diff test-data/files/NODE_6.aln @ 0:9a3a2e04f47a draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/files/NODE_6.aln	Mon Jun 10 16:04:10 2019 -0400
@@ -0,0 +1,130 @@
+>K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1
+------------------------------------------------------------
+--------------------GATCCTGC-------------ATATAAGCAGCAGCTTTTT
+GCCTTT------------ACTGGTTCTCTCTGGTTAGACCAGATCTGAGCCTGGG-----
+------------------
+>K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1
+------------------------------------------------------------
+-------------------CAGATACCT-------------AAATGATCAACAGCTCCTG
+GGGATT-------------TGGGGTTGCTCTGGAAAACTCATTTGCACCCCTGCT-----
+------------------
+>K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1
+GTCTGG----------------------------GGCATCAAGCAGCTCCAGG-------
+CAAGAATGCTGGCTGTGGAAAGATACCT-------------AAAGGATCAACAGCTCC--
+------------------------------------------------------------
+------------------
+>K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1
+------------------------------------------------------------
+-----------ACAGTAGAAAAATTCCCCTCCACCATTAAAACTGTGGTTACAATATC--
+-------------------TGGGTCCCCTCC-------------TGAGGATTGGT-----
+------------------
+>K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1
+------------------------------------------------------------
+-----------ACAGTAGAAAAATTCCCCTCCACAATTAAAACTGTGGTTACAATTTC--
+-------------------TGGGTCCCCTCC-------------TGAGGATTGCT-----
+------------------
+>K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1
+TCCTG----------------------------------------ACTCCAA--------
+----------TACTGTAGGAGATTCCAC-----------------------CAATATT--
+-------------------TGAGGGCTTCCCACCCCCTGCGTCCCAGAAGTT--------
+------------------
+>K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1
+--------------------------------------------ATCCTCAT--------
+-----GCATCTGTTCTACCATGTCATTTTT-----------CCACATGTTAAAATTTTCT
+GT-----------------CACATTTAC---CAATACT----------------------
+------------------
+>K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1
+--------------------------------------------TT--------------
+-------GGTAAATGTGACAGAAAATTTTA-----------ACATGTGGAAAAATGACAT
+GG-----------------TAGA---AC---AGATGCA----------------------
+TGAGGATATAA-------
+>K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1
+------------------------------------------------------------
+-------GGTAAATGTGACAGAAAATTTTA-----------ACATGTGGAAAAATGACAT
+GG-----------------TAGA---AC---AGATGCA----------------------
+TGAGGATATAAT-----C
+>K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1
+------------------------------------------------------------
+------------------------------------------------TTAAAATTTTCT
+GT-----------------CACATTTAC---CAATACTACTTCTTGTGGGTTGGGGTCTG
+TGGGTACACAGGCATGTG
+>K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1
+------------------------------------------------------------
+------CACCCATCCAAAGGAATTGAGGTT-----------CTTT---CTGATGTTTTTT
+GT-----------------CTGGTGTGG---TAAGTCCCCACCTCGACAG----------
+------------------
+>K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1
+CTTTA----------------------------------TATTTTTTCTTAC--------
+-----CCCCTGGCCTTAACCGAATTTTTTC-----------CCATCGATCTAATTCTCC-
+-------------------CCCGCTTAA--------------------------------
+------------------
+>K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1
+TCC------------------------------------CTGTTCG--------------
+-------GGCGCCACTGCTAGAGATTTTCC-----------ACACTGACTAAAAGGGTCT
+GA-----------------GGGA---TCTCTAGTTACC----------------------
+------------------
+>K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1
+----------------------------------AGTAAGTAGTACCTGTAAC--GCAAC
+CTATACCAATAG-TAGCAATAGTAGCATTA-----------GTAGTAGCACTAATAAT--
+------------------------------------------------------------
+------------------
+>K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1
+--------------------------------------------------------CAAC
+CTATACCAATAG-TAGCAATAGTAGCATTA-----------GTAGTAGCAATAATAATAG
+CAATAG------------TTGAGTGGTC--------------------------------
+------------CA----
+>K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1
+ACAGTAA----TTGGAG--------------AGCAATGGCTAGTGATTTTAACCTGCCAC
+CTGTAGTAGCAA-AAGAAATAGTAGCCCG-------------------------------
+------------------------------------------------------------
+------------------
+>K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1
+------------------------------------------------------------
+-TATGGTACCAGTTAGAGAAAGAACCCCTA-----------GTAGGAGCAGAAACCTTCT
+ATGTAG------------ATGGGGCAGC--------------------------------
+------------TAACAG
+>K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1
+-------------------------------------AGTTCATGTATCCAGT-------
+---GGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGGCTGAAACAGCATAT---
+------------------------------------------------------------
+------------------
+>K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1
+ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGT-------
+---GGATATATAGAAGCAGA----------------------------------------
+------------------------------------------------------------
+------------------
+>K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1
+------------------------------------------------------------
+------TATAAAGACGCAGAAGTTATTCCAGCATACACAGGGCAGGAAACAGCATATTTT
+CTTTT--------------CAAATTAG-----------------------------CAG-
+------------------
+>K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1
+------------------------------------------------------------
+------TGCTAA-----------------------------TTTTAAAAGACAATATTCT
+GTTTC--------------CTGCCCTGTTTCTGCTGGAATAACTTCTGCTTCTATATAT-
+------------------
+>K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1
+------------------------------------------------------------
+------GCCA---CAGAGGGAGCCACACAA-----------TGAATGGACACTATAGCTT
+TTAGAG--GAGCTTAAGAATGAAGCTGTTA------------------------------
+---GA-------------
+>K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1
+------------------------------------------------------------
+------CC--------------CCATAT---------------------TACTATGCTTT
+CTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTACATCATTAG------------
+--TGT-------------
+>K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1
+------------------------------------------------------------
+--------------CAGAGGAGGTCTCT--------------------------------
+--------CGACGCAGGACTCGGCTTGCTGAAGGGCGCACGGCAAGAGGCGAGGGGCGG-
+CGACT-------------
+>K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1
+------------------------------------------------------------
+--------GGAAACCAGAGGAGCTCTCT--------------------------------
+--------CGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCG--
+------------------
+>K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1
+------------------------------------------------------------
+------TAGGAACCAAAGAAAGATAGTT--------------------------------
+--------AAGTGTTTCAATTGTGGCACAGAAGGGCACACAGCCAGAAATTGCAGG----
+------------------