Mercurial > repos > climate > ctsm_fates

annotate ctsm-fates.xml @ 3:59977d41cd20 draft default tip

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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
author climate
date Thu, 17 Dec 2020 14:33:02 +0000
parents 4148f3776fb6
children
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3
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
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diff changeset
1 <tool id="ctsm_fates" name="CTSM/FATES-EMERALD" version="2.0.1.1">
0
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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2 <description>Functionally Assembled Terrestrial Ecosystem Simulator</description>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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3 <requirements>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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4 <requirement type="package" version="2.0.1">fates-emerald</requirement>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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5 <requirement type="package" version="1.32">tar</requirement>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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6 <requirement type="package" version="2.35">binutils</requirement>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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7 <requirement type="package" version="3">python</requirement>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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8 <requirement type="package" version="2.0132">perl-xml-libxml</requirement>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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9 </requirements>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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10 <command detect_errors="exit_code"><![CDATA[
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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11 ( export HOME=`pwd` &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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12 export USER='jovyan' &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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13 mkdir -p .cime &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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14 cp '$__tool_directory__/config' .cime/config &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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15 cp '$__tool_directory__/config_compilers.xml' '.cime/config_compilers.xml' &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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16 cp '$__tool_directory__/config_machines.xml' '.cime/config_machines.xml' &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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17 mkdir inputdata &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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18 tar -xf '$inputdata' -C 'inputdata/' &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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19 mkdir output_dir &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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20 mkdir usermods_dirs &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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21 #if str($adv.condi_user_mods).strip() == 'yes'
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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22 # should create a new type user_mods.tar
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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23 cd usermods_dirs &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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24 tar xf '$user_mods' &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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25 cd .. &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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26 #end if
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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27 create_newcase --case '$casename' --compset 2000_DATM%1PTGSWP3_CLM50%FATES_SICE_SOCN_MOSART_SGLC_SWAV --machine espresso --run-unsupported
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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28 #if str($adv.condi_user_mods).strip() == 'yes'
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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29 --user-mods-dir usermods_dirs
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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30 #end if
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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31 --res '$resolution' &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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32 cd '$casename' &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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33 ./case.setup > $case_info 2>&1 &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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34 #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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35 ./xmlchange RUN_TYPE=$adv_period.condi_type_run.run_type &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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36 ./xmlchange RUN_REFDATE=$adv_period.condi_type_run.run_refdate &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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37 ./xmlchange RUN_REFCASE=$adv_period.condi_type_run.run_refcase &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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38 #end if
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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39 #if ((str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'startup') and ($adv_period.condi_type_run.run_startdate != ''))
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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40 ./xmlchange RUN_STARTDATE=$adv_period.condi_type_run.run_startdate &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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41 #end if
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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42 ./xmlchange STOP_N=$adv_period.stopn &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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43 ./xmlchange STOP_OPTION=$adv_period.stop_option &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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44 ./xmlchange CCSM_CO2_PPMV=$adv.co2 &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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45 ./xmlchange DOUT_S=FALSE &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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46 cp '$user_nl_clm_customization' user_nl_clm &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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47 ./case.build >> $case_info 2>&1 &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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48 #if (str($adv_period.condi_type_run.run_type) == 'hybrid' or str($adv_period.condi_type_run.run_type) == 'branch')
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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49 tar -xf '$adv_period.condi_type_run.restart' -C '../work/$casename/run/' &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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50
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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51 #end if
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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52 ./case.submit >> $case_info 2>&1 &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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53 mkdir -p restart &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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54 (cat '../work/$casename/run/rpointer'.* > $rinfo || printf "No restarts\n") &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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55 (cp '../work/$casename/run/$casename'.*.r*.*.nc restart/ || printf "No netCDF restarts\n") &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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56 (cp '../work/$casename/run/$casename'.*.r*.*.bin restart/ || printf "No bin restarts\n") &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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57 (cp '../work/$casename/run/rpointer'.* restart/ || printf "no rpointer\n") &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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58 cd restart &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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59 tar cvf $restart . &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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60 cd .. &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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61 (cp '../work/$casename/run/$casename'.*.h*.*.nc ../output_dir/ || printf "no netCDF outputs\n") &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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62 (gunzip '../work/$casename/run/'*.log.* || printf "no compressed logs") &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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63 cat '../work/$casename/run/'atm.log.* >> $atm_log &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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64 cat '../work/$casename/run/'cesm.log.* >> $cesm_log &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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65 cat '../work/$casename/run/'cpl.log.* >> $cpl_log &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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66 cat '../work/$casename/run/'lnd.log.* >> $lnd_log &&
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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67 cat '../work/$casename/run/'rof.log.* >> $rof_log ) ||
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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68 (printf "Case failed" && tar cf $work \${HOME}/work)
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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69 ]]></command>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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70 <configfiles>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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71 <configfile name="user_nl_clm_customization"><![CDATA[
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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72 &clm_inparm
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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73 hist_mfilt = 120,
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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74 use_fates = .true.,
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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75 fates_spitfire_mode = $adv_clm.fates_spitfire_mode,
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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76 use_fates_planthydro = $adv_clm.use_fates_planthydro,
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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77 use_fates_cohort_age_tracking = $adv_clm.use_fates_cohort_age_tracking,
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
78 use_fates_ed_st3 = $adv_clm.use_fates_ed_st3,
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
79 use_fates_ed_prescribed_phys = $adv_clm.use_fates_ed_prescribed_phys,
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
80 use_fates_logging = $adv_clm.use_fates_logging,
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
81 use_fates_fixed_biogeog = $adv_clm.use_fates_fixed_biogeog,
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
82 #if (str($adv_clm.fates_parteh_mode).strip() != '')
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
83 fates_parteh_mode = $adv_clm.fates_parteh_mode
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
84 #end if
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
85 /
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
86 ]]>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
87 </configfile>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
88 </configfiles>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
89 <inputs>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
90 <param name="inputdata" type="data" format='tar' label="inputdata for running FATES EMERALD"></param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
91 <param name="casename" type="text" value="usecase" label="Name of your case">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
92 <validator type="regex" message="start with a letter and no blanks">^[A-Za-z][A-Za-z0-9]*</validator>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
93 </param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
94 <param name="resolution" type="select" label="Model resolution">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
95 <option value="1x1_ALP1">ALP1</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
96 <option value="1x1_ALP2">ALP2</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
97 <option value="1x1_ALP3">ALP3</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
98 <option value="1x1_ALP4">ALP4</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
99 <option value="1x1_SUB1">SUB1</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
100 <option value="1x1_SUB2">SUB2</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
101 <option value="1x1_SUB3">SUB3</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
102 <option value="1x1_SUB4">SUB4</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
103 <option value="1x1_BOR1">BOR1</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
104 <option value="1x1_BOR2">BOR2</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
105 <option value="1x1_BOR3">BOR3</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
106 <option value="1x1_BOR4">BOR4</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
107 <option value="1x1_LYG">LYG</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
108 <option value="1x1_BUO">BUO</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
109 <option value="1x1_HAV">HAV</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
110 <option value="1x1_SKO">SKO</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
111 <option value="1x1_VIKE">VIKE</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
112 <option value="1x1_LIAH">LIAH</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
113 <option value="1x1_FINN">FINN</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
114 </param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
115 <section name="adv_period" title="Customize the model run period" expanded="false">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
116
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
117 <conditional name="condi_type_run">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
118 <param name="run_type" type="select" label="Determines the model run initialization type.">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
119 <option value="startup" selected="true">startup</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
120 <option value="hybrid">hybrid</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
121 <option value="branch">branch</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
122 </param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
123 <when value="startup">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
124 <param name="run_startdate" type="text" value="" label="Run start date (yyyy-mm-dd). Only used for startup or hybrid runs.">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
125 <validator type="regex" message="YYYY-MM-DD">(^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))</validator>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
126 </param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
127 </when>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
128 <when value="branch">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
129 <param name="run_refcase" type="text" value="" label="Reference case for hybrid or branch runs"></param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
130 <param name="run_refdate" type="text" value="" label="Reference date for hybrid or branch runs (yyyy-mm-dd)">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
131 <validator type="regex" message="YYYY-MM-DD">(^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))</validator>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
132 </param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
133 <param name="restart" type="data" format='tar' label="restart for running FATES EMERALD"></param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
134 </when>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
135 <when value="hybrid">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
136 <param name="run_refcase" type="text" value="" label="Reference case for hybrid or branch runs"></param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
137 <param name="run_refdate" type="text" value="" label="Reference date for hybrid or branch runs (yyyy-mm-dd)">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
138 <validator type="regex" message="YYYY-MM-DD">(^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))</validator>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
139 </param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
140 <param name="run_startdate" type="text" value="" label="Run start date (yyyy-mm-dd). Only used for startup or hybrid runs.">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
141 <validator type="regex" message="YYYY-MM-DD">(^$|(\d{4}-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])))</validator>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
142 </param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
143 <param name="restart" type="data" format='tar' label="restart for running FATES EMERALD"></param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
144 </when>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
145 </conditional>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
146 <param name="stopn" type="integer" value="5" label="Provides a numerical count for STOP_OPTION."></param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
147 <param name="stop_option" type="select" label=" Sets the run length along with STOP_N and STOP_DATE">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
148 <option value="ndays" selected="true">ndays</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
149 <option value="none">none</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
150 <option value="never">never</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
151 <option value="nsteps">nsteps</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
152 <option value="nseconds">nseconds</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
153 <option value="nminutes">nminutes</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
154 <option value="nhours">nhours</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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155 <option value="nday">ndays</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
156 <option value="nmonths">nmonths</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
157 <option value="nyears">nyears</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
158 <option value="date">date</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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159 <option value="ifdays0">ifday0</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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160 <option value="end">end</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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161 </param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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162 </section>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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163 <section name="adv_clm" title="CLM namelist customization" expanded="false">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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164 <param name="use_fates_planthydro" type="boolean" label="Toggle to turn on plant hydraulics" truevalue=".true." falsevalue=".false." checked="false"/>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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165 <param name="use_fates_cohort_age_tracking" type="boolean" label="Toggle to turn on cohort age tracking" truevalue=".true." falsevalue=".false." checked="false"/>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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166 <param name="use_fates_ed_st3" type="boolean" label="Toggle to turn on Static Stand Structure Mode" truevalue=".true." falsevalue=".false." checked="false"/>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
167 <param name="use_fates_ed_prescribed_phys" type="boolean" label="Toggle to turn on prescribed physiology" truevalue=".true." falsevalue=".false." checked="false"/>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
168 <param name="use_fates_logging" type="boolean" label="Toggle to turn on the logging module" truevalue=".true." falsevalue=".false." checked="false"/>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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169 <param name="use_fates_fixed_biogeog" type="boolean" label="Toggle to turn on fixed biogeography mode" truevalue=".true." falsevalue=".false." checked="false"/>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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170 <param name="fates_spitfire_mode" type="select" label="Spitfire module to simulate fire">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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171 <option value="0" selected="true">None</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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172 <option value="1">Use a global constant lightning rate found in fates_params</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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173 <option value="2">Use an external lightning dataset</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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174 <option value="3">Use an external confirmed ignitions dataset</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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175 <option value="4">Use external lightning and population datasets to simulate both natural and anthropogenic ignitions</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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176 </param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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177 <param name="fates_parteh_mode" type="select" label="Switch deciding which nutrient model to use in FATES">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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178 <option value="" selected="true">None</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
179 <option value="1">1</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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180 <option value="2">2</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
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181 </param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
182 </section>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
183 <section name="adv" title="Advanced customization" expanded="false">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
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184 <param name="co2" type="float" value="367.0" label="Atmospheric CO2 molar ratio (by volume) only used when co2_type==constant (umol/mol)"></param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
185 <conditional name="condi_user_mods">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
186 <param name="add_changes" type="select" label="user-modified source code">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
187 <option value="no" selected="true">no</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
188 <option value="yes">yes</option>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
189 </param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
190 <when value="yes">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
191 <param name="usermods" type="data" format="tar" label="SourceMods"></param>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
192 </when>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
193 <when value="no"/>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
194 </conditional>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
195 </section>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
196 </inputs>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
197 <outputs>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
198 <collection name="history_files" type="list" label="${tool.name} on ${inputdata.name} (history file)">
3
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
199 <discover_datasets pattern="__name__" directory="output_dir" visible="true" format="netcdf"/>
0
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
200 </collection>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
201 <data name="atm_log" format="txt" label="${tool.name} on ${inputdata.name} (atm.log)"/>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
202 <data name="cesm_log" format="txt" label="${tool.name} on ${inputdata.name} (cesm.log)"/>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
203 <data name="cpl_log" format="txt" label="${tool.name} on ${inputdata.name} (cpl.log)"/>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
204 <data name="lnd_log" format="txt" label="${tool.name} on ${inputdata.name} (lnd.log)"/>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
205 <data name="rof_log" format="txt" label="${tool.name} on ${inputdata.name} (rof.log)"/>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
206 <data name="restart" format="tar" label="${tool.name} on ${inputdata.name} (restart)"></data>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
207 <data name="case_info" format="txt" label="${tool.name} on ${inputdata.name} (case info)"></data>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
208 <data name="rinfo" format="txt" label="${tool.name} on ${inputdata.name} (restart info)"></data>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
209 <data name="work" format="tar" label="${tool.name} on ${inputdata.name} (workdir)">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
210 </data>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
211 </outputs>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
212 <tests>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
213 <test>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
214 <param name="inputdata" value="inputdata_test.tar" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
215 <param name="casename" value="test" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
216 <param name="resolution" value="1x1_ALP1" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
217 <param name="run_startdate" value="2000-01-01" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
218 <param name="stop_option" value="nsteps" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
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parents:
diff changeset
219 <param name="stopn" value="1" />
3
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
220 <output name="atm_log" ftype="txt">
0
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
221 <assert_contents>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
222 <has_text text="(datm_comp_final) atm: end of main integration loop" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
223 </assert_contents>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
224 </output>
3
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
225 <output name="cesm_log" ftype="txt">
0
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
226 <assert_contents>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
227 <has_text text="pes participating in computation for CLM" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
228 </assert_contents>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
229 </output>
3
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
230 <output name="cpl_log" ftype="txt">
0
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
231 <assert_contents>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
232 <has_text text="SUCCESSFUL TERMINATION" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
233 </assert_contents>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
234 </output>
3
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
235 <output name="lnd_log" ftype="txt">
0
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
236 <assert_contents>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
237 <has_text text="Successfully" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
238 </assert_contents>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
239 </output>
3
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
240 <output name="rof_log" ftype="txt">
0
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
241 <assert_contents>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
242 <has_text text="MOSART model initialization" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
243 </assert_contents>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
244 </output>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
245 <output name="restart" ftype="tar" file="restart.tar" compare="sim_size" delta="100" />
3
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
246 <output name="rinfo" ftype="txt">
0
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
247 <assert_contents>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
248 <has_text text="datm.r.2000-01-01-01800.nc" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
249 <has_text text="datm.rs1.2000-01-01-01800.bin" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
250 <has_text text="cpl.r.2000-01-01-01800.nc" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
251 <has_text text="clm2.r.2000-01-01-01800.nc" />
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
252 </assert_contents>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
253 </output>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
254 <output_collection name="history_files" count="0">
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
255 </output_collection>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
256 </test>
3
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
257 <test>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
258 <param name="inputdata" value="inputdata_test.tar" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
259 <param name="casename" value="one_month" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
260 <param name="resolution" value="1x1_ALP1" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
261 <param name="stop_option" value="nmonths" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
262 <param name="stopn" value="1" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
263 <output name="atm_log" ftype="txt">
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
264 <assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
265 <has_text text="(datm_comp_final) atm: end of main integration loop" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
266 </assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
267 </output>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
268 <output name="cesm_log" ftype="txt">
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
269 <assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
270 <has_text text="pes participating in computation for CLM" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
271 </assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
272 </output>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
273 <output name="cpl_log" ftype="txt">
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
274 <assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
275 <has_text text="SUCCESSFUL TERMINATION" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
276 </assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
277 </output>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
278 <output name="lnd_log" ftype="txt">
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
279 <assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
280 <has_text text="Successfully" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
281 </assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
282 </output>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
283 <output name="rof_log" ftype="txt">
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
284 <assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
285 <has_text text="MOSART model initialization" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
286 </assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
287 </output>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
288 <output name="restart" ftype="tar">
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
289 <assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
290 <has_size value="6348800" delta="5000"/>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
291 </assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
292 </output>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
293
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
294 <output name="rinfo" ftype="txt">
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
295 <assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
296 <has_text text="datm.r.2000-02-01-00000.nc" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
297 <has_text text="datm.rs1.2000-02-01-00000.bin" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
298 <has_text text="cpl.r.2000-02-01-00000.nc" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
299 <has_text text="clm2.r.2000-02-01-00000.nc" />
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
300 </assert_contents>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
301 </output>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
302 <output_collection name="history_files" count="1">
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
303 </output_collection>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
304 </test>
59977d41cd20 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit fcaf120dd9c0ce3f453faa3e4d469aff8d35e17e"
climate
parents: 1
diff changeset
305
0
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
306 </tests>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
307 <help><![CDATA[
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
308
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
309 **The Functionally Assembled Terrestrial Ecosystem Simulator (FATES)**
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
310 ==========================================================================
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
311
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
312 This tool create and run CTSM-FATES EMERALD experiments from fates-emerald release.
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
313
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
314 This version of FATES is maintained by the University of Oslo.
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
315
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
316 Currently available resolution are as following:
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
317
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
318 SeedClim Sites:
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
319 ~~~~~~~~~~~~~~~
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
320
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
321 - ALP1,61.0243N,8.12343E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
322 - ALP2,60.8231N,7.27596E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
323 - ALP3,60.8328N,7.17561E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
324 - ALP4,60.9335N,6.41504E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
325 - SUB1,60.8203N,8.70466E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
326 - SUB2,60.8760N,7.17666E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
327 - SUB3,61.0866N,6.63028E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
328 - SUB4,60.5445N,6.51468E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
329 - BOR1,61.0355N,9.07876E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
330 - BOR2,60.8803N,7.16982E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
331 - BOR3,60.6652N,6.33738E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
332 - BOR4,60.6901N,5.96487E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
333
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
334 LandPress Sites:
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
335 ~~~~~~~~~~~~~~~~
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
336
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
337 - LYG,60.70084N,5.092566E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
338 - BUO,65.83677N,12.224506E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
339 - HAV,64.779N,11.2193E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
340 - SKO,65.79602N,12.219299E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
341
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
342 Three-D Sites:
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
343 ~~~~~~~~~~~~~~
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
344
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
345 - VIKE,60.88019N,7.16990E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
346 - JOAS,60.86183N,7.16800E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
347 - LIAH,60.85994N,7.19504E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
348
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
349
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
350 Finnmark Site:
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
351 ~~~~~~~~~~~~~~
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
352
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
353 - FINN,69.341088N,25.293524E
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
354
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
355 ]]></help>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
356 <citations>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
357
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
358 </citations>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
359 <edam_topics>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
360 <edam_topic>topic_3855</edam_topic>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
361 <edam_topic>topic_3318</edam_topic>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
362 <edam_topic>topic_3050</edam_topic>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
363 <edam_topic>topic_0610</edam_topic>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
364 </edam_topics>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
365 <edam_operations>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
366 <edam_operation>operation_3946</edam_operation>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
367 <edam_operation>operation_2426</edam_operation>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
368 </edam_operations>
9fd9fe3c61e9 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
climate
parents:
diff changeset
369 </tool>