freebayes: test-data/freebayes-phix174-test3.vcf annotate

annotate test-data/freebayes-phix174-test3.vcf @ 0:5af352c58c24 draft default tip

Uploaded

author	dave
date	Wed, 02 Oct 2019 09:26:15 -0400
parents
children

rev	line source
0 5af352c58c24 Uploaded dave parents: diff changeset	1 ##fileformat=VCFv4.2
5af352c58c24 Uploaded dave parents: diff changeset	2 ##fileDate=20190805
5af352c58c24 Uploaded dave parents: diff changeset	3 ##source=freeBayes v1.3.1-dirty
5af352c58c24 Uploaded dave parents: diff changeset	4 ##reference=localref.fa
5af352c58c24 Uploaded dave parents: diff changeset	5 ##contig=<ID=phiX174,length=5386>
5af352c58c24 Uploaded dave parents: diff changeset	6 ##phasing=none
5af352c58c24 Uploaded dave parents: diff changeset	7 ##commandline="freebayes --region phiX174:0..5386 --bam b_0.bam --fasta-reference localref.fa --vcf ./vcf_output/part_phiX174:0..5386.vcf --haplotype-length 0 --min-alternate-count 1 --min-alternate-fraction 0.05 --pooled-continuous --report-monomorphic --standard-filters"
5af352c58c24 Uploaded dave parents: diff changeset	8 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
5af352c58c24 Uploaded dave parents: diff changeset	9 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
5af352c58c24 Uploaded dave parents: diff changeset	10 ##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype">
5af352c58c24 Uploaded dave parents: diff changeset	11 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
5af352c58c24 Uploaded dave parents: diff changeset	12 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
5af352c58c24 Uploaded dave parents: diff changeset	13 ##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
5af352c58c24 Uploaded dave parents: diff changeset	14 ##INFO=<ID=RO,Number=1,Type=Integer,Description="Count of full observations of the reference haplotype.">
5af352c58c24 Uploaded dave parents: diff changeset	15 ##INFO=<ID=AO,Number=A,Type=Integer,Description="Count of full observations of this alternate haplotype.">
5af352c58c24 Uploaded dave parents: diff changeset	16 ##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally">
5af352c58c24 Uploaded dave parents: diff changeset	17 ##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally">
5af352c58c24 Uploaded dave parents: diff changeset	18 ##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred">
5af352c58c24 Uploaded dave parents: diff changeset	19 ##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred">
5af352c58c24 Uploaded dave parents: diff changeset	20 ##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations">
5af352c58c24 Uploaded dave parents: diff changeset	21 ##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations">
5af352c58c24 Uploaded dave parents: diff changeset	22 ##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
5af352c58c24 Uploaded dave parents: diff changeset	23 ##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
5af352c58c24 Uploaded dave parents: diff changeset	24 ##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand">
5af352c58c24 Uploaded dave parents: diff changeset	25 ##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand">
5af352c58c24 Uploaded dave parents: diff changeset	26 ##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
5af352c58c24 Uploaded dave parents: diff changeset	27 ##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
5af352c58c24 Uploaded dave parents: diff changeset	28 ##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
5af352c58c24 Uploaded dave parents: diff changeset	29 ##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
5af352c58c24 Uploaded dave parents: diff changeset	30 ##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
5af352c58c24 Uploaded dave parents: diff changeset	31 ##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
5af352c58c24 Uploaded dave parents: diff changeset	32 ##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
5af352c58c24 Uploaded dave parents: diff changeset	33 ##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele">
5af352c58c24 Uploaded dave parents: diff changeset	34 ##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele">
5af352c58c24 Uploaded dave parents: diff changeset	35 ##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
5af352c58c24 Uploaded dave parents: diff changeset	36 ##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
5af352c58c24 Uploaded dave parents: diff changeset	37 ##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio. Ratio between depth in samples with each called alternate allele and those without.">
5af352c58c24 Uploaded dave parents: diff changeset	38 ##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
5af352c58c24 Uploaded dave parents: diff changeset	39 ##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout.">
5af352c58c24 Uploaded dave parents: diff changeset	40 ##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
5af352c58c24 Uploaded dave parents: diff changeset	41 ##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing. Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
5af352c58c24 Uploaded dave parents: diff changeset	42 ##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
5af352c58c24 Uploaded dave parents: diff changeset	43 ##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
5af352c58c24 Uploaded dave parents: diff changeset	44 ##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
5af352c58c24 Uploaded dave parents: diff changeset	45 ##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
5af352c58c24 Uploaded dave parents: diff changeset	46 ##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
5af352c58c24 Uploaded dave parents: diff changeset	47 ##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
5af352c58c24 Uploaded dave parents: diff changeset	48 ##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
5af352c58c24 Uploaded dave parents: diff changeset	49 ##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
5af352c58c24 Uploaded dave parents: diff changeset	50 ##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record.">
5af352c58c24 Uploaded dave parents: diff changeset	51 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
5af352c58c24 Uploaded dave parents: diff changeset	52 ##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
5af352c58c24 Uploaded dave parents: diff changeset	53 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
5af352c58c24 Uploaded dave parents: diff changeset	54 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
5af352c58c24 Uploaded dave parents: diff changeset	55 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele">
5af352c58c24 Uploaded dave parents: diff changeset	56 ##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
5af352c58c24 Uploaded dave parents: diff changeset	57 ##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
5af352c58c24 Uploaded dave parents: diff changeset	58 ##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
5af352c58c24 Uploaded dave parents: diff changeset	59 ##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
5af352c58c24 Uploaded dave parents: diff changeset	60 ##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
5af352c58c24 Uploaded dave parents: diff changeset	61 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT unknown
5af352c58c24 Uploaded dave parents: diff changeset	62 phiX174 10 . C . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	63 phiX174 11 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=36;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:36:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	64 phiX174 12 . C . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=35;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:35:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	65 phiX174 13 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=61;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:61:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	66 phiX174 14 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	67 phiX174 15 . C . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=119;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:119:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	68 phiX174 16 . C . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=89;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:89:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	69 phiX174 17 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=107;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:107:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	70 phiX174 18 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=117;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:117:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	71 phiX174 19 . G . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=109;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:109:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	72 phiX174 20 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=103;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:103:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	73 phiX174 21 . C . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=98;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:98:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	74 phiX174 22 . G . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=120;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:120:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	75 phiX174 23 . C . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=111;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:111:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	76 phiX174 24 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=120;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:120:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	77 phiX174 25 . G . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=111;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:111:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	78 phiX174 26 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=119;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:119:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	79 phiX174 27 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	80 phiX174 28 . G . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	81 phiX174 29 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	82 phiX174 30 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=102;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:102:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	83 phiX174 31 . A . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=110;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:110:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	84 phiX174 32 . A G 1.32936 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=1.60509;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31;QR=71;RO=1;RPL=1;RPP=5.18177;RPPR=5.18177;RPR=0;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=0;SRP=5.18177;SRR=1;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:71:1:31:-2.40069,0,-3.09777
5af352c58c24 Uploaded dave parents: diff changeset	85 phiX174 33 . C . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=127;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:127:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	86 phiX174 34 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=68;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:68:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	87 phiX174 35 . C . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=94;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:94:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	88 phiX174 36 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=115;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:115:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	89 phiX174 37 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=109;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:109:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	90 phiX174 38 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=9.52472;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=181;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:181:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	91 phiX174 39 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=9.52472;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=192;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:192:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	92 phiX174 40 . G . 1.00788e-15 . DP=3;DPB=3;EPPR=9.52472;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	93 phiX174 41 . G . 1.00788e-15 . DP=3;DPB=3;EPPR=9.52472;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=208;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:208:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	232 phiX174 180 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	278 phiX174 226 . T . 2.64107e-15 . DP=8;DPB=8;EPPR=20.3821;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=373;RO=8;RPPR=12.7819 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8:8:373:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	279 phiX174 227 . T . 2.64107e-15 . DP=8;DPB=8;EPPR=20.3821;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=375;RO=8;RPPR=12.7819 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8:8:375:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	283 phiX174 231 . T . 3.53359e-15 . DP=6;DPB=6;EPPR=16.0391;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=399;RO=6;RPPR=8.80089 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:399:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	546 phiX174 494 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	549 phiX174 497 . T G 0.0584234 . AB=0.2;ABP=6.91895;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=4.30186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36;QR=202;RO=4;RPL=0;RPP=5.18177;RPPR=5.18177;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=0;SRP=11.6962;SRR=4;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:202:1:36:-1.841,0,-11.7837
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5af352c58c24 Uploaded dave parents: diff changeset	557 phiX174 505 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=245;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:245:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	558 phiX174 506 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=271;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:271:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	561 phiX174 509 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	563 phiX174 511 . A . 3.53359e-15 . DP=6;DPB=6;EPPR=8.80089;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=382;RO=6;RPPR=8.80089 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:382:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	564 phiX174 512 . A . 3.53359e-15 . DP=6;DPB=6;EPPR=8.80089;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=373;RO=6;RPPR=8.80089 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:373:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1026 phiX174 978 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=36;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:36:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1032 phiX174 984 . T . 0 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1036 phiX174 988 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=111;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:111:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1037 phiX174 989 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1043 phiX174 995 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=121;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:121:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1048 phiX174 1000 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=118;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:118:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1052 phiX174 1004 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1053 phiX174 1005 . C . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1054 phiX174 1006 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1521 phiX174 1474 . T G 0.00362235 . AB=0.166667;ABP=8.80089;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=5.18177;EPPR=6.91895;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=7.08877;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27;QR=287;RO=5;RPL=0;RPP=5.18177;RPPR=6.91895;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=3;SRP=3.44459;SRR=2;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:287:1:27:-0.852506,0,-14.2907
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5af352c58c24 Uploaded dave parents: diff changeset	1523 phiX174 1476 . A . 1.60117e-15 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=385;RO=6;RPPR=8.80089 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:385:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1524 phiX174 1477 . T . 1.60117e-15 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=295;RO=6;RPPR=8.80089 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:295:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1526 phiX174 1479 . G A 0.00362235 . AB=0.166667;ABP=8.80089;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=5.18177;EPPR=6.91895;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=7.08877;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27;QR=317;RO=5;RPL=0;RPP=5.18177;RPPR=6.91895;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=3;SRP=3.44459;SRR=2;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:317:1:27:-0.852506,0,-15.0785
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5af352c58c24 Uploaded dave parents: diff changeset	1528 phiX174 1481 . T . 1.60117e-15 . DP=6;DPB=6;EPPR=8.80089;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=366;RO=6;RPPR=4.45795 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:366:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1530 phiX174 1483 . C . 1.60117e-15 . DP=6;DPB=6;EPPR=8.80089;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=424;RO=6;RPPR=4.45795 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:424:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1828 phiX174 1781 . T . 0 . DP=7;DPB=7;EPPR=3.32051;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=392;RO=7;RPPR=5.80219 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7:7:392:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1829 phiX174 1782 . T . 0 . DP=7;DPB=7;EPPR=3.32051;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=379;RO=7;RPPR=5.80219 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7:7:379:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1830 phiX174 1783 . T . 0 . DP=7;DPB=7;EPPR=3.32051;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=380;RO=7;RPPR=5.80219 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7:7:380:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1834 phiX174 1787 . G . 3.53359e-15 . DP=6;DPB=6;EPPR=8.80089;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=374;RO=6;RPPR=8.80089 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:374:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1835 phiX174 1788 . G . 3.53359e-15 . DP=6;DPB=6;EPPR=8.80089;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=426;RO=6;RPPR=8.80089 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:426:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1836 phiX174 1789 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=338;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:338:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1837 phiX174 1790 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=269;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:269:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1840 phiX174 1793 . G . 0 . DP=6;DPB=6;EPPR=16.0391;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=426;RO=6;RPPR=4.45795 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:426:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1841 phiX174 1794 . T . 0 . DP=6;DPB=6;EPPR=16.0391;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=415;RO=6;RPPR=4.45795 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:415:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1844 phiX174 1797 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=11.6962;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=265;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:265:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1847 phiX174 1800 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=330;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:330:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1850 phiX174 1803 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1851 phiX174 1804 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=352;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:352:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1852 phiX174 1805 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1857 phiX174 1810 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1858 phiX174 1811 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=9.52472;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1867 phiX174 1820 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1908 phiX174 1861 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=254;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:254:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1909 phiX174 1862 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=250;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:250:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1910 phiX174 1863 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1914 phiX174 1867 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=261;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:261:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1917 phiX174 1870 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	1919 phiX174 1872 . G . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1920 phiX174 1873 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1921 phiX174 1874 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=199;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:199:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1922 phiX174 1875 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1923 phiX174 1876 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1924 phiX174 1877 . C . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1925 phiX174 1878 . C . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1926 phiX174 1879 . G . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1927 phiX174 1889 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1928 phiX174 1890 . C . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=55;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:55:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1929 phiX174 1891 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=36;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:36:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1930 phiX174 1892 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1931 phiX174 1893 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1932 phiX174 1894 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1933 phiX174 1895 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1934 phiX174 1896 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=64;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:64:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1935 phiX174 1897 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1936 phiX174 1898 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=43;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:43:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1937 phiX174 1899 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=37;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:37:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1938 phiX174 1900 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=36;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:36:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1939 phiX174 1901 . C . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=66;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:66:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1940 phiX174 1902 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1941 phiX174 1903 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1942 phiX174 1904 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1943 phiX174 1905 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1944 phiX174 1906 . C . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1945 phiX174 1907 . C . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1946 phiX174 1908 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=100;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:100:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1947 phiX174 1909 . T G 5.59746 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=0.844008;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35;QR=30;RO=1;RPL=1;RPP=5.18177;RPPR=5.18177;RPR=0;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=0;SRP=5.18177;SRR=1;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:30:1:35:-2.68555,0,-2.319
5af352c58c24 Uploaded dave parents: diff changeset	1948 phiX174 1910 . A . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=122;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:122:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1949 phiX174 1911 . A . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=115;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:115:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1950 phiX174 1912 . C . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1951 phiX174 1913 . G C 0.0734217 . AB=0.2;ABP=6.91895;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=4.07162;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38;QR=247;RO=4;RPL=0;RPP=5.18177;RPPR=5.18177;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=2;SRP=3.0103;SRR=2;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:247:1:38:-1.94099,0,-11.7437
5af352c58c24 Uploaded dave parents: diff changeset	1952 phiX174 1914 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=280;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:280:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1953 phiX174 1915 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=340;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:340:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1954 phiX174 1916 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=322;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:322:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1955 phiX174 1917 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=327;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:327:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1956 phiX174 1918 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=314;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:314:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1957 phiX174 1919 . G T 0.0376705 . AB=0.2;ABP=6.91895;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=4.74309;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33;QR=284;RO=4;RPL=0;RPP=5.18177;RPPR=5.18177;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=2;SRP=3.0103;SRR=2;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:284:1:33:-1.64937,0,-12.1842
5af352c58c24 Uploaded dave parents: diff changeset	1958 phiX174 1920 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1959 phiX174 1921 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=333;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:333:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1960 phiX174 1922 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1961 phiX174 1923 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=285;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:285:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1962 phiX174 1924 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=322;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:322:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1963 phiX174 1925 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=265;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:265:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1964 phiX174 1926 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=232;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:232:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1965 phiX174 1927 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=243;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:243:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1966 phiX174 1928 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=191;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:191:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1967 phiX174 1929 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=266;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:266:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1968 phiX174 1930 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=248;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:248:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1969 phiX174 1931 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=240;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:240:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1970 phiX174 1932 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=246;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:246:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1971 phiX174 1933 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1972 phiX174 1934 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=329;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:329:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1973 phiX174 1935 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1974 phiX174 1936 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=280;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:280:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1975 phiX174 1937 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=332;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:332:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1976 phiX174 1938 . A C 0.00544999 . AB=0.166667;ABP=8.80089;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=5.18177;EPPR=3.44459;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=6.68007;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29;QR=311;RO=5;RPL=1;RPP=5.18177;RPPR=3.44459;RPR=0;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=1;SRP=6.91895;SRR=4;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:311:1:29:-1.03,0,-14.2552
5af352c58c24 Uploaded dave parents: diff changeset	1977 phiX174 1939 . T . 1.60117e-15 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=346;RO=6;RPPR=4.45795 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:346:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1978 phiX174 1940 . A . 1.60117e-15 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=395;RO=6;RPPR=4.45795 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:395:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1979 phiX174 1941 . T . 1.60117e-15 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=320;RO=6;RPPR=4.45795 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:320:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1980 phiX174 1942 . T G 0.0132875 . AB=0.166667;ABP=8.80089;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=5.18177;EPPR=3.44459;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=5.78795;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34;QR=308;RO=5;RPL=0;RPP=5.18177;RPPR=6.91895;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=2;SRP=3.44459;SRR=3;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:308:1:34:-1.41744,0,-14.9758
5af352c58c24 Uploaded dave parents: diff changeset	1981 phiX174 1943 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=345;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:345:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1982 phiX174 1944 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=342;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:342:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1983 phiX174 1945 . T G 0.0265938 . AB=0.2;ABP=6.91895;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=5.09257;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31;QR=263;RO=4;RPL=0;RPP=5.18177;RPPR=5.18177;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=2;SRP=3.0103;SRR=2;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:263:1:31:-1.4976,0,-12.1647
5af352c58c24 Uploaded dave parents: diff changeset	1984 phiX174 1946 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=294;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:294:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1985 phiX174 1947 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=312;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:312:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1986 phiX174 1948 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=289;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:289:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1987 phiX174 1949 . G . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1988 phiX174 1950 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=103;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:103:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1989 phiX174 1951 . C . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1990 phiX174 1952 . C . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=141;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:141:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1991 phiX174 1953 . C . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1992 phiX174 1954 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=113;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:113:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1993 phiX174 1955 . G . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1994 phiX174 1956 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1995 phiX174 1957 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1996 phiX174 1958 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1997 phiX174 1959 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=128;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:128:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1998 phiX174 1960 . G . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	1999 phiX174 1961 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2000 phiX174 1962 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2001 phiX174 1963 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2002 phiX174 1964 . G . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2003 phiX174 1965 . G . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2004 phiX174 1966 . C . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2005 phiX174 1967 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2006 phiX174 1968 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=113;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:113:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2007 phiX174 1969 . C . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2008 phiX174 1970 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2009 phiX174 1971 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2010 phiX174 1972 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2011 phiX174 1973 . C . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2012 phiX174 1978 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2013 phiX174 1979 . C . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=34;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:34:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2014 phiX174 1980 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2015 phiX174 1981 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2016 phiX174 1982 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2017 phiX174 1983 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2018 phiX174 1984 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2019 phiX174 1985 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2020 phiX174 1986 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2021 phiX174 1987 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2022 phiX174 1988 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2023 phiX174 1989 . C . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2024 phiX174 1990 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2025 phiX174 1991 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2026 phiX174 1992 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2027 phiX174 1993 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2028 phiX174 1994 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2029 phiX174 1995 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2030 phiX174 1996 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2031 phiX174 1997 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2032 phiX174 1998 . A . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=46;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:46:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2033 phiX174 1999 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2034 phiX174 2000 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2035 phiX174 2001 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2036 phiX174 2002 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2037 phiX174 2003 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2038 phiX174 2004 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2039 phiX174 2005 . C . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2040 phiX174 2006 . C . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2041 phiX174 2007 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2042 phiX174 2008 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2043 phiX174 2009 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2044 phiX174 2010 . C . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2045 phiX174 2011 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2046 phiX174 2012 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2047 phiX174 2013 . G . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=122;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:122:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2048 phiX174 2014 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=70;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:70:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2049 phiX174 2015 . G . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2050 phiX174 2016 . A C 1.32936 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=1.60509;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31;QR=71;RO=1;RPL=0;RPP=5.18177;RPPR=5.18177;RPR=1;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:71:1:31:-2.40069,0,-3.09777
5af352c58c24 Uploaded dave parents: diff changeset	2051 phiX174 2017 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=9.52472;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2052 phiX174 2018 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=9.52472;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2053 phiX174 2019 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=9.52472;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=209;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:209:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2054 phiX174 2020 . G . 1.00788e-15 . DP=3;DPB=3;EPPR=9.52472;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2055 phiX174 2021 . T . 0 . DP=4;DPB=4;EPPR=11.6962;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2056 phiX174 2022 . C . 0 . DP=4;DPB=4;EPPR=11.6962;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2057 phiX174 2023 . T . 0 . DP=4;DPB=4;EPPR=11.6962;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2058 phiX174 2024 . A . 0 . DP=4;DPB=4;EPPR=11.6962;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2059 phiX174 2025 . A . 0 . DP=4;DPB=4;EPPR=11.6962;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2060 phiX174 2026 . G . 0 . DP=4;DPB=4;EPPR=11.6962;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2061 phiX174 2027 . A . 0 . DP=4;DPB=4;EPPR=11.6962;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=240;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:240:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2062 phiX174 2028 . A . 0 . DP=4;DPB=4;EPPR=11.6962;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=243;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:243:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2063 phiX174 2029 . G . 0 . DP=4;DPB=4;EPPR=11.6962;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=282;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:282:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2064 phiX174 2030 . T . 0 . DP=4;DPB=4;EPPR=11.6962;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=249;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:249:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2065 phiX174 2031 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=291;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:291:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2066 phiX174 2032 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=295;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:295:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2067 phiX174 2033 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=325;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:325:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2068 phiX174 2034 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=274;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:274:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2069 phiX174 2035 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=344;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:344:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2070 phiX174 2036 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=299;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:299:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2071 phiX174 2037 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=324;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:324:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2072 phiX174 2038 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=322;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:322:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2073 phiX174 2039 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=13.8677;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2074 phiX174 2040 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=13.8677;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=317;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:317:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2075 phiX174 2041 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=13.8677;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=288;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:288:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2076 phiX174 2042 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=13.8677;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=347;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:347:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2077 phiX174 2043 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=13.8677;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=303;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:303:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2078 phiX174 2044 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=13.8677;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=338;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:338:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2079 phiX174 2045 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=13.8677;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=313;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:313:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2080 phiX174 2046 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=13.8677;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=335;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:335:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2081 phiX174 2047 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=13.8677;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=300;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:300:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2082 phiX174 2048 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=13.8677;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=328;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:328:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2358 phiX174 2324 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2359 phiX174 2325 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2360 phiX174 2326 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2361 phiX174 2327 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2362 phiX174 2328 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=135;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:135:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2363 phiX174 2329 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2364 phiX174 2330 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2367 phiX174 2333 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2368 phiX174 2334 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2415 phiX174 2388 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2417 phiX174 2390 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2420 phiX174 2393 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=40;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:40:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2423 phiX174 2396 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=94;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:94:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2425 phiX174 2398 . T G 3.02104 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=0.56479;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38;QR=54;RO=1;RPL=1;RPP=5.18177;RPPR=5.18177;RPR=0;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=0;SRP=5.18177;SRR=1;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:54:1:38:-2.84408,0,-3.08936
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5af352c58c24 Uploaded dave parents: diff changeset	2429 phiX174 2402 . A . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2430 phiX174 2403 . G . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2431 phiX174 2404 . A T 0.249592 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=5.18177;EPPR=3.0103;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=2.8308;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31;QR=131;RO=2;RPL=0;RPP=5.18177;RPPR=3.0103;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=0;SRP=7.35324;SRR=2;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:2,1:2:131:1:31:-2.09966,0,-6.12468
5af352c58c24 Uploaded dave parents: diff changeset	2432 phiX174 2405 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=201;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:201:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2433 phiX174 2406 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=197;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:197:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2434 phiX174 2407 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2435 phiX174 2408 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2436 phiX174 2409 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2437 phiX174 2410 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2438 phiX174 2411 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2439 phiX174 2412 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2442 phiX174 2415 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2443 phiX174 2416 . C . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2446 phiX174 2419 . C . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2447 phiX174 2420 . A . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2448 phiX174 2421 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=181;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:181:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2449 phiX174 2422 . A . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=173;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:173:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2450 phiX174 2423 . A . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2451 phiX174 2424 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2452 phiX174 2425 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2453 phiX174 2426 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2454 phiX174 2427 . A . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=176;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:176:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2457 phiX174 2430 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=268;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:268:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2458 phiX174 2431 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=128;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:128:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2459 phiX174 2432 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=243;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:243:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2479 phiX174 2452 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=324;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:324:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2481 phiX174 2454 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=330;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:330:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2483 phiX174 2456 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2484 phiX174 2457 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2485 phiX174 2458 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2539 phiX174 2512 . T . 1.60117e-15 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=385;RO=6;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:385:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2540 phiX174 2513 . C . 1.60117e-15 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=354;RO=6;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:354:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2543 phiX174 2516 . C . 1.60117e-15 . DP=6;DPB=6;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=400;RO=6;RPPR=4.45795 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:400:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2590 phiX174 2563 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2620 phiX174 2593 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=322;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:322:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2622 phiX174 2595 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2625 phiX174 2598 . C . 1.60117e-15 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=411;RO=6;RPPR=8.80089 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:411:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2630 phiX174 2603 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=306;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:306:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2631 phiX174 2604 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=289;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:289:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2642 phiX174 2615 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=329;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:329:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2643 phiX174 2616 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=181;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:181:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2645 phiX174 2618 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=153;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:153:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2646 phiX174 2619 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=177;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:177:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2647 phiX174 2620 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=222;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:222:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2649 phiX174 2622 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=242;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:242:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2655 phiX174 2628 . T . 0 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=394;RO=6;RPPR=4.45795 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:394:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2688 phiX174 2661 . C . 3.53359e-15 . DP=6;DPB=6;EPPR=8.80089;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=426;RO=6;RPPR=8.80089 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:426:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2732 phiX174 2705 . C . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2745 phiX174 2718 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2747 phiX174 2720 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2748 phiX174 2721 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2749 phiX174 2722 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=118;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:118:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2750 phiX174 2723 . A . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2751 phiX174 2724 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	2752 phiX174 2725 . C . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2754 phiX174 2727 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2918 phiX174 2904 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2953 phiX174 2939 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	2959 phiX174 2945 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=119;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:119:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3115 phiX174 3101 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3131 phiX174 3117 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3133 phiX174 3119 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3136 phiX174 3122 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=255;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:255:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3141 phiX174 3127 . A C 0.0318059 . AB=0.2;ABP=6.91895;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=4.91299;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32;QR=284;RO=4;RPL=1;RPP=5.18177;RPPR=3.0103;RPR=0;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=1;SRP=5.18177;SRR=3;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:284:1:32:-1.57558,0,-12.1842
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5af352c58c24 Uploaded dave parents: diff changeset	3811 phiX174 3797 . T . 1.17009e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=296;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:296:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3814 phiX174 3800 . T . 1.17009e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=298;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:298:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3817 phiX174 3803 . T . 0 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=386;RO=6;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:386:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3818 phiX174 3804 . T . 0 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=352;RO=6;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:352:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3821 phiX174 3807 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3823 phiX174 3809 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=223;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:223:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3824 phiX174 3810 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=11.6962;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=278;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:278:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3825 phiX174 3811 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=11.6962;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3826 phiX174 3812 . G . 1.00788e-15 . DP=3;DPB=3;EPPR=9.52472;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=175;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:175:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3828 phiX174 3814 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=217;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:217:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3829 phiX174 3815 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=251;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:251:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3830 phiX174 3816 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=261;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:261:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3832 phiX174 3818 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=248;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:248:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3833 phiX174 3819 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=243;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:243:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3834 phiX174 3820 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=267;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:267:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3835 phiX174 3821 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=251;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:251:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3836 phiX174 3822 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3837 phiX174 3823 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=271;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:271:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3838 phiX174 3824 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=330;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:330:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3839 phiX174 3825 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=337;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:337:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3841 phiX174 3827 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=338;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:338:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3851 phiX174 3837 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=241;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:241:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3912 phiX174 3898 . C . 1.60117e-15 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=426;RO=6;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:426:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3918 phiX174 3904 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=290;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:290:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3920 phiX174 3906 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=182;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:182:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3921 phiX174 3907 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=262;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:262:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3922 phiX174 3908 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=188;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:188:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3926 phiX174 3912 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3928 phiX174 3914 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=311;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:311:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3929 phiX174 3915 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=254;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:254:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3930 phiX174 3916 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=282;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:282:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3931 phiX174 3917 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3932 phiX174 3918 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=204;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:204:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3933 phiX174 3919 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=169;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:169:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3934 phiX174 3920 . G . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=181;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:181:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	3936 phiX174 3922 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3937 phiX174 3923 . A . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3938 phiX174 3924 . G . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3939 phiX174 3925 . G . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3940 phiX174 3926 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3941 phiX174 3927 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=227;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:227:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3942 phiX174 3928 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=239;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:239:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3943 phiX174 3929 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=275;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:275:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3944 phiX174 3930 . A . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=187;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:187:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3945 phiX174 3931 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3946 phiX174 3932 . A . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=191;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:191:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3947 phiX174 3933 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3948 phiX174 3934 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=265;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:265:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3949 phiX174 3935 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3950 phiX174 3936 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=261;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:261:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3951 phiX174 3937 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3952 phiX174 3938 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3953 phiX174 3939 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3954 phiX174 3940 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3955 phiX174 3941 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=274;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:274:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3956 phiX174 3942 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=315;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:315:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3957 phiX174 3943 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=321;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:321:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	3958 phiX174 3944 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=296;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:296:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4018 phiX174 4004 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=56;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:56:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4024 phiX174 4010 . T . 0 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=180;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:180:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4030 phiX174 4016 . T . 0 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=169;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:169:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4036 phiX174 4022 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=105;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:105:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4037 phiX174 4023 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=111;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:111:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4038 phiX174 4024 . T . 0 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4039 phiX174 4025 . T . 0 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4043 phiX174 4029 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=108;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:108:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4045 phiX174 4031 . T G 5.14354 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=0.696671;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34;QR=30;RO=1;RPL=1;RPP=5.18177;RPPR=5.18177;RPR=0;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=1;SRP=5.18177;SRR=0;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:30:1:34:-2.62156,0,-2.319
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5af352c58c24 Uploaded dave parents: diff changeset	4051 phiX174 4037 . T . 0 . DP=2;DPB=2;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4055 phiX174 4041 . G A 1.54898 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=1.42551;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32;QR=71;RO=1;RPL=1;RPP=5.18177;RPPR=5.18177;RPR=0;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=0;SRP=5.18177;SRR=1;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:71:1:32:-2.47867,0,-3.09777
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5af352c58c24 Uploaded dave parents: diff changeset	4060 phiX174 4046 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=101;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:101:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4099 phiX174 4085 . T . 1.60117e-15 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=404;RO=6;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:404:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4100 phiX174 4086 . T . 1.60117e-15 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=422;RO=6;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:422:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4295 phiX174 4291 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4297 phiX174 4293 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4298 phiX174 4294 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=263;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:263:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4303 phiX174 4299 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=218;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:218:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4304 phiX174 4300 . A . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=202;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:202:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4313 phiX174 4309 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=256;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:256:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4354 phiX174 4350 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=9.52472;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4372 phiX174 4368 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4416 phiX174 4412 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4423 phiX174 4419 . G . 1.17009e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4425 phiX174 4421 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4427 phiX174 4423 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=188;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:188:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4428 phiX174 4424 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=202;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:202:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4429 phiX174 4425 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=173;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:173:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4437 phiX174 4433 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=325;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:325:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4446 phiX174 4442 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=304;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:304:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4514 phiX174 4510 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=283;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:283:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4519 phiX174 4515 . T . 1.17009e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=307;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:307:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4520 phiX174 4516 . T . 1.17009e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=330;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:330:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4521 phiX174 4517 . T . 1.60117e-15 . DP=6;DPB=6;EPPR=8.80089;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=358;RO=6;RPPR=4.45795 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:358:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4524 phiX174 4520 . T . 0 . DP=7;DPB=7;EPPR=5.80219;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=417;RO=7;RPPR=3.32051 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7:7:417:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4525 phiX174 4521 . A . 0 . DP=7;DPB=7;EPPR=5.80219;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=451;RO=7;RPPR=3.32051 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7:7:451:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4526 phiX174 4522 . T . 0 . DP=7;DPB=7;EPPR=5.80219;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=463;RO=7;RPPR=3.32051 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7:7:463:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4527 phiX174 4523 . T C 0.00193347 . AB=0.142857;ABP=10.7656;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.18177;EPPR=4.45795;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=7.71677;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30;QR=403;RO=6;RPL=1;RPP=5.18177;RPPR=3.0103;RPR=0;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=3;SRP=3.0103;SRR=3;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:403:1:30:-0.813853,0,-18.2116
5af352c58c24 Uploaded dave parents: diff changeset	4528 phiX174 4524 . C . 1.17009e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=313;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:313:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4529 phiX174 4525 . A . 1.17009e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=314;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:314:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4530 phiX174 4526 . G . 1.17009e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=294;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:294:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4531 phiX174 4527 . C . 1.17009e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=332;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:332:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4532 phiX174 4528 . G . 1.17009e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=269;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:269:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4533 phiX174 4529 . T . 1.17009e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=265;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:265:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4534 phiX174 4530 . T . 1.17009e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=301;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:301:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4535 phiX174 4531 . T . 1.17009e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=285;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:285:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4536 phiX174 4532 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=234;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:234:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4537 phiX174 4533 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=170;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:170:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4538 phiX174 4534 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=273;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:273:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4539 phiX174 4535 . G . 1.00788e-15 . DP=3;DPB=3;EPPR=9.52472;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4540 phiX174 4536 . A . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4541 phiX174 4537 . A . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4542 phiX174 4538 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4543 phiX174 4539 . G . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	4544 phiX174 4540 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4735 phiX174 4731 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4748 phiX174 4747 . G . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=174;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:174:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4752 phiX174 4751 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=325;RO=5;RPPR=13.8677 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:325:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4754 phiX174 4753 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=321;RO=5;RPPR=13.8677 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:321:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4758 phiX174 4757 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=264;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:264:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	4951 phiX174 4950 . C A 7.38945e-05 . AB=0.1;ABP=16.9077;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=10.9814;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33;QR=574;RO=9;RPL=0;RPP=5.18177;RPPR=5.18177;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=7;SRP=9.04217;SRR=2;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:574:1:33:-0.144222,0,-26.9858
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5af352c58c24 Uploaded dave parents: diff changeset	4956 phiX174 4955 . T G 0.000187557 . AB=0.111111;ABP=14.8328;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=5.18177;EPPR=4.09604;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=10.05;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31;QR=540;RO=8;RPL=1;RPP=5.18177;RPPR=4.09604;RPR=0;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=6;SRP=7.35324;SRR=2;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:540:1:31:-0.293477,0,-24.2108
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5af352c58c24 Uploaded dave parents: diff changeset	5007 phiX174 5006 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=331;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:331:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	5080 phiX174 5079 . A . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	5082 phiX174 5081 . C . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	5086 phiX174 5085 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=9.52472;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=199;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:199:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	5090 phiX174 5089 . T . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	5097 phiX174 5096 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=171;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:171:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	5101 phiX174 5100 . C . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=177;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:177:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5102 phiX174 5101 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=9.52472 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5103 phiX174 5102 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=11.6962 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5104 phiX174 5103 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=262;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:262:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5105 phiX174 5104 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=260;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:260:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5106 phiX174 5105 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5107 phiX174 5106 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5108 phiX174 5107 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	5110 phiX174 5109 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=315;RO=5;RPPR=6.91895 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:315:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5111 phiX174 5110 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=321;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:321:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5112 phiX174 5111 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=339;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:339:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5113 phiX174 5112 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=318;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:318:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5114 phiX174 5113 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=274;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:274:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5115 phiX174 5114 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=316;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:316:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5116 phiX174 5115 . A C 0.0441345 . AB=0.2;ABP=6.91895;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=5.18177;EPPR=3.0103;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=4.58398;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34;QR=264;RO=4;RPL=0;RPP=5.18177;RPPR=5.18177;RPR=1;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=3;SRP=5.18177;SRR=1;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:264:1:34:-1.71847,0,-12.1687
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5af352c58c24 Uploaded dave parents: diff changeset	5183 phiX174 5182 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=345;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:345:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5184 phiX174 5183 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5185 phiX174 5184 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=247;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:247:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5186 phiX174 5185 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5187 phiX174 5186 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=347;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:347:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5188 phiX174 5187 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=325;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:325:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5189 phiX174 5188 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=249;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:249:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5190 phiX174 5189 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=3.0103;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=268;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:268:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5191 phiX174 5190 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=242;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:242:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5192 phiX174 5191 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5193 phiX174 5192 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=328;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:328:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5194 phiX174 5193 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5195 phiX174 5194 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5196 phiX174 5195 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=342;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:342:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5197 phiX174 5196 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=333;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:333:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5198 phiX174 5197 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=317;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:317:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5199 phiX174 5198 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=318;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:318:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5200 phiX174 5199 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=336;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:336:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5201 phiX174 5200 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=256;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:256:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5202 phiX174 5201 . A C 0.119414 . AB=0.25;ABP=5.18177;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=3.73412;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=3.57994;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33;QR=211;RO=3;RPL=0;RPP=5.18177;RPPR=3.73412;RPR=1;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=2;SRP=3.73412;SRR=1;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:3,1:3:211:1:33:-1.9504,0,-9.1553
5af352c58c24 Uploaded dave parents: diff changeset	5203 phiX174 5202 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=251;RO=4;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:251:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5204 phiX174 5203 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5205 phiX174 5204 . T . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=310;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:310:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5206 phiX174 5205 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=310;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:310:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5207 phiX174 5206 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=326;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:326:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5208 phiX174 5207 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5209 phiX174 5208 . A C 0.139682 . AB=0.25;ABP=5.18177;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=3.73412;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=3.42083;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34;QR=213;RO=3;RPL=1;RPP=5.18177;RPPR=3.73412;RPR=0;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:3,1:3:213:1:34:-2.0195,0,-9.1554
5af352c58c24 Uploaded dave parents: diff changeset	5210 phiX174 5209 . A . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=224;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:224:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5211 phiX174 5210 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5212 phiX174 5211 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5213 phiX174 5212 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=280;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:280:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5214 phiX174 5213 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=265;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:265:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5215 phiX174 5214 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5216 phiX174 5215 . G . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=213;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:213:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5217 phiX174 5216 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=159;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:159:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5218 phiX174 5217 . T . 1.00788e-15 . DP=3;DPB=3;EPPR=3.73412;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=160;RO=3;RPPR=3.73412 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3:3:160:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5219 phiX174 5218 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=329;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:329:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5220 phiX174 5219 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=3.44459;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=311;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:311:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5221 phiX174 5220 . G . 1.60117e-15 . DP=6;DPB=6;EPPR=4.45795;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=366;RO=6;RPPR=4.45795 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:366:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5222 phiX174 5221 . A . 1.60117e-15 . DP=6;DPB=6;EPPR=8.80089;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=426;RO=6;RPPR=3.0103 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6:6:426:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5223 phiX174 5222 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=355;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:355:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5224 phiX174 5223 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=324;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:324:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5225 phiX174 5224 . C . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=324;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:324:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5226 phiX174 5225 . G . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=336;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:336:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5227 phiX174 5226 . A . 1.15361e-16 . DP=5;DPB=5;EPPR=6.91895;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=329;RO=5;RPPR=3.44459 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5:5:329:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5228 phiX174 5227 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5229 phiX174 5228 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=252;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:252:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5230 phiX174 5229 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=249;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:249:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5231 phiX174 5230 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=267;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:267:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5232 phiX174 5231 . G . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=283;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:283:.:.:0
5af352c58c24 Uploaded dave parents: diff changeset	5233 phiX174 5232 . T . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=245;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:245:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	5235 phiX174 5234 . C . 5.61269e-16 . DP=4;DPB=4;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=284;RO=4;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4:4:284:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	5310 phiX174 5322 . G A 0.948335 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=1.98861;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29;QR=71;RO=1;RPL=0;RPP=5.18177;RPPR=5.18177;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=0;SRP=5.18177;SRR=1;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:71:1:29:-2.23412,0,-3.09777
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5af352c58c24 Uploaded dave parents: diff changeset	5362 phiX174 5374 . T C 0.362885 . AB=0.333333;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=1;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=5.18177;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=37;NS=1;NUMALT=1;ODDS=2.48133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33;QR=104;RO=2;RPL=1;RPP=5.18177;RPPR=7.35324;RPR=0;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=0;SRP=7.35324;SRR=2;TYPE=snp GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:2,1:2:104:1:33:-2.25143,0,-5.60854
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5af352c58c24 Uploaded dave parents: diff changeset	5364 phiX174 5376 . T . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	5366 phiX174 5378 . C . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	5370 phiX174 5382 . C . 1.45238e-15 . DP=2;DPB=2;EPPR=7.35324;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=142;RO=2;RPPR=7.35324 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2:2:142:.:.:0
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5af352c58c24 Uploaded dave parents: diff changeset	5372 phiX174 5384 . G . 0 . DP=1;DPB=1;EPPR=5.18177;GTI=0;MQMR=37;NS=1;NUMALT=0;ODDS=0;PAIREDR=0;PQR=0;PRO=0;QR=71;RO=1;RPPR=5.18177 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1:1:71:.:.:0

Mercurial > repos > dave > freebayes

annotate test-data/freebayes-phix174-test3.vcf @ 0:5af352c58c24 draft default tip