diff test-data/files/clsReps.fas @ 0:9a3a2e04f47a draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/files/clsReps.fas	Mon Jun 10 16:04:10 2019 -0400
@@ -0,0 +1,252 @@
+>K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1_1_0
+CAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACA
+CCATGCTAAA
+>K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1_2_1
+GAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCA
+ATCAAATCAG
+>K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1_3_2
+ATCCTCATGCATCTGTTCTACCATGTCATTTTTCCACATGTTAAAATTTTCTGTCACATT
+TACCAATACT
+>K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1_1_3
+CTATGTTTACTTCTAATCCCGAATCCTGCAAAGCTAGATAAATTGCTTGTAACTCAGTCT
+TCTGATTTGT
+>K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1_2_4
+CCAAGTATCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAATCCTAGG
+AAAATGTCTA
+>K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1_1_5
+CTACTATTGCTACTAATGGTATAGGTTGCGTTACATGTACTACTTACTGCTTTGATAGAG
+AAGCTTGATG
+>K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1_1_6
+TCTTTGCCTTGGTTGGAGCAACTCCTAATGGTTGAATTTTTACTACTTTATATTTATATA
+ATTCCCTTCT
+>K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1_1_7
+AATAGCAATTTGTACAAGCAGTTTTAGGCTGACTTCGTGGATGCTTCCAGGGCTCTCGTC
+TAGGATCAAC
+>K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1_2_8
+ACAACGGAATTGGAGGAAATGAACCAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAG
+TACTATTTTT
+>K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1_1_9
+AGGATTTTACATAATTGCCTTACTTAAATCCCTGGGTAAATCTGACTTGCCCAATTCAAT
+TTCCCCACTA
+>K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1_2_10
+TTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTACACCCAGTGGGGGGACAT
+CAAGCAGCCA
+>K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1_2_11
+CTACCTCTTCTTCTGCTAGACTGCCATTTAACAGCAGTTGAGTTGATACTACTGGCCTAA
+TTCCATGTGT
+>K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1_1_12
+TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCTTTTTTCTTTATGGCAAATAC
+TGGAGTATTG
+>K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1_1_13
+TGCCAAGGATCCGTTCACTAATCGAATGGATCTGTCTCTGTCTCTCTCTCCACCTTCTTC
+TTCTATTCCT
+>K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1_1_14
+CAGGATTAACTGCGAATCTTTCTAGCTCCCTTGTTGCCCATACTATATGTTTTAATTTAT
+ATTTTTTCTT
+>K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1_1_15
+GCTGCTCCCACCCTATCTTGTGCTGGCTCAGCTCGTCTCATTGTTTCCCTTACAGTAGGC
+CATCCAATCA
+>K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1_2_16
+ACAGTAGAAAAATTCCCCTCCACCATTAAAACTGTGGTTACAATATCTGGGTCCCCTCCT
+GAGGATTGGT
+>K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1_1_17
+AGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGAT
+TAGAACATGG
+>K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1_1_18
+GATCCTGCATATAAGCAGCAGCTTTTTGCCTTTACTGGTTCTCTCTGGTTAGACCAGATC
+TGAGCCTGGG
+>K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1_1_19
+GTACTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCACCATTATCGTTTGAGACCCAC
+CTCCCAACCC
+>K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1_2_20
+CAGAGGAGGTCTCTCGACGCAGGACTCGGCTTGCTGAAGGGCGCACGGCAAGAGGCGAGG
+GGCGGCGACT
+>K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1_1_21
+GTCTGGGGCATCAAGCAGCTCCAGGCAAGAATGCTGGCTGTGGAAAGATACCTAAAGGAT
+CAACAGCTCC
+>K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1_1_22
+TTTTTCAGTTCGCTTAGATGAAGACTTCAGGCAGTATACTGCATTTACCATACCTAGTAT
+AAACAATGAG
+>K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1_1_23
+ACAGCGACGAAGAGCTCATCAGAACAGACAGACTCATCAAGCTTCTCTATCAAAGCAGTA
+AGTATTACAT
+>K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1_1_24
+GGGGGGAACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAA
+GAATTACAAA
+>K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1_1_25
+TGCTCTGAAGAAAATTCCCTGGCCTTCCCTTGTAGTAAGGCCATATCTTCCCTAAAAAAT
+TAGCCTGTCT
+>K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1_1_26
+GGCTAATTCACTCCCAACGAAGACAAGATATCCTTGATCTGTGGATGTACCACCCACAAG
+GCTACTTCCC
+>K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1_1_27
+TGATTTGTTGTGTCAGTTAGGGTGACAACTTTTTGTGTTCCTCTATTAGTAACATATCCT
+GCTTTTCCTA
+>K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1_1_28
+TAACGCCACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAACAAGCCCCAGA
+AGACGAAGGG
+>K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1_2_29
+GTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCT
+GGGACGATCT
+>K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1_1_30
+TTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTA
+ACAGTACTGG
+>K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1_1_31
+CTCTAGTGTCCATTCATTGTGTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTC
+CATCTCTCCT
+>K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1_1_32
+AGCCATTGCTCTCCAATTACTGTGATATTTCTCATGTTCATCTTGGGCCTTAACTATTCC
+ATCTAAAAAT
+>K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1_1_33
+TGCTGCTGGCTCAGCTCGTCTCATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA
+TATTGACCAC
+>K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1_1_34
+TCGGAGTCATTGTTGCTATTACCACCATCTTTTGTTCATAGCAGCCCTGTAATATTTGAT
+TAACATCTAA
+>K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1_1_35
+ATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAA
+AAGGAAACAT
+>K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1_1_36
+TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCTCATCCTGTCTCCTTGCCACACAA
+TCATCACCTG
+>K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1_1_37
+ACCCATCTTATAGCAAAATCCTTTCCAAGCCCTGTCTTATTCTTCTAGGTATGTGGCGAA
+TAGCTCTACA
+>K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1_2_38
+GAGGGGGAGTTGTTGTCTGTACCCCAGACCTGAAGCTCTCTTCTTGTGGGGCTGTTGGCT
+CTGGTCTGCT
+>K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1_2_39
+TATAAAGACGCAGAAGTTATTCCAGCATACACAGGGCAGGAAACAGCATATTTTCTTTTC
+AAATTAGCAG
+>K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1_2_40
+TGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATA
+CATTATTGTG
+>K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1_1_41
+GGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAACAGTAGTGCGAAGAA
+GAAAAGCAAA
+>K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1_1_42
+AAGTGCAAGCAATCTGATTCACCCGATTTCTTCCAATTATGATGACAGGTGTAGGTCCTA
+CTAATACAGT
+>K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1_1_43
+TATGGTACCAGTTAGAGAAAGAACCCCTAGTAGGAGCAGAAACCTTCTATGTAGATGGGG
+CAGCTAACAG
+>K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1_1_44
+ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATA
+TAGAAGCAGA
+>K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1_1_45
+TGACAGAAACCTAGTTGGTCCAAAATGCGAACCCAGATTGTAAGACAATTTTAAAAGCAT
+TGGGACCAGC
+>K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1_1_46
+GGTGATATGGGCTGATGTACCATTTGCCCCTGGATGTTCTGCACTATAGGGTAATTTTGG
+CTGACCTGAT
+>K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1_1_47
+GCCTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGAGAGCCACC
+TAGCAATTCA
+>K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1_1_48
+TCCTGACTCCAATACTGTAGGAGATTCCACCAATATTTGAGGGCTTCCCACCCCCTGCGT
+CCCAGAAGTT
+>K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1_1_49
+ATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGA
+GTAGGATGAC
+>K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1_1_50
+CAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTT
+GAGTGGTCCA
+>K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1_2_51
+CACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGAT
+ATCCTTGATC
+>K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1_1_52
+CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAGTTAGCCAG
+AGAGCTCCCA
+>K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1_1_53
+ACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAA
+TAGTAGCCCG
+>K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1_1_54
+AATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGC
+CCACACTAAT
+>K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1_1_55
+TTAAAATTTTCTGTCACATTTACCAATACTACTTCTTGTGGGTTGGGGTCTGTGGGTACA
+CAGGCATGTG
+>K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1_1_56
+TCCAAGCCCTGTCTTATTCTTCTAGGTATGTGGCGCATAGCTCTACAAGCTCCTTGTACT
+ACTTCAATAA
+>K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1_1_57
+TGTGTTCAGCTGTACTATTATGGTTATAGCATTTTCCGTGAAATTGACAGATCTAATTAC
+TACCTCTTCT
+>K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1_1_58
+GATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAAAAAGTTCAGAAGTACACA
+TCCCACTAGG
+>K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1_1_59
+TCCTCTGTCGAGTAACGCCTATTCTGCTATGACGACACCCAATTCTGAAACTGGATAAAC
+AGCAGTTGTT
+>K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1_1_60
+AGTTCATGTATCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGGCTGA
+AACAGCATAT
+>K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1_1_61
+GGAGCTAGAACGATTCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACA
+AATACTGGGA
+>K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1_1_62
+AAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAA
+AAAGACAGTA
+>K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1_1_63
+AGTAAGTAGTACCTGTAACGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAG
+CACTAATAAT
+>K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1_2_64
+CGAGCAAGCTTCACAGGAGTTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGC
+GAACCCAGAT
+>K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1_1_65
+GACCAGCAAAGCACCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACA
+TAAAAGTAGT
+>K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1_1_66
+CCCCATATTACTATGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTACA
+TCATTAGTGT
+>K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1_1_67
+CGGGCACACACTACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTC
+CCTAGTTAGC
+>K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1_1_68
+CACCCATCCAAAGGAATTGAGGTTCTTTCTGATGTTTTTTGTCTGGTGTGGTAAGTCCCC
+ACCTCGACAG
+>K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1_2_69
+TTTTATGGTTCATAATCCACTCCATGTACTGGTTCTTTTAGAATCTCTCATTTTTCTGCC
+CGTTCTAGCT
+>K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1_1_70
+CTTTATATTTTTTCTTACCCCCTGGCCTTAACCGAATTTTTTCCCATCGATCTAATTCTC
+CCCCGCTTAA
+>K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1_1_71
+TAGGAACCAAAGAAAGATAGTTAAGTGTTTCAATTGTGGCACAGAAGGGCACACAGCCAG
+AAATTGCAGG
+>K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1_1_72
+TCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTCTTATGTCCAGAATGCTGGTAGGG
+CTATACATTC
+>K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1_1_73
+ATAGAGCTTCCTTTAGTTGCCCCCCTATCTTTATTGTGACGAGGGGACGTTGCCAAAGAG
+TGACCTGAGG
+>K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1_1_74
+GAAGTCTTGAGTTCTCTTATTAAGTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACT
+GTCTTTTTTC
+>K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1_1_75
+TTTGATTGACTAACTCTGATTCACTTTGATCTTGTAGTGCTTGAATGATTCCTAATGCAT
+ATTGTGAGTC
+>K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1_1_76
+ACTTTATATTTATATAATTCACTTCTCCAATTGTCCCTCATCTCTCCTCCTCCAGGTCTG
+AAGATCTCGG
+>K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1_1_77
+AGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGTAGCCAGTAGATCCTAGACT
+ATAGCCCTGG
+>K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1_1_78
+CTTCTTCTGTTAGTGGTATTACTTCTGTTAGTGCTTTGGTACCTCTAAGGAGTTTACATA
+ATTGCCTTAC
+>K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1_1_79
+AAGCTTGTGTAATTGTTAATTTCTCTGTCCCACTCCATCCAGGTCGTGTGATTCCAACTC
+TGTTCCAGAG
+>K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1_1_80
+TCCCTGTTCGGGCGCCACTGCTAGAGATTTTCCACACTGACTAAAAGGGTCTGAGGGATC
+TCTAGTTACC
+>K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1_1_81
+GCCACAGAGGGAGCCACACAATGAATGGACACTATAGCTTTTAGAGGAGCTTAAGAATGA
+AGCTGTTAGA
+>K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1_1_82
+CAGATACCTAAATGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTG
+CACCCCTGCT
+>K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1_1_83
+AATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGCAGGAAGCAACCACCACTCTAT
+TTTGTGCATC