Mercurial > repos > chrisw > monorail_test
comparison monorail.xml @ 6:4104eb494bf8 draft
Uploaded
| author | chrisw |
|---|---|
| date | Tue, 12 Feb 2019 13:58:37 -0500 |
| parents | d2d9937d1f9c |
| children | 03be34974b83 |
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| 5:d2d9937d1f9c | 6:4104eb494bf8 |
|---|---|
| 101 </inputs> | 101 </inputs> |
| 102 | 102 |
| 103 | 103 |
| 104 <!-- <expand macro="dbKeyActions" /> --> | 104 <!-- <expand macro="dbKeyActions" /> --> |
| 105 <outputs> | 105 <outputs> |
| 106 <data format="txt" name="output_log" label="${tool.name} on ${on_string}: log" from_work_dir="Log.final.out"> | 106 <data format="txt" name="output_log" label="${tool.name} on ${on_string}: log" from_work_dir="Log.final.out"/> |
| 107 </data> | 107 <data format="txt" name="auc" label="${tool.name} on ${on_string}: AUC" from_work_dir="bc.auc.tsv"> |
| 108 <data format="interval" name="chimeric_junctions" label="${tool.name} on ${on_string}: chimeric junctions" from_work_dir="Chimeric.out.junction"> | 108 <data format="txt" name="bc_log" label="${tool.name} on ${on_string}: bamcount log" from_work_dir="bc.log"> |
| 109 </data> | 109 <!-- |
| 110 | 110 <data format="interval" name="chimeric_junctions" label="${tool.name} on ${on_string}: chimeric junctions" from_work_dir="Chimeric.out.junction"/> |
| 111 <data format="interval" name="splice_junctions" label="${tool.name} on ${on_string}: splice junctions.bed" from_work_dir="SJ.out.tab"> | 111 <data format="interval" name="splice_junctions" label="${tool.name} on ${on_string}: splice junctions.bed" from_work_dir="SJ.out.tab"/> |
| 112 </data> | 112 <data name="mapped_reads" format="bam" label="${tool.name} on ${on_string}: mapped.bam" from_work_dir="sorted.bam"/> |
| 113 <data name="mapped_reads" format="bam" label="${tool.name} on ${on_string}: mapped.bam" from_work_dir="sorted.bam"> | 113 <data name="mapped_reads_index" format="bai" label="${tool.name} on ${on_string}: mapped.bam.bai" from_work_dir="sorted.bam.bai"/> |
| 114 </data> | 114 --> |
| 115 <data name="mapped_reads_index" format="bai" label="${tool.name} on ${on_string}: mapped.bam.bai" from_work_dir="sorted.bam.bai"> | |
| 116 </data> | |
| 117 </outputs> | 115 </outputs> |
| 118 <help> | 116 <help> |
| 119 Run the Monorail RNA-seq analysis pipeline | 117 Run the Monorail RNA-seq analysis pipeline |
| 120 </help> | 118 </help> |
| 121 </tool> | 119 </tool> |