view gff3_reformat.xml @ 0:f678e282b320 draft default tip

"planemo upload"

<?xml version="1.0"?>
<tool id="edu.tamu.cpt.gff3.reformat" name="Reformat GFF3 File" version="19.1.0.0">
  <description>by passing it through biopython</description>
  <macros>
    <import>macros.xml</import>
		<import>cpt-macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[
$__tool_directory__/gff3_reformat.py
@INPUT_GFF@
> $default]]></command>
  <inputs>
    <expand macro="gff3_input" />
  </inputs>
  <outputs>
    <data format="gff3" hidden="false" name="default"/>
  </outputs>
  <tests>
                <test>
			<param name="gff3_data" value="T7_ReformatIn.gff3" />
			<output name="output" file="T7_ReformatOut.gff3" />
		</test>
		<test>
			<param name="gff3_data" value="Miro_ReformatIn.gff3" />
			<output name="output" file="Miro_ReformatOut.gff3" />
		</test>
	</tests>
  <help><![CDATA[
**What it does**

Uses the biopython tools to clean up poorly formatted input GFF3 or GFF2 data. 
This includes reformatting the GFF3 file header and properly displaying special 
characters.      
	
	]]></help>
		<expand macro="citations" />
</tool>