Mercurial > repos > cropgeeks > ukseed

diff ukseed.xml @ 1:a8f30e5859c9 draft

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author cropgeeks
date Tue, 17 Apr 2018 08:09:21 -0400
parents 0da02ef4141a
children 4e2b3a96fee1
line wrap: on
line diff
--- a/ukseed.xml	Mon Apr 16 09:02:18 2018 -0400
+++ b/ukseed.xml	Tue Apr 17 08:09:21 2018 -0400
@@ -5,7 +5,11 @@
     </requirements>
 -->
     <command>
-	    /mnt/shared/scratch/synology/im40824/apps/conda/bin/Rscript --vanilla $__tool_directory__/dartseq_seeduk.R $input
+	    Rscript --vanilla $__tool_directory__/dartseq_seeduk_1.R $input
+		
+		plink --bfile test --recode A 
+		
+		Rscript --vanilla $__tool_directory__/dartseq_seeduk_2.R $output
     </command>
     <inputs>
         <param format="csv" name="input" type="data" label="Input file"