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annotate tool_dependencies.xml @ 0:4b10ed36eb91 draft

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planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
author chrisd
date Mon, 22 Feb 2016 19:43:25 -0500
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children 61b6570a752e
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4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
parents:
diff changeset
1 <?xml version="1.0"?>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
parents:
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2 <tool_dependency>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
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3 <package name="snp" version="0.1">
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
parents:
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4 <install version="1.0">
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
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5 <actions>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
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6 <action type="shell_command">git clone --recursive https://github.com/ChrisD11/snp_caller.git</action>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
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7 <action type="shell_command">make</action>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
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8 <action type="move_file">
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
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9 <source>snp</source>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
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10 <destination>$INSTALL_DIR/bin</destination>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
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11 </action>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
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12 <action type="set_environment">
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
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13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
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14 </action>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
parents:
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15 </actions>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
parents:
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16 </install>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
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17 <readme>Compiling snp finder requires a C++ compiler</readme>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
parents:
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18 </package>
4b10ed36eb91 planemo upload for repository https://github.com/ChrisD11/snp_caller_dep commit 6abdb1a7169f828f14104fece8a69a81e92717f4
chrisd
parents:
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19 </tool_dependency>