diff snp_caller/src/FastaRecord.h @ 0:0fd352f62446 draft default tip

planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snp_caller/src/FastaRecord.h	Sun Feb 21 06:05:24 2016 -0500
@@ -0,0 +1,27 @@
+#ifndef FASTA_RECORD_H
+#define FASTA_RECORD_H
+
+#include <string>
+#include <vector>
+#include <map>
+
+class FastaRecord {
+public:
+	FastaRecord(std::string gene_id, std::string gene);
+	
+	inline std::string gene_id() const	{ return _gene_id; };
+	inline std::string gene() const		{ return _gene;	};
+
+	static int find_gene(const std::vector<FastaRecord> &records,
+			     const std::string &gene_id,
+			     std::string seq = "");
+	static void sort_by_gene_id(std::vector<FastaRecord> &records);
+
+	std::map<std::string, int> snip_database;
+private:
+	std::string _gene_id;
+	std::string _gene;
+};
+
+
+#endif //FASTA_RECORD_H