Mercurial > repos > chrisd > coverage_sampler

changeset 1:5e006185a2aa draft

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planemo upload for repository https://github.com/ChrisD11/csa_dep commit 925c3fe937b702bb49c2582fd73e232c70901193-dirty
author chrisd
date Mon, 22 Feb 2016 23:46:02 -0500
parents b53a97d0d54c
children a0d746fea00c
files gene_fraction.xml
diffstat 1 files changed, 3 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/gene_fraction.xml	Mon Feb 22 22:31:34 2016 -0500
+++ b/gene_fraction.xml	Mon Feb 22 23:46:02 2016 -0500
@@ -5,6 +5,7 @@
     <stdio>
         <exit_code range="1:" />
     </stdio>
+    <description>Calculates the amount of a gene that is covered from a sample of reads</description>
     <command><![CDATA[
 	csa
 	  -amr_fp $input1
@@ -41,6 +42,8 @@
       </test>
     </tests>
     <help><![CDATA[
+
+This program takes iterative samples from a SAM file with the goal of identifying the amount of a gene that is covered by a sample of reads.
         
 Program: Coverage Sampler 
 Contact: Chris Dean <cdean11@rams.colostate.edu