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annotate snp_caller/src/Fasta.h @ 0:0fd352f62446 draft default tip
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
author | chrisd |
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date | Sun, 21 Feb 2016 06:05:24 -0500 |
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0fd352f62446
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
chrisd
parents:
diff
changeset
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1 #include "FastaRecord.h" |
0fd352f62446
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
chrisd
parents:
diff
changeset
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2 #include <vector> |
0fd352f62446
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
chrisd
parents:
diff
changeset
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3 #include <string> |
0fd352f62446
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
chrisd
parents:
diff
changeset
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4 |
0fd352f62446
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
chrisd
parents:
diff
changeset
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5 class Fasta { |
0fd352f62446
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
chrisd
parents:
diff
changeset
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6 public: |
0fd352f62446
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
chrisd
parents:
diff
changeset
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7 Fasta(std::string amr_fp); |
0fd352f62446
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
chrisd
parents:
diff
changeset
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8 void read_fasta(const std::string &amr_fp); |
0fd352f62446
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
chrisd
parents:
diff
changeset
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9 |
0fd352f62446
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
chrisd
parents:
diff
changeset
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10 std::vector<FastaRecord> records; |
0fd352f62446
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
chrisd
parents:
diff
changeset
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11 private: |
0fd352f62446
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
chrisd
parents:
diff
changeset
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12 std::string _amr_fp; |
0fd352f62446
planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty
chrisd
parents:
diff
changeset
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13 }; |