diff gff3_reformat.py @ 0:f678e282b320 draft default tip

"planemo upload"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/gff3_reformat.py	Fri May 06 07:07:23 2022 +0000
@@ -0,0 +1,20 @@
+#!/usr/bin/env python
+import sys
+import argparse
+from CPT_GFFParser import gffParse, gffWrite
+import logging
+
+logging.basicConfig(level=logging.INFO)
+
+
+def reformat(data):
+    for record in gffParse(data):
+        record.annotations = {}
+        gffWrite([record], sys.stdout)
+
+
+if __name__ == "__main__":
+    parser = argparse.ArgumentParser(description="Reformat GFF files")
+    parser.add_argument("data", type=argparse.FileType("r"), help="Input annotations")
+    args = parser.parse_args()
+    reformat(**vars(args))