Mercurial > repos > czouaoui > abundance_table_to_biom1

changeset 6:80877c2fc880 draft default tip

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author czouaoui
date Tue, 20 Mar 2018 05:12:29 -0400
parents d2f523789a27
children
files abundanceTable_to_biom/test-data/abundanceTable_to_biom.xml
diffstat 1 files changed, 0 insertions(+), 22 deletions(-) [+]
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--- a/abundanceTable_to_biom/test-data/abundanceTable_to_biom.xml	Tue Mar 20 05:12:21 2018 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,22 +0,0 @@
-<tool id="abundanceTable_to_biom" name="Converting abundance tables to Biom files (v1.0)" version="0.1.0">
-    <command detect_errors="exit_code"><![CDATA[
-        python $__tool_directory__/abundanceTable_to_biom.py --file $input --out_name biom_result
-    ]]></command>
-    <inputs>
-        <param type="data" name="input" format="csv" label="Abundance table"/>
-    </inputs>
-    <outputs>
-        <data name= "output" format="biom1" label="${input.name} to Biom (v1.0)" from_work_dir="biom_result.biom"/>
-    </outputs>
-    <tests>
-        <test>
-            <param name="input" format="csv" value="merge_summary_reads.csv"/>
-            <output name="output" format="biom1" file="biom_result.biom"/>
-        </test>
-    </tests>
-    <help><![CDATA[
-        This tool is used to generate a Biom file (v1.0) from an abundance table. 
-	The first column of the header is a taxonomy list (families). Next columns contain sample ids.
-	The abundancy of reads is set inside the table. 
-    ]]></help>
-</tool>