 75.02 154 39.89 1.53 +chr14 77275630 77275630 C A het 199.99 56 33.28 16.67 +chr14 77605959 77605959 G A unknown 36.12 15 29.38 6.02 +chr14 77710587 77710587 C T unknown 49.59 88 28.48 1.15 +chr14 77796004 77796004 G A het 34.53 79 27.15 0.59 +chr14 77845121 77845121 A G hom 2608.08 96 34.61 27.17 +chr14 77917643 77917643 T C het 552.58 251 37.68 2.20 +chr14 78174149 78174149 A G het 82.78 56 27.06 2.67 +chr14 78184946 78184946 C A het 31.63 24 29.16 2.43 +chr14 78657484 78657484 G A hom 47.25 12 22.05 11.81 +chr14 78904456 78904456 A G unknown 41.26 5 27.00 20.63 +chr14 78993170 78993170 A C hom 1529.56 147 37.88 15.14 +chr14 80669565 80669565 T G het 76.37 188 34.46 0.58 +chr14 81470024 81470024 A G het 90.11 32 30.28 10.01 +chr14 81574661 81574661 G T het 134.62 42 20.77 3.21 +chr14 81744553 81744553 T C het 96.22 185 37.63 1.25 +chr14 81744736 81744736 A G hom 6729.01 194 35.01 34.69 +chr14 81862393 81862393 T C unknown 137.77 163 32.62 1.74 +chr14 88237600 88237600 A G hom 216.02 48 14.60 5.54 +chr14 88707237 88707237 A G unknown 48.15 43 20.54 2.67 +chr14 88903872 88903872 G A het 68.22 88 28.49 1.22 +chr14 89042248 89042248 C T unknown 40.99 102 39.30 6.83 +chr14 89305703 89305703 G A het 32.72 47 32.80 0.71 +chr14 90455321 90455321 G C het 496.58 169 31.43 2.94 +chr14 90729565 90729565 G T het 661.84 31 32.20 21.35 +chr14 90729931 90729931 T C het 2611.78 95 36.69 27.49 +chr14 90736477 90736477 C T het 1449.60 90 32.07 16.11 +chr14 91110583 91110588 ACATAC - hom 526.45 72 16.13 9.08 +chr14 91369125 91369125 G A het 40.21 60 29.46 1.68 +chr14 91774381 91774381 G A unknown 32.08 55 31.07 2.29 +chr14 91779272 91779272 T G unknown 30.91 76 31.43 0.88 +chr14 91804441 91804441 C G het 64.55 155 36.40 0.78 +chr14 91928992 91928992 T G hom 1440.56 107 36.29 20.01 +chr14 92074657 92074657 T G het 85.46 86 24.70 1.04 +chr14 92088016 92088016 G A hom 4769.01 161 34.17 29.62 +chr14 92357509 92357509 A C het 143.83 76 34.78 1.89 +chr14 92770901 92770901 G T hom 86.22 3 37.89 28.74 +chr14 92792432 92792432 T C hom 551.40 23 32.34 23.97 +chr14 92923670 92923670 T G het 31.32 83 28.47 0.75 +chr14 93117961 93117961 A C unknown 67.13 253 38.05 1.03 +chr14 93170663 93170663 T C unknown 37.04 172 19.29 0.88 +chr14 93170897 93170897 G C unknown 44 83 18.90 1.83 +chr14 93404737 93404737 C T unknown 773.79 127 30.91 8.50 +chr14 93429074 93429074 G A het 69.49 84 33.10 1.20 +chr14 93652531 93652531 A G het 171.41 193 24.35 1.21 +chr14 94007068 94007068 A C het 218.99 158 34.41 1.74 +chr14 94088587 94088587 G A het 2368.57 177 30.70 13.38 +chr14 94156515 94156515 C T unknown 55.12 164 32.06 0.73 +chr14 94466081 94466081 C G het 588.79 86 34.03 9.06 +chr14 94510478 94510478 C G het 146.41 146 32.31 1.00 +chr14 94700064 94700064 A G het 99.14 112 28.20 1.24 +chr14 94733251 94733251 A T unknown 41.56 57 29.92 1.26 +chr14 94733474 94733474 A T het 119.35 16 32.72 14.92 +chr14 94930980 94930980 A G het 345.56 69 35.39 9.60 +chr14 94985735 94985735 C G hom 99.51 10 19.99 14.22 +chr14 95035909 95035909 G A het 48.05 103 28.58 0.63 +chr14 95217612 95217612 A G hom 41.26 9 20.16 20.63 +chr14 95234991 95234991 T G het 228.87 93 29.28 3.32 +chr14 95677306 95677306 T G het 31.38 51 30.12 0.83 +chr14 95905285 95905285 G C unknown 43.58 105 29.79 0.76 +chr14 96656067 96656067 T G hom 48.01 13 16.14 12.00 +chr14 96706881 96706881 C T het 71.73 202 34.86 0.73 +chr14 96771959 96771959 A G hom 2786.99 111 30.15 25.11 +chr14 96811020 96811020 A T het 174.85 50 21.66 3.89 +chr14 96811843 96811843 A G hom 97.76 5 27.06 24.44 +chr14 97022120 97022120 G A het 33.34 134 22.18 0.51 +chr14 97299729 97299729 A T het 79.09 60 29.13 2.03 +chr14 100161824 100161824 T A het 51.44 164 30.64 0.83 +chr14 100165694 100165694 C A unknown 47.56 121 23.25 0.85 +chr14 100357464 100357464 T G het 160.60 149 29.87 1.08 +chr14 100764839 100764839 T C hom 41.01 4 23.78 20.51 +chr14 100795635 100795635 G T unknown 106.92 31 29.71 5.94 +chr14 101200645 101200645 T C hom 1253.56 110 31.99 13.93 +chr14 101411953 101411953 A G het 1848.79 303 36.13 10.27 +chr14 101448335 101448335 G A unknown 100.78 177 24.35 1.55 +chr14 101514306 101514306 T G het 284.58 62 27.27 4.59 +chr14 101526235 101526235 A G hom 99.98 65 17.54 1.82 +chr14 102028225 102028225 A C het 94.34 65 27.57 1.97 +chr14 102028303 102028303 G C het 110.25 84 35.58 1.72 +chr14 102359324 102359324 G C het 591.79 81 34.29 10.96 +chr14 102449775 102449775 T G het 286.24 85 34.26 3.37 +chr14 102463407 102463407 A G het 156.99 101 34.75 7.48 +chr14 102467717 102467717 T G unknown 102.55 179 35.83 1.27 +chr14 102474516 102474516 C A unknown 102.62 108 24.38 1.22 +chr14 102493374 102493374 T C het 186.82 39 31.32 4.79 +chr14 102515865 102515865 A G het 73.55 92 31.95 1.53 +chr14 102805216 102805216 G T het 72.66 162 31.52 1.04 +chr14 102842991 102842991 C T het 39.45 48 35.39 0.92 +chr14 102881152 102881152 G A het 555.58 99 27.39 5.61 +chr14 102898212 102898212 T C unknown 59.91 147 32.59 0.75 +chr14 102963391 102963391 A T het 32.99 152 37.22 0.87 +chr14 103357700 103357700 C T unknown 39.07 43 29.88 3.55 +chr14 103573213 103573213 C G het 44.92 91 32.25 0.62 +chr14 103879051 103879051 T A het 149.96 93 27.94 2.17 +chr14 103932616 103932616 G A het 156.44 43 30.80 3.64 +chr14 104143697 104143697 G A het 30.85 56 26.13 0.55 +chr14 104192976 104192976 T G het 50.83 55 27.75 1.16 +chr14 104198984 104198984 T A unknown 49.93 96 31.62 0.70 +chr14 104202304 104202304 G A unknown 528.81 45 37.28 15.11 +chr14 104220529 104220529 A G het 150.50 110 25.42 1.37 +chr14 104573578 104573578 G C het 78.99 47 25.46 2.19 +chr14 104640056 104640056 C A unknown 36.92 42 28.25 1.37 +chr14 104640239 104640239 G T hom 80.22 25 27.28 4.01 +chr14 105070791 105070791 G T unknown 31.02 13 12.38 3.88 +chr14 105222076 105222076 A G unknown 42.65 77 28.30 1.25 +chr14 105242140 105242140 C A unknown 121 77 30.68 2.09 +chr14 105258893 105258893 A G hom 1098.68 90 29.95 12.21 +chr14 105297232 105297232 T G hom 1531.98 62 27.37 24.71 +chr14 105350355 105350355 A G hom 586.64 42 34.95 13.97 +chr14 105382003 105382003 T C hom 53.01 4 30.55 17.67 +chr14 105406372 105406372 C T het 4324.01 190 35.75 22.76 +chr14 105412066 105412066 C T het 85.21 207 7.49 0.79 +chr14 105418194 105418194 A G het 103.48 162 9.75 0.64 +chr14 105418347 105418347 C A unknown 48.93 160 8.07 1.40 +chr14 105618264 105618264 C A het 32.05 51 30.59 0.63 +chr14 105622223 105622223 C A het 57.32 42 22.65 2.29 +chr14 105684170 105684170 A T het 80.18 64 29.10 1.91 +chr14 105695257 105695257 G C het 979.58 173 32.12 5.66 +chr14 105946842 105946842 A G unknown 36.01 8 15.77 5.14 +chr14 106304563 106304563 G A hom 69.68 35 24.08 2.79 +chr14 106347467 106347467 A C hom 1127.29 73 24.65 15.44 +chr14 106375638 106375638 T C hom 180.44 16 17.45 12.89 +chr14 106518632 106518632 G C het 106.28 117 13.00 1.10 +chr14 106539489 106539489 G C unknown 62.69 137 15.04 0.87 +chr14 106552530 106552530 G A het 48.55 198 13.49 0.35 +chr14 106579111 106579111 T G unknown 42.30 79 11.37 0.81 +chr14 106622103 106622103 A T het 97.97 210 11.41 0.61 +chr14 106691309 106691309 G T unknown 55.63 89 36.93 1.43 +chr14 106721271 106721271 A C hom 67.25 50 10.73 1.82 +chr14 106733437 106733437 G C unknown 243.79 215 21.09 1.50 +chr14 106780848 106780848 G A het 82.79 148 8.90 0.77 +chr14 106993773 106993773 G - unknown 101.73 111 15.67 1.14 +chr14 107099188 107099188 G A het 92.01 122 15.84 0.75 +chr14 107113851 107113851 C T hom 2046.56 326 26.44 8.90 +chr14 107160069 107160069 A G unknown 133.72 122 18.64 1.10 +chr14 107170005 107170005 T C unknown 1486.79 421 22.68 4.68 +chr14 107178795 107178795 A G hom 72.76 94 6.50 1.58 +chr15 20462613 20462613 G C unknown 297.11 109 21.78 3.42 +chr15 20588497 20588497 C A het 124.22 104 15.80 1.19 +chr15 22297603 22297603 G A het 88.32 308 11.86 0.40 +chr15 22298294 22298294 C T unknown 215.60 217 18.68 2.11 +chr15 22298517 22298517 T C het 157.73 128 13.57 1.23 +chr15 22333122 22333122 T G unknown 57.15 158 17.30 1.68 +chr15 25200113 25200113 C G unknown 34.46 18 21.60 3.13 +chr15 25287077 25287077 A C het 74.72 47 19.32 1.59 +chr15 25353509 25353509 G T unknown 34.85 21 32.90 2.32 +chr15 25415809 25415809 C T hom 355.42 97 12.56 3.66 +chr15 28230282 28230282 A C unknown 45 71 34.96 2.37 +chr15 28231793 28231793 T C hom 4469.01 152 33.45 29.40 +chr15 28437220 28437220 C G het 190.80 215 33.01 1.24 +chr15 28560818 28560818 T A hom 266.67 36 19.15 7.41 +chr15 28566630 28566630 C T hom 38.77 81 5.55 2.04 +chr15 28702799 28702799 G T hom 68.20 77 11.75 1.70 +chr15 29008631 29008631 G A hom 59.25 38 11.48 2.47 +chr15 29393849 29393849 C T het 60.21 78 32.70 1.08 +chr15 29420987 29420987 C G unknown 52.58 55 24.73 1.19 +chr15 29443861 29443861 T C hom 194.45 39 21.69 4.99 +chr15 30053988 30053988 A C hom 191.59 30 19.60 6.39 +chr15 30112788 30112788 A C unknown 55.74 111 40.55 1.24 +chr15 31086892 31086892 T A het 51.43 182 17.55 0.28 +chr15 31087793 31087793 A T het 43.66 137 11.51 0.43 +chr15 31088273 31088273 - C hom 1441.55 196 16.71 7.35 +chr15 31318567 31318567 C T het 57.73 35 30.57 3.04 +chr15 31358445 31358445 T G unknown 43.52 131 38.68 1.61 +chr15 33191023 33191023 A G unknown 447.99 131 43.08 10.93 +chr15 33359257 33359257 A C het 99.99 288 35.52 1.30 +chr15 33359843 33359843 C A het 63.94 339 34.66 0.26 +chr15 33443458 33443458 C G het 632.79 133 34.66 7.19 +chr15 33445782 33445782 G C het 218.82 106 28.97 2.70 +chr15 33876517 33876517 A G hom 2171.24 66 36.69 32.90 +chr15 33955671 33955671 A G unknown 60.26 80 29.44 0.96 +chr15 34023995 34023995 C A het 140.85 104 32.37 1.35 +chr15 34030761 34030761 C T het 179.71 154 35.59 1.17 +chr15 34030865 34030865 T C unknown 241.99 132 33.85 9.68 +chr15 34064400 34064400 G T het 163.69 166 35.92 0.99 +chr15 34657695 34657695 A G het 189.72 90 19.51 2.92 +chr15 34666060 34666060 C T het 514.79 158 23.65 4.36 +chr15 35196655 35196655 A G unknown 109.15 96 30.79 2.95 +chr15 35834561 35834561 G T het 73.65 37 24.13 1.99 +chr15 36937606 36937606 A C unknown 46.77 8 18.11 23.38 +chr15 36946441 36946441 C T hom 178.85 10 25.64 17.89 +chr15 37100766 37100766 T A unknown 73.36 82 36.26 1.83 +chr15 37109220 37109220 A G unknown 127.03 22 27.63 18.15 +chr15 37109677 37109677 G C het 103.34 97 22.33 1.34 +chr15 38757459 38757459 C A het 71.42 48 22.33 2.16 +chr15 38803858 38803858 A T het 974.58 252 34.47 3.87 +chr15 39545032 39545032 T G unknown 40.77 4 22.96 13.59 +chr15 40018931 40018931 C A het 98.58 94 32.07 1.76 +chr15 40099169 40099169 T G het 34.04 138 23.45 0.49 +chr15 40491942 40491942 T A het 221.06 128 27.82 2.51 +chr15 40494498 40494498 G A het 231.27 32 28.36 11.56 +chr15 40500848 40500848 G A het 76.96 64 26.33 1.20 +chr15 40500859 40500859 T G unknown 46.02 76 31.68 1.31 +chr15 40544653 40544653 A C het 71.95 32 24.49 2.66 +chr15 40662472 40662472 G A het 77.63 122 28.24 0.64 +chr15 40916499 40916499 C T unknown 43.57 102 35.79 1.12 +chr15 41037186 41037186 T A het 107.74 39 28.75 5.99 +chr15 41067598 41067598 G A het 66.90 41 33.28 2.03 +chr15 41072085 41072085 G T het 301.58 75 32.46 4.02 +chr15 41100005 41100005 G T het 88.30 47 34.21 2.76 +chr15 41192454 41192454 T A het 108.57 111 27.91 1.94 +chr15 41230239 41230239 A C het 63.97 42 34.15 3.37 +chr15 41276158 41276158 G A hom 1804.09 75 36.12 24.05 +chr15 41379846 41379846 A T unknown 49.55 158 31.23 0.73 +chr15 41456115 41456115 C T unknown 112.55 337 22.60 0.73 +chr15 41795387 41795387 G A unknown 50.27 20 17.28 3.35 +chr15 41819283 41819283 G A unknown 898.79 130 30.20 9.27 +chr15 42028530 42028530 C A unknown 35.99 327 36.55 0.64 +chr15 42052468 42052468 A G unknown 70.63 168 34.49 0.73 +chr15 42103386 42103386 A C unknown 53.52 116 30.65 1.73 +chr15 42137581 42137581 A C het 1081.36 50 29.16 21.63 +chr15 42139038 42139038 G A hom 790.57 62 26.20 12.75 +chr15 42139642 42139642 C T unknown 171.99 94 29.71 8.19 +chr15 42149172 42149172 A C unknown 31.30 57 25.76 2.41 +chr15 42175210 42175210 C T het 151.95 66 24.27 2.76 +chr15 42178464 42178464 T G het 78.20 86 30.51 0.91 +chr15 42302396 42302396 C T het 69.82 145 28.33 0.63 +chr15 42434254 42434254 G A het 1249.58 127 34.27 9.84 +chr15 42438406 42438406 C A het 336.24 134 28.06 3.54 +chr15 42480007 42480007 T G het 81.05 176 22.23 0.46 +chr15 42717176 42717176 G A unknown 38 118 34.39 1.41 +chr15 42981648 42981648 A C het 189.81 159 35.33 1.19 +chr15 43028433 43028433 G T het 556.58 83 26.49 6.71 +chr15 43277042 43277042 A T het 152.18 152 23.72 1.09 +chr15 43408716 43408716 C T het 107.31 44 25.58 3.58 +chr15 43461738 43461738 A T het 189.64 69 25.63 2.75 +chr15 43476388 43476388 T G het 144.13 31 24.66 5.34 +chr15 43527236 43527236 A G het 552.01 33 29.07 16.73 +chr15 43573895 43573895 C A het 71.64 86 30.97 0.83 +chr15 43730669 43730669 T C het 205.58 105 26.95 1.96 +chr15 43748123 43748123 G - het 161.32 108 27.45 1.49 +chr15 43813734 43813734 T C het 115.11 210 35.72 0.80 +chr15 43927569 43927569 T A unknown 35.84 133 29.72 0.65 +chr15 43940144 43940144 A T unknown 33.06 155 7.80 0.40 +chr15 44053581 44053581 A T het 501.34 101 27.27 4.96 +chr15 44105364 44105364 T C het 643.58 274 31.93 2.35 +chr15 44116587 44116587 A T het 52.53 54 26.72 0.97 +chr15 44120590 44120590 C T het 94.27 73 29.29 1.29 +chr15 44864830 44864830 T C het 41.64 56 28.91 0.74 +chr15 44915050 44915050 T G het 895.61 128 28.04 7.00 +chr15 45411285 45411285 G T het 30.08 107 30.33 0.39 +chr15 45415009 45415009 C A hom 117.44 72 19.63 2.02 +chr15 45557456 45557456 C A unknown 749.56 56 35.02 20.26 +chr15 45706783 45706783 - C het 221.61 56 24.12 3.96 +chr15 45814139 45814139 A C hom 143.76 71 20.60 2.02 +chr15 45965743 45965743 A C unknown 164.83 148 38.28 1.50 +chr15 48444537 48444537 G T het 309.61 104 19.00 2.98 +chr15 48513186 48513186 T G het 401.58 182 33.88 2.21 +chr15 48580806 48580806 A C het 93.48 83 23.20 1.83 +chr15 48591497 48591497 T A het 43.11 115 29.59 0.37 +chr15 48936809 48936809 A T het 729.64 285 29.04 2.56 +chr15 49052529 49052529 A T het 108.59 62 26.74 1.75 +chr15 49088486 49088486 T C hom 90.27 19 23.18 6.94 +chr15 49148356 49148356 C A hom 2158.57 112 37.48 19.27 +chr15 50152583 50152583 G T hom 7408.01 206 40.42 35.96 +chr15 50303048 50303048 A T het 57.63 59 32.28 0.98 +chr15 50489759 50489759 T G unknown 45.99 178 37.55 2.56 +chr15 50550621 50550621 T C het 56.84 55 33.93 1.29 +chr15 50557738 50557738 G A het 391 69 32.11 5.67 +chr15 50904632 50904632 A T het 183.59 24 31.15 7.65 +chr15 50926619 50926619 C A het 219.60 102 27.22 2.15 +chr15 51294832 51294832 G A het 4331.01 184 31.96 23.54 +chr15 51692692 51692692 T G het 478.58 187 35.23 2.56 +chr15 51745819 51745819 T G unknown 128.88 122 33.84 1.61 +chr15 51856191 51856191 A - hom 1091.66 93 32.30 11.74 +chr15 51856438 51856438 T G het 206.68 66 24.79 3.28 +chr15 51981317 51981317 T C het 89.85 53 16.90 1.70 +chr15 52153397 52153397 G C het 938.57 52 27.85 18.05 +chr15 52252027 52252027 A T het 32.56 146 32.78 0.59 +chr15 52500739 52500739 G T het 211.10 94 28.70 2.25 +chr15 52516942 52516942 C A hom 120.76 9 24.65 24.15 +chr15 52622539 52622539 A C het 162.68 136 36.05 1.36 +chr15 52643589 52643589 C T het 61.68 179 33.52 0.46 +chr15 52688649 52688649 A T hom 53.69 37 20.84 1.45 +chr15 53049880 53049880 A T het 459.58 163 23.38 2.82 +chr15 53093260 53093260 C A unknown 45.03 3 37.58 15.01 +chr15 54529629 54529629 T C hom 1400.58 74 34.73 18.93 +chr15 55619796 55619796 T C unknown 2273.79 235 37.46 13.70 +chr15 55839395 55839395 T A het 33.95 55 31.80 0.87 +chr15 55916551 55916551 T C het 132.12 178 38.51 1.05 +chr15 57384076 57384076 C A het 101.42 165 33.52 1.43 +chr15 57809118 57809118 T C unknown 32.42 147 40.85 0.43 +chr15 57838227 57838227 G C het 115.11 41 25.34 3.39 +chr15 57848172 57848172 T G unknown 35.77 77 22.06 1.19 +chr15 58256296 58256296 C T hom 1400.57 65 36.84 21.55 +chr15 58471626 58471626 G A unknown 183.03 25 30.30 9.63 +chr15 58853307 58853307 C G hom 931.31 40 28.10 23.28 +chr15 59517042 59517042 G A het 480.58 94 30.54 5.11 +chr15 60164785 60164785 A T het 51.71 68 22.21 1.12 +chr15 60297482 60297482 A G unknown 51.14 34 17.62 1.89 +chr15 60345698 60345698 C A het 498.59 42 33.06 11.87 +chr15 60803405 60803405 A G unknown 43.09 77 30.61 1.87 +chr15 62176312 62176312 A T het 39.96 30 22.99 1.54 +chr15 62239468 62239468 C T het 310.58 93 25.62 3.34 +chr15 62560670 62560670 A G het 267.95 90 22.68 4.32 +chr15 62989789 62989789 A G unknown 1156.79 145 38.90 10.91 +chr15 63008545 63008545 C T het 86.75 60 26.77 1.45 +chr15 63019402 63019402 C A het 70.96 45 23.88 2.63 +chr15 63937209 63937209 C G hom 10253.01 287 37.21 35.72 +chr15 63970456 63970456 T C het 3568.01 235 37.50 15.18 +chr15 64008725 64008725 T G het 62.93 91 18.46 1.07 +chr15 64415841 64415841 T G het 32.37 92 34.32 0.72 +chr15 64426782 64426782 G A het 138.65 32 22.38 4.33 +chr15 64448202 64448202 A C het 389.58 148 35.66 2.63 +chr15 65107759 65107759 C T het 227.54 40 22.08 7.11 +chr15 65187969 65187969 G A unknown 43.01 8 17.14 7.17 +chr15 65489688 65489688 T C hom 5910.01 179 36.80 33.02 +chr15 65495748 65495748 G T unknown 68.11 186 32.60 1.79 +chr15 65496587 65496587 C T hom 2177.54 91 34.45 23.93 +chr15 65621825 65621825 C G unknown 35.89 45 26.21 1.99 +chr15 65685842 65685842 C A unknown 79.57 125 36.09 1.19 +chr15 65982726 65982726 A C het 402.40 225 31.44 1.99 +chr15 66044914 66044914 T C unknown 86.16 111 25.07 1.08 +chr15 66044915 66044915 C A hom 389.78 113 25.03 3.45 +chr15 66210287 66210287 A G unknown 32.99 145 37.26 0.92 +chr15 66220982 66220982 T G het 39.07 39 32.79 1.12 +chr15 66249944 66249944 G T unknown 46.67 64 25.71 1.37 +chr15 66262924 66262924 T A unknown 53.04 156 28.85 1.43 +chr15 66786916 66786916 T C unknown 87.59 133 34.33 1.14 +chr15 66829396 66829396 T G unknown 40.18 8 36.36 13.39 +chr15 67476986 67476986 C A unknown 127.03 24 21.72 8.47 +chr15 67652097 67652097 G C het 652.79 85 26.66 10.88 +chr15 67664453 67664453 T G het 501.58 115 29.61 4.36 +chr15 67757764 67757764 T C hom 766.39 25 31.68 30.66 +chr15 67885291 67885291 A T het 414.58 76 30.24 5.46 +chr15 67938849 67938849 A C unknown 101.56 122 33.18 1.95 +chr15 67950842 67950842 T G het 130.21 93 30.68 1.97 +chr15 68099276 68099276 A C unknown 33.85 44 28.89 2.82 +chr15 68122509 68122509 T C het 1127.79 118 35.86 13.43 +chr15 68490035 68490035 T C het 34.48 41 22.05 1.92 +chr15 68500500 68500500 A C unknown 98.08 93 28.48 1.36 +chr15 68649454 68649454 C G het 38.04 65 20.90 0.83 +chr15 69327825 69327825 C T hom 1203.63 63 30.13 19.11 +chr15 69676751 69676751 G A hom 53.68 32 14.70 2.33 +chr15 69715488 69715488 C - het 2033.24 118 23.81 17.23 +chr15 70515901 70515901 T A unknown 34.77 11 12.98 6.95 +chr15 70992017 70992017 A T het 36.48 61 23.47 0.79 +chr15 71184278 71184278 G T hom 281.16 20 20.06 15.62 +chr15 71185837 71185837 G A unknown 65.28 17 17.12 5.02 +chr15 72176148 72176148 T A het 143.34 34 21.58 5.51 +chr15 72191439 72191439 C T het 375.60 160 33.96 2.35 +chr15 72499422 72499422 A T het 125.61 56 24.93 2.24 +chr15 72559060 72559060 G A het 366.99 159 42.06 8.16 +chr15 72690710 72690710 G C het 80.82 77 30.43 1.47 +chr15 73128184 73128184 A G unknown 37.25 10 20.68 7.45 +chr15 73545732 73545732 T C hom 809.17 32 27.33 25.29 +chr15 73562427 73562427 A G unknown 39.99 295 32.57 0.75 +chr15 73590579 73590579 C T unknown 301.98 31 35.77 11.61 +chr15 73616303 73616303 A G het 81.84 59 26.81 1.82 +chr15 73635816 73635816 G C het 646.58 104 37.77 6.22 +chr15 73843338 73843338 A T het 217.60 219 37.09 0.99 +chr15 74003556 74003556 C G unknown 66.60 130 25.62 1.09 +chr15 74290630 74290630 - GTA het 689.57 51 23.58 13.52 +chr15 74325182 74325182 A G hom 826.30 26 32.31 31.78 +chr15 74425761 74425761 G A unknown 86.11 41 23.07 2.46 +chr15 74425781 74425781 C G unknown 68.50 22 21.18 5.27 +chr15 74467268 74467268 C T unknown 41.58 75 29.91 2.77 +chr15 74494531 74494531 A G unknown 31.32 87 28.40 0.47 +chr15 74513563 74513563 T G unknown 43.66 71 20.03 0.77 +chr15 74924876 74924876 A T het 284.58 73 23.27 3.90 +chr15 75013453 75013453 A G het 113.55 173 34.84 1.20 +chr15 75047038 75047038 C A unknown 69.29 83 28.04 1.57 +chr15 75047426 75047426 C T hom 1554.56 81 26.99 19.19 +chr15 75092694 75092694 A C het 34.21 28 27.07 1.22 +chr15 75115844 75115844 T G het 205.12 125 32.98 1.64 +chr15 75134483 75134483 C T het 697.58 208 35.61 3.35 +chr15 75188688 75188688 A G het 59.95 56 29.42 1.28 +chr15 75189930 75189930 A G het 4363.01 170 34.67 25.66 +chr15 75508276 75508276 A G unknown 44.01 13 17.35 4.89 +chr15 75652070 75652070 G C het 154.63 68 32.00 2.27 +chr15 75654298 75654298 A G het 157 196 33.14 1.04 +chr15 75702226 75702226 T A unknown 41.17 171 32.49 0.30 +chr15 75974954 75974954 A T het 30.24 81 15.20 0.50 +chr15 76031392 76031392 A T het 72.20 88 21.27 1.02 +chr15 76462286 76462286 A G het 790.58 137 35.65 5.77 +chr15 76696926 76696926 G T unknown 152.99 340 33.20 1.96 +chr15 77059493 77059493 T G hom 175.84 42 20.45 4.51 +chr15 77087596 77087596 A T het 293.02 107 21.90 2.74 +chr15 77310726 77310726 T G het 99.21 26 30.15 16.53 +chr15 78189084 78189084 T C unknown 61.39 60 9.91 1.86 +chr15 78190749 78190749 G T unknown 67.02 127 19.67 0.67 +chr15 78196646 78196646 C T unknown 40.97 80 27.14 0.63 +chr15 78208723 78208723 A G het 40 65 26.84 3.08 +chr15 78278351 78278351 C T hom 245.44 30 17.87 11.69 +chr15 78290654 78290654 G C het 95.85 169 11.51 0.77 +chr15 78461321 78461321 T G het 48.17 172 29.77 0.41 +chr15 78558509 78558509 G A hom 5120.01 134 38.42 38.21 +chr15 78585025 78585025 A T het 222.12 105 35.41 2.12 +chr15 78675487 78675487 T - het 312.01 67 22.75 5.57 +chr15 78764285 78764285 A G unknown 635.79 82 31.07 10.78 +chr15 78777312 78777312 G A hom 1726.06 61 29.63 28.30 +chr15 78838837 78838837 C A unknown 158.60 44 36.01 8.35 +chr15 78923378 78923378 G C het 155.85 44 24.78 3.54 +chr15 79183263 79183263 T A unknown 107.25 51 33.56 2.82 +chr15 79231478 79231478 T C unknown 574.87 112 33.68 7.28 +chr15 79277150 79277150 A C het 47.56 37 32.45 1.29 +chr15 79750127 79750127 A G het 532.55 159 36.07 8.32 +chr15 80472463 80472463 C T unknown 65.71 34 24.88 2.74 +chr15 80472611 80472611 C T hom 380.31 41 23.94 12.27 +chr15 80762527 80762527 C - het 725.68 49 30.94 14.81 +chr15 80806183 80806183 T C het 1170.08 68 38.66 18.57 +chr15 80867208 80867208 A - het 314.91 36 30.83 11.25 +chr15 80883836 80883836 G C unknown 51.57 84 29.86 1.20 +chr15 81224273 81224273 G T het 219.41 190 30.36 1.15 +chr15 81598691 81598691 C A het 178.93 111 21.86 2.08 +chr15 81624846 81624846 A C het 58.38 94 29.05 1.42 +chr15 82530630 82530630 A G hom 217.70 84 12.76 2.59 +chr15 83238990 83238990 A T hom 30.77 4 29.83 15.39 +chr15 83333553 83333553 A T unknown 35.65 80 26.93 0.96 +chr15 83350243 83350243 G T unknown 136.60 110 30.27 2.91 +chr15 83519927 83519927 G A unknown 127.93 56 29.35 3.12 +chr15 83544175 83544175 A C het 69.87 165 22.91 0.57 +chr15 83674356 83674356 T A het 142.83 208 23.29 0.69 +chr15 84488410 84488410 A T unknown 35.01 6 17.46 8.75 +chr15 84554018 84554018 G C hom 804.46 28 33.61 28.73 +chr15 84639288 84639288 G A unknown 37.02 222 33.45 0.84 +chr15 84722521 84722521 A G het 250.67 124 21.21 3.53 +chr15 85147681 85147681 C A unknown 50.45 18 22.47 4.20 +chr15 85196849 85196849 G A het 390.59 135 36.98 2.89 +chr15 85333978 85333978 T G het 936.58 200 35.78 4.68 +chr15 85399449 85399449 T C het 58.27 12 26.89 6.47 +chr15 86205729 86205729 A T het 56.82 131 29.88 0.65 +chr15 86205730 86205730 A T het 74.55 131 30.06 0.84 +chr15 86207702 86207702 A T het 46.97 122 33.35 0.56 +chr15 86279451 86279451 C G unknown 80.67 20 16.70 5.04 +chr15 86416357 86416357 G A unknown 43.32 7 25.01 7.22 +chr15 89002955 89002955 A G het 397.63 125 31.07 3.18 +chr15 89079672 89079672 T C het 219.58 47 28.83 4.67 +chr15 89155013 89155013 G A het 205.99 25 31.86 8.24 +chr15 89398605 89398605 G T het 3175.78 161 32.87 19.73 +chr15 89415247 89415247 C G het 2969.78 185 32.17 16.05 +chr15 89659467 89659467 C G unknown 292.01 41 31.38 11.68 +chr15 89862189 89862189 G A het 209.02 100 27.91 2.09 +chr15 89865976 89865976 A T het 152.95 203 30.76 0.99 +chr15 89867400 89867400 G T het 112.93 87 23.09 1.30 +chr15 90144894 90144894 T C het 1082.55 193 35.56 10.12 +chr15 90144944 90144944 G A het 1286.55 178 38.80 13.00 +chr15 90192905 90192905 T C het 446.55 85 37.25 14.89 +chr15 90252251 90252251 T C het 34.28 18 27.69 2.64 +chr15 90258144 90258144 C G het 261.99 126 38.39 9.03 +chr15 90335788 90335788 C T unknown 1011.60 98 34.87 15.33 +chr15 90340979 90340979 T C het 36.83 137 36.27 0.36 +chr15 90453878 90453878 A T het 346.73 54 23.08 6.42 +chr15 90623033 90623033 A T het 33.97 98 33.15 0.74 +chr15 90784845 90784845 C G het 109.70 62 31.31 1.77 +chr15 90794102 90794102 G A het 1305.79 233 34.77 8.21 +chr15 90818827 90818827 G A het 90.79 102 26.30 1.23 +chr15 91448909 91448909 A C het 303.58 93 25.84 3.26 +chr15 91490931 91490931 G C hom 98.14 18 18.12 6.54 +chr15 91519952 91519952 A C unknown 51.15 130 32.24 0.95 +chr15 91523480 91523480 A C het 345.61 146 34.13 2.37 +chr15 91523713 91523713 C G unknown 315.58 75 29.50 7.01 +chr15 91575297 91575297 T C het 342.62 48 18.40 9.79 +chr15 93542000 93542000 C G hom 555.34 22 31.25 25.24 +chr15 93595633 93595633 A C het 50.34 51 30.47 1.32 +chr15 96985546 96985546 G C unknown 50.36 48 27.95 3.15 +chr15 98811241 98811241 T C het 71.68 21 21.55 3.41 +chr15 99511873 99511873 G A unknown 1907.79 185 32.98 13.07 +chr15 99696410 99696410 C T het 30.10 187 34.43 0.65 +chr15 100252738 100252738 A G het 44.22 79 21.06 0.56 +chr15 100821568 100821568 A C unknown 109.59 55 26.03 3.91 +chr15 101109818 101109818 G A het 309.99 158 34.86 7.95 +chr15 101432883 101432883 T A het 524.58 115 31.25 4.56 +chr15 101569467 101569467 T C hom 1376.90 51 29.60 27.00 +chr15 101606570 101606570 T C het 124.27 12 28.34 12.43 +chr15 101609098 101609098 G T het 32.46 15 30.65 5.41 +chr15 101972366 101972366 T A het 54.64 155 32.99 0.35 +chr15 102303362 102303362 A C het 836.58 386 13.23 2.17 +chr15 102304584 102304584 A C unknown 97.12 341 10.06 0.39 +chr15 102369183 102369183 A G unknown 94.55 275 20.71 0.67 +chr16 67513 67513 G T het 30.13 122 11.00 0.58 +chr16 240122 240122 C T het 64.41 43 31.61 1.50 +chr16 321055 321055 T G unknown 40.27 45 25.89 1.09 +chr16 336363 336363 T G het 43.62 41 20.32 1.41 +chr16 396707 396707 T C het 214.04 102 31.94 2.93 +chr16 419304 419304 C T het 243.61 52 22.91 4.68 +chr16 422544 422544 - G unknown 531.75 117 30.36 6.18 +chr16 449659 449659 G A unknown 343.99 177 34.61 8.82 +chr16 450460 450460 C T unknown 36.27 32 18.63 1.34 +chr16 570673 570673 G A unknown 1317.79 130 33.15 13.73 +chr16 718538 718538 G C unknown 38.13 31 30.77 5.45 +chr16 766936 766936 C T het 32.66 34 19.74 3.63 +chr16 845249 845249 C G unknown 40.31 27 28.21 1.75 +chr16 904773 904773 C A unknown 105.02 28 22.20 4.38 +chr16 961054 961054 C T hom 1387.56 137 33.24 14.45 +chr16 1004743 1004743 C T het 1553.76 63 29.75 24.66 +chr16 1129912 1129912 A G hom 58.31 20 18.82 3.64 +chr16 1275135 1275135 T C hom 393.93 16 28.22 24.62 +chr16 1370309 1370309 C G hom 2897.98 124 25.57 23.37 +chr16 1374645 1374645 C A het 32.43 75 26.58 0.81 +chr16 1374818 1374818 A G hom 3786.01 102 39.51 37.12 +chr16 1392257 1392257 C T het 38.56 75 30.32 0.66 +chr16 1444278 1444278 G T het 110.78 50 31.18 4.82 +chr16 1445852 1445852 A T het 210.99 80 30.94 2.64 +chr16 1449451 1449451 A G het 32.38 19 29.95 2.02 +chr16 1486926 1486926 C G het 122.65 35 30.31 7.21 +chr16 1498520 1498520 A G het 230.29 31 32.66 7.43 +chr16 1536330 1536330 C G hom 33.67 27 16.74 2.40 +chr16 1552551 1552551 T C het 44.76 41 25.29 1.09 +chr16 1552769 1552769 T A het 225.76 79 28.73 2.86 +chr16 1706321 1706321 A T het 79.20 57 35.48 1.39 +chr16 1706435 1706435 C T het 401.58 43 30.18 9.34 +chr16 1816393 1816393 T G het 38.04 42 21.17 1.41 +chr16 1817736 1817736 G T het 32.31 41 27.94 1.47 +chr16 1837900 1837900 T C hom 206.02 16 19.69 18.73 +chr16 1872290 1872290 G A unknown 36.01 41 22.29 1.38 +chr16 1894965 1894965 C A het 42.46 56 28.61 2.36 +chr16 1927265 1927265 C T het 1343.58 130 36.63 10.34 +chr16 2030401 2030401 G C unknown 33.26 19 29.73 3.02 +chr16 2051656 2051656 C T het 273.83 68 30.73 5.17 +chr16 2052267 2052267 G T het 150.76 69 27.10 2.18 +chr16 2052674 2052674 C G het 251.58 84 28.57 3.00 +chr16 2087565 2087565 C T unknown 59.01 184 35.39 1.23 +chr16 2130409 2130409 T A het 45.34 36 27.03 1.74 +chr16 2136356 2136356 T C unknown 46.56 72 36.58 1.37 +chr16 2150030 2150030 T G hom 42.27 37 14.75 1.46 +chr16 2259665 2259665 G A het 36.99 146 28.60 1.09 +chr16 2284515 2284515 C A hom 70.65 18 26.43 6.42 +chr16 2326702 2326702 C A het 41.96 98 30.23 0.54 +chr16 2817251 2817251 A G het 193.24 147 29.64 1.74 +chr16 3018048 3018048 C G hom 49.30 14 16.47 4.48 +chr16 3021164 3021164 C G unknown 38.05 58 28.40 1.03 +chr16 3064092 3064092 C T het 69.62 75 22.76 0.93 +chr16 3142164 3142164 G C unknown 56.55 92 28.04 1.13 +chr16 3254247 3254247 A T unknown 52 53 32.17 4.00 +chr16 3364888 3364888 T G het 31.96 30 22.76 1.68 +chr16 3433591 3433591 T A unknown 125.59 175 35.60 1.50 +chr16 3434966 3434966 T C hom 1595.56 141 37.38 16.28 +chr16 3613944 3613944 A G het 196.63 92 30.84 2.14 +chr16 3843387 3843387 C G unknown 61.52 160 32.02 0.68 +chr16 4043574 4043574 G T unknown 91.78 66 27.83 2.35 +chr16 4073152 4073152 A G unknown 42.01 5 21.75 10.50 +chr16 4163598 4163598 A T het 79.37 82 32.91 3.45 +chr16 4256705 4256705 G A het 49 58 27.86 4.45 +chr16 4410206 4410206 A C unknown 76.80 95 27.99 1.11 +chr16 4412547 4412547 G T het 76.97 49 27.15 1.57 +chr16 4484447 4484447 G T het 284.80 165 29.35 1.95 +chr16 4700475 4700475 C T het 247.72 127 30.13 2.82 +chr16 4729989 4729989 C G unknown 53.66 33 22.04 1.92 +chr16 4776828 4776828 T C unknown 52.97 105 32.77 0.98 +chr16 4810598 4810598 A C het 366.58 100 32.53 3.67 +chr16 4833688 4833688 T C het 112.79 72 32.10 2.05 +chr16 4862218 4862218 T C het 97.41 89 24.37 1.09 +chr16 4927513 4927513 T G het 40.09 54 21.19 0.93 +chr16 4944518 4944518 C G hom 2102.99 81 31.85 25.96 +chr16 5121780 5121780 T C unknown 78.91 16 28.60 7.17 +chr16 5339135 5339135 A G unknown 231.23 39 21.70 7.01 +chr16 7726691 7726691 A G hom 2481.98 68 36.71 36.50 +chr16 7759164 7759164 T C unknown 42.18 30 12.60 1.76 +chr16 7760819 7760819 T C het 289.55 43 23.77 6.73 +chr16 8057594 8057594 G T unknown 39.01 9 15.52 13.00 +chr16 8736028 8736028 T C hom 2664.98 100 36.91 26.65 +chr16 8738579 8738579 A G hom 881.30 41 26.27 21.50 +chr16 9002291 9002291 A C het 78.99 131 27.10 0.96 +chr16 9030444 9030444 C G hom 5351.01 196 34.58 27.30 +chr16 9927947 9927947 T C het 1250.58 223 36.49 5.61 +chr16 9934931 9934931 C G het 39.85 162 33.76 0.62 +chr16 9943853 9943853 C A unknown 64.20 47 21.12 2.79 +chr16 9984752 9984752 G T het 35.90 76 20.25 0.68 +chr16 10205470 10205471 AT - het 302.54 38 23.94 7.96 +chr16 10721430 10721430 A C het 47.61 73 28.89 0.85 +chr16 10841096 10841096 A G het 79.33 194 14.77 0.57 +chr16 10851781 10851781 T A het 55.81 128 29.58 0.58 +chr16 10855376 10855376 T - het 334.09 54 20.29 6.19 +chr16 11118874 11118874 C G het 220.60 66 19.26 3.34 +chr16 11375150 11375150 C A het 130.88 63 27.18 2.73 +chr16 11484385 11484385 G T hom 33.01 15 13.38 3.30 +chr16 11769928 11769928 G C het 34.14 46 28.88 1.07 +chr16 11868212 11868212 T C het 45.14 124 36.34 0.82 +chr16 11945324 11945324 C T unknown 180.26 62 21.13 3.76 +chr16 11945341 11945341 G T unknown 69.98 74 28.23 1.15 +chr16 12183818 12183818 T A het 59.12 32 27.37 2.57 +chr16 13297195 13297195 A G unknown 70.64 122 31.38 1.20 +chr16 14016232 14016232 C G unknown 82.17 181 11.94 0.62 +chr16 14693842 14693842 G A het 51.55 140 22.67 0.49 +chr16 15204397 15204397 T A unknown 30.77 85 8.84 0.79 +chr16 15728536 15728536 A G het 222.12 94 31.72 2.36 +chr16 15771601 15771601 T C hom 1587.72 73 31.54 21.75 +chr16 15880339 15880339 A T het 84.07 102 27.72 1.14 +chr16 16162068 16162068 A G unknown 58.04 201 39.56 1.10 +chr16 16219787 16219787 C T het 218.95 84 33.51 3.27 +chr16 16418883 16418883 A T unknown 41.23 17 12.68 3.17 +chr16 17232084 17232087 ATTA - hom 1075.39 24 26.71 44.81 +chr16 18531854 18531854 T C unknown 59.26 44 27.99 2.58 +chr16 18562907 18562907 G C het 48.99 44 22.49 1.11 +chr16 19278384 19278384 C T het 65.01 80 29.32 1.51 +chr16 19559245 19559245 T A het 118.55 260 30.18 0.74 +chr16 20043467 20043467 G A unknown 66.85 143 32.98 0.88 +chr16 20376931 20376931 T G het 114.61 122 31.10 0.94 +chr16 20856547 20856547 A G unknown 74.58 81 30.05 2.13 +chr16 21008557 21008557 T C het 231.63 56 23.03 4.14 +chr16 21086855 21086855 G T het 94.60 299 33.76 0.64 +chr16 21092987 21092987 A C het 2004.58 263 29.27 7.62 +chr16 21161669 21161669 T A hom 36.92 45 26.78 1.76 +chr16 21279144 21279144 G A het 256.99 49 42.72 14.28 +chr16 21414723 21414723 G A het 45.75 320 19.66 0.30 +chr16 21848681 21848681 G A het 296.58 272 16.85 1.09 +chr16 21848736 21848736 A G het 66.74 289 7.35 0.23 +chr16 22163869 22163869 A G het 592.58 205 36.57 2.89 +chr16 22167251 22167251 C T unknown 46.15 126 36.04 0.73 +chr16 22284854 22284854 A G het 182.80 116 35.10 2.20 +chr16 22325011 22325011 T G het 30.23 105 34.42 0.39 +chr16 22335881 22335881 A G het 89.17 153 36.55 0.58 +chr16 22343518 22343518 T G het 103.82 114 36.50 1.28 +chr16 22376329 22376329 T C het 208.80 126 34.30 2.27 +chr16 22543704 22543704 G A het 219.23 184 16.70 1.55 +chr16 22546169 22546169 C G het 447.59 456 23.83 0.98 +chr16 23079794 23079794 A G het 126.79 156 30.52 1.10 +chr16 23099108 23099108 G T het 162.22 49 27.31 4.77 +chr16 23505774 23505774 A C hom 30.26 27 15.68 4.32 +chr16 23596669 23596669 C A het 124.51 78 34.06 2.49 +chr16 23625484 23625484 T G het 107.25 18 24.96 6.31 +chr16 23701321 23701321 C A het 129.87 94 17.32 1.69 +chr16 23703491 23703491 C G het 63.45 111 24.57 0.57 +chr16 24124150 24124159 AAAACAAACC - hom 2186.21 50 20.77 43.72 +chr16 24135389 24135389 C T het 205.62 82 19.62 2.51 +chr16 24185857 24185857 T A het 45.68 83 38.07 1.06 +chr16 24573451 24573451 G T unknown 79.29 176 36.00 3.78 +chr16 24574966 24574966 G T het 31.63 80 29.53 0.61 +chr16 24583406 24583406 A G het 2405.54 123 29.23 19.56 +chr16 24804761 24804761 T G het 64.52 115 37.52 1.09 +chr16 25151398 25151398 - CT het 169.03 51 33.94 12.07 +chr16 25522758 25522758 C T unknown 159.27 6 34.18 26.54 +chr16 27221499 27221499 T G unknown 43.37 97 28.27 1.14 +chr16 27224887 27224887 C T het 104.61 112 28.26 0.93 +chr16 27374207 27374207 G A unknown 64.01 176 26.59 1.42 +chr16 27472843 27472843 C A het 357.75 114 29.01 3.14 +chr16 27473781 27473781 C T unknown 68.32 36 17.45 3.11 +chr16 27549571 27549571 T C het 783.58 150 28.41 5.22 +chr16 27561126 27561126 T G het 87.82 45 30.62 3.38 +chr16 28137310 28137310 C G unknown 31.26 5 25.33 7.81 +chr16 28507999 28507999 T A unknown 62.79 24 25.23 3.14 +chr16 28509466 28509466 G T het 87.73 69 25.69 1.57 +chr16 28619911 28619911 T C hom 71.03 60 12.82 1.27 +chr16 28890488 28890488 C T het 85.62 69 21.73 1.24 +chr16 28912332 28912332 T C het 77.29 37 22.39 2.67 +chr16 28943812 28943812 G A het 466.58 100 30.88 4.67 +chr16 28947970 28947970 C T het 78.04 28 18.30 3.12 +chr16 28989361 28989361 G A unknown 33.99 181 32.04 0.85 +chr16 28989473 28989473 T G het 217.05 115 25.17 2.47 +chr16 29644794 29644794 A G unknown 69.24 104 9.36 1.00 +chr16 29847959 29847959 G C het 110.44 78 24.76 1.81 +chr16 29876123 29876123 T A het 48.55 105 31.92 1.06 +chr16 29916128 29916128 T C het 110.19 57 32.04 2.83 +chr16 29982961 29982961 C T het 698.58 92 27.69 7.59 +chr16 29989691 29989691 T A het 1157.58 270 36.60 4.29 +chr16 29990767 29990767 A G unknown 57.64 35 37.69 3.20 +chr16 29995099 29995099 T G het 32.91 70 33.64 0.84 +chr16 30128845 30128845 A T het 67.17 43 25.48 1.92 +chr16 30408765 30408765 C T het 2127.58 186 35.74 11.44 +chr16 30409241 30409241 A G unknown 99.99 122 31.60 3.12 +chr16 30419589 30419589 C T het 158.85 102 26.01 1.99 +chr16 30484134 30484134 C A het 172.66 50 26.72 3.45 +chr16 30495657 30495657 T C unknown 301.79 64 27.68 5.80 +chr16 30531270 30531270 T A het 723.58 176 32.29 4.11 +chr16 30567112 30567112 C A hom 48.03 26 16.49 2.18 +chr16 30715264 30715264 A T het 38.91 40 27.59 0.97 +chr16 30734132 30734132 G A unknown 114.68 102 31.38 2.21 +chr16 30779520 30779520 G A unknown 40.09 144 26.76 1.05 +chr16 30780994 30780994 C T het 47.04 4 35.19 11.76 +chr16 30795787 30795787 G A unknown 49.98 44 24.38 1.47 +chr16 30833425 30833425 G C hom 86.76 12 17.81 14.46 +chr16 30899249 30899249 G T unknown 136.56 172 31.95 1.48 +chr16 30900325 30900325 C A het 41.58 107 30.64 0.88 +chr16 30939873 30939873 T G unknown 64.01 37 18.91 2.00 +chr16 30997972 30997972 C A het 121.83 79 31.25 2.00 +chr16 31049305 31049305 C G het 244.80 189 38.07 1.88 +chr16 31090920 31090920 C T unknown 56.25 229 34.01 0.45 +chr16 31097476 31097476 A T het 36.48 77 27.72 0.47 +chr16 31098895 31098895 C G het 117.73 55 27.01 2.87 +chr16 31142271 31142271 A G het 43.27 14 27.76 4.33 +chr16 31341457 31341457 T A unknown 212.79 151 31.91 1.85 +chr16 31384679 31384679 G T het 42.15 111 28.81 1.62 +chr16 31424569 31424569 T G het 71.23 117 31.97 1.00 +chr16 31427530 31427530 G T unknown 42.10 28 30.00 3.01 +chr16 31499034 31499034 T G unknown 58.91 40 31.79 3.27 +chr16 32447422 32447422 A T het 88 156 15.24 0.79 +chr16 32486821 32486821 T G het 55.09 28 19.96 3.67 +chr16 32489447 32489447 G A hom 205.09 180 8.95 1.41 +chr16 32489635 32489635 G A het 35.31 58 9.33 0.75 +chr16 33391365 33391365 G A het 32.43 52 18.60 0.90 +chr16 33414143 33414143 C T het 139.60 129 14.25 1.08 +chr16 33500162 33500162 T A unknown 47.90 97 16.45 0.67 +chr16 33524774 33524774 G A het 102.96 158 9.83 0.84 +chr16 33736611 33736611 T G unknown 79.95 27 21.89 7.99 +chr16 33736737 33736737 C T unknown 129.03 28 18.68 6.79 +chr16 33956725 33956725 T C hom 249.16 20 17.27 14.66 +chr16 33957191 33957191 T C hom 30.40 21 13.21 3.38 +chr16 33957467 33957467 A G hom 68.77 31 16.73 4.05 +chr16 33965591 33965591 A C het 70.70 160 23.87 0.56 +chr16 34441739 34441739 T C het 33.05 42 31.15 4.13 +chr16 34442677 34442677 T C unknown 41.01 9 16.03 5.86 +chr16 34826283 34826283 G A hom 37.77 8 21.22 9.44 +chr16 35142630 35142630 C T unknown 31.96 83 25.27 0.80 +chr16 46642286 46642286 G A unknown 131.07 54 34.30 6.24 +chr16 46843487 46843487 A C het 603.58 167 30.53 3.61 +chr16 47699912 47699912 C A het 187.58 114 34.79 1.65 +chr16 48155779 48155779 A G het 426.58 144 34.01 2.96 +chr16 48174559 48174559 G A het 1340.79 147 38.23 12.65 +chr16 48249999 48249999 A T het 803.58 240 34.81 3.35 +chr16 48311248 48311248 G C het 70.99 153 39.73 1.73 +chr16 48382130 48382130 T G het 115.84 242 33.07 0.57 +chr16 49552157 49552157 T A unknown 38.35 25 28.08 3.20 +chr16 49552356 49552356 T G het 75.29 18 23.56 4.43 +chr16 49670535 49670535 T A het 44.87 54 26.59 1.18 +chr16 49764948 49764948 C T unknown 361.99 139 37.12 10.06 +chr16 50344561 50344561 G T het 32.65 63 31.59 0.80 +chr16 50348409 50348409 A T hom 932.65 50 28.71 18.65 +chr16 51174646 51174646 A T het 592.58 156 25.07 3.80 +chr16 51383815 51383815 A G hom 151.14 9 25.78 25.19 +chr16 52479771 52479771 A T unknown 515.79 103 35.28 8.19 +chr16 52689148 52689148 G A het 291.61 50 17.90 5.83 +chr16 53289788 53289788 C T het 223.76 133 34.83 1.68 +chr16 53321913 53321913 A T unknown 37.06 150 22.48 0.81 +chr16 53532552 53532552 T C het 162.59 67 30.68 2.43 +chr16 53720317 53720317 T C het 70.18 58 34.20 1.30 +chr16 53878255 53878255 A T het 113.81 75 27.79 1.52 +chr16 54318102 54318102 C T hom 877.47 46 29.53 19.08 +chr16 54967609 54967609 G T het 119.67 77 28.33 1.55 +chr16 55363238 55363238 G A unknown 334.79 95 31.52 4.72 +chr16 55562257 55562257 G A hom 1429.14 55 29.20 25.98 +chr16 55734212 55734212 T C het 217.58 128 34.70 1.70 +chr16 55801202 55801202 C T hom 1812.99 131 22.84 13.84 +chr16 55854455 55854455 A C het 36 77 15.70 0.61 +chr16 55862691 55862691 G A het 304.58 173 16.06 1.76 +chr16 56362725 56362725 T C hom 2709.28 87 34.16 31.14 +chr16 56396505 56396505 A T het 32.78 104 28.28 0.40 +chr16 56403260 56403260 A T unknown 35.63 84 40.38 0.85 +chr16 56435672 56435672 T A het 868.58 205 37.39 4.24 +chr16 56501238 56501238 A C unknown 49.25 170 31.60 1.17 +chr16 56597350 56597350 G A het 64.03 10 19.31 10.67 +chr16 56623872 56623872 T G het 160.11 53 22.87 3.56 +chr16 56670755 56670755 C T het 124.46 201 14.53 0.82 +chr16 56704753 56704753 G A het 85.01 96 21.66 1.77 +chr16 56711010 56711010 C A het 31.97 93 18.33 0.42 +chr16 56832364 56832364 G A het 33.59 55 16.44 0.61 +chr16 56899006 56899006 C T unknown 80.98 5 27.39 26.99 +chr16 57046956 57046956 G A het 35.35 10 31.96 5.05 +chr16 57071232 57071232 C G het 488.86 51 21.57 9.59 +chr16 57074484 57074484 G C hom 125.82 40 19.47 4.06 +chr16 57080502 57080502 C A het 30.65 151 34.40 0.41 +chr16 57113014 57113014 C G het 30.06 89 28.88 0.75 +chr16 57149318 57149318 G A het 815.79 99 33.55 11.33 +chr16 57261298 57261298 T C het 81 68 25.09 1.69 +chr16 57466286 57466286 A C het 303.63 72 30.10 4.22 +chr16 57466432 57466432 G T het 133.51 130 21.13 1.03 +chr16 57609399 57609399 A G het 79.02 76 30.59 1.04 +chr16 57625628 57625628 A C het 169.57 95 35.23 3.46 +chr16 57688006 57688006 A C het 33.64 82 32.20 0.89 +chr16 57764794 57764794 G C unknown 30.71 120 32.42 0.54 +chr16 57795394 57795394 G A het 2619.59 115 36.06 22.78 +chr16 58018255 58018255 C A unknown 42.55 126 27.17 0.79 +chr16 58019578 58019578 C A het 120.83 32 35.41 5.49 +chr16 58030819 58030819 A C het 31.51 21 28.46 1.50 +chr16 58072111 58072111 G C unknown 70.14 103 29.76 1.23 +chr16 58126160 58126160 C G unknown 287.63 39 30.04 8.46 +chr16 58426420 58426420 T C unknown 83.20 67 32.02 6.40 +chr16 58538300 58538300 C G unknown 195.40 175 34.61 1.43 +chr16 58713798 58713798 G A unknown 733.88 57 35.18 15.61 +chr16 58757683 58757683 A G het 138.72 247 26.27 1.49 +chr16 66196015 66196015 T C unknown 43.25 12 21.58 10.81 +chr16 66546029 66546029 C T unknown 101.99 81 28.84 4.64 +chr16 66670523 66670523 T A hom 234.29 64 20.39 3.66 +chr16 66847511 66847511 A G unknown 48.99 145 36.42 3.77 +chr16 66951533 66951533 T C unknown 35.29 48 30.09 1.18 +chr16 66969480 66969480 A G unknown 92.58 68 24.38 1.75 +chr16 66976061 66976061 T A het 36.35 92 25.65 0.50 +chr16 67034867 67034867 C G unknown 66.73 23 29.30 3.51 +chr16 67173815 67173815 T G het 607.58 91 26.86 6.68 +chr16 67198740 67198740 C G hom 52 10 18.30 10.40 +chr16 67227299 67227299 G C unknown 189.24 133 35.90 1.79 +chr16 67234650 67234650 G C hom 69.25 35 23.04 2.77 +chr16 67234741 67234741 A G het 150.25 62 26.87 2.42 +chr16 67261674 67261674 C G het 205.58 64 25.53 3.21 +chr16 67299903 67299903 G C het 291.79 54 24.33 5.40 +chr16 67304915 67304915 A G het 97.99 193 36.37 2.28 +chr16 67429045 67429045 T C het 65 49 28.46 1.63 +chr16 67469529 67469529 A T het 61.32 27 27.56 2.27 +chr16 67573543 67573543 G C het 296.58 156 31.74 1.90 +chr16 67574129 67574129 A G het 69.56 68 29.72 2.24 +chr16 67579659 67579659 C T het 48.99 89 26.46 2.72 +chr16 67579879 67579879 G C het 86.56 151 25.97 1.19 +chr16 67806014 67806014 C - unknown 194.44 105 19.48 2.37 +chr16 67914794 67914794 T C unknown 33.47 160 28.03 0.44 +chr16 67979423 67979423 G T unknown 120.99 134 36.12 5.26 +chr16 68012112 68012112 G T unknown 190.60 129 31.76 3.18 +chr16 68108088 68108088 C G het 139.04 83 33.01 2.32 +chr16 68109421 68109421 T C het 72.94 57 32.80 1.74 +chr16 68224853 68224853 T A het 133.23 174 37.25 1.03 +chr16 68243569 68243569 A C het 38.75 55 26.32 1.17 +chr16 68384112 68384112 T A het 375.83 291 30.13 1.69 +chr16 68712163 68712163 C T het 145.87 171 32.83 1.76 +chr16 68732049 68732049 A C hom 141.66 17 18.74 11.80 +chr16 69355102 69355102 A G hom 251.13 38 29.00 6.61 +chr16 69373059 69373059 T A het 60.18 83 30.45 0.97 +chr16 69400604 69400604 G C het 58.44 49 34.11 1.67 +chr16 69726498 69726498 C G het 456.60 75 28.69 6.09 +chr16 69791434 69791434 A G unknown 35.64 89 16.25 1.43 +chr16 69905739 69905739 C A het 107.22 206 33.02 0.76 +chr16 70016697 70016697 G A unknown 50.87 118 9.74 0.61 +chr16 70029924 70029924 T C unknown 80.07 63 15.49 2.67 +chr16 70045693 70045693 A G unknown 30.34 54 14.81 1.38 +chr16 70154728 70154728 T C het 88.67 32 19.47 2.77 +chr16 70286749 70286749 C A het 45.02 201 36.21 0.98 +chr16 70363188 70363188 T C het 125.99 85 22.57 2.00 +chr16 70389379 70389379 C G unknown 43.99 116 31.62 1.69 +chr16 70428788 70428788 A G unknown 59.01 70 31.13 1.05 +chr16 70432264 70432264 A G het 95.93 107 28.30 1.16 +chr16 70497085 70497085 T G unknown 195.81 210 33.18 1.17 +chr16 70509328 70509328 T C het 63.77 73 31.21 1.33 +chr16 70531754 70531754 T G unknown 1176.79 167 38.07 9.65 +chr16 70546234 70546234 G A unknown 1138.79 98 36.49 15.18 +chr16 70721890 70721890 C A het 37.61 102 37.59 0.78 +chr16 70730930 70730930 G T het 103.11 16 26.98 7.36 +chr16 70894775 70894775 C T unknown 86.42 118 30.75 1.60 +chr16 70908118 70908118 G C het 1400.58 119 36.44 11.77 +chr16 70913332 70913332 A T het 184.58 148 34.04 1.25 +chr16 70926212 70926212 G A unknown 32.95 128 30.79 0.49 +chr16 70973035 70973035 G A unknown 65.98 13 14.00 13.20 +chr16 70989376 70989376 T A het 149.99 257 33.44 0.83 +chr16 71008389 71008389 A C het 1906.58 191 36.56 9.98 +chr16 71127585 71127585 G A het 58.87 36 32.51 2.56 +chr16 71196410 71196410 G A het 1113.58 100 38.13 11.14 +chr16 71417292 71417292 A C het 110.81 84 32.02 1.70 +chr16 71418690 71418690 T G het 384.58 194 34.60 1.98 +chr16 71674882 71674882 C G het 645.79 123 40.08 7.78 +chr16 71712625 71712625 T G het 279.76 75 30.10 3.73 +chr16 71732328 71732328 T A unknown 36.91 115 20.25 0.70 +chr16 71773190 71773190 G T het 1116.58 134 35.58 8.33 +chr16 71792391 71792391 A C het 117.08 75 26.11 1.95 +chr16 72003800 72003800 T G unknown 61.73 175 35.96 0.45 +chr16 72024295 72024295 A C het 127.03 114 26.07 1.53 +chr16 72045903 72045903 C T unknown 34.59 61 25.03 1.02 +chr16 72090184 72090184 C T unknown 32.34 113 26.88 0.60 +chr16 72146441 72146441 C G het 2616.55 103 30.46 25.40 +chr16 72170409 72170409 G T het 93.79 153 26.89 0.82 +chr16 74444838 74444838 A G unknown 159.84 53 22.90 3.33 +chr16 74499607 74499607 G C het 1218.58 193 28.81 6.31 +chr16 74537591 74537591 C T het 2209.58 204 34.60 10.83 +chr16 74685881 74685881 T A het 424.64 254 34.05 1.67 +chr16 74706551 74706551 G T het 42.42 33 15.94 1.63 +chr16 74877216 74877216 T C unknown 35.31 107 16.32 1.14 +chr16 74923554 74923554 A G het 638.58 83 27.65 7.69 +chr16 75147716 75147716 A T het 33.42 97 34.41 0.40 +chr16 75513265 75513265 C T het 47.43 65 22.92 1.32 +chr16 75575410 75575410 G A het 1957.79 197 42.48 13.32 +chr16 75642592 75642592 G C hom 37.24 9 32.18 7.45 +chr16 77228560 77228560 C T het 72.63 49 24.21 1.48 +chr16 77769803 77769803 C T het 1795.58 260 29.53 6.91 +chr16 77896813 77896813 A G het 144.50 89 28.85 2.04 +chr16 78859207 78859207 G C unknown 52.74 30 26.10 3.52 +chr16 78859709 78859709 G T het 71.34 54 25.16 1.62 +chr16 80332941 80332941 C T unknown 41.55 20 30.25 8.31 +chr16 81095790 81095790 T G het 37.45 110 30.97 0.65 +chr16 81180988 81180988 C G het 5197.01 294 34.77 17.68 +chr16 81183266 81183266 A G hom 2169.99 63 37.80 34.44 +chr16 81213422 81213422 C T het 617.28 48 31.55 12.86 +chr16 81242194 81242194 T C het 2644.54 114 33.27 23.20 +chr16 81301460 81301460 G C het 170.08 54 26.80 12.15 +chr16 81396574 81396574 G C unknown 38.27 4 24.73 19.14 +chr16 82184973 82184973 A G het 107.03 64 30.16 6.69 +chr16 83842794 83842794 A C unknown 93.55 101 35.38 1.83 +chr16 83992973 83992973 A G het 56.58 83 26.65 1.38 +chr16 83999261 83999261 C A het 91.99 104 33.61 5.11 +chr16 84066909 84066909 A G unknown 132.30 118 23.82 1.36 +chr16 84132628 84132628 G C het 35.38 119 32.26 0.67 +chr16 84256501 84256501 G T het 66.05 54 26.85 1.22 +chr16 84492875 84492875 G C het 276.62 143 31.50 3.69 +chr16 84513556 84513556 T C het 77.20 83 33.46 1.12 +chr16 84884072 84884072 T G hom 2980.54 101 37.08 29.51 +chr16 85696655 85696655 T G hom 131.12 36 19.81 3.64 +chr16 85697211 85697211 A G het 166.79 111 27.89 1.50 +chr16 85721048 85721048 T C unknown 30.99 226 35.29 0.60 +chr16 85946798 85946798 G T unknown 37.99 153 30.66 0.90 +chr16 86544749 86544749 C G unknown 187.80 34 23.34 6.06 +chr16 86575721 86575721 C T het 440.58 83 30.71 5.31 +chr16 86588265 86588265 T C unknown 64.85 210 34.91 0.77 +chr16 87446483 87446483 G C het 66.61 104 31.51 0.88 +chr16 87600355 87600355 G A hom 120.14 8 22.95 24.03 +chr16 87678576 87678576 C T unknown 65.05 49 29.66 5.42 +chr16 87742856 87742856 A T het 175.61 85 28.27 2.07 +chr16 88555301 88555301 C A hom 530.88 39 24.76 13.61 +chr16 88643604 88643604 G C het 36.01 101 28.08 0.51 +chr16 88689835 88689835 A G unknown 44.99 95 39.02 1.80 +chr16 88697622 88697622 C A het 106.22 127 32.48 1.15 +chr16 88778167 88778167 T C het 127.90 70 32.97 4.13 +chr16 88781293 88781293 G T het 77.86 39 24.15 2.00 +chr16 88792061 88792061 T G unknown 47.59 83 32.79 1.03 +chr16 89167395 89167395 C T hom 850.80 151 34.79 13.29 +chr16 89187111 89187111 C T het 369.60 109 26.48 3.39 +chr16 89335045 89335045 G A hom 83.76 19 20.35 5.58 +chr16 89599040 89599040 G C het 35.27 79 30.58 0.82 +chr16 89644001 89644001 T C het 85.65 14 34.21 12.24 +chr16 89662967 89662967 G C het 107.13 91 35.58 1.70 +chr16 89764687 89764687 C A het 75.56 148 29.75 0.67 +chr16 89764749 89764749 C A het 173.28 125 29.52 1.79 +chr16 89967181 89967181 G A het 80.83 74 24.68 1.09 +chr16 89975496 89975496 G A het 107.99 116 30.65 5.40 +chr16 89986618 89986618 T C het 177.59 84 28.28 2.11 +chr16 90027492 90027492 C T het 83.76 108 22.37 1.03 +chr17 11802 11802 C T het 84.97 30 22.85 4.25 +chr17 263367 263367 A T unknown 101.17 72 13.62 1.74 +chr17 649505 649505 T A het 1375.79 214 35.47 8.88 +chr17 1375526 1375526 G C unknown 38.17 87 29.63 1.59 +chr17 1377943 1377943 A G hom 751.56 114 33.54 10.59 +chr17 1489297 1489297 A C het 42.58 41 31.09 1.33 +chr17 1542097 1542097 C T het 30.45 39 33.86 1.05 +chr17 1564102 1564102 C A het 54.09 142 34.91 0.71 +chr17 1565373 1565373 C T het 131.83 146 22.02 1.15 +chr17 1578835 1578835 A G het 1362.79 216 39.60 9.21 +chr17 1587828 1587828 G C hom 110.26 33 19.41 3.34 +chr17 1633673 1633673 G A unknown 34.43 66 30.47 1.91 +chr17 1637074 1637074 A G het 666.88 42 27.76 15.88 +chr17 1673104 1673104 G A unknown 720.79 138 35.09 7.00 +chr17 1840701 1840701 C A unknown 54.39 64 23.15 3.63 +chr17 2219038 2219038 C G hom 641.54 50 24.42 13.37 +chr17 2594218 2594218 G A het 177.84 15 25.26 14.82 +chr17 2604006 2604006 G T het 52.48 97 34.81 0.68 +chr17 2604440 2604440 T G het 84.75 78 34.81 2.02 +chr17 2604712 2604712 C T unknown 47.02 78 28.18 2.94 +chr17 2883697 2883697 C A het 33.82 162 30.74 0.43 +chr17 2894656 2894656 G T het 257.65 156 35.94 1.65 +chr17 3119673 3119673 A G het 889.79 266 31.62 4.76 +chr17 3343692 3343692 T A het 115.84 58 27.87 2.23 +chr17 3392521 3392521 G A het 89.44 129 19.64 1.09 +chr17 3417123 3417123 C T hom 1955.98 60 32.20 32.60 +chr17 3475564 3475564 C T unknown 432.43 35 29.36 14.41 +chr17 3526637 3526637 C T het 1742.79 184 39.73 13.01 +chr17 3561316 3561316 G A het 181.59 93 29.33 1.95 +chr17 3564084 3564084 T C het 70.30 43 32.85 1.95 +chr17 3704301 3704301 A T het 333.58 67 25.40 4.98 +chr17 3721741 3721741 C A het 54.16 114 29.91 0.66 +chr17 3831306 3831306 C G het 282.58 98 30.59 2.88 +chr17 3831430 3831430 C T het 237.99 124 32.23 10.82 +chr17 3850713 3850713 A T het 310.79 113 28.11 3.84 +chr17 3850816 3850816 C G het 42.55 103 31.49 0.79 +chr17 4027047 4027047 A G hom 292.44 11 33.63 32.49 +chr17 4046921 4046921 G C het 47.44 57 23.02 1.48 +chr17 4076629 4076629 C A het 144.80 66 33.50 2.90 +chr17 4077159 4077159 G A het 205.59 92 26.95 2.23 +chr17 4495614 4495614 G T het 177.58 80 23.98 2.22 +chr17 4497231 4497231 C A het 171.10 66 26.06 2.59 +chr17 4539330 4539330 T G het 94.48 10 19.34 11.81 +chr17 4622638 4622638 C T het 1281.58 160 32.36 8.01 +chr17 4645013 4645013 G C het 73.81 150 25.99 0.64 +chr17 4711480 4711480 C G het 52.99 115 26.34 0.67 +chr17 4713194 4713194 T A unknown 70.81 155 36.40 0.63 +chr17 4722299 4722299 T C hom 412.42 57 14.98 7.24 +chr17 4794930 4794930 T G unknown 46.83 50 31.49 1.20 +chr17 4805946 4805946 G C unknown 90.01 323 37.66 0.54 +chr17 4856376 4856376 A G hom 986.58 90 28.95 10.96 +chr17 4875626 4875626 G T het 49.56 144 29.82 0.77 +chr17 4903988 4903988 A C unknown 38.35 85 24.48 0.82 +chr17 4937540 4937540 G T unknown 162.22 103 32.09 2.03 +chr17 5036161 5036161 G A het 37.70 214 12.18 0.18 +chr17 5276605 5276605 T A het 67.99 121 40.54 1.84 +chr17 5291277 5291280 AAAT - het 380.95 70 28.29 19.05 +chr17 5359295 5359295 A G het 67.06 27 16.81 5.16 +chr17 6371401 6371401 A C het 72.19 67 24.65 1.50 +chr17 6376069 6376069 G A het 187.60 54 26.13 3.47 +chr17 6441452 6441452 A T het 100.09 62 29.62 1.61 +chr17 6524162 6524162 C G unknown 119.46 186 32.58 2.65 +chr17 6560638 6560638 G T unknown 64.82 59 28.13 2.09 +chr17 6563468 6563468 T C het 132.63 90 21.47 1.47 +chr17 6719328 6719328 G C het 39.41 63 26.99 0.80 +chr17 6802834 6802834 C G hom 160.70 17 29.93 10.71 +chr17 7107274 7107274 A T unknown 34.66 80 31.95 0.96 +chr17 7154599 7154599 C T hom 31.28 11 16.24 7.82 +chr17 7162118 7162118 G A het 236.84 143 35.99 2.28 +chr17 7164123 7164123 A G unknown 181.77 138 23.88 2.84 +chr17 7217257 7217257 C T unknown 84.90 113 22.86 1.04 +chr17 7292380 7292380 C G unknown 47.29 19 22.20 3.64 +chr17 7324273 7324273 T G het 239.25 185 35.15 1.29 +chr17 7329738 7329738 A G het 92.79 69 27.93 1.34 +chr17 7357607 7357607 C T unknown 629.99 183 35.56 14.00 +chr17 7415941 7415941 C A het 993.58 153 31.42 6.49 +chr17 7463495 7463495 C T het 837.58 196 31.94 4.27 +chr17 7478402 7478402 C G unknown 1619.56 114 37.35 21.89 +chr17 7480189 7480189 T A het 164.58 52 24.69 3.17 +chr17 7578115 7578115 T C het 696.94 40 32.52 17.42 +chr17 7681811 7681811 C T hom 52.38 25 17.82 2.10 +chr17 7708227 7708227 C T het 355.58 114 27.77 3.12 +chr17 7760626 7760626 G A het 31.38 55 25.88 0.92 +chr17 7794188 7794188 G T het 31.71 118 25.25 0.35 +chr17 7797035 7797035 G A unknown 41.99 268 32.27 0.69 +chr17 7803443 7803443 T A het 67.90 38 29.24 1.79 +chr17 7810697 7810697 A C het 193.59 81 28.02 2.39 +chr17 7812002 7812002 C G het 218.70 199 29.76 1.29 +chr17 7842959 7842959 G A het 73.97 99 33.89 1.09 +chr17 7907205 7907205 G C unknown 33.15 50 21.63 1.27 +chr17 7910456 7910456 A C unknown 46.55 118 35.54 0.88 +chr17 7983799 7983799 A G het 320.99 132 38.22 12.84 +chr17 7983969 7983969 G C het 375.99 192 34.28 8.17 +chr17 8027458 8027458 C G het 144.76 57 26.66 2.54 +chr17 8051074 8051074 T C het 103 67 30.77 7.92 +chr17 8052791 8052791 C T het 66.51 41 23.56 1.62 +chr17 8076911 8076911 A G hom 1928.07 68 30.38 28.35 +chr17 8076916 8076916 C T het 1267.27 63 32.37 20.12 +chr17 8158273 8158273 A G hom 644.21 34 25.08 18.95 +chr17 8168906 8168906 C A het 575.58 162 32.94 3.55 +chr17 8216865 8216865 G T het 414.58 244 34.15 1.70 +chr17 8221608 8221608 A C unknown 155.95 115 22.29 1.73 +chr17 8396068 8396068 G T het 112.95 106 32.21 1.43 +chr17 8451745 8451745 A - hom 1224.14 76 23.08 16.11 +chr17 8655571 8655571 A T het 76 114 15.64 0.90 +chr17 9605061 9605061 G T unknown 48.48 70 18.13 0.93 +chr17 9737090 9737090 G C het 64 76 23.90 0.97 +chr17 9764531 9764531 A G hom 326.61 107 28.97 4.87 +chr17 9764613 9764613 A G unknown 599.59 64 33.53 14.62 +chr17 9792872 9792872 T C hom 1164.56 91 35.49 17.38 +chr17 9804493 9804493 C T unknown 540.59 56 36.87 15.45 +chr17 10162547 10162547 T C hom 156.14 48 12.87 4.00 +chr17 10205067 10205067 C T hom 2363.01 84 32.81 28.13 +chr17 10219486 10219486 A G unknown 243.26 21 26.86 15.20 +chr17 10250083 10250083 T C het 488.58 361 35.54 1.35 +chr17 10297707 10297707 T C unknown 46.06 126 15.54 1.12 +chr17 10312875 10312875 C T het 88.74 119 12.80 0.75 +chr17 10353942 10353942 G T het 56.68 156 27.72 0.36 +chr17 10358205 10358205 G C unknown 43.09 104 35.33 0.84 +chr17 10364191 10364191 T C het 1079.79 143 30.00 9.91 +chr17 10408331 10408331 C T unknown 51.98 99 14.88 0.74 +chr17 10428439 10428439 C G unknown 79.99 148 37.28 4.71 +chr17 10547722 10547722 A G het 563.58 145 34.10 3.89 +chr17 11583101 11583101 G T het 274.12 127 34.94 2.16 +chr17 11593470 11593470 G C unknown 70.61 115 31.80 1.10 +chr17 11958354 11958354 A T het 110.84 50 29.23 2.31 +chr17 12914929 12914929 A C het 256.79 105 35.13 3.13 +chr17 12919040 12919040 C T het 106.78 158 28.78 0.92 +chr17 14095529 14095529 C G unknown 68.50 112 17.63 3.26 +chr17 15848643 15848643 G T unknown 42.73 12 20.52 7.12 +chr17 15961818 15961818 G C het 714.58 209 34.17 3.42 +chr17 16722955 16722955 G T het 44 122 11.49 0.45 +chr17 16722984 16722984 G A het 425.55 93 25.05 4.58 +chr17 16833741 16833741 A T het 105.83 91 18.30 1.16 +chr17 17041252 17041252 C T het 85.89 110 15.68 0.78 +chr17 17118442 17118442 T C het 790.58 133 30.09 5.94 +chr17 17127217 17127217 A C unknown 39.47 61 27.14 0.81 +chr17 17226412 17226412 G A het 232.59 207 33.47 1.12 +chr17 17714152 17714152 G C het 127.86 122 28.40 1.32 +chr17 17714393 17714393 C G het 49.58 60 27.96 1.34 +chr17 17750907 17750907 G A hom 350 29 24.28 12.07 +chr17 18039834 18039834 C A unknown 44.08 101 29.50 1.92 +chr17 18045397 18045397 T C het 32.98 83 22.33 0.55 +chr17 18059637 18059637 T A unknown 97.58 131 25.63 1.32 +chr17 18060225 18060225 G A het 86.62 57 23.51 1.84 +chr17 18061057 18061057 A G het 455.58 80 30.74 5.69 +chr17 18066425 18066425 G A unknown 116.40 95 28.91 1.55 +chr17 18087902 18087902 G T het 179.84 101 31.63 2.50 +chr17 18141669 18141669 A G het 53.26 54 32.85 1.90 +chr17 18145031 18145031 T C unknown 70.64 54 29.05 2.28 +chr17 18152426 18152426 A C het 65.45 64 26.83 1.23 +chr17 18158141 18158141 A G het 351.58 116 30.44 3.03 +chr17 18167146 18167146 C A het 86.13 69 25.86 1.69 +chr17 18215586 18215586 G C het 66.92 18 31.54 9.56 +chr17 18675778 18675778 A T het 776.58 364 37.24 2.13 +chr17 18883064 18883064 C G het 1137.58 130 30.18 8.75 +chr17 19284946 19284946 C A het 72.79 87 36.70 1.65 +chr17 19288274 19288274 T G hom 62.22 8 18.61 10.37 +chr17 19288856 19288856 G C hom 73.55 29 23.15 2.54 +chr17 19445742 19445742 A G het 42.62 127 31.21 0.58 +chr17 19618318 19618318 G T het 38.85 35 28.69 1.85 +chr17 19658849 19658849 G T hom 45.30 23 20.85 2.83 +chr17 19658853 19658853 A G unknown 53.12 25 21.67 5.90 +chr17 19659438 19659438 T G het 64.79 25 26.00 4.63 +chr17 20353338 20353338 A G het 36.04 28 19.21 1.50 +chr17 20487806 20487806 A T unknown 37.01 32 11.14 1.95 +chr17 20674541 20674541 C A het 54.41 163 15.47 0.33 +chr17 20908326 20908326 T G het 548.70 92 26.82 5.96 +chr17 21075419 21075419 C T het 46.16 66 24.48 1.00 +chr17 21202140 21202140 G T het 62.28 93 31.68 0.89 +chr17 21215682 21215682 G A het 162.33 64 30.14 3.06 +chr17 21217554 21217554 C T het 519.58 171 28.89 3.04 +chr17 21247694 21247694 T C unknown 37.26 4 30.24 18.63 +chr17 21312642 21312642 G T unknown 87.10 19 21.77 5.44 +chr17 21906392 21906392 A G het 80.81 82 12.78 0.99 +chr17 21911551 21911551 C T het 33.61 86 15.31 0.69 +chr17 25309007 25309007 G A unknown 100.88 90 16.09 1.38 +chr17 25601280 25601280 A C het 37.19 103 13.08 0.46 +chr17 25783830 25783830 G A het 50.53 37 17.40 1.80 +chr17 25910103 25910103 A C het 225.58 51 34.61 4.42 +chr17 26495572 26495572 G T het 181.55 400 37.14 1.14 +chr17 26601602 26601602 T A het 40.36 36 25.38 1.44 +chr17 26678882 26678882 T C het 152.29 61 21.15 3.11 +chr17 26687898 26687898 - C hom 1774.65 66 30.04 26.89 +chr17 26692224 26692224 - G het 2143.56 97 29.54 22.10 +chr17 26708303 26708304 GT - het 1556.79 37 31.83 42.08 +chr17 26817409 26817409 C A het 34.01 176 30.66 0.72 +chr17 26874484 26874484 - C het 109.55 39 19.41 2.81 +chr17 26919515 26919515 G T het 181.12 160 27.07 1.13 +chr17 26925515 26925515 A T unknown 78.95 49 26.44 3.04 +chr17 26940018 26940018 A G unknown 41.30 82 26.52 1.18 +chr17 27013468 27013468 C T het 459.79 61 37.12 10.22 +chr17 27018096 27018096 A G unknown 163.39 45 29.82 3.63 +chr17 27064844 27064844 C G het 123.41 114 22.28 1.08 +chr17 27065635 27065635 G C het 266.67 53 27.72 5.03 +chr17 27068604 27068604 T G unknown 124.99 127 33.51 2.02 +chr17 27076438 27076438 A G unknown 46.56 110 30.71 0.74 +chr17 27188296 27188296 A C het 80.47 13 26.39 6.19 +chr17 27424375 27424375 G A unknown 32.16 85 27.91 0.71 +chr17 27869968 27869968 G A hom 285.42 30 33.82 14.27 +chr17 27905954 27905954 C A het 86.48 132 30.83 0.92 +chr17 27908467 27908467 C A het 40.86 28 21.49 1.46 +chr17 28886776 28886776 G A unknown 52.05 158 16.65 1.63 +chr17 29161109 29161109 T A het 39.74 53 22.54 1.32 +chr17 29261188 29261188 T A unknown 56 84 35.34 5.09 +chr17 29377694 29377694 C T het 163.69 119 15.64 1.38 +chr17 29645456 29645456 T C unknown 125.90 90 31.48 1.88 +chr17 29849479 29849479 C T het 52.01 68 24.35 3.06 +chr17 30330261 30330261 T A unknown 73.61 111 16.79 1.02 +chr17 30348605 30348605 T C unknown 47.58 133 24.78 1.40 +chr17 30670991 30670991 G A unknown 83.99 269 20.59 1.24 +chr17 30692396 30692396 G T unknown 192.99 194 35.66 4.71 +chr17 31352930 31352930 C T hom 196.23 49 19.71 4.00 +chr17 32687689 32687689 A G unknown 1404.79 132 33.83 14.63 +chr17 32906089 32906089 G T het 78.12 50 18.47 1.56 +chr17 33454435 33454435 T C het 60.28 114 23.98 0.74 +chr17 33464257 33464257 C G het 40.35 37 32.09 2.37 +chr17 33504465 33504465 C T unknown 42.23 70 29.17 0.80 +chr17 33591678 33591678 G T het 127.65 169 29.23 0.76 +chr17 33849688 33849688 C A het 48.96 99 13.44 0.63 +chr17 34095004 34095004 G C het 950.58 125 30.01 7.60 +chr17 34249482 34249482 T C het 133.66 88 23.65 1.52 +chr17 34431388 34431388 T A het 70.52 109 12.69 0.88 +chr17 34863426 34863426 C A unknown 218.79 86 29.96 3.37 +chr17 34869155 34869155 G A unknown 535.01 62 31.64 11.15 +chr17 34871797 34871797 C T het 174.79 152 26.45 1.65 +chr17 34883924 34883924 G T het 42.99 166 34.40 1.13 +chr17 34953325 34953325 T C het 565.58 122 31.96 4.64 +chr17 34964933 34964933 C G het 58.61 33 25.02 3.45 +chr17 35344116 35344116 T A het 164.15 36 27.23 4.56 +chr17 35608889 35608889 G A het 4279.01 136 38.25 31.46 +chr17 35693085 35693085 T G unknown 44.25 46 11.17 1.92 +chr17 35783416 35783416 A G het 787.58 121 33.15 6.51 +chr17 35836819 35836819 T C het 267.86 38 23.73 7.44 +chr17 36058980 36058980 C T hom 2656.98 75 39.04 35.43 +chr17 36288541 36288541 G A het 50.52 91 19.27 0.75 +chr17 36291943 36291943 C A unknown 32.98 140 24.15 0.44 +chr17 36353761 36353761 C T hom 57.27 184 8.54 0.58 +chr17 36491937 36491937 C A het 110.17 98 22.34 1.12 +chr17 36714614 36714614 C T unknown 77.48 28 20.57 3.87 +chr17 36927239 36927239 T G unknown 97.96 65 30.58 1.85 +chr17 37071366 37071366 C A het 158.82 138 31.34 1.56 +chr17 37101217 37101217 T C het 35.71 76 31.74 0.63 +chr17 37187992 37187992 T G unknown 33.99 124 25.51 1.31 +chr17 37198896 37198896 A T hom 36.06 17 15.17 3.28 +chr17 37288226 37288226 C A het 165.94 114 32.49 1.93 +chr17 37343761 37343761 C G unknown 96.41 165 31.71 0.77 +chr17 37358662 37358662 G C unknown 44.26 109 10.70 0.51 +chr17 37425262 37425262 A C het 132.24 9 27.12 14.69 +chr17 37557588 37557588 G C unknown 69.28 18 19.59 4.95 +chr17 37596589 37596589 T A unknown 59.04 105 29.11 0.72 +chr17 37687201 37687201 A T het 129.61 106 35.13 1.60 +chr17 37778497 37778497 G A het 86.61 73 32.18 1.35 +chr17 37790047 37790047 A C hom 1282.84 96 27.53 13.36 +chr17 37790115 37790115 C G het 67.91 175 31.64 0.56 +chr17 37814083 37814083 T A unknown 40.84 85 26.35 0.66 +chr17 37864773 37864773 T C het 76.71 101 22.85 0.95 +chr17 37881537 37881537 C A het 119.21 146 30.05 1.09 +chr17 38024879 38024879 C G het 63.60 120 32.97 1.12 +chr17 38080314 38080314 A T het 55.30 47 23.49 1.63 +chr17 38121886 38121886 G C het 124.61 62 35.44 2.01 +chr17 38129044 38129044 G A het 276.58 128 25.56 2.16 +chr17 38131299 38131299 C T unknown 31.32 96 30.23 1.16 +chr17 38153525 38153525 C A het 89.65 113 29.49 1.08 +chr17 38186110 38186110 T G het 47.01 118 35.05 0.53 +chr17 38187656 38187656 G T het 52.45 23 22.84 3.09 +chr17 38188419 38188419 C T het 727.58 104 30.46 7.00 +chr17 38192125 38192125 C G het 64.93 34 27.02 2.16 +chr17 38320244 38320244 T A het 156.91 197 29.53 1.11 +chr17 38560838 38560838 T G unknown 40.70 76 28.55 0.77 +chr17 38715121 38715121 G A het 236.60 63 28.02 3.76 +chr17 38953197 38953197 C A het 224.58 120 27.93 1.87 +chr17 39080787 39080787 T A het 64.78 95 35.47 1.22 +chr17 39316653 39316653 C T het 61.82 171 17.60 0.49 +chr17 39340988 39340988 A G het 161.53 142 23.35 1.63 +chr17 39346490 39346490 T A het 48.18 114 30.67 0.57 +chr17 39389058 39389058 G C het 65.83 171 14.73 0.38 +chr17 39421665 39421665 C A het 252.59 228 18.44 1.11 +chr17 39464375 39464375 G T het 573.58 107 30.75 5.36 +chr17 39465155 39465155 G A unknown 35.42 128 23.44 0.51 +chr17 39552793 39552793 T A het 98.77 148 13.69 0.67 +chr17 39553538 39553538 T G unknown 81.78 48 12.16 2.73 +chr17 39594935 39594935 - C unknown 1120.74 124 20.56 9.04 +chr17 39620399 39620399 C T het 1445.58 151 37.70 9.57 +chr17 39620655 39620655 T A het 40.59 93 35.73 0.78 +chr17 39622149 39622149 A G het 271.61 91 25.25 2.98 +chr17 39633214 39633214 G C unknown 31.02 82 23.68 1.72 +chr17 39659913 39659913 G A hom 726.94 201 13.67 3.62 +chr17 39680856 39680856 A C het 600.43 78 21.85 7.70 +chr17 39767005 39767005 C A het 52.98 73 19.41 0.73 +chr17 39881996 39881996 A T unknown 98.47 68 31.32 2.19 +chr17 39959511 39959511 C T het 1628.79 76 32.89 21.43 +chr17 39976042 39976042 A C unknown 229.79 165 37.91 1.81 +chr17 39987161 39987161 G A het 147.32 153 27.08 2.42 +chr17 40025285 40025285 A G hom 6806.01 210 35.47 32.41 +chr17 40063786 40063786 G A unknown 140.79 93 29.32 2.01 +chr17 40141440 40141440 C G het 377.59 279 36.16 1.35 +chr17 40175959 40175959 G A het 113.29 82 31.05 1.38 +chr17 40253714 40253714 C T het 52.10 47 17.79 1.11 +chr17 40267149 40267149 C G het 81.59 62 20.74 1.94 +chr17 40270238 40270238 G C het 307.79 73 29.99 5.40 +chr17 40321734 40321735 CT - het 158.85 36 17.06 4.41 +chr17 40622255 40622255 T A het 48.95 78 33.45 1.69 +chr17 40629813 40629813 T A unknown 56.50 107 33.01 0.66 +chr17 40639138 40639138 A C het 270.19 145 34.17 2.31 +chr17 40714784 40714784 G T het 35.07 53 27.07 0.90 +chr17 40716380 40716380 G A het 59.91 47 19.82 1.27 +chr17 40734081 40734081 A T het 500.58 90 30.19 5.56 +chr17 40811781 40811781 C T het 1238.73 53 33.41 23.37 +chr17 40817582 40817582 T G unknown 91.83 150 16.50 0.79 +chr17 40859916 40859916 C G het 56.95 249 38.47 0.56 +chr17 40864445 40864445 T G unknown 93.01 242 37.27 0.76 +chr17 40912426 40912426 A G het 58.56 189 36.87 0.64 +chr17 40997130 40997130 C G het 76.87 69 35.98 1.11 +chr17 41020880 41020880 C G het 116.92 48 27.03 2.44 +chr17 41133242 41133242 G A hom 141.14 7 27.48 20.16 +chr17 41245237 41245237 A G het 3773.01 341 38.10 11.06 +chr17 41245471 41245471 C T het 1028.79 139 37.54 11.06 +chr17 41345162 41345162 T C het 349.79 285 36.27 1.70 +chr17 41354634 41354634 T C het 90.39 25 29.10 4.30 +chr17 41465877 41465877 A C het 207.58 98 30.30 2.12 +chr17 41584825 41584825 A C het 96.93 50 29.53 2.49 +chr17 41796999 41796999 A G unknown 36.70 92 19.08 0.97 +chr17 41836114 41836114 C A unknown 88.57 102 32.21 1.70 +chr17 41895137 41895137 G A unknown 45.71 35 21.13 3.26 +chr17 41930165 41930165 G T unknown 33.05 40 22.82 1.18 +chr17 41996814 41996814 A T het 54.14 176 10.90 0.37 +chr17 42085150 42085150 T C hom 252.26 14 27.48 19.40 +chr17 42085650 42085650 C G het 74.46 62 27.28 2.98 +chr17 42090437 42090437 A C unknown 31.99 80 29.38 1.68 +chr17 42290601 42290601 T C het 264.58 103 31.45 2.57 +chr17 42337976 42337976 G A unknown 1335.56 103 29.69 16.09 +chr17 42460877 42460877 G C het 94.11 53 25.91 2.19 +chr17 42476923 42476923 T C het 140.79 210 29.18 0.81 +chr17 42477064 42477064 G T het 45.83 72 25.68 1.24 +chr17 42477211 42477211 C G het 46.85 175 33.68 0.59 +chr17 42483208 42483208 A T hom 163.57 64 18.25 2.56 +chr17 42636007 42636007 G C het 446.58 95 30.72 4.70 +chr17 42797378 42797378 C G het 41.02 19 24.43 2.56 +chr17 42855124 42855124 T C het 238.63 41 32.20 5.82 +chr17 42981982 42981982 A C hom 89.28 84 11.98 2.35 +chr17 43013468 43013468 T G het 795.58 104 34.37 7.65 +chr17 43181325 43181325 A G het 410.58 83 24.51 4.95 +chr17 43307998 43307998 G A unknown 171.79 163 35.19 1.42 +chr17 43311013 43311013 A G het 156.65 69 28.47 2.27 +chr17 43332726 43332726 G T het 50.66 125 29.39 0.51 +chr17 43351986 43351986 A G het 188.60 94 26.01 2.01 +chr17 43364293 43364293 - G het 913.26 59 33.66 15.48 +chr17 43552985 43552985 A T hom 33.01 71 10.35 0.83 +chr17 43657437 43657437 A G unknown 49.41 12 20.35 4.49 +chr17 43678854 43678854 T C hom 56.41 26 20.65 2.17 +chr17 43893888 43893888 G T het 30.65 41 24.06 1.09 +chr17 43910455 43910455 G A hom 3166.54 129 33.13 24.55 +chr17 44049133 44049133 T C unknown 286.99 78 30.00 15.10 +chr17 44101563 44101563 T C unknown 142.99 103 26.66 5.50 +chr17 44344858 44344858 A G unknown 54.27 127 14.12 1.15 +chr17 44344988 44344988 C G unknown 246.02 58 26.46 14.47 +chr17 44949792 44949792 A T het 297.65 92 22.21 3.24 +chr17 45214673 45214673 T C het 1995.70 220 17.63 9.07 +chr17 45214682 45214682 A G het 1938.69 261 16.83 7.43 +chr17 45216172 45216172 A G het 224.58 188 11.63 1.19 +chr17 45219296 45219296 G C het 311.71 185 13.89 2.51 +chr17 45219723 45219723 C G het 199.75 48 23.06 4.16 +chr17 45235653 45235653 C T het 518.58 176 21.10 2.95 +chr17 45247305 45247305 A G unknown 304.57 281 25.40 2.63 +chr17 45266522 45266522 T C het 2014.58 168 26.38 11.99 +chr17 45363546 45363546 G T het 1224.79 118 37.34 14.08 +chr17 45490251 45490251 C T het 1149.79 111 33.52 15.13 +chr17 45734263 45734263 G A het 855.58 145 34.04 5.90 +chr17 45820054 45820054 C G het 69.69 46 28.82 1.88 +chr17 45917790 45917790 T A het 115.67 59 27.18 1.96 +chr17 45925138 45925138 G C hom 77.31 28 19.11 2.76 +chr17 46030261 46030261 A - unknown 64.79 35 19.01 2.23 +chr17 46133667 46133667 C A het 31.99 271 32.88 0.63 +chr17 46190706 46190706 G A het 41.62 151 19.46 0.59 +chr17 46691728 46691728 G C het 117.39 24 25.33 6.18 +chr17 46805600 46805600 T C het 40.56 168 30.07 0.49 +chr17 46970835 46970835 C T unknown 271.87 56 32.18 5.91 +chr17 46970836 46970836 A G hom 545.09 55 32.10 9.91 +chr17 47014586 47014586 C G het 119.63 32 34.09 8.55 +chr17 47237998 47237998 G A het 718.58 289 34.23 2.49 +chr17 47246979 47246979 A G het 631.58 172 30.33 3.67 +chr17 47284735 47284735 T C het 950.79 239 33.15 5.34 +chr17 47297636 47297636 C T unknown 31.39 36 25.96 2.62 +chr17 47329940 47329940 C G het 62.82 187 36.45 0.43 +chr17 47784314 47784314 T A unknown 67.14 215 33.47 0.60 +chr17 47900508 47900508 G C het 163.26 41 28.98 4.19 +chr17 48050538 48050538 C A het 107.49 96 26.81 1.56 +chr17 48151378 48151378 G A het 59.02 126 34.87 0.67 +chr17 48158810 48158810 C G het 50.09 29 32.89 2.09 +chr17 48184288 48184288 G A het 1737.72 107 26.25 16.24 +chr17 48185569 48185569 C G unknown 38.15 36 28.79 3.18 +chr17 48191818 48191818 A C het 252.07 62 22.73 10.50 +chr17 48542572 48542572 C G hom 1097.01 41 30.60 26.76 +chr17 48603283 48603283 G A het 683.58 200 28.48 3.42 +chr17 48625928 48625928 C G het 1550.85 78 30.57 19.88 +chr17 48692862 48692862 C T unknown 61.81 56 22.77 2.13 +chr17 48761403 48761403 G A het 55.26 67 23.87 1.18 +chr17 48817650 48817650 T A het 302.34 75 20.28 4.03 +chr17 48817651 48817651 A G het 196.90 73 19.70 3.79 +chr17 49231623 49231623 C G het 686.58 70 34.29 9.81 +chr17 49340557 49340557 A C het 82.11 97 28.40 1.11 +chr17 49343477 49343477 A C unknown 43.51 40 22.29 1.67 +chr17 49794696 49794696 T G hom 41.01 4 23.91 10.25 +chr17 50259142 50259142 A C unknown 48.09 9 22.62 9.62 +chr17 53158361 53158361 G A het 406.58 111 35.22 3.66 +chr17 53844847 53844847 C T hom 439.68 25 24.42 18.32 +chr17 55028045 55028045 C T hom 97.02 211 11.10 0.62 +chr17 55731350 55731350 A G unknown 126.67 11 23.42 11.52 +chr17 55962653 55962653 G T het 52.81 87 25.33 1.23 +chr17 56270409 56270409 G T het 691.58 204 33.57 3.39 +chr17 56277212 56277212 T A het 114.96 49 24.14 2.35 +chr17 56292144 56292144 C A unknown 126.69 102 36.62 3.02 +chr17 56326310 56326310 G - het 330.07 121 22.49 3.55 +chr17 56348230 56348230 T G het 341.79 112 35.59 3.88 +chr17 56357281 56357281 C T unknown 40.71 69 30.23 1.13 +chr17 56386508 56386508 T G het 33.02 105 21.44 0.65 +chr17 56435027 56435027 G A het 35.08 160 29.11 0.30 +chr17 56438301 56438301 G A het 66.85 45 25.37 2.23 +chr17 56620758 56620758 A C unknown 64.29 232 32.28 0.56 +chr17 56643159 56643159 - T het 207.55 36 30.20 5.77 +chr17 56811410 56811410 A T het 43.34 24 20.89 2.71 +chr17 57134221 57134221 A C het 131.58 74 34.44 1.78 +chr17 57287287 57287287 A G het 66.64 25 24.76 5.13 +chr17 57698208 57698208 C G unknown 55.77 12 18.68 9.29 +chr17 58004002 58004002 G T het 197.13 117 12.74 1.68 +chr17 58150572 58150572 A T het 70.91 282 33.63 0.35 +chr17 58232756 58232756 T A het 163.76 47 30.48 3.48 +chr17 58366022 58366022 T A het 84.18 84 21.60 1.36 +chr17 59146396 59146396 A T het 41.27 37 24.24 3.17 +chr17 59466090 59466090 T A unknown 60.36 113 36.36 1.21 +chr17 59469562 59469562 C T het 55.84 51 24.88 1.09 +chr17 59534790 59534790 G C unknown 75.53 55 29.15 1.94 +chr17 59955467 59955467 C T het 277.60 119 33.89 2.33 +chr17 59989085 59989085 A C het 217.84 117 28.03 2.09 +chr17 60045435 60045435 T C unknown 40.99 115 37.69 2.93 +chr17 60464688 60464688 C T hom 2952 85 34.83 34.73 +chr17 60753705 60753705 G C het 195.79 48 24.98 4.08 +chr17 60755746 60755746 T G hom 211.55 12 28.63 21.15 +chr17 60758153 60758153 T G unknown 42.02 15 16.81 6.00 +chr17 60759347 60759347 A G hom 1200.01 38 30.69 31.58 +chr17 60802372 60802372 G A unknown 237.99 194 38.02 5.67 +chr17 61417390 61417390 C G unknown 52.41 149 26.71 0.97 +chr17 61495810 61495810 C T het 277.59 207 31.44 2.70 +chr17 61549272 61549272 C A het 226.58 187 16.24 1.21 +chr17 61560044 61560044 G A het 251.90 111 28.63 3.07 +chr17 61574181 61574181 A C het 148.19 76 32.68 2.35 +chr17 61710154 61710154 A C het 326.99 162 34.30 2.57 +chr17 61791293 61791293 C G het 156.67 69 18.39 2.27 +chr17 61805607 61805607 G A hom 1022.57 63 40.11 16.23 +chr17 61805660 61805660 A C unknown 186.11 87 31.27 2.78 +chr17 61833880 61833880 A G het 30.70 102 34.25 0.44 +chr17 61908268 61908268 G T het 279.83 133 29.51 2.77 +chr17 61914201 61914201 A G het 238.58 112 31.18 2.13 +chr17 61958030 61958030 G A unknown 34.21 235 8.25 0.19 +chr17 62038590 62038590 G A het 724.58 84 27.85 8.63 +chr17 62084134 62084134 C G het 476.49 37 29.51 12.88 +chr17 62232073 62232073 A T unknown 1055.79 133 35.00 10.56 +chr17 62265839 62265839 C - het 2914.50 92 38.91 31.68 +chr17 62496749 62496749 C G het 432.69 91 34.93 4.75 +chr17 62747045 62747045 T A unknown 58.08 189 19.91 1.19 +chr17 63010457 63010457 T C het 84.61 155 34.45 1.13 +chr17 63052550 63052550 C T het 454.58 184 21.16 2.47 +chr17 63554591 63554591 G A het 1654.58 127 33.46 13.03 +chr17 63558040 63558040 T C unknown 35.03 7 22.40 7.01 +chr17 64025926 64025926 G T hom 2672.06 78 35.63 34.26 +chr17 64208396 64208396 G A het 119.57 40 33.68 5.69 +chr17 64738820 64738820 T A unknown 160.79 166 35.09 1.26 +chr17 64880558 64880558 G C het 71.95 48 26.74 1.50 +chr17 65027089 65027089 G C unknown 33.25 111 25.98 0.39 +chr17 65040817 65040817 T G het 394.58 123 36.92 3.21 +chr17 65051295 65051295 G C het 98.79 122 25.62 0.81 +chr17 65105564 65105564 T A unknown 70.99 170 37.80 2.03 +chr17 65144721 65144721 A T unknown 105.99 544 38.96 1.01 +chr17 65988183 65988183 T G het 32.97 163 15.20 0.29 +chr17 66091537 66091537 C G het 62.24 54 17.68 2.59 +chr17 66265406 66265406 A T het 35.07 38 22.80 0.92 +chr17 66424923 66424923 C T het 486.64 55 34.50 8.85 +chr17 66918617 66918617 C G het 44.64 49 28.36 1.49 +chr17 66982400 66982400 A T het 146.22 211 17.05 0.96 +chr17 66986140 66986140 T G het 314.58 96 26.87 3.28 +chr17 67210969 67210969 T A unknown 201.95 104 27.31 2.84 +chr17 67211899 67211899 A G het 149.99 43 26.25 3.75 +chr17 71192887 71192887 T G hom 101.87 89 20.21 1.67 +chr17 71346943 71346943 A G hom 2906.31 156 28.14 18.63 +chr17 71375393 71375393 C T het 98.82 79 27.73 1.25 +chr17 71415132 71415132 T C hom 130.76 9 28.84 21.79 +chr17 72283316 72283316 C G unknown 33.44 24 26.13 2.57 +chr17 72287149 72287149 T G het 877.58 314 31.62 2.79 +chr17 72308447 72308447 G A hom 270.22 15 23.20 18.01 +chr17 72310455 72310455 A T het 394.59 125 29.85 3.16 +chr17 72445381 72445381 T G unknown 30.02 80 34.58 1.36 +chr17 72470927 72470927 T C unknown 33.40 30 33.50 3.71 +chr17 72473645 72473645 A T unknown 30.01 83 34.90 2.31 +chr17 72691823 72691823 C A het 32.94 29 30.08 1.94 +chr17 72694666 72694666 G C unknown 46.32 34 23.43 1.72 +chr17 72840692 72840692 T A het 292.58 82 23.93 3.57 +chr17 72914480 72914480 A C hom 31.02 3 25.38 15.51 +chr17 73089852 73089852 T C hom 3810.01 137 36.39 27.81 +chr17 73208182 73208182 C T hom 186.31 26 24.41 11.64 +chr17 73282636 73282636 C T hom 3180.98 107 31.36 29.73 +chr17 73316558 73316558 A G het 274.58 137 23.36 2.00 +chr17 73389652 73389652 T A het 977.58 175 35.18 5.59 +chr17 73481508 73481508 G A het 31.31 59 24.46 0.82 +chr17 73499697 73499697 T C hom 524.87 45 29.46 11.66 +chr17 73501932 73501932 C G het 124.45 66 27.47 1.89 +chr17 73518203 73518203 G C hom 161.77 9 33.18 17.97 +chr17 73565143 73565143 C A het 84.24 42 31.60 2.01 +chr17 73615166 73615166 C T het 149.25 62 31.57 2.41 +chr17 73615962 73615962 T C unknown 169 62 37.44 10.56 +chr17 73625629 73625629 A C hom 949.07 37 26.54 25.65 +chr17 73627181 73627181 C T het 76.66 61 25.80 1.26 +chr17 73658489 73658489 T C hom 7869.01 227 36.15 34.67 +chr17 73735955 73735955 C T unknown 104.06 69 25.41 2.04 +chr17 73827205 73827205 T C het 660.79 61 32.85 14.06 +chr17 73838933 73838933 C G het 209.79 197 29.84 1.06 +chr17 73840243 73840243 G A het 563.79 65 32.28 10.44 +chr17 73969953 73969953 A G het 83.40 45 33.12 6.95 +chr17 74014634 74014634 G T unknown 165.01 50 33.71 15.00 +chr17 74053653 74053653 T C het 85.40 53 26.13 2.67 +chr17 74141510 74141510 C T unknown 110.87 30 26.36 4.11 +chr17 74152366 74152366 A G unknown 122.99 125 33.67 4.10 +chr17 74308959 74308959 C T het 127.20 177 29.01 0.99 +chr17 74392732 74392732 G A het 38.58 101 26.89 0.82 +chr17 74533572 74533572 T G hom 71.44 25 22.30 2.86 +chr17 74583165 74583165 C A het 331.58 54 34.72 6.14 +chr17 74583260 74583260 A C het 172.25 72 21.61 2.39 +chr17 74750062 74750062 G T het 33.19 26 24.40 1.28 +chr17 74901390 74901390 G T het 169.22 38 19.82 4.45 +chr17 74928921 74928921 C T unknown 50.01 9 19.89 5.56 +chr17 75187406 75187406 G C het 167.99 258 34.60 0.79 +chr17 75205611 75205611 T A unknown 102.91 29 20.39 5.72 +chr17 75484201 75484201 C - het 485.14 24 31.26 20.21 +chr17 76087754 76087754 A G unknown 57.10 32 37.45 7.14 +chr17 76100518 76100518 G A het 44.86 47 28.56 1.18 +chr17 76122655 76122655 C T het 30.86 59 20.57 0.81 +chr17 76183586 76183586 A G het 102.23 70 29.51 2.22 +chr17 76395430 76395430 C T hom 2292.57 125 34.81 18.34 +chr17 76422815 76422815 A G het 403.80 44 33.85 11.88 +chr17 76433981 76433981 C T het 49.48 37 35.50 1.90 +chr17 76440919 76440919 T A het 99.04 75 23.81 1.32 +chr17 76449367 76449367 A C het 51.99 109 35.45 1.62 +chr17 76458884 76458884 A - hom 358.42 44 22.22 8.15 +chr17 76464659 76464659 A T het 170.64 61 34.36 5.33 +chr17 76482256 76482256 A G hom 3387.01 121 31.74 27.99 +chr17 76482608 76482608 C T het 74.20 95 30.77 0.96 +chr17 76488614 76488614 G C het 95.73 51 26.83 1.88 +chr17 76498692 76498692 C T hom 5743.01 171 34.06 33.58 +chr17 76526623 76526623 C A het 911.58 96 28.05 9.50 +chr17 76528591 76528591 C T hom 2057.57 114 31.91 18.05 +chr17 76565317 76565317 A C het 122 97 24.75 1.69 +chr17 76619883 76619883 G A hom 43.01 6 20.13 10.75 +chr17 76802197 76802197 A G unknown 37.14 130 33.50 0.63 +chr17 76867185 76867185 G T hom 516.93 23 30.83 22.48 +chr17 76992943 76992943 G A unknown 62.84 124 22.78 0.92 +chr17 77076206 77076206 G A het 119.96 43 25.93 4.00 +chr17 77711882 77711882 A G unknown 37.84 97 33.81 0.54 +chr17 77753191 77753191 C T het 166.79 59 31.82 3.55 +chr17 78039291 78039291 C G unknown 100.79 110 24.90 1.77 +chr17 78061494 78061494 G T het 132.64 116 32.84 2.07 +chr17 78079669 78079669 G A het 297.71 47 24.21 6.33 +chr17 78084692 78084692 C T unknown 33.28 72 30.62 2.38 +chr17 78092540 78092540 C G het 31.80 105 22.93 0.55 +chr17 78156642 78156642 C G het 41.89 47 26.50 2.46 +chr17 78162170 78162170 G A het 574.79 90 34.74 8.84 +chr17 78199778 78199778 G A unknown 36.99 98 27.46 1.61 +chr17 78210682 78210682 C A unknown 193.13 187 33.15 2.12 +chr17 78215566 78215566 T G het 55.99 134 35.85 2.43 +chr17 78261910 78261910 A C het 119.36 28 26.02 4.26 +chr17 78319136 78319136 G A hom 2123.56 209 36.57 13.88 +chr17 78319218 78319218 C A unknown 33.62 200 34.88 0.34 +chr17 78327987 78327987 C T unknown 35.79 26 22.86 2.11 +chr17 78446857 78446857 C T het 92.27 17 22.22 7.10 +chr17 78489060 78489060 C A unknown 65.95 88 29.47 1.20 +chr17 78599655 78599655 G T het 1302.60 87 29.90 14.97 +chr17 78617439 78617439 T C hom 565.82 24 32.85 23.58 +chr17 78727907 78727907 T G het 942.58 190 31.53 4.96 +chr17 78854149 78854149 A G unknown 354.99 137 40.56 12.24 +chr17 78882565 78882565 T C unknown 97.57 382 38.46 0.56 +chr17 78919859 78919859 G C hom 36.77 8 16.00 12.26 +chr17 78972864 78972864 T C het 1125.57 76 32.09 14.81 +chr17 79226567 79226567 G T unknown 65.22 31 13.33 4.08 +chr17 79389251 79389251 C T hom 284.89 27 21.61 12.95 +chr17 79426481 79426481 A G het 209.71 32 24.14 6.55 +chr17 79427794 79427794 C G unknown 290.79 67 25.16 5.70 +chr17 79430635 79430635 A G het 43.68 64 34.14 1.56 +chr17 79478703 79478703 C A het 66.03 74 18.71 1.14 +chr17 79479025 79479025 G C unknown 31.26 178 10.91 0.24 +chr17 79612112 79612112 G T het 83.17 85 25.62 0.98 +chr17 79804890 79804890 T G unknown 176.99 528 39.90 2.13 +chr17 79805003 79805003 A G unknown 2805.79 365 43.51 10.79 +chr17 79817005 79817005 G A unknown 1046.79 107 37.26 12.32 +chr17 79872536 79872536 T A het 102.29 79 26.37 1.55 +chr17 79916841 79916841 T C unknown 44.99 108 31.36 1.96 +chr17 79969364 79969364 G A het 79.31 63 26.44 2.94 +chr17 79975118 79975118 T C het 92.71 33 19.31 2.81 +chr17 79983587 79983587 C A hom 35.01 4 30.16 17.51 +chr17 79993882 79993882 G T het 100.39 67 31.04 1.97 +chr17 80020887 80020887 T G unknown 73.70 63 33.08 2.30 +chr17 80022036 80022036 C G unknown 37.74 48 26.95 1.22 +chr17 80085788 80085788 G C het 72.86 180 34.86 0.54 +chr17 80091910 80091910 T A het 76.42 71 26.60 1.08 +chr17 80109584 80109584 T G het 96.09 43 21.22 2.23 +chr17 80135725 80135725 T C hom 129.27 7 36.83 21.55 +chr17 80332676 80332676 T C hom 46.05 32 19.10 1.77 +chr17 80356019 80356019 C G hom 801.63 64 31.00 12.53 +chr17 80367206 80367206 G A hom 636.71 69 29.40 11.58 +chr17 80394494 80394494 A G unknown 94.94 39 25.62 2.79 +chr17 80400398 80400398 G A unknown 80.55 133 30.57 1.28 +chr17 80405551 80405551 C A het 184.67 14 29.02 13.19 +chr17 80445903 80445903 C G het 756.58 156 32.87 4.85 +chr17 80534584 80534584 T G unknown 40.33 125 24.94 0.71 +chr17 80622475 80622475 A C unknown 86.65 69 29.36 2.17 +chr17 80828299 80828299 T G unknown 44.98 53 25.56 1.73 +chr17 80865681 80865681 A C het 39.22 109 31.67 0.36 +chr18 683116 683116 C G het 191.88 31 31.98 7.68 +chr18 706589 706589 A G hom 4701.01 165 38.69 28.49 +chr18 739719 739719 G A het 217.45 92 33.22 3.15 +chr18 2544633 2544633 G T het 79.02 61 28.02 2.03 +chr18 2740714 2740714 A G het 3209.78 201 35.01 15.97 +chr18 2771435 2771435 A C unknown 53.66 30 26.15 4.88 +chr18 2892474 2892474 G A het 181.99 106 38.23 7.91 +chr18 3119949 3119949 T A het 61.24 76 28.71 1.04 +chr18 3406335 3406335 A C het 52.26 80 15.96 0.65 +chr18 5956425 5956425 C T hom 4580.01 154 32.70 29.74 +chr18 5969627 5969627 C A het 200.76 52 30.77 3.86 +chr18 6950999 6950999 A G het 47 43 32.69 5.87 +chr18 7034508 7034508 T G unknown 166.99 107 41.29 5.57 +chr18 7231240 7231240 T C het 57.30 85 28.48 0.87 +chr18 7232769 7232769 G A hom 37.01 6 18.77 9.25 +chr18 8413804 8413804 G A het 55.27 62 21.44 1.18 +chr18 8798235 8798235 T C unknown 33.01 72 23.78 1.65 +chr18 8818825 8818825 T C het 67.48 44 21.12 1.69 +chr18 9557378 9557378 C G het 126.02 122 29.44 1.50 +chr18 9954274 9954274 C A unknown 90.50 97 15.62 1.31 +chr18 9989047 9989047 C T hom 71.25 12 16.28 7.92 +chr18 10297414 10297414 A G unknown 38.01 5 20.39 9.50 +chr18 10468453 10468453 C T het 1866.58 248 34.16 7.53 +chr18 10672719 10672719 A T unknown 53.29 238 37.50 0.82 +chr18 10724578 10724578 G C het 129.69 55 18.17 3.09 +chr18 10759961 10759961 G A hom 2095.59 77 30.81 27.22 +chr18 11851699 11851699 G T het 378.55 210 39.53 2.51 +chr18 11868561 11868561 C T het 210.04 193 36.44 1.30 +chr18 12057610 12057610 C G het 144.58 86 24.71 1.68 +chr18 12825797 12825797 G A het 264.58 114 30.54 2.32 +chr18 12913240 12913240 T G het 163.61 33 26.22 4.96 +chr18 13049906 13049906 C T unknown 82.96 132 29.00 0.81 +chr18 13095401 13095401 A T het 438.58 53 32.57 8.28 +chr18 13113532 13113532 A T het 221.55 115 35.78 1.93 +chr18 13884932 13884932 T A het 114.63 122 29.56 0.94 +chr18 14124463 14124463 A T het 158.84 195 17.81 0.88 +chr18 14183638 14183638 G C hom 99.70 294 7.41 0.34 +chr18 14221335 14221335 C T het 275.55 114 15.90 2.42 +chr18 14225950 14225950 G T het 41.09 146 11.01 0.28 +chr18 18622688 18622688 T C het 498.09 97 31.03 5.13 +chr18 18871638 18871638 C A hom 67.01 10 19.55 6.70 +chr18 19088669 19088669 C G unknown 152.80 63 24.15 3.47 +chr18 19140944 19140944 C G het 124.42 94 33.05 1.32 +chr18 19283611 19283611 C A unknown 77.99 242 37.71 1.86 +chr18 19433165 19433165 T C het 515.59 161 29.64 3.20 +chr18 19762726 19762726 A C het 75.90 79 28.39 0.96 +chr18 19997420 19997420 C G het 148.62 225 8.99 0.66 +chr18 20602067 20602067 A C het 30.98 102 24.87 0.46 +chr18 20817276 20817276 G C het 425.79 75 34.97 7.34 +chr18 21043001 21043001 A C het 682.58 189 33.95 3.61 +chr18 21043081 21043081 T G het 126.26 66 23.03 2.07 +chr18 21124945 21124945 C G hom 2052.57 168 34.81 12.22 +chr18 21192261 21192261 G T het 180.22 11 37.54 16.38 +chr18 21422447 21422447 C A unknown 172.85 149 32.62 1.66 +chr18 21487788 21487788 G A unknown 169.81 126 31.61 1.83 +chr18 21488031 21488031 C T het 43.73 42 37.57 1.82 +chr18 21508258 21508258 C A unknown 64.52 34 31.45 4.03 +chr18 21644091 21644091 G T unknown 364.08 126 23.79 4.92 +chr18 21660895 21660895 T G het 66.80 119 36.27 1.10 +chr18 21709864 21709864 A T unknown 73.56 25 25.55 4.33 +chr18 21883650 21883650 C T unknown 75.21 138 28.49 0.76 +chr18 21891975 21891975 A G het 1191.79 184 32.81 9.93 +chr18 23632728 23632728 C G het 69.78 175 30.37 0.61 +chr18 24442063 24442063 T G unknown 32.86 122 37.48 0.57 +chr18 28581659 28581659 C G het 153.74 101 27.30 1.52 +chr18 28720349 28720349 C A het 61.62 41 29.76 1.58 +chr18 28986133 28986133 A T unknown 99.29 166 37.61 0.83 +chr18 29049018 29049018 C T unknown 1366.79 238 38.04 8.33 +chr18 29121244 29121244 T A het 258.60 144 32.33 1.80 +chr18 29543337 29543337 A G hom 1541.98 77 23.65 20.03 +chr18 29614262 29614262 T G het 39.03 51 22.57 0.89 +chr18 29770118 29770118 G A het 242.58 239 34.54 1.01 +chr18 30349734 30349734 A C het 32.79 83 29.06 0.78 +chr18 30359199 30359199 A C het 35.88 34 25.96 1.06 +chr18 31323157 31323157 A T unknown 136.82 172 32.44 1.03 +chr18 32401457 32401457 G C het 134.12 70 28.73 1.92 +chr18 34349333 34349333 C T het 81.26 166 34.89 0.60 +chr18 34415366 34415366 T G het 546.62 203 21.54 2.69 +chr18 34855104 34855104 A C unknown 60.04 76 29.15 1.07 +chr18 36914853 36914853 C T hom 236.99 101 11.15 4.84 +chr18 38533890 38533890 T A unknown 31.77 9 18.13 10.59 +chr18 39618779 39618779 C A unknown 30.52 64 25.38 0.74 +chr18 43497609 43497609 A C unknown 42.13 151 34.12 0.71 +chr18 43519648 43519648 G A unknown 66.71 131 32.79 1.04 +chr18 43526580 43526580 A C unknown 35.40 95 30.35 0.80 +chr18 44109115 44109115 G A hom 67.41 19 20.50 4.81 +chr18 44126883 44126883 G A het 39.20 43 27.35 1.63 +chr18 44135138 44135138 C G het 53.60 80 24.05 0.86 +chr18 44149474 44149474 G A unknown 1958.79 262 33.35 10.47 +chr18 44639361 44639361 G T het 373.62 103 27.09 3.63 +chr18 46090321 46090321 A G unknown 61.25 13 14.17 6.13 +chr18 46468891 46468891 T A het 222.77 253 33.42 1.92 +chr18 47014953 47014953 - TGT hom 2417.53 78 25.70 30.99 +chr18 47017727 47017727 T G het 2541.58 399 30.27 6.37 +chr18 47101823 47101823 T A het 148.23 108 36.89 1.76 +chr18 47113242 47113242 G A het 733.79 127 32.75 8.43 +chr18 47177517 47177517 G A het 33.17 43 30.77 3.69 +chr18 47291286 47291286 G A hom 76.03 14 19.02 12.67 +chr18 47480898 47480898 T C het 706.58 76 34.92 9.30 +chr18 47795900 47795900 G A het 205.40 64 28.09 4.19 +chr18 47795901 47795901 G A het 86.23 62 28.23 1.92 +chr18 47795948 47795948 T C hom 31.73 55 22.35 1.22 +chr18 48333077 48333077 G T unknown 169.11 202 37.40 2.77 +chr18 48333367 48333367 T C het 67.25 15 25.13 5.60 +chr18 48341063 48341063 G A unknown 380.21 37 30.51 15.84 +chr18 48703283 48703283 A C het 170.42 501 38.74 0.34 +chr18 50432583 50432583 T G unknown 40.85 170 33.86 0.50 +chr18 52555398 52555398 G A hom 9882.01 290 34.13 34.08 +chr18 52942827 52942827 G A het 3118.57 156 40.49 19.99 +chr18 53131488 53131488 C A hom 251.77 13 32.70 19.37 +chr18 54270230 54270230 A T unknown 52.71 100 39.11 0.68 +chr18 54346510 54346510 G A hom 1007.24 50 24.31 20.14 +chr18 54354239 54354239 T C hom 1487.02 50 32.12 29.74 +chr18 54814730 54814730 G A het 106.04 30 28.14 10.60 +chr18 55274308 55274308 G C het 168.59 140 30.17 1.20 +chr18 55288879 55288879 A G hom 710.20 34 27.73 20.89 +chr18 55335759 55335759 G C unknown 50.65 98 32.52 1.21 +chr18 55947723 55947723 C T unknown 47.77 4 26.51 23.88 +chr18 56204388 56204402 CAGTTGATGTGTCCT - het 5897 159 30.47 37.09 +chr18 57115203 57115203 T C unknown 789.10 107 28.47 9.51 +chr18 57429076 57429076 C A unknown 53.47 251 13.52 0.41 +chr18 57477991 57477991 C T unknown 50.77 4 27.67 25.38 +chr18 58187148 58187148 G A het 54.01 32 23.37 3.18 +chr18 59217341 59217341 A C het 98.81 106 32.38 1.19 +chr18 59285628 59285628 C G het 67.67 63 34.24 2.51 +chr18 59780309 59780309 G A het 137.40 45 31.22 3.05 +chr18 60242795 60242795 A C het 2200.79 280 39.74 11.00 +chr18 60645818 60645818 C A het 52.09 57 22.14 1.86 +chr18 61002537 61002537 T G het 282.58 181 37.14 1.56 +chr18 61170925 61170925 T C hom 3648.01 120 31.95 30.40 +chr18 61465810 61465810 A G het 110.85 86 17.12 1.54 +chr18 61562371 61562371 T C het 179.79 40 35.82 6.42 +chr18 61575232 61575232 A G het 319.83 51 31.74 9.69 +chr18 64176393 64176393 C A unknown 79.56 188 34.82 2.27 +chr18 65945455 65945455 T G het 89.69 65 18.26 1.38 +chr18 66355061 66355061 T C unknown 514.99 119 38.67 15.61 +chr18 67672561 67672561 C T het 258.85 62 24.90 4.18 +chr18 70205949 70205949 C G het 170.63 196 39.16 0.87 +chr18 72245594 72245594 T A het 76.55 130 37.75 1.08 +chr18 72343008 72343008 T C hom 8122.01 245 34.81 33.15 +chr18 72632590 72632590 C A het 77 195 27.59 1.67 +chr18 72997582 72997582 T C unknown 85.13 92 25.93 1.77 +chr18 72998328 72998328 C G unknown 33.34 141 31.02 0.46 +chr18 73139418 73139418 T A het 84.02 212 36.13 1.56 +chr18 74780980 74780980 T A het 69.94 63 35.01 1.52 +chr18 75148016 75148016 G A hom 680.21 40 23.06 17.01 +chr18 75700562 75700562 G A hom 41.77 9 15.76 13.92 +chr18 77096582 77096582 A C hom 97.74 25 17.20 3.91 +chr18 77211900 77211900 C G het 97.47 42 24.62 3.14 +chr18 77475234 77475234 T A het 98.70 55 32.30 1.79 +chr18 77796574 77796574 C T het 590.61 39 31.34 16.41 +chr18 77797321 77797321 C T het 1807.61 156 35.35 11.59 +chr19 419084 419084 T C unknown 55.83 18 18.06 7.98 +chr19 547440 547440 A G het 251.58 82 26.02 3.07 +chr19 608052 608052 A C het 96.47 67 11.87 1.44 +chr19 617204 617204 T G unknown 39.58 84 28.49 0.94 +chr19 617580 617580 A G het 31.77 76 28.45 0.99 +chr19 758543 758543 G A het 228.80 54 22.80 4.24 +chr19 761583 761583 A C unknown 64.16 41 30.81 4.28 +chr19 810460 810460 C G unknown 514.61 44 35.48 17.15 +chr19 829527 829527 T A het 66.55 117 26.27 0.78 +chr19 830854 830854 T C het 2893.54 106 35.06 27.30 +chr19 840984 840984 C T het 54.71 26 29.62 7.82 +chr19 871974 871974 C G het 72.54 29 28.03 2.50 +chr19 960026 960026 G A unknown 43.57 67 30.36 1.28 +chr19 1011846 1011846 T C hom 123.54 9 21.46 13.73 +chr19 1013388 1013388 G A hom 456.84 66 30.71 6.92 +chr19 1037681 1037681 G A het 500.58 248 16.53 2.02 +chr19 1051908 1051908 G A het 111.58 94 30.04 3.10 +chr19 1058705 1058705 C G het 32.01 162 29.25 0.73 +chr19 1073173 1073173 G T het 311.58 129 24.44 2.42 +chr19 1073464 1073464 C A het 338.85 30 26.31 11.29 +chr19 1080801 1080801 C A het 38.52 70 27.06 0.77 +chr19 1086043 1086043 T C unknown 338.92 60 31.14 7.88 +chr19 1090065 1090065 C G unknown 31.90 35 22.87 1.88 +chr19 1112089 1112089 C T unknown 210.90 47 28.30 5.41 +chr19 1219281 1219281 G A unknown 66.06 12 22.51 6.61 +chr19 1399255 1399255 C T het 33.20 66 24.71 0.69 +chr19 1418341 1418341 G C het 116.74 70 25.67 1.67 +chr19 1422297 1422297 C T het 958.79 122 31.80 10.09 +chr19 1432533 1432533 C A het 91.79 99 28.66 1.27 +chr19 1486921 1486921 C T het 376.29 46 21.97 8.18 +chr19 1556482 1556482 T C unknown 58.22 24 12.64 5.29 +chr19 1800032 1800032 A G het 150.58 105 24.45 1.43 +chr19 1811692 1811692 C T het 38.77 32 22.30 1.21 +chr19 1828102 1828102 G A het 38.41 72 29.99 0.70 +chr19 1957079 1957079 C T hom 41.01 5 22.08 20.51 +chr19 2046445 2046445 A T unknown 30.04 21 20.72 3.00 +chr19 2078488 2078488 T C hom 635.59 74 32.15 8.59 +chr19 2120961 2120961 C T unknown 45.64 74 33.26 1.11 +chr19 2185960 2185960 C T het 60.22 314 29.41 0.23 +chr19 2247822 2247822 T C het 90.20 81 25.07 1.53 +chr19 2278622 2278622 C T hom 31.45 27 17.66 1.57 +chr19 2416809 2416809 T C het 93.96 61 36.07 2.04 +chr19 2424188 2424188 G T unknown 30.55 13 24.24 5.09 +chr19 2444599 2444599 A C het 189.63 53 30.61 3.58 +chr19 2762585 2762585 A C unknown 678.79 155 34.31 5.95 +chr19 2786110 2786110 G A unknown 44.71 15 16.22 4.97 +chr19 2811874 2811874 T C unknown 73.11 44 14.73 1.98 +chr19 2934282 2934282 T C hom 4056.01 182 25.39 22.29 +chr19 2989235 2989235 G C het 275.50 92 32.38 3.67 +chr19 3162910 3162910 T G het 85.23 104 23.44 1.11 +chr19 3193402 3193402 C G unknown 77.16 50 25.03 1.84 +chr19 3251116 3251116 C A het 288.99 82 31.52 12.04 +chr19 3548080 3548080 G A het 39.41 24 23.73 2.32 +chr19 3785223 3785223 T G hom 893.60 39 30.21 22.91 +chr19 3819161 3819161 G A het 40.05 37 20.52 2.50 +chr19 3822049 3822049 G C hom 46.19 14 25.74 3.85 +chr19 3822258 3822258 T G het 41 81 30.81 0.93 +chr19 3960153 3960153 T A het 131.32 252 34.05 0.66 +chr19 4222784 4222784 C T unknown 34.09 62 36.43 2.13 +chr19 4358029 4358029 C T het 228.58 61 29.09 3.75 +chr19 4358039 4358039 G C het 46.19 58 27.49 1.15 +chr19 4454181 4454181 C A het 99.82 34 29.22 2.94 +chr19 4491630 4491630 A T unknown 41.01 133 35.18 0.66 +chr19 4679869 4679869 G T het 675.58 97 31.50 6.96 +chr19 4704387 4704387 T C het 120.89 46 21.86 3.10 +chr19 4817484 4817484 C A unknown 93.93 75 25.02 1.81 +chr19 4817913 4817913 C T het 183.79 83 25.32 2.21 +chr19 4861304 4861304 A C unknown 57.94 32 22.34 2.76 +chr19 5004191 5004191 G A unknown 49.77 6 22.41 16.59 +chr19 5208393 5208393 A C het 104.05 46 27.90 2.26 +chr19 5257151 5257151 C T unknown 38.01 7 17.18 7.60 +chr19 5287083 5287083 G A unknown 37.01 7 19.21 7.40 +chr19 5679535 5679535 T A het 320.58 83 30.30 3.86 +chr19 5684776 5684776 G T het 140.60 67 18.92 2.10 +chr19 5866585 5866585 C T het 1225.61 90 24.36 13.62 +chr19 5927922 5927922 C A het 186.67 66 23.78 2.83 +chr19 5978163 5978163 C G hom 34.74 21 18.31 2.67 +chr19 6040004 6040004 G T het 55.67 10 26.80 11.13 +chr19 6312326 6312326 A C het 47.48 73 23.42 0.65 +chr19 6389726 6389726 T C het 48.84 60 26.51 1.00 +chr19 6411793 6411793 G T het 46.95 54 24.73 1.68 +chr19 6452483 6452483 T G het 180.59 70 28.82 2.58 +chr19 6686030 6686030 G A unknown 124.97 86 31.55 2.12 +chr19 6702042 6702042 A G hom 750.31 27 28.56 27.79 +chr19 6744718 6744718 G C unknown 772.79 107 33.47 10.59 +chr19 6754139 6754139 T G het 66.62 61 29.29 2.15 +chr19 6935113 6935113 C T het 394.35 142 21.91 3.46 +chr19 6939910 6939910 G A hom 618.24 21 31.82 29.44 +chr19 7504861 7504861 G T het 322.58 101 35.65 3.19 +chr19 7505143 7505143 C T unknown 62.95 52 17.85 4.20 +chr19 7595264 7595264 G T het 423.58 239 33.85 1.77 +chr19 7607441 7607441 C T unknown 138.87 23 22.02 7.71 +chr19 7607730 7607730 C T het 40.47 52 27.63 0.78 +chr19 7675543 7675543 G T het 618.58 165 25.74 3.75 +chr19 7734347 7734347 T G hom 612.47 92 16.92 6.66 +chr19 7743791 7743791 A C hom 31.34 15 26.12 3.13 +chr19 7812436 7812436 G T het 97.42 80 24.25 1.22 +chr19 7830066 7830066 C T unknown 47.10 90 10.90 1.05 +chr19 7830583 7830583 A G unknown 40.02 194 13.90 0.38 +chr19 7970635 7970635 A G hom 3034.98 98 31.10 30.97 +chr19 7992494 7992494 G C unknown 30.80 61 25.35 0.83 +chr19 8028450 8028450 T C het 673.58 214 38.99 3.15 +chr19 8120964 8120964 C T het 121.80 71 26.39 2.59 +chr19 8140359 8140359 A C het 31.04 42 25.69 0.94 +chr19 8175656 8175656 G T unknown 92.71 88 28.25 2.02 +chr19 8176674 8176674 G A het 168.58 81 28.63 2.08 +chr19 8212279 8212279 C A het 40.78 15 21.33 5.83 +chr19 8315847 8315847 A G hom 3111.10 137 27.49 22.71 +chr19 8389404 8389404 G A unknown 63.60 51 27.96 2.12 +chr19 8412189 8412189 G C unknown 332.79 73 22.47 6.66 +chr19 8436352 8436352 T G het 263.58 105 34.14 2.51 +chr19 8550926 8550926 A C het 73.13 98 27.54 0.75 +chr19 8553630 8553630 C T hom 5031.01 159 30.91 31.64 +chr19 8932092 8932092 G A hom 35.91 46 15.26 3.26 +chr19 8995853 8995853 T C hom 1843 68 28.90 27.10 +chr19 9015526 9015526 A G unknown 150.74 131 26.95 2.18 +chr19 9021050 9021050 T C het 272.12 199 23.11 1.37 +chr19 9060656 9060656 C T hom 4467.01 403 30.20 14.89 +chr19 9070310 9070310 A C het 778.58 324 26.81 2.40 +chr19 9070837 9070837 G A hom 6932.01 428 34.79 16.20 +chr19 9090784 9090784 C T unknown 1544.79 170 38.10 12.87 +chr19 9115892 9115892 C A het 31.61 37 23.45 0.96 +chr19 9237435 9237435 A G het 225.99 327 29.75 3.05 +chr19 9271353 9271353 G A het 30.34 75 22.33 0.80 +chr19 9293141 9293141 C G unknown 39.30 69 20.73 0.98 +chr19 9296909 9296909 T A het 38.19 280 30.25 0.18 +chr19 9372410 9372410 T A het 47.79 135 23.78 0.50 +chr19 9408163 9408163 G A unknown 119.99 76 34.08 4.62 +chr19 9639038 9639038 T A het 326.58 75 28.54 4.35 +chr19 9868360 9868360 G T unknown 69 139 35.77 3.45 +chr19 10071404 10071404 G C unknown 194.11 145 31.93 1.90 +chr19 10071634 10071634 T C unknown 624.57 75 32.21 11.78 +chr19 10078708 10078708 A G het 191.19 108 23.97 2.36 +chr19 10107333 10107333 A T het 76.85 72 28.71 1.57 +chr19 10224772 10224772 C G unknown 37.53 34 22.42 4.17 +chr19 10225839 10225839 C T het 37.32 53 31.36 1.62 +chr19 10226341 10226344 TGCC - het 817.54 90 29.75 9.08 +chr19 10265135 10265135 T G het 168.24 214 35.16 0.79 +chr19 10397956 10397956 A G unknown 36 51 32.41 2.25 +chr19 10441117 10441117 G A hom 963.57 70 29.63 13.77 +chr19 10569643 10569643 T C unknown 64.22 6 20.05 16.05 +chr19 10574505 10574505 A C het 33.24 181 28.59 0.39 +chr19 10577843 10577843 C A unknown 1440.79 125 37.48 15.66 +chr19 10599836 10599836 G C unknown 572.79 63 32.88 11.46 +chr19 10655605 10655605 G A het 1116.79 209 33.24 7.25 +chr19 10692117 10692117 T C unknown 299.99 214 34.20 6.98 +chr19 10694350 10694350 C A unknown 89.04 67 20.50 1.65 +chr19 10793824 10793824 C A unknown 32.98 212 34.62 0.31 +chr19 10823210 10823210 G C het 255.67 176 32.72 1.45 +chr19 10828991 10828991 C G unknown 49.25 8 33.73 24.63 +chr19 11099943 11099943 G C het 182.79 110 31.66 2.05 +chr19 11150192 11150192 T A unknown 109.09 60 31.29 3.64 +chr19 11230808 11230808 T G het 169.81 144 35.72 1.18 +chr19 11258431 11258431 T C het 138.99 61 32.12 8.18 +chr19 11280614 11280614 A C het 201.58 129 33.06 1.56 +chr19 11358799 11358799 G A het 540.55 103 34.09 11.50 +chr19 11462682 11462682 G T het 40.52 74 23.78 0.55 +chr19 11532300 11532300 C T het 479.59 153 38.59 3.13 +chr19 11553362 11553362 A T het 39.92 57 31.27 0.70 +chr19 11577099 11577099 A T het 150.31 72 28.93 2.89 +chr19 11649854 11649854 A - hom 105.13 26 16.08 5.26 +chr19 11849734 11849734 C A het 53.01 52 28.32 1.56 +chr19 12157560 12157560 C T het 119.74 296 22.27 0.53 +chr19 12386736 12386736 T A het 63.64 306 20.00 0.37 +chr19 12460663 12460663 T G het 50.32 270 15.32 0.26 +chr19 12491955 12491955 A C het 1926.56 105 26.70 18.35 +chr19 12691185 12691185 C T hom 786.60 56 28.87 14.05 +chr19 12882060 12882060 G A unknown 78.96 22 27.45 4.39 +chr19 12885523 12885523 T G het 186.34 103 33.31 3.73 +chr19 12976184 12976184 G C het 68.60 183 34.07 0.80 +chr19 12984039 12984039 G A het 265.67 49 26.28 5.42 +chr19 12995920 12995920 T C het 45.02 26 19.24 2.05 +chr19 13030125 13030125 C G hom 121.47 26 19.63 4.67 +chr19 13035823 13035823 G A het 64.57 117 31.15 1.13 +chr19 13039620 13039620 C G het 809.58 126 27.94 6.43 +chr19 13355900 13355900 T G unknown 87.09 16 19.82 6.70 +chr19 13394137 13394137 T G unknown 109.33 135 30.36 1.50 +chr19 13443770 13443770 T C hom 3228.29 118 33.03 27.36 +chr19 13862746 13862746 T G hom 265.49 19 24.21 13.97 +chr19 13867124 13867124 C T unknown 31.08 60 27.05 2.07 +chr19 13885309 13885309 C T hom 497.61 42 33.72 14.64 +chr19 14023173 14023173 C G het 45.63 53 33.31 1.52 +chr19 14028967 14028967 G C unknown 51.07 23 25.95 2.84 +chr19 14150255 14150255 G T unknown 35.75 87 37.24 0.92 +chr19 14161666 14161666 C T het 539.58 70 29.42 7.71 +chr19 14200297 14200297 T G het 38.65 65 29.19 0.59 +chr19 14217646 14217646 A G het 283.81 105 23.74 3.46 +chr19 14266107 14266107 C A het 84.96 90 18.98 1.27 +chr19 14269153 14269153 C A het 86.56 68 21.95 1.27 +chr19 14674533 14674533 T C unknown 37.53 26 24.08 1.98 +chr19 14758168 14758168 G A unknown 447.99 105 36.70 14.93 +chr19 14826861 14826861 A G het 245.79 110 31.62 3.00 +chr19 14876174 14876174 C G unknown 32.99 114 23.23 1.50 +chr19 14910571 14910571 G C unknown 37.89 185 13.31 0.46 +chr19 14997907 14997907 C T unknown 652.99 111 35.93 21.06 +chr19 15226025 15226025 G T het 77.52 75 30.26 1.03 +chr19 15226970 15226970 G A hom 2230.98 85 25.45 26.25 +chr19 15234388 15234388 C T het 30.11 89 23.55 0.73 +chr19 15273248 15273248 A C hom 946.10 43 25.61 22.00 +chr19 15302965 15302965 C T het 157.26 37 20.84 4.49 +chr19 15341774 15341774 T G unknown 54.99 172 35.65 0.66 +chr19 15366073 15366073 A G unknown 111.62 65 28.85 3.60 +chr19 15511781 15511781 G C het 133.68 140 35.45 1.35 +chr19 15562604 15562604 G C het 348.61 86 31.10 4.05 +chr19 15795842 15795842 C T het 969.10 60 26.47 16.15 +chr19 15807305 15807305 T C unknown 75.42 240 20.46 0.57 +chr19 16021413 16021413 G A het 61.24 37 19.86 2.27 +chr19 16025488 16025488 A G het 112.60 150 25.26 0.75 +chr19 16060233 16060233 C A het 169.41 90 22.03 1.88 +chr19 16060658 16060658 A G unknown 200.83 197 14.10 1.42 +chr19 16136405 16136405 C T hom 409.63 19 26.34 21.56 +chr19 16514501 16514501 G C het 130.83 62 18.43 2.11 +chr19 16551761 16551761 C G het 46.87 177 33.12 0.37 +chr19 16606914 16606914 C G het 96.87 22 25.99 4.84 +chr19 16611892 16611892 C G unknown 83.57 219 32.19 0.78 +chr19 16623857 16623857 G C unknown 36.42 46 29.64 3.04 +chr19 16682265 16682265 G T unknown 30.28 88 28.35 0.56 +chr19 16687119 16687119 G C het 88.91 63 30.47 1.98 +chr19 17015105 17015105 A C het 415.65 84 33.72 4.95 +chr19 17039663 17039663 T A unknown 89.03 68 26.57 1.62 +chr19 17160691 17160691 A T unknown 105.18 225 32.93 2.02 +chr19 17169300 17169300 G T het 67.07 87 28.39 1.00 +chr19 17286438 17286438 A T het 414.81 52 33.62 9.43 +chr19 17327045 17327045 G T het 308.59 143 37.37 2.16 +chr19 17405176 17405176 T A het 37.83 78 21.03 1.02 +chr19 17451736 17451736 C T het 110.04 30 30.41 15.72 +chr19 17487869 17487869 G T unknown 43.21 86 32.88 0.96 +chr19 17488155 17488155 C G hom 86.43 65 18.43 1.33 +chr19 17641754 17641754 C G unknown 50.25 26 19.76 3.59 +chr19 17732687 17732687 G C unknown 95.84 227 34.84 0.82 +chr19 17744075 17744075 - C het 281.95 122 33.36 9.10 +chr19 17785506 17785506 C G het 696.58 91 32.65 7.65 +chr19 17845153 17845153 G T unknown 30.22 53 26.33 0.69 +chr19 18085035 18085035 T G het 64.81 65 33.69 1.91 +chr19 18183148 18183148 C A unknown 51.71 62 30.37 3.69 +chr19 18239307 18239307 T C het 77.01 39 26.71 1.97 +chr19 18258342 18258342 C G het 31.84 102 25.26 0.59 +chr19 18288461 18288461 C A unknown 41.56 72 34.68 1.12 +chr19 18288529 18288529 G C unknown 86.09 105 39.75 1.79 +chr19 18308349 18308349 G A unknown 34.88 74 27.76 0.61 +chr19 18375235 18375235 T C het 48.16 25 28.85 2.68 +chr19 18378384 18378384 A C unknown 32.24 86 30.78 1.34 +chr19 18423406 18423406 G A het 37.72 81 25.71 0.64 +chr19 18557657 18557657 C T unknown 615.48 50 34.36 15.78 +chr19 18709768 18709768 G A het 68.97 35 24.77 1.97 +chr19 18710750 18710750 A T het 70.85 27 18.94 3.22 +chr19 18779082 18779082 T A het 69.61 46 27.65 1.93 +chr19 18779086 18779086 G A unknown 36.43 52 24.61 1.30 +chr19 18779728 18779728 C T unknown 40.78 77 22.37 0.97 +chr19 18860618 18860618 G C unknown 38.56 134 26.62 0.36 +chr19 18898422 18898422 T C het 53.37 175 30.81 1.52 +chr19 18963222 18963222 G A het 30.13 26 24.84 1.88 +chr19 18975021 18975021 G A het 100.27 90 26.29 1.52 +chr19 19032648 19032648 C A unknown 66.30 93 33.23 3.01 +chr19 19037053 19037053 T C het 31.28 14 28.09 5.21 +chr19 19049597 19049597 G T unknown 42.02 42 38.51 3.23 +chr19 19105366 19105366 G T hom 39.65 69 21.84 0.68 +chr19 19153801 19153801 - C hom 602.30 27 27.90 22.31 +chr19 19338484 19338484 C A het 119.79 260 33.26 0.60 +chr19 19412956 19412956 T A het 71.71 75 25.41 0.96 +chr19 19627085 19627085 C G unknown 30.60 58 36.20 0.99 +chr19 19747657 19747657 T G het 33.34 29 23.20 1.96 +chr19 20135217 20135217 T C het 137.13 136 26.35 1.01 +chr19 20807053 20807053 T G het 245.58 149 10.73 1.65 +chr19 20808149 20808149 A G het 629.58 151 16.50 4.17 +chr19 21116987 21116987 T A het 100.90 166 12.84 0.61 +chr19 21144334 21144334 C T het 58.88 79 14.57 0.75 +chr19 21216819 21216819 C A het 85.11 138 14.61 0.70 +chr19 21510635 21510635 G A het 65.47 62 13.56 1.36 +chr19 21564001 21564001 A G het 494.30 100 17.41 4.94 +chr19 21588053 21588053 C T het 100.36 87 14.49 1.15 +chr19 21817906 21817906 C T het 135.99 21 33.59 9.07 +chr19 21992945 21992945 T A het 63.78 33 24.54 7.09 +chr19 22379587 22379587 G T het 55.57 151 22.53 0.69 +chr19 23869705 23869705 G A het 150.40 53 23.17 3.96 +chr19 23938423 23938423 T A unknown 84.87 95 22.58 1.12 +chr19 24014697 24014697 A C het 278.26 54 24.82 5.25 +chr19 24183653 24183653 T C hom 413.40 25 19.19 16.54 +chr19 24184743 24184743 A G hom 297.89 26 18.57 11.46 +chr19 24227705 24227705 C A het 74.86 89 34.67 1.04 +chr19 29213744 29213744 T C het 141.93 47 30.05 3.02 +chr19 30101382 30101382 A C unknown 30.07 47 27.77 3.76 +chr19 30193681 30193681 G C unknown 30.08 51 25.70 2.73 +chr19 30199180 30199180 G A het 70.02 89 20.99 1.03 +chr19 30935996 30935996 T C het 51.89 56 24.95 0.93 +chr19 30936697 30936697 C T het 49.51 22 20.06 2.91 +chr19 32838287 32838287 A C het 1226.89 50 32.35 24.54 +chr19 33110540 33110540 C T het 46.24 42 26.08 1.49 +chr19 33117666 33117666 T C het 1081.57 93 34.24 11.63 +chr19 33200272 33200272 C T unknown 60.69 181 22.45 0.64 +chr19 33584469 33584469 T A het 429.82 114 35.75 4.88 +chr19 33603289 33603289 C - het 1128.75 103 35.75 14.29 +chr19 33604531 33604531 C T het 33.34 13 29.78 3.03 +chr19 33655123 33655123 G T het 273.60 65 28.32 4.21 +chr19 33697290 33697290 A T unknown 125.86 16 28.54 9.68 +chr19 33878198 33878198 A G hom 174.06 41 22.24 4.25 +chr19 34884114 34884114 T G het 57.55 65 25.08 1.22 +chr19 34887607 34887607 T G het 38.90 59 29.31 0.76 +chr19 35215941 35215941 - T hom 249.85 29 22.07 8.62 +chr19 35800662 35800662 G T hom 418.42 27 20.11 15.50 +chr19 35803249 35803249 T G het 307.36 60 18.38 5.12 +chr19 35828914 35828914 G C het 35.99 69 34.90 2.00 +chr19 35836898 35836898 C T unknown 31.02 8 16.04 6.20 +chr19 35940453 35940453 G C hom 50.01 3 32.28 16.67 +chr19 35991451 35991451 G C het 91.33 65 24.99 1.41 +chr19 36003550 36003550 C T het 43.75 87 22.85 1.07 +chr19 36034198 36034198 C T het 136.74 107 31.45 1.28 +chr19 36104834 36104834 C T unknown 47.18 222 33.13 1.07 +chr19 36110298 36110298 T A het 39.66 61 25.17 1.10 +chr19 36164232 36164232 G A het 174.89 88 22.45 1.99 +chr19 36166799 36166799 C G het 93.12 72 28.21 1.29 +chr19 36219914 36219914 C G het 256.79 147 31.60 1.75 +chr19 36223960 36223960 A C het 57.05 34 19.01 4.39 +chr19 36230402 36230402 G C unknown 40.73 82 32.06 0.97 +chr19 36243089 36243089 T C hom 2248.98 74 34.63 30.39 +chr19 36268771 36268771 C T unknown 315.99 129 34.66 10.53 +chr19 36303333 36303333 C T unknown 33.42 33 14.87 1.76 +chr19 36339372 36339372 C T het 32.89 43 25.52 0.89 +chr19 36350479 36350479 C G het 290.65 73 22.77 3.98 +chr19 36572721 36572721 G C het 188.58 101 29.23 1.87 +chr19 36616289 36616289 T A het 196.31 191 32.08 1.35 +chr19 36988338 36988338 T C unknown 114.45 82 11.15 1.64 +chr19 36988598 36988598 G T het 129.93 42 32.22 3.82 +chr19 36988842 36988842 T - het 193.81 57 16.02 3.40 +chr19 37310288 37310288 T G het 175.76 131 24.29 1.34 +chr19 37392575 37392575 A C unknown 35.28 10 22.37 8.82 +chr19 37487632 37487632 G A het 607.55 111 37.69 9.96 +chr19 37660826 37660826 C G het 43.91 137 29.47 0.65 +chr19 37698004 37698004 T A unknown 105.88 150 19.82 0.95 +chr19 38126522 38126522 A C het 78.52 137 27.81 0.77 +chr19 38229366 38229366 A C unknown 257.89 317 29.85 1.21 +chr19 38384898 38384898 T G het 104.09 222 29.93 0.91 +chr19 38385159 38385159 A T unknown 66.88 63 34.09 1.39 +chr19 38597143 38597143 G T het 154.22 187 35.89 1.11 +chr19 38795547 38795549 GAA - het 888.75 97 28.04 12.88 +chr19 38853104 38853104 A C unknown 34.05 135 38.44 1.03 +chr19 38877266 38877266 C G hom 61.05 17 16.79 3.59 +chr19 38934912 38934912 G T het 37.01 74 34.42 0.62 +chr19 38939183 38939183 T G het 59.60 107 31.33 1.17 +chr19 38958554 38958554 T A het 50.10 23 25.90 3.85 +chr19 39008412 39008412 A T het 105.80 58 23.87 1.82 +chr19 39127421 39127421 G T unknown 114.46 125 29.25 1.85 +chr19 39433499 39433499 T G het 272.81 45 35.86 8.80 +chr19 39618613 39618613 G C hom 144.54 9 24.81 16.06 +chr19 39691239 39691239 A G het 915.79 158 35.20 8.33 +chr19 39826218 39826218 T C het 523.58 132 24.70 3.97 +chr19 39869293 39869293 A T het 162.99 35 18.79 4.66 +chr19 39871332 39871332 C G het 30.38 26 17.06 1.60 +chr19 39876678 39876678 C A het 255.70 106 26.51 2.41 +chr19 39882240 39882240 T G unknown 35.99 122 39.85 1.06 +chr19 39899421 39899421 G T unknown 79.99 44 20.16 3.08 +chr19 39994822 39994822 G A het 268.69 92 25.92 2.92 +chr19 39998589 39998589 G C het 43.59 106 32.97 0.97 +chr19 40222000 40222000 C G het 414.58 245 38.39 1.69 +chr19 40368391 40368391 G A het 33.25 103 14.19 0.40 +chr19 40724041 40724041 T G unknown 30.62 30 31.71 1.53 +chr19 40842355 40842355 T C het 332.58 121 33.66 2.75 +chr19 40873696 40873696 C T hom 198.68 34 21.76 5.84 +chr19 40882481 40882481 G T het 95.01 88 31.67 5.59 +chr19 40886787 40886787 G C het 96.87 116 25.68 1.13 +chr19 40929363 40929363 T C hom 152.90 46 24.97 4.37 +chr19 40978679 40978679 C T unknown 36.26 27 20.05 3.02 +chr19 41008092 41008092 G A unknown 197.79 94 32.41 2.75 +chr19 41092762 41092762 G C unknown 125.55 184 31.52 1.49 +chr19 41105219 41105219 C - het 67.43 58 21.89 1.98 +chr19 41111133 41111133 G A unknown 31.99 73 29.28 0.86 +chr19 41112500 41112500 T G het 44.10 19 21.24 3.15 +chr19 41119028 41119028 A T het 86.55 55 31.70 2.98 +chr19 41128309 41128309 C T hom 84.22 6 26.91 16.84 +chr19 41220529 41220529 C T hom 390.72 69 27.47 7.51 +chr19 41251180 41251180 T G hom 1139.07 33 38.04 34.52 +chr19 41386033 41386033 T C hom 161.39 178 10.33 1.27 +chr19 41558271 41558271 C T unknown 41.33 130 14.90 1.22 +chr19 41703660 41703660 T C het 73.01 36 25.06 2.92 +chr19 41704832 41704832 A G hom 622.26 24 28.00 25.93 +chr19 41787010 41787010 A G unknown 74.13 101 33.14 1.04 +chr19 41854269 41854269 C T het 98.68 226 31.27 0.62 +chr19 42130776 42130776 G A hom 271.52 9 33.34 30.17 +chr19 42146140 42146140 C A het 63.15 45 29.87 6.31 +chr19 42223802 42223802 A T het 407.59 165 14.55 2.47 +chr19 42312855 42312855 A G het 43.56 176 20.68 0.50 +chr19 42355743 42355743 G C het 96.08 85 30.45 2.53 +chr19 42463067 42463067 T C het 35.77 20 19.92 4.47 +chr19 42585305 42585305 G T het 127.08 132 34.17 0.96 +chr19 42719342 42719342 G C het 148.67 140 30.38 1.06 +chr19 42798400 42798400 C A het 160.79 93 22.58 1.73 +chr19 42819261 42819261 T C unknown 37.57 131 32.05 1.30 +chr19 43031459 43031459 A T het 53.42 307 16.91 0.39 +chr19 43093274 43093274 C T het 124.65 77 19.28 1.62 +chr19 43093279 43093279 C T het 68.28 87 20.09 0.78 +chr19 43381977 43381977 G C het 119.96 215 19.68 0.74 +chr19 43576008 43576008 G A unknown 65.69 339 15.94 0.39 +chr19 43863157 43863157 T C unknown 60.22 3 27.07 20.07 +chr19 43864324 43864324 T A het 143.42 97 16.10 1.48 +chr19 44098963 44098963 C G hom 275.58 50 35.69 7.87 +chr19 44128502 44128502 T G het 85.61 31 22.32 3.72 +chr19 44273516 44273516 T C hom 235.29 56 21.27 6.03 +chr19 44276019 44276019 G A het 53.14 48 23.09 1.11 +chr19 44302725 44302725 G C het 70 104 33.19 2.59 +chr19 44470420 44470420 T C hom 1723 233 15.74 7.39 +chr19 44500729 44500729 T C het 49.64 218 10.55 0.59 +chr19 44778405 44778405 A C het 608.83 161 19.09 3.78 +chr19 44807472 44807472 C A het 255.72 139 28.02 1.84 +chr19 44844572 44844572 T A unknown 54.99 366 26.21 0.62 +chr19 44981375 44981375 T C unknown 182.99 183 21.45 4.57 +chr19 45490587 45490587 G A het 40.16 137 24.65 1.22 +chr19 45515259 45515259 G C het 46.77 25 24.41 1.87 +chr19 45805708 45805708 T C unknown 48.99 175 33.08 1.11 +chr19 45922323 45922323 G T unknown 72.22 10 21.50 10.32 +chr19 45998117 45998117 C G het 110.98 55 28.72 2.85 +chr19 46002456 46002456 G T unknown 56.03 14 25.95 5.60 +chr19 46057132 46057132 G A het 116.43 45 21.50 3.64 +chr19 46088039 46088039 G C het 83.89 80 34.52 1.42 +chr19 46133251 46133251 C T unknown 933.99 103 33.34 11.97 +chr19 46198816 46198816 G C het 236.63 121 25.58 1.96 +chr19 46268934 46268934 T C unknown 56.65 88 30.54 1.49 +chr19 46274950 46274950 C G unknown 45.97 54 22.32 1.09 +chr19 46274965 46274965 A G unknown 96.31 52 19.65 2.35 +chr19 46313758 46313758 G C het 2762.58 203 33.81 13.61 +chr19 46444154 46444154 C G het 124.58 50 26.82 2.49 +chr19 46521447 46521447 G C het 226.59 76 28.85 2.98 +chr19 46546154 46546154 T C het 81.99 112 35.70 3.04 +chr19 46812486 46812486 C A het 70.82 58 26.31 2.72 +chr19 47212593 47212593 A G hom 150.70 40 20.20 5.38 +chr19 47226070 47226070 T G het 47.23 52 18.92 0.91 +chr19 47549767 47549767 A G unknown 54.99 132 31.10 1.57 +chr19 47879250 47879250 A C unknown 33.63 97 24.93 0.58 +chr19 47885180 47885180 A G hom 480.78 35 25.23 13.74 +chr19 48006816 48006816 C T het 267.58 58 28.18 4.61 +chr19 48202125 48202125 C G unknown 132.55 20 29.23 10.20 +chr19 48244045 48244045 C T het 72.40 27 21.59 4.83 +chr19 48248763 48248763 A G het 66.72 66 26.88 1.01 +chr19 48389425 48389425 A G hom 7676.01 243 33.24 31.59 +chr19 48517645 48517645 A G het 127.11 91 28.69 1.82 +chr19 48598823 48598823 A G unknown 1604.79 254 33.99 8.77 +chr19 48630701 48630702 CC - unknown 1294.75 95 30.99 18.24 +chr19 48654563 48654563 G C het 58.18 50 24.61 2.24 +chr19 48733621 48733621 A T unknown 48.79 82 31.12 1.22 +chr19 48734018 48734018 G A unknown 385.99 177 33.18 9.65 +chr19 48785770 48785770 T A het 227.58 96 27.46 2.37 +chr19 48807240 48807240 G T het 266.02 121 30.01 2.20 +chr19 48908011 48908011 G C het 90.06 159 31.83 0.77 +chr19 48950126 48950126 C A unknown 49.07 107 34.86 2.13 +chr19 48956240 48956240 G T het 232.61 63 31.41 3.69 +chr19 48967687 48967687 C A unknown 34.41 61 34.66 1.15 +chr19 48968011 48968011 C A unknown 65.91 191 33.75 0.66 +chr19 49013538 49013538 T G het 49.19 29 24.20 1.70 +chr19 49090704 49090704 A T unknown 39.47 113 31.50 0.69 +chr19 49110308 49110308 T A het 42.05 101 30.30 0.62 +chr19 49136628 49136628 T A unknown 32.01 184 24.44 0.63 +chr19 49143111 49143111 G A het 126.88 85 34.03 1.49 +chr19 49143337 49143337 A T het 37.54 137 29.46 0.37 +chr19 49261209 49261209 G C het 496.58 256 28.43 1.94 +chr19 49392867 49392867 C G het 966.79 134 34.05 9.97 +chr19 49438433 49438433 C G het 77.70 9 29.19 15.54 +chr19 49447629 49447629 T G het 110.79 149 32.57 1.73 +chr19 49474188 49474188 A C het 64.81 100 30.92 0.90 +chr19 49573363 49573365 GGA - unknown 1096.76 92 26.50 13.88 +chr19 49643254 49643254 G A het 162.26 219 30.89 0.74 +chr19 49651954 49651954 A T het 182.82 97 35.43 2.50 +chr19 49652768 49652768 G A het 72.28 33 27.83 4.25 +chr19 49674495 49674495 C A het 398.92 59 32.19 9.28 +chr19 49674774 49674774 G T het 180.58 87 29.48 2.08 +chr19 49812403 49812403 G T unknown 954.99 228 38.07 14.25 +chr19 49838971 49838971 G A het 167.20 281 35.12 0.79 +chr19 49862661 49862661 C A unknown 47.18 394 38.16 0.51 +chr19 49936220 49936220 G T het 30.11 31 26.44 0.97 +chr19 49938588 49938588 C A unknown 220 235 34.09 4.58 +chr19 49954822 49954822 G C het 240.69 109 29.96 2.21 +chr19 49979893 49979893 A G het 655.79 57 40.76 15.61 +chr19 49990060 49990060 C G het 168.81 39 33.68 5.82 +chr19 49999647 49999647 C G het 340.85 41 31.23 10.33 +chr19 50017639 50017639 A C unknown 38.56 34 30.43 2.41 +chr19 50086595 50086595 T G het 163.84 61 23.41 3.09 +chr19 50098428 50098428 A C het 40.12 27 20.27 1.67 +chr19 50124663 50124663 G A hom 144.80 18 25.35 9.05 +chr19 50161425 50161425 G C unknown 68.04 22 25.73 5.67 +chr19 50299053 50299053 C A het 43.69 26 27.80 1.68 +chr19 50302226 50302226 A T het 152.18 105 26.30 1.90 +chr19 50331741 50331741 T G unknown 33.62 77 26.91 0.82 +chr19 50363362 50363362 C T het 126.80 120 36.25 1.44 +chr19 50383636 50383636 T C unknown 88.14 91 28.51 1.80 +chr19 50384803 50384803 G T hom 86.09 28 21.78 4.30 +chr19 50387529 50387529 T C het 44.18 147 33.68 0.61 +chr19 50394482 50394482 C T het 50.79 39 18.08 1.30 +chr19 50412217 50412217 C G unknown 140.84 53 21.56 3.52 +chr19 50812312 50812312 G A het 74.05 61 25.40 3.09 +chr19 50926742 50926742 A G hom 752.39 31 29.99 24.27 +chr19 51016633 51016633 T G unknown 34.61 50 36.31 1.28 +chr19 51022001 51022001 G A het 120.66 75 30.32 1.61 +chr19 51132979 51132979 G A hom 129.73 28 13.39 4.63 +chr19 51200920 51200920 T G het 58.58 194 30.42 0.62 +chr19 51301489 51301489 A C het 846.58 202 33.74 4.19 +chr19 51363448 51363448 A G unknown 480.99 163 35.19 11.19 +chr19 51379741 51379741 T A unknown 169.69 94 28.01 3.86 +chr19 51483724 51483724 C A het 139.86 83 31.49 1.69 +chr19 51535380 51535380 A T het 44.06 12 28.08 7.34 +chr19 51633143 51633143 C T unknown 170.85 148 23.51 1.53 +chr19 51647319 51647319 C A unknown 293.79 102 23.12 4.02 +chr19 51738981 51738981 C A unknown 36.66 32 20.59 3.06 +chr19 51874950 51874950 G A het 1146.57 129 30.39 8.89 +chr19 51920613 51920613 C T het 3364.01 153 27.75 21.99 +chr19 52003058 52003058 C T hom 1343.11 51 28.60 26.34 +chr19 52048516 52048516 A T hom 49.32 12 25.12 5.48 +chr19 52249211 52249211 T G het 6278.01 244 33.16 25.73 +chr19 52447654 52447654 A C unknown 36.65 250 31.45 0.43 +chr19 52579509 52579509 T C unknown 64.01 6 29.31 16.00 +chr19 52580228 52580228 C T het 680.58 202 23.73 3.37 +chr19 52705250 52705250 T G het 215.40 138 32.63 2.03 +chr19 52938205 52938205 T G hom 106.51 23 14.91 6.66 +chr19 52941618 52941618 A C hom 1669 135 20.00 12.36 +chr19 52942244 52942244 C T het 193.65 220 16.56 0.88 +chr19 53313419 53313419 G C het 489.79 41 21.14 11.95 +chr19 53368649 53368649 A G unknown 32.15 65 13.87 0.89 +chr19 53873875 53873875 C T unknown 53.03 30 16.95 3.31 +chr19 53875523 53875523 G A unknown 32.71 106 13.11 1.02 +chr19 53995004 53995004 G A hom 140.99 230 11.85 0.70 +chr19 53995078 53995078 T G unknown 43.26 99 15.51 0.58 +chr19 54194170 54194170 G C het 81.97 144 14.29 0.57 +chr19 54216610 54216610 G T het 100.72 216 12.61 0.47 +chr19 54238193 54238193 C G hom 49.78 117 16.63 0.55 +chr19 54238208 54238208 C T unknown 219.99 154 16.49 5.95 +chr19 54385720 54385720 A T het 171.28 159 30.13 1.08 +chr19 54545390 54545390 A C unknown 79.56 186 37.94 0.82 +chr19 54545531 54545531 T C unknown 379.99 175 36.34 10.56 +chr19 54609349 54609349 A T het 352.12 102 34.16 3.45 +chr19 54664752 54664752 A C het 809.58 106 32.80 7.64 +chr19 54695720 54695720 C T het 975.79 106 37.11 12.35 +chr19 54734037 54734037 T A het 58.79 90 14.17 0.65 +chr19 54760993 54760993 G A unknown 38.12 121 30.30 0.71 +chr19 54809272 54809272 C A hom 375.50 95 16.79 3.95 +chr19 54845287 54845287 C G het 197.60 89 28.38 2.22 +chr19 55178228 55178228 C A unknown 34.33 57 14.96 1.11 +chr19 55286836 55286836 G C unknown 57.01 101 7.44 1.08 +chr19 55359404 55359404 T A unknown 238.99 502 29.06 1.85 +chr19 55361970 55361970 T G unknown 30.40 172 12.22 0.34 +chr19 55365320 55365320 G T unknown 175.87 319 10.89 0.73 +chr19 55378207 55378207 A C het 121.19 232 19.21 0.71 +chr19 55445777 55445777 C G het 45.01 101 31.62 1.67 +chr19 55447501 55447501 G A het 31.31 14 33.29 6.26 +chr19 55525894 55525894 G A hom 4021.01 240 34.48 16.75 +chr19 55710175 55710175 C T het 150.04 119 27.06 1.69 +chr19 55713420 55713420 T C unknown 32.31 54 14.70 2.31 +chr19 55865214 55865214 C G het 61.36 14 16.14 5.11 +chr19 55992887 55992887 C A het 89 81 30.72 2.17 +chr19 56009192 56009192 T - het 660.44 44 24.60 15.01 +chr19 56047448 56047448 A G hom 421.64 23 28.94 18.33 +chr19 56180307 56180307 C G unknown 338.84 25 23.25 17.83 +chr19 56185369 56185369 G A unknown 93.80 143 30.72 0.94 +chr19 56204453 56204453 C A unknown 221.31 93 30.39 2.99 +chr19 56421826 56421826 C T unknown 108.99 72 38.45 7.79 +chr19 56423893 56423893 G A unknown 623.99 279 40.47 8.79 +chr19 56511233 56511233 C T het 278.99 159 36.38 7.75 +chr19 56572875 56572875 G A het 1077.79 386 38.32 4.01 +chr19 56717194 56717194 C T het 335.79 74 29.18 6.46 +chr19 56756574 56756574 - T unknown 175.90 73 13.58 3.20 +chr19 56901620 56901620 C A het 1886.78 108 32.86 17.47 +chr19 57175156 57175156 C A het 187.40 255 31.67 0.98 +chr19 57175380 57175380 C G het 89.96 42 21.63 2.14 +chr19 57909872 57909872 G A hom 7965.01 230 38.20 34.63 +chr19 57931303 57931303 C A unknown 1472.79 248 30.54 8.14 +chr19 57986502 57986502 A C het 464.65 223 40.56 2.08 +chr19 58003728 58003728 G A hom 852.11 261 12.65 3.26 +chr19 58018848 58018848 A G hom 131.85 22 14.36 6.94 +chr19 58042487 58042487 G C unknown 42.99 193 35.18 1.10 +chr19 58067663 58067663 G A het 58.11 216 24.51 1.12 +chr19 58084930 58084930 G A unknown 412.99 151 36.27 9.18 +chr19 58152004 58152004 A G het 138.41 58 31.84 2.39 +chr19 58187727 58187727 T C unknown 38.59 122 35.72 0.51 +chr19 58193547 58193547 G C unknown 50.71 14 30.97 5.63 +chr19 58258466 58258466 G T unknown 93.78 17 21.37 7.21 +chr19 58291228 58291228 A G unknown 1129.74 92 35.34 15.91 +chr19 58421336 58421336 C G het 37.45 53 18.80 0.89 +chr19 58472703 58472703 C A het 187.60 37 26.81 5.07 +chr19 58806083 58806083 T C hom 1536.56 150 31.10 14.92 +chr19 58946056 58946056 G A het 3781.01 153 32.26 24.71 +chr19 59010996 59010996 G C unknown 79.42 113 25.21 1.28 +chr19 59011044 59011044 C A het 422.67 108 27.97 3.91 +chr19 59012840 59012840 T G unknown 143.79 65 36.91 2.88 +chr19 59060594 59060594 T C het 47.86 189 36.25 0.35 +chr19 59061776 59061776 G A het 62.89 130 34.43 0.68 +chr19 59082747 59082747 C G het 37.29 60 26.71 0.79 +chr20 334010 334010 C G unknown 38.56 57 28.19 1.48 +chr20 334116 334116 T C het 221.60 73 20.46 3.04 +chr20 1290968 1290968 C A het 277.94 37 24.58 9.58 +chr20 1293247 1293247 C T unknown 471.79 132 35.63 5.07 +chr20 1549051 1549051 G T unknown 41.92 10 28.49 13.97 +chr20 1592399 1592399 G A unknown 30.77 11 14.20 10.26 +chr20 1688836 1688836 A G hom 48.67 46 13.31 2.86 +chr20 1738519 1738519 - G hom 282.07 11 36.40 25.64 +chr20 1895686 1895686 G C het 108.19 78 23.09 2.04 +chr20 2298173 2298173 T G het 200.63 214 35.11 0.94 +chr20 2378472 2378472 A T het 88.60 35 22.55 4.66 +chr20 2474548 2474548 A T unknown 146.29 151 30.74 1.27 +chr20 2597978 2597978 G A het 916.85 62 29.12 14.79 +chr20 2840431 2840431 T G het 398.58 205 31.26 1.94 +chr20 2841866 2841866 T G het 279.93 199 28.69 1.85 +chr20 3275377 3275377 G C unknown 57.94 21 32.05 5.79 +chr20 3530061 3530061 A C unknown 84.50 66 27.61 1.84 +chr20 3674911 3674911 G C het 84.91 59 25.29 1.85 +chr20 3682210 3682210 A T het 174.94 97 29.12 2.21 +chr20 3726081 3726081 C A het 38.67 104 33.68 0.86 +chr20 3785589 3785589 G T het 118.45 92 27.47 1.29 +chr20 3845002 3845002 - AC het 289.54 121 22.94 2.39 +chr20 4770315 4770315 G C unknown 120.80 106 39.64 1.49 +chr20 4781621 4781621 G C het 45.95 86 37.29 1.12 +chr20 5530109 5530109 A C het 41.31 98 14.45 0.47 +chr20 5927218 5927218 C G hom 738.87 53 28.94 18.02 +chr20 5935385 5935385 T C hom 1104.57 68 38.26 16.24 +chr20 6012680 6012680 A T het 764.58 197 36.67 3.88 +chr20 6031335 6031335 A G het 134.79 96 34.52 2.14 +chr20 8639381 8639381 G A het 40.60 87 29.53 1.16 +chr20 8665686 8665686 C A het 243.04 205 35.36 1.66 +chr20 8703145 8703145 C G hom 473.61 70 26.84 6.77 +chr20 8741188 8741188 A G unknown 219.90 69 31.04 5.11 +chr20 10603165 10603165 T A unknown 143.18 34 27.18 15.91 +chr20 10603750 10603750 G A het 1812.79 217 37.46 11.47 +chr20 10620067 10620067 C A unknown 72.12 159 36.87 1.09 +chr20 10639063 10639063 A C het 667.58 115 31.81 5.81 +chr20 10653739 10653739 G A hom 337.19 33 25.83 12.04 +chr20 13098328 13098328 A C unknown 142.55 129 30.48 2.38 +chr20 13782196 13782196 A G unknown 45.99 132 37.07 1.35 +chr20 13839922 13839922 A C het 36.89 71 31.67 0.66 +chr20 15843451 15843451 T G het 143.40 69 23.02 2.21 +chr20 15866365 15866365 A G het 671.99 185 35.99 12.92 +chr20 15914000 15914000 T C het 539.58 133 33.64 4.06 +chr20 16223865 16223865 T C het 145.11 29 31.25 8.06 +chr20 16223922 16223922 T C het 112.08 21 34.94 8.01 +chr20 16486788 16486788 G T het 110.79 230 29.74 0.66 +chr20 16730466 16730466 T C unknown 74.47 33 31.12 4.14 +chr20 16787974 16787974 T C hom 91.67 23 12.17 4.37 +chr20 17339064 17339064 T G het 39.38 117 34.73 0.34 +chr20 17459907 17459907 T G het 38.61 119 29.23 0.68 +chr20 17474791 17474791 G A het 1017.55 201 37.64 9.42 +chr20 17607832 17607832 - CT hom 262.06 15 24.15 18.72 +chr20 18022337 18022337 C T het 157.92 64 22.20 2.47 +chr20 18297193 18297193 T C unknown 79.05 108 37.05 3.76 +chr20 18448107 18448107 T C het 146.51 69 24.05 2.12 +chr20 18460614 18460614 A T het 2384.54 101 30.11 23.61 +chr20 18470684 18470684 C A het 201.61 50 30.21 4.03 +chr20 18474566 18474566 C G het 1523.79 173 41.29 11.90 +chr20 19804592 19804592 G C unknown 41.30 31 20.39 2.43 +chr20 20139952 20139952 C - hom 3309 86 33.13 38.48 +chr20 20141596 20141596 T A unknown 40.01 6 19.41 13.34 +chr20 20599875 20599875 A C unknown 47.21 121 34.29 1.63 +chr20 20610174 20610174 C T unknown 89.21 240 33.36 0.47 +chr20 21311217 21311217 A G het 137.58 124 33.18 1.11 +chr20 21469228 21469228 G A het 42.54 45 26.40 1.93 +chr20 23334721 23334721 A T het 43.20 152 26.98 0.39 +chr20 23351002 23351002 T A het 254.79 133 29.20 2.57 +chr20 23566114 23566114 T C het 86.92 101 27.84 1.16 +chr20 23753523 23753523 A T hom 82.47 31 25.21 3.30 +chr20 23971419 23971419 G A unknown 45.27 131 7.64 0.69 +chr20 24945080 24945082 GGC - unknown 1257.75 72 34.02 21.32 +chr20 24993414 24993414 T C unknown 251.99 192 34.79 6.81 +chr20 25000529 25000529 G A het 55.01 23 29.22 2.75 +chr20 25004071 25004071 G T hom 1985.54 61 38.23 32.55 +chr20 25027526 25027526 G A het 1679.57 112 40.68 15.00 +chr20 25027630 25027630 G A het 134.34 34 19.42 3.95 +chr20 25261766 25261766 C G het 234.59 70 33.81 3.35 +chr20 25297909 25297909 G A hom 110.28 7 31.16 18.38 +chr20 25484467 25484467 C A unknown 215.71 184 26.12 1.51 +chr20 25776056 25776056 T C het 45.04 25 18.32 2.50 +chr20 26084209 26084209 C G het 32.68 200 8.15 0.18 +chr20 26258514 26258514 T G het 442.86 92 16.20 4.81 +chr20 29623049 29623049 A C het 70.59 113 15.51 1.01 +chr20 29628412 29628412 T G het 75.73 71 19.42 1.07 +chr20 29637405 29637405 A G het 88.66 103 11.65 0.86 +chr20 29652172 29652172 T C het 1988.58 245 22.28 8.12 +chr20 29873165 29873165 T C het 202.93 67 23.53 3.03 +chr20 29956599 29956599 A G unknown 91.79 76 33.59 1.67 +chr20 29978115 29978115 G A het 583.99 273 35.09 9.12 +chr20 30149536 30149536 T A het 184.59 93 37.41 1.98 +chr20 30232504 30232504 G A hom 964.57 70 27.43 13.78 +chr20 30432655 30432655 T G unknown 44.15 87 38.32 1.70 +chr20 30433071 30433071 C T unknown 46.60 113 30.16 0.90 +chr20 30534283 30534283 C T het 254.99 174 38.52 6.54 +chr20 30605811 30605811 G T het 50.91 28 26.56 2.68 +chr20 30753279 30753279 C T het 139.23 65 30.03 2.63 +chr20 31021493 31021493 G T het 862.58 244 29.11 3.54 +chr20 31022330 31022331 CC - unknown 98.78 77 23.23 1.90 +chr20 31022959 31022959 T C hom 6510.01 208 32.61 31.30 +chr20 31023757 31023757 T C het 121.18 167 31.97 0.99 +chr20 31128302 31128302 G A unknown 63.66 7 30.59 15.91 +chr20 31238690 31238690 G T het 43.83 34 23.82 1.29 +chr20 31291920 31291923 GGCA - het 1425.54 67 28.13 21.28 +chr20 31427568 31427568 G T het 117.23 354 30.20 1.35 +chr20 31584178 31584178 G A unknown 1007.79 92 39.36 15.04 +chr20 31585351 31585351 C G unknown 211.79 66 30.79 4.41 +chr20 31587752 31587752 G C unknown 77.40 16 26.88 11.06 +chr20 31626790 31626790 C G het 190.58 134 26.67 1.42 +chr20 31631909 31631909 T A het 109.81 140 30.45 1.02 +chr20 31644416 31644416 C G het 235.59 98 22.10 2.40 +chr20 31647864 31647864 C A het 396.61 47 27.11 8.44 +chr20 31651467 31651467 T C het 258.62 125 31.92 2.07 +chr20 31656573 31656573 C A het 83.17 45 33.98 1.85 +chr20 31657808 31657808 C A het 228.67 137 26.76 1.67 +chr20 31671798 31671798 T C het 149.71 37 29.47 4.05 +chr20 31688241 31688241 T C het 2251.80 110 28.55 20.47 +chr20 31828254 31828254 T C het 2015.79 192 36.20 14.30 +chr20 31894682 31894682 G C het 38.34 66 32.07 0.94 +chr20 32441389 32441389 C A het 121.22 82 27.90 1.89 +chr20 33122524 33122524 C T het 41.99 167 30.31 1.08 +chr20 33346557 33346558 TC - het 1714.54 128 32.85 13.39 +chr20 33438940 33438940 G A het 296.79 96 37.03 4.36 +chr20 33440239 33440239 G T unknown 30.71 99 32.56 0.57 +chr20 33508509 33508509 T G unknown 121.19 70 30.14 3.28 +chr20 33575973 33575973 C A het 40.33 91 18.50 0.61 +chr20 33578875 33578875 T G het 363.58 101 28.65 3.60 +chr20 33578899 33578899 T C hom 1086.15 59 25.37 18.41 +chr20 33590836 33590836 G A het 104.95 27 20.53 5.00 +chr20 33725877 33725877 C A het 234.62 116 24.08 2.02 +chr20 33872168 33872168 G T het 40.85 84 23.29 0.65 +chr20 34025660 34025660 G A het 203.19 73 31.73 3.83 +chr20 34068026 34068026 G C unknown 38.19 33 28.16 4.24 +chr20 34144817 34144817 T C het 126.73 82 30.22 1.55 +chr20 34176315 34176315 T A unknown 30.20 26 29.30 1.78 +chr20 34269850 34269850 C A het 69.87 74 27.10 1.27 +chr20 34300948 34300948 A C het 54.90 98 26.87 0.56 +chr20 34527054 34527054 T G unknown 34.99 94 37.41 1.67 +chr20 34564044 34564044 T G het 144.23 130 28.82 2.49 +chr20 34834348 34834348 G C unknown 32.13 17 26.60 6.43 +chr20 35545221 35545221 A T het 276.58 135 27.03 2.05 +chr20 35579892 35579892 G A het 197.91 150 33.62 1.32 +chr20 35752071 35752071 G T het 116.20 212 30.27 0.70 +chr20 35769592 35769592 T C hom 7215.01 194 38.27 37.19 +chr20 35929662 35929662 G A hom 168.78 52 15.41 3.25 +chr20 36149605 36149605 C A het 81.06 23 21.41 4.50 +chr20 36405682 36405682 A C het 664.58 82 29.40 8.10 +chr20 36776577 36776577 T G het 1050.58 120 31.51 8.75 +chr20 36859711 36859711 G A hom 640.47 34 27.89 18.84 +chr20 37002660 37002660 C G unknown 85.72 89 31.57 1.30 +chr20 37005369 37005369 T A het 115.98 84 17.19 1.84 +chr20 37168549 37168549 T G het 254.59 195 35.50 1.31 +chr20 37202907 37202907 T C het 77.40 150 35.02 0.75 +chr20 37396193 37396193 T G unknown 93.79 192 33.03 0.64 +chr20 37580390 37580390 C A het 185.65 213 33.98 0.87 +chr20 37601243 37601243 A G het 174 110 32.98 8.70 +chr20 39832292 39832292 C A unknown 46.22 129 34.48 0.44 +chr20 39990762 39990762 T C het 92.85 160 39.03 0.58 +chr20 39992330 39992330 C A het 143.65 52 25.91 2.76 +chr20 40714316 40714316 C T het 240.61 63 27.55 3.82 +chr20 41408918 41408918 A G het 35.07 175 36.75 0.82 +chr20 42159052 42159052 T C het 103.32 125 36.58 1.54 +chr20 42302385 42302385 T G het 103.88 123 32.48 1.12 +chr20 42826127 42826127 C A unknown 37.25 142 31.33 0.56 +chr20 42846759 42846759 C T unknown 37.01 5 20.24 7.40 +chr20 42876012 42876012 G C het 99.75 27 25.05 3.69 +chr20 42886009 42886009 G T het 554.59 58 25.06 9.56 +chr20 42966037 42966037 T G het 351.59 134 34.02 2.62 +chr20 43042402 43042402 A G het 164.59 43 28.10 3.83 +chr20 43052570 43052570 T C het 279.76 32 24.65 8.74 +chr20 43804823 43804823 A G unknown 216.99 123 32.68 6.58 +chr20 43850314 43850314 A G het 200.72 78 23.82 2.57 +chr20 43880942 43880942 T G het 49.05 55 29.11 1.96 +chr20 44119582 44119582 C T hom 374.71 25 29.27 14.99 +chr20 44170712 44170712 C A hom 2162.98 67 36.17 32.28 +chr20 44181669 44181669 A G het 1175.79 108 30.39 10.89 +chr20 44187715 44187715 T G het 63.12 94 31.08 0.96 +chr20 44439884 44439884 C G unknown 90.01 158 29.87 2.81 +chr20 44512607 44512607 A T het 49.07 139 35.93 0.70 +chr20 44515480 44515480 G C unknown 33.86 157 28.71 0.38 +chr20 44522594 44522594 A G unknown 1317.79 116 36.99 14.97 +chr20 44526736 44526736 T G het 31.75 96 33.00 0.61 +chr20 44531095 44531095 A T het 88.55 145 33.12 1.38 +chr20 44538287 44538287 G T het 31.47 137 24.73 0.34 +chr20 44574533 44574533 C T het 3059.78 128 36.74 23.90 +chr20 44596396 44596396 A T het 129.85 66 30.32 2.55 +chr20 44680476 44680476 A G het 314.60 71 29.33 4.43 +chr20 44980916 44980916 G C unknown 53.22 98 22.94 1.84 +chr20 45017945 45017945 G A unknown 78.63 85 20.27 2.31 +chr20 45113281 45113281 T C het 878.79 111 32.44 11.56 +chr20 45130407 45130407 T C unknown 632.99 239 34.16 9.74 +chr20 45212087 45212087 A T unknown 57 63 29.76 3.56 +chr20 45315539 45315539 C T het 45.91 172 30.94 0.39 +chr20 45354369 45354369 A G unknown 40.60 158 36.41 0.48 +chr20 45811788 45811788 G T het 240.76 21 32.62 14.16 +chr20 47274829 47274829 C G het 49.01 48 25.57 1.02 +chr20 47364300 47364300 A T het 81.55 79 34.07 2.27 +chr20 47841660 47841660 G T het 575.99 181 27.93 12.80 +chr20 47846705 47846705 G A het 224.67 42 26.86 5.35 +chr20 47851571 47851571 A C het 72.62 111 32.18 1.19 +chr20 47879904 47879904 C - unknown 406.79 97 27.26 5.57 +chr20 48127715 48127715 A C het 34.78 74 26.88 0.99 +chr20 48273299 48273299 T C hom 1474.99 44 34.92 33.52 +chr20 48522961 48522961 G T unknown 82.80 108 29.96 0.95 +chr20 49227602 49227602 A G het 78.48 65 27.81 1.48 +chr20 49575499 49575499 A G hom 121.43 64 26.89 1.90 +chr20 49620765 49620765 G A het 30.67 60 20.27 0.88 +chr20 49626572 49626572 G T unknown 164.55 68 38.09 5.14 +chr20 50238545 50238545 A G het 544.79 86 34.38 8.65 +chr20 50273749 50273749 G A het 208 35 33.07 8.00 +chr20 50313850 50313850 A G het 39.97 98 33.79 0.71 +chr20 51573915 51573915 C G unknown 74.21 13 25.20 14.84 +chr20 52198464 52198464 A G het 96.54 188 30.26 0.75 +chr20 52645534 52645534 T C hom 3372.01 96 35.42 35.13 +chr20 54970758 54970758 C G het 246.61 118 35.05 2.09 +chr20 55012101 55012101 G C unknown 187.83 83 28.21 2.93 +chr20 55276679 55276679 T C hom 379.33 16 31.85 23.71 +chr20 56090807 56090807 A G unknown 1470.79 284 38.38 7.11 +chr20 57016174 57016174 A T het 40.85 51 23.50 0.93 +chr20 57287464 57287464 C T het 50 133 31.79 1.28 +chr20 57430154 57430154 C A het 232.02 123 32.84 1.89 +chr20 57567047 57567047 G C unknown 40.40 159 38.51 0.59 +chr20 57570238 57570238 A G hom 91.22 14 18.84 10.14 +chr20 57766530 57766530 C G unknown 33.01 131 30.56 0.55 +chr20 57767027 57767027 A C het 47.32 25 19.07 2.49 +chr20 57767838 57767838 G T het 30.22 84 27.20 0.49 +chr20 57876792 57876792 T G het 48.76 81 31.45 0.60 +chr20 57923926 57923926 T A hom 78.22 13 16.67 13.04 +chr20 58415449 58415449 A T het 66.68 121 33.79 1.36 +chr20 58440977 58440977 T C het 203.05 41 21.65 5.21 +chr20 58445054 58445054 T A het 31.20 43 26.30 0.73 +chr20 58452996 58452996 A C het 225.64 37 22.01 6.10 +chr20 58455318 58455318 A C het 93.62 39 30.04 3.47 +chr20 58559724 58559724 A T het 114.58 194 32.23 1.59 +chr20 58883600 58883600 G C het 44.87 67 20.84 0.86 +chr20 58894327 58894327 C T het 104.99 95 31.73 5.83 +chr20 59886152 59886152 C T unknown 52.01 10 19.77 10.40 +chr20 60509249 60509249 C G het 101.88 57 28.25 2.43 +chr20 60624138 60624138 G A unknown 50.26 10 14.09 5.58 +chr20 60733639 60733639 A G het 323.94 29 37.59 12.46 +chr20 60740588 60740600 GTGCTGGGCTCGA - het 1528.15 31 26.35 58.77 +chr20 60747573 60747573 G C het 141.65 29 33.17 4.88 +chr20 60881330 60881330 G A hom 3406.01 131 31.92 26.00 +chr20 60887008 60887008 G C het 89.37 102 36.21 0.88 +chr20 60902468 60902468 G T het 60.62 59 24.23 2.53 +chr20 60963151 60963151 G T unknown 97.91 90 26.80 1.44 +chr20 61386096 61386096 C A het 257.79 160 35.48 2.18 +chr20 61441035 61441035 G A unknown 1190.56 79 30.62 18.90 +chr20 61467397 61467397 A C het 232.83 43 24.33 5.41 +chr20 61597127 61597127 C G het 72.42 58 21.46 1.25 +chr20 61598574 61598574 C T het 151.67 28 25.68 5.42 +chr20 61732486 61732486 C G hom 46.01 8 18.35 11.50 +chr20 61869607 61869607 C A hom 98.30 14 22.76 8.19 +chr20 61939482 61939482 G A hom 46.31 48 17.04 1.36 +chr20 61945237 61945237 G A unknown 63.99 79 32.80 5.33 +chr20 62059884 62059884 A T hom 39.26 8 26.73 9.82 +chr20 62187777 62187777 A C het 227.93 166 28.98 1.90 +chr20 62187785 62187785 C A het 102.55 173 30.13 1.14 +chr20 62192263 62192263 T A unknown 44.10 104 25.61 1.76 +chr20 62198581 62198581 C G unknown 69.41 37 23.29 2.24 +chr20 62223313 62223313 C A unknown 35.38 19 26.26 3.54 +chr20 62234273 62234273 A G hom 2305.78 107 29.89 21.55 +chr20 62321143 62321143 G T unknown 38.37 35 26.46 1.37 +chr20 62321474 62321474 T A het 51.49 40 27.39 1.56 +chr20 62329713 62329713 C A unknown 56.21 21 22.30 4.32 +chr20 62333502 62333502 G T unknown 114.99 116 34.30 4.26 +chr20 62550652 62550652 G A unknown 134.95 23 18.33 6.75 +chr20 62574986 62574986 G C het 209.79 68 30.40 3.89 +chr20 62591333 62591333 G C het 676.58 97 28.40 6.98 +chr20 62592663 62592663 T G het 69.28 75 32.32 2.39 +chr20 62595572 62595572 T A het 680.58 128 22.30 5.32 +chr20 62597844 62597844 G C het 108.02 317 33.54 1.50 +chr20 62599141 62599141 C T het 653.79 106 34.76 8.83 +chr20 62838878 62838878 T G het 35.66 105 21.88 0.64 +chr20 62858859 62858859 G T unknown 34.05 30 18.94 1.62 +chr20 62863696 62863696 A C het 60.81 60 24.15 1.32 +chr20 62896808 62896808 T G het 35.41 87 23.03 0.57 +chr21 9909176 9909176 C A het 358.50 88 12.49 4.07 +chr21 9912407 9912407 T G het 36.68 75 20.38 0.87 +chr21 10862853 10862853 G A unknown 173.60 202 9.32 1.55 +chr21 10942783 10942783 T G het 255.58 325 16.30 0.79 +chr21 10998086 10998086 T A hom 58.22 17 11.63 7.28 +chr21 11130245 11130245 A C hom 152.85 8 26.06 21.84 +chr21 11181099 11181099 T C het 258.62 206 17.66 1.26 +chr21 11181697 11181697 G T het 69.57 351 15.57 0.41 +chr21 14760037 14760037 G A unknown 59.24 26 20.17 3.12 +chr21 15011705 15011705 A G unknown 30.77 28 8.45 3.85 +chr21 15309613 15309613 C G hom 38.69 67 14.47 0.79 +chr21 15451051 15451051 A C hom 84.55 7 16.55 12.08 +chr21 15538794 15538794 A C het 296.72 137 32.35 2.17 +chr21 15956177 15956177 G T unknown 66.80 105 33.39 0.80 +chr21 17447161 17447161 C T unknown 33.01 96 32.84 3.30 +chr21 19629095 19629095 G C het 34.97 124 31.41 0.38 +chr21 22782661 22782661 T A unknown 79.99 210 37.15 1.18 +chr21 22839194 22839194 G C hom 154.35 12 22.68 14.03 +chr21 24474567 24474567 A - het 106.89 46 20.26 2.81 +chr21 24474978 24474978 G C hom 85.23 78 20.73 1.50 +chr21 24763160 24763160 G A unknown 67.73 40 14.17 2.71 +chr21 27130283 27130283 A T het 136.68 40 28.51 3.42 +chr21 30250382 30250382 T C hom 402.74 11 39.05 36.61 +chr21 30324644 30324644 T G unknown 778.87 68 35.40 17.31 +chr21 30338851 30338851 T G het 247.82 161 31.88 1.81 +chr21 30442475 30442475 T C hom 857.17 34 29.56 25.21 +chr21 30714598 30714598 G A unknown 104.72 43 36.50 3.38 +chr21 31973685 31973685 C T hom 1306.63 74 28.12 17.66 +chr21 32114480 32114480 G C unknown 52.16 370 6.01 0.57 +chr21 32582484 32582484 G C het 134.86 126 32.30 1.07 +chr21 33296776 33296776 T C unknown 303.19 122 34.61 3.37 +chr21 33756582 33756582 C A unknown 152.67 179 33.68 1.91 +chr21 33887131 33887131 G A hom 860.57 110 30.95 11.47 +chr21 33887209 33887209 G C het 325.10 154 30.11 2.11 +chr21 33993569 33993569 T A het 32.96 216 8.69 0.32 +chr21 34213980 34213980 A - het 193.94 62 19.27 3.96 +chr21 34640788 34640788 A G het 332.99 145 38.62 10.09 +chr21 34648808 34648808 C T het 1313.54 60 28.94 21.89 +chr21 34649081 34649081 T G het 166.11 172 32.01 1.44 +chr21 34823252 34823252 C T het 290.73 87 33.39 6.76 +chr21 34878450 34878450 A T het 290.12 26 31.82 13.82 +chr21 34883757 34883757 T G het 421.58 197 27.79 2.14 +chr21 34894643 34894643 C T het 41 61 27.80 0.95 +chr21 34923418 34923418 A C het 72.62 49 21.32 2.90 +chr21 34924117 34924117 A C unknown 52.08 252 17.22 0.27 +chr21 34954170 34954170 A G hom 346.75 26 33.42 18.25 +chr21 34956026 34956026 T A het 76.13 28 24.35 2.93 +chr21 34997087 34997087 A T het 46.79 101 26.67 0.74 +chr21 35166779 35166779 C T unknown 43.08 133 30.42 3.92 +chr21 35507878 35507878 C G het 72.70 26 23.75 2.80 +chr21 36421036 36421036 T C hom 1723.55 75 30.76 22.98 +chr21 37444973 37444973 C T het 620.79 84 30.47 11.09 +chr21 37584357 37584357 A T het 373.58 134 24.17 2.79 +chr21 37603435 37603435 G T het 464.78 53 26.98 8.77 +chr21 37664372 37664372 C T unknown 621.99 246 39.87 13.23 +chr21 37692589 37692589 A T unknown 56.26 9 30.61 8.04 +chr21 37769705 37769705 T G het 30.38 62 24.49 0.66 +chr21 38532087 38532087 G - hom 3406 81 34.89 42.05 +chr21 38539937 38539937 C A het 61.16 76 32.94 0.80 +chr21 38597984 38597984 A G het 296.58 46 29.91 6.45 +chr21 38740334 38740334 G C unknown 63.22 14 18.79 7.02 +chr21 39528616 39528616 A G het 70.67 22 36.19 14.13 +chr21 40191389 40191389 T G het 638.58 79 31.35 8.08 +chr21 40352557 40352557 T C unknown 31.02 8 17.20 10.34 +chr21 40499540 40499540 C G hom 33.38 52 12.27 0.76 +chr21 40543811 40543811 T C het 158.60 37 30.97 4.29 +chr21 40550527 40550529 GTG - het 1238.54 99 21.10 12.51 +chr21 40574305 40574305 A G het 1129.86 116 30.32 9.74 +chr21 40587049 40587049 A G hom 167.73 23 20.01 7.29 +chr21 40871810 40871810 T C het 219.99 161 34.54 6.87 +chr21 41457445 41457445 T A unknown 97.38 56 29.70 4.64 +chr21 42615293 42615293 C T het 182.99 104 36.41 6.78 +chr21 42815655 42815655 A T het 128.64 145 30.54 1.27 +chr21 42830399 42830399 A T unknown 89.55 158 28.55 1.12 +chr21 42848561 42848562 AG - hom 3192.95 66 34.81 48.38 +chr21 42860348 42860348 G T het 237.72 74 25.95 3.21 +chr21 43222779 43222779 A G hom 480.59 72 32.25 9.81 +chr21 43309409 43309409 G T het 82.47 73 26.80 1.42 +chr21 43531553 43531553 A C het 1238.58 127 32.69 9.75 +chr21 43679452 43679452 C T unknown 76.31 94 29.29 1.32 +chr21 43679513 43679513 C T het 193.99 189 37.13 5.11 +chr21 43692452 43692452 T A het 73.20 9 23.62 8.13 +chr21 43716358 43716358 C T het 299.59 174 32.66 1.72 +chr21 43733531 43733531 G A het 60.39 46 14.88 1.31 +chr21 43816195 43816195 C T unknown 181.99 240 33.75 2.89 +chr21 43962525 43962525 G T unknown 117.98 44 28.61 3.03 +chr21 43967084 43967084 T C unknown 349 59 34.61 16.62 +chr21 44188485 44188485 T A hom 645.42 19 35.39 33.97 +chr21 44329132 44329132 G A het 71.83 144 26.87 0.73 +chr21 44485610 44485610 C G het 34.66 49 22.78 0.71 +chr21 44617549 44617549 C G unknown 37.01 9 14.87 7.40 +chr21 44870150 44870150 C A het 170.28 20 25.76 10.02 +chr21 45220388 45220388 T C unknown 75.62 116 33.39 1.26 +chr21 45275903 45275903 T A unknown 73.37 47 30.48 2.72 +chr21 45389261 45389261 A G het 30.07 27 28.87 6.01 +chr21 45390700 45390700 C A het 202.67 79 23.97 2.57 +chr21 45475489 45475489 G C het 775.86 50 31.81 15.52 +chr21 45514142 45514142 G - het 1662.60 96 26.33 17.32 +chr21 45523202 45523202 A T het 219.71 68 30.90 3.23 +chr21 45540103 45540103 G A het 111.39 13 19.87 10.13 +chr21 45546023 45546023 T A het 130.84 77 26.15 2.34 +chr21 45560132 45560132 G T het 41.99 173 39.63 1.05 +chr21 45657195 45657195 A T unknown 50.28 25 31.55 4.57 +chr21 45679258 45679258 T C unknown 438.79 73 32.42 7.44 +chr21 45725715 45725715 A G het 110.73 79 31.30 3.08 +chr21 45736055 45736055 T C het 89.71 32 19.45 3.90 +chr21 45745873 45745873 C A het 36.61 44 30.88 2.15 +chr21 45844751 45844751 A G hom 294.35 22 22.89 13.38 +chr21 45876436 45876436 G T unknown 67.22 31 23.92 2.69 +chr21 46047682 46047682 T C het 132.12 318 12.83 0.55 +chr21 46086407 46086407 C T het 74.78 112 12.32 1.29 +chr21 46117596 46117596 C G hom 32.29 292 8.65 0.22 +chr21 46271452 46271452 C T het 924.58 114 30.18 8.11 +chr21 46596480 46596480 T A het 48.28 119 29.94 0.61 +chr21 46624487 46624487 T C het 190.93 98 25.49 1.95 +chr21 46895514 46895514 G T hom 81.49 32 18.93 2.55 +chr21 46952094 46952094 T C hom 55.29 30 30.08 2.51 +chr21 47334075 47334075 C G het 114.83 34 23.71 3.96 +chr21 47417303 47417303 T C het 805.58 72 33.28 11.19 +chr21 47545155 47545155 A G het 128.69 88 20.87 1.46 +chr21 47545966 47545966 C T het 255.95 102 21.25 3.55 +chr21 47616233 47616233 T C unknown 34.74 71 34.56 1.05 +chr21 47636489 47636489 C G hom 31.57 11 18.36 6.31 +chr21 47642658 47642658 T A unknown 30.78 26 27.95 1.71 +chr21 47676711 47676711 G A unknown 33.26 9 25.96 5.54 +chr21 47777063 47777063 G A het 1744.57 167 33.05 10.45 +chr21 47857036 47857036 C T het 74.27 49 19.22 2.06 +chr21 47918662 47918662 C G unknown 105.99 148 30.96 2.65 +chr21 47967065 47967065 A C het 155.97 67 29.60 3.12 +chr22 16868468 16868468 C T unknown 53.26 188 6.88 0.56 +chr22 17177693 17177693 C T hom 31.37 16 18.95 1.96 +chr22 17265194 17265194 G A unknown 1855.56 158 35.78 17.18 +chr22 17341566 17341566 T A unknown 70.68 40 27.06 3.37 +chr22 17589595 17589595 T G het 159.63 39 35.82 4.09 +chr22 17623837 17623837 A G het 232.55 62 35.26 8.02 +chr22 17624072 17624072 G A het 296.99 118 33.74 14.14 +chr22 18209657 18209657 G A unknown 477.12 113 29.71 4.22 +chr22 18300594 18300594 G A het 1041.57 53 31.72 19.65 +chr22 18354631 18354631 G T het 85.29 55 32.69 2.13 +chr22 18371971 18371971 T C het 272.89 269 36.46 1.19 +chr22 18656043 18656043 T G het 56.31 11 23.89 6.26 +chr22 18717851 18717851 C T hom 40.30 12 19.78 5.04 +chr22 18769734 18769734 G A hom 38.29 37 10.95 1.82 +chr22 18878489 18878489 C G hom 292.89 24 18.15 12.20 +chr22 18918761 18918761 C A het 130.49 72 33.53 1.81 +chr22 19130127 19130127 A C unknown 73 150 30.82 2.28 +chr22 19227027 19227027 A C unknown 30.99 100 33.68 1.41 +chr22 19420868 19420868 T C het 253.58 63 30.13 4.03 +chr22 19471609 19471609 A G hom 1353.32 52 30.17 26.03 +chr22 19902896 19902896 C T hom 177 14 26.85 16.09 +chr22 19912015 19912015 T C hom 346.48 19 27.22 18.24 +chr22 19960530 19960530 G T het 307.84 121 24.69 3.24 +chr22 19961369 19961369 C T hom 86.39 22 14.20 5.40 +chr22 19969156 19969156 A G het 210.59 91 32.49 2.31 +chr22 20100409 20100409 C T unknown 89.17 47 29.84 7.43 +chr22 20611164 20611164 C T het 41.38 14 16.56 3.45 +chr22 20800935 20800935 T G het 49.18 107 23.85 0.46 +chr22 20804350 20804350 A T hom 473.96 50 30.99 17.55 +chr22 20905354 20905354 G A unknown 35.24 29 34.70 3.92 +chr22 20929286 20929286 C G het 148 73 34.53 8.71 +chr22 20967845 20967845 T C het 142.94 54 24.15 3.76 +chr22 20977077 20977077 C A unknown 583.39 32 30.12 24.31 +chr22 21008167 21008167 A G unknown 143.81 28 31.25 7.19 +chr22 21045471 21045471 A C het 88.70 175 19.18 0.51 +chr22 21075537 21075537 A C het 790.79 134 34.11 8.32 +chr22 21096468 21096468 C A unknown 88.99 146 35.98 2.70 +chr22 21101924 21101924 T A het 105.85 133 29.58 1.06 +chr22 21104326 21104326 C G het 56.15 93 39.55 1.19 +chr22 21138181 21138181 A G het 119.62 103 25.92 1.16 +chr22 21213380 21213380 C T unknown 176.80 21 29.10 9.31 +chr22 21327747 21327747 C G het 40.93 29 31.73 1.78 +chr22 21369539 21369539 A T het 84.80 188 18.20 0.60 +chr22 21372374 21372374 G A het 432.55 134 24.82 6.76 +chr22 21480127 21480127 T G het 153.59 141 17.98 1.09 +chr22 21901347 21901347 G T hom 51.26 4 21.25 12.81 +chr22 21989071 21989071 C T unknown 140.25 165 27.99 1.08 +chr22 22036832 22036832 T C hom 66.29 17 20.23 4.42 +chr22 22313834 22313834 G A het 292.55 60 24.72 4.88 +chr22 22348732 22348732 G C het 256.65 119 29.08 2.16 +chr22 22556270 22556270 T C het 324.79 95 25.96 4.78 +chr22 22569554 22569554 C A unknown 1119.79 138 30.66 10.56 +chr22 22681935 22681935 C A unknown 37.25 126 12.34 0.38 +chr22 22724136 22724136 T - het 1371.59 106 22.97 12.94 +chr22 22764438 22764438 T A unknown 214.63 180 20.92 2.33 +chr22 22804762 22804762 G T het 34.25 67 22.04 0.63 +chr22 22869218 22869218 T C het 3595.01 156 32.37 23.04 +chr22 22892655 22892655 G A het 100.82 170 34.85 0.81 +chr22 23011026 23011026 C G het 38.89 238 19.67 0.22 +chr22 23982499 23982499 A C het 31.81 82 25.56 0.71 +chr22 24057485 24057485 C T het 96.39 30 24.26 13.77 +chr22 24123492 24123492 T G het 103.72 50 23.59 2.07 +chr22 24167689 24167689 T A het 61.58 54 34.74 3.85 +chr22 24313360 24313360 A C het 87.72 57 20.40 1.54 +chr22 24445629 24445629 T C unknown 60.23 158 32.42 1.54 +chr22 24479177 24479177 A C het 83.81 90 31.56 1.25 +chr22 24480503 24480503 G A hom 4115.01 129 32.30 31.90 +chr22 24560472 24560472 G T het 206.08 49 22.09 4.21 +chr22 24562762 24562762 A C het 203.69 55 19.99 3.70 +chr22 24580675 24580675 A C het 102.61 30 17.17 3.42 +chr22 24734417 24734417 C A unknown 96.99 235 32.21 1.62 +chr22 24939731 24939731 G T het 454.58 65 30.84 6.99 +chr22 25016523 25016523 G A het 68.04 21 17.00 5.67 +chr22 25053993 25053993 C G unknown 36.60 88 13.63 0.52 +chr22 25158326 25158326 A G hom 1516.57 87 37.95 17.43 +chr22 25264750 25264750 T G unknown 50.99 284 34.01 0.68 +chr22 25627667 25627667 C A het 312.58 139 23.11 2.25 +chr22 26040508 26040508 T C unknown 131.38 32 19.07 4.87 +chr22 26063718 26063718 G T het 177.11 62 33.06 4.54 +chr22 26181435 26181435 T G het 47.58 45 30.38 1.40 +chr22 26193824 26193824 C T het 482.58 97 34.40 4.98 +chr22 26224695 26224695 T A het 34.93 97 33.48 0.79 +chr22 26243388 26243388 T C het 157.77 151 34.93 2.05 +chr22 26273834 26273834 A C het 142.59 28 26.50 5.09 +chr22 26777951 26777951 T G het 497.99 274 42.75 8.59 +chr22 26848383 26848383 C - unknown 73.82 134 20.76 0.72 +chr22 26932379 26932379 G T het 161.58 83 22.93 1.95 +chr22 28378472 28378472 A G het 513.79 81 34.67 9.17 +chr22 28504237 28504237 C A het 96.35 79 26.64 1.42 +chr22 29412257 29412257 T C hom 38.01 10 14.56 9.50 +chr22 29449477 29449477 A G hom 928.56 85 35.55 14.51 +chr22 29628346 29628346 C T unknown 30.69 27 16.68 2.19 +chr22 29669693 29669693 T C unknown 860.79 97 33.81 11.63 +chr22 29710058 29710058 A G unknown 42.59 35 26.76 2.37 +chr22 29746253 29746253 T C hom 568.76 61 31.68 9.32 +chr22 29828532 29828532 G A unknown 69.96 24 24.89 3.89 +chr22 29904454 29904454 G C unknown 62.99 110 36.89 2.86 +chr22 29966146 29966146 C A het 155.61 74 30.39 2.10 +chr22 30198190 30198190 C G het 83.01 63 19.94 1.66 +chr22 30202984 30202984 T C unknown 71.71 24 25.59 5.52 +chr22 30412712 30412712 T A het 263.95 246 31.97 1.07 +chr22 30418149 30418149 C G het 79.84 111 30.69 1.01 +chr22 30418161 30418161 A C hom 2272.54 106 29.62 21.44 +chr22 30659878 30659878 G C het 92.63 85 21.61 2.50 +chr22 30683280 30683280 G T het 40.96 106 31.65 1.58 +chr22 30683285 30683285 C G unknown 193 111 31.68 5.85 +chr22 30738133 30738133 T G het 33.23 89 29.76 0.49 +chr22 30741034 30741034 T G unknown 80.03 237 35.20 1.40 +chr22 30741267 30741267 C G het 474.85 62 26.66 7.66 +chr22 30864897 30864897 A T hom 262.82 19 26.44 13.83 +chr22 30866380 30866380 T C hom 1696.60 66 35.32 25.71 +chr22 30975578 30975578 A T het 36.90 12 32.49 9.22 +chr22 30976661 30976661 T A het 79.02 148 28.03 0.72 +chr22 31329954 31329954 A G het 226.67 53 30.73 4.28 +chr22 31864269 31864269 C G unknown 97.99 138 27.89 3.27 +chr22 32058269 32058269 G A het 243.99 124 33.62 7.87 +chr22 32222618 32222618 G T het 55.22 57 28.80 1.17 +chr22 32302349 32302349 T A het 609.58 207 33.25 2.94 +chr22 32330188 32330188 C T het 206.79 146 29.27 1.93 +chr22 32480642 32480642 A G unknown 291.29 114 34.23 3.24 +chr22 32498216 32498216 G T unknown 71.14 148 33.80 0.61 +chr22 32500807 32500807 A C het 172.25 129 36.18 1.34 +chr22 32506143 32506143 C T unknown 588.99 163 35.78 14.37 +chr22 32554985 32554985 A G het 2440.58 196 36.36 12.45 +chr22 32579550 32579550 T C het 1578.56 101 27.78 15.63 +chr22 32651085 32651085 T G het 62.12 70 23.72 0.89 +chr22 32804117 32804117 G A het 47.01 50 34.31 1.21 +chr22 32807939 32807939 G T unknown 31.45 36 25.86 1.08 +chr22 32891368 32891368 T C het 81.25 17 24.84 6.77 +chr22 35804544 35804544 T A het 55.99 61 26.88 1.24 +chr22 35819337 35819337 G C het 78.56 116 31.58 0.87 +chr22 36123129 36123129 G A unknown 135.59 60 29.55 4.11 +chr22 36157371 36157371 G C het 232.58 90 22.93 2.58 +chr22 36623523 36623523 G T unknown 50.78 177 25.08 0.50 +chr22 36678591 36678591 A G unknown 41.48 67 24.62 4.15 +chr22 36689595 36689595 C T het 794.58 94 25.33 8.45 +chr22 36695141 36695141 T C het 111.99 119 34.21 1.29 +chr22 37196871 37196871 G A het 749.87 67 25.26 11.19 +chr22 37263455 37263455 A C het 397.58 130 35.37 3.06 +chr22 37334596 37334596 C A het 46.48 35 31.14 1.55 +chr22 37420878 37420878 T C hom 101.85 21 22.44 4.85 +chr22 37470602 37470602 G A het 31.97 45 25.19 0.91 +chr22 37603112 37603112 G A unknown 46.43 24 20.61 2.73 +chr22 37683218 37683218 A G hom 47.35 12 21.09 23.68 +chr22 37699429 37699429 G A unknown 60.40 69 27.86 2.52 +chr22 37705271 37705271 A T het 597.80 106 36.05 5.64 +chr22 37865829 37865829 C T het 170.71 26 30.39 6.57 +chr22 37892956 37892956 A - het 1187.53 104 36.54 11.42 +chr22 37900006 37900006 T C het 1372.57 96 34.84 14.30 +chr22 38044322 38044322 T A het 57.05 34 30.35 1.90 +chr22 38046033 38046033 T G het 48.57 81 26.25 0.78 +chr22 38122122 38122122 T C unknown 282.79 123 25.05 3.11 +chr22 38130550 38130550 C T hom 93.60 47 16.76 3.02 +chr22 38203789 38203789 T G unknown 34.01 8 15.63 11.34 +chr22 38211062 38211062 A T het 97.02 80 27.86 1.21 +chr22 38254790 38254790 T G het 91.17 102 28.17 1.30 +chr22 38349021 38349021 A C het 56.67 121 25.95 0.47 +chr22 38349066 38349066 C T unknown 53.37 170 34.23 1.01 +chr22 38453679 38453679 - G hom 159.30 18 15.33 10.62 +chr22 38493096 38493096 G T unknown 43.74 43 25.73 1.75 +chr22 38516884 38516884 A C het 416.58 165 33.24 2.52 +chr22 38693217 38693217 T G het 55.23 205 33.88 0.36 +chr22 38694693 38694693 G T unknown 48.99 83 28.69 2.72 +chr22 39034867 39034867 G A unknown 693.79 114 31.75 8.46 +chr22 39066820 39066820 C T unknown 1257.79 125 34.82 12.97 +chr22 39267437 39267437 G T het 112.63 49 21.92 2.30 +chr22 39381826 39381826 A G hom 177.81 111 16.41 2.12 +chr22 39496263 39496263 T C unknown 49.75 104 27.05 1.06 +chr22 39496336 39496336 G T het 631.79 167 32.54 5.26 +chr22 39715140 39715140 C T het 365.99 117 32.77 10.76 +chr22 39812874 39812874 T C het 809.58 120 29.41 6.75 +chr22 39826050 39826050 C T unknown 36 147 32.16 0.90 +chr22 40045832 40045832 A G het 121.16 42 24.80 3.67 +chr22 40055896 40055896 T C het 2229.78 116 29.79 19.22 +chr22 40073443 40073443 A C unknown 93.92 23 26.68 7.83 +chr22 40415422 40415422 T C unknown 46.44 48 26.76 1.13 +chr22 40711495 40711495 C T unknown 52 120 31.76 1.73 +chr22 40814398 40814398 A C het 86.83 62 28.92 1.93 +chr22 41645316 41645316 G T hom 61.64 39 29.07 2.68 +chr22 41652846 41652846 G T unknown 106.99 68 32.59 5.63 +chr22 41752089 41752089 C G het 48.83 27 18.45 2.22 +chr22 41969823 41969823 T G het 56.11 107 34.31 1.08 +chr22 42076381 42076381 C A hom 2631.54 99 33.40 26.58 +chr22 42280852 42280852 T C het 85.84 105 29.65 1.16 +chr22 42293140 42293140 G C het 98.16 57 24.05 8.92 +chr22 42319353 42319353 G A unknown 33.01 13 14.38 5.50 +chr22 42390465 42390465 T A het 113.59 51 24.54 2.23 +chr22 42466342 42466342 C G het 1321.58 139 22.30 9.51 +chr22 42523680 42523680 T C unknown 92.57 101 24.29 1.93 +chr22 42610895 42610895 A T het 74.55 207 39.37 0.76 +chr22 42807450 42807450 G T het 33.92 47 28.30 0.97 +chr22 42912097 42912097 C T unknown 274.99 100 30.22 10.58 +chr22 43204936 43204936 A G het 46.58 131 28.11 0.67 +chr22 43243439 43243439 A C hom 43.23 21 21.02 5.40 +chr22 43289568 43289568 A G unknown 77.57 87 33.73 1.89 +chr22 43576762 43576762 G T het 133.59 183 31.49 0.73 +chr22 44028171 44028171 C T unknown 193.22 49 36.00 6.23 +chr22 44198653 44198653 A T het 33.93 101 18.95 0.62 +chr22 44351351 44351351 T C unknown 35.77 13 16.99 17.89 +chr22 44368122 44368122 A G unknown 108.07 94 34.58 6.00 +chr22 44528855 44528855 C G het 418.58 142 34.53 2.95 +chr22 44532414 44532414 T C het 258.58 108 33.89 2.39 +chr22 45121202 45121202 G C hom 87.94 48 17.29 2.38 +chr22 45126775 45126775 T C hom 613.58 49 35.24 17.53 +chr22 45218223 45218223 C T hom 3228.29 106 34.32 30.46 +chr22 45255727 45255727 G C het 241.81 64 22.73 5.14 +chr22 45297986 45297986 C T het 437.87 61 25.97 10.95 +chr22 45682975 45682975 A G het 3233.06 116 33.94 27.87 +chr22 45745588 45745588 A T het 206.29 51 28.86 4.39 +chr22 45911993 45911993 G C hom 30.02 3 25.39 15.01 +chr22 46685808 46685809 GC - het 331.76 81 23.96 5.44 +chr22 46760663 46760663 A G het 42.87 22 29.58 4.29 +chr22 48408809 48408809 C G het 130.59 74 25.04 1.76 +chr22 48541815 48541815 G T hom 85.22 9 22.04 14.20 +chr22 48945650 48945650 G A unknown 35.25 5 28.66 11.75 +chr22 49290550 49290550 G A het 749.03 70 33.28 10.70 +chr22 49800467 49800467 G A unknown 31.02 9 13.47 3.45 +chr22 50318927 50318927 T C unknown 364.79 48 27.41 10.42 +chr22 50321037 50321037 A C unknown 60.99 171 37.93 1.74 +chr22 50356745 50356745 C A unknown 35.93 18 33.56 8.98 +chr22 50631978 50631978 G C het 32.02 86 30.81 0.78 +chr22 50649239 50649239 A C unknown 71.95 134 31.64 0.77 +chr22 50655482 50655482 C T het 141.56 68 31.85 4.29 +chr22 50658020 50658020 G A het 66.20 40 24.63 2.14 +chr22 50659573 50659573 G T unknown 34.01 248 14.32 0.58 +chr22 50660406 50660406 G C unknown 46.09 119 34.81 1.65 +chr22 50684071 50684071 A C hom 111.70 39 22.08 4.14 +chr22 50687785 50687785 C T het 32.24 53 27.77 0.92 +chr22 50704973 50704973 G A het 332.58 57 25.12 5.83 +chr22 50718387 50718387 A C hom 149.31 39 21.96 3.83 +chr22 50727309 50727309 G A het 126.59 42 28.11 3.01 +chr22 50757348 50757348 G A het 2728.54 110 31.21 24.80 +chr22 50874893 50874893 C T unknown 89.28 16 21.15 14.88 +chr22 50897996 50897996 C T het 40.37 25 20.48 2.02 +chr22 50898729 50898729 G A het 67.52 76 19.77 0.89 +chr22 50921269 50921269 G - unknown 85.66 24 21.49 4.51 +chr22 50942188 50942188 G C het 59.25 75 23.02 1.12 +chr22 50961353 50961353 T C het 37.18 51 21.63 1.49 +chr22 50967517 50967517 C T unknown 40.80 46 34.55 1.51 +chr22 50967536 50967536 T G unknown 62.44 50 34.58 1.52 +chr22 51016226 51016226 T G het 347.58 114 29.10 3.05 +chr22 51048059 51048059 A G hom 466.45 28 23.43 16.66 +chr22 51048721 51048721 G A unknown 210.99 95 30.32 12.41 +chr22 51160561 51160561 C A het 61.73 66 30.76 1.23 +chr22 51193236 51193236 T A unknown 31.25 208 8.69 0.20 +chrX 2928178 2928178 A G unknown 114.26 59 27.44 3.17 +chrX 3030877 3030877 C T unknown 76 9 24.20 15.20 +chrX 3635254 3635254 C T unknown 37.78 54 17.06 1.51 +chrX 4482666 4482666 A G unknown 124.85 9 32.50 17.84 +chrX 9659766 9659766 G A unknown 467.46 77 28.76 7.92 +chrX 9841538 9841538 G A hom 168.35 8 30.84 28.06 +chrX 10077886 10077886 A G unknown 44.99 109 32.57 2.05 +chrX 10155471 10155471 T C het 212.88 63 19.16 3.38 +chrX 12414091 12414091 G A unknown 34.12 21 20.02 11.37 +chrX 12516839 12516839 A G het 280.72 147 28.44 1.91 +chrX 12728346 12728346 T A unknown 953.11 38 33.94 31.77 +chrX 12734784 12734784 T G het 63.17 132 27.56 0.58 +chrX 13061283 13061283 T G het 44.64 135 17.79 0.60 +chrX 13626364 13626364 T A unknown 283.22 41 27.07 9.14 +chrX 14861651 14861651 A - hom 279.43 43 24.99 6.50 +chrX 14868806 14868806 A G hom 271.94 15 28.54 19.42 +chrX 14882740 14882740 A T unknown 33.39 91 36.73 1.52 +chrX 15403030 15403030 G T unknown 206.33 26 30.84 11.46 +chrX 15607650 15607650 T C hom 1849.89 86 31.65 21.51 +chrX 16915963 16915963 T A hom 87.85 22 18.40 6.27 +chrX 17746254 17746254 A T het 172.11 162 39.52 1.22 +chrX 18797074 18797074 T C unknown 48.39 73 23.22 0.81 +chrX 18824596 18824596 G A hom 890.53 162 36.71 23.43 +chrX 18942681 18942681 T A het 203.59 70 29.03 2.91 +chrX 19410683 19410683 C G het 252.72 75 28.95 3.37 +chrX 19725324 19725324 A G unknown 387.99 82 37.89 12.52 +chrX 20204461 20204461 G T unknown 799.09 63 31.42 17.37 +chrX 21874924 21874924 C G het 937.58 95 33.38 9.87 +chrX 21875044 21875044 A T het 719.58 115 34.72 6.26 +chrX 22292034 22292034 T C unknown 75.80 149 35.44 0.64 +chrX 23018254 23018254 G C het 120.84 49 28.37 2.81 +chrX 23019611 23019611 T C unknown 118.56 119 32.65 1.33 +chrX 23704459 23704459 C G het 47.33 40 25.91 2.37 +chrX 24005991 24005991 G C het 116.52 50 18.67 2.99 +chrX 24331346 24331346 T C hom 65.25 84 13.68 0.95 +chrX 24861834 24861834 T G het 51.28 28 27.98 3.66 +chrX 26158233 26158233 C A unknown 36.35 11 32.53 9.09 +chrX 29935572 29935572 T A het 88.57 36 24.18 2.53 +chrX 30577874 30577874 T C unknown 82.60 107 36.01 2.06 +chrX 30853341 30853341 A T het 162.61 130 35.24 1.25 +chrX 31090057 31090057 T G het 64.06 26 19.25 3.37 +chrX 32197017 32197017 G A unknown 38.01 5 28.60 12.67 +chrX 32223980 32223980 T C unknown 75.65 20 17.36 6.30 +chrX 34148763 34148763 G A het 39.14 107 16.50 0.48 +chrX 37587446 37587446 C G unknown 30.01 122 35.55 0.88 +chrX 37660625 37660625 T C unknown 93.55 256 38.05 0.92 +chrX 37665635 37665635 T A unknown 44.59 154 40.52 0.51 +chrX 40495933 40495933 G T het 34.81 57 27.99 0.61 +chrX 41029145 41029145 A C het 35.63 79 28.34 0.63 +chrX 41048603 41048603 T G het 91.35 130 32.38 0.70 +chrX 41078515 41078515 T G het 388.59 50 26.87 7.77 +chrX 44493009 44493009 T C hom 407.70 29 22.32 14.06 +chrX 44494916 44494916 C G het 52.51 47 24.35 1.12 +chrX 44950131 44950131 T A het 95.81 104 25.55 1.65 +chrX 46585279 46585279 A C het 39.05 44 23.60 2.06 +chrX 46951478 46951478 T G het 141.86 35 26.82 4.05 +chrX 47273058 47273058 C T unknown 36.55 62 20.95 1.66 +chrX 47306896 47306896 T C het 62.25 118 28.33 1.56 +chrX 47483800 47483800 G A hom 187.17 50 27.58 20.80 +chrX 47755234 47755234 C G het 32.14 59 32.91 0.64 +chrX 48054740 48054740 C G het 801.28 203 15.17 3.95 +chrX 48161114 48161114 G A hom 226.13 152 9.76 1.71 +chrX 48382174 48382174 G T hom 237.10 42 33.91 26.34 +chrX 48652579 48652579 G T het 35.58 80 23.37 1.11 +chrX 48664744 48664744 G A het 54.03 45 21.18 1.59 +chrX 48858733 48858733 T A unknown 64.10 40 22.34 3.77 +chrX 49034770 49034770 G T hom 41.27 23 24.81 2.58 +chrX 49065700 49065700 G A hom 224.20 40 31.30 24.91 +chrX 49068501 49068501 T G het 326.62 75 28.55 4.35 +chrX 49142803 49142803 G C unknown 96.33 21 25.41 4.82 +chrX 49454103 49454103 C T het 455.58 248 21.82 1.84 +chrX 49840556 49840556 C G unknown 39.29 115 38.34 1.16 +chrX 50085319 50085319 T C unknown 100.04 86 30.19 1.85 +chrX 50117983 50117983 A T unknown 76.36 96 29.51 1.16 +chrX 50143965 50143965 G C unknown 96.15 38 36.39 7.40 +chrX 50146143 50146143 G T het 552.58 124 25.63 4.46 +chrX 51934195 51934195 C A het 58.77 43 23.42 2.10 +chrX 53172623 53172623 C G het 47.31 101 24.39 1.08 +chrX 53631887 53631887 T G hom 64.26 13 22.64 5.84 +chrX 54264884 54264884 G C het 242.58 98 28.76 2.48 +chrX 54472668 54472668 G C hom 51.84 21 20.82 4.71 +chrX 54496361 54496361 A G het 77.19 55 23.66 1.84 +chrX 54574737 54574737 C T het 149.62 79 23.08 1.89 +chrX 54953758 54953758 G T unknown 56.32 16 22.17 3.75 +chrX 54953854 54953854 A C het 30.77 24 24.74 3.08 +chrX 54957065 54957065 T G het 39.56 70 23.66 1.47 +chrX 55661184 55661184 T A unknown 40.71 90 20.37 1.13 +chrX 56590724 56590724 A G unknown 66.38 85 30.26 0.98 +chrX 57704102 57704102 C A hom 33.21 20 19.75 4.74 +chrX 62519603 62519603 C T hom 108.41 28 16.44 3.87 +chrX 63405968 63405968 T A unknown 31.01 116 27.21 1.24 +chrX 65259893 65259893 C T hom 84.82 49 22.56 12.12 +chrX 65295287 65295287 G A unknown 186.64 69 23.04 3.89 +chrX 65393464 65393464 T C unknown 70.75 58 31.48 1.47 +chrX 67432011 67432011 G A het 428.66 37 28.20 11.59 +chrX 69510310 69510310 T A het 74.08 72 21.52 1.76 +chrX 69510335 69510335 C T unknown 89.42 31 13.44 3.44 +chrX 69572467 69572467 C T het 220.60 55 24.31 4.01 +chrX 69649378 69649378 C G het 60.96 61 33.40 1.39 +chrX 69672574 69672574 C T unknown 48.22 16 15.52 4.02 +chrX 69771946 69771946 C A het 55.58 40 32.21 2.65 +chrX 70148440 70148440 T A het 193.62 41 26.84 4.72 +chrX 70316491 70316491 C T unknown 33.68 25 29.91 2.41 +chrX 70329013 70329013 A G unknown 36.99 78 31.90 2.64 +chrX 70387152 70387152 T G het 167.83 112 36.20 2.02 +chrX 70511791 70511791 A C unknown 117.26 65 21.55 2.21 +chrX 70756087 70756087 C G het 186.79 101 38.52 2.25 +chrX 71034798 71034798 - T hom 139.98 16 18.72 11.66 +chrX 71350370 71350370 C G het 39.58 190 26.05 0.52 +chrX 71351519 71351519 C A unknown 63.22 7 20.66 12.64 +chrX 71380038 71380038 T G het 39.48 184 15.84 0.26 +chrX 71458746 71458746 T C het 39.25 14 28.12 3.93 +chrX 71494271 71494271 C G het 89.45 80 37.30 1.16 +chrX 73043817 73043817 T C unknown 314.77 39 34.69 12.59 +chrX 73051087 73051087 A T het 67.37 28 26.08 2.50 +chrX 73507264 73507264 A T unknown 131.89 121 33.10 1.37 +chrX 73962255 73962255 C T het 85.25 105 33.35 1.38 +chrX 75250038 75250038 T C unknown 55.22 21 12.97 3.25 +chrX 77275820 77275820 C G unknown 70.60 153 31.62 0.72 +chrX 77372830 77372830 A T unknown 66.83 90 25.28 1.36 +chrX 78426488 78426488 T C hom 1908.02 55 34.48 34.69 +chrX 78580039 78580039 C T hom 2096.02 130 26.04 16.12 +chrX 78618050 78618050 A G hom 1706.57 62 29.76 27.53 +chrX 79286031 79286031 T A unknown 42.30 148 28.84 1.84 +chrX 79527580 79527580 T A hom 1793.60 62 32.17 28.93 +chrX 82764247 82764247 G A het 36.12 28 24.19 2.12 +chrX 83411217 83411217 A T hom 146.29 31 26.78 4.72 +chrX 84342544 84342544 A T het 411.64 75 25.38 5.49 +chrX 84362448 84362448 T A unknown 99.60 130 33.05 1.29 +chrX 84526109 84526109 A C unknown 65.71 91 29.29 0.91 +chrX 85213901 85213901 T C unknown 46.99 134 34.43 3.92 +chrX 86054138 86054138 G C het 154.20 67 26.17 8.57 +chrX 86877451 86877451 A T het 96.85 68 22.95 1.42 +chrX 93750466 93750466 T C hom 114.89 10 21.62 12.77 +chrX 95990883 95990883 A G hom 908.28 87 34.57 17.47 +chrX 99662304 99662304 G C het 100.80 106 31.01 1.63 +chrX 100093162 100093162 G T het 77.80 88 23.14 1.30 +chrX 100212525 100212525 T C unknown 33.26 62 10.96 0.95 +chrX 100514986 100514986 G A unknown 793.99 200 36.05 11.68 +chrX 100547933 100547933 A G hom 7600.01 220 35.39 34.55 +chrX 100611928 100611928 T C het 127.74 177 31.95 1.32 +chrX 101823435 101823435 C T unknown 34.89 43 26.53 2.49 +chrX 102564670 102564670 T G het 49.73 242 21.06 0.31 +chrX 103220042 103220042 G C het 122.91 105 31.04 1.54 +chrX 103294546 103294546 G A unknown 52 199 34.00 1.24 +chrX 103359877 103359877 A C het 286.32 83 24.83 3.45 +chrX 106462267 106462267 C T hom 102.20 12 29.16 25.55 +chrX 106884382 106884382 T A het 79.38 104 33.14 2.48 +chrX 107415825 107415825 T C hom 2614.14 103 28.00 25.38 +chrX 107417708 107417708 A G het 139.62 68 26.51 2.05 +chrX 107863606 107863606 C T het 330.58 126 22.83 2.62 +chrX 108619081 108619081 G A unknown 44.03 102 30.20 1.83 +chrX 109468229 109468229 C A het 59.49 104 19.81 0.63