Mercurial > repos > dave > pipelign
diff test-data/files/long.64.hmm @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/files/long.64.hmm Mon Jun 10 16:04:10 2019 -0400 @@ -0,0 +1,263 @@ +HMMER3/f [3.2.1 | June 2018] +NAME long.64.aln +LENG 80 +MAXL 174 +ALPH DNA +RF no +MM no +CONS yes +CS no +MAP yes +DATE Tue May 28 13:12:04 2019 +NSEQ 2 +EFFN 2.000000 +CKSUM 1595177567 +STATS LOCAL MSV -8.1741 0.72087 +STATS LOCAL VITERBI -9.7059 0.72087 +STATS LOCAL FORWARD -3.6637 0.72087 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.12278 1.57946 1.40266 1.50238 + 1.38629 1.38629 1.38629 1.38629 + 0.33647 3.73767 1.33977 1.46634 0.26236 0.00000 * + 1 1.98342 0.60779 2.04641 1.66785 1 c - - - + 1.38629 1.38629 1.38629 1.38629 + 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 + 2 1.97267 2.25870 0.46443 2.05625 2 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 + 3 0.56139 2.08489 1.86185 1.89791 3 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 + 4 1.97267 2.25870 0.46443 2.05625 4 g - 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