Mercurial > repos > dave > pipelign

annotate test-data/files/long.64.hmm @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
parents
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1 HMMER3/f [3.2.1 | June 2018]
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2 NAME long.64.aln
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3 LENG 80
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4 MAXL 174
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5 ALPH DNA
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6 RF no
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7 MM no
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8 CONS yes
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9 CS no
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10 MAP yes
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11 DATE Tue May 28 13:12:04 2019
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12 NSEQ 2
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13 EFFN 2.000000
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14 CKSUM 1595177567
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15 STATS LOCAL MSV -8.1741 0.72087
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16 STATS LOCAL VITERBI -9.7059 0.72087
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17 STATS LOCAL FORWARD -3.6637 0.72087
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18 HMM A C G T
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19 m->m m->i m->d i->m i->i d->m d->d
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20 COMPO 1.12278 1.57946 1.40266 1.50238
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22 0.33647 3.73767 1.33977 1.46634 0.26236 0.00000 *
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9a3a2e04f47a Uploaded
dave
parents:
diff changeset
158 46 2.38910 2.82844 0.25233 2.62837 46 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
159 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
160 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
161 47 2.31486 2.12647 2.41211 0.36768 47 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
162 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
163 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
164 48 2.31486 2.12647 2.41211 0.36768 48 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
165 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
166 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
167 49 2.38910 2.82844 0.25233 2.62837 49 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
168 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
169 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
170 50 2.38910 2.82844 0.25233 2.62837 50 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
171 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
172 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
173 51 2.31486 2.12647 2.41211 0.36768 51 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
174 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
175 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
176 52 2.46232 0.33808 2.58153 2.07174 52 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
177 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
178 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
179 53 2.46232 0.33808 2.58153 2.07174 53 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
180 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
181 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
182 54 0.28818 2.60848 2.42319 2.42940 54 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
183 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
184 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
185 55 0.28818 2.60848 2.42319 2.42940 55 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
186 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
187 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
188 56 0.28818 2.60848 2.42319 2.42940 56 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
189 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
190 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
191 57 0.28818 2.60848 2.42319 2.42940 57 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
192 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
193 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
194 58 2.31486 2.12647 2.41211 0.36768 58 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
195 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
196 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
197 59 2.38910 2.82844 0.25233 2.62837 59 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
198 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
199 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
200 60 2.46232 0.33808 2.58153 2.07174 60 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
201 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
202 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
203 61 2.38910 2.82844 0.25233 2.62837 61 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
204 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
205 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
206 62 0.28818 2.60848 2.42319 2.42940 62 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
207 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
208 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
209 63 0.28818 2.60848 2.42319 2.42940 63 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
210 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
211 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
212 64 2.46232 0.33808 2.58153 2.07174 64 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
213 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
214 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
215 65 2.46232 0.33808 2.58153 2.07174 65 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
216 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
217 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
218 66 2.46232 0.33808 2.58153 2.07174 66 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
219 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
220 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
221 67 0.28818 2.60848 2.42319 2.42940 67 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
222 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
223 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
224 68 2.38910 2.82844 0.25233 2.62837 68 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
225 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
226 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
227 69 0.28818 2.60848 2.42319 2.42940 69 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
228 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
229 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
230 70 2.31486 2.12647 2.41211 0.36768 70 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
231 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
232 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
233 71 1.91091 1.78233 1.95844 0.61114 71 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
234 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
235 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
236 72 1.97267 2.25870 0.46443 2.05625 72 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
237 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
238 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
239 73 1.91091 1.78233 1.95844 0.61114 73 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
240 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
241 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
242 74 0.56139 2.08489 1.86185 1.89791 74 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
243 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
244 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
245 75 0.56139 2.08489 1.86185 1.89791 75 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
246 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
247 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
248 76 1.97267 2.25870 0.46443 2.05625 76 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
249 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
250 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
251 77 0.56139 2.08489 1.86185 1.89791 77 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
252 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
253 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
254 78 1.98342 0.60779 2.04641 1.66785 78 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
255 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
256 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
257 79 1.91091 1.78233 1.95844 0.61114 79 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
258 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
259 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
260 80 0.56139 2.08489 1.86185 1.89791 80 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
261 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
262 0.03279 3.43399 * 1.46634 0.26236 0.00000 *
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
263 //