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# This is a sample file distributed with Galaxy that enables tools
# to use gene/exon annotations in the GFF/GTF format. You will need
# to add all the gene set annotations in this configuration file.
# Because of this file, galaxy tools are able to access gene annotations
# provided as GFF / GTF files by selecting on:
# - Priorty (defined by the order in the file)
# - Provider
# - dbkey (reference genome id)
#
# The gene_sets.loc file syntax is:
# <name/UID> <dbkey> <path> <provider> <URL/reference*>
#  *optional
#
# Please ensure maximally one TAB (\t) between two columns!
# ---------------------------------------------------------
#
# In case you have TWO or MORE providers PER dbkey, the one mentioned
# first in the file, should have the "default" priority.
#



# [UCSC - UCSC Genes: knownGene]

#hg19.UCSC knownGene (mm/'yy)   hg19    /depot/data2/galaxy/hg19/gene_sets/Homo_sapiens.GRCh37.74.gtf   ucsc    http://genome.ucsc.edu/
#hg18.UCSC knownGene (mm/'yy)   hg18    /depot/data2/galaxy/hg18/gene_sets/Homo_sapiens.NCBI36.54.gtf   ucsc    http://genome.ucsc.edu/



# [RefSeq Genes: RefGene]
# link: ftp://ftp.ncbi.nlm.nih.gov/refseq/H_sapiens/RefSeqGene/



# [ Ensembl]
# link: http://www.ensembl.org/info/data/ftp/index.html

#Homo_sapiens.GRCh37.74 hg19    /depot/data2/galaxy/hg19/gene_sets/Homo_sapiens.GRCh37.74.gtf   ensembl ftp://ftp.ensembl.org/pub/release-74/gtf/homo_sapiens/Homo_sapiens.GRCh37.74.gtf.gz
#Homo_sapiens.NCBI36.54 hg18    /depot/data2/galaxy/hg18/gene_sets/Homo_sapiens.NCBI36.54.gtf   ensembl ftp://ftp.ensembl.org/pub/release-54/gtf/homo_sapiens/Homo_sapiens.NCBI36.54.gtf.gz