Mercurial > repos > cropgeeks > flapjack
comparison mabcstats.xml @ 56:8a06f49972d0 draft
Added more optional parameters to mabcstats.xml and pedverf1stats.xml
| author | cropgeeks |
|---|---|
| date | Wed, 15 Nov 2017 06:42:44 -0500 |
| parents | 6777844fd638 |
| children | ca8171e44b7e |
comparison
equal
deleted
inserted
replaced
| 55:6777844fd638 | 56:8a06f49972d0 |
|---|---|
| 7 #end if | 7 #end if |
| 8 -cp $__tool_directory__/lib/flapjack.jar jhi.flapjack.io.cmd.GenerateMabcStats | 8 -cp $__tool_directory__/lib/flapjack.jar jhi.flapjack.io.cmd.GenerateMabcStats |
| 9 -m $map | 9 -m $map |
| 10 -g $genotypes | 10 -g $genotypes |
| 11 -q $qtls | 11 -q $qtls |
| 12 #if $traits | |
| 13 -t $traits | |
| 14 #end if | |
| 12 -r $parent1 | 15 -r $parent1 |
| 13 -d $parent2 | 16 -d $parent2 |
| 14 -model $model | 17 -model $model |
| 15 -c $coverage | 18 -c $coverage |
| 16 -o $output | 19 -o $output |
| 37 help="Flapjack-formatted (tab-delimited text) input file of genotype data."/> | 40 help="Flapjack-formatted (tab-delimited text) input file of genotype data."/> |
| 38 | 41 |
| 39 <param format="fjqtl" name="qtls" type="data" | 42 <param format="fjqtl" name="qtls" type="data" |
| 40 label="Flapjack QTL file" | 43 label="Flapjack QTL file" |
| 41 help="Flapjack-formatted (tab-delimited text) input file of QTL data."/> | 44 help="Flapjack-formatted (tab-delimited text) input file of QTL data."/> |
| 45 | |
| 46 <param format="fjphenotype" name="traits" type="data" | |
| 47 label="Flapjack Trait file" | |
| 48 help="Flapjack-formatted (tab-delimited text) input file of trait data." | |
| 49 optional="true"/> | |
| 42 | 50 |
| 43 <param name="parent1" type="integer" value="1" | 51 <param name="parent1" type="integer" value="1" |
| 44 label="Index of recurrent parent" | 52 label="Index of recurrent parent" |
| 45 help="The index of the recurrent parent in the genotype file."/> | 53 help="The index of the recurrent parent in the genotype file."/> |
| 46 | 54 |