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annotate test-data/files/NODE_1.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1
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2 ------------------------------------------------------------
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3 ----------------------------GA------TCCTGC-------------ATATA
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4 AGCAGCAGCTTTTTGCCTTT------------ACTGGTTCTCTCTGGTTAGAC-------
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5 ------------------------------------------------------CAGATC
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6 TGAGCCTGGG-----------------------
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7 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1
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8 ------------------------------------------------------------
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9 ---------------------------CAG------ATACCT-------------AAATG
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10 ATCAACAGCTCCTGGGGATT-------------TGGGGTTGCTCTGGAAAACT-------
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11 ------------------------------------------------------CATTTG
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12 CACCCCTGCT-----------------------
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13 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1
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14 GTCTGG------------------------------------GGCATCAAGCAGCTCCAG
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15 G-------CAAGAATGCTGGCTGTGGAAAG------ATACCT-------------AAAGG
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16 ATCAACAGCTCC------------------------------------------------
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17 ------------------------------------------------------------
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18 ---------------------------------
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19 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1
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20 ------------------------------------------------------------
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21 -------------------ACAGTAGAAAA------ATTCCCCTCCACCATTAAAACTGT
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22 GGTTACAATATC---------------------TGGGTCCCCTCC---------------
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23 -----------------------------------------------------------T
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24 GAGGATTGGT-----------------------
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25 >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1
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26 ------------------------------------------------------------
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27 -------------------ACAGTAGAAAA------ATTCCCCTCCACAATTAAAACTGT
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28 GGTTACAATTTC---------------------TGGGTCCCCTCC---------------
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29 -----------------------------------------------------------T
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30 GAGGATTGCT-----------------------
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31 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1
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32 TCCTG------------------------------------------------ACTCCAA
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33 ------------------TACTGTAGGAGA------TTCCAC------------------
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34 -----CAATATT---------------------TGAGGGCTTCCCACCCCCTG-------
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35 ------------------------------------------------------CGTCCC
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36 AGAAGTT--------------------------
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37 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1
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38 ----------------------------------------------------ATCCTCAT
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39 -------------GCATCTGTTCTACCATG------TCATTTTT-----------CCACA
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40 TGTTAAAATTTTCTGT-----------------CACATTTAC---CAATACT--------
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41 ------------------------------------------------------------
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42 ---------------------------------
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43 >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1
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44 ----------------------------------------------------TT------
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45 ---------------GGTAAATGTGACAGA------AAATTTTA-----------ACATG
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46 TGGAAAAATGACATGG-----------------TAGA---AC---AGATGCA--------
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47 ------------------------------------------------------------
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48 ---------------TGAGGATATAA-------
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49 >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1
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50 ------------------------------------------------------------
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51 ---------------GGTAAATGTGACAGA------AAATTTTA-----------ACATG
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52 TGGAAAAATGACATGG-----------------TAGA---AC---AGATGCA--------
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53 ------------------------------------------------------------
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54 ---------------TGAGGATATAAT-----C
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55 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1
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56 ------------------------------------------------------------
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57 ------------------------------------------------------------
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58 --TTAAAATTTTCTGT-----------------CACATTTAC---CAATACTA-------
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59 ------------------------------------------------------CTTCTT
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60 GTGGGTTGGGGTCTGTGGGTACACAGGCATGTG
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61 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1
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62 ------------------------------------------------------------
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63 --------------CACCCATCCAAAGGAA------TTGAGGTT-----------CTTT-
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64 --CTGATGTTTTTTGT-----------------CTGGTGTGG---TAAGTCCC-------
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65 ------------------------------------------------------CACCTC
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66 GACAG----------------------------
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67 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1
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68 CTTTA------------------------------------------TATTTTTTCTTAC
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69 -------------CCCCTGGCCTTAACCGA------ATTTTTTC-----------CCATC
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70 GATCTAATTCTCC--------------------CCCGCTTAA------------------
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71 ------------------------------------------------------------
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72 ---------------------------------
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73 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1
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74 TCC--------------------------------------------CTGTTCG------
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75 ---------------GGCGCCACTGCTAGA------GATTTTCC-----------ACACT
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76 GACTAAAAGGGTCTGA-----------------GGGA---TCTCTAGTTACC--------
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77 ------------------------------------------------------------
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78 ---------------------------------
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79 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1
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80 ------------------------------------------AGTAAGTAGTACCTGTAA
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81 C--GCAACCTATACCAATAG-TAGCAATAG------TAGCATTA-----------GTAGT
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82 AGCACTAATAAT------------------------------------------------
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83 ------------------------------------------------------------
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84 ---------------------------------
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85 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1
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86 ------------------------------------------------------------
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87 ----CAACCTATACCAATAG-TAGCAATAG------TAGCATTA-----------GTAGT
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88 AGCAATAATAATAGCAATAG------------TTGAGTGGTC------------------
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89 ------------------------------------------------------------
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90 ---------------------------CA----
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91 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1
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92 ACAGTAA------------TTGGAG--------------AGCAATGGCTAGTGATTTTAA
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93 CCTGCCACCTGTAGTAGCAA-AAGAAATAG------TAGCCCG-----------------
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94 ------------------------------------------------------------
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95 ------------------------------------------------------------
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96 ---------------------------------
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97 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1
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98 ------------------------------------------------------------
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99 ---------TATGGTACCAGTTAGAGAAAG------AACCCCTA-----------GTAGG
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100 AGCAGAAACCTTCTATGTAG------------ATGGGGCAGC------------------
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101 ------------------------------------------------------------
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102 ---------------------------TAACAG
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103 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1
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104 ---------------------------------------------AGTTCATGTATCCAG
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105 T----------GGATATATAGAAGCAGAAG------TTATTCCAGCAGAAACAGGGGCTG
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106 AAACAGCATAT-------------------------------------------------
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107 ------------------------------------------------------------
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108 ---------------------------------
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109 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1
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110 ATTGTACA--------CATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAG
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111 T----------GGATATATAGAAGCAGA--------------------------------
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112 ------------------------------------------------------------
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113 ------------------------------------------------------------
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114 ---------------------------------
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115 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1
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116 ------------------------------------------------------------
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117 --------------TATAAAGACGCAGAAG------TTATTCCAGCATACACAGGGCAGG
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118 AAACAGCATATTTTCTTTT--------------CAAATTAG-------------------
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119 ------------------------------------------------------------
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120 -----------CAG-------------------
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121 >K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1
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122 ------------------------------------------------------------
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123 --------------TGCTAA-----------------------------------TTTTA
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124 AAAGACAATATTCTGTTTC--------------CTGCCCTGTTTCTGCTGGAA-------
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125 ------------------------------------------------------TAACTT
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126 CTGCTTCTATATAT-------------------
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127 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1
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128 ------------------------------------------------------------
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129 --------------GCCA---CAGAGGGAG------CCACACAA-----------TGAAT
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130 GGACACTATAGCTTTTAGAG--GAGCTTAAGAATGAAGCTGTTA----------------
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131 ------------------------------------------------------------
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132 ------------------GA-------------
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133 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1
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134 ------------------------------------------------------------
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135 --------------CC--------------------CCATAT------------------
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136 ---TACTATGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTA-------
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137 ------------------------------------------------------CATCAT
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138 TAG--------------TGT-------------
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139 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1
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140 ------------------------------------------------------------
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141 ----------------------CAGAGGAG------GTCTCT------------------
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142 ----------------------CGACGCAGGACTCGGCTTGCTGAAGGGCGCA-------
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143 ------------------------------------------------------CGGCAA
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144 GAGGCGAGGGGCGG-CGACT-------------
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145 >K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1
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146 ------------------------------------------------------------
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147 ----------------GGAAACCAGAGGAG------CTCTCT------------------
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148 ----------------------CGACGCAGGACTCGGCTTGCTGAAGCGCGCA-------
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149 ------------------------------------------------------CGGCAA
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150 GAGGCGAGGGGCG--------------------
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151 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1
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152 ------------------------------------------------------------
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153 --------------TAGGAACCAAAGAAAG------ATAGTT------------------
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154 ----------------------AAGTGTTTCAATTGTGGCACAGAAGGGCACA-------
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155 ------------------------------------------------------CAGCCA
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156 GAAATTGCAGG----------------------
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157 >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1
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158 CTTCTTC-----------------------------TGTTAGTGGTATTACTTCTGTTAG
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159 TGCTTTGGTACCTCTAAGGAGTTTACATAA------TTGCCTTAC---------------
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160 ------------------------------------------------------------
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161 ------------------------------------------------------------
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162 ---------------------------------
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163 >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1
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164 ------------------------------------------------------------
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165 ----------------AGGATTTTACATAA------TTGCCTTACTTAAATCCCTGGGTA
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166 AATCTGACTTGCCCAATT---------------CAATTTCCCCA----------------
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167 -----------------------------------------------------------C
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168 TA-------------------------------
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169 >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1
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170 ------------------------------------------------------------
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171 -------------ACTTTATATTTATATAA------TTCACTTCTCCAATTGTCC-----
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172 -----------CTCATCT---------------CTCCTCCTCCAGGTCTGAAG-------
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173 -------------------------------------------------------ATCTC
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174 GG-------------------------------
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175 >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1
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176 TCTTTGC-----------------------------CTTGGTTGGAGCAACTCCTAATGG
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177 TTGAATTTTTACTACTTTATATTTATATAA------TTCCCTTCT---------------
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178 ------------------------------------------------------------
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179 ------------------------------------------------------------
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180 ---------------------------------
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181 >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1
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182 ------------------------------------------------------------
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183 -----------------------TCCAAG-----CCCTGTCTTATTCTTCTAGGTATGTG
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184 GCGCATAGCTCTACAAGC---------------TCCTTGTACTACTTCAATAA-------
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dave
parents:
diff changeset
185 ------------------------------------------------------------
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dave
parents:
diff changeset
186 ---------------------------------
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dave
parents:
diff changeset
187 >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1
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dave
parents:
diff changeset
188 -----------------------------------------------------------A
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
189 CCCATCTTATAGCA-AAATCCTTTCCAAG-----CCCTGTCTTATTCTTCTAGGTATGTG
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dave
parents:
diff changeset
190 GCGAATAGCTCTACA---------------------------------------------
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dave
parents:
diff changeset
191 ------------------------------------------------------------
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dave
parents:
diff changeset
192 ---------------------------------
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dave
parents:
diff changeset
193 >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1
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dave
parents:
diff changeset
194 ------------------------------------------------------------
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dave
parents:
diff changeset
195 ----------TCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTCTTATGTCCAGAAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
196 GCTGGTAGGGCT------------------------AT---------ACATTC-------
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dave
parents:
diff changeset
197 ------------------------------------------------------------
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dave
parents:
diff changeset
198 ---------------------------------
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dave
parents:
diff changeset
199 >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1
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dave
parents:
diff changeset
200 ------------------------------------------------------------
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dave
parents:
diff changeset
201 ----------AATA-GCAATTTGTACAAG-------CAGTTTTAGGCTGACTTCGTGGAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
202 GCTTCCAGGGCT------------------------CTCGTCTA-GGATCAAC-------
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dave
parents:
diff changeset
203 ------------------------------------------------------------
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dave
parents:
diff changeset
204 ---------------------------------
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dave
parents:
diff changeset
205 >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1
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dave
parents:
diff changeset
206 ------------------------------------------------------------
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dave
parents:
diff changeset
207 ----------TGTG-TTCAGCTGTACTAT-------TATGGTTATAGCATTTTCCGTGAA
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dave
parents:
diff changeset
208 ATTGACAGATCTAATTAC---------------TACCTCTTCT-----------------
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dave
parents:
diff changeset
209 ------------------------------------------------------------
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dave
parents:
diff changeset
210 ---------------------------------
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dave
parents:
diff changeset
211 >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1
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dave
parents:
diff changeset
212 ------------------------------------------------------------
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dave
parents:
diff changeset
213 ----------------------------------------CTACTATTGCTACTAATGGT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
214 ATAGGTTGCGTTACATGT---------------ACTACTTACTGCTTTGATAGA------
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parents:
diff changeset
215 -----------------------------------------------------GAAGCTT
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parents:
diff changeset
216 GAT-----------------------------G
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
217 >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1
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parents:
diff changeset
218 --------------------------------------TCGGAGTCATTGTTGCTATTAC
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parents:
diff changeset
219 CACCATCTTTTGTTCATAGCAGCCCTGTAA------TATTTGATT---------------
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parents:
diff changeset
220 ------------------------------------------------------------
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dave
parents:
diff changeset
221 ------------------------------------------------------AACATC
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dave
parents:
diff changeset
222 TAA------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
223 >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1
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parents:
diff changeset
224 ---------------------------------------------------TTTGATTG-
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parents:
diff changeset
225 -ACTAACTCTGATTCACTTTGATCTTGTAG------TGCTTGAAT---------------
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parents:
diff changeset
226 ------------------------------------------------------------
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parents:
diff changeset
227 ------------------------------------------------------GATTCC
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parents:
diff changeset
228 TAATGCATAT-----TGTGA----------GTC
9a3a2e04f47a Uploaded
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parents:
diff changeset
229 >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1
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parents:
diff changeset
230 -----------------------CGAGCA-----AGCTTCACAGGAGTTAAA--------
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dave
parents:
diff changeset
231 -----------------------AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCG
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parents:
diff changeset
232 AACCCAGAT---------------------------------------------------
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parents:
diff changeset
233 ------------------------------------------------------------
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dave
parents:
diff changeset
234 ---------------------------------
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dave
parents:
diff changeset
235 >K03455|HIVHXB2CG_1717_2240_0_0_0_2_0_0_4b/1
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dave
parents:
diff changeset
236 --------------------------------------TCACAGGAGGTAAA--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
237 -----------------------AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
238 AACCCAGATTGTAAGA-----------------CTA------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
239 ------------------------------------------------------------
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dave
parents:
diff changeset
240 ---------------------------------
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dave
parents:
diff changeset
241 >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
242 ------------------------------------------------------------
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dave
parents:
diff changeset
243 -------------------------------TGACAGAAACCTAGTTGGTCCAAAATGCG
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dave
parents:
diff changeset
244 AACCCAGATTGTAAGA-----------------CAATTTTAAAAGCATTGGGACCAGC--
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
245 ------------------------------------------------------------
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dave
parents:
diff changeset
246 ---------------------------------
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dave
parents:
diff changeset
247 >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1
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dave
parents:
diff changeset
248 ------------------------------------------------------------
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dave
parents:
diff changeset
249 ------------------------------------------------------------
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dave
parents:
diff changeset
250 -----------------------------------ATTTTAAAAGCATTGGGACCAGCGG
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parents:
diff changeset
251 CTACACTAGAAGAAATGATGACAGCATGTCAGGGAG-------------TAGGATGAC--
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dave
parents:
diff changeset
252 ---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
253 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1
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dave
parents:
diff changeset
254 ------------------------------------------------------------
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dave
parents:
diff changeset
255 ------------------------------------CTACCTCTTCTTCTGCTAGACTGC
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parents:
diff changeset
256 C-----------------------------------ATTTAACAGCAGTTGAGTTGATA-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
257 ---------------------------------------------CTACTGGCCTAATTC
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parents:
diff changeset
258 CATGT--------------------------GT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
259 >K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1
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dave
parents:
diff changeset
260 ------------------------------------------------------------
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parents:
diff changeset
261 ----------------------TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGC
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parents:
diff changeset
262 A-----------------------------------GTCTAGCAGAAGAAGAGGTAGTA-
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parents:
diff changeset
263 ---------------------------------------------AT-------TAGATC
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dave
parents:
diff changeset
264 ---------------------------------
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dave
parents:
diff changeset
265 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1
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parents:
diff changeset
266 ---TAACG----------------------------------------------------
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parents:
diff changeset
267 -----------------CCACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGA
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parents:
diff changeset
268 AC---AA----------------------------GCCCCAGAAGACGAAGGG-------
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parents:
diff changeset
269 ------------------------------------------------------------
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dave
parents:
diff changeset
270 ---------------------------------
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dave
parents:
diff changeset
271 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1
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parents:
diff changeset
272 GTGGAGA-----------------------------------------------------
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parents:
diff changeset
273 ------------------------GAGAGACAGAGACAGATCCATTCGATTAGTGAACGG
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parents:
diff changeset
274 ATCC----------------------------------TTGGCACTTATCTGGGA-----
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parents:
diff changeset
275 ------------------------------------------------------CGATCT
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parents:
diff changeset
276 ---------------------------------
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parents:
diff changeset
277 >K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1
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dave
parents:
diff changeset
278 TCCGAAGA----------------------------------------------------
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parents:
diff changeset
279 -----------------TCGTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGG
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parents:
diff changeset
280 ATCTGA------------------------------CTCTGTCTCT--------------
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parents:
diff changeset
281 ---------------------------------------------------------CTC
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parents:
diff changeset
282 ---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
283 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1
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dave
parents:
diff changeset
284 CCAAGTA-----------------------------------------------------
9a3a2e04f47a Uploaded
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parents:
diff changeset
285 ---------------------TCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGG
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parents:
diff changeset
286 AGCCAAA----------------------------TCCTAGGAAAATGTCTA--------
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parents:
diff changeset
287 ------------------------------------------------------------
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dave
parents:
diff changeset
288 ---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
289 >K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1
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parents:
diff changeset
290 -----TA-----------------------------------------------------
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dave
parents:
diff changeset
291 ---------------------TCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGG
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parents:
diff changeset
292 AGCCAAA----------------------------TCCTAGGAAAATGTCTAAC------
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parents:
diff changeset
293 ---------------------------------------------------------AGC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
294 ---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
295 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1
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dave
parents:
diff changeset
296 ----TGC-----------------------------------------------------
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dave
parents:
diff changeset
297 ---------------------TCTGAAGAAAATTCCCTG----GCCTTCCCTTGTAGTAA
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parents:
diff changeset
298 GGCCATA----------------------------TCTTCCCTAAAAAATTAGC------
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parents:
diff changeset
299 ---------------------------------------------------------CTG
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dave
parents:
diff changeset
300 TCT------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
301 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
302 AAGTGCAA----------------------------------------------------
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dave
parents:
diff changeset
303 -----------------------------------GCAATCTGATTCACCCGATTTCTTC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
304 C-----------------------------------AATTATGATGACAGGTGTAGGTC-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
305 ---------------------------------------------CTACTAATACAGT--
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
306 ---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
307 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1
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parents:
diff changeset
308 GAT---------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
309 -----------------------------------------------GGTTTTATAGACA
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dave
parents:
diff changeset
310 TCA---------------------------------CTATGAAAGCCCTCATCCAAGAAA
9a3a2e04f47a Uploaded
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parents:
diff changeset
311 -----------------AAGTTCAGAAGTACACA------------------TCCCACTA
9a3a2e04f47a Uploaded
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parents:
diff changeset
312 GG-------------------------------
9a3a2e04f47a Uploaded
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parents:
diff changeset
313 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
314 AA----------------------------------------------------------
9a3a2e04f47a Uploaded
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parents:
diff changeset
315 --------------------------------------------------TTTATCAAGA
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dave
parents:
diff changeset
316 GCC---------------------------------ATTTAAAAATCTGAAAACAGGAAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
317 -----------------ATATGCAAGAATGAGGGG--------------TGCCCACACTA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
318 AT-------------------------------
9a3a2e04f47a Uploaded
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parents:
diff changeset
319 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
320 AATTG----TGGGTCACAGTCT--------------ATTATGGGGTACC-----------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
321 -------TGTGTGGC---------AGGAAGCAACCACCACTCTATT--------------
9a3a2e04f47a Uploaded
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parents:
diff changeset
322 ------------------------------------------TTGTGCATC---------
9a3a2e04f47a Uploaded
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parents:
diff changeset
323 ------------------------------------------------------------
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dave
parents:
diff changeset
324 ---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
325 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
326 AGCAGA--ATAGGCGTTACTCG--------------ACAGAGGAGAGCA-----------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
327 -------AGAAATGT---------AGCCAGTAGATCCTAGACTAT---------------
9a3a2e04f47a Uploaded
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parents:
diff changeset
328 -------------------------------------------AGCCCTGG---------
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parents:
diff changeset
329 ------------------------------------------------------------
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dave
parents:
diff changeset
330 ---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
331 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
332 -------------------------------------------GGAGCT-----------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
333 -------AGAACGAT---------TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
334 GCT---------------------------------GTAGACAAATACTGGGA-------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
335 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
336 ---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
337 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
338 ----GAGGGGGAGTTGTTGTCT--------------GTACCCCAGACCT-----------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
339 -------GAAGCTCTCTTCTTGTGGGGCTGTTGGCTCTGGTCTGCT--------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
340 ------------------------------------------------------------
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dave
parents:
diff changeset
341 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
342 ---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
343 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
344 TTCTGAGGGGGAGATGTTGTCT--------------CTAGCCCAGACCT-----------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
345 -------GAAGCTCTCTTCTGGTGGGGCAGTTGGCTCTGGTC------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
346 ------------------------------------------------------------
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dave
parents:
diff changeset
347 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
348 ---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
349 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
350 A------------------------------------------GGGATTATG--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
351 ------GAAAACAGA---------TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
352 AGG---------------------------------ATTAGAACATGG------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
353 ------------------------------------------------------------
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dave
parents:
diff changeset
354 ---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
355 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
356 ------------CGGGCACAC---------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
357 --------ACT--------ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
358 TGG---------------------------------GTTCCCTAG--TTAGC--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
359 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
360 ---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
361 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
362 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
363 --------------------CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
364 TGG---------------------------------GTTCCCTAG--TTAGCCAGA----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
365 -----------------------------------------------------GAGCTCC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
366 CA-------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
367 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
368 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
369 ----------------TGCTGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
370 GCC---------------------------------ATCCAATCACACTACATATT----
9a3a2e04f47a Uploaded
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parents:
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371 --------------------------------------------------------GACC
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parents:
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372 AC-------------------------------
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parents:
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373 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
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parents:
diff changeset
374 ------------GCTGCTCCC---------------------------------------
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parents:
diff changeset
375 --------ACCCTATCTTGTGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAG
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parents:
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376 GCC---------------------------------ATCCAATCA---------------
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parents:
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377 ------------------------------------------------------------
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parents:
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378 ---------------------------------
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parents:
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379 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
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parents:
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380 ------------------------------------------------------------
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parents:
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381 -------------------TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACAC
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parents:
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382 CCA---------------------------------ATTCTGAAA--CTGGATAAA----
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parents:
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383 ---------------------------------------------------CAGCAGTTG
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parents:
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384 TT-------------------------------
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parents:
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385 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
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parents:
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386 ------------------------------------------------------------
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387 ---------------------------------------------------TGCCAAGGA
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parents:
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388 TCC---------------------------------GTTCACTAA--TCGAATGGA----
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parents:
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389 ----------------------TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTC
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parents:
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390 CT-------------------------------
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parents:
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391 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
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parents:
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392 ------------------------------------------------------------
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parents:
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393 -------------------TTCTGGGAAGTTCAAT----------------TAGGAATAC
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parents:
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394 CAC---------------------------------ATCCCGCAGGGTTAAAAAAG----
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parents:
diff changeset
395 ----------------------AAAAAATCAGT------------------AACAGTACT
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396 GG-------------------------------
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397 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
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398 ------------------------------------------------------------
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399 -------------------CTATG------TTTAC----------------TTCTAATCC
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parents:
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400 CGA---------------------------------ATCCTGCAAAGCTAGATAAAT---
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401 ------------------TGCTTGTAACTCAGTC-----------------TTCTGATTT
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402 GT-------------------------------
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403 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
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404 ------------C------ACTTATTAAA-----AGAAAAGGGGGGACTGGA--------
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405 ------AGGGCTAATTCACTCCCAAAGAAGACAAG----ATATCCTTGATC---------
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parents:
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406 ------------------------------------------------------------
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407 ------------------------------------------------------------
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408 ---------------------------------
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409 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
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410 ------------------------TTAAA-----AGAAAAGGGGGGACTGGA--------
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411 ------AGGGCTAATTCACTGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA---
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parents:
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412 ------------------------------------------------------------
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413 ------------------------------------------------------------
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parents:
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414 ---------------------------------
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parents:
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415 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
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parents:
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416 ------------------------------------------------------------
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parents:
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417 --------GGCTAATTCACTCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGT
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parents:
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418 ACC---------------------------------ACCCACAAG---------------
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419 ----------------------------------------------------GCTACTTC
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parents:
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420 CC-------------------------------
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parents:
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421 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
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parents:
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422 --------------------------------------ACAACGGAATTGG---------
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parents:
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423 --------AGGAAATGAACCAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGT
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parents:
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424 ACT---------------------------------ATTTTT------------------
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parents:
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425 ------------------------------------------------------------
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parents:
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426 ---------------------------------
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parents:
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427 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
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parents:
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428 ----------------------------------------AATAGTACTTT---------
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parents:
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429 --------CCTGATTCCAGCACTGACTAAATTATC----TACTTGTTCATTTCCTCCAAT
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parents:
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430 TCC---------------------------------TTTGTGTG----------------
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431 ------------------------------------------------------------
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parents:
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432 ---------------------------------
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parents:
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433 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
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parents:
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434 ----------------------------------GAAGAAGCGGAGACAGC---------
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parents:
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435 --------GACGAAGAGCTCATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAA
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parents:
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436 ATC---------------------------------AG----------------------
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parents:
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437 ------------------------------------------------------------
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parents:
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438 ---------------------------------
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parents:
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439 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
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parents:
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440 --------------------CTATGGCAG-----GAAGAAGCGGAGACAGC---------
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parents:
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441 --------GACGAAGAGCTCATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA----
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442 ------------------------------------------------------------
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443 ------------------------------------------------------------
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parents:
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444 ---------------------------------
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parents:
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445 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
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parents:
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446 ----------------------------------------------ACAGC---------
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parents:
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447 --------GACGAAGAGCTCATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAA
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448 AGC---------------------------------AGTAAGTA----------------
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449 -----------------------------------------------------TTACAT-
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450 ---------------------------------
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parents:
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451 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1
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parents:
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452 ------------------------------------------------------------
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453 --------------------------------------------------------AGCC
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454 ATT---------------------------------GCTCTCCAA--TTACTGTGA----
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parents:
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455 ----------------------TATTTCTCATGTTCATCTTGGGCCTT----AACTATTC
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parents:
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456 CATCTA----------------------AAAAT