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annotate test-data/files/NODE_4.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1
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2 -----------------------CGAGCAAGCTTCACAGGAGTTAAA-------------
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3 ----AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGAT----------
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4 ------------------------------------------------------------
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5 -----------------------------------
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6 >K03455|HIVHXB2CG_1717_2240_0_0_0_2_0_0_4b/1
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7 ---------------------------------TCACAGGAGGTAAA-------------
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8 ----AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTA
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9 ------------------------------------------------------------
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10 -----------------------------------
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11 >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1
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12 ------------------------------------------------------------
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13 ------------TGACAGAAACCTAGTTGGTCCAAAATGCGAACCCAGATTGTAAGACAA
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14 TTTTAAAAGCATTGGGACCAGC--------------------------------------
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15 -----------------------------------
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16 >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1
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17 ------------------------------------------------------------
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18 -----------------------------------------------------------A
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19 TTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAG
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20 -------------TAGGATGAC-------------
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21 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1
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22 ------------------------------------------------------------
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23 -----------------CTACCTCTTCTTCTGCTAGACTGCC------------------
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24 ATTTAACAGCAGTTGAGTTGATA-------------------------------------
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25 ---------CTACTGGCCTAATTCCATGT----GT
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26 >K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1
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27 ------------------------------------------------------------
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28 ---TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCA------------------
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29 GTCTAGCAGAAGAAGAGGTAGTA-------------------------------------
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30 ---------AT-------TAGATC-----------
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31 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1
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32 ---TAACG--------------------------------------------------CC
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33 ACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAAC---AA-----------G
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34 CCCCAGAAGACGAAGGG-------------------------------------------
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35 -----------------------------------
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36 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1
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37 GTGGAGA-----------------------------------------------------
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38 -----GAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCC---------------
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39 --TTGGCACTTATCTGGGA-----------------------------------------
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40 ------------------CGATCT-----------
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41 >K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1
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42 TCCGAAGA--------------------------------------------------TC
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43 GTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGGATCTGA-------------
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44 CTCTGTCTCT--------------------------------------------------
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45 ---------------------CTC-----------
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46 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1
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47 CCAAGTA-----------------------------------------------------
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48 --TCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAA-----------T
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49 CCTAGGAAAATGTCTA--------------------------------------------
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50 -----------------------------------
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51 >K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1
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52 -----TA-----------------------------------------------------
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53 --TCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGGAGCCAAA-----------T
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54 CCTAGGAAAATGTCTAAC------------------------------------------
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55 ---------------------AGC-----------
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56 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1
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57 ----TGC-----------------------------------------------------
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58 --TCTGAAGAAAATTCCCTG----GCCTTCCCTTGTAGTAAGGCCATA-----------T
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59 CTTCCCTAAAAAATTAGC------------------------------------------
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60 ---------------------CTGTCT--------
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61 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1
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62 AAGTGCAA----------------------------------------------------
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63 ----------------GCAATCTGATTCACCCGATTTCTTCC------------------
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64 AATTATGATGACAGGTGTAGGTC-------------------------------------
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65 ---------CTACTAATACAGT-------------
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66 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1
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67 GAT---------------------------------------------------------
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68 ----------------------------GGTTTTATAGACATCA----------------
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69 CTATGAAAGCCCTCATCCAAGAAA-----------------AAGTTCAGAAGTACACA--
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70 ----------------TCCCACTAGG---------
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71 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1
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72 AA----------------------------------------------------------
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73 -------------------------------TTTATCAAGAGCC----------------
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74 ATTTAAAAATCTGAAAACAGGAAA-----------------ATATGCAAGAATGAGGGG-
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75 -------------TGCCCACACTAAT---------
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76 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1
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77 AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC----
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78 -----AGGAAGCAACCACCACTCTATT---------------------------------
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79 ------TTGTGCATC---------------------------------------------
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80 -----------------------------------
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81 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1
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82 AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT----
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83 -----AGCCAGTAGATCCTAGACTAT----------------------------------
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84 -------AGCCCTGG---------------------------------------------
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85 -----------------------------------
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86 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1
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87 --------------------------------------GGAGCT----AGAACGAT----
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88 -----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCT----------------
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89 GTAGACAAATACTGGGA-------------------------------------------
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90 -----------------------------------
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91 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1
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92 ----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC
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93 TTGTGGGGCTGTTGGCTCTGGTCTGCT---------------------------------
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94 ------------------------------------------------------------
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95 -----------------------------------
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96 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1
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97 TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC
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98 TGGTGGGGCAGTTGGCTCTGGTC-------------------------------------
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99 ------------------------------------------------------------
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100 -----------------------------------
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101 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1
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102 A-------------------------------------GGGATTATGGAAAACAGA----
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103 -----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGG----------------
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104 ATTAGAACATGG------------------------------------------------
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105 -----------------------------------
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106 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
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107 ------------CGGGCACAC----------------------------ACT--------
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108 ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGG----------------
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109 GTTCCCTAG--TTAGC--------------------------------------------
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110 -----------------------------------
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111 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
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112 ------------------------------------------------------------
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113 -CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGG----------------
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114 GTTCCCTAG--TTAGCCAGA----------------------------------------
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115 -----------------GAGCTCCCA---------
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116 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
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117 ---------------------------------------------------------TGC
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118 TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCC----------------
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119 ATCCAATCACACTACATATT----------------------------------------
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120 --------------------GACCAC---------
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121 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
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122 ------------GCTGCTCCC----------------------------ACCCTATCTTG
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123 TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCC----------------
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124 ATCCAATCA---------------------------------------------------
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125 -----------------------------------
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126 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
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127 ------------------------------------------------------------
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128 TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCA----------------
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129 ATTCTGAAA--CTGGATAAA----------------------------------------
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130 ---------------CAGCAGTTGTT---------
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131 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
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132 ------------------------------------------------------------
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133 --------------------------------TGCCAAGGATCC----------------
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134 GTTCACTAA--TCGAATGGA--------------------------TCTGTCTCTGTCTC
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135 TCTCTCCACCTTCTTCTTCTATTCCT---------
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136 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
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137 ------------------------------------------------------------
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138 TTCTGGGAAGTTCAAT----------------TAGGAATACCAC----------------
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139 ATCCCGCAGGGTTAAAAAAG--------------------------AAAAAATCAGT---
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140 ---------------AACAGTACTGG---------
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141 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
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142 ------------------------------------------------------------
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143 CTATG------TTTAC----------------TTCTAATCCCGA----------------
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144 ATCCTGCAAAGCTAGATAAAT---------------------TGCTTGTAACTCAGTC--
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145 ---------------TTCTGATTTGT---------
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146 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
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147 ------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
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148 TCCCAAAGAAGACAAG----ATATCCTTGATC----------------------------
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149 ------------------------------------------------------------
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150 -----------------------------------
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151 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
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152 ------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
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153 TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA----------------------
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154 ------------------------------------------------------------
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155 -----------------------------------
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156 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
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157 -------------------------------------------------GGCTAATTCAC
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158 TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACC----------------
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159 ACCCACAAG---------------------------------------------------
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160 ----------------GCTACTTCCC---------
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161 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
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162 ---------------------------------ACAACGGAATTGG---AGGAAATGAAC
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163 CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACT----------------
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164 ATTTTT------------------------------------------------------
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165 -----------------------------------
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166 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
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167 -----------------------------------AATAGTACTTT---CCTGATTCCAG
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168 CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCC----------------
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169 TTTGTGTG----------------------------------------------------
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170 -----------------------------------
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171 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
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172 -----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT
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173 CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATC----------------
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174 AG----------------------------------------------------------
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175 -----------------------------------
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176 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
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177 --------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT
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178 CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA-----------------------
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179 ------------------------------------------------------------
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180 -----------------------------------
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181 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
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182 -----------------------------------------ACAGC---GACGAAGAGCT
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183 CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGC----------------
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184 AGTAAGTA----------------------------------------------------
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185 -----------------TTACAT------------
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186 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1
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187 ------------------------------------------------------------
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188 -------------------------------------AGCCATT----------------
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189 GCTCTCCAA--TTACTGTGA--------------------------TATTTCTCATGTTC
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190 ATCTTGGGCCTT----AACTATTCCATCTAAAAAT