comparison snp_caller/src/FastaRecord.h @ 0:0fd352f62446 draft default tip

planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
author chrisd
date Sun, 21 Feb 2016 06:05:24 -0500
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-1:000000000000 0:0fd352f62446
1 #ifndef FASTA_RECORD_H
2 #define FASTA_RECORD_H
3
4 #include <string>
5 #include <vector>
6 #include <map>
7
8 class FastaRecord {
9 public:
10 FastaRecord(std::string gene_id, std::string gene);
11
12 inline std::string gene_id() const { return _gene_id; };
13 inline std::string gene() const { return _gene; };
14
15 static int find_gene(const std::vector<FastaRecord> &records,
16 const std::string &gene_id,
17 std::string seq = "");
18 static void sort_by_gene_id(std::vector<FastaRecord> &records);
19
20 std::map<std::string, int> snip_database;
21 private:
22 std::string _gene_id;
23 std::string _gene;
24 };
25
26
27 #endif //FASTA_RECORD_H