Mercurial > repos > cjav > split_by_barcode

changeset 2:5a9ba0f9ea6f draft

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Uploaded
author cjav
date Fri, 06 Sep 2013 13:17:50 -0400
parents 25b250eeccda
children 5cb5f350b053
files ngs-tools_split_by_barcode.xml
diffstat 1 files changed, 17 insertions(+), 18 deletions(-) [+]
line wrap: on
line diff
--- a/ngs-tools_split_by_barcode.xml	Fri Sep 06 13:06:50 2013 -0400
+++ b/ngs-tools_split_by_barcode.xml	Fri Sep 06 13:17:50 2013 -0400
@@ -1,6 +1,5 @@
 <tool id="ngs-tools_split_by_barcode" name="Barcode Splitter (ngs-tools)" force_history_refresh="True">
 	<description></description>
-	<requirements><requirement type="package">ngs-tools</requirement></requirements>
     <command>
         ngs-tools split-by-barcode
             $keep_barcode $input_format.format
@@ -16,23 +15,23 @@
     </command>
 
 	<inputs>
-    <conditional name="input_format">
-        <param name="format" type="select" label="Input format">
-            <option value="--fastq" selected="true">Fastq</option>
-            <option value="">Fasta</option>
-        </param>
-        <when value="--fastq">
-            <repeat name="inputs" title="Dataset" help="Datasets to split.">
-                <param name="input" type="data" label="Dataset to split" format="fastq,fastqsanger,fastqsolexa,fastqillumina" />
-            </repeat>
-        </when>
-        <when value="">
-            <repeat name="inputs" title="Dataset" help="Datasets to split.">
-                <param name="input" type="data" label="Dataset to split" format="fasta" />
-            </repeat>
-        </when>
-    </conditional>
-     <param format="tabular" name="barcode_index" type="data" label="Barcodes index" help="See below for description." />
+        <conditional name="input_format">
+            <param name="format" type="select" label="Input format">
+                <option value="--fastq" selected="true">Fastq</option>
+                <option value="">Fasta</option>
+            </param>
+            <when value="--fastq">
+                <repeat name="inputs" title="Dataset" help="Datasets to split.">
+                    <param name="input" type="data" label="Dataset to split" format="fastq,fastqsanger,fastqsolexa,fastqillumina" />
+                </repeat>
+            </when>
+            <when value="">
+                <repeat name="inputs" title="Dataset" help="Datasets to split.">
+                    <param name="input" type="data" label="Dataset to split" format="fasta" />
+                </repeat>
+            </when>
+        </conditional>
+        <param format="tabular" name="barcode_index" type="data" label="Barcodes index" help="See below for description." />
         <param name="barcode_length" type="integer" size="3" value="11" label="Barcode length" help="Please specify the barcode length." />
         <repeat name="barcodes" title="Barcode" help="Barcodes to use. By default all barcodes with the correct length in the index are used. By using this option you can limit which ones to use.">
             <param name="barcode" type="text" label="Barcode to use" />