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view ukseed.xml @ 1:a8f30e5859c9 draft

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author cropgeeks
date Tue, 17 Apr 2018 08:09:21 -0400
parents 0da02ef4141a
children 4e2b3a96fee1
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<tool id="ukseed_dartseq" name="UK SeeD Dartseq Analysis" version="0.0.1">
    <description>run a dartseq analysis</description>
<!--    <requirements>
        <requirement type="package" version="0.14.1">pandas</requirement>
    </requirements>
-->
    <command>
	    Rscript --vanilla $__tool_directory__/dartseq_seeduk_1.R $input
		
		plink --bfile test --recode A 
		
		Rscript --vanilla $__tool_directory__/dartseq_seeduk_2.R $output
    </command>
    <inputs>
        <param format="csv" name="input" type="data" label="Input file"
            help="Input file of genotype data"/>
    </inputs>

    <outputs>
        <data name="output" format="csv" />
    </outputs>
  
    <stdio>
        <exit_code range="1:" />
    </stdio>

    <help></help>

    <citations>
    </citations>
</tool>