19
|
1 import tarfile
|
|
2 import data
|
|
3 import galaxy.util
|
15
|
4 from galaxy.datatypes.metadata import MetadataElement
|
|
5 from galaxy.datatypes.binary import Binary
|
|
6 from galaxy.datatypes import metadata
|
|
7 from galaxy.datatypes.sniff import *
|
19
|
8
|
15
|
9
|
|
10 class Tar( Binary ):
|
16
|
11 """Class describing a BAM binary file"""
|
|
12 file_ext = "tar"
|
|
13 def sniff( self, filename ):
|
|
14 try:
|
|
15 if tarfile.is_tarfile(filename):
|
15
|
16 return True
|
16
|
17 except:
|
|
18 return False
|
15
|
19
|
|
20 def set_peek( self, dataset, is_multi_byte=False ):
|
|
21 if not dataset.dataset.purged:
|
17
|
22 dataset.peek = "Tar file"
|
|
23 dataset.blurb = data.nice_size( dataset.get_size() )
|
15
|
24 else:
|
17
|
25 dataset.peek = 'file does not exist'
|
|
26 dataset.blurb = 'file purged from disk'
|
15
|
27
|
|
28 def display_peek( self, dataset ):
|
|
29 try:
|
|
30 return dataset.peek
|
|
31 except:
|
|
32 return "Tar file" |