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1 #!/usr/bin/env python
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2 import sys
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3 import argparse
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4 from CPT_GFFParser import gffParse, gffWrite
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5 import logging
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6
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7 logging.basicConfig(level=logging.INFO)
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8
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9
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10 def reformat(data):
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11 for record in gffParse(data):
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12 record.annotations = {}
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13 gffWrite([record], sys.stdout)
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14
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15
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16 if __name__ == "__main__":
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17 parser = argparse.ArgumentParser(description="Reformat GFF files")
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18 parser.add_argument("data", type=argparse.FileType("r"), help="Input annotations")
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19 args = parser.parse_args()
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20 reformat(**vars(args))
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