Mercurial > repos > cropgeeks > flapjack

diff mabcstats.xml @ 56:8a06f49972d0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Added more optional parameters to mabcstats.xml and pedverf1stats.xml
author cropgeeks
date Wed, 15 Nov 2017 06:42:44 -0500
parents 6777844fd638
children ca8171e44b7e
line wrap: on
line diff
--- a/mabcstats.xml	Tue Nov 14 11:28:35 2017 -0500
+++ b/mabcstats.xml	Wed Nov 15 06:42:44 2017 -0500
@@ -9,6 +9,9 @@
 		-m $map
 		-g $genotypes
 		-q $qtls
+		#if $traits
+			-t $traits
+		#end if
 		-r $parent1
 		-d $parent2
 		-model $model
@@ -40,6 +43,11 @@
 			label="Flapjack QTL file"
 			help="Flapjack-formatted (tab-delimited text) input file of QTL data."/>
 
+		<param format="fjphenotype" name="traits" type="data"
+			   label="Flapjack Trait file"
+			   help="Flapjack-formatted (tab-delimited text) input file of trait data."
+			   optional="true"/>
+
 		<param name="parent1" type="integer" value="1"
 			label="Index of recurrent parent"
 			help="The index of the recurrent parent in the genotype file."/>