Mercurial > repos > dave > pipelign
diff test-data/files/NODE_10.aln @ 0:9a3a2e04f47a draft default tip
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author | dave |
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date | Mon, 10 Jun 2019 16:04:10 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/files/NODE_10.aln Mon Jun 10 16:04:10 2019 -0400 @@ -0,0 +1,52 @@ +>K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1 +---------------------------------TTATCAGAAGG---------------- +AGCCACCCCACAAGATTTAAAC--ACCATGCTACACCC-------AGTGGGGGGACATCA +AGCAGCCA-- +>K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1 +-----------------------GTTTTCAGCATTATCAGAAGG---------------- +AGCCACCCCACAAGATTTAAAC--ACCATGCTAAACAC-------AGTGGGGGGACAT-- +---------- +>K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1 +-------CAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGG---------------- +AGCCACCCCACAAGATTTAAAC--ACCATGCTAAA------------------------- +---------- +>K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1 +-------TGT-------------AACACCTCAGTCATTA------CACAGGCCTGTCCAA +AGGTATCCTTTGAGCCAATTCC--CATACATTATTGTG---------------------- +---------- +>K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1 +-------ATG-------------TATG---------------------GGAATTGGCTGA +AAGGATACCTTTGGACAGGCCT--GAGTAATGACTGAGGTGTTACAA---------CTTG +TC-------- +>K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1 +-------AA--------------GCTTGTGTAATTGTTAATTTC---TCTGTCCCACTCC +ATCCAGGTCGTGTGATTCCAAC--TCTGTTCCAG-------------------------- +AG-------- +>K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1 +-------AA--------------AATTTCAAA---------------------------- +AATTGGGCCTGAAAATCCATAC--AATACTCCAGTATT-TGCCATAAAGAAAAAAGACAG +TA-------- +>K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1 +-------GC--------------CTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAG +AGTGGAGGTTTGAGAGCCACCT--AGCAATTCA--------------------------- +---------- +>K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1 +-------GTA-------------CTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCAC +CATTATCGTTTGAGACCCACCT--CCCAACCC---------------------------- +---------- +>K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1 +-----------------------------GGT---------------------------- +GATATGGGCTGATGTACCATTT--GCCCCTGGATGTTC-TGCACTATAGGGTAATTTTGG +CTGACCTGAT +>K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1 +-------ATAGAG----------CTTCCTTTAGTTGCCCCCCTATCTTTATTGTGACGAG +GGGACGTTGCCAAAGAGTGACC--TG--------------------------AGG----- +---------- +>K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1 +-------------------------------------------TTTTTCAGTTCGCTTAG +ATGAAGACTTCAGGCAGTATAC--TGCATTTACCATACCTAGTATAAACAATGAG----- +---------- +>K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1 +ATAACCACAGAA-----------------AGCATAGTAATATGG---------------- +GGAAAGACTCCTAAATTTAAACTGCCCATACAAAA---------------GGAAACAT-- +----------