Mercurial > repos > chrisd > coverage_sampler

comparison coverage_sampler.xml @ 26:89c934705f57 draft

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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/gene_fraction commit 8f733c58a6f788a3bb453090601a2f7e22f1f9ae-dirty
author chrisd
date Wed, 29 Jun 2016 03:43:56 -0400
parents 99d75ed267fd
children 084c1b36be0d
comparison
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25:99d75ed267fd 26:89c934705f57
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70 **Options** 70 **Options**
71 71
72 Options: -q INT mask bases with quality lower than INT [0] 72 -min INT Starting level to sample reads from (level is in percent)
73 -X INT mask bases with quality higher than INT [255]
74
75 Options: -min INT Starting level to sample reads from (level is in percent)
76 -max INT Ending level to sample reads from (level is in percent) 73 -max INT Ending level to sample reads from (level is in percent)
77 -skip INT Number of levels to skip 74 -skip INT Number of levels to skip
78 -t INT Gene fraction threshold (only genes with a gene fraction greater than this threshold are output) 75 -t INT Gene fraction threshold (only genes with a gene fraction greater than this threshold are output)
79 -samples INT Number of iterations per sample level 76 -samples INT Number of iterations per sample level
80 77