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<tool id="MRF" name="MRF" version="0.2.0">
  <description>MRF</description>
  <command interpreter="python"> mrf.py -f $configfile -o "$cluster" "$resulttxt" "$morphology" "$histogram"
  </command>
  <requirements>
    <requirement type="binary">MRF</requirement>
  </requirements> 
 <inputs>
    <param name="posfile" type="data" label="First POS filename" help="Select the POS file your have uploaded" format="pos" />
    <param name="range" type="data" label="Range" help="Select the range file you have uploaded" format="rng" />
	<param name="neighbours" size="2" type="integer" value="2" label="Nearest neighbours" help="How many nearest neighbours (kNN >= 1)?" />
	<param name="rmaxnm" size="20" type="text" value="1.0" label="Maximum radius" help="What maximum radius (r_max nm) should the kNN be within (r_max > 0.0)?" />
	<param name="solute" size="20" type="text" value="2 1 0" label="Solute elements" help="List of the solute elements, seperate by a space and ending with 0" />
	<param name="morpho_min" size="2" type="text" value="2" label="Morphology Cluster size min" help="Minimum cluster size for the morphology file (min 2)" />
	<param name="morpho_max" size="2" type="text" value="999999" label="Morphology Cluster size max" help="Maximum cluster size for the morphology file (max 999999)" />
	<param name="cluster_min" size="6" type="text" value="2" label="Cluster size min" help="Minimum cluster size for the cluster file" />
	<param name="cluster_max" size="6" type="text" value="999999" label="Cluster size max" help="Maximum cluster size for the cluster file (max 999999)" />
  </inputs>
  <outputs>
    <data name="cluster" format="pos" />
    <data name="resulttxt" format="txt" />
    <data name="morphology" format="txt" />
    <data name="histogram" format="txt" />
  </outputs>
  <configfiles>
  <configfile name="configfile">
 $posfile $range $neighbours $rmaxnm $solute 1 1 $morpho_min $morpho_max 1 $cluster_min $cluster_max 
 </configfile>
  </configfiles>
  <help>
  </help>
</tool>