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annotate test-data/files/NODE_10.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1
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2 ---------------------------------TTATCAGAAGG----------------
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3 AGCCACCCCACAAGATTTAAAC--ACCATGCTACACCC-------AGTGGGGGGACATCA
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4 AGCAGCCA--
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5 >K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1
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6 -----------------------GTTTTCAGCATTATCAGAAGG----------------
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7 AGCCACCCCACAAGATTTAAAC--ACCATGCTAAACAC-------AGTGGGGGGACAT--
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8 ----------
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9 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1
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10 -------CAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGG----------------
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11 AGCCACCCCACAAGATTTAAAC--ACCATGCTAAA-------------------------
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12 ----------
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13 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1
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14 -------TGT-------------AACACCTCAGTCATTA------CACAGGCCTGTCCAA
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15 AGGTATCCTTTGAGCCAATTCC--CATACATTATTGTG----------------------
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16 ----------
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17 >K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1
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18 -------ATG-------------TATG---------------------GGAATTGGCTGA
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19 AAGGATACCTTTGGACAGGCCT--GAGTAATGACTGAGGTGTTACAA---------CTTG
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20 TC--------
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21 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1
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22 -------AA--------------GCTTGTGTAATTGTTAATTTC---TCTGTCCCACTCC
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23 ATCCAGGTCGTGTGATTCCAAC--TCTGTTCCAG--------------------------
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24 AG--------
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25 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1
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26 -------AA--------------AATTTCAAA----------------------------
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27 AATTGGGCCTGAAAATCCATAC--AATACTCCAGTATT-TGCCATAAAGAAAAAAGACAG
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28 TA--------
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29 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1
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30 -------GC--------------CTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAG
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31 AGTGGAGGTTTGAGAGCCACCT--AGCAATTCA---------------------------
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32 ----------
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33 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1
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34 -------GTA-------------CTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCAC
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35 CATTATCGTTTGAGACCCACCT--CCCAACCC----------------------------
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36 ----------
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37 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1
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38 -----------------------------GGT----------------------------
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39 GATATGGGCTGATGTACCATTT--GCCCCTGGATGTTC-TGCACTATAGGGTAATTTTGG
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40 CTGACCTGAT
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41 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1
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42 -------ATAGAG----------CTTCCTTTAGTTGCCCCCCTATCTTTATTGTGACGAG
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43 GGGACGTTGCCAAAGAGTGACC--TG--------------------------AGG-----
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44 ----------
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45 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1
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46 -------------------------------------------TTTTTCAGTTCGCTTAG
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47 ATGAAGACTTCAGGCAGTATAC--TGCATTTACCATACCTAGTATAAACAATGAG-----
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48 ----------
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49 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1
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50 ATAACCACAGAA-----------------AGCATAGTAATATGG----------------
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51 GGAAAGACTCCTAAATTTAAACTGCCCATACAAAA---------------GGAAACAT--
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52 ----------