Mercurial > repos > dave > pipelign
comparison test-data/files/NODE_6.aln @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:9a3a2e04f47a |
|---|---|
| 1 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1 | |
| 2 ------------------------------------------------------------ | |
| 3 --------------------GATCCTGC-------------ATATAAGCAGCAGCTTTTT | |
| 4 GCCTTT------------ACTGGTTCTCTCTGGTTAGACCAGATCTGAGCCTGGG----- | |
| 5 ------------------ | |
| 6 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1 | |
| 7 ------------------------------------------------------------ | |
| 8 -------------------CAGATACCT-------------AAATGATCAACAGCTCCTG | |
| 9 GGGATT-------------TGGGGTTGCTCTGGAAAACTCATTTGCACCCCTGCT----- | |
| 10 ------------------ | |
| 11 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1 | |
| 12 GTCTGG----------------------------GGCATCAAGCAGCTCCAGG------- | |
| 13 CAAGAATGCTGGCTGTGGAAAGATACCT-------------AAAGGATCAACAGCTCC-- | |
| 14 ------------------------------------------------------------ | |
| 15 ------------------ | |
| 16 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1 | |
| 17 ------------------------------------------------------------ | |
| 18 -----------ACAGTAGAAAAATTCCCCTCCACCATTAAAACTGTGGTTACAATATC-- | |
| 19 -------------------TGGGTCCCCTCC-------------TGAGGATTGGT----- | |
| 20 ------------------ | |
| 21 >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1 | |
| 22 ------------------------------------------------------------ | |
| 23 -----------ACAGTAGAAAAATTCCCCTCCACAATTAAAACTGTGGTTACAATTTC-- | |
| 24 -------------------TGGGTCCCCTCC-------------TGAGGATTGCT----- | |
| 25 ------------------ | |
| 26 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1 | |
| 27 TCCTG----------------------------------------ACTCCAA-------- | |
| 28 ----------TACTGTAGGAGATTCCAC-----------------------CAATATT-- | |
| 29 -------------------TGAGGGCTTCCCACCCCCTGCGTCCCAGAAGTT-------- | |
| 30 ------------------ | |
| 31 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1 | |
| 32 --------------------------------------------ATCCTCAT-------- | |
| 33 -----GCATCTGTTCTACCATGTCATTTTT-----------CCACATGTTAAAATTTTCT | |
| 34 GT-----------------CACATTTAC---CAATACT---------------------- | |
| 35 ------------------ | |
| 36 >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1 | |
| 37 --------------------------------------------TT-------------- | |
| 38 -------GGTAAATGTGACAGAAAATTTTA-----------ACATGTGGAAAAATGACAT | |
| 39 GG-----------------TAGA---AC---AGATGCA---------------------- | |
| 40 TGAGGATATAA------- | |
| 41 >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1 | |
| 42 ------------------------------------------------------------ | |
| 43 -------GGTAAATGTGACAGAAAATTTTA-----------ACATGTGGAAAAATGACAT | |
| 44 GG-----------------TAGA---AC---AGATGCA---------------------- | |
| 45 TGAGGATATAAT-----C | |
| 46 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1 | |
| 47 ------------------------------------------------------------ | |
| 48 ------------------------------------------------TTAAAATTTTCT | |
| 49 GT-----------------CACATTTAC---CAATACTACTTCTTGTGGGTTGGGGTCTG | |
| 50 TGGGTACACAGGCATGTG | |
| 51 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1 | |
| 52 ------------------------------------------------------------ | |
| 53 ------CACCCATCCAAAGGAATTGAGGTT-----------CTTT---CTGATGTTTTTT | |
| 54 GT-----------------CTGGTGTGG---TAAGTCCCCACCTCGACAG---------- | |
| 55 ------------------ | |
| 56 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1 | |
| 57 CTTTA----------------------------------TATTTTTTCTTAC-------- | |
| 58 -----CCCCTGGCCTTAACCGAATTTTTTC-----------CCATCGATCTAATTCTCC- | |
| 59 -------------------CCCGCTTAA-------------------------------- | |
| 60 ------------------ | |
| 61 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1 | |
| 62 TCC------------------------------------CTGTTCG-------------- | |
| 63 -------GGCGCCACTGCTAGAGATTTTCC-----------ACACTGACTAAAAGGGTCT | |
| 64 GA-----------------GGGA---TCTCTAGTTACC---------------------- | |
| 65 ------------------ | |
| 66 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1 | |
| 67 ----------------------------------AGTAAGTAGTACCTGTAAC--GCAAC | |
| 68 CTATACCAATAG-TAGCAATAGTAGCATTA-----------GTAGTAGCACTAATAAT-- | |
| 69 ------------------------------------------------------------ | |
| 70 ------------------ | |
| 71 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1 | |
| 72 --------------------------------------------------------CAAC | |
| 73 CTATACCAATAG-TAGCAATAGTAGCATTA-----------GTAGTAGCAATAATAATAG | |
| 74 CAATAG------------TTGAGTGGTC-------------------------------- | |
| 75 ------------CA---- | |
| 76 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1 | |
| 77 ACAGTAA----TTGGAG--------------AGCAATGGCTAGTGATTTTAACCTGCCAC | |
| 78 CTGTAGTAGCAA-AAGAAATAGTAGCCCG------------------------------- | |
| 79 ------------------------------------------------------------ | |
| 80 ------------------ | |
| 81 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1 | |
| 82 ------------------------------------------------------------ | |
| 83 -TATGGTACCAGTTAGAGAAAGAACCCCTA-----------GTAGGAGCAGAAACCTTCT | |
| 84 ATGTAG------------ATGGGGCAGC-------------------------------- | |
| 85 ------------TAACAG | |
| 86 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1 | |
| 87 -------------------------------------AGTTCATGTATCCAGT------- | |
| 88 ---GGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGGCTGAAACAGCATAT--- | |
| 89 ------------------------------------------------------------ | |
| 90 ------------------ | |
| 91 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1 | |
| 92 ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGT------- | |
| 93 ---GGATATATAGAAGCAGA---------------------------------------- | |
| 94 ------------------------------------------------------------ | |
| 95 ------------------ | |
| 96 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1 | |
| 97 ------------------------------------------------------------ | |
| 98 ------TATAAAGACGCAGAAGTTATTCCAGCATACACAGGGCAGGAAACAGCATATTTT | |
| 99 CTTTT--------------CAAATTAG-----------------------------CAG- | |
| 100 ------------------ | |
| 101 >K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1 | |
| 102 ------------------------------------------------------------ | |
| 103 ------TGCTAA-----------------------------TTTTAAAAGACAATATTCT | |
| 104 GTTTC--------------CTGCCCTGTTTCTGCTGGAATAACTTCTGCTTCTATATAT- | |
| 105 ------------------ | |
| 106 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1 | |
| 107 ------------------------------------------------------------ | |
| 108 ------GCCA---CAGAGGGAGCCACACAA-----------TGAATGGACACTATAGCTT | |
| 109 TTAGAG--GAGCTTAAGAATGAAGCTGTTA------------------------------ | |
| 110 ---GA------------- | |
| 111 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1 | |
| 112 ------------------------------------------------------------ | |
| 113 ------CC--------------CCATAT---------------------TACTATGCTTT | |
| 114 CTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTACATCATTAG------------ | |
| 115 --TGT------------- | |
| 116 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1 | |
| 117 ------------------------------------------------------------ | |
| 118 --------------CAGAGGAGGTCTCT-------------------------------- | |
| 119 --------CGACGCAGGACTCGGCTTGCTGAAGGGCGCACGGCAAGAGGCGAGGGGCGG- | |
| 120 CGACT------------- | |
| 121 >K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1 | |
| 122 ------------------------------------------------------------ | |
| 123 --------GGAAACCAGAGGAGCTCTCT-------------------------------- | |
| 124 --------CGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCG-- | |
| 125 ------------------ | |
| 126 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1 | |
| 127 ------------------------------------------------------------ | |
| 128 ------TAGGAACCAAAGAAAGATAGTT-------------------------------- | |
| 129 --------AAGTGTTTCAATTGTGGCACAGAAGGGCACACAGCCAGAAATTGCAGG---- | |
| 130 ------------------ |