Mercurial > repos > chrisd > testshed
comparison snp_caller/src/FastaRecord.h @ 0:0fd352f62446 draft default tip
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
author | chrisd |
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date | Sun, 21 Feb 2016 06:05:24 -0500 |
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-1:000000000000 | 0:0fd352f62446 |
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1 #ifndef FASTA_RECORD_H | |
2 #define FASTA_RECORD_H | |
3 | |
4 #include <string> | |
5 #include <vector> | |
6 #include <map> | |
7 | |
8 class FastaRecord { | |
9 public: | |
10 FastaRecord(std::string gene_id, std::string gene); | |
11 | |
12 inline std::string gene_id() const { return _gene_id; }; | |
13 inline std::string gene() const { return _gene; }; | |
14 | |
15 static int find_gene(const std::vector<FastaRecord> &records, | |
16 const std::string &gene_id, | |
17 std::string seq = ""); | |
18 static void sort_by_gene_id(std::vector<FastaRecord> &records); | |
19 | |
20 std::map<std::string, int> snip_database; | |
21 private: | |
22 std::string _gene_id; | |
23 std::string _gene; | |
24 }; | |
25 | |
26 | |
27 #endif //FASTA_RECORD_H |