Mercurial > repos > chrisd > workflow_test

annotate Workflow-AmrPlusPlus_PE.ga @ 0:1f4509af191a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
author chrisd
date Mon, 14 Mar 2016 18:15:23 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
1 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
2 "a_galaxy_workflow": "true",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
3 "annotation": "",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
4 "format-version": "0.1",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
5 "name": "AmrPlusPlus_PE",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
6 "steps": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
7 "0": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
8 "annotation": "The genome to align non-host reads to",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
9 "content_id": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
10 "id": 0,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
11 "input_connections": {},
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
12 "inputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
13 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
14 "description": "The genome to align non-host reads to",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
15 "name": "AMR Database"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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16 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
17 ],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
18 "label": "AMR Database",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
19 "name": "Input dataset",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
20 "outputs": [],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
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21 "position": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
22 "left": 199.99998474121094,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
23 "top": 199.99998092651367
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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24 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
25 "tool_errors": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
26 "tool_id": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
27 "tool_state": "{\"name\": \"AMR Database\"}",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
28 "tool_version": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
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29 "type": "data_input",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
30 "uuid": "7d2f1389-60a2-4e2f-b879-3d089d399123",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
31 "workflow_outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
32 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
33 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
34 "output_name": "output",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
35 "uuid": "995b7bc5-5f82-4450-b7e3-8e44b3d9eaa8"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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36 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
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37 ]
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
38 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
39 "1": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
40 "annotation": "Genome used to filter reads on",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
41 "content_id": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
42 "id": 1,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
43 "input_connections": {},
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
44 "inputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
45 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
46 "description": "Genome used to filter reads on",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
47 "name": "Host Genome"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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48 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
49 ],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
50 "label": "Host Genome",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
51 "name": "Input dataset",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
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52 "outputs": [],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
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53 "position": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
54 "left": 199.99998474121094,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
55 "top": 283.1818046569824
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
56 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
57 "tool_errors": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
58 "tool_id": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
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59 "tool_state": "{\"name\": \"Host Genome\"}",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
60 "tool_version": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
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61 "type": "data_input",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
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62 "uuid": "828b361f-e9b5-4175-9261-5bc33d38914d",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
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63 "workflow_outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
64 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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65 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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66 "output_name": "output",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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67 "uuid": "5dc19bbb-b456-4a0d-b4c0-6c0bdfc8b967"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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68 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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69 ]
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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70 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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71 "2": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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72 "annotation": "Forward reads",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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73 "content_id": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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74 "id": 2,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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75 "input_connections": {},
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
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76 "inputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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77 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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78 "description": "Forward reads",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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79 "name": "FastQ Forward"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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80 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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81 ],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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82 "label": "FastQ Forward",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
83 "name": "Input dataset",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
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84 "outputs": [],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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85 "position": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
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86 "left": 199.99998474121094,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
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87 "top": 366.3636283874512
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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88 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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89 "tool_errors": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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90 "tool_id": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
91 "tool_state": "{\"name\": \"FastQ Forward\"}",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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92 "tool_version": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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93 "type": "data_input",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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94 "uuid": "c42b1fdc-e54c-422f-8c82-12d494a429ac",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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95 "workflow_outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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96 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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97 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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98 "output_name": "output",
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99 "uuid": "f82d5e1c-12e6-4685-a368-496923b41016"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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100 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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101 ]
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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102 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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103 "3": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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104 "annotation": "Reverse reads",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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105 "content_id": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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106 "id": 3,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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107 "input_connections": {},
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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108 "inputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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109 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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110 "description": "Reverse reads",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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111 "name": "FastQ Reverse"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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112 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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113 ],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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114 "label": "FastQ Reverse",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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115 "name": "Input dataset",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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116 "outputs": [],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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117 "position": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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118 "left": 199.99998474121094,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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119 "top": 449.5454521179199
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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120 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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121 "tool_errors": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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122 "tool_id": null,
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123 "tool_state": "{\"name\": \"FastQ Reverse\"}",
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124 "tool_version": null,
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125 "type": "data_input",
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126 "uuid": "39a7b4e2-134a-4f45-ae88-82c43b30d7c9",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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127 "workflow_outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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128 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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129 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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130 "output_name": "output",
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131 "uuid": "113db9c4-3cf2-4fc0-99eb-ab5d971fd35f"
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132 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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133 ]
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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134 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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135 "4": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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136 "annotation": "",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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137 "content_id": "testtoolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.32.3",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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138 "id": 4,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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139 "input_connections": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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140 "paired_end|paired_input_type_conditional|fastq_r1_in": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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141 "id": 2,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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142 "output_name": "output"
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143 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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144 "paired_end|paired_input_type_conditional|fastq_r2_in": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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145 "id": 3,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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146 "output_name": "output"
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147 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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148 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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149 "inputs": [],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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150 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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151 "name": "Trimmomatic",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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152 "outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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153 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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154 "name": "fastq_out_paired",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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155 "type": "input"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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156 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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157 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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158 "name": "fastq_out_unpaired",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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159 "type": "input"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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160 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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161 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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162 "name": "fastq_out_r1_paired",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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163 "type": "fastqsanger"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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164 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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165 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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166 "name": "fastq_out_r2_paired",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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167 "type": "fastqsanger"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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168 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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169 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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170 "name": "fastq_out_r1_unpaired",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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171 "type": "fastqsanger"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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172 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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173 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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174 "name": "fastq_out_r2_unpaired",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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175 "type": "fastqsanger"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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176 },
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177 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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178 "name": "fastq_out",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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179 "type": "fastqsanger"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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180 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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181 ],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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182 "position": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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183 "left": 428.1818389892578,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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184 "top": 199.99998092651367
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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185 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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186 "post_job_actions": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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187 "DeleteIntermediatesActionfastq_out_paired": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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188 "action_arguments": {},
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189 "action_type": "DeleteIntermediatesAction",
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190 "output_name": "fastq_out_paired"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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191 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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192 "HideDatasetActionfastq_out": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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193 "action_arguments": {},
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194 "action_type": "HideDatasetAction",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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195 "output_name": "fastq_out"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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196 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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197 "HideDatasetActionfastq_out_paired": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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198 "action_arguments": {},
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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199 "action_type": "HideDatasetAction",
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200 "output_name": "fastq_out_paired"
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201 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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202 "HideDatasetActionfastq_out_r1_unpaired": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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203 "action_arguments": {},
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204 "action_type": "HideDatasetAction",
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205 "output_name": "fastq_out_r1_unpaired"
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206 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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207 "HideDatasetActionfastq_out_r2_unpaired": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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208 "action_arguments": {},
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209 "action_type": "HideDatasetAction",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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210 "output_name": "fastq_out_r2_unpaired"
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211 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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212 "HideDatasetActionfastq_out_unpaired": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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213 "action_arguments": {},
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214 "action_type": "HideDatasetAction",
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215 "output_name": "fastq_out_unpaired"
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216 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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217 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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218 "tool_errors": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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219 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.32.3",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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220 "tool_state": "{\"operations\": \"[{\\\"__index__\\\": 0, \\\"operation\\\": {\\\"window_size\\\": \\\"4\\\", \\\"name\\\": \\\"SLIDINGWINDOW\\\", \\\"__current_case__\\\": 0, \\\"required_quality\\\": \\\"20\\\"}}]\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"paired_end\": \"{\\\"is_paired_end\\\": \\\"True\\\", \\\"paired_input_type_conditional\\\": {\\\"paired_input_type\\\": \\\"pair_of_files\\\", \\\"fastq_r1_in\\\": null, \\\"__current_case__\\\": 0, \\\"fastq_r2_in\\\": null}, \\\"__current_case__\\\": 1}\", \"illuminaclip\": \"{\\\"do_illuminaclip\\\": \\\"False\\\", \\\"__current_case__\\\": 1}\"}",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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221 "tool_version": "0.32.3",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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222 "type": "tool",
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223 "uuid": "48c74cd7-a7ca-4b2e-aed8-83ce9fda1de0",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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224 "workflow_outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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225 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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226 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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227 "output_name": "fastq_out_r1_paired",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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228 "uuid": "b646d123-7b6e-4850-a1c1-fa67e4b97b2a"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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229 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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230 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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231 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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232 "output_name": "fastq_out_r2_paired",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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233 "uuid": "b4795869-e4c5-4144-b070-0259ae2dea53"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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234 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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235 ]
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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236 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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237 "5": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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238 "annotation": "",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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239 "content_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.4.2",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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240 "id": 5,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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241 "input_connections": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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242 "input_type|fastq_input1": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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243 "id": 4,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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244 "output_name": "fastq_out_r1_paired"
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245 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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246 "input_type|fastq_input2": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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247 "id": 4,
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248 "output_name": "fastq_out_r2_paired"
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249 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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250 "reference_source|ref_file": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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251 "id": 1,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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252 "output_name": "output"
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253 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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254 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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255 "inputs": [],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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256 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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257 "name": "Map with BWA",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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258 "outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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259 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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260 "name": "bam_output",
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261 "type": "bam"
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262 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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chrisd
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diff changeset
267 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
269 "DeleteIntermediatesActionbam_output": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
270 "action_arguments": {},
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
271 "action_type": "DeleteIntermediatesAction",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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272 "output_name": "bam_output"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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273 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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274 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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276 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.4.2",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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278 "tool_version": "0.4.2",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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279 "type": "tool",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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281 "workflow_outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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282 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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284 "output_name": "bam_output",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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286 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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287 ]
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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288 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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294 "inputFile": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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296 "output_name": "bam_output"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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297 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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298 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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299 "inputs": [],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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301 "name": "FilterSamReads",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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302 "outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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303 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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304 "name": "outFile",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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305 "type": "bam"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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306 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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307 ],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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308 "position": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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309 "left": 1058.536880493164,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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311 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
312 "post_job_actions": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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313 "DeleteIntermediatesActionoutFile": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
314 "action_arguments": {},
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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315 "action_type": "DeleteIntermediatesAction",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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316 "output_name": "outFile"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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317 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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318 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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319 "tool_errors": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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320 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FilterSamReads/1.136.0",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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321 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"inputFile\": \"null\", \"filter_type\": \"{\\\"filter\\\": \\\"excludeAligned\\\", \\\"__current_case__\\\": 1}\", \"validation_stringency\": \"\\\"LENIENT\\\"\"}",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
322 "tool_version": "1.136.0",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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323 "type": "tool",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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324 "uuid": "65d5c6a4-cbe4-4649-be02-c4292807ee7a",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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325 "workflow_outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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326 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
327 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
328 "output_name": "outFile",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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329 "uuid": "e64ed103-3e36-43aa-bf68-a5fff478c23f"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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330 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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331 ]
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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332 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
333 "7": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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334 "annotation": "",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
335 "content_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.4.2",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
336 "id": 7,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
337 "input_connections": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
338 "input_type|bam_input": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
339 "id": 6,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
340 "output_name": "outFile"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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341 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
342 "reference_source|ref_file": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
343 "id": 0,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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344 "output_name": "output"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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345 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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346 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
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diff changeset
347 "inputs": [],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
348 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
349 "name": "Map with BWA",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
350 "outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
351 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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352 "name": "bam_output",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
354 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
355 ],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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356 "position": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
359 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
360 "post_job_actions": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
361 "DeleteIntermediatesActionbam_output": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
362 "action_arguments": {},
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
363 "action_type": "DeleteIntermediatesAction",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
364 "output_name": "bam_output"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
365 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
366 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
367 "tool_errors": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
368 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.4.2",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
370 "tool_version": "0.4.2",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
371 "type": "tool",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
372 "uuid": "247ceef2-d557-458a-a747-8e237df453fa",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
373 "workflow_outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
374 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
376 "output_name": "bam_output",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
378 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
379 ]
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
380 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
381 "8": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
382 "annotation": "",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
383 "content_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SortSam/1.136.1",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
384 "id": 8,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
385 "input_connections": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
386 "inputFile": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
387 "id": 7,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
388 "output_name": "bam_output"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
389 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
390 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
391 "inputs": [],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
392 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
393 "name": "SortSam",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
394 "outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
395 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
396 "name": "outFile",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
397 "type": "bam"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
398 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
399 ],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
400 "position": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
401 "left": 1714.9005279541016,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
402 "top": 199.99998092651367
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
403 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
404 "post_job_actions": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
405 "DeleteIntermediatesActionoutFile": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
406 "action_arguments": {},
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
407 "action_type": "DeleteIntermediatesAction",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
408 "output_name": "outFile"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
409 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
410 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
411 "tool_errors": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
412 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SortSam/1.136.1",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
413 "tool_state": "{\"inputFile\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"sort_order\": \"\\\"queryname\\\"\", \"validation_stringency\": \"\\\"LENIENT\\\"\"}",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
414 "tool_version": "1.136.1",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
415 "type": "tool",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
416 "uuid": "3fe9acee-3144-4aac-9ad8-6d11205b9ea1",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
417 "workflow_outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
418 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
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diff changeset
419 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
420 "output_name": "outFile",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
421 "uuid": "b71efaa4-fca9-4060-82ee-deb88042e2c1"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
422 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
423 ]
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
424 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
425 "9": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
426 "annotation": "",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
427 "content_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
428 "id": 9,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
429 "input_connections": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
430 "input1": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
431 "id": 8,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
432 "output_name": "outFile"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
433 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
434 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
435 "inputs": [],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
436 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
437 "name": "BAM-to-SAM",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
438 "outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
439 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
440 "name": "output1",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
441 "type": "sam"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
442 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
443 ],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
444 "position": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
445 "left": 2043.082290649414,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
446 "top": 199.99998092651367
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
447 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
448 "post_job_actions": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
449 "DeleteIntermediatesActionoutput1": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
450 "action_arguments": {},
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
451 "action_type": "DeleteIntermediatesAction",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
452 "output_name": "output1"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
453 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
454 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
455 "tool_errors": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
456 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
457 "tool_state": "{\"header\": \"\\\"-h\\\"\", \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"__page__\": 0}",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
458 "tool_version": "2.0",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
459 "type": "tool",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
460 "uuid": "64102260-42a8-4c58-aad5-48bab5304c10",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
461 "workflow_outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
462 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
463 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
464 "output_name": "output1",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
465 "uuid": "472d0a97-2929-4eba-bd8f-d3dc15bd75b9"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
466 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
467 ]
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
468 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
469 "10": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
470 "annotation": "",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
471 "content_id": "testtoolshed.g2.bx.psu.edu/repos/chrisd/coverage_sampler/gene_fraction/0.1.0",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
472 "id": 10,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
473 "input_connections": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
474 "input2": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
475 "id": 9,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
476 "output_name": "output1"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
477 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
478 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
479 "inputs": [],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
480 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
481 "name": "Coverage Sampler",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
482 "outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
483 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
484 "name": "output1",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
485 "type": "tabular"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
486 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
487 ],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
488 "position": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
489 "left": 2271.264175415039,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
490 "top": 199.99998092651367
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
491 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
492 "post_job_actions": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
493 "ChangeDatatypeActionoutput1": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
494 "action_arguments": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
495 "newtype": "csv"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
496 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
497 "action_type": "ChangeDatatypeAction",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
498 "output_name": "output1"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
499 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
500 "HideDatasetActionoutput1": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
501 "action_arguments": {},
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
502 "action_type": "HideDatasetAction",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
503 "output_name": "output1"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
504 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
505 "RenameDatasetActionoutput1": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
506 "action_arguments": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
507 "newname": "Gene Fraction Results"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
508 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
509 "action_type": "RenameDatasetAction",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
510 "output_name": "output1"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
511 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
512 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
513 "tool_errors": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
514 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/chrisd/coverage_sampler/gene_fraction/0.1.0",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
515 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"min\": \"\\\"5\\\"\", \"max\": \"\\\"100\\\"\", \"__rerun_remap_job_id__\": null, \"samples\": \"\\\"1\\\"\", \"skip\": \"\\\"5\\\"\", \"threshold\": \"\\\"80\\\"\"}",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
516 "tool_version": "0.1.0",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
517 "type": "tool",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
518 "uuid": "0d245bfb-d95b-4868-ac44-8e4ca0ba8f9b",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
519 "workflow_outputs": []
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
520 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
521 "11": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
522 "annotation": "",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
523 "content_id": "testtoolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snp_caller/0.1.0",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
524 "id": 11,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
525 "input_connections": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
526 "sam_type|sampe_input2": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
527 "id": 9,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
528 "output_name": "output1"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
529 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
530 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
531 "inputs": [],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
532 "label": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
533 "name": "Snip Finder",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
534 "outputs": [
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
535 {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
536 "name": "output1",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
537 "type": "tabular"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
538 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
539 ],
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
540 "position": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
541 "left": 2271.264175415039,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
542 "top": 337.17329025268555
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
543 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
544 "post_job_actions": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
545 "ChangeDatatypeActionoutput1": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
546 "action_arguments": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
547 "newtype": "csv"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
548 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
549 "action_type": "ChangeDatatypeAction",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
550 "output_name": "output1"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
551 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
552 "HideDatasetActionoutput1": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
553 "action_arguments": {},
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
554 "action_type": "HideDatasetAction",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
555 "output_name": "output1"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
556 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
557 "RenameDatasetActionoutput1": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
558 "action_arguments": {
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
559 "newname": "Snip Results"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
560 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
561 "action_type": "RenameDatasetAction",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
562 "output_name": "output1"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
563 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
564 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
565 "tool_errors": null,
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
566 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snp_caller/0.1.0",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
567 "tool_state": "{\"sam_type\": \"{\\\"best\\\": \\\"False\\\", \\\"mode\\\": \\\"paired_end\\\", \\\"__current_case__\\\": 1, \\\"sampe_input2\\\": null}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
568 "tool_version": "0.1.0",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
569 "type": "tool",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
570 "uuid": "a16bf95a-c26a-4aac-8431-844f676c1dd3",
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
571 "workflow_outputs": []
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
572 }
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
573 },
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
574 "uuid": "e7a44935-9e5c-46ae-988e-01f0905d885c"
1f4509af191a planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 6fb8bfb033905a37bb6a02a5bc8029c87fa524b0
chrisd
parents:
diff changeset
575 }