Mercurial > repos > dave > pipelign

annotate test-data/files/long.69.hmm @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
parents
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1 HMMER3/f [3.2.1 | June 2018]
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2 NAME long.69.aln
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3 LENG 95
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4 MAXL 195
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5 ALPH DNA
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6 RF no
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7 MM no
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8 CONS yes
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9 CS no
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10 MAP yes
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11 DATE Tue May 28 13:12:02 2019
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12 NSEQ 2
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13 EFFN 2.000000
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14 CKSUM 3693886677
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15 STATS LOCAL MSV -9.3349 0.73564
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16 STATS LOCAL VITERBI -11.4690 0.73564
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17 STATS LOCAL FORWARD -2.9050 0.73564
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18 HMM A C G T
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19 m->m m->i m->d i->m i->i d->m d->d
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20 COMPO 1.31992 1.50669 1.46715 1.27076
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22 0.33647 3.73767 1.33977 1.46634 0.26236 0.00000 *
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9a3a2e04f47a Uploaded
dave
parents:
diff changeset
158 46 2.01896 1.01168 2.12953 0.95527 46 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
159 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
160 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
161 47 2.46232 0.33808 2.58153 2.07174 47 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
162 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
163 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
164 48 1.08498 1.08670 1.94700 1.70340 48 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
165 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
166 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
167 49 1.12273 2.17004 0.88086 1.92408 49 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
168 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
169 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
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9a3a2e04f47a Uploaded
dave
parents:
diff changeset
171 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
172 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
173 51 1.12273 2.17004 0.88086 1.92408 51 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
174 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
175 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
176 52 2.01896 1.01168 2.12953 0.95527 52 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
177 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
178 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
179 53 0.28818 2.60848 2.42319 2.42940 53 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
180 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
181 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
182 54 2.01896 1.01168 2.12953 0.95527 54 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
183 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
184 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
185 55 1.84050 1.95342 1.03654 1.06480 55 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
186 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
187 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
188 56 2.38910 2.82844 0.25233 2.62837 56 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
189 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
190 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
191 57 1.12273 2.17004 0.88086 1.92408 57 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
192 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
193 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
194 58 1.84050 1.95342 1.03654 1.06480 58 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
195 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
196 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
197 59 2.31486 2.12647 2.41211 0.36768 59 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
198 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
199 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
200 60 1.88401 1.14290 1.03416 1.75097 60 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
201 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
202 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
203 61 2.31486 2.12647 2.41211 0.36768 61 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
204 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
205 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
206 62 1.09289 1.89038 1.88803 1.01509 62 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
207 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
208 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
209 63 2.31486 2.12647 2.41211 0.36768 63 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
210 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
211 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
212 64 2.31486 2.12647 2.41211 0.36768 64 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
213 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
214 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
215 65 0.28818 2.60848 2.42319 2.42940 65 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
216 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
217 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
218 66 1.84050 1.95342 1.03654 1.06480 66 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
219 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
220 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
221 67 1.12273 2.17004 0.88086 1.92408 67 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
222 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
223 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
224 68 0.28818 2.60848 2.42319 2.42940 68 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
225 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
226 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
227 69 2.01896 1.01168 2.12953 0.95527 69 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
228 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
229 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
230 70 2.46232 0.33808 2.58153 2.07174 70 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
231 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
232 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
233 71 1.91091 1.78233 1.95844 0.61114 71 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
234 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
235 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
236 72 1.98342 0.60779 2.04641 1.66785 72 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
237 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
238 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
239 73 1.91091 1.78233 1.95844 0.61114 73 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
240 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
241 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
242 74 1.98342 0.60779 2.04641 1.66785 74 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
243 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
244 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
245 75 0.56139 2.08489 1.86185 1.89791 75 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
246 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
247 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
248 76 1.91091 1.78233 1.95844 0.61114 76 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
249 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
250 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
251 77 1.91091 1.78233 1.95844 0.61114 77 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
252 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
253 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
254 78 1.91091 1.78233 1.95844 0.61114 78 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
255 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
256 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
257 79 1.91091 1.78233 1.95844 0.61114 79 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
258 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
259 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
260 80 1.91091 1.78233 1.95844 0.61114 80 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
261 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
262 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
263 81 1.98342 0.60779 2.04641 1.66785 81 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
264 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
265 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
266 82 1.91091 1.78233 1.95844 0.61114 82 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
267 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
268 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
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9a3a2e04f47a Uploaded
dave
parents:
diff changeset
270 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
271 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
272 84 1.98342 0.60779 2.04641 1.66785 84 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
273 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
274 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
275 85 1.98342 0.60779 2.04641 1.66785 85 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
276 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
277 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
278 86 1.98342 0.60779 2.04641 1.66785 86 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
279 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
280 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
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9a3a2e04f47a Uploaded
dave
parents:
diff changeset
282 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
283 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
284 88 1.91091 1.78233 1.95844 0.61114 88 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
285 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
286 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
287 89 1.91091 1.78233 1.95844 0.61114 89 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
288 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
289 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
290 90 1.98342 0.60779 2.04641 1.66785 90 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
291 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
292 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
293 91 1.91091 1.78233 1.95844 0.61114 91 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
294 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
295 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
296 92 0.56139 2.08489 1.86185 1.89791 92 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
297 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
298 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
299 93 1.97267 2.25870 0.46443 2.05625 93 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
300 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
301 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
302 94 1.98342 0.60779 2.04641 1.66785 94 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
303 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
304 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
305 95 1.91091 1.78233 1.95844 0.61114 95 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
306 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
307 0.03279 3.43399 * 1.46634 0.26236 0.00000 *
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
308 //