annotate tar.py @ 18:926bb99cd83c draft

Change versions
author da-intersect
date Thu, 11 Apr 2013 10:19:11 +1000
parents 956779875d03
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
15
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
1 from galaxy import eggs
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
2 import pkg_resources
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
3 pkg_resources.require( "bx-python" )
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
4 from galaxy import util
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
5 from galaxy.datatypes.sniff import *
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
6 from galaxy.datatypes.binary import Binary
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
7 import tarfile
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
8
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
9 class Tar( Binary ):
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
10 """Class describing a BAM binary file"""
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
11 file_ext = "tar"
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
12 def sniff( self, filename ):
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
13 try:
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
14 if tarfile.is_tarfile(filename):
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
15 return True
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
16 return False
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
17 except:
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
18 return False
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
19 def set_peek( self, dataset, is_multi_byte=False ):
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
20 if not dataset.dataset.purged:
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
21 dataset.peek = "Tar file"
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
22 dataset.blurb = data.nice_size( dataset.get_size() )
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
23 else:
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
24 dataset.peek = 'file does not exist'
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
25 dataset.blurb = 'file purged from disk'
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
26 def display_peek( self, dataset ):
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
27 try:
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
28 return dataset.peek
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
29 except:
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
30 return "Tar file (%s)" % ( data.nice_size( dataset.get_size() ) )
679608cfd350 Uploaded
da-intersect
parents:
diff changeset
31