Mercurial > repos > czouaoui > abundance_table_to_biom1
changeset 6:80877c2fc880 draft default tip
Deleted selected files
author | czouaoui |
---|---|
date | Tue, 20 Mar 2018 05:12:29 -0400 |
parents | d2f523789a27 |
children | |
files | abundanceTable_to_biom/test-data/abundanceTable_to_biom.xml |
diffstat | 1 files changed, 0 insertions(+), 22 deletions(-) [+] |
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--- a/abundanceTable_to_biom/test-data/abundanceTable_to_biom.xml Tue Mar 20 05:12:21 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,22 +0,0 @@ -<tool id="abundanceTable_to_biom" name="Converting abundance tables to Biom files (v1.0)" version="0.1.0"> - <command detect_errors="exit_code"><![CDATA[ - python $__tool_directory__/abundanceTable_to_biom.py --file $input --out_name biom_result - ]]></command> - <inputs> - <param type="data" name="input" format="csv" label="Abundance table"/> - </inputs> - <outputs> - <data name= "output" format="biom1" label="${input.name} to Biom (v1.0)" from_work_dir="biom_result.biom"/> - </outputs> - <tests> - <test> - <param name="input" format="csv" value="merge_summary_reads.csv"/> - <output name="output" format="biom1" file="biom_result.biom"/> - </test> - </tests> - <help><![CDATA[ - This tool is used to generate a Biom file (v1.0) from an abundance table. - The first column of the header is a taxonomy list (families). Next columns contain sample ids. - The abundancy of reads is set inside the table. - ]]></help> -</tool>