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| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
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HMMER3/f [3.2.1 | June 2018] NAME long.11.aln LENG 84 MAXL 179 ALPH DNA RF no MM no CONS yes CS no MAP yes DATE Tue May 28 13:12:02 2019 NSEQ 2 EFFN 2.000000 CKSUM 423631681 STATS LOCAL MSV -8.6084 0.73180 STATS LOCAL VITERBI -10.4859 0.73180 STATS LOCAL FORWARD -2.8117 0.73180 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.35581 1.49833 1.41970 1.28384 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 0.00000 * 1 1.91091 1.78233 1.95844 0.61114 1 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 2 1.91091 1.78233 1.95844 0.61114 2 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 3 0.56139 2.08489 1.86185 1.89791 3 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 4 1.97267 2.25870 0.46443 2.05625 4 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 5 1.97267 2.25870 0.46443 2.05625 5 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 6 1.98342 0.60779 2.04641 1.66785 6 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 7 1.98342 0.60779 2.04641 1.66785 7 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 8 0.56139 2.08489 1.86185 1.89791 8 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 9 1.97267 2.25870 0.46443 2.05625 9 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 10 1.91091 1.78233 1.95844 0.61114 10 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 11 0.56139 2.08489 1.86185 1.89791 11 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 12 1.97267 2.25870 0.46443 2.05625 12 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 13 1.91091 1.78233 1.95844 0.61114 13 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 14 0.56139 2.08489 1.86185 1.89791 14 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 0.51083 0.91629 15 2.01896 1.01168 2.12953 0.95527 15 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.01896 1.01168 2.12953 0.95527 16 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.28818 2.60848 2.42319 2.42940 17 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 1.08498 1.08670 1.94700 1.70340 18 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.46232 0.33808 2.58153 2.07174 19 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.31486 2.12647 2.41211 0.36768 20 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.46232 0.33808 2.58153 2.07174 21 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 1.09289 1.89038 1.88803 1.01509 22 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 1.09289 1.89038 1.88803 1.01509 23 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.46232 0.33808 2.58153 2.07174 24 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.31486 2.12647 2.41211 0.36768 25 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 1.84050 1.95342 1.03654 1.06480 26 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.46232 0.33808 2.58153 2.07174 27 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.31486 2.12647 2.41211 0.36768 28 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.38910 2.82844 0.25233 2.62837 29 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.01896 1.01168 2.12953 0.95527 30 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.31486 2.12647 2.41211 0.36768 31 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.28818 2.60848 2.42319 2.42940 32 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 1.12273 2.17004 0.88086 1.92408 33 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.28818 2.60848 2.42319 2.42940 34 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.01896 1.01168 2.12953 0.95527 35 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.84050 1.95342 1.03654 1.06480 36 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.38910 2.82844 0.25233 2.62837 37 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.46232 0.33808 2.58153 2.07174 38 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 1.08498 1.08670 1.94700 1.70340 39 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 1.12273 2.17004 0.88086 1.92408 40 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.31486 2.12647 2.41211 0.36768 41 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.01896 1.01168 2.12953 0.95527 42 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.31486 2.12647 2.41211 0.36768 43 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.28818 2.60848 2.42319 2.42940 44 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 1.12273 2.17004 0.88086 1.92408 45 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.46232 0.33808 2.58153 2.07174 46 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.28818 2.60848 2.42319 2.42940 47 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.38910 2.82844 0.25233 2.62837 48 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 1.08498 1.08670 1.94700 1.70340 49 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.28818 2.60848 2.42319 2.42940 50 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.38910 2.82844 0.25233 2.62837 51 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 1.09289 1.89038 1.88803 1.01509 52 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 1.09289 1.89038 1.88803 1.01509 53 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.38910 2.82844 0.25233 2.62837 54 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.28818 2.60848 2.42319 2.42940 55 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.38910 2.82844 0.25233 2.62837 56 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 1.84050 1.95342 1.03654 1.06480 57 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.31486 2.12647 2.41211 0.36768 58 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 1.12273 2.17004 0.88086 1.92408 59 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 1.12273 2.17004 0.88086 1.92408 60 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.31486 2.12647 2.41211 0.36768 61 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 0.28818 2.60848 2.42319 2.42940 62 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 1.08498 1.08670 1.94700 1.70340 63 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 2.31486 2.12647 2.41211 0.36768 64 t - - - 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547 65 0.56139 2.08489 1.86185 1.89791 65 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 66 1.98342 0.60779 2.04641 1.66785 66 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 67 1.91091 1.78233 1.95844 0.61114 67 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 68 1.97267 2.25870 0.46443 2.05625 68 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 69 1.97267 2.25870 0.46443 2.05625 69 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 70 1.98342 0.60779 2.04641 1.66785 70 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 71 1.98342 0.60779 2.04641 1.66785 71 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 0.51083 0.91629 72 2.31486 2.12647 2.41211 0.36768 72 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 73 0.28818 2.60848 2.42319 2.42940 73 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 74 1.12273 2.17004 0.88086 1.92408 74 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 75 1.09289 1.89038 1.88803 1.01509 75 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 76 2.31486 2.12647 2.41211 0.36768 76 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 77 2.46232 0.33808 2.58153 2.07174 77 c - - - 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547 78 1.98342 0.60779 2.04641 1.66785 78 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 79 0.56139 2.08489 1.86185 1.89791 79 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 80 1.91091 1.78233 1.95844 0.61114 80 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 81 1.97267 2.25870 0.46443 2.05625 81 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 82 1.91091 1.78233 1.95844 0.61114 82 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 83 1.97267 2.25870 0.46443 2.05625 83 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 84 1.91091 1.78233 1.95844 0.61114 84 t - - - 1.38629 1.38629 1.38629 1.38629 0.03279 3.43399 * 1.46634 0.26236 0.00000 * //