Mercurial > repos > charles_s_test > seqsero2

changeset 11:b4484db557ab draft

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planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
author charles_s_test
date Wed, 29 Nov 2017 12:46:19 -0500
parents 53efef402c51
children 0fdf26c5e805
files libs/BWA_analysis_H_update_new_family_dependent.py libs/BWA_analysis_O_new_dependent.py libs/H_combination_output_analysis.py libs/Otype_determine_analysis.py test.txt
diffstat 5 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/libs/BWA_analysis_H_update_new_family_dependent.py	Wed Nov 29 08:34:19 2017 -0500
+++ b/libs/BWA_analysis_H_update_new_family_dependent.py	Wed Nov 29 12:46:19 2017 -0500
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python2.7
 
 import os
 from Bio import SeqIO
--- a/libs/BWA_analysis_O_new_dependent.py	Wed Nov 29 08:34:19 2017 -0500
+++ b/libs/BWA_analysis_O_new_dependent.py	Wed Nov 29 12:46:19 2017 -0500
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python2.7
 #tyr_of_O2_O9.fasta should be in the same directory, in it, O9 should be first then O2
 
 import os
@@ -65,7 +65,7 @@
     rev_fq=re_core_id+".fastq"
     dirpath = os.path.abspath(os.path.dirname(os.path.realpath(__file__)))#######03152016
     print "check fastq id and make them in accordance with each other...please wait..."
-    os.system("python "+dirpath+"/compare_and_change_two_fastq_id.py "+for_fq+" "+rev_fq)#######03152016
+    os.system("python2.7 "+dirpath+"/compare_and_change_two_fastq_id.py "+for_fq+" "+rev_fq)#######03152016
     for_sai=for_core_id+".sai"
     rev_sai=re_core_id+".sai"
     sam=for_core_id+".sam"
--- a/libs/H_combination_output_analysis.py	Wed Nov 29 08:34:19 2017 -0500
+++ b/libs/H_combination_output_analysis.py	Wed Nov 29 12:46:19 2017 -0500
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python2.7
 # "H_combination_output_analysis.py target.fasta fliCdatabase.fasta fljBdatabase.fasta"
 # must have ispcr and primers of fliC and fljB at the same directory
 
--- a/libs/Otype_determine_analysis.py	Wed Nov 29 08:34:19 2017 -0500
+++ b/libs/Otype_determine_analysis.py	Wed Nov 29 12:46:19 2017 -0500
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python2.7
 
 '''
 revised at 11/24/2013
--- a/test.txt	Wed Nov 29 08:34:19 2017 -0500
+++ b/test.txt	Wed Nov 29 12:46:19 2017 -0500
@@ -21,4 +21,4 @@
 
 
 None
-Wed Nov 29 07:50:31 2017
\ No newline at end of file
+Wed Nov 29 12:44:37 2017
\ No newline at end of file