annotate tool_dependencies.xml @ 10:825eaacb935f draft

planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/gene_fraction commit b2ce2a815cbaa81eca2308836a2a4d3d9feb42b8-dirty
author chrisd
date Wed, 29 Jun 2016 00:08:22 -0400
parents 1fdee48eab64
children 19d3b80d9dea
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
1 <?xml version="1.0"?>
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
2 <tool_dependency>
8
1fdee48eab64 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/gene_fraction commit 37ce3ef17e70df9f0697adc1c53ce171621e4794-dirty
chrisd
parents: 5
diff changeset
3 <package name="csa" version="0.2">
10
825eaacb935f planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/gene_fraction commit b2ce2a815cbaa81eca2308836a2a4d3d9feb42b8-dirty
chrisd
parents: 8
diff changeset
4 <install version="1.0">
0
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
5 <actions>
5
17bce2f348b6 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/gene_fraction commit cd12289e62a04427f3db8ae40246cf25b8486c74-dirty
chrisd
parents: 0
diff changeset
6 <action type="shell_command">git clone --recursive https://github.com/cdeanj/coverage_sampler.git</action>
0
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
7 <action type="shell_command">make</action>
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
8 <action type="move_file">
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
9 <source>csa</source>
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
10 <destination>$INSTALL_DIR/bin</destination>
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
11 </action>
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
12 <action type="set_environment">
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
14 </action>
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
15 </actions>
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
16 </install>
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
17 <readme>Compiling csa requires a C++ compiler</readme>
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
18 </package>
b53a97d0d54c planemo upload for repository https://github.com/ChrisD11/csa_dep commit e9517a49dbeb556362b2bfafb62ca70af93106dd
chrisd
parents:
diff changeset
19 </tool_dependency>