annotate test-data/files/long.fas @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1
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2 CAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACA
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3 CCATGCTAAA
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4 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
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5 GAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCA
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6 ATCAAATCAG
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7 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1
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8 ATCCTCATGCATCTGTTCTACCATGTCATTTTTCCACATGTTAAAATTTTCTGTCACATT
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9 TACCAATACT
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10 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
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11 CTATGTTTACTTCTAATCCCGAATCCTGCAAAGCTAGATAAATTGCTTGTAACTCAGTCT
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12 TCTGATTTGT
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13 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1
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14 CCAAGTATCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAATCCTAGG
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15 AAAATGTCTA
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16 >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1
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17 CTACTATTGCTACTAATGGTATAGGTTGCGTTACATGTACTACTTACTGCTTTGATAGAG
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18 AAGCTTGATG
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19 >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1
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20 TCTTTGCCTTGGTTGGAGCAACTCCTAATGGTTGAATTTTTACTACTTTATATTTATATA
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21 ATTCCCTTCT
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22 >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1
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23 AATAGCAATTTGTACAAGCAGTTTTAGGCTGACTTCGTGGATGCTTCCAGGGCTCTCGTC
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24 TAGGATCAAC
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25 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
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26 ACAACGGAATTGGAGGAAATGAACCAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAG
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27 TACTATTTTT
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28 >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1
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29 AGGATTTTACATAATTGCCTTACTTAAATCCCTGGGTAAATCTGACTTGCCCAATTCAAT
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30 TTCCCCACTA
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31 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1
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32 TTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTACACCCAGTGGGGGGACAT
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33 CAAGCAGCCA
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34 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1
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35 CTACCTCTTCTTCTGCTAGACTGCCATTTAACAGCAGTTGAGTTGATACTACTGGCCTAA
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36 TTCCATGTGT
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37 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1
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38 TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCTTTTTTCTTTATGGCAAATAC
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39 TGGAGTATTG
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40 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
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41 CTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCA
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42 AGCTTCTGTA
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43 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
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44 TGCCAAGGATCCGTTCACTAATCGAATGGATCTGTCTCTGTCTCTCTCTCCACCTTCTTC
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45 TTCTATTCCT
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46 >K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1
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47 CAGGATTAACTGCGAATCTTTCTAGCTCCCTTGTTGCCCATACTATATGTTTTAATTTAT
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48 ATTTTTTCTT
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49 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
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50 GCTGCTCCCACCCTATCTTGTGCTGGCTCAGCTCGTCTCATTGTTTCCCTTACAGTAGGC
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51 CATCCAATCA
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52 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1
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53 ACAGTAGAAAAATTCCCCTCCACCATTAAAACTGTGGTTACAATATCTGGGTCCCCTCCT
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54 GAGGATTGGT
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55 >K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1
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56 TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAG
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57 TAATTAGATC
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58 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1
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59 AGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGAT
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60 TAGAACATGG
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61 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1
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62 GATCCTGCATATAAGCAGCAGCTTTTTGCCTTTACTGGTTCTCTCTGGTTAGACCAGATC
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63 TGAGCCTGGG
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64 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1
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65 GTACTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCACCATTATCGTTTGAGACCCAC
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66 CTCCCAACCC
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67 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1
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68 CAGAGGAGGTCTCTCGACGCAGGACTCGGCTTGCTGAAGGGCGCACGGCAAGAGGCGAGG
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69 GGCGGCGACT
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70 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1
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71 GTCTGGGGCATCAAGCAGCTCCAGGCAAGAATGCTGGCTGTGGAAAGATACCTAAAGGAT
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72 CAACAGCTCC
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73 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1
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74 TTTTTCAGTTCGCTTAGATGAAGACTTCAGGCAGTATACTGCATTTACCATACCTAGTAT
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75 AAACAATGAG
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76 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
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77 ACAGCGACGAAGAGCTCATCAGAACAGACAGACTCATCAAGCTTCTCTATCAAAGCAGTA
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78 AGTATTACAT
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79 >K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1
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80 TATCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGGAGCCAAATCCTAGGAAAAT
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81 GTCTAACAGC
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82 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1
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83 GGGGGGAACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAA
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84 GAATTACAAA
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85 >K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1
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86 GTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGT
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87 GGGGGGACAT
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88 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1
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89 TGCTCTGAAGAAAATTCCCTGGCCTTCCCTTGTAGTAAGGCCATATCTTCCCTAAAAAAT
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90 TAGCCTGTCT
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91 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
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92 GGCTAATTCACTCCCAACGAAGACAAGATATCCTTGATCTGTGGATGTACCACCCACAAG
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93 GCTACTTCCC
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94 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1
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95 TGATTTGTTGTGTCAGTTAGGGTGACAACTTTTTGTGTTCCTCTATTAGTAACATATCCT
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96 GCTTTTCCTA
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97 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1
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98 TAACGCCACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAACAAGCCCCAGA
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99 AGACGAAGGG
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100 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1
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101 GTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCT
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102 GGGACGATCT
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103 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
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104 TTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTA
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105 ACAGTACTGG
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106 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1
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107 CTCTAGTGTCCATTCATTGTGTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTC
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108 CATCTCTCCT
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109 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1
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110 AGCCATTGCTCTCCAATTACTGTGATATTTCTCATGTTCATCTTGGGCCTTAACTATTCC
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111 ATCTAAAAAT
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112 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
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113 TGCTGCTGGCTCAGCTCGTCTCATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA
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114 TATTGACCAC
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115 >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1
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116 TCGGAGTCATTGTTGCTATTACCACCATCTTTTGTTCATAGCAGCCCTGTAATATTTGAT
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117 TAACATCTAA
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118 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1
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119 ATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAA
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120 AAGGAAACAT
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121 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1
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122 TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCTCATCCTGTCTCCTTGCCACACAA
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123 TCATCACCTG
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124 >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1
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125 ACCCATCTTATAGCAAAATCCTTTCCAAGCCCTGTCTTATTCTTCTAGGTATGTGGCGAA
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126 TAGCTCTACA
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127 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1
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128 GAGGGGGAGTTGTTGTCTGTACCCCAGACCTGAAGCTCTCTTCTTGTGGGGCTGTTGGCT
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129 CTGGTCTGCT
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130 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1
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131 TATAAAGACGCAGAAGTTATTCCAGCATACACAGGGCAGGAAACAGCATATTTTCTTTTC
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132 AAATTAGCAG
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133 >K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1
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134 TCCGAAGATCGTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGGATCTGACTC
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135 TGTCTCTCTC
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136 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1
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137 TGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATA
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138 CATTATTGTG
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139 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1
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140 GGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAACAGTAGTGCGAAGAA
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141 GAAAAGCAAA
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142 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1
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143 AAGTGCAAGCAATCTGATTCACCCGATTTCTTCCAATTATGATGACAGGTGTAGGTCCTA
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144 CTAATACAGT
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145 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1
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146 TATGGTACCAGTTAGAGAAAGAACCCCTAGTAGGAGCAGAAACCTTCTATGTAGATGGGG
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147 CAGCTAACAG
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148 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1
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149 ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATA
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150 TAGAAGCAGA
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151 >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1
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152 TTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCAT
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153 GAGGATATAA
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154 >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
155 TGACAGAAACCTAGTTGGTCCAAAATGCGAACCCAGATTGTAAGACAATTTTAAAAGCAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
156 TGGGACCAGC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
157 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
158 GGTGATATGGGCTGATGTACCATTTGCCCCTGGATGTTCTGCACTATAGGGTAATTTTGG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
159 CTGACCTGAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
160 >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
161 GGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
162 GGATATAATC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
163 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
164 GCCTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGAGAGCCACC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
165 TAGCAATTCA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
166 >K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
167 GGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
168 GCGAGGGGCG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
169 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
170 TCCTGACTCCAATACTGTAGGAGATTCCACCAATATTTGAGGGCTTCCCACCCCCTGCGT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
171 CCCAGAAGTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
172 >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
173 ATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
174 GTAGGATGAC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
175 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
176 CAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
177 GAGTGGTCCA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
178 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
179 CACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
180 ATCCTTGATC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
181 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
182 CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAGTTAGCCAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
183 AGAGCTCCCA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
184 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
185 ACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
186 TAGTAGCCCG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
187 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
188 AATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
189 CCACACTAAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
190 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
191 TTAAAATTTTCTGTCACATTTACCAATACTACTTCTTGTGGGTTGGGGTCTGTGGGTACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
192 CAGGCATGTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
193 >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
194 TCCAAGCCCTGTCTTATTCTTCTAGGTATGTGGCGCATAGCTCTACAAGCTCCTTGTACT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
195 ACTTCAATAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
196 >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
197 TGTGTTCAGCTGTACTATTATGGTTATAGCATTTTCCGTGAAATTGACAGATCTAATTAC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
198 TACCTCTTCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
199 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
200 GATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAAAAAGTTCAGAAGTACACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
201 TCCCACTAGG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
202 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
203 TCCTCTGTCGAGTAACGCCTATTCTGCTATGACGACACCCAATTCTGAAACTGGATAAAC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
204 AGCAGTTGTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
205 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
206 AGTTCATGTATCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGGCTGA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
207 AACAGCATAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
208 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
209 GGAGCTAGAACGATTCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
210 AATACTGGGA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
211 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
212 AAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
213 AAAGACAGTA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
214 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
215 AGTAAGTAGTACCTGTAACGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
216 CACTAATAAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
217 >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
218 CGAGCAAGCTTCACAGGAGTTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
219 GAACCCAGAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
220 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
221 GACCAGCAAAGCACCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
222 TAAAAGTAGT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
223 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
224 CCCCATATTACTATGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
225 TCATTAGTGT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
226 >K03455|HIVHXB2CG_1717_2240_0_0_0_2_0_0_4b/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
227 TCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
228 TGTAAGACTA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
229 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
230 TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTGCCAAAGAAGACAAGATATCCTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
231 GATCTGAGGA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
232 >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
233 ACAGTAGAAAAATTCCCCTCCACAATTAAAACTGTGGTTACAATTTCTGGGTCCCCTCCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
234 GAGGATTGCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
235 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
236 CGGGCACACACTACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
237 CCTAGTTAGC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
238 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
239 TTCTGAGGGGGAGATGTTGTCTCTAGCCCAGACCTGAAGCTCTCTTCTGGTGGGGCAGTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
240 GGCTCTGGTC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
241 >K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
242 ATGTATGGGAATTGGCTGAAAGGATACCTTTGGACAGGCCTGAGTAATGACTGAGGTGTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
243 ACAACTTGTC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
244 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
245 CACCCATCCAAAGGAATTGAGGTTCTTTCTGATGTTTTTTGTCTGGTGTGGTAAGTCCCC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
246 ACCTCGACAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
247 >K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
248 TGCTAATTTTAAAAGACAATATTCTGTTTCCTGCCCTGTTTCTGCTGGAATAACTTCTGC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
249 TTCTATATAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
250 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
251 TTTTATGGTTCATAATCCACTCCATGTACTGGTTCTTTTAGAATCTCTCATTTTTCTGCC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
252 CGTTCTAGCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
253 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
254 CTTTATATTTTTTCTTACCCCCTGGCCTTAACCGAATTTTTTCCCATCGATCTAATTCTC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
255 CCCCGCTTAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
256 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
257 TAGGAACCAAAGAAAGATAGTTAAGTGTTTCAATTGTGGCACAGAAGGGCACACAGCCAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
258 AAATTGCAGG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
259 >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
260 TCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTCTTATGTCCAGAATGCTGGTAGGG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
261 CTATACATTC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
262 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
263 ATAGAGCTTCCTTTAGTTGCCCCCCTATCTTTATTGTGACGAGGGGACGTTGCCAAAGAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
264 TGACCTGAGG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
265 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
266 GAAGTCTTGAGTTCTCTTATTAAGTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
267 GTCTTTTTTC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
268 >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
269 TTTGATTGACTAACTCTGATTCACTTTGATCTTGTAGTGCTTGAATGATTCCTAATGCAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
270 ATTGTGAGTC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
271 >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
272 ACTTTATATTTATATAATTCACTTCTCCAATTGTCCCTCATCTCTCCTCCTCCAGGTCTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
273 AAGATCTCGG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
274 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
275 AGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGTAGCCAGTAGATCCTAGACT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
276 ATAGCCCTGG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
277 >K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
278 GAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAATAACCAGTACATGGAGTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
279 TATTATGACC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
280 >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
281 CTTCTTCTGTTAGTGGTATTACTTCTGTTAGTGCTTTGGTACCTCTAAGGAGTTTACATA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
282 ATTGCCTTAC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
283 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
284 AAGCTTGTGTAATTGTTAATTTCTCTGTCCCACTCCATCCAGGTCGTGTGATTCCAACTC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
285 TGTTCCAGAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
286 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
287 TCCCTGTTCGGGCGCCACTGCTAGAGATTTTCCACACTGACTAAAAGGGTCTGAGGGATC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
288 TCTAGTTACC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
289 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
290 GCCACAGAGGGAGCCACACAATGAATGGACACTATAGCTTTTAGAGGAGCTTAAGAATGA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
291 AGCTGTTAGA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
292 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
293 CAGATACCTAAATGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
294 CACCCCTGCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
295 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
296 AATAGTACTTTCCTGATTCCAGCACTGACTAAATTATCTACTTGTTCATTTCCTCCAATT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
297 CCTTTGTGTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
298 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
299 AATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGCAGGAAGCAACCACCACTCTAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
300 TTTGTGCATC