Mercurial > repos > chrisw > data_manager_monorail_index_fetcher
changeset 11:11daa95fdc3e draft
Uploaded
| author | chrisw |
|---|---|
| date | Wed, 13 Nov 2019 21:12:37 +0000 |
| parents | 7d7328ce424b |
| children | b456cb342e9e |
| files | data_manager_monorail_index/data_manager/data_manager.py |
| diffstat | 1 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager_monorail_index/data_manager/data_manager.py Wed Nov 13 21:02:28 2019 +0000 +++ b/data_manager_monorail_index/data_manager/data_manager.py Wed Nov 13 21:12:37 2019 +0000 @@ -20,14 +20,15 @@ workdir = os.path.join(os.getcwd(), 'monorail_index') data_manager_entry = {} ref = args.url.split('/')[-1] - data_manager_entry['dbkey'] = 'mrail.'+ref - data_manager_entry['value'] = ref.lower() + #data_manager_entry['dbkey'] = 'mrail.'+ref + data_manager_entry['dbkey'] = ref.lower() + data_manager_entry['value'] = 'v'+ref.lower() jsonin = open(args.output).read() params = json.loads(jsonin) target_directory = params['output_data'][0]['extra_files_path'] #data_manager_entry['path'] = params['output_data'][0]['extra_files_path'] data_manager_entry['path'] = target_directory - data_manager_entry['name'] = ref + data_manager_entry['name'] = 'mrail.'+ref #data_manager_entry['exons_path'] = data_manager_entry['path'] + os.sep + 'gtf' + os.sep + 'exons.bed' data_manager_json = dict(data_tables={'monorail_index': [data_manager_entry]}) file(args.output, 'wb').write(json.dumps(data_manager_json))