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annotate test-data/files/NODE_21.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1
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2 ------------------------------------------------------------
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3 --GATCCTGC-------------ATATAAGCAGCAGCTTTTTGCCTTTACTGGTTCTCTC
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4 TGGTTAGACCAGATCTGAGCCTGGG-----------------------
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5 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1
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6 ------------------------------------------------------------
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7 -CAGATACCT-------------AAATGATCAACAGCTCCTGGGGATT-TGGGGTTGCTC
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8 TGGAAAACTCATTTGCACCCCTGCT-----------------------
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9 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1
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10 GTCTGG----------GGCATCAAGCAGCTCCAGG-------CAAGAATGCTGGCTGTGG
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11 AAAGATACCT-------------AAAGGATCAACAGCTCC--------------------
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12 ------------------------------------------------
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13 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1
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14 -----------------------------------------------------ACAGTAG
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15 AAAAATTCCCCTCCACCATTAAAACTGTGGTTACAATATC---------TGGGTCCCCTC
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16 C-------------TGAGGATTGGT-----------------------
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17 >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1
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18 -----------------------------------------------------ACAGTAG
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19 AAAAATTCCCCTCCACAATTAAAACTGTGGTTACAATTTC---------TGGGTCCCCTC
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20 C-------------TGAGGATTGCT-----------------------
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21 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1
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22 TCCTG----------------------ACTCCAA------------------TACTGTAG
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23 GAGATTCCAC-----------------------CAATATT---------TGAGGGCTTCC
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24 CACCCCCTGCGTCCCAGAAGTT--------------------------
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25 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1
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26 --------------------------ATCCTCAT-------------GCATCTGTTCTAC
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27 CATGTCATTTTT-----------CCACATGTTAAAATTTTCTGT-----CACATTTAC--
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28 -CAATACT----------------------------------------
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29 >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1
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30 --------------------------TT---------------------GGTAAATGTGA
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31 CAGAAAATTTTA-----------ACATGTGGAAAAATGACATGG-----TAGA---AC--
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32 -AGATGCA----------------------TGAGGATATAA-------
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33 >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1
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34 -------------------------------------------------GGTAAATGTGA
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35 CAGAAAATTTTA-----------ACATGTGGAAAAATGACATGG-----TAGA---AC--
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36 -AGATGCA----------------------TGAGGATATAAT-----C
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37 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1
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38 ------------------------------------------------------------
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39 ------------------------------TTAAAATTTTCTGT-----CACATTTAC--
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40 -CAATACTACTTCTTGTGGGTTGGGGTCTGTGGGTACACAGGCATGTG
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41 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1
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42 ------------------------------------------------CACCCATCCAAA
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43 GGAATTGAGGTT-----------CTTT---CTGATGTTTTTTGT-----CTGGTGTGG--
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44 -TAAGTCCCCACCTCGACAG----------------------------
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45 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1
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46 CTTTA----------------TATTTTTTCTTAC-------------CCCCTGGCCTTAA
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47 CCGAATTTTTTC-----------CCATCGATCTAATTCTCC--------CCCGCTTAA--
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48 ------------------------------------------------
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49 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1
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50 TCC------------------CTGTTCG---------------------GGCGCCACTGC
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51 TAGAGATTTTCC-----------ACACTGACTAAAAGGGTCTGA-----GGGA---TCTC
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52 TAGTTACC----------------------------------------
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53 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1
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54 ----------------AGTAAGTAGTACCTGTAAC--GCAACCTATACCAATAG-TAGCA
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55 ATAGTAGCATTA-----------GTAGTAGCACTAATAAT--------------------
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56 ------------------------------------------------
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57 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1
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58 --------------------------------------CAACCTATACCAATAG-TAGCA
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59 ATAGTAGCATTA-----------GTAGTAGCAATAATAATAGCAATAGTTGAGTGGTC--
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60 ------------------------------------------CA----
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61 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1
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62 ACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAA-AAGAA
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63 ATAGTAGCCCG-------------------------------------------------
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64 ------------------------------------------------
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65 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1
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66 -------------------------------------------TATGGTACCAGTTAGAG
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67 AAAGAACCCCTA-----------GTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGC--
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68 ------------------------------------------TAACAG