Mercurial > repos > cjav > merge_fna_qual
changeset 0:d27ead5d8eb0 draft
Uploaded
| author | cjav |
|---|---|
| date | Fri, 06 Sep 2013 14:10:05 -0400 |
| parents | |
| children | 4bc6eb8e58ba |
| files | ngs-tools_merge_fna_qual.xml tool_dependencies.xml |
| diffstat | 2 files changed, 37 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ngs-tools_merge_fna_qual.xml Fri Sep 06 14:10:05 2013 -0400 @@ -0,0 +1,31 @@ +<tool id="ngs-tools_merge_fna_qual" name="454's FNA/QUAL Merger (ngs-tools)" force_history_refresh="True" version="1.0.0"> + <description></description> + <requirements> + <requirement type="package" version="0.1.4">ngs-tools</requirement> + </requirements> + <command> + ngs-tools merge-fna-qual --output $output_file $fasta_file $qual_file + </command> + <inputs> + <param name="fasta_file" type="data" format="fasta" label="FASTA File" /> + <param name="qual_file" type="data" format="qual454" label="Quality Score File" /> + </inputs> + <outputs> + <data name="output_file" format="fastqsanger" /> + </outputs> +<help> + +**What it does** + +This tool joins a FASTA file to a Quality Score file, creating a single FASTQ block for each read. + +Use this tool to convert 454-type output to FASTQ. + +-------- + +This tool is based on `ngs-tools`__ by Carlos Borroto <carlos.borroto@gmail.com>. + + .. __: https://github.com/cjav/ngs-tools/ + +</help> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Sep 06 14:10:05 2013 -0400 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="ngs-tools" version="0.1.4"> + <repository changeset_revision="f95c90140890" name="package_ngs_tools_0_1_4" owner="cjav" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>