Mercurial > repos > dave > pipelign
comparison test-data/files/clsReps.fas @ 0:9a3a2e04f47a draft default tip
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author | dave |
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date | Mon, 10 Jun 2019 16:04:10 -0400 |
parents | |
children |
comparison
equal
deleted
inserted
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-1:000000000000 | 0:9a3a2e04f47a |
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1 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1_1_0 | |
2 CAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACA | |
3 CCATGCTAAA | |
4 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1_2_1 | |
5 GAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCA | |
6 ATCAAATCAG | |
7 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1_3_2 | |
8 ATCCTCATGCATCTGTTCTACCATGTCATTTTTCCACATGTTAAAATTTTCTGTCACATT | |
9 TACCAATACT | |
10 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1_1_3 | |
11 CTATGTTTACTTCTAATCCCGAATCCTGCAAAGCTAGATAAATTGCTTGTAACTCAGTCT | |
12 TCTGATTTGT | |
13 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1_2_4 | |
14 CCAAGTATCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAATCCTAGG | |
15 AAAATGTCTA | |
16 >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1_1_5 | |
17 CTACTATTGCTACTAATGGTATAGGTTGCGTTACATGTACTACTTACTGCTTTGATAGAG | |
18 AAGCTTGATG | |
19 >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1_1_6 | |
20 TCTTTGCCTTGGTTGGAGCAACTCCTAATGGTTGAATTTTTACTACTTTATATTTATATA | |
21 ATTCCCTTCT | |
22 >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1_1_7 | |
23 AATAGCAATTTGTACAAGCAGTTTTAGGCTGACTTCGTGGATGCTTCCAGGGCTCTCGTC | |
24 TAGGATCAAC | |
25 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1_2_8 | |
26 ACAACGGAATTGGAGGAAATGAACCAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAG | |
27 TACTATTTTT | |
28 >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1_1_9 | |
29 AGGATTTTACATAATTGCCTTACTTAAATCCCTGGGTAAATCTGACTTGCCCAATTCAAT | |
30 TTCCCCACTA | |
31 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1_2_10 | |
32 TTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTACACCCAGTGGGGGGACAT | |
33 CAAGCAGCCA | |
34 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1_2_11 | |
35 CTACCTCTTCTTCTGCTAGACTGCCATTTAACAGCAGTTGAGTTGATACTACTGGCCTAA | |
36 TTCCATGTGT | |
37 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1_1_12 | |
38 TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCTTTTTTCTTTATGGCAAATAC | |
39 TGGAGTATTG | |
40 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1_1_13 | |
41 TGCCAAGGATCCGTTCACTAATCGAATGGATCTGTCTCTGTCTCTCTCTCCACCTTCTTC | |
42 TTCTATTCCT | |
43 >K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1_1_14 | |
44 CAGGATTAACTGCGAATCTTTCTAGCTCCCTTGTTGCCCATACTATATGTTTTAATTTAT | |
45 ATTTTTTCTT | |
46 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1_1_15 | |
47 GCTGCTCCCACCCTATCTTGTGCTGGCTCAGCTCGTCTCATTGTTTCCCTTACAGTAGGC | |
48 CATCCAATCA | |
49 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1_2_16 | |
50 ACAGTAGAAAAATTCCCCTCCACCATTAAAACTGTGGTTACAATATCTGGGTCCCCTCCT | |
51 GAGGATTGGT | |
52 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1_1_17 | |
53 AGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGAT | |
54 TAGAACATGG | |
55 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1_1_18 | |
56 GATCCTGCATATAAGCAGCAGCTTTTTGCCTTTACTGGTTCTCTCTGGTTAGACCAGATC | |
57 TGAGCCTGGG | |
58 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1_1_19 | |
59 GTACTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCACCATTATCGTTTGAGACCCAC | |
60 CTCCCAACCC | |
61 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1_2_20 | |
62 CAGAGGAGGTCTCTCGACGCAGGACTCGGCTTGCTGAAGGGCGCACGGCAAGAGGCGAGG | |
63 GGCGGCGACT | |
64 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1_1_21 | |
65 GTCTGGGGCATCAAGCAGCTCCAGGCAAGAATGCTGGCTGTGGAAAGATACCTAAAGGAT | |
66 CAACAGCTCC | |
67 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1_1_22 | |
68 TTTTTCAGTTCGCTTAGATGAAGACTTCAGGCAGTATACTGCATTTACCATACCTAGTAT | |
69 AAACAATGAG | |
70 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1_1_23 | |
71 ACAGCGACGAAGAGCTCATCAGAACAGACAGACTCATCAAGCTTCTCTATCAAAGCAGTA | |
72 AGTATTACAT | |
73 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1_1_24 | |
74 GGGGGGAACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAA | |
75 GAATTACAAA | |
76 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1_1_25 | |
77 TGCTCTGAAGAAAATTCCCTGGCCTTCCCTTGTAGTAAGGCCATATCTTCCCTAAAAAAT | |
78 TAGCCTGTCT | |
79 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1_1_26 | |
80 GGCTAATTCACTCCCAACGAAGACAAGATATCCTTGATCTGTGGATGTACCACCCACAAG | |
81 GCTACTTCCC | |
82 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1_1_27 | |
83 TGATTTGTTGTGTCAGTTAGGGTGACAACTTTTTGTGTTCCTCTATTAGTAACATATCCT | |
84 GCTTTTCCTA | |
85 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1_1_28 | |
86 TAACGCCACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAACAAGCCCCAGA | |
87 AGACGAAGGG | |
88 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1_2_29 | |
89 GTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCT | |
90 GGGACGATCT | |
91 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1_1_30 | |
92 TTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTA | |
93 ACAGTACTGG | |
94 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1_1_31 | |
95 CTCTAGTGTCCATTCATTGTGTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTC | |
96 CATCTCTCCT | |
97 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1_1_32 | |
98 AGCCATTGCTCTCCAATTACTGTGATATTTCTCATGTTCATCTTGGGCCTTAACTATTCC | |
99 ATCTAAAAAT | |
100 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1_1_33 | |
101 TGCTGCTGGCTCAGCTCGTCTCATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA | |
102 TATTGACCAC | |
103 >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1_1_34 | |
104 TCGGAGTCATTGTTGCTATTACCACCATCTTTTGTTCATAGCAGCCCTGTAATATTTGAT | |
105 TAACATCTAA | |
106 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1_1_35 | |
107 ATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAA | |
108 AAGGAAACAT | |
109 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1_1_36 | |
110 TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCTCATCCTGTCTCCTTGCCACACAA | |
111 TCATCACCTG | |
112 >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1_1_37 | |
113 ACCCATCTTATAGCAAAATCCTTTCCAAGCCCTGTCTTATTCTTCTAGGTATGTGGCGAA | |
114 TAGCTCTACA | |
115 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1_2_38 | |
116 GAGGGGGAGTTGTTGTCTGTACCCCAGACCTGAAGCTCTCTTCTTGTGGGGCTGTTGGCT | |
117 CTGGTCTGCT | |
118 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1_2_39 | |
119 TATAAAGACGCAGAAGTTATTCCAGCATACACAGGGCAGGAAACAGCATATTTTCTTTTC | |
120 AAATTAGCAG | |
121 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1_2_40 | |
122 TGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATA | |
123 CATTATTGTG | |
124 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1_1_41 | |
125 GGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAACAGTAGTGCGAAGAA | |
126 GAAAAGCAAA | |
127 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1_1_42 | |
128 AAGTGCAAGCAATCTGATTCACCCGATTTCTTCCAATTATGATGACAGGTGTAGGTCCTA | |
129 CTAATACAGT | |
130 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1_1_43 | |
131 TATGGTACCAGTTAGAGAAAGAACCCCTAGTAGGAGCAGAAACCTTCTATGTAGATGGGG | |
132 CAGCTAACAG | |
133 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1_1_44 | |
134 ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATA | |
135 TAGAAGCAGA | |
136 >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1_1_45 | |
137 TGACAGAAACCTAGTTGGTCCAAAATGCGAACCCAGATTGTAAGACAATTTTAAAAGCAT | |
138 TGGGACCAGC | |
139 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1_1_46 | |
140 GGTGATATGGGCTGATGTACCATTTGCCCCTGGATGTTCTGCACTATAGGGTAATTTTGG | |
141 CTGACCTGAT | |
142 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1_1_47 | |
143 GCCTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGAGAGCCACC | |
144 TAGCAATTCA | |
145 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1_1_48 | |
146 TCCTGACTCCAATACTGTAGGAGATTCCACCAATATTTGAGGGCTTCCCACCCCCTGCGT | |
147 CCCAGAAGTT | |
148 >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1_1_49 | |
149 ATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGA | |
150 GTAGGATGAC | |
151 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1_1_50 | |
152 CAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTT | |
153 GAGTGGTCCA | |
154 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1_2_51 | |
155 CACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGAT | |
156 ATCCTTGATC | |
157 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1_1_52 | |
158 CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAGTTAGCCAG | |
159 AGAGCTCCCA | |
160 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1_1_53 | |
161 ACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAA | |
162 TAGTAGCCCG | |
163 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1_1_54 | |
164 AATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGC | |
165 CCACACTAAT | |
166 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1_1_55 | |
167 TTAAAATTTTCTGTCACATTTACCAATACTACTTCTTGTGGGTTGGGGTCTGTGGGTACA | |
168 CAGGCATGTG | |
169 >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1_1_56 | |
170 TCCAAGCCCTGTCTTATTCTTCTAGGTATGTGGCGCATAGCTCTACAAGCTCCTTGTACT | |
171 ACTTCAATAA | |
172 >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1_1_57 | |
173 TGTGTTCAGCTGTACTATTATGGTTATAGCATTTTCCGTGAAATTGACAGATCTAATTAC | |
174 TACCTCTTCT | |
175 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1_1_58 | |
176 GATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAAAAAGTTCAGAAGTACACA | |
177 TCCCACTAGG | |
178 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1_1_59 | |
179 TCCTCTGTCGAGTAACGCCTATTCTGCTATGACGACACCCAATTCTGAAACTGGATAAAC | |
180 AGCAGTTGTT | |
181 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1_1_60 | |
182 AGTTCATGTATCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGGCTGA | |
183 AACAGCATAT | |
184 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1_1_61 | |
185 GGAGCTAGAACGATTCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACA | |
186 AATACTGGGA | |
187 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1_1_62 | |
188 AAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAA | |
189 AAAGACAGTA | |
190 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1_1_63 | |
191 AGTAAGTAGTACCTGTAACGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAG | |
192 CACTAATAAT | |
193 >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1_2_64 | |
194 CGAGCAAGCTTCACAGGAGTTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGC | |
195 GAACCCAGAT | |
196 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1_1_65 | |
197 GACCAGCAAAGCACCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACA | |
198 TAAAAGTAGT | |
199 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1_1_66 | |
200 CCCCATATTACTATGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTACA | |
201 TCATTAGTGT | |
202 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1_1_67 | |
203 CGGGCACACACTACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTC | |
204 CCTAGTTAGC | |
205 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1_1_68 | |
206 CACCCATCCAAAGGAATTGAGGTTCTTTCTGATGTTTTTTGTCTGGTGTGGTAAGTCCCC | |
207 ACCTCGACAG | |
208 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1_2_69 | |
209 TTTTATGGTTCATAATCCACTCCATGTACTGGTTCTTTTAGAATCTCTCATTTTTCTGCC | |
210 CGTTCTAGCT | |
211 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1_1_70 | |
212 CTTTATATTTTTTCTTACCCCCTGGCCTTAACCGAATTTTTTCCCATCGATCTAATTCTC | |
213 CCCCGCTTAA | |
214 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1_1_71 | |
215 TAGGAACCAAAGAAAGATAGTTAAGTGTTTCAATTGTGGCACAGAAGGGCACACAGCCAG | |
216 AAATTGCAGG | |
217 >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1_1_72 | |
218 TCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTCTTATGTCCAGAATGCTGGTAGGG | |
219 CTATACATTC | |
220 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1_1_73 | |
221 ATAGAGCTTCCTTTAGTTGCCCCCCTATCTTTATTGTGACGAGGGGACGTTGCCAAAGAG | |
222 TGACCTGAGG | |
223 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1_1_74 | |
224 GAAGTCTTGAGTTCTCTTATTAAGTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACT | |
225 GTCTTTTTTC | |
226 >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1_1_75 | |
227 TTTGATTGACTAACTCTGATTCACTTTGATCTTGTAGTGCTTGAATGATTCCTAATGCAT | |
228 ATTGTGAGTC | |
229 >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1_1_76 | |
230 ACTTTATATTTATATAATTCACTTCTCCAATTGTCCCTCATCTCTCCTCCTCCAGGTCTG | |
231 AAGATCTCGG | |
232 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1_1_77 | |
233 AGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGTAGCCAGTAGATCCTAGACT | |
234 ATAGCCCTGG | |
235 >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1_1_78 | |
236 CTTCTTCTGTTAGTGGTATTACTTCTGTTAGTGCTTTGGTACCTCTAAGGAGTTTACATA | |
237 ATTGCCTTAC | |
238 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1_1_79 | |
239 AAGCTTGTGTAATTGTTAATTTCTCTGTCCCACTCCATCCAGGTCGTGTGATTCCAACTC | |
240 TGTTCCAGAG | |
241 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1_1_80 | |
242 TCCCTGTTCGGGCGCCACTGCTAGAGATTTTCCACACTGACTAAAAGGGTCTGAGGGATC | |
243 TCTAGTTACC | |
244 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1_1_81 | |
245 GCCACAGAGGGAGCCACACAATGAATGGACACTATAGCTTTTAGAGGAGCTTAAGAATGA | |
246 AGCTGTTAGA | |
247 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1_1_82 | |
248 CAGATACCTAAATGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTG | |
249 CACCCCTGCT | |
250 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1_1_83 | |
251 AATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGCAGGAAGCAACCACCACTCTAT | |
252 TTTGTGCATC |