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view tRNAscan_to_gff_SE_format.xml @ 0:d5c3354c166d draft default tip

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author cpt_testbed
date Fri, 29 Apr 2022 10:33:36 +0000
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<?xml version="1.0"?>
<tool id="tRNA-SE_scan_to_gff" name="Convert tRNAscan-SE table to gff format" version="20.0.0">
	<description></description>
	<macros>
		<import>macros.xml</import>
		<import>cpt-macros.xml</import>
	</macros>
	<expand macro="requirements"/>
	<command detect_errors="aggressive"><![CDATA[
python $__tool_directory__/tRNAscan_to_gff_SE_format.py
< $trnascan
> $output
]]></command>
	<inputs>
			<param format="tabular" type="data" name="trnascan" label="tRNAscan table" />
	</inputs>
	<outputs>
		<data format="gff3" name="output">
		</data>
	</outputs>
	<tests>
		<test>
			<param name="trnascan" value="ConvTrnaSe_In.tabular" />
			<output name="output" file="ConvTrnaSe_Out.gff3" />
		</test>
	</tests>
	<help><![CDATA[
What it does
============

Converts tRNAscan-SE table to gff format

]]></help>
		<expand macro="citations" />
</tool>