diff tar.py @ 15:679608cfd350 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tar.py	Wed Apr 10 03:08:10 2013 -0400
@@ -0,0 +1,34 @@
+from galaxy import eggs
+import pkg_resources
+pkg_resources.require( "bx-python" )
+
+import logging, os, sys, time, sets, tempfile, shutil
+import data
+from galaxy import util
+from galaxy.datatypes.sniff import *
+from galaxy.datatypes.binary import Binary
+import tarfile
+
+class Tar( Binary ):
+    """Class describing a BAM binary file"""
+    file_ext = "tar"
+    def sniff( self, filename ):
+        try:
+            if tarfile.is_tarfile(filename):
+                return True
+            return False
+        except:
+            return False
+    def set_peek( self, dataset, is_multi_byte=False ):
+        if not dataset.dataset.purged:
+            dataset.peek  = "Tar file"
+            dataset.blurb = data.nice_size( dataset.get_size() )
+        else:
+            dataset.peek = 'file does not exist'
+            dataset.blurb = 'file purged from disk'
+    def display_peek( self, dataset ):
+        try:
+            return dataset.peek
+        except:
+            return "Tar file (%s)" % ( data.nice_size( dataset.get_size() ) )
+