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annotate test-data/files/NODE_31.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1
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2 ---------------------------------------------GATCCTGC-------
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3 ------ATATAAGCAGCAGCTTTTTGCCTTTACTGGTTCTCTCTGGTTAGACCAGATCTG
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4 AGCCTGGG-----------------------
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5 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1
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6 --------------------------------------------CAGATACCT-------
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7 ------AAATGATCAACAGCTCCTGGGGATT-TGGGGTTGCTCTGGAAAACTCATTTGCA
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8 CCCCTGCT-----------------------
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9 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1
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10 GTCTGGGGCATCAAGCAGCTCCAGGCAAGAATGCTGGCTGTGGAAAGATACCT-------
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11 ------AAAGGATCAACAGCTCC-------------------------------------
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12 -------------------------------
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13 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1
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14 ------------------------------------ACAGTAGAAAAATTCCCCTCCACC
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15 ATTAAAACTGTGGTTACAATATC---------TGGGTCCCCTCC-------------TGA
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16 GGATTGGT-----------------------
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17 >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1
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18 ------------------------------------ACAGTAGAAAAATTCCCCTCCACA
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19 ATTAAAACTGTGGTTACAATTTC---------TGGGTCCCCTCC-------------TGA
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20 GGATTGCT-----------------------
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21 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1
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22 TCCTG------------ACTCCAA-----------TACTGTAGGAGATTCCAC-------
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23 ----------------CAATATT---------TGAGGGCTTCCCACCCCCTGCGTCCCAG
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24 AAGTT--------------------------
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25 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1
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26 ----------------ATCCTCAT------GCATCTGTTCTACCATGTCATTTTT-----
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27 ------CCACATGTTAAAATTTTCTGT-----CACATTTAC---CAATACT---------
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28 -------------------------------
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29 >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1
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30 ----------------TT--------------GGTAAATGTGACAGAAAATTTTA-----
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31 ------ACATGTGGAAAAATGACATGG-----TAGA---AC---AGATGCA---------
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32 -------------TGAGGATATAA-------
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33 >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1
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34 --------------------------------GGTAAATGTGACAGAAAATTTTA-----
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35 ------ACATGTGGAAAAATGACATGG-----TAGA---AC---AGATGCA---------
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36 -------------TGAGGATATAAT-----C
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37 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1
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38 ------------------------------------------------------------
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39 -------------TTAAAATTTTCTGT-----CACATTTAC---CAATACTACTTCTTGT
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40 GGGTTGGGGTCTGTGGGTACACAGGCATGTG
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41 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1
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42 -------------------------------CACCCATCCAAAGGAATTGAGGTT-----
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43 ------CTTT---CTGATGTTTTTTGT-----CTGGTGTGG---TAAGTCCCCACCTCGA
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44 CAG----------------------------
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45 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1
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46 CTTTA------TATTTTTTCTTAC------CCCCTGGCCTTAACCGAATTTTTTC-----
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47 ------CCATCGATCTAATTCTCC--------CCCGCTTAA-------------------
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48 -------------------------------
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49 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1
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50 TCC--------CTGTTCG--------------GGCGCCACTGCTAGAGATTTTCC-----
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51 ------ACACTGACTAAAAGGGTCTGA-----GGGA---TCTCTAGTTACC---------
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52 -------------------------------