Mercurial > repos > crusoe > khmer
changeset 16:6b98c8191f85
typo be gone
| author | Michael R. Crusoe <mcrusoe@msu.edu> |
|---|---|
| date | Sun, 29 Jun 2014 11:51:19 -0400 |
| parents | 3190813916c0 |
| children | d0ed83fde239 |
| files | abundance-dist-single.xml macros.xml |
| diffstat | 2 files changed, 20 insertions(+), 4 deletions(-) [+] |
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--- a/abundance-dist-single.xml Sun Jun 29 11:28:46 2014 -0400 +++ b/abundance-dist-single.xml Sun Jun 29 11:51:19 2014 -0400 @@ -61,9 +61,9 @@ <test> <param name="input_sequence_filename" value="test-abund-read-2.fa" /> <param name="type" value="specific" /> - <param name="tablesize_specific" value="1e7" /> - <param name="n_tables" value="2" /> - <param name="ksize" value="17" /> + <param name="parameters.tablesize_specific" value="1e7" /> + <param name="parameters.n_tables" value="2" /> + <param name="parameters.ksize" value="17" /> <param name="no_zero" value="false" /> <output name="output_histogram_filename"> <assert_contents> @@ -72,6 +72,22 @@ </assert_contents> </output> </test> + <test> + <param name="input_sequence_filename" value="test-abund-read-2.fa" /> + <param name="type" value="specific" /> + <param name="parameters.tablesize_specific" value="1e7" /> + <param name="parameters.n_tables" value="2" /> + <param name="parameters.ksize" value="17" /> + <param name="no_zero" value="false" /> + <param name="no_bigcount" value="false" /> + <output name="output_histogram_filename"> + <assert_contents> + <has_text text="1 96 96 0.98" /> + <has_text text="1001 2 98 1.0" /> + </assert_contents> + </output> + </test> + </tests> <!-- [OPTIONAL] Help displayed in Galaxy -->
--- a/macros.xml Sun Jun 29 11:28:46 2014 -0400 +++ b/macros.xml Sun Jun 29 11:51:19 2014 -0400 @@ -61,7 +61,7 @@ value="4" label="n_tables" help="number of tables to use" /> - <param name="tablesize_specifc" + <param name="tablesize_specific" type="text" label="tablesize" help="lower bound on the tablesize to use" />